Query psy5205
Match_columns 113
No_of_seqs 165 out of 1145
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 20:01:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.9E-32 4.1E-37 200.5 10.5 110 4-113 144-294 (406)
2 KOG0730|consensus 100.0 2.5E-32 5.3E-37 211.0 9.8 110 3-113 426-574 (693)
3 KOG0733|consensus 100.0 5.5E-31 1.2E-35 202.7 10.2 109 4-113 504-651 (802)
4 KOG0736|consensus 100.0 1.8E-30 3.8E-35 203.5 10.4 111 2-113 663-815 (953)
5 KOG0734|consensus 100.0 4.1E-29 8.9E-34 190.4 10.0 111 2-113 294-443 (752)
6 KOG0733|consensus 99.9 1.3E-27 2.9E-32 184.1 9.6 109 4-113 183-333 (802)
7 KOG0727|consensus 99.9 1.8E-27 3.8E-32 169.1 9.2 111 3-113 147-298 (408)
8 KOG0739|consensus 99.9 2.2E-26 4.8E-31 166.2 8.7 110 2-113 124-273 (439)
9 KOG0735|consensus 99.9 4.3E-26 9.3E-31 178.1 10.4 106 7-113 663-807 (952)
10 KOG0726|consensus 99.9 7.3E-26 1.6E-30 163.2 9.4 109 5-113 179-328 (440)
11 KOG0738|consensus 99.9 4E-25 8.7E-30 163.6 8.9 103 3-106 204-345 (491)
12 KOG0731|consensus 99.9 1.2E-24 2.6E-29 171.8 11.3 110 4-113 304-454 (774)
13 KOG0652|consensus 99.9 3.5E-24 7.7E-29 152.9 10.2 111 3-113 163-314 (424)
14 KOG0728|consensus 99.9 3.3E-24 7.1E-29 152.4 9.0 109 5-113 141-290 (404)
15 COG0465 HflB ATP-dependent Zn 99.9 7.5E-24 1.6E-28 164.4 10.1 111 3-113 142-292 (596)
16 COG0464 SpoVK ATPases of the A 99.9 1.8E-23 4E-28 160.7 11.3 110 3-113 234-382 (494)
17 KOG0729|consensus 99.9 2.1E-23 4.5E-28 149.4 10.6 110 4-113 170-320 (435)
18 TIGR01243 CDC48 AAA family ATP 99.9 3.9E-22 8.4E-27 159.5 11.3 110 4-113 446-594 (733)
19 PTZ00454 26S protease regulato 99.9 5.4E-22 1.2E-26 149.3 11.2 111 3-113 137-288 (398)
20 COG1223 Predicted ATPase (AAA+ 99.9 1.8E-22 4E-27 143.7 8.2 106 5-113 115-258 (368)
21 KOG0737|consensus 99.9 4.3E-22 9.4E-27 146.4 8.0 112 1-113 82-235 (386)
22 TIGR03689 pup_AAA proteasome A 99.9 1.2E-21 2.5E-26 150.9 10.2 111 3-113 174-337 (512)
23 TIGR01241 FtsH_fam ATP-depende 99.8 1.2E-20 2.5E-25 145.4 10.3 112 2-113 46-197 (495)
24 PRK03992 proteasome-activating 99.8 6.2E-20 1.4E-24 137.9 10.8 110 4-113 124-274 (389)
25 KOG0732|consensus 99.8 8.3E-20 1.8E-24 148.0 9.1 107 6-113 260-410 (1080)
26 PTZ00361 26 proteosome regulat 99.8 1.3E-19 2.7E-24 137.8 9.2 110 4-113 176-326 (438)
27 KOG0651|consensus 99.8 6.9E-20 1.5E-24 132.8 6.6 108 6-113 127-275 (388)
28 CHL00176 ftsH cell division pr 99.8 1.5E-18 3.3E-23 136.9 10.7 111 3-113 175-325 (638)
29 CHL00195 ycf46 Ycf46; Provisio 99.8 5.4E-18 1.2E-22 130.4 10.7 105 5-113 222-364 (489)
30 KOG0730|consensus 99.8 3.7E-18 8E-23 132.9 9.0 105 6-113 180-324 (693)
31 TIGR01243 CDC48 AAA family ATP 99.8 9.4E-18 2E-22 134.4 11.0 108 5-113 172-318 (733)
32 TIGR01242 26Sp45 26S proteasom 99.7 1E-17 2.3E-22 124.7 10.5 110 4-113 115-265 (364)
33 KOG0741|consensus 99.7 1.2E-17 2.5E-22 128.2 8.6 109 5-113 213-373 (744)
34 KOG0740|consensus 99.7 2.1E-17 4.6E-22 124.5 8.1 107 5-113 147-294 (428)
35 PRK10733 hflB ATP-dependent me 99.7 6.1E-17 1.3E-21 128.2 9.7 111 3-113 144-294 (644)
36 PLN00020 ribulose bisphosphate 99.6 6.8E-16 1.5E-20 114.9 8.6 95 7-104 111-251 (413)
37 CHL00206 ycf2 Ycf2; Provisiona 99.2 6.7E-11 1.5E-15 101.2 7.1 53 54-113 1721-1776(2281)
38 KOG0744|consensus 99.0 5.7E-10 1.2E-14 82.1 5.1 64 50-113 230-301 (423)
39 CHL00181 cbbX CbbX; Provisiona 99.0 3.2E-09 6.9E-14 77.3 8.6 88 11-104 23-158 (287)
40 PF00004 AAA: ATPase family as 98.9 8.8E-09 1.9E-13 65.5 7.5 63 50-113 42-106 (132)
41 TIGR02880 cbbX_cfxQ probable R 98.9 1.7E-08 3.8E-13 73.3 9.2 87 12-104 23-157 (284)
42 TIGR02881 spore_V_K stage V sp 98.7 1.2E-07 2.5E-12 68.0 8.1 88 10-104 5-140 (261)
43 COG0464 SpoVK ATPases of the A 98.5 8.3E-07 1.8E-11 68.7 7.7 55 50-105 61-115 (494)
44 KOG0743|consensus 98.4 2.2E-06 4.8E-11 65.4 8.2 103 8-112 198-342 (457)
45 KOG0742|consensus 98.3 2.6E-06 5.7E-11 65.0 7.6 96 5-100 349-478 (630)
46 TIGR02639 ClpA ATP-dependent C 97.9 5E-05 1.1E-09 61.7 6.8 34 50-83 259-292 (731)
47 CHL00095 clpC Clp protease ATP 97.7 0.00011 2.3E-09 60.5 6.9 35 50-84 256-290 (821)
48 PRK11034 clpA ATP-dependent Cl 97.4 0.00047 1E-08 56.4 6.6 34 50-83 263-296 (758)
49 PRK07940 DNA polymerase III su 97.4 0.0013 2.8E-08 50.1 8.4 44 52-107 100-147 (394)
50 TIGR00763 lon ATP-dependent pr 97.4 0.00074 1.6E-08 55.3 7.1 43 52-103 402-444 (775)
51 PRK05342 clpX ATP-dependent pr 97.3 0.0016 3.5E-08 49.9 8.1 42 63-104 171-214 (412)
52 PRK10865 protein disaggregatio 97.3 0.00073 1.6E-08 56.0 6.5 36 50-85 255-291 (857)
53 KOG0735|consensus 97.2 0.00063 1.4E-08 55.2 5.3 54 50-103 479-533 (952)
54 TIGR03345 VI_ClpV1 type VI sec 97.0 0.002 4.4E-08 53.4 6.1 35 50-84 264-299 (852)
55 TIGR00382 clpX endopeptidase C 97.0 0.0043 9.2E-08 47.6 7.2 42 63-104 179-222 (413)
56 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0029 6.3E-08 52.4 5.1 34 50-83 250-284 (852)
57 PRK04195 replication factor C 96.4 0.028 6E-07 43.8 8.3 79 8-102 11-127 (482)
58 KOG0736|consensus 95.7 0.036 7.7E-07 45.7 6.3 61 50-112 475-536 (953)
59 PRK05201 hslU ATP-dependent pr 95.5 0.0096 2.1E-07 45.9 2.4 40 65-104 249-288 (443)
60 PRK14958 DNA polymerase III su 95.4 0.054 1.2E-06 42.7 6.2 22 8-29 13-34 (509)
61 COG2256 MGS1 ATPase related to 95.3 0.016 3.6E-07 44.3 2.9 68 8-78 21-117 (436)
62 PRK00080 ruvB Holliday junctio 95.2 0.045 9.8E-07 40.4 5.0 22 8-29 22-43 (328)
63 PRK08691 DNA polymerase III su 95.1 0.054 1.2E-06 44.2 5.5 44 52-107 102-149 (709)
64 TIGR02397 dnaX_nterm DNA polym 95.1 0.12 2.5E-06 38.2 6.8 24 6-29 9-32 (355)
65 TIGR00390 hslU ATP-dependent p 95.0 0.013 2.9E-07 45.1 1.7 40 65-104 247-286 (441)
66 PRK14965 DNA polymerase III su 95.0 0.084 1.8E-06 42.2 6.1 22 8-29 13-34 (576)
67 PRK10787 DNA-binding ATP-depen 94.9 0.093 2E-06 43.4 6.4 41 54-103 406-446 (784)
68 PRK14969 DNA polymerase III su 94.8 0.095 2.1E-06 41.5 6.1 22 8-29 13-34 (527)
69 PF07724 AAA_2: AAA domain (Cd 94.7 0.03 6.4E-07 37.9 2.6 36 68-104 71-106 (171)
70 COG1220 HslU ATP-dependent pro 94.7 0.025 5.5E-07 42.7 2.4 87 14-103 191-288 (444)
71 COG0542 clpA ATP-binding subun 94.7 0.15 3.2E-06 42.2 6.8 34 50-83 247-280 (786)
72 PRK14970 DNA polymerase III su 94.6 0.16 3.5E-06 37.9 6.5 85 7-104 13-135 (367)
73 PRK14956 DNA polymerase III su 94.6 0.15 3.2E-06 40.1 6.4 22 8-29 15-36 (484)
74 PRK07003 DNA polymerase III su 94.5 0.11 2.4E-06 43.0 5.8 88 8-107 13-149 (830)
75 PRK12323 DNA polymerase III su 94.5 0.15 3.2E-06 41.6 6.5 44 52-107 107-154 (700)
76 PRK05563 DNA polymerase III su 94.4 0.16 3.5E-06 40.4 6.5 23 7-29 12-34 (559)
77 PF05496 RuvB_N: Holliday junc 94.3 0.13 2.8E-06 36.6 5.3 83 8-104 21-128 (233)
78 PRK14961 DNA polymerase III su 94.3 0.19 4E-06 37.8 6.4 22 8-29 13-34 (363)
79 PRK13342 recombination factor 94.2 0.12 2.7E-06 39.4 5.3 69 8-78 9-105 (413)
80 TIGR00635 ruvB Holliday juncti 93.9 0.056 1.2E-06 39.2 2.9 21 9-29 2-22 (305)
81 smart00382 AAA ATPases associa 93.8 0.086 1.9E-06 32.4 3.3 32 50-81 63-94 (148)
82 PRK14962 DNA polymerase III su 93.8 0.19 4.1E-06 39.3 5.7 23 7-29 10-32 (472)
83 PRK14951 DNA polymerase III su 93.6 0.25 5.5E-06 39.9 6.2 22 8-29 13-34 (618)
84 PRK14964 DNA polymerase III su 93.6 0.27 5.8E-06 38.7 6.2 44 52-107 99-146 (491)
85 PF01637 Arch_ATPase: Archaeal 93.5 0.23 5E-06 33.8 5.3 54 50-110 102-157 (234)
86 PRK14960 DNA polymerase III su 93.4 0.22 4.7E-06 40.7 5.6 22 8-29 12-33 (702)
87 PRK07994 DNA polymerase III su 93.3 0.23 5.1E-06 40.3 5.6 22 8-29 13-34 (647)
88 PRK14963 DNA polymerase III su 93.3 0.3 6.5E-06 38.5 6.1 23 7-29 10-32 (504)
89 KOG0989|consensus 93.3 0.27 5.8E-06 36.7 5.4 23 7-29 32-54 (346)
90 KOG2004|consensus 93.3 0.2 4.3E-06 41.3 5.1 23 11-33 411-435 (906)
91 PRK14949 DNA polymerase III su 93.2 0.26 5.7E-06 41.5 5.8 22 8-29 13-34 (944)
92 PLN03025 replication factor C 93.2 0.41 8.9E-06 35.2 6.4 23 7-29 9-31 (319)
93 PRK07764 DNA polymerase III su 93.1 0.26 5.7E-06 41.1 5.8 22 8-29 12-33 (824)
94 TIGR00390 hslU ATP-dependent p 92.8 0.1 2.2E-06 40.4 2.8 81 12-100 13-135 (441)
95 PRK00411 cdc6 cell division co 92.6 0.36 7.9E-06 36.2 5.6 35 64-106 137-171 (394)
96 PRK14957 DNA polymerase III su 91.9 0.53 1.2E-05 37.6 5.9 22 8-29 13-34 (546)
97 PRK08451 DNA polymerase III su 91.9 0.6 1.3E-05 37.2 6.1 22 8-29 11-32 (535)
98 PRK14959 DNA polymerase III su 91.9 0.55 1.2E-05 38.1 6.0 23 7-29 12-34 (624)
99 COG2812 DnaX DNA polymerase II 91.7 0.98 2.1E-05 35.8 7.0 40 7-49 12-51 (515)
100 PRK06645 DNA polymerase III su 91.6 0.64 1.4E-05 36.8 6.0 43 50-104 109-155 (507)
101 PRK07133 DNA polymerase III su 91.6 0.6 1.3E-05 38.5 6.0 85 7-106 14-147 (725)
102 PRK14948 DNA polymerase III su 91.5 0.81 1.8E-05 37.1 6.6 44 50-105 102-149 (620)
103 PRK11034 clpA ATP-dependent Cl 91.5 0.66 1.4E-05 38.4 6.1 31 61-103 553-583 (758)
104 TIGR02639 ClpA ATP-dependent C 91.1 1 2.2E-05 37.1 6.9 35 57-103 545-579 (731)
105 PRK06305 DNA polymerase III su 90.6 1.2 2.6E-05 34.6 6.6 22 8-29 14-35 (451)
106 PRK14950 DNA polymerase III su 90.3 1.1 2.3E-05 36.0 6.2 23 7-29 12-34 (585)
107 KOG0745|consensus 90.1 0.54 1.2E-05 36.9 4.2 55 50-104 272-332 (564)
108 PRK05564 DNA polymerase III su 90.1 1.8 3.8E-05 31.8 6.8 22 8-29 1-22 (313)
109 TIGR02928 orc1/cdc6 family rep 90.0 1.1 2.3E-05 33.2 5.8 28 51-78 114-142 (365)
110 PRK05896 DNA polymerase III su 90.0 1 2.3E-05 36.4 5.9 23 7-29 12-34 (605)
111 PRK06647 DNA polymerase III su 89.9 1 2.2E-05 36.1 5.8 23 7-29 12-34 (563)
112 PHA02544 44 clamp loader, smal 89.9 1.5 3.3E-05 31.8 6.4 22 8-29 18-39 (316)
113 TIGR03345 VI_ClpV1 type VI sec 89.6 1.1 2.5E-05 37.5 6.0 33 59-103 662-694 (852)
114 PRK14952 DNA polymerase III su 89.6 1.1 2.4E-05 36.0 5.8 22 8-29 10-31 (584)
115 PF13401 AAA_22: AAA domain; P 89.0 1.9 4E-05 26.8 5.6 41 51-102 73-113 (131)
116 PRK14955 DNA polymerase III su 88.6 2.6 5.6E-05 32.1 7.0 23 7-29 12-34 (397)
117 PF05673 DUF815: Protein of un 88.4 1.6 3.4E-05 31.5 5.3 80 6-104 22-134 (249)
118 COG1219 ClpX ATP-dependent pro 88.1 1 2.2E-05 34.1 4.3 54 51-104 144-203 (408)
119 KOG0741|consensus 88.0 2.2 4.8E-05 34.5 6.2 54 52-107 585-638 (744)
120 cd01121 Sms Sms (bacterial rad 88.0 0.82 1.8E-05 34.7 3.9 43 39-81 132-174 (372)
121 PRK14971 DNA polymerase III su 87.1 2.7 5.8E-05 34.1 6.5 22 8-29 14-35 (614)
122 PRK09111 DNA polymerase III su 87.1 2.5 5.5E-05 34.1 6.3 45 52-108 115-163 (598)
123 PRK00440 rfc replication facto 86.8 3.7 8E-05 29.6 6.7 22 8-29 14-35 (319)
124 COG0466 Lon ATP-dependent Lon 86.6 2.1 4.6E-05 35.4 5.6 44 51-103 404-447 (782)
125 PRK14953 DNA polymerase III su 86.3 3.5 7.6E-05 32.5 6.6 23 7-29 12-34 (486)
126 PTZ00112 origin recognition co 85.8 2.9 6.2E-05 35.9 6.1 39 41-80 844-884 (1164)
127 TIGR02237 recomb_radB DNA repa 85.3 1.2 2.7E-05 30.3 3.4 27 53-79 85-111 (209)
128 PRK14088 dnaA chromosomal repl 84.5 3.5 7.5E-05 32.0 5.8 17 64-80 193-209 (440)
129 cd00009 AAA The AAA+ (ATPases 84.4 3.9 8.4E-05 25.1 5.2 19 59-77 78-96 (151)
130 PRK05201 hslU ATP-dependent pr 84.2 0.67 1.4E-05 36.0 1.8 81 11-99 15-137 (443)
131 TIGR00678 holB DNA polymerase 83.6 4.3 9.3E-05 27.2 5.4 45 50-106 77-125 (188)
132 KOG0732|consensus 83.2 0.96 2.1E-05 38.8 2.4 33 50-82 638-670 (1080)
133 PRK14954 DNA polymerase III su 83.0 5.6 0.00012 32.4 6.6 23 7-29 12-34 (620)
134 KOG2170|consensus 82.7 14 0.00031 27.8 8.0 26 52-77 165-190 (344)
135 COG2255 RuvB Holliday junction 82.6 0.82 1.8E-05 33.9 1.6 23 7-29 22-44 (332)
136 PF04465 DUF499: Protein of un 82.5 3 6.4E-05 35.9 5.0 26 50-79 88-113 (1035)
137 cd01120 RecA-like_NTPases RecA 81.9 3.3 7.1E-05 26.3 4.2 48 55-102 75-124 (165)
138 PF05621 TniB: Bacterial TniB 80.7 8.2 0.00018 28.7 6.2 28 52-79 132-159 (302)
139 PF10923 DUF2791: P-loop Domai 80.7 2.2 4.8E-05 33.0 3.4 51 51-106 226-276 (416)
140 KOG0990|consensus 80.4 5.8 0.00013 30.0 5.4 73 6-78 36-144 (360)
141 PRK11331 5-methylcytosine-spec 79.6 2.9 6.4E-05 32.8 3.8 40 53-103 258-299 (459)
142 TIGR02012 tigrfam_recA protein 79.2 3.8 8.3E-05 30.6 4.2 62 50-111 118-184 (321)
143 PRK13341 recombination factor 79.1 2 4.4E-05 35.5 2.9 70 7-78 24-122 (725)
144 PRK08058 DNA polymerase III su 78.6 9.5 0.00021 28.3 6.2 21 9-29 3-24 (329)
145 KOG2028|consensus 77.8 2.3 4.9E-05 33.0 2.6 30 50-79 202-236 (554)
146 COG1117 PstB ABC-type phosphat 77.5 19 0.00041 25.9 7.0 79 13-102 114-196 (253)
147 PF14516 AAA_35: AAA-like doma 77.5 2.6 5.6E-05 31.3 2.9 28 52-79 111-141 (331)
148 PRK08903 DnaA regulatory inact 76.7 14 0.00031 25.4 6.3 13 65-77 90-102 (227)
149 PRK09519 recA DNA recombinatio 76.7 7 0.00015 32.8 5.3 78 34-112 103-190 (790)
150 COG1066 Sms Predicted ATP-depe 76.4 14 0.00029 29.0 6.5 46 37-82 140-185 (456)
151 COG1127 Ttg2A ABC-type transpo 75.5 8.7 0.00019 27.9 5.0 20 55-74 153-172 (263)
152 PF13872 AAA_34: P-loop contai 75.1 12 0.00025 27.9 5.7 61 42-102 134-209 (303)
153 PF00154 RecA: recA bacterial 75.1 5.1 0.00011 30.0 3.8 76 33-109 95-180 (322)
154 PF13481 AAA_25: AAA domain; P 75.0 2.3 5.1E-05 28.4 2.0 31 50-80 125-156 (193)
155 KOG1051|consensus 75.0 13 0.00029 31.7 6.5 40 53-104 648-687 (898)
156 PF02463 SMC_N: RecF/RecN/SMC 74.8 9.8 0.00021 26.0 5.1 47 55-112 148-194 (220)
157 KOG0058|consensus 74.1 11 0.00024 31.2 5.8 35 44-78 600-635 (716)
158 COG0542 clpA ATP-binding subun 73.7 3.9 8.4E-05 34.2 3.2 33 59-103 587-619 (786)
159 COG4598 HisP ABC-type histidin 73.2 13 0.00029 26.1 5.3 45 50-105 155-199 (256)
160 COG4555 NatA ABC-type Na+ tran 73.1 18 0.00039 25.8 5.9 72 18-102 109-180 (245)
161 PRK04132 replication factor C 72.7 12 0.00025 31.8 5.7 45 52-108 611-661 (846)
162 cd03283 ABC_MutS-like MutS-lik 72.7 14 0.00031 25.3 5.5 23 52-74 92-114 (199)
163 PRK09112 DNA polymerase III su 72.6 10 0.00023 28.5 5.1 33 64-108 140-172 (351)
164 CHL00095 clpC Clp protease ATP 72.6 6 0.00013 33.1 4.1 35 57-103 603-637 (821)
165 PF13304 AAA_21: AAA domain; P 71.6 18 0.00039 24.1 5.8 29 50-78 240-270 (303)
166 cd01122 GP4d_helicase GP4d_hel 71.1 6.9 0.00015 27.7 3.7 28 54-81 129-156 (271)
167 PF13177 DNA_pol3_delta2: DNA 70.7 13 0.00028 24.6 4.8 47 50-108 83-133 (162)
168 KOG0991|consensus 70.1 9.3 0.0002 28.0 4.1 26 9-34 25-50 (333)
169 KOG1514|consensus 69.6 7.6 0.00016 32.2 3.9 31 50-80 492-523 (767)
170 cd01124 KaiC KaiC is a circadi 69.1 18 0.00039 23.8 5.2 26 54-79 84-109 (187)
171 PF05707 Zot: Zonular occluden 68.4 11 0.00024 25.6 4.1 19 65-83 79-97 (193)
172 PRK11823 DNA repair protein Ra 68.4 4.5 9.8E-05 31.4 2.4 31 50-80 141-171 (446)
173 PRK07471 DNA polymerase III su 68.3 9.1 0.0002 29.0 4.0 23 7-29 15-37 (365)
174 KOG0056|consensus 67.9 44 0.00096 27.3 7.6 47 30-78 658-705 (790)
175 PRK09361 radB DNA repair and r 67.7 6.2 0.00013 27.2 2.8 17 64-80 106-122 (225)
176 cd00983 recA RecA is a bacter 66.6 11 0.00025 28.2 4.1 59 50-108 118-181 (325)
177 TIGR00362 DnaA chromosomal rep 66.1 7.7 0.00017 29.5 3.2 16 65-80 199-214 (405)
178 PF13191 AAA_16: AAA ATPase do 66.1 4.3 9.3E-05 26.6 1.7 14 65-78 150-163 (185)
179 PF07693 KAP_NTPase: KAP famil 66.0 12 0.00025 27.2 4.1 14 64-77 171-184 (325)
180 COG0497 RecN ATPase involved i 65.9 14 0.0003 29.9 4.6 38 64-113 453-490 (557)
181 COG1474 CDC6 Cdc6-related prot 65.9 21 0.00044 27.2 5.4 29 53-81 110-139 (366)
182 PRK07366 succinyldiaminopimela 65.7 9.1 0.0002 28.6 3.5 36 42-78 175-210 (388)
183 TIGR00602 rad24 checkpoint pro 65.7 22 0.00048 29.2 5.8 22 8-29 81-102 (637)
184 COG2874 FlaH Predicted ATPases 64.4 31 0.00066 24.7 5.7 56 50-113 108-163 (235)
185 PF05729 NACHT: NACHT domain 63.8 22 0.00049 22.5 4.8 22 60-81 76-97 (166)
186 PRK12402 replication factor C 63.0 27 0.00058 25.4 5.5 22 8-29 12-33 (337)
187 PF07728 AAA_5: AAA domain (dy 62.8 6.1 0.00013 24.9 1.9 27 65-103 65-91 (139)
188 cd03227 ABC_Class2 ABC-type Cl 62.5 23 0.0005 23.2 4.7 13 65-77 99-111 (162)
189 PRK10865 protein disaggregatio 62.4 43 0.00093 28.4 7.1 27 65-103 670-696 (857)
190 COG1135 AbcC ABC-type metal io 61.8 65 0.0014 24.4 7.2 57 17-78 116-172 (339)
191 KOG0055|consensus 61.7 68 0.0015 28.6 8.2 61 30-100 473-534 (1228)
192 PRK00149 dnaA chromosomal repl 61.5 10 0.00022 29.3 3.2 17 65-81 211-227 (450)
193 COG1196 Smc Chromosome segrega 60.8 26 0.00056 30.7 5.7 50 53-113 1076-1125(1163)
194 cd00006 PTS_IIA_man PTS_IIA, P 60.7 21 0.00045 22.4 4.1 59 14-72 6-65 (122)
195 cd01393 recA_like RecA is a b 60.3 11 0.00023 25.9 2.9 48 63-110 112-160 (226)
196 PRK08068 transaminase; Reviewe 60.1 13 0.00028 27.8 3.5 35 43-78 178-212 (389)
197 PF01078 Mg_chelatase: Magnesi 60.1 10 0.00022 26.6 2.7 26 66-103 107-132 (206)
198 PF09820 AAA-ATPase_like: Pred 59.8 13 0.00029 27.0 3.4 30 52-81 128-159 (284)
199 PRK06067 flagellar accessory p 59.7 20 0.00044 24.8 4.2 28 51-78 106-133 (234)
200 PRK15481 transcriptional regul 58.3 14 0.00031 28.1 3.5 38 41-78 221-258 (431)
201 COG1134 TagH ABC-type polysacc 58.1 12 0.00026 27.1 2.8 29 50-78 150-178 (249)
202 PRK06425 histidinol-phosphate 57.9 14 0.00031 27.0 3.3 36 42-78 132-167 (332)
203 COG5265 ATM1 ABC-type transpor 57.8 18 0.0004 28.5 3.9 21 59-79 411-431 (497)
204 COG4619 ABC-type uncharacteriz 57.5 64 0.0014 22.6 6.2 28 50-78 137-164 (223)
205 PRK07590 L,L-diaminopimelate a 56.7 16 0.00035 27.6 3.5 35 43-78 187-221 (409)
206 COG0436 Aspartate/tyrosine/aro 56.6 16 0.00034 27.9 3.4 32 44-76 175-206 (393)
207 COG4161 ArtP ABC-type arginine 56.6 39 0.00084 23.5 4.9 51 20-75 119-169 (242)
208 PRK10869 recombination and rep 56.5 30 0.00065 27.8 5.1 38 65-113 452-489 (553)
209 PRK09694 helicase Cas3; Provis 56.4 21 0.00046 30.4 4.4 32 63-103 437-468 (878)
210 PF13173 AAA_14: AAA domain 55.9 11 0.00024 23.6 2.2 14 64-77 60-73 (128)
211 TIGR03346 chaperone_ClpB ATP-d 55.6 18 0.0004 30.5 3.9 33 59-103 661-693 (852)
212 TIGR01650 PD_CobS cobaltochela 55.3 14 0.00029 27.8 2.8 19 58-77 128-146 (327)
213 KOG0257|consensus 55.0 18 0.00038 28.1 3.4 34 44-78 184-217 (420)
214 cd01125 repA Hexameric Replica 54.9 51 0.0011 23.0 5.6 28 50-77 96-123 (239)
215 PF13167 GTP-bdg_N: GTP-bindin 54.7 45 0.00098 20.4 4.6 32 42-73 34-65 (95)
216 PRK08636 aspartate aminotransf 53.7 18 0.0004 27.2 3.4 36 42-78 185-220 (403)
217 TIGR02169 SMC_prok_A chromosom 53.5 37 0.0008 29.0 5.4 38 56-101 1087-1124(1164)
218 KOG0345|consensus 53.5 17 0.00036 29.0 3.1 46 50-103 138-187 (567)
219 cd03216 ABC_Carb_Monos_I This 53.5 61 0.0013 21.2 5.9 44 50-101 85-128 (163)
220 PRK08533 flagellar accessory p 53.3 34 0.00073 24.0 4.5 28 51-78 103-130 (230)
221 PLN00143 tyrosine/nicotianamin 52.5 19 0.00041 27.3 3.3 35 43-78 181-215 (409)
222 COG1121 ZnuC ABC-type Mn/Zn tr 52.2 89 0.0019 22.7 7.1 28 46-73 138-165 (254)
223 PRK05664 threonine-phosphate d 52.1 20 0.00044 26.2 3.3 33 43-76 135-167 (330)
224 TIGR03542 DAPAT_plant LL-diami 52.0 21 0.00046 26.9 3.5 35 43-78 184-218 (402)
225 PRK06893 DNA replication initi 51.7 11 0.00024 26.3 1.9 16 65-80 91-106 (229)
226 PRK06290 aspartate aminotransf 51.6 22 0.00048 27.1 3.5 36 42-78 189-224 (410)
227 PLN02231 alanine transaminase 51.6 20 0.00043 28.6 3.4 35 43-78 282-316 (534)
228 PRK13543 cytochrome c biogenes 51.5 65 0.0014 22.0 5.6 44 50-101 140-183 (214)
229 PRK08056 threonine-phosphate d 51.5 22 0.00048 26.2 3.5 33 42-75 152-184 (356)
230 TIGR00416 sms DNA repair prote 51.2 20 0.00044 28.0 3.3 41 39-79 144-184 (454)
231 PRK09354 recA recombinase A; P 51.1 31 0.00068 26.1 4.2 55 50-104 123-182 (349)
232 PRK08769 DNA polymerase III su 50.9 56 0.0012 24.4 5.5 47 50-108 94-144 (319)
233 cd01394 radB RadB. The archaea 50.5 22 0.00048 24.3 3.2 24 54-78 93-116 (218)
234 COG4517 Uncharacterized protei 50.5 31 0.00067 21.3 3.3 40 43-82 44-88 (109)
235 PRK08637 hypothetical protein; 50.2 25 0.00055 26.3 3.7 37 42-78 156-196 (388)
236 PRK09440 avtA valine--pyruvate 50.2 21 0.00045 27.0 3.2 33 43-76 190-222 (416)
237 PF07517 SecA_DEAD: SecA DEAD- 49.5 8.7 0.00019 27.9 1.0 18 64-81 196-213 (266)
238 KOG0479|consensus 49.3 38 0.00083 28.0 4.6 13 66-78 399-411 (818)
239 PF06068 TIP49: TIP49 C-termin 48.6 23 0.0005 27.3 3.2 24 54-77 262-290 (398)
240 TIGR02858 spore_III_AA stage I 48.5 21 0.00046 25.9 2.9 24 51-74 180-203 (270)
241 cd03264 ABC_drug_resistance_li 48.4 61 0.0013 21.9 5.1 25 50-74 133-157 (211)
242 PF00155 Aminotran_1_2: Aminot 48.2 28 0.0006 25.5 3.5 39 40-79 156-194 (363)
243 PLN02397 aspartate transaminas 48.0 25 0.00054 26.9 3.4 36 42-78 204-239 (423)
244 PF00005 ABC_tran: ABC transpo 48.0 31 0.00067 21.4 3.4 25 50-74 111-135 (137)
245 PRK09148 aminotransferase; Val 47.7 27 0.00059 26.3 3.5 35 43-78 176-210 (405)
246 PRK10534 L-threonine aldolase; 47.3 28 0.00061 25.2 3.5 33 42-75 137-169 (333)
247 COG0470 HolB ATPase involved i 47.3 25 0.00053 25.3 3.1 35 65-111 109-143 (325)
248 COG2607 Predicted ATPase (AAA+ 47.1 93 0.002 22.9 5.9 23 4-26 53-75 (287)
249 TIGR00634 recN DNA repair prot 47.1 81 0.0018 25.3 6.2 29 66-102 463-491 (563)
250 PRK09147 succinyldiaminopimela 47.1 28 0.00062 26.0 3.5 36 42-78 176-211 (396)
251 COG1122 CbiO ABC-type cobalt t 47.0 1E+02 0.0022 21.9 6.2 40 55-102 146-185 (235)
252 PRK07337 aminotransferase; Val 46.8 30 0.00066 25.8 3.6 34 42-76 173-206 (388)
253 PLN02368 alanine transaminase 46.7 27 0.00058 26.7 3.4 35 43-78 221-255 (407)
254 KOG0055|consensus 46.6 64 0.0014 28.7 5.7 46 45-98 1123-1169(1228)
255 COG0714 MoxR-like ATPases [Gen 46.4 22 0.00047 26.3 2.7 25 67-103 114-138 (329)
256 PRK08960 hypothetical protein; 46.4 28 0.00061 26.0 3.4 33 43-76 176-208 (387)
257 PRK05707 DNA polymerase III su 46.0 55 0.0012 24.4 4.8 45 50-106 87-135 (328)
258 TIGR03015 pepcterm_ATPase puta 45.8 31 0.00066 24.2 3.4 18 61-78 119-136 (269)
259 PLN02187 rooty/superroot1 45.8 28 0.0006 27.1 3.3 34 43-77 215-248 (462)
260 COG4080 SpoU rRNA Methylase fa 45.5 19 0.00042 23.8 2.1 23 54-76 45-67 (147)
261 PTZ00376 aspartate aminotransf 45.5 29 0.00062 26.2 3.3 35 41-76 185-219 (404)
262 COG0825 AccA Acetyl-CoA carbox 45.3 35 0.00077 25.4 3.6 39 37-79 126-165 (317)
263 TIGR03540 DapC_direct LL-diami 45.3 32 0.0007 25.5 3.5 35 42-77 174-208 (383)
264 PRK14261 phosphate ABC transpo 45.3 67 0.0015 22.5 5.0 25 50-74 152-176 (253)
265 PRK06207 aspartate aminotransf 45.2 30 0.00064 26.2 3.4 35 43-78 189-223 (405)
266 cd03239 ABC_SMC_head The struc 45.2 67 0.0014 21.5 4.8 15 64-78 115-129 (178)
267 cd03286 ABC_MSH6_euk MutS6 hom 45.0 25 0.00054 24.7 2.7 21 52-74 98-118 (218)
268 PRK14269 phosphate ABC transpo 45.0 1E+02 0.0023 21.4 6.2 44 50-101 145-188 (246)
269 PRK08354 putative aminotransfe 45.0 28 0.00061 25.2 3.1 35 43-78 128-162 (311)
270 PRK07681 aspartate aminotransf 44.8 32 0.00069 25.8 3.5 36 42-78 176-211 (399)
271 PRK07324 transaminase; Validat 44.7 34 0.00074 25.5 3.6 33 43-76 164-196 (373)
272 PRK01688 histidinol-phosphate 44.7 21 0.00045 26.4 2.4 33 42-76 155-187 (351)
273 PF12846 AAA_10: AAA-like doma 44.4 22 0.00048 25.0 2.5 17 64-80 219-235 (304)
274 PRK05839 hypothetical protein; 44.4 31 0.00067 25.7 3.3 35 43-78 166-200 (374)
275 PRK06348 aspartate aminotransf 44.2 30 0.00065 25.8 3.2 36 42-78 172-207 (384)
276 PRK14240 phosphate transporter 44.1 1.1E+02 0.0023 21.3 6.1 44 50-101 149-192 (250)
277 TIGR03539 DapC_actino succinyl 44.0 34 0.00074 25.2 3.5 35 42-77 152-186 (357)
278 PRK14253 phosphate ABC transpo 43.9 1.1E+02 0.0024 21.3 6.1 45 50-102 148-192 (249)
279 COG1124 DppF ABC-type dipeptid 43.8 1.1E+02 0.0023 22.3 5.7 59 14-77 112-171 (252)
280 cd03238 ABC_UvrA The excision 43.7 99 0.0021 20.8 5.5 25 50-74 90-116 (176)
281 PF02456 Adeno_IVa2: Adenoviru 43.7 17 0.00037 27.5 1.8 28 55-82 186-214 (369)
282 PRK13355 bifunctional HTH-doma 43.6 30 0.00065 27.2 3.3 34 43-77 292-325 (517)
283 cd03213 ABCG_EPDR ABCG transpo 43.6 99 0.0022 20.8 5.9 42 52-101 116-157 (194)
284 PRK06959 putative threonine-ph 43.5 29 0.00064 25.6 3.0 35 43-78 141-175 (339)
285 PRK09265 aminotransferase AlaT 43.4 31 0.00068 25.9 3.3 35 43-78 179-213 (404)
286 TIGR01264 tyr_amTase_E tyrosin 43.1 32 0.0007 25.8 3.3 35 43-78 179-213 (401)
287 PF13558 SbcCD_C: Putative exo 43.0 20 0.00044 21.3 1.8 12 63-74 61-72 (90)
288 PRK13546 teichoic acids export 42.9 93 0.002 22.2 5.5 27 50-76 146-172 (264)
289 TIGR02329 propionate_PrpR prop 42.8 25 0.00054 28.1 2.7 22 8-29 209-230 (526)
290 cd03275 ABC_SMC1_euk Eukaryoti 42.8 68 0.0015 22.5 4.7 14 65-78 177-190 (247)
291 PF14624 Vwaint: VWA / Hh pro 42.7 32 0.0007 20.3 2.6 24 17-40 5-29 (80)
292 PRK06964 DNA polymerase III su 42.4 89 0.0019 23.6 5.5 47 50-108 113-163 (342)
293 TIGR03411 urea_trans_UrtD urea 42.3 1.1E+02 0.0025 21.1 6.0 45 50-102 146-190 (242)
294 TIGR00223 panD L-aspartate-alp 42.0 23 0.00049 23.0 2.0 21 59-79 96-116 (126)
295 COG0853 PanD Aspartate 1-decar 42.0 22 0.00048 22.9 1.9 19 59-77 95-113 (126)
296 KOG1051|consensus 42.0 36 0.00078 29.2 3.6 34 50-83 264-298 (898)
297 PRK07309 aromatic amino acid a 41.9 36 0.00079 25.5 3.4 36 42-78 176-211 (391)
298 PRK05942 aspartate aminotransf 41.9 38 0.00082 25.4 3.5 36 42-78 180-215 (394)
299 PRK14086 dnaA chromosomal repl 41.7 49 0.0011 27.1 4.2 17 65-81 377-393 (617)
300 KOG1360|consensus 41.6 39 0.00085 26.6 3.5 48 37-85 297-354 (570)
301 cd03232 ABC_PDR_domain2 The pl 41.2 1.1E+02 0.0023 20.5 5.7 41 53-101 114-154 (192)
302 PLN00175 aminotransferase fami 41.1 37 0.0008 25.8 3.3 35 43-78 198-232 (413)
303 PRK13643 cbiO cobalt transport 41.1 1.2E+02 0.0025 22.0 5.8 45 50-102 147-191 (288)
304 PLN02450 1-aminocyclopropane-1 41.1 34 0.00075 26.6 3.2 35 43-78 202-236 (468)
305 PRK13651 cobalt transporter AT 41.1 1.1E+02 0.0023 22.4 5.7 27 50-76 168-194 (305)
306 COG1126 GlnQ ABC-type polar am 40.9 1.4E+02 0.003 21.6 6.1 45 50-105 139-183 (240)
307 PRK13537 nodulation ABC transp 40.9 1.4E+02 0.0031 21.8 7.7 43 51-101 142-184 (306)
308 TIGR00764 lon_rel lon-related 40.8 24 0.00052 28.7 2.3 26 4-29 11-36 (608)
309 TIGR02673 FtsE cell division A 40.8 1.1E+02 0.0024 20.6 5.6 44 50-101 140-183 (214)
310 cd06919 Asp_decarbox Aspartate 40.8 24 0.00052 22.3 1.9 14 60-73 96-109 (111)
311 TIGR00960 3a0501s02 Type II (G 40.8 1.1E+02 0.0025 20.6 5.7 44 50-101 141-184 (216)
312 cd01123 Rad51_DMC1_radA Rad51_ 40.8 33 0.00072 23.6 2.9 43 62-104 111-155 (235)
313 PF12532 DUF3732: Protein of u 40.7 60 0.0013 22.4 4.1 28 53-80 87-116 (193)
314 PRK07682 hypothetical protein; 40.7 38 0.00083 25.1 3.3 36 43-79 165-200 (378)
315 TIGR01618 phage_P_loop phage n 40.5 59 0.0013 22.9 4.0 49 64-112 80-138 (220)
316 PRK05957 aspartate aminotransf 40.4 44 0.00096 25.0 3.7 36 42-78 170-205 (389)
317 PRK07865 N-succinyldiaminopime 40.4 39 0.00085 24.9 3.3 35 43-78 159-193 (364)
318 COG1118 CysA ABC-type sulfate/ 40.4 1.1E+02 0.0024 23.2 5.5 52 17-73 112-163 (345)
319 cd03247 ABCC_cytochrome_bd The 40.4 1.1E+02 0.0023 20.2 6.2 43 51-101 102-144 (178)
320 cd03266 ABC_NatA_sodium_export 40.3 1.2E+02 0.0025 20.6 8.1 44 50-101 139-182 (218)
321 PRK11124 artP arginine transpo 40.2 1.2E+02 0.0027 20.9 5.7 44 50-101 144-187 (242)
322 COG0079 HisC Histidinol-phosph 39.8 27 0.00059 26.3 2.4 30 43-74 156-185 (356)
323 TIGR03608 L_ocin_972_ABC putat 39.8 1.1E+02 0.0025 20.4 5.9 44 50-101 137-180 (206)
324 cd01128 rho_factor Transcripti 39.8 25 0.00053 25.2 2.1 17 63-79 101-117 (249)
325 PTZ00377 alanine aminotransfer 39.7 38 0.00083 26.3 3.3 36 42-78 228-263 (481)
326 cd03300 ABC_PotA_N PotA is an 39.6 1.1E+02 0.0025 21.0 5.4 27 50-76 133-159 (232)
327 COG4098 comFA Superfamily II D 39.4 15 0.00033 28.2 1.0 12 66-77 203-214 (441)
328 PRK10436 hypothetical protein; 39.4 53 0.0011 25.9 4.0 23 6-28 193-215 (462)
329 PRK09257 aromatic amino acid a 39.0 42 0.0009 25.2 3.3 37 41-78 181-217 (396)
330 PF07726 AAA_3: ATPase family 39.0 41 0.00088 22.0 2.8 24 67-102 64-87 (131)
331 COG2804 PulE Type II secretory 38.9 87 0.0019 25.1 5.1 21 7-27 234-254 (500)
332 TIGR00824 EIIA-man PTS system, 38.8 73 0.0016 19.9 3.9 59 14-72 7-66 (116)
333 PRK06107 aspartate aminotransf 38.8 48 0.001 25.0 3.6 36 42-77 176-211 (402)
334 PRK11264 putative amino-acid A 38.5 1.3E+02 0.0029 20.8 6.0 44 50-101 147-190 (250)
335 cd03219 ABC_Mj1267_LivG_branch 38.2 1.3E+02 0.0029 20.6 5.9 45 50-102 146-190 (236)
336 COG1224 TIP49 DNA helicase TIP 38.0 39 0.00084 26.3 2.9 13 65-77 291-303 (450)
337 TIGR02168 SMC_prok_B chromosom 38.0 89 0.0019 26.7 5.4 16 63-78 1109-1124(1179)
338 PHA02436 hypothetical protein 38.0 29 0.00062 18.4 1.6 16 50-65 16-31 (52)
339 PLN00145 tyrosine/nicotianamin 38.0 44 0.00095 25.6 3.3 35 43-78 201-235 (430)
340 PRK13638 cbiO cobalt transport 37.9 1.4E+02 0.0031 21.1 5.8 44 50-101 139-182 (271)
341 PF14097 SpoVAE: Stage V sporu 37.7 1.3E+02 0.0028 20.7 5.1 55 15-74 8-62 (180)
342 PF11019 DUF2608: Protein of u 37.7 42 0.0009 24.1 3.0 31 44-74 152-187 (252)
343 cd03244 ABCC_MRP_domain2 Domai 37.5 1.3E+02 0.0028 20.4 6.2 43 51-101 143-185 (221)
344 PRK07568 aspartate aminotransf 37.5 47 0.001 24.7 3.4 35 43-78 173-207 (397)
345 PRK07683 aminotransferase A; V 37.5 55 0.0012 24.5 3.8 35 43-78 172-206 (387)
346 PRK13649 cbiO cobalt transport 37.5 1.5E+02 0.0032 21.1 5.9 44 50-101 148-191 (280)
347 COG1131 CcmA ABC-type multidru 37.4 61 0.0013 23.7 3.9 22 52-73 141-162 (293)
348 KOG2680|consensus 37.2 23 0.00049 27.0 1.6 13 65-77 288-300 (454)
349 TIGR01817 nifA Nif-specific re 37.1 40 0.00086 26.7 3.0 23 7-29 192-214 (534)
350 TIGR03537 DapC succinyldiamino 37.1 49 0.0011 24.3 3.4 34 42-76 146-179 (350)
351 KOG3062|consensus 37.1 1.6E+02 0.0035 21.5 5.7 61 50-112 17-78 (281)
352 TIGR03420 DnaA_homol_Hda DnaA 37.0 24 0.00051 24.1 1.6 15 65-79 90-104 (226)
353 PRK14251 phosphate ABC transpo 36.7 1.5E+02 0.0032 20.7 6.0 43 51-101 151-193 (251)
354 PRK14273 phosphate ABC transpo 36.6 1.5E+02 0.0032 20.7 6.0 44 50-101 153-196 (254)
355 cd03253 ABCC_ATM1_transporter 36.5 1.4E+02 0.0031 20.5 6.1 26 50-75 140-165 (236)
356 smart00857 Resolvase Resolvase 36.3 91 0.002 19.6 4.2 62 15-79 16-79 (148)
357 COG1136 SalX ABC-type antimicr 36.3 1.6E+02 0.0034 21.0 5.8 24 50-73 145-168 (226)
358 PLN02656 tyrosine transaminase 36.3 47 0.001 25.1 3.2 35 43-78 180-214 (409)
359 TIGR03538 DapC_gpp succinyldia 36.2 49 0.0011 24.7 3.3 36 42-78 175-210 (393)
360 PRK06108 aspartate aminotransf 36.2 56 0.0012 24.1 3.6 36 42-78 168-203 (382)
361 PRK12414 putative aminotransfe 36.2 57 0.0012 24.4 3.7 35 42-77 172-206 (384)
362 cd03288 ABCC_SUR2 The SUR doma 36.1 1.5E+02 0.0033 20.8 5.7 25 50-74 159-183 (257)
363 COG3854 SpoIIIAA ncharacterize 36.1 34 0.00074 25.1 2.3 24 53-76 206-229 (308)
364 COG3842 PotA ABC-type spermidi 36.0 63 0.0014 24.6 3.8 51 18-73 112-162 (352)
365 PRK08912 hypothetical protein; 36.0 51 0.0011 24.6 3.4 34 42-76 169-202 (387)
366 cd03257 ABC_NikE_OppD_transpor 35.8 1.4E+02 0.003 20.3 5.4 44 50-101 148-191 (228)
367 cd03224 ABC_TM1139_LivF_branch 35.7 1.4E+02 0.003 20.2 5.8 42 52-101 137-178 (222)
368 cd00046 DEXDc DEAD-like helica 35.6 20 0.00043 21.5 1.0 30 50-79 86-117 (144)
369 PRK04781 histidinol-phosphate 35.6 39 0.00085 25.1 2.7 36 41-78 161-196 (364)
370 cd03249 ABC_MTABC3_MDL1_MDL2 M 35.6 1.5E+02 0.0032 20.4 6.0 44 50-101 142-185 (238)
371 PTZ00433 tyrosine aminotransfe 35.5 51 0.0011 24.9 3.3 35 43-78 188-222 (412)
372 PHA00520 packaging NTPase P4 35.4 26 0.00057 26.2 1.7 50 63-112 181-230 (330)
373 PRK04635 histidinol-phosphate 35.4 34 0.00075 25.2 2.4 32 42-76 157-188 (354)
374 PRK13538 cytochrome c biogenes 35.4 1.4E+02 0.003 20.1 5.8 44 50-101 132-175 (204)
375 cd00984 DnaB_C DnaB helicase C 35.3 76 0.0016 21.9 4.0 19 61-79 119-137 (242)
376 COG1110 Reverse gyrase [DNA re 35.2 32 0.00069 30.1 2.3 31 50-80 188-218 (1187)
377 PRK15424 propionate catabolism 35.2 45 0.00098 26.8 3.1 22 8-29 216-237 (538)
378 PTZ00035 Rad51 protein; Provis 35.2 53 0.0011 24.6 3.3 49 62-110 210-259 (337)
379 cd03287 ABC_MSH3_euk MutS3 hom 35.1 35 0.00076 24.0 2.2 22 52-75 99-120 (222)
380 KOG1969|consensus 35.1 55 0.0012 27.7 3.6 14 64-77 386-399 (877)
381 PRK01533 histidinol-phosphate 35.0 38 0.00082 25.3 2.5 33 42-76 161-193 (366)
382 PRK14809 histidinol-phosphate 35.0 37 0.0008 25.0 2.5 37 41-79 163-199 (357)
383 cd03252 ABCC_Hemolysin The ABC 34.6 1.5E+02 0.0033 20.3 6.1 44 50-101 141-184 (237)
384 PRK13645 cbiO cobalt transport 34.5 1.4E+02 0.0031 21.4 5.4 26 50-75 153-178 (289)
385 PRK05764 aspartate aminotransf 34.4 57 0.0012 24.2 3.4 33 43-76 175-207 (393)
386 PF14532 Sigma54_activ_2: Sigm 34.4 1.2E+02 0.0026 19.0 4.8 21 55-78 62-82 (138)
387 PF07903 PaRep2a: PaRep2a prot 34.3 99 0.0021 19.8 3.9 65 13-79 17-84 (122)
388 PRK14274 phosphate ABC transpo 34.3 1.6E+02 0.0036 20.6 6.1 44 50-101 158-201 (259)
389 cd03230 ABC_DR_subfamily_A Thi 34.2 1.4E+02 0.0029 19.6 5.3 41 53-101 101-141 (173)
390 KOG0258|consensus 34.0 65 0.0014 25.3 3.6 30 44-74 227-256 (475)
391 PF09895 DUF2122: RecB-family 33.9 46 0.00099 20.9 2.3 23 54-76 8-30 (106)
392 PRK09276 LL-diaminopimelate am 33.8 58 0.0013 24.2 3.4 35 43-78 177-211 (385)
393 PF00308 Bac_DnaA: Bacterial d 33.7 33 0.0007 23.9 1.9 16 65-80 97-112 (219)
394 cd03215 ABC_Carb_Monos_II This 33.7 1.4E+02 0.0031 19.7 5.7 37 57-101 114-150 (182)
395 PRK06855 aminotransferase; Val 33.6 57 0.0012 25.0 3.3 36 42-78 181-216 (433)
396 TIGR01117 mmdA methylmalonyl-C 33.6 1.6E+02 0.0034 23.6 5.8 26 50-75 335-361 (512)
397 PRK06836 aspartate aminotransf 33.5 68 0.0015 24.1 3.7 37 42-78 178-219 (394)
398 PRK14087 dnaA chromosomal repl 33.2 68 0.0015 25.0 3.7 17 64-80 205-221 (450)
399 PRK14245 phosphate ABC transpo 33.1 1.7E+02 0.0037 20.4 6.1 44 50-101 149-192 (250)
400 PRK08361 aspartate aminotransf 32.9 74 0.0016 23.8 3.8 36 42-78 176-211 (391)
401 PF07555 NAGidase: beta-N-acet 32.8 1.6E+02 0.0035 21.9 5.5 98 7-105 43-149 (306)
402 PRK05449 aspartate alpha-decar 32.7 39 0.00085 21.9 1.9 21 60-80 97-117 (126)
403 KOG1434|consensus 32.6 46 0.001 24.7 2.5 64 50-113 192-260 (335)
404 PRK11701 phnK phosphonate C-P 32.6 1.8E+02 0.0038 20.4 5.6 27 50-76 154-180 (258)
405 PRK11432 fbpC ferric transport 32.5 2E+02 0.0043 21.6 6.0 25 50-74 139-163 (351)
406 TIGR01189 ccmA heme ABC export 32.3 1.6E+02 0.0034 19.7 5.6 42 52-101 132-173 (198)
407 PRK14275 phosphate ABC transpo 32.2 1.9E+02 0.0042 20.8 6.1 45 50-102 185-229 (286)
408 cd03278 ABC_SMC_barmotin Barmo 32.2 1.4E+02 0.003 20.3 4.8 14 64-77 134-147 (197)
409 PRK14263 phosphate ABC transpo 32.1 1.6E+02 0.0034 20.9 5.2 44 50-101 152-195 (261)
410 PLN02376 1-aminocyclopropane-1 32.1 55 0.0012 25.8 3.1 35 43-78 210-244 (496)
411 PRK07550 hypothetical protein; 32.1 69 0.0015 23.8 3.5 35 43-78 174-208 (386)
412 PHA00012 I assembly protein 32.1 59 0.0013 24.8 3.1 22 64-85 80-101 (361)
413 PRK10851 sulfate/thiosulfate t 31.9 2E+02 0.0044 21.6 6.0 25 50-74 139-163 (353)
414 PRK14235 phosphate transporter 31.8 1.9E+02 0.0041 20.5 6.0 44 50-101 166-209 (267)
415 COG3950 Predicted ATP-binding 31.8 54 0.0012 25.4 2.8 16 63-78 293-308 (440)
416 PF00488 MutS_V: MutS domain V 31.6 60 0.0013 22.9 3.0 22 51-74 110-131 (235)
417 PRK10575 iron-hydroxamate tran 31.6 1.6E+02 0.0036 20.7 5.3 44 50-101 150-193 (265)
418 PF09807 DUF2348: Uncharacteri 31.5 1.5E+02 0.0033 21.2 5.1 27 53-79 116-149 (249)
419 PRK09580 sufC cysteine desulfu 31.5 1.8E+02 0.0039 20.1 5.8 25 50-74 148-172 (248)
420 COG0002 ArgC Acetylglutamate s 31.3 1E+02 0.0023 23.5 4.3 41 33-73 231-281 (349)
421 cd03295 ABC_OpuCA_Osmoprotecti 31.2 1.8E+02 0.0039 20.1 5.4 44 50-101 138-181 (242)
422 PF02261 Asp_decarbox: Asparta 31.1 42 0.00091 21.4 1.9 15 60-74 97-111 (116)
423 PRK11607 potG putrescine trans 31.1 2E+02 0.0043 21.9 5.9 25 50-74 152-176 (377)
424 TIGR03522 GldA_ABC_ATP gliding 31.0 2.1E+02 0.0045 20.8 8.1 25 50-74 136-160 (301)
425 TIGR03740 galliderm_ABC gallid 31.0 1.7E+02 0.0038 19.9 5.7 43 51-101 128-170 (223)
426 TIGR02323 CP_lyasePhnK phospho 31.0 1.9E+02 0.004 20.2 5.5 25 50-74 151-175 (253)
427 PRK06358 threonine-phosphate d 31.0 63 0.0014 23.9 3.1 36 42-78 151-186 (354)
428 KOG0326|consensus 30.9 50 0.0011 25.3 2.5 30 65-102 227-256 (459)
429 cd03268 ABC_BcrA_bacitracin_re 30.8 1.7E+02 0.0037 19.7 5.8 23 52-74 131-153 (208)
430 cd03297 ABC_ModC_molybdenum_tr 30.8 1.7E+02 0.0037 19.7 6.4 25 50-74 134-158 (214)
431 PRK15112 antimicrobial peptide 30.7 1.7E+02 0.0037 20.7 5.2 44 50-101 152-195 (267)
432 cd01131 PilT Pilus retraction 30.7 54 0.0012 22.3 2.6 22 53-74 62-83 (198)
433 TIGR03265 PhnT2 putative 2-ami 30.7 2E+02 0.0044 21.6 5.8 25 50-74 137-161 (353)
434 COG1116 TauB ABC-type nitrate/ 30.6 1.7E+02 0.0036 21.3 5.1 24 50-73 133-156 (248)
435 TIGR03801 asp_4_decarbox aspar 30.6 74 0.0016 25.5 3.6 36 43-78 251-287 (521)
436 PRK14244 phosphate ABC transpo 30.6 1.9E+02 0.0041 20.1 6.1 44 51-102 153-196 (251)
437 PRK14239 phosphate transporter 30.5 1.9E+02 0.0041 20.1 5.9 44 50-101 151-194 (252)
438 PRK10938 putative molybdenum t 30.5 2.2E+02 0.0048 22.1 6.2 44 50-101 404-447 (490)
439 PRK14243 phosphate transporter 30.3 2E+02 0.0043 20.3 6.0 25 50-74 154-178 (264)
440 PF03610 EIIA-man: PTS system 30.3 44 0.00096 20.6 1.9 55 18-72 9-65 (116)
441 PRK14268 phosphate ABC transpo 30.2 2E+02 0.0042 20.2 6.0 44 50-101 157-200 (258)
442 PRK08175 aminotransferase; Val 30.2 71 0.0015 23.9 3.3 35 42-77 174-208 (395)
443 PRK10418 nikD nickel transport 30.2 1.8E+02 0.0039 20.4 5.2 44 50-101 143-186 (254)
444 PRK13631 cbiO cobalt transport 30.2 2.2E+02 0.0047 21.0 5.8 25 50-74 179-203 (320)
445 COG0396 sufC Cysteine desulfur 30.1 2.2E+02 0.0047 20.7 9.2 59 17-78 117-175 (251)
446 PRK14262 phosphate ABC transpo 30.1 1.9E+02 0.0041 20.1 6.0 44 50-101 149-192 (250)
447 PRK08363 alanine aminotransfer 30.1 79 0.0017 23.7 3.6 34 43-77 177-210 (398)
448 cd03226 ABC_cobalt_CbiO_domain 30.0 1.7E+02 0.0038 19.6 5.8 44 50-101 129-172 (205)
449 PRK01002 nickel responsive reg 30.0 15 0.00033 24.1 -0.3 33 71-103 16-48 (141)
450 PRK14266 phosphate ABC transpo 29.9 1.9E+02 0.0042 20.0 6.0 44 50-101 149-192 (250)
451 PRK07993 DNA polymerase III su 29.9 1.3E+02 0.0028 22.5 4.6 45 50-106 89-137 (334)
452 PRK10895 lipopolysaccharide AB 29.8 1.9E+02 0.0041 19.9 5.8 44 50-101 140-183 (241)
453 TIGR01140 L_thr_O3P_dcar L-thr 29.8 71 0.0015 23.3 3.2 33 43-76 136-168 (330)
454 PRK13541 cytochrome c biogenes 29.7 1.7E+02 0.0038 19.5 5.9 27 50-76 126-152 (195)
455 COG1120 FepC ABC-type cobalami 29.5 73 0.0016 23.2 3.1 25 50-74 141-165 (258)
456 PRK14242 phosphate transporter 29.5 2E+02 0.0043 20.0 6.1 43 51-101 153-195 (253)
457 PRK04870 histidinol-phosphate 29.4 58 0.0013 23.9 2.7 31 42-76 163-193 (356)
458 TIGR03269 met_CoM_red_A2 methy 29.2 2.6E+02 0.0056 22.0 6.4 25 50-74 171-195 (520)
459 PF00270 DEAD: DEAD/DEAH box h 29.1 24 0.00053 22.5 0.6 47 50-104 102-150 (169)
460 PRK11000 maltose/maltodextrin 29.1 2.4E+02 0.0051 21.3 6.0 25 50-74 136-160 (369)
461 KOG0061|consensus 29.1 3.1E+02 0.0066 22.5 6.9 11 63-73 186-196 (613)
462 TIGR02533 type_II_gspE general 29.1 1.4E+02 0.0031 23.6 4.9 23 6-28 217-239 (486)
463 COG0864 NikR Predicted transcr 29.0 17 0.00038 23.8 -0.1 36 71-106 16-51 (136)
464 PF11079 YqhG: Bacterial prote 29.0 71 0.0015 23.3 2.9 29 50-78 84-112 (260)
465 KOG1942|consensus 28.9 26 0.00056 26.6 0.7 15 63-77 294-308 (456)
466 PRK10744 pstB phosphate transp 28.8 2.1E+02 0.0045 20.1 6.1 44 50-101 159-202 (260)
467 PLN03186 DNA repair protein RA 28.8 69 0.0015 24.2 3.0 54 59-112 212-266 (342)
468 TIGR01978 sufC FeS assembly AT 28.7 2E+02 0.0043 19.8 5.9 44 50-101 147-190 (243)
469 PRK11650 ugpC glycerol-3-phosp 28.7 2.5E+02 0.0054 21.1 6.0 25 50-74 137-161 (356)
470 PF13499 EF-hand_7: EF-hand do 28.7 82 0.0018 16.8 2.7 50 54-103 2-51 (66)
471 PRK12422 chromosomal replicati 28.6 45 0.00098 26.0 2.1 17 64-80 201-217 (445)
472 COG0410 LivF ABC-type branched 28.6 1.1E+02 0.0023 22.1 3.8 41 57-108 144-186 (237)
473 PRK14255 phosphate ABC transpo 28.5 2.1E+02 0.0045 19.9 5.9 44 50-101 151-194 (252)
474 PRK11388 DNA-binding transcrip 28.4 55 0.0012 26.5 2.6 23 7-29 321-343 (638)
475 PRK09082 methionine aminotrans 28.4 85 0.0018 23.4 3.5 35 43-78 174-208 (386)
476 PRK15056 manganese/iron transp 28.4 2.2E+02 0.0048 20.2 5.8 44 50-101 145-188 (272)
477 PRK09700 D-allose transporter 28.3 2.6E+02 0.0056 21.9 6.2 54 50-113 412-465 (510)
478 KOG0964|consensus 28.3 58 0.0013 28.4 2.7 42 53-102 1107-1148(1200)
479 TIGR02770 nickel_nikD nickel i 28.2 2E+02 0.0044 19.7 5.3 26 50-75 128-153 (230)
480 PRK03158 histidinol-phosphate 28.1 69 0.0015 23.5 2.9 35 42-78 161-195 (359)
481 TIGR02640 gas_vesic_GvpN gas v 28.0 51 0.0011 23.5 2.2 13 65-77 105-117 (262)
482 PF05931 AgrD: Staphylococcal 28.0 74 0.0016 16.8 2.2 21 54-74 11-34 (45)
483 PRK11300 livG leucine/isoleuci 28.0 2.1E+02 0.0046 19.9 5.9 44 50-101 156-199 (255)
484 TIGR00708 cobA cob(I)alamin ad 27.9 87 0.0019 21.3 3.1 27 51-77 79-109 (173)
485 cd03223 ABCD_peroxisomal_ALDP 27.9 1.8E+02 0.0038 19.0 6.0 25 51-75 95-119 (166)
486 PRK10619 histidine/lysine/argi 27.8 2.2E+02 0.0047 19.9 5.9 45 50-102 155-199 (257)
487 cd03261 ABC_Org_Solvent_Resist 27.8 87 0.0019 21.6 3.3 25 50-74 139-163 (235)
488 COG0444 DppD ABC-type dipeptid 27.8 2.7E+02 0.0058 21.0 8.2 25 50-74 156-180 (316)
489 cd03228 ABCC_MRP_Like The MRP 27.7 92 0.002 20.4 3.2 19 56-74 105-123 (171)
490 cd03259 ABC_Carb_Solutes_like 27.7 91 0.002 21.1 3.3 25 50-74 133-157 (213)
491 PHA02562 46 endonuclease subun 27.6 2.1E+02 0.0046 22.5 5.7 11 64-74 495-505 (562)
492 PRK14248 phosphate ABC transpo 27.5 2.2E+02 0.0049 20.0 6.0 45 50-102 167-211 (268)
493 PF05582 Peptidase_U57: YabG p 27.5 1.5E+02 0.0033 22.0 4.5 38 46-83 134-172 (287)
494 cd03246 ABCC_Protease_Secretio 27.4 1.8E+02 0.004 19.0 5.9 43 51-101 100-142 (173)
495 cd03217 ABC_FeS_Assembly ABC-t 27.4 93 0.002 21.0 3.3 43 51-101 108-150 (200)
496 cd03284 ABC_MutS1 MutS1 homolo 27.4 72 0.0016 22.1 2.8 12 63-74 107-118 (216)
497 PRK05642 DNA replication initi 27.3 56 0.0012 22.9 2.2 14 67-80 99-112 (234)
498 COG2274 SunT ABC-type bacterio 27.3 2.2E+02 0.0048 23.8 5.9 26 50-75 612-637 (709)
499 PRK06871 DNA polymerase III su 27.3 1.6E+02 0.0034 22.1 4.6 46 50-107 88-137 (325)
500 PRK09544 znuC high-affinity zi 27.3 2.2E+02 0.0048 20.0 5.3 26 50-75 123-148 (251)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.9e-32 Score=200.46 Aligned_cols=110 Identities=48% Similarity=0.820 Sum_probs=103.2
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||||+++++++|++.+++ ++||++|.+.|+.||+||||
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 57999999999999999999999999 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.+|++|+.|++++||||||||||+++++|.++ +++.+..|.+-+||+|||||...++|-||
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 78999999999999999999999999999999754 44578899999999999999999888876
No 2
>KOG0730|consensus
Probab=99.98 E-value=2.5e-32 Score=211.04 Aligned_cols=110 Identities=41% Similarity=0.772 Sum_probs=104.4
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|+++|+||||++++|.+|++.|.| ++||+.|.++|++||+||||
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 467899999999999999999999999 99999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
||++|+++|++||+.+|||+||||+|++++.|+++. ++...|++|+||++|||+...++|+||
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccccCcEEEE
Confidence 899999999999999999999999999999998544 588899999999999999999999886
No 3
>KOG0733|consensus
Probab=99.97 E-value=5.5e-31 Score=202.69 Aligned_cols=109 Identities=36% Similarity=0.692 Sum_probs=103.8
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
..|.|+|+|||++++++.+|+..|.+ +++|+.|+++|+.+|.|+||
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 35899999999999999999998888 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
||+.+|++|..||+++||||||||+|+|+++|+.++ ++...|++||||++|||+....+|+||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccceEEE
Confidence 899999999999999999999999999999999877 667889999999999999999999986
No 4
>KOG0736|consensus
Probab=99.97 E-value=1.8e-30 Score=203.50 Aligned_cols=111 Identities=37% Similarity=0.697 Sum_probs=101.3
Q ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec-------------------------------
Q psy5205 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL------------------------------- 49 (113)
Q Consensus 2 ~~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl------------------------------- 49 (113)
.|.-|+|+|+||||++++|.+|.+.|.+ ++||++|.. |.++..||||
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 5788999999999999999999999999 999999975 6777788888
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCC-chhHHHHHHHHHHhcCCC--CCCceEEc
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFH--QNEGVVVL 113 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~-~~~~~i~~~lL~~ld~~~--~~~~v~vi 113 (113)
||+|+|++|++||+.+||||||||+|+++++|+.++++ +.++|+|+|||.+|||+. ..+.|+||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 89999999999999999999999999999999976654 789999999999999997 56778876
No 5
>KOG0734|consensus
Probab=99.96 E-value=4.1e-29 Score=190.41 Aligned_cols=111 Identities=75% Similarity=1.208 Sum_probs=104.0
Q ss_pred CCCC-CCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec-------------------------------
Q psy5205 2 DPEE-INITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------------------- 49 (113)
Q Consensus 2 ~~~~-~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl------------------------------- 49 (113)
+|+. .+++|+|+-|.++.|++|++++.++++|..|.++|.+.|+||||
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF 373 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF 373 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch
Confidence 3444 38999999999999999999999999999999999999999999
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+++|++|+.|++++||||||||+|+++++|.....+ +.+..+||||.+|||+.++.+|+||
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEE
Confidence 78999999999999999999999999999999877645 8999999999999999999999986
No 6
>KOG0733|consensus
Probab=99.95 E-value=1.3e-27 Score=184.12 Aligned_cols=109 Identities=40% Similarity=0.766 Sum_probs=100.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
..++++|+||||++.+..+|.+++..++||+.|..+|+.||+|+||
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 4458999999999999999999999999999999999999999999
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC----CceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN----EGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~----~~v~vi 113 (113)
||++||++|++|+.++|||+||||||+++++|...+ ....+|+|.|||+.||++... +.|+||
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ-REMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH-HHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 899999999999999999999999999999998755 678899999999999999543 667776
No 7
>KOG0727|consensus
Probab=99.95 E-value=1.8e-27 Score=169.10 Aligned_cols=111 Identities=39% Similarity=0.717 Sum_probs=103.0
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.++|.+++.||||++-+|+++++.+++ +.|.++|+..|+.||+|+|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 467999999999999999999999999 99999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCC--CCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~--~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.+|.+|..|++++|+|+||||+|+++.+|-+ ++.+.+..|++-+||++|||+....+|-||
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvi 298 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVI 298 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEE
Confidence 6788999999999999999999999999999953 344678899999999999999999888775
No 8
>KOG0739|consensus
Probab=99.93 E-value=2.2e-26 Score=166.19 Aligned_cols=110 Identities=35% Similarity=0.614 Sum_probs=98.8
Q ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec-------------------------------
Q psy5205 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL------------------------------- 49 (113)
Q Consensus 2 ~~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl------------------------------- 49 (113)
..++|++.|+||+|++..|+.|++.+.+ ++.|.+|.. +..|.+|+||
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 4689999999999999999999998888 999999874 3567899999
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC-CCCceEEc
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEGVVVL 113 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~-~~~~v~vi 113 (113)
||+.++.+|++||++.|+||||||||++|++|+.+. +...+||..+||.||+|+. .+.+|+|+
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 899999999999999999999999999999998766 7788999999999999994 55677764
No 9
>KOG0735|consensus
Probab=99.93 E-value=4.3e-26 Score=178.08 Aligned_cols=106 Identities=39% Similarity=0.699 Sum_probs=100.7
Q ss_pred CCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec------------------------------------
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL------------------------------------ 49 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl------------------------------------ 49 (113)
.++|+||||+.++|+.|++.+.+ -++|..|.+.+++.+.||||
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 49999999999999999999999 99999999999999999999
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 --GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 --~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
||+++|.+|.+|+..+||||||||+|+++++|+.++ .+..+|++||||++|||..+-.+|+|+
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhccccccceEEEE
Confidence 899999999999999999999999999999998766 668899999999999999999999875
No 10
>KOG0726|consensus
Probab=99.93 E-value=7.3e-26 Score=163.19 Aligned_cols=109 Identities=41% Similarity=0.716 Sum_probs=99.1
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
.|+-+|+||||++.+.++|.+.+++ +.||+.|..+|++||+|++|
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 4778999999999999999999999 99999999999999999999
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.+|++|..|.+++|+|+||||||+++.+|-++++ ..+..|..-+||+|+||+.+...|-||
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvi 328 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 328 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEE
Confidence 6889999999999999999999999999999965543 356778888999999999988877765
No 11
>KOG0738|consensus
Probab=99.92 E-value=4e-25 Score=163.60 Aligned_cols=103 Identities=38% Similarity=0.551 Sum_probs=95.5
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
-.+|++.|+||.|+++.|+-|++++.+ +.-|+.|+.. .+|.+|+|+
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 357899999999999999999999988 9999988753 577899999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
|||.+|-+|++||.++|++|||||||+||.+|+++++|+.++|+.++||.||||+.+
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~ 345 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG 345 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc
Confidence 899999999999999999999999999999999999899999999999999999954
No 12
>KOG0731|consensus
Probab=99.92 E-value=1.2e-24 Score=171.83 Aligned_cols=110 Identities=58% Similarity=0.932 Sum_probs=100.2
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
.++.++|+|++|.++.|++|++++.+|+||+.|.++|.+.|+|+||
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 4556999999999999999999999999999999999999999999
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccC---CCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT---NSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~---~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+..+++.+|..|+.++|||+||||+|+++..|+ ..+.+.+....+||||.+|||+...++|+|+
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 578899999999999999999999999999995 2234556678999999999999988888875
No 13
>KOG0652|consensus
Probab=99.91 E-value=3.5e-24 Score=152.91 Aligned_cols=111 Identities=40% Similarity=0.686 Sum_probs=101.9
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.++|+-+|+||||++.+.++|-+.+.+ +.|++.|.++|++||+|+|+
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 467999999999999999999998888 99999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC--CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~--~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+.+|..|+.|++.+|+|+||||+|+++.+|.++. ++.+..|..-+||+|+||+.++..|-||
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 789999999999999999999999999999997554 3467889999999999999999888775
No 14
>KOG0728|consensus
Probab=99.91 E-value=3.3e-24 Score=152.35 Aligned_cols=109 Identities=39% Similarity=0.720 Sum_probs=99.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
.|..+|+-|||++.+.++|++.+++ .+||++|..+|+..|+|+||
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 4778999999999999999999999 99999999999999999999
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+.+|++|-+||+++|+|+|.||+|+++.+|..+ +++++..|..-+||+|+||+...+++-||
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 67889999999999999999999999999999633 34577889999999999999988888775
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.5e-24 Score=164.44 Aligned_cols=111 Identities=59% Similarity=0.999 Sum_probs=100.5
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+....++|+|++|.++.|+++.+++..+++|..|.++|..-|+|+||
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 34578999999999999999999999999999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+.+|++|.+|++++|||+||||+|+++..|+.+ +++.+-...+||+|++|||+..+.+|+||
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivi 292 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVI 292 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEE
Confidence 67899999999999999999999999999999743 33445557999999999999988888875
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-23 Score=160.65 Aligned_cols=110 Identities=45% Similarity=0.760 Sum_probs=102.0
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|.++|+|++|++.+|+.+++.+.+ +.+++.|.++++.+++|+||
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 467899999999999999999999999 99999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+|++++++|..|++.+||||||||+|++++.|+.+. ++..+|++++||++||++...++|+||
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCccCceEEE
Confidence 899999999999999999999999999999998766 333479999999999999999998875
No 17
>KOG0729|consensus
Probab=99.90 E-value=2.1e-23 Score=149.38 Aligned_cols=110 Identities=41% Similarity=0.749 Sum_probs=101.0
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
++|.+++.|+||..++.+.|++.++. +-||+.|.++|+.||+|+|+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 67999999999999999999999999 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+.+|++|++|+....||+||||+|++++.|-+. +++++..|..-++++||||+...+++-|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 67889999999999999999999999999999543 44678889999999999999888877663
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=3.9e-22 Score=159.48 Aligned_cols=110 Identities=41% Similarity=0.753 Sum_probs=101.4
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|.++|+||+|++.+|++|++.+.+ +++++.|.++|.++|+|+||
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 35789999999999999999999998 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|+.|++.+||||||||+|+++++|+....+...++++|+||++|||+...++++||
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 6899999999999999999999999999999986655667789999999999999887888775
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.88 E-value=5.4e-22 Score=149.35 Aligned_cols=111 Identities=41% Similarity=0.741 Sum_probs=98.7
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|+++|+||||++.+|++|++.+.+ +.+|+.|.++|+.+|+|+||
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 467999999999999999999999988 99999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC--CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~--~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++++|..|+.++||||||||+|+++.+|.+.. .+....+++.+||++||++....+++||
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI 288 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVI 288 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 568899999999999999999999999999885433 2345678999999999999877777664
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=143.69 Aligned_cols=106 Identities=43% Similarity=0.798 Sum_probs=94.5
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec-----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl----------------------------------- 49 (113)
.++++++|++|.++.|+..+-+..++.+|+.|..| .|+.+|+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 46789999999999999999999999999999887 4567777
Q ss_pred ---hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ---GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ---~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+.|+++|+.|++.+|||+||||+|+++-+|.-..-.+..+.++|+||++|||++.+.+|+.|
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 6789999999999999999999999999999975544566789999999999999999888765
No 21
>KOG0737|consensus
Probab=99.87 E-value=4.3e-22 Score=146.43 Aligned_cols=112 Identities=37% Similarity=0.631 Sum_probs=100.7
Q ss_pred CCCCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcC-CCCCceeec-----------------------------
Q psy5205 1 VDPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLG-GKLPKGVLL----------------------------- 49 (113)
Q Consensus 1 ~~~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g-~~~~~giLl----------------------------- 49 (113)
|.|..-.++|+||+|++.+++++++.+.+ +++|++|...+ .+|++||||
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 46788899999999999999999998888 99999998554 778999999
Q ss_pred ---------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCc--eEEc
Q psy5205 50 ---------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG--VVVL 113 (113)
Q Consensus 50 ---------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~--v~vi 113 (113)
++|.++.+|..|.+.+|||+||||+|++.+.| .+++|+....+.|||...+||+.++.+ |+|+
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 78999999999999999999999999999999 566688899999999999999977665 6653
No 22
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.86 E-value=1.2e-21 Score=150.92 Aligned_cols=111 Identities=33% Similarity=0.619 Sum_probs=98.8
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|.++|+||+|++.+++++++.+.+ +.+++.|..+|+++|+|+||
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 356899999999999999999999988 99999999999999999999
Q ss_pred ----------------hHHHHHHHHHHHHhC----CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCc
Q psy5205 50 ----------------GARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 109 (113)
Q Consensus 50 ----------------~e~~l~~~F~~A~~~----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~ 109 (113)
++++++.+|+.|++. .||||||||+|+++++|+.+.++...++++++||++||++...++
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 356789999999864 699999999999999998765566678999999999999988777
Q ss_pred eEEc
Q psy5205 110 VVVL 113 (113)
Q Consensus 110 v~vi 113 (113)
++||
T Consensus 334 ViVI 337 (512)
T TIGR03689 334 VIVI 337 (512)
T ss_pred eEEE
Confidence 7775
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.84 E-value=1.2e-20 Score=145.41 Aligned_cols=112 Identities=61% Similarity=0.987 Sum_probs=99.5
Q ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 2 ~~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.++.|.++|+||+|++++|+++++++.++++++.|.++|.++|+|+||
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 356789999999999999999999999999999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|+.|+.++||||||||+|+++.+|..+ +.+....+++|+||++||++.++++++||
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI 197 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVI 197 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEE
Confidence 46789999999999999999999999999988753 22445678999999999999888778775
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.83 E-value=6.2e-20 Score=137.90 Aligned_cols=110 Identities=48% Similarity=0.806 Sum_probs=97.2
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||+|++++++++++.+.+ +.+++.|..+|+.+|+|+||
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 46889999999999999999999988 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++.+|+.|+.++||||||||+|+++++|++.+. +....+.+.+||+++|++...+++.||
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 4678999999999999999999999999999875442 245568889999999999877777665
No 25
>KOG0732|consensus
Probab=99.81 E-value=8.3e-20 Score=148.01 Aligned_cols=107 Identities=34% Similarity=0.582 Sum_probs=100.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec-----------------------------------
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL----------------------------------- 49 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl----------------------------------- 49 (113)
..++|++|||++.++.++++.+.. +.+|+.|.++++.||+|+|+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 468999999999999999999988 99999999999999999999
Q ss_pred --------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 --------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 --------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
.|+.++-+|++|++..|+|+||||||.+++.|++-. ......++++||..|||+.+.+.|+||
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsRgqVvvi 410 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSRGQVVVI 410 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCCCceEEE
Confidence 789999999999999999999999999999998765 445678999999999999999999886
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=137.78 Aligned_cols=110 Identities=39% Similarity=0.704 Sum_probs=96.3
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|.++|+||+|++.++++|++.+.+ +.+++.|..+|+.+|+|+||
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45789999999999999999999988 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC--CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~--~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++++|..|+.++||||||||+|+++.+|.... ......+.+.+||++||++....++.||
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 467799999999999999999999999999886433 2345568889999999999776666664
No 27
>KOG0651|consensus
Probab=99.80 E-value=6.9e-20 Score=132.83 Aligned_cols=108 Identities=41% Similarity=0.720 Sum_probs=96.7
Q ss_pred CCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec-----------------------------------
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL----------------------------------- 49 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl----------------------------------- 49 (113)
.+++|+.++|+-++..++++.+.. +.+|+++.+.|++||+|+++
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 368999999999999999999999 99999999999999999999
Q ss_pred ---hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC--CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ---GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ---~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~--~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+.||+.|..|+++.|||+|+||+|+++++|.+.+ .+.+..+.+-+||.+|||+.....|-+|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~I 275 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTI 275 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEE
Confidence 678999999999999999999999999999995433 3467778889999999999877766543
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.78 E-value=1.5e-18 Score=136.90 Aligned_cols=111 Identities=57% Similarity=0.991 Sum_probs=97.2
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.++.++|+||+|++++++++.+++..+++++.|..+|..+|+|+||
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34567999999999999999999999999999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.+.++.+|+.|+.++||||||||+|+++.+|+.+ +.+....+++++||.+||++..+.+++||
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 35678999999999999999999999999888643 23445668999999999999887777765
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.76 E-value=5.4e-18 Score=130.45 Aligned_cols=105 Identities=25% Similarity=0.435 Sum_probs=88.6
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec-----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl----------------------------------- 49 (113)
.++++|+||||++.+|+++++....+ +..+.++|+++|+|+||
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 46789999999999999998865443 34567789999999999
Q ss_pred ---hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ---GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ---~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|+.|+..+||||||||+|.++.++.+.++++...+++++||++|+. .+++|+||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vI 364 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVV 364 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEE
Confidence 689999999999999999999999999998776655567889999999999995 34556654
No 30
>KOG0730|consensus
Probab=99.75 E-value=3.7e-18 Score=132.90 Aligned_cols=105 Identities=31% Similarity=0.594 Sum_probs=98.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec-----------------------------------
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL----------------------------------- 49 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl----------------------------------- 49 (113)
+.++ .+++|...+.+.+++.+.+ ++++..|...|.++|+|+|+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5567 8999999999999999999 99999999999999999999
Q ss_pred ---hHHHHHHHHHHHHhCC-CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ---GARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ---~e~~l~~~F~~A~~~~-p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++++|++|++|.+++ |+++||||+|+++++|..... ..+|++.++++.||++....+++||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~~vivl 324 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDAKVIVL 324 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcCcEEEE
Confidence 8999999999999999 999999999999999987763 6899999999999999988888875
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=9.4e-18 Score=134.40 Aligned_cols=108 Identities=40% Similarity=0.747 Sum_probs=97.3
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
.++++|+||+|++.+++++++.+.+ +.+|+.|..+|+.+|+|+||
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999998 99999999999999999999
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|+.|..+.|+||||||+|+++++|+... ++..++++++|++.||++.....++||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhccccCCCEEEE
Confidence 467899999999999999999999999999987544 445679999999999999877777764
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.75 E-value=1e-17 Score=124.74 Aligned_cols=110 Identities=47% Similarity=0.802 Sum_probs=95.1
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|.++|+||+|+++++++|++.+.. +.+++.|..+|+.+|+|+||
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 56889999999999999999999988 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++.+|..|+..+|+||||||+|+++.+|.+... +....+.+.+++.++|++...+++.||
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI 265 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVI 265 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 4567899999999999999999999999988864432 334567889999999998766666654
No 33
>KOG0741|consensus
Probab=99.73 E-value=1.2e-17 Score=128.16 Aligned_cols=109 Identities=28% Similarity=0.487 Sum_probs=94.4
Q ss_pred CCCCCCCc--ccccHHHHHHH-HHHHHH-hcChhhHhhcCCCCCceeec-------------------------------
Q psy5205 5 EINITFKD--VRGVDEAKQEL-KEIVEF-LKNPEKFSTLGGKLPKGVLL------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~d--i~G~~~~k~~l-~~~i~~-~~~~~~~~~~g~~~~~giLl------------------------------- 49 (113)
+|...|++ |||++.....+ +++... +..|+..+++|++..+|+||
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46677776 68998888777 666666 88999999999999999999
Q ss_pred --------hHHHHHHHHHHHHh--------CCCeEEEEccccccccccCCCCC-CchhHHHHHHHHHHhcCCCCCCceEE
Q psy5205 50 --------GARRVRDLFKAAKD--------RTPCVVFIDEIDSVGAKRTNSVL-HPYANQTINQLLAEMDGFHQNEGVVV 112 (113)
Q Consensus 50 --------~e~~l~~~F~~A~~--------~~p~ilfiDEiD~l~~~R~~~~~-~~~~~~i~~~lL~~ld~~~~~~~v~v 112 (113)
||+|+|++|+.|.+ ..-.|+.|||+|++|..|++..+ .+..+.+|||||+.|||+.+-++++|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILV 372 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILV 372 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEE
Confidence 89999999999963 34679999999999999986654 67889999999999999999999998
Q ss_pred c
Q psy5205 113 L 113 (113)
Q Consensus 113 i 113 (113)
|
T Consensus 373 I 373 (744)
T KOG0741|consen 373 I 373 (744)
T ss_pred E
Confidence 7
No 34
>KOG0740|consensus
Probab=99.72 E-value=2.1e-17 Score=124.48 Aligned_cols=107 Identities=37% Similarity=0.597 Sum_probs=93.5
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
.+++.|+|++|++..|+.+.+++.+ +..++.|...- .|++|+||
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 4679999999999999999999988 88899998653 56688888
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC--CCCceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH--QNEGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~--~~~~v~vi 113 (113)
+|+.+|.+|.-|+..+|+|+||||+|+++.+| ..+.+...+|+..+||.++++.. .+++|+||
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVI 294 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEE
Confidence 78999999999999999999999999999999 44557888999999999999985 45567664
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.71 E-value=6.1e-17 Score=128.22 Aligned_cols=111 Identities=55% Similarity=0.982 Sum_probs=97.4
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
|.....+|+|++|.+..++++.+++.++.++..|..++...|+|+|+
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 44567889999999999999999999999999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|+.|+..+||||||||+|+++.+|+.+ +.+....+++|+||.+||++.++.+++||
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 46789999999999999999999999999998753 33455678999999999999888888775
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.65 E-value=6.8e-16 Score=114.88 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=72.8
Q ss_pred CCCCCcc-cccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec-----------------------------------
Q psy5205 7 NITFKDV-RGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL----------------------------------- 49 (113)
Q Consensus 7 ~~~~~di-~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl----------------------------------- 49 (113)
+.+|+++ +|+--.+..+.+++.. .++.-. ..|+++|+|++|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~--~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLA--LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhh--ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 4567777 7777777666666655 333332 267899999999
Q ss_pred ---hHHHHHHHHHHHHhC-----CCeEEEEccccccccccCCCCCCchhHHHH-HHHHHHhcCC
Q psy5205 50 ---GARRVRDLFKAAKDR-----TPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGF 104 (113)
Q Consensus 50 ---~e~~l~~~F~~A~~~-----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~-~~lL~~ld~~ 104 (113)
+|++||++|..|++. +||||||||+|+++++|++++ +...++++ ++||++||+.
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~-~tv~~qiV~~tLLnl~D~p 251 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ-YTVNNQMVNGTLMNIADNP 251 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC-cchHHHHHHHHHHHHhcCC
Confidence 899999999999864 699999999999999998544 44445665 8999999974
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.17 E-value=6.7e-11 Score=101.25 Aligned_cols=53 Identities=17% Similarity=0.422 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC---CCCceEEc
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH---QNEGVVVL 113 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~---~~~~v~vi 113 (113)
|+.+|+.|++++||||||||||+++.+.+ ....+++||++|||.. +..+|+||
T Consensus 1721 Ir~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVI 1776 (2281)
T CHL00206 1721 ITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVI 1776 (2281)
T ss_pred HHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEE
Confidence 78899999999999999999999987521 1124899999999874 45677775
No 38
>KOG0744|consensus
Probab=99.00 E-value=5.7e-10 Score=82.14 Aligned_cols=64 Identities=27% Similarity=0.439 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhC-----CCeEEEEccccccccccCC---CCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 GARRVRDLFKAAKDR-----TPCVVFIDEIDSVGAKRTN---SVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~-----~p~ilfiDEiD~l~~~R~~---~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
|.|++.++|++..+. .-..++|||+++++..|.+ +++....-|+||++|+|||.+++..+|+++
T Consensus 230 SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL 301 (423)
T KOG0744|consen 230 SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLIL 301 (423)
T ss_pred hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEE
Confidence 789999999988643 2345669999999999943 333455669999999999999999999874
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=98.99 E-value=3.2e-09 Score=77.26 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=64.7
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCc-e--eec--------------------------------------
Q psy5205 11 KDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPK-G--VLL-------------------------------------- 49 (113)
Q Consensus 11 ~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~-g--iLl-------------------------------------- 49 (113)
++++|++++|++|++++.++..+..+.+.|..+++ | ++|
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 47999999999999999886667777888876653 4 455
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
++++.+++|+.| .++||||||+|.++..++. +...+.+++.|+..|+.-
T Consensus 103 ~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ 158 (287)
T ss_pred HHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC
Confidence 223344555554 4689999999999865432 234578889999999854
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.90 E-value=8.8e-09 Score=65.47 Aligned_cols=63 Identities=37% Similarity=0.658 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhCC-CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC-CceEEc
Q psy5205 50 GARRVRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN-EGVVVL 113 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~-p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~-~~v~vi 113 (113)
+++.++.+|..|++.+ |||+||||+|.++++. +...+....+++++|+..|+..... .+++||
T Consensus 42 ~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI 106 (132)
T PF00004_consen 42 SEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVI 106 (132)
T ss_dssp HHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEE
T ss_pred cccccccccccccccccceeeeeccchhccccc-ccccccccccccceeeecccccccccccceeE
Confidence 7899999999999998 9999999999999988 4444667889999999999998765 445553
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.88 E-value=1.7e-08 Score=73.26 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=65.6
Q ss_pred cccccHHHHHHHHHHHHHhcChhhHhhcCCCC---Cceeec---------------------------------------
Q psy5205 12 DVRGVDEAKQELKEIVEFLKNPEKFSTLGGKL---PKGVLL--------------------------------------- 49 (113)
Q Consensus 12 di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~---~~giLl--------------------------------------- 49 (113)
+++|++++|++|++++.++..++.+.+.|.++ +.++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888765 236777
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
++.+++++|+.| .+++|||||+|.+.+.+.. +.....+.+.|++.|+.-
T Consensus 103 ~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ 157 (284)
T ss_pred HhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC
Confidence 223445566655 4589999999999765432 234567889999999853
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.69 E-value=1.2e-07 Score=67.96 Aligned_cols=88 Identities=28% Similarity=0.427 Sum_probs=61.5
Q ss_pred CCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCc---eeec-------------------------------------
Q psy5205 10 FKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPK---GVLL------------------------------------- 49 (113)
Q Consensus 10 ~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~---giLl------------------------------------- 49 (113)
+++++|++.+|+++++++.+........+.|..++. .++|
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 578999999999999998885444555556654433 2344
Q ss_pred --------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 50 --------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 --------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
++++++++|+.| .++||||||+|.+.. +.. +...+..++.|+..|+..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~--~~~--~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLAR--GGE--KDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred hhhhhccchHHHHHHHHHhc---cCCEEEEechhhhcc--CCc--cchHHHHHHHHHHHHhcc
Confidence 245567777766 368999999999963 211 223457889999999875
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.3e-07 Score=68.72 Aligned_cols=55 Identities=38% Similarity=0.657 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
++.+++.+|..|+..+|+++|+||+|+++++|.. ......++++++++..||+++
T Consensus 61 ~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~ 115 (494)
T COG0464 61 SELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK 115 (494)
T ss_pred HHHHHHHHHHHHHHhCCCeEeechhhhcccCccc-cccchhhHHHHHHHHhccccc
Confidence 6889999999999999999999999999999988 445678899999999999998
No 44
>KOG0743|consensus
Probab=98.38 E-value=2.2e-06 Score=65.43 Aligned_cols=103 Identities=21% Similarity=0.349 Sum_probs=77.2
Q ss_pred CCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec----------------------------h----HHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL----------------------------G----ARRV 54 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl----------------------------~----e~~l 54 (113)
-+|+.++...+.|++|.+-+.. ++..+.|++.|..+.||.|| + -.-+
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dL 277 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDL 277 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHH
Confidence 7899999999999999775555 99999999999999999999 0 1117
Q ss_pred HHHHHHHHhCCCeEEEEccccccccccCCCCCC----c--hhHHHHHHHHHHhcCCC---CCCceEE
Q psy5205 55 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH----P--YANQTINQLLAEMDGFH---QNEGVVV 112 (113)
Q Consensus 55 ~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~----~--~~~~i~~~lL~~ld~~~---~~~~v~v 112 (113)
+++.-.+ ...+||+|++||+-+..|+..... + ..+-.++-||+.+||+- ++.+|+|
T Consensus 278 r~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 278 RHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred HHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 7766443 456999999999988755433211 1 22346788999999983 3456665
No 45
>KOG0742|consensus
Probab=98.33 E-value=2.6e-06 Score=64.99 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=73.8
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHhcC----hhhHhhc--CCCCCceeec---------------------------hH
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEFLKN----PEKFSTL--GGKLPKGVLL---------------------------GA 51 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~~~~----~~~~~~~--g~~~~~giLl---------------------------~e 51 (113)
++.-.+++|+....++++|+++...-.| ...|++. -.+|+.|-.+ +-
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH
Confidence 3445689999999999999997765333 3344442 2456666555 45
Q ss_pred HHHHHHHHHHHhC-CCeEEEEccccccccccCCCCCCchhHHHHHHHHHH
Q psy5205 52 RRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 100 (113)
Q Consensus 52 ~~l~~~F~~A~~~-~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ 100 (113)
-+|+++|+.|.+. ..-+|||||+|++...|+.+..++..+..+|+||--
T Consensus 429 TkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR 478 (630)
T KOG0742|consen 429 TKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 478 (630)
T ss_pred HHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH
Confidence 6799999999865 467899999999999999888888889999999854
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.86 E-value=5e-05 Score=61.70 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~ 83 (113)
.+++++++|++|+++.|+||||||+|.+++.++.
T Consensus 259 ~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~ 292 (731)
T TIGR02639 259 FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT 292 (731)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC
Confidence 4579999999998888999999999999987654
No 47
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.73 E-value=0.00011 Score=60.50 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS 84 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~ 84 (113)
.|++++.+|+++++..|+||||||++.+++.++..
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~ 290 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE 290 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC
Confidence 47799999999988899999999999999876543
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00047 Score=56.39 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~ 83 (113)
.+++++.+|+.+++..|+||||||+|.+++.++.
T Consensus 263 ~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~ 296 (758)
T PRK11034 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA 296 (758)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC
Confidence 4678999999998889999999999999987754
No 49
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0013 Score=50.10 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC
Q psy5205 52 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 52 ~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~ 107 (113)
..+|++++.+.. ....|+||||+|.+.. ...|.||..|+.-..+
T Consensus 100 ~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------~aanaLLk~LEep~~~ 147 (394)
T PRK07940 100 DEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------RAANALLKAVEEPPPR 147 (394)
T ss_pred HHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------HHHHHHHHHhhcCCCC
Confidence 457888888853 2345999999999932 3458899999875443
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.36 E-value=0.00074 Score=55.35 Aligned_cols=43 Identities=30% Similarity=0.514 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
..+.+.|..|....| |+||||+|.+.++..+ + ..++||+.||.
T Consensus 402 g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~-----~~~aLl~~ld~ 444 (775)
T TIGR00763 402 GRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D-----PASALLEVLDP 444 (775)
T ss_pred chHHHHHHHhCcCCC-EEEEechhhcCCccCC---C-----HHHHHHHhcCH
Confidence 456677888866666 7899999999854321 1 34678887774
No 51
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.32 E-value=0.0016 Score=49.89 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=29.4
Q ss_pred hCCCeEEEEccccccccccCCCCCC--chhHHHHHHHHHHhcCC
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGF 104 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~~~~~--~~~~~i~~~lL~~ld~~ 104 (113)
...++||||||+|.+..++.+.+.. .....+.+.||..|||-
T Consensus 171 ~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 171 KAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred HcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 4578999999999998875432211 11125889999999863
No 52
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.30 E-value=0.00073 Score=55.99 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHh-CCCeEEEEccccccccccCCCC
Q psy5205 50 GARRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSV 85 (113)
Q Consensus 50 ~e~~l~~~F~~A~~-~~p~ilfiDEiD~l~~~R~~~~ 85 (113)
.|+.++++|+.+.+ ..|+||||||++.+++.+++.+
T Consensus 255 ~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~ 291 (857)
T PRK10865 255 FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG 291 (857)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc
Confidence 46689999998644 6799999999999998775443
No 53
>KOG0735|consensus
Probab=97.24 E-value=0.00063 Score=55.20 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCC-CCCCchhHHHHHHHHHHhcC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN-SVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~-~~~~~~~~~i~~~lL~~ld~ 103 (113)
..+-++.+|.+|..++|+|+++|++|+|++.-+. ++..+.....++.||+++-.
T Consensus 479 iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~ 533 (952)
T KOG0735|consen 479 IQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIK 533 (952)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999984332 22234555667778866543
No 54
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.98 E-value=0.002 Score=53.40 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHh-CCCeEEEEccccccccccCCC
Q psy5205 50 GARRVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNS 84 (113)
Q Consensus 50 ~e~~l~~~F~~A~~-~~p~ilfiDEiD~l~~~R~~~ 84 (113)
.++.++++|+++++ ..++||||||++.+.+.+++.
T Consensus 264 ~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~ 299 (852)
T TIGR03345 264 FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA 299 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc
Confidence 46899999999965 469999999999999887643
No 55
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.95 E-value=0.0043 Score=47.61 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=29.4
Q ss_pred hCCCeEEEEccccccccccCCCCCCch--hHHHHHHHHHHhcCC
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTINQLLAEMDGF 104 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~~~~~~~--~~~i~~~lL~~ld~~ 104 (113)
...|+||||||+|.+..++++..-... ...+.+.||+.|||.
T Consensus 179 ~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~ 222 (413)
T TIGR00382 179 KAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGT 222 (413)
T ss_pred hcccceEEecccchhchhhccccccccccchhHHHHHHHHhhcc
Confidence 456889999999999986643321111 125888999999875
No 56
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.72 E-value=0.0029 Score=52.44 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEccccccccccCC
Q psy5205 50 GARRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~-~p~ilfiDEiD~l~~~R~~ 83 (113)
.++.++.+|+.+.+. .|+||||||++.+++.+++
T Consensus 250 ~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~ 284 (852)
T TIGR03346 250 FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA 284 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC
Confidence 356899999998654 6999999999999876543
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=96.38 E-value=0.028 Score=43.79 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=49.4
Q ss_pred CCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec--------------------------------hHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------GARRVR 55 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------~e~~l~ 55 (113)
.++++++|.+.++++|+.++....+. .+++.+|+ +...++
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~ 82 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIE 82 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHH
Confidence 46899999999999999988663321 12334444 123344
Q ss_pred HHHHHHHh------CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 56 DLFKAAKD------RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 56 ~~F~~A~~------~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
.+...+.. ..+.+|+|||+|.+.++. ....+++|+..++
T Consensus 83 ~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~ 127 (482)
T PRK04195 83 RVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIK 127 (482)
T ss_pred HHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHH
Confidence 44444432 257899999999986521 1234566666666
No 58
>KOG0736|consensus
Probab=95.75 E-value=0.036 Score=45.73 Aligned_cols=61 Identities=21% Similarity=0.447 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC-CCCceEE
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEGVVV 112 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~-~~~~v~v 112 (113)
+|.++...|.+|+...|||||+-.+|.++.++.++. +-.....+++++. +|-+. +...++|
T Consensus 475 ~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge-d~rl~~~i~~~ls-~e~~~~~~~~~iv 536 (953)
T KOG0736|consen 475 TETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE-DARLLKVIRHLLS-NEDFKFSCPPVIV 536 (953)
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch-hHHHHHHHHHHHh-cccccCCCCceEE
Confidence 789999999999999999999999999997766533 2222344444444 33333 4445554
No 59
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.54 E-value=0.0096 Score=45.93 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=28.4
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
.-.|+||||+|.|+.+.++++.+-....+-..||..|+|-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~ 288 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGS 288 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccc
Confidence 5689999999999987543222222235778899999884
No 60
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.054 Score=42.67 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.8
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
-+|+||+|.+.+++.|...+..
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~ 34 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ 34 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh
Confidence 5799999999999999998866
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.016 Score=44.28 Aligned_cols=68 Identities=21% Similarity=0.369 Sum_probs=44.9
Q ss_pred CCCCcccccHHHHH---HHHHHHHH-hcChhhHhhcCCCCCceeec---------------------hHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQ---ELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------------------GARRVRDLFKAAK 62 (113)
Q Consensus 8 ~~~~di~G~~~~k~---~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------------------~e~~l~~~F~~A~ 62 (113)
-++++++|.+.+.. -|++++.. --+...+ || +|+.|-.- +-+.++++|+.|+
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl--~G-PPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~ 97 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMIL--WG-PPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEAR 97 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEE--EC-CCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHH
Confidence 57889999988774 45556554 2222222 22 44444221 6788999999997
Q ss_pred hCC----CeEEEEccccccc
Q psy5205 63 DRT----PCVVFIDEIDSVG 78 (113)
Q Consensus 63 ~~~----p~ilfiDEiD~l~ 78 (113)
+.. ..|||+|||.-+-
T Consensus 98 ~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred HHHhcCCceEEEEehhhhcC
Confidence 553 5999999998763
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.23 E-value=0.045 Score=40.40 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.5
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++++|.++.++.+...+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~ 43 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEA 43 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHH
Confidence 4899999999999999988765
No 63
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.054 Score=44.24 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC
Q psy5205 52 RRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 52 ~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~ 107 (113)
..++++.+.+.. ....|++|||+|.+- ....|.||..|+...++
T Consensus 102 d~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 102 DNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEH 149 (709)
T ss_pred HHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHHhCCCC
Confidence 457777776531 234699999998762 24678899999875443
No 64
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.06 E-value=0.12 Score=38.18 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHH
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
...+|++++|.+.+++.|.+.+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~ 32 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN 32 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc
Confidence 357899999999999999987755
No 65
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.99 E-value=0.013 Score=45.13 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=28.2
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
.-.|+||||+|.++.+.++.+.+-....+-+.||..|+|-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt 286 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGS 286 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCc
Confidence 5789999999999976633222222234778899999884
No 66
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.084 Score=42.19 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.8
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|+||+|.+.+++.|...+..
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~ 34 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT 34 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc
Confidence 6899999999999999998765
No 67
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.91 E-value=0.093 Score=43.44 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+.+.+..+....| |+||||+|.+..+..+ ...+.|+..||.
T Consensus 406 ~~~~l~~~~~~~~-villDEidk~~~~~~g--------~~~~aLlevld~ 446 (784)
T PRK10787 406 LIQKMAKVGVKNP-LFLLDEIDKMSSDMRG--------DPASALLEVLDP 446 (784)
T ss_pred HHHHHHhcCCCCC-EEEEEChhhcccccCC--------CHHHHHHHHhcc
Confidence 3344455543444 7899999999764321 134678887773
No 68
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.85 E-value=0.095 Score=41.46 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=19.6
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|...+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~ 34 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ 34 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc
Confidence 5899999999999999988765
No 69
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.68 E-value=0.03 Score=37.89 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=26.9
Q ss_pred EEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 68 VVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 68 ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
|||+||||...++ .+.+.+.....+.+.||+.||+-
T Consensus 71 VVllDEidKa~~~-~~~~~~v~~~~V~~~LL~~le~g 106 (171)
T PF07724_consen 71 VVLLDEIDKAHPS-NSGGADVSGEGVQNSLLQLLEGG 106 (171)
T ss_dssp EEEEETGGGCSHT-TTTCSHHHHHHHHHHHHHHHHHS
T ss_pred hhhhHHHhhcccc-ccccchhhHHHHHHHHHHHhccc
Confidence 9999999999987 32222334458889999999863
No 70
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.025 Score=42.72 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------hHHHHHHHHHHHHhCCCeEEEEccccccccccCC
Q psy5205 14 RGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 14 ~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~ 83 (113)
.|++..-..+.+.+.- ......-+++.++-.+.+|. .+..-++..+.|.+ -.|+||||||.++.+-+.
T Consensus 191 pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~--~GIvFIDEIDKIa~~~~~ 268 (444)
T COG1220 191 PGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQ--NGIVFIDEIDKIAKRGGS 268 (444)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh--cCeEEEehhhHHHhcCCC
Confidence 4566666666666555 33222222222222233333 33334444444433 469999999999976653
Q ss_pred CCCCchhH-HHHHHHHHHhcC
Q psy5205 84 SVLHPYAN-QTINQLLAEMDG 103 (113)
Q Consensus 84 ~~~~~~~~-~i~~~lL~~ld~ 103 (113)
++. ..++ .+-.-||-.++|
T Consensus 269 g~~-dvSREGVQRDlLPlvEG 288 (444)
T COG1220 269 GGP-DVSREGVQRDLLPLVEG 288 (444)
T ss_pred CCC-CcchhhhcccccccccC
Confidence 331 2222 333445555555
No 71
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.15 Score=42.23 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~ 83 (113)
-|++++.+.++.++..+.||||||++.+.+.-+.
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~ 280 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT 280 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc
Confidence 5899999999999888999999999999886554
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.16 Score=37.95 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=51.6
Q ss_pred CCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCcee---------------------------e-c------hHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGV---------------------------L-L------GAR 52 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~gi---------------------------L-l------~e~ 52 (113)
..+|++++|.+.+++.+...+..=+-+..|-=+| +++.|. . + +..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G-~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCG-PRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEEC-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 4689999999999999988876511111111011 111110 0 0 235
Q ss_pred HHHHHHHHHHhC----CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 53 RVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 53 ~l~~~F~~A~~~----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
.++++++.+... .+.|++|||+|.+.. ...+.|+..|+..
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~ 135 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP 135 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC
Confidence 777888777432 356999999987732 3467788877764
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.56 E-value=0.15 Score=40.05 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.3
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|+|++|.+.+.+.|...+..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~ 36 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS 36 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc
Confidence 5799999999999999887765
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.53 E-value=0.11 Score=43.04 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=53.4
Q ss_pred CCCCcccccHHHHHHHHHHHHH--hcChhhHh----------------hcCCC-----CCce----------------ee
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF--LKNPEKFS----------------TLGGK-----LPKG----------------VL 48 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~--~~~~~~~~----------------~~g~~-----~~~g----------------iL 48 (113)
-+|++|+|.+.+++.|+..+.. +.|.-+|. .+.-. .+.| +-
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 5799999999999999988765 33331111 01000 0111 11
Q ss_pred c------hHHHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC
Q psy5205 49 L------GARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 49 l------~e~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~ 107 (113)
+ +-..++++.+.+.. ....|+||||+|.|- ....|.||..|+.-..+
T Consensus 93 IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 93 MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLKTLEEPPPH 149 (830)
T ss_pred ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHHHHHhcCCC
Confidence 1 22346667766532 235799999999883 23578899998865443
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.50 E-value=0.15 Score=41.61 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH----hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC
Q psy5205 52 RRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 52 ~~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~ 107 (113)
..++++.+.+. .....|++|||+|.+- ....|.||..|+.-..+
T Consensus 107 DdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~AaNALLKTLEEPP~~ 154 (700)
T PRK12323 107 DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAFNAMLKTLEEPPEH 154 (700)
T ss_pred HHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHHHHHHHhhccCCCC
Confidence 44666666553 2335799999999882 24678999999875433
No 76
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.41 E-value=0.16 Score=40.43 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.1
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++|+|.+.+.+.|+..+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~ 34 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ 34 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc
Confidence 35899999999999999998765
No 77
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.35 E-value=0.13 Score=36.62 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=44.5
Q ss_pred CCCCcccccHHHHHHHHHHHHH-hcChhhHhh--cCCCCCceeec----------------------hHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKFST--LGGKLPKGVLL----------------------GARRVRDLFKAAK 62 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~--~g~~~~~giLl----------------------~e~~l~~~F~~A~ 62 (113)
-+|+|++|.+++++.+.-++.. ....+.+.. +-.+|+-|-.- ....+..++...
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l- 99 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL- 99 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc-
Confidence 4899999999999999888776 332222221 11244444221 123344444333
Q ss_pred hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
....|||||||..+- +..--.|+..|+..
T Consensus 100 -~~~~ILFIDEIHRln------------k~~qe~LlpamEd~ 128 (233)
T PF05496_consen 100 -KEGDILFIDEIHRLN------------KAQQEILLPAMEDG 128 (233)
T ss_dssp --TT-EEEECTCCC--------------HHHHHHHHHHHHCS
T ss_pred -CCCcEEEEechhhcc------------HHHHHHHHHHhccC
Confidence 346799999997762 34555677777753
No 78
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.32 E-value=0.19 Score=37.82 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.6
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|...+..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~ 34 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL 34 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc
Confidence 6899999999999999887765
No 79
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.22 E-value=0.12 Score=39.42 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=42.7
Q ss_pred CCCCcccccHHHHHH---HHHHHHHhcChhhHhhcCCCCCceeec---------------------hHHHHHHHHHHHHh
Q psy5205 8 ITFKDVRGVDEAKQE---LKEIVEFLKNPEKFSTLGGKLPKGVLL---------------------GARRVRDLFKAAKD 63 (113)
Q Consensus 8 ~~~~di~G~~~~k~~---l~~~i~~~~~~~~~~~~g~~~~~giLl---------------------~e~~l~~~F~~A~~ 63 (113)
-+++|++|.+.+... |++++..-+.+..+- +| +|+.|--. +.+.++++++.+..
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL-~G-ppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~ 86 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMIL-WG-PPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQ 86 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEE-EC-CCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHH
Confidence 568999999998665 777665411111111 12 33333211 45667888888753
Q ss_pred ----CCCeEEEEccccccc
Q psy5205 64 ----RTPCVVFIDEIDSVG 78 (113)
Q Consensus 64 ----~~p~ilfiDEiD~l~ 78 (113)
....+|||||+|.+.
T Consensus 87 ~~~~g~~~vL~IDEi~~l~ 105 (413)
T PRK13342 87 RRSAGRRTILFIDEIHRFN 105 (413)
T ss_pred hhhcCCceEEEEechhhhC
Confidence 257899999999873
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.94 E-value=0.056 Score=39.19 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.9
Q ss_pred CCCcccccHHHHHHHHHHHHH
Q psy5205 9 TFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 9 ~~~di~G~~~~k~~l~~~i~~ 29 (113)
+|++++|.++++++|..++..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~ 22 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEA 22 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHH
Confidence 789999999999999988765
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.84 E-value=0.086 Score=32.40 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R 81 (113)
....++.+++.|+...|.++|+||++.+....
T Consensus 63 ~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 63 GELRLRLALALARKLKPDVLILDEITSLLDAE 94 (148)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 56778899999988889999999999987543
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.83 E-value=0.19 Score=39.33 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.3
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+.+++.|+..+..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~ 32 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK 32 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc
Confidence 45899999999999998887654
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.25 Score=39.91 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.8
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
-+|++|+|.+.+.+.|...+..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~ 34 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ 34 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc
Confidence 5899999999999999998766
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=0.27 Score=38.74 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhC----CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC
Q psy5205 52 RRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 52 ~~l~~~F~~A~~~----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~ 107 (113)
..+|++.+.+... ..-|++|||+|.+. ....|.||.-|+....+
T Consensus 99 ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 99 DDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLKTLEEPAPH 146 (491)
T ss_pred HHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHHHHhCCCCC
Confidence 4577777776422 34589999998773 24678899999876544
No 85
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.53 E-value=0.23 Score=33.80 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhCC-CeEEEEccccccc-cccCCCCCCchhHHHHHHHHHHhcCCCCCCce
Q psy5205 50 GARRVRDLFKAAKDRT-PCVVFIDEIDSVG-AKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~-p~ilfiDEiD~l~-~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v 110 (113)
....+..+++...+.. ..||+|||+|.+. ..+ .....+..|.+.++......++
T Consensus 102 ~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 102 SFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp -G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHHHHHHHHHhhccccCCc
Confidence 4567788888776654 4999999999998 322 1245677777777765444444
No 86
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.22 Score=40.74 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.6
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|...+..
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~ 33 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER 33 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc
Confidence 6899999999999999988765
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.33 E-value=0.23 Score=40.31 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.7
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|...+..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~ 34 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL 34 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc
Confidence 6899999999999999988765
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.32 E-value=0.3 Score=38.51 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.1
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|+||+|.+.+++.|+..+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~ 32 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ 32 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc
Confidence 35899999999999999988766
No 89
>KOG0989|consensus
Probab=93.29 E-value=0.27 Score=36.69 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+++++.|.+.+.+.|...+..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~ 54 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR 54 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh
Confidence 35789999999999999988766
No 90
>KOG2004|consensus
Probab=93.26 E-value=0.2 Score=41.30 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=17.8
Q ss_pred CcccccHHHHHHHHHHHHH--hcCh
Q psy5205 11 KDVRGVDEAKQELKEIVEF--LKNP 33 (113)
Q Consensus 11 ~di~G~~~~k~~l~~~i~~--~~~~ 33 (113)
+|=.||+++|+++-+.+.- ++..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs 435 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS 435 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc
Confidence 4667999999999997766 5443
No 91
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.26 Score=41.50 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.7
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|+..+..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~ 34 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ 34 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh
Confidence 6899999999999999987765
No 92
>PLN03025 replication factor C subunit; Provisional
Probab=93.17 E-value=0.41 Score=35.22 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=19.4
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+++++.|.+++.+.|+.++..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~ 31 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD 31 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc
Confidence 35789999999999999887655
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.14 E-value=0.26 Score=41.09 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.8
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|+..+..
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~ 33 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS 33 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh
Confidence 5899999999999999998766
No 94
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.80 E-value=0.1 Score=40.42 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=54.3
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhHhhcC-CCCCceeec----------------------------------------
Q psy5205 12 DVRGVDEAKQELKEIVEF-LKNPEKFSTLG-GKLPKGVLL---------------------------------------- 49 (113)
Q Consensus 12 di~G~~~~k~~l~~~i~~-~~~~~~~~~~g-~~~~~giLl---------------------------------------- 49 (113)
-|+|.++.|+.+..++.. .+......... -.+|+++||
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 488999999988776553 32222111111 224578887
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHH
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 100 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ 100 (113)
.++.++.+|+.|... +| .|.+++.|.... ....+|++++||..
T Consensus 93 vE~i~r~l~e~A~~~------i~-~d~i~~~r~~a~-~~ae~riv~~Ll~~ 135 (441)
T TIGR00390 93 VESMVRDLTDAAVKL------VK-EEAIEKVRDRAE-ELAEERIVDVLLPP 135 (441)
T ss_pred HHHHHHHHHHHHHHH------HH-HHHHhHHHHHHH-HHHHHHHHHHhcCC
Confidence 578899999999663 34 699999995444 55778999998853
No 95
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.63 E-value=0.36 Score=36.17 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=23.9
Q ss_pred CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 64 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
..+.||+|||+|.+.. +.+ ...+.+|+..++...+
T Consensus 137 ~~~~viviDE~d~l~~-~~~-------~~~l~~l~~~~~~~~~ 171 (394)
T PRK00411 137 DRVLIVALDDINYLFE-KEG-------NDVLYSLLRAHEEYPG 171 (394)
T ss_pred CCEEEEEECCHhHhhc-cCC-------chHHHHHHHhhhccCC
Confidence 3578999999999982 211 2367777777766543
No 96
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=0.53 Score=37.55 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.4
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++++|.+.+++.|...+..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~ 34 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET 34 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc
Confidence 6899999999999999887765
No 97
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=0.6 Score=37.21 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.7
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|+..+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~ 32 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN 32 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc
Confidence 6899999999999999988765
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=0.55 Score=38.06 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++|+|.+.+++.|...+..
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~ 34 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE 34 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc
Confidence 35899999999999999988755
No 99
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.69 E-value=0.98 Score=35.85 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL 49 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl 49 (113)
.-+|+|+.|.+.+.+.|..++..=+-...|- .+-|||+.-
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYl---fsG~RGvGK 51 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYL---FSGPRGVGK 51 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhh---hcCCCCcCc
Confidence 3579999999999999999887733344443 234566544
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.65 E-value=0.64 Score=36.79 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhC----CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 50 GARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
+-..++++.+.|... ..-|++|||+|.+. ....|.||.-|+..
T Consensus 109 ~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naLLk~LEep 155 (507)
T PRK06645 109 SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNALLKTLEEP 155 (507)
T ss_pred CHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHHHHHHhhc
Confidence 345678888777432 34599999998873 24578888888854
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.65 E-value=0.6 Score=38.49 Aligned_cols=85 Identities=27% Similarity=0.450 Sum_probs=53.5
Q ss_pred CCCCCcccccHHHHHHHHHHHHH--hcChhhHhhcCCCCCcee------------------------------------e
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF--LKNPEKFSTLGGKLPKGV------------------------------------L 48 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~--~~~~~~~~~~g~~~~~gi------------------------------------L 48 (113)
..+|++|+|.+.+++.|+..+.. +.|.=++. | +++.|. +
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~--G-P~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFS--G-PRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII 90 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEE--C-CCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE
Confidence 46899999999999999998765 33321110 0 111110 1
Q ss_pred -c------hHHHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 49 -L------GARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 49 -l------~e~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
+ +-..+|++.+.+.. ....|++|||+|.+-. ...|.||..|+....
T Consensus 91 eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEEPP~ 147 (725)
T PRK07133 91 EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEEPPK 147 (725)
T ss_pred EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhcCCC
Confidence 0 23447777776643 2346999999988732 367889999887543
No 102
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.49 E-value=0.81 Score=37.07 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC
Q psy5205 50 GARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 50 ~e~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
+-..+|++.+.+.. ...-|++|||+|.+- ....|.||.-|+.-.
T Consensus 102 ~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LEePp 149 (620)
T PRK14948 102 GVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKTLEEPP 149 (620)
T ss_pred CHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHHHhcCC
Confidence 34578888877742 234699999999882 246688999998643
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.47 E-value=0.66 Score=38.43 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=24.2
Q ss_pred HHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 61 AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 61 A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
.+++..||+||||+|.+- ..+.+.||+.||.
T Consensus 553 v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~ 583 (758)
T PRK11034 553 VIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDN 583 (758)
T ss_pred HHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhc
Confidence 345566999999999983 3478899999984
No 104
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.12 E-value=1 Score=37.10 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=26.0
Q ss_pred HHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 57 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 57 ~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+....+.+..+|+||||+|.+- ..+.|.||+.||.
T Consensus 545 l~~~~~~~p~~VvllDEieka~------------~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 545 LTEAVRKHPHCVLLLDEIEKAH------------PDIYNILLQVMDY 579 (731)
T ss_pred HHHHHHhCCCeEEEEechhhcC------------HHHHHHHHHhhcc
Confidence 3344456677899999999762 3578889998886
No 105
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.55 E-value=1.2 Score=34.62 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.8
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|+||+|.+.+++.|...+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~ 35 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF 35 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc
Confidence 6899999999999999988765
No 106
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.29 E-value=1.1 Score=36.04 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.7
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++|+|.+.+++.|...+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~ 34 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE 34 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh
Confidence 35899999999999999887765
No 107
>KOG0745|consensus
Probab=90.12 E-value=0.54 Score=36.85 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHH----hCCCeEEEEccccccccccCCCCCC--chhHHHHHHHHHHhcCC
Q psy5205 50 GARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 ~e~~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~--~~~~~i~~~lL~~ld~~ 104 (113)
-|.-|.++...|. +.+.-|+|+||+|.|..+-.+-+.. -...-+-..||..++|-
T Consensus 272 VEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 272 VESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred HHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhccc
Confidence 4677888887774 4567899999999998544322211 11135667889888874
No 108
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.05 E-value=1.8 Score=31.77 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|.|.+.+++.|...+..
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~ 22 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK 22 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc
Confidence 4799999999999999888755
No 109
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.02 E-value=1.1 Score=33.22 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEccccccc
Q psy5205 51 ARRVRDLFKAAKD-RTPCVVFIDEIDSVG 78 (113)
Q Consensus 51 e~~l~~~F~~A~~-~~p~ilfiDEiD~l~ 78 (113)
++.++.+++.... ..|.||+|||+|.+.
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhhc
Confidence 3445666666543 458899999999997
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.98 E-value=1 Score=36.39 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.5
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+.+++.|...+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~ 34 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN 34 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc
Confidence 35899999999999999887754
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.95 E-value=1 Score=36.05 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.0
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++|+|.+.+++.|+..+..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~ 34 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES 34 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc
Confidence 35899999999999999998765
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.92 E-value=1.5 Score=31.82 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=18.9
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+++++.|.+.+++.+...+..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~ 39 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK 39 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc
Confidence 5789999999999999888754
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.58 E-value=1.1 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=24.4
Q ss_pred HHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
...+++..+||+|||+|.. + ..+.+.|++.||.
T Consensus 662 ~~v~~~p~svvllDEieka---------~---~~v~~~Llq~ld~ 694 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEKA---------H---PDVLELFYQVFDK 694 (852)
T ss_pred HHHHhCCCcEEEEechhhc---------C---HHHHHHHHHHhhc
Confidence 4445677899999999854 2 3577888888875
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.56 E-value=1.1 Score=36.04 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.6
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
-+|++|+|.+.+++.|+..+..
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~ 31 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA 31 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc
Confidence 5799999999999999998766
No 115
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.03 E-value=1.9 Score=26.82 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
....+.+.+...+....+|+|||+|.+. + ...++.+...++
T Consensus 73 ~~l~~~~~~~l~~~~~~~lviDe~~~l~-~----------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 73 DELRSLLIDALDRRRVVLLVIDEADHLF-S----------DEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEETTHHHH-T----------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChHhcC-C----------HHHHHHHHHHHh
Confidence 3444455555555666799999999986 1 456777777666
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.59 E-value=2.6 Score=32.10 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=19.9
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++|+|.+.+++.|+..+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~ 34 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM 34 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh
Confidence 35899999999999999887765
No 117
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=88.44 E-value=1.6 Score=31.55 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=50.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec--------------------------------hHHH
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------GARR 53 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------~e~~ 53 (113)
..+.++++.|++.+|+.|.+-...+-. ..|...+|| .-..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 368999999999999999776544211 123344444 2234
Q ss_pred HHHHHHHHHh-CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 54 VRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 54 l~~~F~~A~~-~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
+.++++..+. ..+-|||+|++- +... ..--.+|-+.|||-
T Consensus 94 l~~l~~~l~~~~~kFIlf~DDLs--Fe~~---------d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 94 LPELLDLLRDRPYKFILFCDDLS--FEEG---------DTEYKALKSVLEGG 134 (249)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC--CCCC---------cHHHHHHHHHhcCc
Confidence 6677777653 358899999742 2111 12236778888884
No 118
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.11 E-value=1 Score=34.12 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHH----hCCCeEEEEccccccccccCCCCCC--chhHHHHHHHHHHhcCC
Q psy5205 51 ARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGF 104 (113)
Q Consensus 51 e~~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~--~~~~~i~~~lL~~ld~~ 104 (113)
|..+-++...|. +....|++|||+|.++.+-++.+-. -....+-.+||..|+|-
T Consensus 144 ENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 144 ENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred HHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 455666665552 3457899999999999766433211 11125777899999985
No 119
>KOG0741|consensus
Probab=87.96 E-value=2.2 Score=34.47 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~ 107 (113)
..++++|+.|++..-+|+++|+++.|..--.- +...+.-++.+|+..+..-...
T Consensus 585 ~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI--GPRfSN~vlQaL~VllK~~ppk 638 (744)
T KOG0741|consen 585 AHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI--GPRFSNLVLQALLVLLKKQPPK 638 (744)
T ss_pred HHHHHHHHHhhcCcceEEEEcchhhhhccccc--CchhhHHHHHHHHHHhccCCCC
Confidence 35899999999999999999999998642211 1234556777777777766544
No 120
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.95 E-value=0.82 Score=34.73 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=30.9
Q ss_pred cCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccccc
Q psy5205 39 LGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 39 ~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R 81 (113)
+|.....=.++.+..+.++++.+.+..|.+++||++..+....
T Consensus 132 lg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 132 LGISTENLYLLAETNLEDILASIEELKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred cCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhhccc
Confidence 3433333334466678888888888999999999999987543
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.09 E-value=2.7 Score=34.10 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++|+|.+.+++.|...+..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~ 35 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT 35 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc
Confidence 6899999999999999888765
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.06 E-value=2.5 Score=34.14 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhC----CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 52 RRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 52 ~~l~~~F~~A~~~----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
..||++.+.++.. ..-|++|||+|.+- ....|.||.-|+....+.
T Consensus 115 d~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKtLEePp~~~ 163 (598)
T PRK09111 115 DDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKTLEEPPPHV 163 (598)
T ss_pred HHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHHHHhCCCCe
Confidence 4577777776422 35699999998883 245788888888754443
No 123
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.81 E-value=3.7 Score=29.62 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.9
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|+|+.|.+++++.++..+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~ 35 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE 35 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC
Confidence 5889999999999999887754
No 124
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=2.1 Score=35.39 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+-+|=+-.++|....|.+ ++||||.++.+-.+.- -++||.-||.
T Consensus 404 PGrIiQ~mkka~~~NPv~-LLDEIDKm~ss~rGDP--------aSALLEVLDP 447 (782)
T COG0466 404 PGKIIQGMKKAGVKNPVF-LLDEIDKMGSSFRGDP--------ASALLEVLDP 447 (782)
T ss_pred ChHHHHHHHHhCCcCCeE-EeechhhccCCCCCCh--------HHHHHhhcCH
Confidence 344556677787777765 5999999986533221 2467777774
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.31 E-value=3.5 Score=32.47 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.9
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+.+.+.|+..+..
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~ 34 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL 34 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc
Confidence 45899999999999999888765
No 126
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.80 E-value=2.9 Score=35.90 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=26.4
Q ss_pred CCCCceeechHHHHHHHHHHHH--hCCCeEEEEccccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAK--DRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~--~~~p~ilfiDEiD~l~~~ 80 (113)
..|++|+ -+.+.+..+|.... ...++||+|||+|.|..+
T Consensus 844 ~~P~~Gl-sS~evLerLF~~L~k~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 844 KKPPNAL-NSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred CCCCccc-cHHHHHHHHHhhhhcccccceEEEeehHhhhCcc
Confidence 3344443 24567888887763 234679999999999753
No 127
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.30 E-value=1.2 Score=30.30 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.+..+.+.+.+..|.+++||-+.++..
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 366666666677899999999999864
No 128
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.52 E-value=3.5 Score=31.99 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCCeEEEEccccccccc
Q psy5205 64 RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~ 80 (113)
..|.+|+|||++.+.++
T Consensus 193 ~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGK 209 (440)
T ss_pred hcCCEEEEechhhhcCc
Confidence 36899999999998654
No 129
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.43 E-value=3.9 Score=25.08 Aligned_cols=19 Identities=53% Similarity=0.814 Sum_probs=15.2
Q ss_pred HHHHhCCCeEEEEcccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l 77 (113)
..+....+.++++||++.+
T Consensus 78 ~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred HhhccCCCeEEEEeChhhh
Confidence 3444567999999999987
No 130
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=84.19 E-value=0.67 Score=36.05 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=50.5
Q ss_pred CcccccHHHHHHHHHHHHH-hcChhhHhhcC-CCCCceeec---------------------------------------
Q psy5205 11 KDVRGVDEAKQELKEIVEF-LKNPEKFSTLG-GKLPKGVLL--------------------------------------- 49 (113)
Q Consensus 11 ~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g-~~~~~giLl--------------------------------------- 49 (113)
..|+|.+..|+.+..++.. .+......... -..|+++|+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3489999999999877643 32222111111 012466777
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHH
Q psy5205 50 -GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLA 99 (113)
Q Consensus 50 -~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~ 99 (113)
.+..++++|+.|....|+ |...+.|.... ....+|++.+|+.
T Consensus 95 d~e~~ir~L~~~A~~~~~~-------~~~~~~~~~a~-~~~e~ri~~~l~~ 137 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVRE-------EKREKVREKAE-EAAEERILDALLP 137 (443)
T ss_pred CHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 478899999999888886 56666665433 3455677777654
No 131
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.59 E-value=4.3 Score=27.23 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 50 GARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 50 ~e~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
+-..++++.+.+.. ....|++|||+|.+-. ...+.||.-|+....
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~~~ 125 (188)
T TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEPPP 125 (188)
T ss_pred CHHHHHHHHHHHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCCCC
Confidence 44677777777753 3467999999988832 346778888887443
No 132
>KOG0732|consensus
Probab=83.24 E-value=0.96 Score=38.76 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT 82 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~ 82 (113)
.+..|..+|.+||..+|||+||-.+|--...+.
T Consensus 638 ~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p 670 (1080)
T KOG0732|consen 638 LEEEIVHIFMEARKTTPSIVFIPNVDEWARVIP 670 (1080)
T ss_pred HHHHHHHHHHHHhccCCceeeccchhhhhhcCc
Confidence 467899999999999999999999998766554
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.98 E-value=5.6 Score=32.38 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=19.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++|+|.+.+++.|+..+..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~ 34 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM 34 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc
Confidence 35899999999999999987755
No 134
>KOG2170|consensus
Probab=82.72 E-value=14 Score=27.76 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
+.-+.+-..+++++.++.+|||+|.+
T Consensus 165 eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 165 ELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHhcCCceEEechhhhc
Confidence 33445556667889999999999997
No 135
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=82.56 E-value=0.82 Score=33.94 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.1
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.-.|++.+|.+.+|++++-.+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~A 44 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKA 44 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHH
Confidence 34789999999999999988877
No 136
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=82.48 E-value=3 Score=35.92 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+...++++|. ..||+|++||+=..+.
T Consensus 88 G~~~L~eLl~----~~P~LILiDEl~~Y~~ 113 (1035)
T PF04465_consen 88 GKDVLRELLG----GRPVLILIDELVAYAR 113 (1035)
T ss_pred CHHHHHHHhC----CCCEEEEeecHHHHHH
Confidence 5678899885 3699999999988886
No 137
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=81.93 E-value=3.3 Score=26.26 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCeEEEEccccccccccCC--CCCCchhHHHHHHHHHHhc
Q psy5205 55 RDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 55 ~~~F~~A~~~~p~ilfiDEiD~l~~~R~~--~~~~~~~~~i~~~lL~~ld 102 (113)
+..+..+....|.++++||+..+...... ++......+.+.+++..+.
T Consensus 75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 124 (165)
T cd01120 75 SKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR 124 (165)
T ss_pred HHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 44566677888999999999998754321 1223334455555555544
No 138
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=80.69 E-value=8.2 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+.-..+...-+..++-+|+|||+..++.
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 3344455666789999999999999764
No 139
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=80.66 E-value=2.2 Score=33.03 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
-+.+..++..| -.+.-+|+|||++.+..-|... .-.+..|++++.+|.+.+
T Consensus 226 Lk~L~~~lr~a-Gy~GLlI~lDE~e~l~kl~~~~----~R~~~ye~lr~lidd~~~ 276 (416)
T PF10923_consen 226 LKGLARFLRDA-GYKGLLILLDELENLYKLRNDQ----AREKNYEALRQLIDDIDQ 276 (416)
T ss_pred HHHHHHHHHHc-CCCceEEEEechHHHHhcCChH----HHHHHHHHHHHHHHHHhc
Confidence 34455555555 6778899999999998655432 134677888888887643
No 140
>KOG0990|consensus
Probab=80.42 E-value=5.8 Score=29.99 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=45.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHhcChhhHh--hcCCCCCceeec---------------------------hHHHHHH
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKFS--TLGGKLPKGVLL---------------------------GARRVRD 56 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~--~~g~~~~~giLl---------------------------~e~~l~~ 56 (113)
+.-+++|+++.+++...+.+....-+.|..|. --|.-.+.+++- .-+.=-.
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~ 115 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIH 115 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHH
Confidence 34466899999999999999977755554332 111111112222 1223335
Q ss_pred HHHHHHh-------CCCeEEEEccccccc
Q psy5205 57 LFKAAKD-------RTPCVVFIDEIDSVG 78 (113)
Q Consensus 57 ~F~~A~~-------~~p~ilfiDEiD~l~ 78 (113)
.|+.++. .++-.+++||+|+..
T Consensus 116 ~fast~~~~~fst~~~fKlvILDEADaMT 144 (360)
T KOG0990|consen 116 LFASTQQPTTYSTHAAFKLVILDEADAMT 144 (360)
T ss_pred HHHhhccceeccccCceeEEEecchhHhh
Confidence 6666653 378899999999985
No 141
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=79.60 E-value=2.9 Score=32.76 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhC--CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 53 RVRDLFKAAKDR--TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 53 ~l~~~F~~A~~~--~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
.+.++...|+++ .|+++||||++.-- ..++..++++.|+.
T Consensus 258 ~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~ 299 (459)
T PRK11331 258 IFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEH 299 (459)
T ss_pred hHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhccc
Confidence 344566677654 58999999997542 24566777777763
No 142
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=79.25 E-value=3.8 Score=30.60 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC-----CCCchhHHHHHHHHHHhcCCCCCCceE
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS-----VLHPYANQTINQLLAEMDGFHQNEGVV 111 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~-----~~~~~~~~i~~~lL~~ld~~~~~~~v~ 111 (113)
.+..+..+...++...+.+++||-+-++.++.+-. ...+...|.++++|..|.+.-+..++.
T Consensus 118 ~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~t 184 (321)
T TIGR02012 118 GEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTT 184 (321)
T ss_pred HHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCE
Confidence 45556666666667889999999999998743211 111233466777777777764444443
No 143
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.07 E-value=2 Score=35.50 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=38.7
Q ss_pred CCCCCcccccHHHHH---HHHHHHHHhcChhhHhhcCCCCCceeec---------------------hHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQ---ELKEIVEFLKNPEKFSTLGGKLPKGVLL---------------------GARRVRDLFKAAK 62 (113)
Q Consensus 7 ~~~~~di~G~~~~k~---~l~~~i~~~~~~~~~~~~g~~~~~giLl---------------------~e~~l~~~F~~A~ 62 (113)
.-++++++|.+.+.. .+++++..-+.+..+- + ++|+.|--. +.+.+++.++.+.
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL-~-GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~ 101 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLIL-Y-GPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAK 101 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEE-E-CCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHH
Confidence 357899999999875 4555544311111110 1 233333211 2344666666653
Q ss_pred h-----CCCeEEEEccccccc
Q psy5205 63 D-----RTPCVVFIDEIDSVG 78 (113)
Q Consensus 63 ~-----~~p~ilfiDEiD~l~ 78 (113)
. ....+|||||+|.+-
T Consensus 102 ~~l~~~~~~~IL~IDEIh~Ln 122 (725)
T PRK13341 102 ERLERHGKRTILFIDEVHRFN 122 (725)
T ss_pred HHhhhcCCceEEEEeChhhCC
Confidence 2 246799999999874
No 144
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=78.64 E-value=9.5 Score=28.31 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCCcccc-cHHHHHHHHHHHHH
Q psy5205 9 TFKDVRG-VDEAKQELKEIVEF 29 (113)
Q Consensus 9 ~~~di~G-~~~~k~~l~~~i~~ 29 (113)
.|++|.| .+.+++.|...+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~ 24 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK 24 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc
Confidence 5788888 88888888887754
No 145
>KOG2028|consensus
Probab=77.76 E-value=2.3 Score=32.97 Aligned_cols=30 Identities=33% Similarity=0.657 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHh-----CCCeEEEEcccccccc
Q psy5205 50 GARRVRDLFKAAKD-----RTPCVVFIDEIDSVGA 79 (113)
Q Consensus 50 ~e~~l~~~F~~A~~-----~~p~ilfiDEiD~l~~ 79 (113)
+-+-+|.+|+.|++ ....||||||+..+-.
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 45779999999974 3589999999987643
No 146
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=77.54 E-value=19 Score=25.93 Aligned_cols=79 Identities=30% Similarity=0.455 Sum_probs=48.1
Q ss_pred ccccHHHHHHHHHHHHH-hcChhhHhhcCC---CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCc
Q psy5205 13 VRGVDEAKQELKEIVEF-LKNPEKFSTLGG---KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP 88 (113)
Q Consensus 13 i~G~~~~k~~l~~~i~~-~~~~~~~~~~g~---~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~ 88 (113)
+-|..+ +.+.++++. ++...++.+..- +++.| |-+.+.-|---+.|-+..|.||++||-=+-. +.
T Consensus 114 ~~g~~~--~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~-LSGGQQQRLcIARalAv~PeVlLmDEPtSAL--------DP 182 (253)
T COG1117 114 LHGIKD--KELDEIVESSLKKAALWDEVKDRLHKSALG-LSGGQQQRLCIARALAVKPEVLLMDEPTSAL--------DP 182 (253)
T ss_pred hhccch--HHHHHHHHHHHHHhHhHHHhHHHhhCCccC-CChhHHHHHHHHHHHhcCCcEEEecCccccc--------Cc
Confidence 335555 677888887 777766655431 22222 2245555555667778899999999954332 33
Q ss_pred hhHHHHHHHHHHhc
Q psy5205 89 YANQTINQLLAEMD 102 (113)
Q Consensus 89 ~~~~i~~~lL~~ld 102 (113)
.+..-+.+|+.+|-
T Consensus 183 IsT~kIEeLi~eLk 196 (253)
T COG1117 183 ISTLKIEELITELK 196 (253)
T ss_pred hhHHHHHHHHHHHH
Confidence 33445567776665
No 147
>PF14516 AAA_35: AAA-like domain
Probab=77.53 E-value=2.6 Score=31.33 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred HHHHHHHHHH---HhCCCeEEEEcccccccc
Q psy5205 52 RRVRDLFKAA---KDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 52 ~~l~~~F~~A---~~~~p~ilfiDEiD~l~~ 79 (113)
......|+.. .-..|-||||||+|+++.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE 141 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhcc
Confidence 3445555432 235899999999999975
No 148
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=76.74 E-value=14 Score=25.44 Aligned_cols=13 Identities=8% Similarity=0.347 Sum_probs=10.9
Q ss_pred CCeEEEEcccccc
Q psy5205 65 TPCVVFIDEIDSV 77 (113)
Q Consensus 65 ~p~ilfiDEiD~l 77 (113)
.+.+++|||+|.+
T Consensus 90 ~~~~liiDdi~~l 102 (227)
T PRK08903 90 EAELYAVDDVERL 102 (227)
T ss_pred cCCEEEEeChhhc
Confidence 4678999999987
No 149
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=76.74 E-value=7 Score=32.80 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=45.3
Q ss_pred hhHhhcCCCCCceeec-----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC--C-C--chhHHHHHHHHHHhcC
Q psy5205 34 EKFSTLGGKLPKGVLL-----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--L-H--PYANQTINQLLAEMDG 103 (113)
Q Consensus 34 ~~~~~~g~~~~~giLl-----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~--~-~--~~~~~i~~~lL~~ld~ 103 (113)
+...++|+...+ +++ +|..+..+-...++..|.+|+||-+-++..+.+-.+ . . +.-.+.++++|..|..
T Consensus 103 ~~A~~lGvDl~~-llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~ 181 (790)
T PRK09519 103 DYAKKLGVDTDS-LLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181 (790)
T ss_pred HHHHHcCCChhH-eEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 345566665433 333 455444444445567899999999999987322111 1 1 1224566788887777
Q ss_pred CCCCCceEE
Q psy5205 104 FHQNEGVVV 112 (113)
Q Consensus 104 ~~~~~~v~v 112 (113)
+....++.+
T Consensus 182 ~l~~~nvtv 190 (790)
T PRK09519 182 ALNNSGTTA 190 (790)
T ss_pred HHHhCCCEE
Confidence 654444444
No 150
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=14 Score=28.98 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=38.4
Q ss_pred hhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccccccC
Q psy5205 37 STLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT 82 (113)
Q Consensus 37 ~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~ 82 (113)
.++|+....=.|+.|-+++.+.+.+.+..|.+++||-|-.+....-
T Consensus 140 ~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~ 185 (456)
T COG1066 140 DRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEI 185 (456)
T ss_pred HHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccc
Confidence 4566655555666999999999999999999999999999987663
No 151
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.46 E-value=8.7 Score=27.89 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeEEEEccc
Q psy5205 55 RDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 55 ~~~F~~A~~~~p~ilfiDEi 74 (113)
|..++.|-+..|.++|+||=
T Consensus 153 RvaLARAialdPell~~DEP 172 (263)
T COG1127 153 RVALARAIALDPELLFLDEP 172 (263)
T ss_pred HHHHHHHHhcCCCEEEecCC
Confidence 45667777889999999993
No 152
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=75.11 E-value=12 Score=27.90 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCCceeec-------h--------HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 42 KLPKGVLL-------G--------ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 42 ~~~~giLl-------~--------e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
..+.||++ + ...++++.+...+.-..+|+|||+......-++.......-..+..|...+.
T Consensus 134 ~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP 209 (303)
T PF13872_consen 134 RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP 209 (303)
T ss_pred CCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC
Confidence 45789988 1 2467888888777778899999999887653222112222345555555553
No 153
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=75.06 E-value=5.1 Score=30.01 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=44.7
Q ss_pred hhhHhhcCCCCCceeec-----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC-----CCCchhHHHHHHHHHHhc
Q psy5205 33 PEKFSTLGGKLPKGVLL-----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS-----VLHPYANQTINQLLAEMD 102 (113)
Q Consensus 33 ~~~~~~~g~~~~~giLl-----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~-----~~~~~~~~i~~~lL~~ld 102 (113)
+.....+|+...+ +++ .|..+..+-...+..+.+++++|=+.++.++-+-. ..-+...|+++++|..+.
T Consensus 95 ~~~a~~lGvdl~r-llv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt 173 (322)
T PF00154_consen 95 PEYAESLGVDLDR-LLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLT 173 (322)
T ss_dssp HHHHHHTT--GGG-EEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHH
T ss_pred hhHHHhcCccccc-eEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHH
Confidence 4455677776654 334 46565555555566677899999999998766411 112445688999999888
Q ss_pred CCCCCCc
Q psy5205 103 GFHQNEG 109 (113)
Q Consensus 103 ~~~~~~~ 109 (113)
..-...+
T Consensus 174 ~~l~~~~ 180 (322)
T PF00154_consen 174 PLLSKSN 180 (322)
T ss_dssp HHHHTTT
T ss_pred HHHHhhc
Confidence 7643333
No 154
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=75.04 E-value=2.3 Score=28.37 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHh-CCCeEEEEccccccccc
Q psy5205 50 GARRVRDLFKAAKD-RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 50 ~e~~l~~~F~~A~~-~~p~ilfiDEiD~l~~~ 80 (113)
.+..++++.+.+.+ ..|.+++||-+..+...
T Consensus 125 ~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 125 LDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp SHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred chHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 35667888888887 68999999999999876
No 155
>KOG1051|consensus
Probab=75.02 E-value=13 Score=31.66 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
...++.+..+...-||+||||||.- | -.+.|.|++.||.-
T Consensus 648 ~gg~LteavrrrP~sVVLfdeIEkA---------h---~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 648 EGGQLTEAVKRRPYSVVLFEEIEKA---------H---PDVLNILLQLLDRG 687 (898)
T ss_pred hHHHHHHHHhcCCceEEEEechhhc---------C---HHHHHHHHHHHhcC
Confidence 3456777777788899999999865 2 46888899988865
No 156
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=74.80 E-value=9.8 Score=26.05 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEE
Q psy5205 55 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVV 112 (113)
Q Consensus 55 ~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~v 112 (113)
.-+|+..+.....++++||+|+-.. ....+.+..+|.++. .+.+++|
T Consensus 148 al~lA~~~~~~~p~~ilDEvd~~LD--------~~~~~~l~~~l~~~~---~~~Q~ii 194 (220)
T PF02463_consen 148 ALLLALQRYKPSPFLILDEVDAALD--------EQNRKRLADLLKELS---KQSQFII 194 (220)
T ss_dssp HHHHHHHTCS--SEEEEESTTTTS---------HHHHHHHHHHHHHHT---TTSEEEE
T ss_pred ccccccccccccccccccccccccc--------ccccccccccccccc---ccccccc
Confidence 3344544444566889999998763 233444555555543 3345554
No 157
>KOG0058|consensus
Probab=74.07 E-value=11 Score=31.22 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=26.0
Q ss_pred Cceeec-hHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 44 PKGVLL-GARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 44 ~~giLl-~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.+|..| +.++=|=.-+.|--..|+||++||+=+-.
T Consensus 600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred CccccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 478888 55666666666666899999999986654
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=3.9 Score=34.19 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=26.1
Q ss_pred HHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+..|.+..|||+||||+.- ...+.|-||+-||.
T Consensus 587 EaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDd 619 (786)
T COG0542 587 EAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDD 619 (786)
T ss_pred HhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcC
Confidence 3445666899999999764 35799999999996
No 159
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.25 E-value=13 Score=26.15 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
+.+.-|...+.|-+..|.+++|||=-+- -.-.++.+.|.-|..+.
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSA-----------LDPElVgEVLkv~~~LA 199 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSA-----------LDPELVGEVLKVMQDLA 199 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCccc-----------CCHHHHHHHHHHHHHHH
Confidence 4455566677777889999999994222 23467888888777764
No 160
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=73.12 E-value=18 Score=25.84 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHH
Q psy5205 18 EAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQL 97 (113)
Q Consensus 18 ~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~l 97 (113)
+++.++.++...+.-.+...+--...++|. +-+=..+.|--+.|+|++|||-= ++-+=..++.+..|
T Consensus 109 ~~kari~~l~k~l~l~~~~~rRv~~~S~G~-----kqkV~iARAlvh~P~i~vlDEP~--------sGLDi~~~r~~~df 175 (245)
T COG4555 109 EIKARIAELSKRLQLLEYLDRRVGEFSTGM-----KQKVAIARALVHDPSILVLDEPT--------SGLDIRTRRKFHDF 175 (245)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhhhchhh-----HHHHHHHHHHhcCCCeEEEcCCC--------CCccHHHHHHHHHH
Confidence 346777776666444433322111222332 22334455667899999999931 11132344555666
Q ss_pred HHHhc
Q psy5205 98 LAEMD 102 (113)
Q Consensus 98 L~~ld 102 (113)
+.++.
T Consensus 176 i~q~k 180 (245)
T COG4555 176 IKQLK 180 (245)
T ss_pred HHHhh
Confidence 65554
No 161
>PRK04132 replication factor C small subunit; Provisional
Probab=72.73 E-value=12 Score=31.78 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCC------eEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 52 RRVRDLFKAAKDRTP------CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p------~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
..++++.+.+....| -|++|||+|.+- ....|.|+..|+...++.
T Consensus 611 d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt------------~~AQnALLk~lEep~~~~ 661 (846)
T PRK04132 611 NVIREKVKEFARTKPIGGASFKIIFLDEADALT------------QDAQQALRRTMEMFSSNV 661 (846)
T ss_pred HHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC------------HHHHHHHHHHhhCCCCCe
Confidence 457777666544333 599999999993 235688998888655443
No 162
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=72.70 E-value=14 Score=25.29 Aligned_cols=23 Identities=35% Similarity=0.752 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEccc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
++++++++.+....|.++++||.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp 114 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEI 114 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecc
Confidence 45777777776668999999995
No 163
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=72.61 E-value=10 Score=28.53 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 64 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
...-|++|||+|.+- ....|.||..|+....+.
T Consensus 140 g~~rVviIDeAd~l~------------~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 140 GNWRIVIIDPADDMN------------RNAANAILKTLEEPPARA 172 (351)
T ss_pred CCceEEEEEchhhcC------------HHHHHHHHHHHhcCCCCc
Confidence 456799999999882 245688999998754443
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=72.58 E-value=6 Score=33.11 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=26.2
Q ss_pred HHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 57 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 57 ~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+....+.+..+|++|||+|..- ..+.|.||+.||.
T Consensus 603 l~~~~~~~p~~VvllDeieka~------------~~v~~~Llq~le~ 637 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLLQILDD 637 (821)
T ss_pred HHHHHHhCCCeEEEECChhhCC------------HHHHHHHHHHhcc
Confidence 4455555556999999999762 3578889999885
No 165
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=71.56 E-value=18 Score=24.06 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhCC-C-eEEEEccccccc
Q psy5205 50 GARRVRDLFKAAKDRT-P-CVVFIDEIDSVG 78 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~-p-~ilfiDEiD~l~ 78 (113)
+++++=.++..+.... + .+++|||.|.-.
T Consensus 240 G~~~~l~l~~~l~~~~~~~~illiDEpE~~L 270 (303)
T PF13304_consen 240 GEKRLLSLLSLLLSAKKNGSILLIDEPENHL 270 (303)
T ss_dssp HHHHHHHHHHHHHTTTTT-SEEEEESSSTTS
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEecCCcCCC
Confidence 4555534444443333 3 999999998765
No 166
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=71.15 E-value=6.9 Score=27.71 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCeEEEEcccccccccc
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R 81 (113)
+..+-..+++..|.+++||.+-.+....
T Consensus 129 ~~~i~~~~~~~~~~~vvID~l~~l~~~~ 156 (271)
T cd01122 129 LEKVRYMAVSHGIQHIIIDNLSIMVSDE 156 (271)
T ss_pred HHHHHHHHhcCCceEEEECCHHHHhccC
Confidence 3444445556789999999999986543
No 167
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=70.72 E-value=13 Score=24.59 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 50 GARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 50 ~e~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
.-..++++.+.+.. ...-|++|||+|.+- ....|+||.-|+.-..+.
T Consensus 83 ~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEepp~~~ 133 (162)
T PF13177_consen 83 KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEPPENT 133 (162)
T ss_dssp SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTTE
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCCCCCE
Confidence 44667777766642 246699999999883 457899999999765443
No 168
>KOG0991|consensus
Probab=70.13 E-value=9.3 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=19.4
Q ss_pred CCCcccccHHHHHHHHHHHHHhcChh
Q psy5205 9 TFKDVRGVDEAKQELKEIVEFLKNPE 34 (113)
Q Consensus 9 ~~~di~G~~~~k~~l~~~i~~~~~~~ 34 (113)
.+.||+|.+++.+++.-+...=.-|.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~ 50 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPN 50 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCc
Confidence 46899999999999988766533343
No 169
>KOG1514|consensus
Probab=69.60 E-value=7.6 Score=32.21 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHH-hCCCeEEEEccccccccc
Q psy5205 50 GARRVRDLFKAAK-DRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 50 ~e~~l~~~F~~A~-~~~p~ilfiDEiD~l~~~ 80 (113)
+-..++.-|.... ...||||+|||.|.|+.+
T Consensus 492 al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr 523 (767)
T KOG1514|consen 492 ALEALNFRFTVPKPKRSTTVVLIDELDILVTR 523 (767)
T ss_pred HHHHHHHhhccCCCCCCCEEEEeccHHHHhcc
Confidence 3445666666333 346999999999999864
No 170
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=69.13 E-value=18 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+..+...+....|.++++||+-++..
T Consensus 84 ~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 84 IQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 45566666778999999999988864
No 171
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=68.36 E-value=11 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.9
Q ss_pred CCeEEEEccccccccccCC
Q psy5205 65 TPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~ 83 (113)
..++++|||+..++++|..
T Consensus 79 ~~~liviDEa~~~~~~r~~ 97 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSW 97 (193)
T ss_dssp TT-EEEETTGGGTSB---T
T ss_pred CCcEEEEECChhhcCCCcc
Confidence 6799999999999999876
No 172
>PRK11823 DNA repair protein RadA; Provisional
Probab=68.35 E-value=4.5 Score=31.44 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~ 80 (113)
.+..+.++++.+++..|.+++||++-.+...
T Consensus 141 ~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 141 AETNLEAILATIEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEechhhhccc
Confidence 5556778888888889999999999998754
No 173
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=68.26 E-value=9.1 Score=29.01 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=19.7
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..++++|+|.+.+++.|.+.+..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~ 37 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS 37 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc
Confidence 35789999999999999988765
No 174
>KOG0056|consensus
Probab=67.91 E-value=44 Score=27.26 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=30.3
Q ss_pred hcChhhHhhcCCCCCceeec-hHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 30 LKNPEKFSTLGGKLPKGVLL-GARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 30 ~~~~~~~~~~g~~~~~giLl-~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
+.-|+.|...- -.||.-| +..+-|-.-+.+--.+|+|+++||+-+-.
T Consensus 658 l~fPegY~t~V--GERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 658 LQFPEGYNTRV--GERGLKLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred hcCchhhhhhh--hhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 67788887532 2256666 23333444445556799999999987654
No 175
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=67.70 E-value=6.2 Score=27.24 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=14.7
Q ss_pred CCCeEEEEccccccccc
Q psy5205 64 RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~ 80 (113)
..+.+++||-+.+++..
T Consensus 106 ~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 106 ENVGLIVLDSATSLYRL 122 (225)
T ss_pred hcccEEEEeCcHHHhHH
Confidence 68999999999998753
No 176
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=66.61 E-value=11 Score=28.15 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC---CCC--chhHHHHHHHHHHhcCCCCCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS---VLH--PYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~---~~~--~~~~~i~~~lL~~ld~~~~~~ 108 (113)
.+..+..+-..++...+.++++|-+-++.+.-+-. ++. +...|.++++|..|.+..+..
T Consensus 118 ~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~ 181 (325)
T cd00983 118 GEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKS 181 (325)
T ss_pred HHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555667889999999999998642211 111 122356677777666653333
No 177
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=66.09 E-value=7.7 Score=29.48 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.2
Q ss_pred CCeEEEEccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAK 80 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~ 80 (113)
.+.+|+|||+|.+.++
T Consensus 199 ~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGK 214 (405)
T ss_pred hCCEEEEehhhhhcCC
Confidence 3679999999998654
No 178
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=66.07 E-value=4.3 Score=26.60 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=10.6
Q ss_pred CCeEEEEccccccc
Q psy5205 65 TPCVVFIDEIDSVG 78 (113)
Q Consensus 65 ~p~ilfiDEiD~l~ 78 (113)
.|.+++||++|.+.
T Consensus 150 ~~~vlviDd~d~~~ 163 (185)
T PF13191_consen 150 KPLVLVIDDLDWAD 163 (185)
T ss_dssp --EEEEEETTTHHH
T ss_pred CeEEEEEeCCCCCC
Confidence 57999999999664
No 179
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=66.01 E-value=12 Score=27.15 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.4
Q ss_pred CCCeEEEEcccccc
Q psy5205 64 RTPCVVFIDEIDSV 77 (113)
Q Consensus 64 ~~p~ilfiDEiD~l 77 (113)
..+-|+||||+|.+
T Consensus 171 ~~~iViiIDdLDR~ 184 (325)
T PF07693_consen 171 KKRIVIIIDDLDRC 184 (325)
T ss_pred CceEEEEEcchhcC
Confidence 56899999999987
No 180
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.94 E-value=14 Score=29.87 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=24.8
Q ss_pred CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 64 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
..| .++|||+|.=. ++.....+.+.|..+- .+..|++|
T Consensus 453 ~~p-tlIFDEVD~GI--------sG~~A~aVg~~L~~Ls---~~~QVl~V 490 (557)
T COG0497 453 DTP-TLIFDEVDTGI--------SGRVAQAVGKKLRRLS---EHHQVLCV 490 (557)
T ss_pred CCC-eEEEecccCCC--------ChHHHHHHHHHHHHHh---cCceEEEE
Confidence 356 78899999754 3345567777777765 34555543
No 181
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=21 Score=27.18 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=20.0
Q ss_pred HHHHHHHHHHh-CCCeEEEEcccccccccc
Q psy5205 53 RVRDLFKAAKD-RTPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 53 ~l~~~F~~A~~-~~p~ilfiDEiD~l~~~R 81 (113)
.++.+++.-.+ ....|+.+||+|.|..+.
T Consensus 110 ~~~~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 110 ILKRLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred HHHHHHHHHHhcCCeEEEEEcchhhhcccc
Confidence 34444444443 568899999999998764
No 182
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=65.70 E-value=9.1 Score=28.59 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=29.8
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ..+|+.||+..-+
T Consensus 175 ~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~ 210 (388)
T PRK07366 175 HNPTTAIAPLSFFQEAVAFCQQH-DLVLVHDFPYVDL 210 (388)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CeEEEEecchhhc
Confidence 35788888999999999999776 4899999987644
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.66 E-value=22 Score=29.19 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=18.0
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.++++++|.+...++++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~ 102 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKA 102 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh
Confidence 4678999999998888887765
No 184
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.42 E-value=31 Score=24.73 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
..+.++.+.+..+.....|++||-+..++..- +..-+++|++.+-.+...++++++
T Consensus 108 ~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~gKvIil 163 (235)
T COG2874 108 ARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDLGKVIIL 163 (235)
T ss_pred HHHHHHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45667777777777788999999998886432 234678888888888777777664
No 185
>PF05729 NACHT: NACHT domain
Probab=63.85 E-value=22 Score=22.48 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=17.4
Q ss_pred HHHhCCCeEEEEcccccccccc
Q psy5205 60 AAKDRTPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 60 ~A~~~~p~ilfiDEiD~l~~~R 81 (113)
.+....+++++||.+|.+....
T Consensus 76 ~~~~~~~~llilDglDE~~~~~ 97 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQD 97 (166)
T ss_pred HHHcCCceEEEEechHhcccch
Confidence 4446778999999999998644
No 186
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=62.97 E-value=27 Score=25.38 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.7
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++++|.++++++|...+..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~ 33 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS 33 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC
Confidence 4689999999999999887755
No 187
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.83 E-value=6.1 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
.++++||||++..- ..+.+.|+..++.
T Consensus 65 ~~~il~lDEin~a~------------~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 65 KGGILVLDEINRAP------------PEVLESLLSLLEE 91 (139)
T ss_dssp EEEEEEESSCGG--------------HHHHHTTHHHHSS
T ss_pred ceeEEEECCcccCC------------HHHHHHHHHHHhh
Confidence 78999999998652 3455556666554
No 188
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=62.48 E-value=23 Score=23.18 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=10.7
Q ss_pred CCeEEEEcccccc
Q psy5205 65 TPCVVFIDEIDSV 77 (113)
Q Consensus 65 ~p~ilfiDEiD~l 77 (113)
.|.++++||..+=
T Consensus 99 ~~~llllDEp~~g 111 (162)
T cd03227 99 PRPLYILDEIDRG 111 (162)
T ss_pred CCCEEEEeCCCCC
Confidence 7999999997543
No 189
>PRK10865 protein disaggregation chaperone; Provisional
Probab=62.44 E-value=43 Score=28.43 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=19.7
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
..++|||||+|.+ + ..+.+.|++.||.
T Consensus 670 p~~vLllDEieka---------~---~~v~~~Ll~ile~ 696 (857)
T PRK10865 670 PYSVILLDEVEKA---------H---PDVFNILLQVLDD 696 (857)
T ss_pred CCCeEEEeehhhC---------C---HHHHHHHHHHHhh
Confidence 3489999999865 2 3467788888763
No 190
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=61.80 E-value=65 Score=24.39 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 17 DEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 17 ~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
++.++++.+++....-++...+|....+ +.++=|=.-+.|-++.|.||+.||+=|-.
T Consensus 116 ~ei~~RV~elLelVgL~dk~~~yP~qLS-----GGQKQRVaIARALa~~P~iLL~DEaTSAL 172 (339)
T COG1135 116 AEIKQRVAELLELVGLSDKADRYPAQLS-----GGQKQRVAIARALANNPKILLCDEATSAL 172 (339)
T ss_pred HHHHHHHHHHHHHcCChhhhccCchhcC-----cchhhHHHHHHHHhcCCCEEEecCccccC
Confidence 3445556666666333333333322222 33444445566778899999999975543
No 191
>KOG0055|consensus
Probab=61.74 E-value=68 Score=28.56 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=41.4
Q ss_pred hcChhhHhhcCCCCCceeec-hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHH
Q psy5205 30 LKNPEKFSTLGGKLPKGVLL-GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAE 100 (113)
Q Consensus 30 ~~~~~~~~~~g~~~~~giLl-~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ 100 (113)
.+-|+.|..+... +|+-| +.++-|=.-+.|--..|.||++||+=+-. +..+.++|.+.|..
T Consensus 473 ~~lp~g~~T~vge--~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaL--------D~~se~~Vq~ALd~ 534 (1228)
T KOG0055|consen 473 LKLPDGYDTLVGE--RGVQLSGGQKQRIAIARALVRNPKILLLDEATSAL--------DAESERVVQEALDK 534 (1228)
T ss_pred HhhHHhhcccccC--CCCCCChHHHHHHHHHHHHHhCCCEEEecCccccc--------CHHHHHHHHHHHHH
Confidence 4556677655433 56666 56666767777777889999999975543 45566777776644
No 192
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=61.50 E-value=10 Score=29.33 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.9
Q ss_pred CCeEEEEcccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R 81 (113)
.+.+|+|||+|.+.+++
T Consensus 211 ~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred cCCEEEEehhhhhcCCH
Confidence 57899999999996543
No 193
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.82 E-value=26 Score=30.66 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
.|.-+|+.-+-..-.+.++||||+..-.. -...+..++.++. .+...+||
T Consensus 1076 AlAllFAi~~~~PaPf~vLDEVDAaLD~~--------Nv~r~~~~i~e~s---~~sQFIvI 1125 (1163)
T COG1196 1076 ALALLFAIQKYRPAPFYVLDEVDAALDDA--------NVERVARLIKEMS---KETQFIVI 1125 (1163)
T ss_pred HHHHHHHHHhhCCCCeeeeccchhhccHH--------HHHHHHHHHHHhC---cCCeEEEE
Confidence 45567877755555688899999987432 2234445555554 45555554
No 194
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=60.71 E-value=21 Score=22.38 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEc
Q psy5205 14 RGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFID 72 (113)
Q Consensus 14 ~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiD 72 (113)
+++...-+.+.+.+.. +.....+...+..+..++=-..++++++++.+......++|.|
T Consensus 6 ~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~D 65 (122)
T cd00006 6 ATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTD 65 (122)
T ss_pred EcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3444556667777776 4444344444444433222245667777777655566777766
No 195
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=60.33 E-value=11 Score=25.89 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=28.0
Q ss_pred hCCCeEEEEccccccccccCCCC-CCchhHHHHHHHHHHhcCCCCCCce
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQNEGV 110 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~~~-~~~~~~~i~~~lL~~ld~~~~~~~v 110 (113)
...+.+++||-+-++...-..+. ......+.+.+++..|..+....++
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~ 160 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNV 160 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 56789999999998875321111 1122235666777766666433333
No 196
>PRK08068 transaminase; Reviewed
Probab=60.13 E-value=13 Score=27.84 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=29.3
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|.+++.+.++++.+.|+++ .++|+.||+-.-+
T Consensus 178 NPTG~~~s~~~~~~l~~la~~~-~~~ii~Deay~~~ 212 (389)
T PRK08068 178 NPTGAVATKAFFEETVAFAKKH-NIGVVHDFAYGAI 212 (389)
T ss_pred CCCCCcCCHHHHHHHHHHHHHc-CeEEEEehhhhhh
Confidence 5789999999999999999765 6899999987543
No 197
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=60.05 E-value=10 Score=26.63 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=19.8
Q ss_pred CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 66 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 66 p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
--|||+||+-.+ .++++..|++-|+.
T Consensus 107 ~GVLflDE~~ef------------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 107 RGVLFLDELNEF------------DRSVLDALRQPLED 132 (206)
T ss_dssp TSEEEECETTTS-------------HHHHHHHHHHHHH
T ss_pred CCEEEechhhhc------------CHHHHHHHHHHHHC
Confidence 479999998444 46889999988863
No 198
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=59.80 E-value=13 Score=27.00 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHH--hCCCeEEEEcccccccccc
Q psy5205 52 RRVRDLFKAAK--DRTPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 52 ~~l~~~F~~A~--~~~p~ilfiDEiD~l~~~R 81 (113)
..+..+-..+. ...|.||+|||.|+....-
T Consensus 128 ~~l~~li~~l~~~~~~kvvlLIDEYD~p~~~~ 159 (284)
T PF09820_consen 128 DSLKDLIEYLYEKYGKKVVLLIDEYDKPINDA 159 (284)
T ss_pred HHHHHHHHHHHHHhCCceEEEecCccHHHHHH
Confidence 34455555443 3569999999999987654
No 199
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=59.66 E-value=20 Score=24.83 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
+..+..+-+...+..|.+++|||+-++.
T Consensus 106 ~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 106 NKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 3444555555556689999999998774
No 200
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=58.25 E-value=14 Score=28.08 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=31.9
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-.-|.|..++....+++.+.|+++..+.|+.||+..-+
T Consensus 221 p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~ 258 (431)
T PRK15481 221 AHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALL 258 (431)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhh
Confidence 35689999999999999999987756888899987755
No 201
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=58.11 E-value=12 Score=27.09 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
|.-..|-.|.-|....|.|+++||+=+.+
T Consensus 150 SGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 150 SGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 56678899999999999999999986654
No 202
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=57.86 E-value=14 Score=27.04 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++...++++.+.|+++ .+.|+.||+..-+
T Consensus 132 ~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~DE~Y~~~ 167 (332)
T PRK06425 132 DNPLGNLISRDSLLTISEICRKK-GALLFIDEAFIDF 167 (332)
T ss_pred CCCcCCccCHHHHHHHHHHHHHc-CCEEEEecchhcc
Confidence 45788889999999999998655 4788999987654
No 203
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=57.77 E-value=18 Score=28.48 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=15.4
Q ss_pred HHHHhCCCeEEEEcccccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+.+--..|.|+++||+-+-..
T Consensus 411 ar~ilk~p~il~~deatsald 431 (497)
T COG5265 411 ARTILKNPPILILDEATSALD 431 (497)
T ss_pred HHHHhcCCCEEEEehhhhHhh
Confidence 334456899999999876654
No 204
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=57.50 E-value=64 Score=22.59 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
+|+..-.+-... ...|.||++||+-+-.
T Consensus 137 GE~QriAliR~L-q~~P~ILLLDE~TsAL 164 (223)
T COG4619 137 GEKQRIALIRNL-QFMPKILLLDEITSAL 164 (223)
T ss_pred hHHHHHHHHHHh-hcCCceEEecCchhhc
Confidence 455444433322 5679999999986654
No 205
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=56.69 E-value=16 Score=27.56 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++.+.++++.+.|+++ ..+|+.||+-.-+
T Consensus 187 NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~ 221 (409)
T PRK07590 187 NPTGTVLTKEQLKAWVDYAKEN-GSLILFDAAYEAF 221 (409)
T ss_pred CCcCCcCCHHHHHHHHHHHHHc-CeEEEEEccchhh
Confidence 4677777999999999999765 5889999976643
No 206
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=56.63 E-value=16 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=26.6
Q ss_pred CceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 44 PKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 44 ~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
|.|..++.+.++++.+.|+++. .+|+.||+=.
T Consensus 175 PTGav~~~~~l~~i~~~a~~~~-i~ii~DEiY~ 206 (393)
T COG0436 175 PTGAVYSKEELKAIVELAREHD-IIIISDEIYE 206 (393)
T ss_pred CcCcCCCHHHHHHHHHHHHHcC-eEEEEehhhh
Confidence 5777779999999999997755 8888999744
No 207
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=56.59 E-value=39 Score=23.47 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 20 KQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 20 k~~l~~~i~~~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+.+-.+++..++-.....+|..... +.+.-|-..+.|--+.|.+++|||=-
T Consensus 119 ~~~a~ellkrlrl~~~adr~plhls-----ggqqqrvaiaralmmkpqvllfdept 169 (242)
T COG4161 119 LARAEKLLKRLRLKPYADRYPLHLS-----GGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred HHHHHHHHHHhccccccccCceecc-----cchhhhHHHHHHHhcCCcEEeecCcc
Confidence 3444445544555555555544333 23344455566767899999999943
No 208
>PRK10869 recombination and repair protein; Provisional
Probab=56.50 E-value=30 Score=27.79 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
.|.+++|||+|+-... .....+..++..+- ....|++|
T Consensus 452 ~~~~li~DEpd~gld~--------~~~~~v~~~l~~l~---~~~qvi~i 489 (553)
T PRK10869 452 ETPALIFDEVDVGISG--------PTAAVVGKLLRQLG---ESTQVMCV 489 (553)
T ss_pred CCCEEEEECCCCCCCH--------HHHHHHHHHHHHHh---cCCEEEEE
Confidence 5889999999886532 23344555666653 23445543
No 209
>PRK09694 helicase Cas3; Provisional
Probab=56.37 E-value=21 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=24.1
Q ss_pred hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
..+-++|+|||++++ +.+...++..+|..+-.
T Consensus 437 ~La~svvIiDEVHAy---------D~ym~~lL~~~L~~l~~ 468 (878)
T PRK09694 437 GLGRSVLIVDEVHAY---------DAYMYGLLEAVLKAQAQ 468 (878)
T ss_pred hhccCeEEEechhhC---------CHHHHHHHHHHHHHHHh
Confidence 567899999999998 33556677777777654
No 210
>PF13173 AAA_14: AAA domain
Probab=55.93 E-value=11 Score=23.61 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=12.2
Q ss_pred CCCeEEEEcccccc
Q psy5205 64 RTPCVVFIDEIDSV 77 (113)
Q Consensus 64 ~~p~ilfiDEiD~l 77 (113)
..+.++||||+..+
T Consensus 60 ~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 60 PGKKYIFIDEIQYL 73 (128)
T ss_pred cCCcEEEEehhhhh
Confidence 37899999999877
No 211
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=55.65 E-value=18 Score=30.49 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=23.7
Q ss_pred HHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
...+...-+||||||+|.+ + ..+.+.||+.||.
T Consensus 661 ~~v~~~p~~vlllDeieka---------~---~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 661 EAVRRKPYSVVLFDEVEKA---------H---PDVFNVLLQVLDD 693 (852)
T ss_pred HHHHcCCCcEEEEeccccC---------C---HHHHHHHHHHHhc
Confidence 3445556679999999866 2 3577888888864
No 212
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=55.34 E-value=14 Score=27.83 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=14.1
Q ss_pred HHHHHhCCCeEEEEcccccc
Q psy5205 58 FKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 58 F~~A~~~~p~ilfiDEiD~l 77 (113)
+..| ...++++++||+|..
T Consensus 128 L~~A-~~~g~illlDEin~a 146 (327)
T TIGR01650 128 LPWA-LQHNVALCFDEYDAG 146 (327)
T ss_pred chhH-HhCCeEEEechhhcc
Confidence 3444 246799999999977
No 213
>KOG0257|consensus
Probab=54.98 E-value=18 Score=28.14 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.1
Q ss_pred CceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 44 PKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 44 ~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
|.|-+++.+.|+++-+.++++. ++++.||+=...
T Consensus 184 PtGkvfsReeLe~ia~l~~k~~-~lvisDevYe~~ 217 (420)
T KOG0257|consen 184 PTGKVFSREELERIAELCKKHG-LLVISDEVYEWL 217 (420)
T ss_pred CcCcccCHHHHHHHHHHHHHCC-EEEEEhhHhHHH
Confidence 5666669999999999997776 999999986654
No 214
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=54.92 E-value=51 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
....+..+.+.+....|.+++||.+-++
T Consensus 96 ~~~~~~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 96 VVPEFERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred ccHHHHHHHHHHHhcCCCEEEECChHHh
Confidence 4567777777777789999999988776
No 215
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=54.69 E-value=45 Score=20.40 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+|..+..++.-++.++-..+++....+++||+
T Consensus 34 ~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 34 KPDPKTYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred CCCcceeechhHHHHHHHHHhhcCCCEEEECC
Confidence 45567777999999999999999999999995
No 216
>PRK08636 aspartate aminotransferase; Provisional
Probab=53.71 E-value=18 Score=27.19 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=29.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++...++++.+.|+++ .++|+.||+..-+
T Consensus 185 ~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l 220 (403)
T PRK08636 185 HNPTTATVEKSFYERLVALAKKE-RFYIISDIAYADI 220 (403)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccchhh
Confidence 35789999999999999999665 4888899987644
No 217
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=53.53 E-value=37 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 56 DLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 56 ~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.+|.......|.++++||+|+-+. ......+..+|..+
T Consensus 1087 ~~~~~~~~~~~~~~~lDE~~~~ld--------~~~~~~~~~~l~~~ 1124 (1164)
T TIGR02169 1087 FIFAIQRYKPSPFYAFDEVDMFLD--------GVNVERVAKLIREK 1124 (1164)
T ss_pred HHHHHHhcCCCCcEEecccccccC--------HHHHHHHHHHHHHh
Confidence 334333335678999999998763 22334455566555
No 218
>KOG0345|consensus
Probab=53.49 E-value=17 Score=29.04 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=32.0
Q ss_pred hHHHHHHHHHH-HHh---CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 50 GARRVRDLFKA-AKD---RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 50 ~e~~l~~~F~~-A~~---~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
|+-++.++|.. +.. .+-.+|++||+|.+.. -...+-+|++|..|..
T Consensus 138 TPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld--------mgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 138 TPGRLLDILQREAEKLSFRSLEILVLDEADRLLD--------MGFEASVNTILSFLPK 187 (567)
T ss_pred CchhHHHHHhchhhhccccccceEEecchHhHhc--------ccHHHHHHHHHHhccc
Confidence 78888888877 332 2578999999999862 2234556777776653
No 219
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=53.47 E-value=61 Score=21.17 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...++.+.+++.++
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~L--------D~~~~~~l~~~l~~~ 128 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAAL--------TPAEVERLFKVIRRL 128 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCC--------CHHHHHHHHHHHHHH
Confidence 34445556677778899999999953222 334455555566555
No 220
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=53.28 E-value=34 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
+..+.++...+....|.++++||+-++.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 4556666777667789999999998875
No 221
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=52.47 E-value=19 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.1
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.|+++ ..+|+.||+-.-+
T Consensus 181 NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l 215 (409)
T PLN00143 181 NPCGSVYSYEHLNKIAETARKL-GILVIADEVYGHI 215 (409)
T ss_pred CCCCCccCHHHHHHHHHHHHHc-CCeEEEEcccccc
Confidence 4788888999999999999765 4889999987654
No 222
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=52.24 E-value=89 Score=22.69 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=21.1
Q ss_pred eeechHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 46 GVLLGARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 46 giLl~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
|-|-+.+.=|-+++.|-...|.++++||
T Consensus 138 ~~LSGGQ~QRV~lARAL~~~p~lllLDE 165 (254)
T COG1121 138 GELSGGQKQRVLLARALAQNPDLLLLDE 165 (254)
T ss_pred cccCcHHHHHHHHHHHhccCCCEEEecC
Confidence 3333556666677888888999999999
No 223
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=52.07 E-value=20 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
-|.|..++.+.++++.+.++++. ++|+.||+-.
T Consensus 135 NPTG~~~s~~~l~~l~~~~~~~~-~~iI~DE~y~ 167 (330)
T PRK05664 135 NPTGRRFDPARLLAWHARLAARG-GWLVVDEAFM 167 (330)
T ss_pred CCCCCccCHHHHHHHHHHHHhcC-CEEEEECCcc
Confidence 47888889999999998886654 6888999753
No 224
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=51.97 E-value=21 Score=26.87 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=29.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.|+++ ..+|+.||+..-+
T Consensus 184 NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~y~~~ 218 (402)
T TIGR03542 184 NPTGTVLTKEQLKELVDYANEH-GSLILFDAAYSAF 218 (402)
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CeEEEEEchhhhh
Confidence 4678888999999999999766 5889999987754
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=51.67 E-value=11 Score=26.29 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.2
Q ss_pred CCeEEEEccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAK 80 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~ 80 (113)
.+.+|+|||++.+.++
T Consensus 91 ~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 91 QQDLVCLDDLQAVIGN 106 (229)
T ss_pred cCCEEEEeChhhhcCC
Confidence 4679999999999654
No 226
>PRK06290 aspartate aminotransferase; Provisional
Probab=51.59 E-value=22 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ..+|+.||+-.-+
T Consensus 189 ~NPTG~v~s~e~l~~l~~la~~~-~~~iI~DEaY~~~ 224 (410)
T PRK06290 189 NNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAAL 224 (410)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecchhhc
Confidence 35788888999999999999765 4789999987754
No 227
>PLN02231 alanine transaminase
Probab=51.58 E-value=20 Score=28.60 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++.+.++++.+.|+++. .+|+.||+-.-.
T Consensus 282 NPTG~vls~e~l~~Iv~~a~~~~-l~lI~DEvY~~l 316 (534)
T PLN02231 282 NPTGQVLAEENQRDIVEFCKQEG-LVLLADEVYQEN 316 (534)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcC-CEEEEEccchhc
Confidence 47889999999999999997765 788899986543
No 228
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=51.50 E-value=65 Score=21.98 Aligned_cols=44 Identities=9% Similarity=-0.002 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+=. +....+.+.+++.++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 183 (214)
T PRK13543 140 AGQKKRLALARLWLSPAPLWLLDEPYANL--------DLEGITLVNRMISAH 183 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHH
Confidence 44455556677778899999999953322 334456666666655
No 229
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=51.50 E-value=22 Score=26.22 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
..|.|..++++.++++.+.|+++ .+.++.||+-
T Consensus 152 ~NPTG~~~~~~~~~~i~~~a~~~-~~~ii~De~y 184 (356)
T PRK08056 152 NNPTGLLPERQLLQAIAERCKSL-NIALILDEAF 184 (356)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhc-CCEEEEecch
Confidence 45778888999999999999665 4889999984
No 230
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=51.18 E-value=20 Score=28.00 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=29.0
Q ss_pred cCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 39 LGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 39 ~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+|+....-.++.+..+.++.+.+.+..|.+++||.+-.+..
T Consensus 144 lg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 144 LGLPEPNLYVLSETNWEQICANIEEENPQACVIDSIQTLYS 184 (454)
T ss_pred cCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEEecchhhcc
Confidence 34333333344556677888888888999999999998864
No 231
>PRK09354 recA recombinase A; Provisional
Probab=51.06 E-value=31 Score=26.15 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccC--CC-C--CCchhHHHHHHHHHHhcCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT--NS-V--LHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~--~~-~--~~~~~~~i~~~lL~~ld~~ 104 (113)
.+..+..+=..++...+.+++||=+-++.++-+ +. + ..+...|.++++|..|-++
T Consensus 123 ~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~ 182 (349)
T PRK09354 123 GEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGN 182 (349)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHH
Confidence 344444444455677899999999999886321 11 1 1123345666666655554
No 232
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=50.91 E-value=56 Score=24.38 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhC----CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 50 GARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
+-..||++-+.+... +--|++||++|.+- ....|.||.-|+.-..+.
T Consensus 94 ~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~~ 144 (319)
T PRK08769 94 VIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEPSPGR 144 (319)
T ss_pred cHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCCCCCC
Confidence 445677776666322 23599999999982 346799999999765444
No 233
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=50.52 E-value=22 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCeEEEEccccccc
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
+..+...+. ..+.+++||-+-++.
T Consensus 93 ~~~~~~~~~-~~~~lvvIDsi~~l~ 116 (218)
T cd01394 93 IQETETFAD-EKVDLVVVDSATALY 116 (218)
T ss_pred HHHHHHHHh-cCCcEEEEechHHhh
Confidence 444444443 348999999999886
No 234
>COG4517 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.46 E-value=31 Score=21.27 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=30.7
Q ss_pred CCceeec--hHHHHHHHHHHHHhCC---CeEEEEccccccccccC
Q psy5205 43 LPKGVLL--GARRVRDLFKAAKDRT---PCVVFIDEIDSVGAKRT 82 (113)
Q Consensus 43 ~~~giLl--~e~~l~~~F~~A~~~~---p~ilfiDEiD~l~~~R~ 82 (113)
...|++. |+.+++.-|+-....- -+|+=|||+|..+.++-
T Consensus 44 ~~s~lvVDPseEkLk~eF~gv~rs~~PmhaivRIdeV~~kG~~~I 88 (109)
T COG4517 44 VHSGLVVDPSEEKLKHEFAGVKRSHLPMHAIVRIDEVDKKGQSVI 88 (109)
T ss_pred cccceEECccHHHHHHHhhccccccCcceeEEeeeehhhcCCeee
Confidence 4455555 8999999998775432 47999999999998774
No 235
>PRK08637 hypothetical protein; Provisional
Probab=50.17 E-value=25 Score=26.30 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.7
Q ss_pred CCCceeechHHHHHHHHHHHHh----CCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKD----RTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~----~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++...++++.+.|++ ....+|+.||+..-+
T Consensus 156 ~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l 196 (388)
T PRK08637 156 NNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGL 196 (388)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhc
Confidence 4678999999999999998764 356899999987643
No 236
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=50.17 E-value=21 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.9
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
-|.|..++.+.++++.+.|+++ ..+|+.||+-.
T Consensus 190 NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~ 222 (416)
T PRK09440 190 NPTGNVLTDEELEKLDALARQH-NIPLLIDNAYG 222 (416)
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CCcEEEeCCcc
Confidence 4678888999999999999665 47788999864
No 237
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=49.47 E-value=8.7 Score=27.94 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.7
Q ss_pred CCCeEEEEcccccccccc
Q psy5205 64 RTPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~R 81 (113)
..+.++++||+|+++-..
T Consensus 196 r~~~~~ivDEvDs~LiDe 213 (266)
T PF07517_consen 196 RGFDFAIVDEVDSILIDE 213 (266)
T ss_dssp SSSSEEEECTHHHHTTTG
T ss_pred CCCCEEEEeccceEEEec
Confidence 467899999999998544
No 238
>KOG0479|consensus
Probab=49.31 E-value=38 Score=28.03 Aligned_cols=13 Identities=46% Similarity=0.596 Sum_probs=11.1
Q ss_pred CeEEEEccccccc
Q psy5205 66 PCVVFIDEIDSVG 78 (113)
Q Consensus 66 p~ilfiDEiD~l~ 78 (113)
..|+.|||+|.+.
T Consensus 399 RGVVCIDEFDKMs 411 (818)
T KOG0479|consen 399 RGVVCIDEFDKMS 411 (818)
T ss_pred CceEEehhccccc
Confidence 5689999999984
No 239
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=48.56 E-value=23 Score=27.34 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCC-----CeEEEEcccccc
Q psy5205 54 VRDLFKAAKDRT-----PCVVFIDEIDSV 77 (113)
Q Consensus 54 l~~~F~~A~~~~-----p~ilfiDEiD~l 77 (113)
+.+.-.+..+.+ |-||||||+.-|
T Consensus 262 Ink~V~~wieegkAelvpGVLFIDEvHmL 290 (398)
T PF06068_consen 262 INKKVNKWIEEGKAELVPGVLFIDEVHML 290 (398)
T ss_dssp HHHHHHHHHHCTSEEEEE-EEEEESGGGS
T ss_pred HhHHHHHHHhcCceEEecceEEecchhhc
Confidence 445555554443 889999998765
No 240
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=48.52 E-value=21 Score=25.89 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
..+...++..++.+.|.++++||+
T Consensus 180 ~~k~~~~~~~i~~~~P~villDE~ 203 (270)
T TIGR02858 180 CPKAEGMMMLIRSMSPDVIVVDEI 203 (270)
T ss_pred chHHHHHHHHHHhCCCCEEEEeCC
Confidence 334556888888899999999994
No 241
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.35 E-value=61 Score=21.90 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-+-.+..|-...|.++++||-
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4445556677777889999999994
No 242
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=48.24 E-value=28 Score=25.46 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 40 GGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 40 g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+...|.|..++...++++.+.++++ ..+++.||+...+.
T Consensus 156 ~p~nPtG~~~~~~~l~~l~~~~~~~-~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 156 NPNNPTGSVLSLEELRELAELAREY-NIIIIVDEAYSDLI 194 (363)
T ss_dssp SSBTTTTBB--HHHHHHHHHHHHHT-TSEEEEEETTTTGB
T ss_pred ccccccccccccccccchhhhhccc-ccceeeeeceeccc
Confidence 3456788888999999999999777 68889999887764
No 243
>PLN02397 aspartate transaminase
Probab=48.00 E-value=25 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=29.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ..+++.||+-.-+
T Consensus 204 ~NPTG~v~s~e~l~~i~~~a~~~-~~~vI~De~Y~~l 239 (423)
T PLN02397 204 HNPTGVDPTPEQWEQISDLIKSK-NHLPFFDSAYQGF 239 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccCCc
Confidence 45788888999999999999765 4788999986544
No 244
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=47.95 E-value=31 Score=21.41 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.+..|-...|.++++||-
T Consensus 111 ~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 111 GGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4555566777777889999999994
No 245
>PRK09148 aminotransferase; Validated
Probab=47.74 E-value=27 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=29.1
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.|+++ ...|+.||+..-+
T Consensus 176 NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~ 210 (405)
T PRK09148 176 NPTAYVADLDFYKDVVAFAKKH-DIIILSDLAYSEI 210 (405)
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhh
Confidence 4788888999999999999765 4889999987654
No 246
>PRK10534 L-threonine aldolase; Provisional
Probab=47.34 E-value=28 Score=25.23 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=26.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
.|+.|.+++...++++.+.++++ .+++++||+-
T Consensus 137 np~~G~v~~~~~l~~i~~~~~~~-~~~lvvDEA~ 169 (333)
T PRK10534 137 NTHNGKVLPREYLKQAWEFTRER-NLALHVDGAR 169 (333)
T ss_pred cCCCCeecCHHHHHHHHHHHHHc-CCeEEeeHHH
Confidence 46678888989999988888655 4789999963
No 247
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=47.27 E-value=25 Score=25.28 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=24.8
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceE
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 111 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~ 111 (113)
..-|++|||+|.+-. ..-|.++.-|..-..+..++
T Consensus 109 ~~kviiidead~mt~------------~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 109 GYKVVIIDEADKLTE------------DAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred CceEEEeCcHHHHhH------------HHHHHHHHHhccCCCCeEEE
Confidence 357999999999954 45678888887655544433
No 248
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=47.13 E-value=93 Score=22.90 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHH
Q psy5205 4 EEINITFKDVRGVDEAKQELKEI 26 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~ 26 (113)
.-+.+.+++|.|.+.+++.|-+-
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~N 75 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRN 75 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHH
Confidence 34468999999999999888654
No 249
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.12 E-value=81 Score=25.27 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=19.2
Q ss_pred CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 66 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 66 p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
|.+++|||.|+-.. ......+..+|..+-
T Consensus 463 ~~~lilDEp~~gld--------~~~~~~~~~~l~~l~ 491 (563)
T TIGR00634 463 VTTLIFDEVDVGVS--------GETAQAIAKKLAQLS 491 (563)
T ss_pred CCEEEEECCCCCCC--------HHHHHHHHHHHHHHh
Confidence 68999999887653 233455556666653
No 250
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=47.11 E-value=28 Score=26.04 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ...|+.||+..-+
T Consensus 176 ~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~ 211 (396)
T PRK09147 176 GNPTGAVLPLDDWKKLFALSDRY-GFVIASDECYSEI 211 (396)
T ss_pred CCCcCccCCHHHHHHHHHHHHHc-CeEEEeecccccc
Confidence 45789999999999999999655 5888899987654
No 251
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=46.98 E-value=1e+02 Score=21.90 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 55 RDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 55 ~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
|-.++-+-+..|.++++||-=+- -+...++-+.+++..+.
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~--------LD~~~~~~l~~~l~~L~ 185 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAG--------LDPKGRRELLELLKKLK 185 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCC--------CCHHHHHHHHHHHHHHH
Confidence 34556667899999999994222 13344555566666554
No 252
>PRK07337 aminotransferase; Validated
Probab=46.76 E-value=30 Score=25.78 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.6
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
..|.|..++.+.++++.+.|+++. .++++||+-.
T Consensus 173 ~NPtG~~~~~~~~~~i~~~a~~~~-~~ii~De~y~ 206 (388)
T PRK07337 173 SNPTGTSIAPDELRRIVEAVRARG-GFTIVDEIYQ 206 (388)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHCC-CEEEEecccc
Confidence 346788889999999999997654 7888999855
No 253
>PLN02368 alanine transaminase
Probab=46.72 E-value=27 Score=26.73 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=29.3
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++.+.++++.+.|+++ ..+|+.||+-.-+
T Consensus 221 NPTG~v~s~e~l~~l~~~a~~~-~~~II~DE~Y~~l 255 (407)
T PLN02368 221 NPTGQCLSEANLREILKFCYQE-RLVLLGDEVYQQN 255 (407)
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CCEEEEEcccccc
Confidence 4788888999999999999776 5888899986554
No 254
>KOG0055|consensus
Probab=46.59 E-value=64 Score=28.71 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=33.0
Q ss_pred ceeec-hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHH
Q psy5205 45 KGVLL-GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 98 (113)
Q Consensus 45 ~giLl-~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL 98 (113)
+|.-| +.++=|=..+.|--..|.||++||+=+-. +.++.++|.+-|
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSAL--------DseSErvVQeAL 1169 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL--------DSESERVVQEAL 1169 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh--------hhhhHHHHHHHH
Confidence 56777 56777777888888899999999986654 334456665543
No 255
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=46.41 E-value=22 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=18.9
Q ss_pred eEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 67 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 67 ~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+|+|+|||+..- ..+.|.||..|+.
T Consensus 114 ~ill~DEInra~------------p~~q~aLl~~l~e 138 (329)
T COG0714 114 VILLLDEINRAP------------PEVQNALLEALEE 138 (329)
T ss_pred eEEEEeccccCC------------HHHHHHHHHHHhC
Confidence 599999996542 3577888888876
No 256
>PRK08960 hypothetical protein; Provisional
Probab=46.40 E-value=28 Score=25.97 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
-|.|..++.+.++++.+.|+++ ..++++||+-.
T Consensus 176 NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~Y~ 208 (387)
T PRK08960 176 NPTGTLLSRDELAALSQALRAR-GGHLVVDEIYH 208 (387)
T ss_pred CCCCcCcCHHHHHHHHHHHHHc-CCEEEEEcccc
Confidence 5788888999999999999765 57889999744
No 257
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=45.98 E-value=55 Score=24.42 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHH----hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 50 GARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 50 ~e~~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
+-..+|++-+.+. ....-|++||++|.+- ....|.||.-|+.-.+
T Consensus 87 ~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEPp~ 135 (328)
T PRK05707 87 KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEPSG 135 (328)
T ss_pred CHHHHHHHHHHHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCCCC
Confidence 3456777666653 2345688999999883 3567999999997543
No 258
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=45.85 E-value=31 Score=24.20 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=14.4
Q ss_pred HHhCCCeEEEEccccccc
Q psy5205 61 AKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 61 A~~~~p~ilfiDEiD~l~ 78 (113)
.....+.++++||++.+.
T Consensus 119 ~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HhCCCCeEEEEECcccCC
Confidence 346678999999999873
No 259
>PLN02187 rooty/superroot1
Probab=45.81 E-value=28 Score=27.08 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
-|.|..++.+.++++.+.|+++. .+|+.||+-.-
T Consensus 215 NPTG~v~s~e~l~~i~~~a~~~~-i~iI~DE~Y~~ 248 (462)
T PLN02187 215 NPCGNVYSHDHLKKVAETARKLG-IMVISDEVYDR 248 (462)
T ss_pred CCCCCccCHHHHHHHHHHHHHCC-CEEEEeccccc
Confidence 46788889999999999997654 88899997654
No 260
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=45.50 E-value=19 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCeEEEEccccc
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+-++++.|.+.+..++||+|+|-
T Consensus 45 Ip~~~kla~k~G~~vlvf~dL~D 67 (147)
T COG4080 45 IPEVLKLAFKLGKPVLVFPDLDD 67 (147)
T ss_pred cHHHHHHHHHhCCcEEEehhHHH
Confidence 77899999999999999999875
No 261
>PTZ00376 aspartate aminotransferase; Provisional
Probab=45.45 E-value=29 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.4
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
-.-|.|..++.+.++++.+.|+++. .+|+.||+-.
T Consensus 185 p~NPTG~~~s~~~~~~l~~~a~~~~-~~ii~De~Y~ 219 (404)
T PTZ00376 185 AHNPTGVDPTEEQWKEIADVMKRKN-LIPFFDMAYQ 219 (404)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-cEEEEehhhc
Confidence 3457888889999999999997764 6888899743
No 262
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=45.29 E-value=35 Score=25.44 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=26.4
Q ss_pred hhcCCCCCceeechHHHHHHHHHHHHhC-CCeEEEEcccccccc
Q psy5205 37 STLGGKLPKGVLLGARRVRDLFKAAKDR-TPCVVFIDEIDSVGA 79 (113)
Q Consensus 37 ~~~g~~~~~giLl~e~~l~~~F~~A~~~-~p~ilfiDEiD~l~~ 79 (113)
+++|+..|-|. ++-.+++++|.+. -|-|.|||-.-+.-+
T Consensus 126 rNFGm~~PeGy----RKAlRlm~~AekF~lPiitfIDT~GAypG 165 (317)
T COG0825 126 RNFGMPRPEGY----RKALRLMKLAEKFGLPIITFIDTPGAYPG 165 (317)
T ss_pred hcCCCCCchHH----HHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 45555555543 5556778888775 599999998776644
No 263
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=45.27 E-value=32 Score=25.55 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
.-|.|..++...++++.+.|+++ ...|+.||+-.-
T Consensus 174 ~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~ 208 (383)
T TIGR03540 174 NNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSE 208 (383)
T ss_pred CCCcCccCCHHHHHHHHHHHHHc-CEEEEEecchhh
Confidence 35788888999999999999766 488999998763
No 264
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.27 E-value=67 Score=22.46 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-+-.+..|-...|.++++||-
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEP 176 (253)
T PRK14261 152 GGQQQRLCIARTLAVNPEVILMDEP 176 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3444555666777788999999994
No 265
>PRK06207 aspartate aminotransferase; Provisional
Probab=45.23 E-value=30 Score=26.20 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.|+++ .+.|+.||+.+-+
T Consensus 189 NPTG~~~s~e~l~~l~~~a~~~-~~~iI~De~Y~~~ 223 (405)
T PRK06207 189 NPAGVVYSAEEIAQIAALARRY-GATVIVDQLYSRL 223 (405)
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccccc
Confidence 5788888999999999999765 4889999987754
No 266
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=45.22 E-value=67 Score=21.53 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=12.4
Q ss_pred CCCeEEEEccccccc
Q psy5205 64 RTPCVVFIDEIDSVG 78 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~ 78 (113)
..|.++++||.++-+
T Consensus 115 ~~p~llilDEp~~~L 129 (178)
T cd03239 115 KPSPFYVLDEIDAAL 129 (178)
T ss_pred CCCCEEEEECCCCCC
Confidence 579999999987655
No 267
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=45.03 E-value=25 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEccc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+.++.+++.| ..|+++++||+
T Consensus 98 ~~~~~il~~~--~~~sLvLlDE~ 118 (218)
T cd03286 98 SETANILRHA--TPDSLVILDEL 118 (218)
T ss_pred HHHHHHHHhC--CCCeEEEEecc
Confidence 3455555554 57999999995
No 268
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.02 E-value=1e+02 Score=21.42 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +......+.+++.++
T Consensus 145 ~G~~qrv~laral~~~p~lllLDEP~~~L--------D~~~~~~l~~~l~~~ 188 (246)
T PRK14269 145 GGQQQRLCIARALAIKPKLLLLDEPTSAL--------DPISSGVIEELLKEL 188 (246)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHH
Confidence 44556666777778899999999954332 223344445555554
No 269
>PRK08354 putative aminotransferase; Provisional
Probab=44.99 E-value=28 Score=25.21 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++.+.++++.+.|+++ ...++.||+..-+
T Consensus 128 NPTG~~~~~~~l~~l~~~a~~~-~~~li~De~y~~f 162 (311)
T PRK08354 128 NPDGKFYNFKELKPLLDAVEDR-NALLILDEAFIDF 162 (311)
T ss_pred CCCCCccCHHHHHHHHHHhhhc-CcEEEEeCcchhc
Confidence 5788888999999999988654 5888999987544
No 270
>PRK07681 aspartate aminotransferase; Provisional
Probab=44.84 E-value=32 Score=25.84 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=29.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ..+|+.||+..-+
T Consensus 176 ~NPTG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~ 211 (399)
T PRK07681 176 GNPVPAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEF 211 (399)
T ss_pred CCCcCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhh
Confidence 34788888999999999999665 4788999987744
No 271
>PRK07324 transaminase; Validated
Probab=44.72 E-value=34 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=27.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.|.|..++...++++.+.|+++. +.++.||+-.
T Consensus 164 NPtG~~~~~~~l~~i~~~a~~~~-~~ii~De~y~ 196 (373)
T PRK07324 164 NPTGALMDRAYLEEIVEIARSVD-AYVLSDEVYR 196 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CEEEEEcccc
Confidence 46777778899999999997765 8999999854
No 272
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=44.68 E-value=21 Score=26.40 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
..|.|.+++.+.++++.+.+.+ .+++++||+-.
T Consensus 155 nNPTG~~~~~~~l~~l~~~~~~--~~~vivDEay~ 187 (351)
T PRK01688 155 NNPTGNLINPQDLRTLLELTRG--KAIVVADEAYI 187 (351)
T ss_pred CCCCCCCCCHHHHHHHHHhCCC--CcEEEEECchh
Confidence 3577888899999999887754 47899999854
No 273
>PF12846 AAA_10: AAA-like domain
Probab=44.41 E-value=22 Score=24.96 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCCeEEEEccccccccc
Q psy5205 64 RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~ 80 (113)
..|+++++||+..+...
T Consensus 219 ~~~~~i~iDEa~~~~~~ 235 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSN 235 (304)
T ss_pred CceEEEEeCCccccccc
Confidence 57999999999888765
No 274
>PRK05839 hypothetical protein; Provisional
Probab=44.35 E-value=31 Score=25.73 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.9
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++.+.++++.+.|+++ -+.|+.||+-.-+
T Consensus 166 NPTG~~~s~~~l~~i~~~~~~~-~~~ii~DE~Y~~~ 200 (374)
T PRK05839 166 NPTGRTLSLEELIEWVKLALKH-DFILINDECYSEI 200 (374)
T ss_pred CCcCcccCHHHHHHHHHHHHHc-CCEEEeccchhhc
Confidence 4677777999999999999665 5888899986644
No 275
>PRK06348 aspartate aminotransferase; Provisional
Probab=44.17 E-value=30 Score=25.85 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=29.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++...++++.+.|+++ ..+|+.||+-.-+
T Consensus 172 ~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~ 207 (384)
T PRK06348 172 NNPTGAVFSKETLEEIAKIAIEY-DLFIISDEVYDGF 207 (384)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHC-CeEEEEecccccc
Confidence 34788888999999999999765 5889999986643
No 276
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=44.11 E-value=1.1e+02 Score=21.33 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.++|.++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~ 192 (250)
T PRK14240 149 GGQQQRLCIARALAVEPEVLLMDEPTSAL--------DPISTLKIEELIQEL 192 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 44556666777778899999999954332 334455566666666
No 277
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=44.04 E-value=34 Score=25.25 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=27.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
..|.|..++.+.++++.+.|+++ .++++.||+-.-
T Consensus 152 ~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~ 186 (357)
T TIGR03539 152 GNPTGRVLSVDELRAIVAWARER-GAVVASDECYLE 186 (357)
T ss_pred CCCcCccCCHHHHHHHHHHHHHc-CeEEEEecchhh
Confidence 34667777889999999999765 588889998653
No 278
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.94 E-value=1.1e+02 Score=21.30 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+...-+-.+..|-...|.++++||--+=. +......+.++|.++.
T Consensus 148 ~G~~qrv~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~ 192 (249)
T PRK14253 148 GGQQQRLCIARTIAMEPDVILMDEPTSAL--------DPIATHKIEELMEELK 192 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHh
Confidence 34444555666767889999999954322 3344556666666663
No 279
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=43.81 E-value=1.1e+02 Score=22.33 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHHh-cChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 14 RGVDEAKQELKEIVEFL-KNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 14 ~G~~~~k~~l~~~i~~~-~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
.|+++..+++.+++..+ -.++.+.++-.. |-+.+.=|=.++.|-...|.+|++||.=+-
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e-----LSGGQ~QRiaIARAL~~~PklLIlDEptSa 171 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHE-----LSGGQRQRIAIARALIPEPKLLILDEPTSA 171 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchh-----cChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence 56666666777777763 334444433222 224455555666777778999999996443
No 280
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=43.73 E-value=99 Score=20.78 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhCC--CeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRT--PCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~--p~ilfiDEi 74 (113)
....-+-.+..|-... |.++++||-
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEP 116 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEP 116 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCC
Confidence 3344555566666778 999999995
No 281
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=43.65 E-value=17 Score=27.53 Aligned_cols=28 Identities=21% Similarity=0.635 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCeEEEEccc-cccccccC
Q psy5205 55 RDLFKAAKDRTPCVVFIDEI-DSVGAKRT 82 (113)
Q Consensus 55 ~~~F~~A~~~~p~ilfiDEi-D~l~~~R~ 82 (113)
+.+|..|.+.+|--|++||+ |.|++.++
T Consensus 186 ~NiF~~Aa~~GPiaIImDECMe~Lg~~~~ 214 (369)
T PF02456_consen 186 NNIFAQAAKKGPIAIIMDECMEKLGSHKS 214 (369)
T ss_pred hHHHHHHHhcCCEEEEhHHHHHHhcCCCC
Confidence 46999999999999999997 55665543
No 282
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=43.61 E-value=30 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=27.8
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
-|.|.+++...++++.+.|+++ ..+|+.||+-.-
T Consensus 292 NPTG~v~~~~~l~~i~~~a~~~-~~~ii~DE~Y~~ 325 (517)
T PRK13355 292 NPTGALYPREVLQQIVDIAREH-QLIIFSDEIYDR 325 (517)
T ss_pred CCCCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhh
Confidence 4678888999999999999776 478899998653
No 283
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=43.56 E-value=99 Score=20.75 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
..-+-.+..|-...|.++++||--+-. +...++.+.+++.++
T Consensus 116 ~~qrv~laral~~~p~illlDEP~~~L--------D~~~~~~l~~~l~~~ 157 (194)
T cd03213 116 ERKRVSIALELVSNPSLLFLDEPTSGL--------DSSSALQVMSLLRRL 157 (194)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHH
Confidence 334445666667889999999954322 333344555555554
No 284
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=43.45 E-value=29 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|.+++...+.++.+.+.+. .+++++||+-.-+
T Consensus 141 NPTG~~~s~~~l~~l~~~~~~~-~~~vI~DEay~~~ 175 (339)
T PRK06959 141 NPTAERLPAARLLRWHAQLAAR-GGTLIVDEAFADT 175 (339)
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccC
Confidence 4678888888898887776554 4677889975543
No 285
>PRK09265 aminotransferase AlaT; Validated
Probab=43.38 E-value=31 Score=25.92 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.4
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++.+.++++.+.|+++. .+++.||+..-+
T Consensus 179 NPtG~~~~~~~~~~i~~~a~~~~-~~ii~De~y~~~ 213 (404)
T PRK09265 179 NPTGAVYSKELLEEIVEIARQHN-LIIFADEIYDKI 213 (404)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCC-CEEEEehhhhhc
Confidence 46788889999999999997664 788999986543
No 286
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=43.06 E-value=32 Score=25.80 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|.+++...++++-+.|+++ .++++.||+..-+
T Consensus 179 NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~ 213 (401)
T TIGR01264 179 NPCGSVFSRQHLEEILAVAERQ-CLPIIADEIYGDM 213 (401)
T ss_pred CCCCCCCCHHHHHHHHHHHHHC-CCEEEEEhhhhhh
Confidence 4788888999999999999664 4788999987754
No 287
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=43.00 E-value=20 Score=21.32 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=9.5
Q ss_pred hCCCeEEEEccc
Q psy5205 63 DRTPCVVFIDEI 74 (113)
Q Consensus 63 ~~~p~ilfiDEi 74 (113)
..+|.++|+||+
T Consensus 61 ~~~~~~l~lDEa 72 (90)
T PF13558_consen 61 GDSPRLLFLDEA 72 (90)
T ss_dssp -TTBSEEEEEST
T ss_pred CCCcCEEEEeCC
Confidence 346899999996
No 288
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=42.88 E-value=93 Score=22.23 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+...-+-.+..|-...|.++++||--+
T Consensus 146 ~Gq~qrv~Laral~~~p~iLlLDEPt~ 172 (264)
T PRK13546 146 SGMRAKLGFSINITVNPDILVIDEALS 172 (264)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 344444556777778999999999543
No 289
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.77 E-value=25 Score=28.09 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=18.5
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|+++.|.+...+++.+.+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~ 230 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL 230 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH
Confidence 5688999999999988887755
No 290
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=42.76 E-value=68 Score=22.53 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=10.9
Q ss_pred CCeEEEEccccccc
Q psy5205 65 TPCVVFIDEIDSVG 78 (113)
Q Consensus 65 ~p~ilfiDEiD~l~ 78 (113)
.|.++++||..+-+
T Consensus 177 ~p~~lllDEPt~~L 190 (247)
T cd03275 177 PAPFFVLDEVDAAL 190 (247)
T ss_pred CCCEEEEecccccC
Confidence 48999999976544
No 291
>PF14624 Vwaint: VWA / Hh protein intein-like
Probab=42.68 E-value=32 Score=20.34 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.7
Q ss_pred HHHHHHHH-HHHHHhcChhhHhhcC
Q psy5205 17 DEAKQELK-EIVEFLKNPEKFSTLG 40 (113)
Q Consensus 17 ~~~k~~l~-~~i~~~~~~~~~~~~g 40 (113)
..+..+|. ++...+.+.+.|.+||
T Consensus 5 ~~L~~eL~~qi~~a~~~~~~y~~~G 29 (80)
T PF14624_consen 5 QSLMAELRGQISEAMSSREYYERWG 29 (80)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHhh
Confidence 45666777 6666699999999988
No 292
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=42.43 E-value=89 Score=23.59 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHH----hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 50 GARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 50 ~e~~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
+-..+|++-+.+. ..+--|++||++|.+- ...-|.||.-|+.-..+.
T Consensus 113 ~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t 163 (342)
T PRK06964 113 KIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEEPPPGT 163 (342)
T ss_pred CHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCcCc
Confidence 3455666655542 2234488999998882 356799999999754433
No 293
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=42.32 E-value=1.1e+02 Score=21.07 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.+++..+-
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~ 190 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGM--------TDEETEKTAELLKSLA 190 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCC--------CHHHHHHHHHHHHHHh
Confidence 44455556677777899999999953322 3344555666666653
No 294
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=42.04 E-value=23 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHhCCCeEEEEcccccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~ 79 (113)
++++.+.|.|+|+||=..+..
T Consensus 96 ~e~~~~~P~vv~vd~~N~i~~ 116 (126)
T TIGR00223 96 EEARTHRPNVAYFEGDNEIKR 116 (126)
T ss_pred HHHhcCCCEEEEECCCCCEEE
Confidence 456679999999999665543
No 295
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=42.00 E-value=22 Score=22.95 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=15.0
Q ss_pred HHHHhCCCeEEEEcccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l 77 (113)
++|+.++|-|+|+||=..+
T Consensus 95 ~e~~~~~Pkvv~~d~~N~i 113 (126)
T COG0853 95 EEAKTHKPKVVVVDEKNEI 113 (126)
T ss_pred HHHhccCCeEEEECCCCch
Confidence 4667899999999995444
No 296
>KOG1051|consensus
Probab=42.00 E-value=36 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHH-hCCCeEEEEccccccccccCC
Q psy5205 50 GARRVRDLFKAAK-DRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 50 ~e~~l~~~F~~A~-~~~p~ilfiDEiD~l~~~R~~ 83 (113)
.|.+++.+-+++. .....|||+||+..+.+...+
T Consensus 264 ~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~ 298 (898)
T KOG1051|consen 264 FEERLKELLKEVESGGGGVILFLGELHWLVGSGSN 298 (898)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc
Confidence 5788999999988 557889999999999987655
No 297
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=41.89 E-value=36 Score=25.48 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=29.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++.+.|+++ ...+++||+-.-+
T Consensus 176 ~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~D~~y~~~ 211 (391)
T PRK07309 176 ANPTGVTYSREQIKALADVLKKY-DIFVISDEVYSEL 211 (391)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEccccce
Confidence 34778888999999999999776 5888899986644
No 298
>PRK05942 aspartate aminotransferase; Provisional
Probab=41.88 E-value=38 Score=25.40 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=28.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ..+++.||+...+
T Consensus 180 ~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~ 215 (394)
T PRK05942 180 SNPTTATAPREFFEEIVAFARKY-EIMLVHDLCYAEL 215 (394)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHc-CeEEEEeccchhh
Confidence 35778888999999999999765 5788899986544
No 299
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=41.66 E-value=49 Score=27.15 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.1
Q ss_pred CCeEEEEcccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R 81 (113)
.+.+|+|||++.+.++.
T Consensus 377 ~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE 393 (617)
T ss_pred cCCEEEEehhccccCCH
Confidence 47899999999997544
No 300
>KOG1360|consensus
Probab=41.60 E-value=39 Score=26.63 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=33.8
Q ss_pred hhcCCCCCceeec--------hHHHHHHHHHHHHhCCCeEEEEccccccc--cccCCCC
Q psy5205 37 STLGGKLPKGVLL--------GARRVRDLFKAAKDRTPCVVFIDEIDSVG--AKRTNSV 85 (113)
Q Consensus 37 ~~~g~~~~~giLl--------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~--~~R~~~~ 85 (113)
++...+.|+=|-+ +-.-|+++.+.|.+.+ +|-|+||+.+++ +.|+.+-
T Consensus 297 ~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yG-AiTFlDEVHAVGlYG~rGaGv 354 (570)
T KOG1360|consen 297 QSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYG-AITFLDEVHAVGLYGPRGAGV 354 (570)
T ss_pred HhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhC-ceeeeehhhhhccccCCCCCc
Confidence 3444455555555 3345888999997776 999999999987 5676543
No 301
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.21 E-value=1.1e+02 Score=20.50 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.-+-.+..|-...|.++++||-.+-. +...+..+.+++.++
T Consensus 114 ~qrv~la~al~~~p~vlllDEP~~~L--------D~~~~~~l~~~l~~~ 154 (192)
T cd03232 114 RKRLTIGVELAAKPSILFLDEPTSGL--------DSQAAYNIVRFLKKL 154 (192)
T ss_pred hHHHHHHHHHhcCCcEEEEeCCCcCC--------CHHHHHHHHHHHHHH
Confidence 33444666667889999999954332 233344445555554
No 302
>PLN00175 aminotransferase family protein; Provisional
Probab=41.13 E-value=37 Score=25.82 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=28.8
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++.+.|+++ ..+++.||+-.-+
T Consensus 198 NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~l 232 (413)
T PLN00175 198 NPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKL 232 (413)
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CcEEEEecccCcc
Confidence 4678888999999999999766 4889999986644
No 303
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.13 E-value=1.2e+02 Score=21.96 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+..+-+-.+..|-...|.++++||--+-. +...++.+.++|.++-
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gL--------D~~~~~~l~~~l~~l~ 191 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGL--------DPKARIEMMQLFESIH 191 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCC--------CHHHHHHHHHHHHHHH
Confidence 34455556667778899999999953322 3344555556666553
No 304
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=41.12 E-value=34 Score=26.60 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=29.3
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.|+++ ...|+.||+.+.+
T Consensus 202 NPTG~~~s~e~l~~ll~~a~~~-~~~iI~DE~Y~~~ 236 (468)
T PLN02450 202 NPLGTTTTRTELNLLVDFITAK-NIHLISDEIYSGT 236 (468)
T ss_pred CCCCcccCHHHHHHHHHHHHHC-CcEEEEEcccccc
Confidence 4788888999999999999665 5888999998753
No 305
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=41.12 E-value=1.1e+02 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+..+-+-.++.|-...|.++++||--+
T Consensus 168 gGqkqrvalA~aL~~~P~lLlLDEPt~ 194 (305)
T PRK13651 168 GGQKRRVALAGILAMEPDFLVFDEPTA 194 (305)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 444555566777788999999999543
No 306
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=40.94 E-value=1.4e+02 Score=21.59 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
+.+.=|-.-+.|-+..|-+++|||-=|-. +-.++++.|.-|-.+.
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSAL-----------DPElv~EVL~vm~~LA 183 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSAL-----------DPELVGEVLDVMKDLA 183 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccC-----------CHHHHHHHHHHHHHHH
Confidence 45666667777778899999999964332 2356777777776654
No 307
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=40.92 E-value=1.4e+02 Score=21.78 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
..+-+-.+..|-.+.|.++|+||--+ +-+...++.+.+++.++
T Consensus 142 G~~qrl~la~aL~~~P~lllLDEPt~--------gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 142 GMKRRLTLARALVNDPDVLVLDEPTT--------GLDPQARHLMWERLRSL 184 (306)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCc--------CCCHHHHHHHHHHHHHH
Confidence 33444457777788999999999321 12334455566666665
No 308
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=40.80 E-value=24 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=20.7
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..|..-|+++.|.++.++.++..+..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~ 36 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ 36 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc
Confidence 44667889999999999888876654
No 309
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=40.80 E-value=1.1e+02 Score=20.59 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.+++.++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 183 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNL--------DPDLSERILDLLKRL 183 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccC--------CHHHHHHHHHHHHHH
Confidence 34445556666777889999999953322 334455555555555
No 310
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=40.80 E-value=24 Score=22.34 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=12.2
Q ss_pred HHHhCCCeEEEEcc
Q psy5205 60 AAKDRTPCVVFIDE 73 (113)
Q Consensus 60 ~A~~~~p~ilfiDE 73 (113)
+++.+.|.|+|+||
T Consensus 96 e~~~~~P~vv~vd~ 109 (111)
T cd06919 96 EAEGHKPKVVLVDE 109 (111)
T ss_pred HHhcCCCEEEEeCC
Confidence 56689999999997
No 311
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=40.77 E-value=1.1e+02 Score=20.64 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.+++.++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 184 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNL--------DPELSRDIMRLFEEF 184 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcC--------CHHHHHHHHHHHHHH
Confidence 44455556677778899999999943221 333444555555555
No 312
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=40.75 E-value=33 Score=23.56 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=24.7
Q ss_pred HhC-CCeEEEEccccccccc-cCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 62 KDR-TPCVVFIDEIDSVGAK-RTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 62 ~~~-~p~ilfiDEiD~l~~~-R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
.+. .+.+++||-+.++... ..+........+.+.+++..|..+
T Consensus 111 ~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 111 IESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred hhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 455 8999999999988642 111110122334556666666544
No 313
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=40.69 E-value=60 Score=22.37 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=19.2
Q ss_pred HHHHHHHHH-HhCCCeEEEEccccc-cccc
Q psy5205 53 RVRDLFKAA-KDRTPCVVFIDEIDS-VGAK 80 (113)
Q Consensus 53 ~l~~~F~~A-~~~~p~ilfiDEiD~-l~~~ 80 (113)
.+++.|..- ...-|++||||.--. .+++
T Consensus 87 aLH~~f~~~~~~~VP~fL~lDQPSQvYfp~ 116 (193)
T PF12532_consen 87 ALHEFFAKNEKRPVPSFLFLDQPSQVYFPS 116 (193)
T ss_pred HHHHHHHhcCCCCCCCeeeecCCCcCcCCC
Confidence 367777665 445699999998655 3444
No 314
>PRK07682 hypothetical protein; Validated
Probab=40.66 E-value=38 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=29.0
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.|.|..++.+.++++.+.|+++ ..+++.||+..-+.
T Consensus 165 NPtG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~ 200 (378)
T PRK07682 165 NPTGAVLNKSELEEIAVIVEKH-DLIVLSDEIYAELT 200 (378)
T ss_pred CCcCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhcc
Confidence 4678888999999999999765 58889999876543
No 315
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.54 E-value=59 Score=22.94 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=28.2
Q ss_pred CCCeEEEEcccccccc------ccCCCC---CCchhHHHHHHHHHHhcCCCC-CCceEE
Q psy5205 64 RTPCVVFIDEIDSVGA------KRTNSV---LHPYANQTINQLLAEMDGFHQ-NEGVVV 112 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~------~R~~~~---~~~~~~~i~~~lL~~ld~~~~-~~~v~v 112 (113)
+....|+||.++.+.. .|.+.. .......+.+.|+..|..+.+ ..+|++
T Consensus 80 ~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~ 138 (220)
T TIGR01618 80 VKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYA 138 (220)
T ss_pred ccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 4578999999999865 332211 122334566667766666543 334544
No 316
>PRK05957 aspartate aminotransferase; Provisional
Probab=40.45 E-value=44 Score=25.01 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=29.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++.+.++++-+.|+++ -++++.||+..-+
T Consensus 170 ~NPtG~~~~~~~~~~i~~~a~~~-~~~li~De~y~~~ 205 (389)
T PRK05957 170 NNPTGVVYPEALLRAVNQICAEH-GIYHISDEAYEYF 205 (389)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHc-CcEEEEeccchhc
Confidence 45788888999999999999775 4889999986643
No 317
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=40.44 E-value=39 Score=24.93 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++.+.|+++. .+|+.||+..-+
T Consensus 159 NPtG~~~~~~~~~~i~~~a~~~~-~~ii~De~y~~~ 193 (364)
T PRK07865 159 NPTGRVLGVDHLRKVVAWARERG-AVVASDECYLEL 193 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHcC-CEEEEecchhhh
Confidence 35666668889999999997765 788999987744
No 318
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=40.43 E-value=1.1e+02 Score=23.23 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 17 DEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 17 ~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
.+.+.++.+++..++-..+-.+|-..-+ +.+.=|-..+.|-+-.|.+|++||
T Consensus 112 ~~~r~rv~elL~lvqL~~la~ryP~QLS-----GGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 112 AEIRARVEELLRLVQLEGLADRYPAQLS-----GGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred hhHHHHHHHHHHHhcccchhhcCchhcC-----hHHHHHHHHHHHhhcCCCeEeecC
Confidence 3455566665555333333333221111 445555566667778899999999
No 319
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=40.42 E-value=1.1e+02 Score=20.19 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
...-+-.+..|-...|.++++||--+=. +...+..+.+++.++
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~L--------D~~~~~~l~~~l~~~ 144 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGL--------DPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccC--------CHHHHHHHHHHHHHH
Confidence 3444555667777899999999953322 333445555566555
No 320
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=40.28 E-value=1.2e+02 Score=20.60 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +...+..+.++|.++
T Consensus 139 ~G~~qrv~laral~~~p~illlDEPt~~L--------D~~~~~~l~~~l~~~ 182 (218)
T cd03266 139 TGMRQKVAIARALVHDPPVLLLDEPTTGL--------DVMATRALREFIRQL 182 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcCC--------CHHHHHHHHHHHHHH
Confidence 34455556677778899999999953322 334455555666655
No 321
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=40.25 E-value=1.2e+02 Score=20.93 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||-.+-. +......+.+++.++
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~L--------D~~~~~~l~~~l~~~ 187 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAAL--------DPEITAQIVSIIREL 187 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcC--------CHHHHHHHHHHHHHH
Confidence 33444555666767889999999954432 333445555666655
No 322
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=39.83 E-value=27 Score=26.34 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=23.7
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
-|.|-++....|+++.+...+ -+++++||+
T Consensus 156 NPTG~~~~~~~l~~l~~~~~~--~~~vVvDEA 185 (356)
T COG0079 156 NPTGTLLPREELRALLEALPE--GGLVVIDEA 185 (356)
T ss_pred CCCCCCCCHHHHHHHHHhCCC--CcEEEEeCc
Confidence 367777788999998876644 689999995
No 323
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=39.78 E-value=1.1e+02 Score=20.38 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +......+.+++.++
T Consensus 137 ~G~~qr~~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 180 (206)
T TIGR03608 137 GGEQQRVALARAILKDPPLILADEPTGSL--------DPKNRDEVLDLLLEL 180 (206)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcCCC--------CHHHHHHHHHHHHHH
Confidence 33444555666777899999999954422 333445555555555
No 324
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=39.75 E-value=25 Score=25.24 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=14.0
Q ss_pred hCCCeEEEEcccccccc
Q psy5205 63 DRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~ 79 (113)
...++++|+||+..+..
T Consensus 101 ~G~~vll~iDei~r~a~ 117 (249)
T cd01128 101 HGKDVVILLDSITRLAR 117 (249)
T ss_pred CCCCEEEEEECHHHhhh
Confidence 35699999999998754
No 325
>PTZ00377 alanine aminotransferase; Provisional
Probab=39.74 E-value=38 Score=26.31 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=30.1
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ..+|+.||+..-+
T Consensus 228 ~NPTG~~~s~e~~~~i~~~a~~~-~~~iI~De~Y~~l 263 (481)
T PTZ00377 228 GNPTGQVLTRDVMEEIIKFCYEK-GIVLMADEVYQEN 263 (481)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhHhh
Confidence 35889999999999999999776 5788899987643
No 326
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.62 E-value=1.1e+02 Score=21.02 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+...-+-.+..|-...|.++++||-.+
T Consensus 133 ~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 133 GGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 344455566677778999999999543
No 327
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=39.40 E-value=15 Score=28.20 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=10.6
Q ss_pred CeEEEEcccccc
Q psy5205 66 PCVVFIDEIDSV 77 (113)
Q Consensus 66 p~ilfiDEiD~l 77 (113)
=.++||||+|++
T Consensus 203 FD~liIDEVDAF 214 (441)
T COG4098 203 FDLLIIDEVDAF 214 (441)
T ss_pred ccEEEEeccccc
Confidence 468999999997
No 328
>PRK10436 hypothetical protein; Provisional
Probab=39.36 E-value=53 Score=25.86 Aligned_cols=23 Identities=0% Similarity=0.128 Sum_probs=17.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHH
Q psy5205 6 INITFKDVRGVDEAKQELKEIVE 28 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~ 28 (113)
+..++++++..+...+.+++++.
T Consensus 193 ~~~~L~~LG~~~~~~~~l~~~~~ 215 (462)
T PRK10436 193 QALDLETLGMTPAQLAQFRQALQ 215 (462)
T ss_pred CCCCHHHcCcCHHHHHHHHHHHH
Confidence 34688999888888888877653
No 329
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=39.03 E-value=42 Score=25.18 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-.-|.|..++.+.++++.+.|+++ ..+++.||+-.-+
T Consensus 181 p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l 217 (396)
T PRK09257 181 CHNPTGADLTPEQWDELAELLKER-GLIPFLDIAYQGF 217 (396)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccccc
Confidence 356889999999999999999766 4677889875543
No 330
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=39.02 E-value=41 Score=21.95 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=17.2
Q ss_pred eEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 67 CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 67 ~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
.|+|+||+... .-++-++||+.|.
T Consensus 64 ~ill~DEiNra------------ppktQsAlLeam~ 87 (131)
T PF07726_consen 64 NILLADEINRA------------PPKTQSALLEAME 87 (131)
T ss_dssp SEEEEETGGGS-------------HHHHHHHHHHHH
T ss_pred ceeeecccccC------------CHHHHHHHHHHHH
Confidence 59999998433 3467778888876
No 331
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.85 E-value=87 Score=25.09 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=14.7
Q ss_pred CCCCCcccccHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIV 27 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i 27 (113)
..++++++......+.+++++
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~ 254 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLL 254 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHH
Confidence 456777877777777766664
No 332
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=38.83 E-value=73 Score=19.86 Aligned_cols=59 Identities=8% Similarity=0.074 Sum_probs=28.7
Q ss_pred cccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEc
Q psy5205 14 RGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFID 72 (113)
Q Consensus 14 ~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiD 72 (113)
++....-+.+.+.+.. +...+....++..+..+.=--.++++++++...+....|+|-|
T Consensus 7 ~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltD 66 (116)
T TIGR00824 7 SGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVD 66 (116)
T ss_pred EecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 3444555666666666 4443434444433333211134555666655544455666655
No 333
>PRK06107 aspartate aminotransferase; Provisional
Probab=38.79 E-value=48 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
..|.|..++...++++.+.|+++.-+.++.||+.+-
T Consensus 176 ~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~ 211 (402)
T PRK06107 176 SNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDH 211 (402)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 357888889999999999998875688999998764
No 334
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=38.54 E-value=1.3e+02 Score=20.81 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.+++.++
T Consensus 147 ~Gq~qrv~la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 190 (250)
T PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSAL--------DPELVGEVLNTIRQL 190 (250)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 34444555667777899999999953332 333445555555554
No 335
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=38.18 E-value=1.3e+02 Score=20.61 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.+++.++-
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~ 190 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGL--------NPEETEELAELIRELR 190 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHH
Confidence 33444555666777899999999943222 3334455555555553
No 336
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=38.00 E-value=39 Score=26.27 Aligned_cols=13 Identities=46% Similarity=0.871 Sum_probs=10.7
Q ss_pred CCeEEEEcccccc
Q psy5205 65 TPCVVFIDEIDSV 77 (113)
Q Consensus 65 ~p~ilfiDEiD~l 77 (113)
-|-||||||+.-|
T Consensus 291 VpGVLFIDEvHmL 303 (450)
T COG1224 291 VPGVLFIDEVHML 303 (450)
T ss_pred ecceEEEechhhh
Confidence 3999999998764
No 337
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=37.98 E-value=89 Score=26.70 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=12.4
Q ss_pred hCCCeEEEEccccccc
Q psy5205 63 DRTPCVVFIDEIDSVG 78 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~ 78 (113)
...|.++++||.++-+
T Consensus 1109 ~~~~~~~~lDE~~~~l 1124 (1179)
T TIGR02168 1109 VKPAPFCILDEVDAPL 1124 (1179)
T ss_pred cCCCCeEEecCccccc
Confidence 3456899999988765
No 338
>PHA02436 hypothetical protein
Probab=37.98 E-value=29 Score=18.39 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhCC
Q psy5205 50 GARRVRDLFKAAKDRT 65 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~ 65 (113)
++++|.++|+++.+.-
T Consensus 16 GeRkIEEVFeE~YE~~ 31 (52)
T PHA02436 16 GERNIEEVFKEAYESF 31 (52)
T ss_pred chhhHHHHHHHHHHHh
Confidence 7899999999997653
No 339
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=37.96 E-value=44 Score=25.62 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++.+.++++.+.|+++. .+++.||+..-+
T Consensus 201 NPtG~v~~~~~l~~i~~~a~~~~-i~ii~De~Y~~~ 235 (430)
T PLN00145 201 NPCGSVYSYEHLAKIAETARKLG-ILVIADEVYDHL 235 (430)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CEEEEeccchhh
Confidence 46788889999999999997654 888999986643
No 340
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.93 E-value=1.4e+02 Score=21.14 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +...+..+.++|.++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 182 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGL--------DPAGRTQMIAIIRRI 182 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHH
Confidence 34445556677778899999999953322 333444555555554
No 341
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=37.74 E-value=1.3e+02 Score=20.70 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 15 GVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 15 G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
|.+..++.++.+...+.-+..-...|- | --|+...+-++-..| .+.|.++.||+-
T Consensus 8 GD~~A~ravE~aa~~iGgRCIS~S~GN-P---T~lsG~elV~lIk~a-~~DPV~VMfDD~ 62 (180)
T PF14097_consen 8 GDEYAKRAVEIAAKNIGGRCISQSAGN-P---TPLSGEELVELIKQA-PHDPVLVMFDDK 62 (180)
T ss_pred ChHHHHHHHHHHHHHhCcEEEeccCCC-C---CcCCHHHHHHHHHhC-CCCCEEEEEeCC
Confidence 344455555555444444433333332 2 223666666777777 889999999985
No 342
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=37.69 E-value=42 Score=24.09 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=23.7
Q ss_pred Cceeec-----hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 44 PKGVLL-----GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 44 ~~giLl-----~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
-.|||+ -...+..+|+.....-.+|||||+-
T Consensus 152 ~~GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~ 187 (252)
T PF11019_consen 152 YDGILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDN 187 (252)
T ss_pred ecCeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCC
Confidence 467777 3467888888886666799999973
No 343
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=37.54 E-value=1.3e+02 Score=20.39 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
...-+-.+..|-...|.++++||-.+-. +...+..+.++|.++
T Consensus 143 G~~qr~~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~ 185 (221)
T cd03244 143 GQRQLLCLARALLRKSKILVLDEATASV--------DPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccC--------CHHHHHHHHHHHHHh
Confidence 3444455666667889999999954332 333345555555554
No 344
>PRK07568 aspartate aminotransferase; Provisional
Probab=37.53 E-value=47 Score=24.72 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=28.4
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++.+.++++.+.|+++ .++++.||+-.-+
T Consensus 173 NPtG~~~~~~~~~~i~~~~~~~-~~~ii~De~y~~~ 207 (397)
T PRK07568 173 NPTGVVYTKEELEMLAEIAKKH-DLFLISDEVYREF 207 (397)
T ss_pred CCCCccCCHHHHHHHHHHHHHC-CcEEEEeccchhc
Confidence 4678888999999999999765 4889999987644
No 345
>PRK07683 aminotransferase A; Validated
Probab=37.52 E-value=55 Score=24.48 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=28.7
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++.+.|++.. .++++||+-+-+
T Consensus 172 NPtG~~~s~~~~~~l~~~~~~~~-~~ii~De~y~~~ 206 (387)
T PRK07683 172 NPTGVTLSKEELQDIADVLKDKN-IFVLSDEIYSEL 206 (387)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcC-eEEEEecccccc
Confidence 46777778999999999997764 889999997755
No 346
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.49 E-value=1.5e+02 Score=21.13 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +...++.+.++|.++
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 191 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGL--------DPKGRKELMTLFKKL 191 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHH
Confidence 44455566677778899999999953322 334445555555555
No 347
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=37.42 E-value=61 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEcc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDE 73 (113)
.+-|-.+..|-...|.++|+||
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECC
Confidence 3445566677788999999999
No 348
>KOG2680|consensus
Probab=37.16 E-value=23 Score=26.98 Aligned_cols=13 Identities=46% Similarity=0.871 Sum_probs=10.8
Q ss_pred CCeEEEEcccccc
Q psy5205 65 TPCVVFIDEIDSV 77 (113)
Q Consensus 65 ~p~ilfiDEiD~l 77 (113)
-|.||||||+.-|
T Consensus 288 vpGVLFIDEvHML 300 (454)
T KOG2680|consen 288 VPGVLFIDEVHML 300 (454)
T ss_pred ccceEEEeeehhh
Confidence 4999999998754
No 349
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=37.12 E-value=40 Score=26.70 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=19.4
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..++++++|.+...+++.+.+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~ 214 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARV 214 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHH
Confidence 46789999999999998887766
No 350
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=37.11 E-value=49 Score=24.28 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=27.8
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
..|.|..++...++++.+.|+++. .+++.||+-.
T Consensus 146 ~NPtG~~~~~~~~~~l~~~a~~~~-~~ii~De~y~ 179 (350)
T TIGR03537 146 HNPTGATAPRSYLKETIAMCREHG-IILCSDECYT 179 (350)
T ss_pred CCCcCcccCHHHHHHHHHHHHHcC-cEEEEecccc
Confidence 357888889999999999996654 7888999854
No 351
>KOG3062|consensus
Probab=37.10 E-value=1.6e+02 Score=21.51 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccccccccc-CCCCCCchhHHHHHHHHHHhcCCCCCCceEE
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR-TNSVLHPYANQTINQLLAEMDGFHQNEGVVV 112 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R-~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~v 112 (113)
-.+.+++.|+.- ...-+|.++|+ ++++-.+ +.-+.+...+.+-..|-...+.--+...+++
T Consensus 17 rA~~L~~~l~~~-~~K~~v~ii~d-eslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI 78 (281)
T KOG3062|consen 17 RAVELREALKER-GTKQSVRIIDD-ESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVI 78 (281)
T ss_pred HHHHHHHHHHhh-cccceEEEech-hhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEE
Confidence 455677777543 33449999998 5576666 4445566777888888888886434444443
No 352
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=37.01 E-value=24 Score=24.07 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=11.8
Q ss_pred CCeEEEEcccccccc
Q psy5205 65 TPCVVFIDEIDSVGA 79 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~ 79 (113)
.+.+|+|||+|.+..
T Consensus 90 ~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 90 QADLVCLDDVEAIAG 104 (226)
T ss_pred cCCEEEEeChhhhcC
Confidence 346899999998853
No 353
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.66 E-value=1.5e+02 Score=20.68 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
...-+-.+..|-...|.++++||--+-. +...++.+.+++.++
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~ 193 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSAL--------DPISSSEIEETLMEL 193 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccC--------CHHHHHHHHHHHHHH
Confidence 3444455666667899999999954332 333445555566555
No 354
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.57 E-value=1.5e+02 Score=20.72 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +......+.+++.++
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 196 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSAL--------DPISTGKIEELIINL 196 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccc--------CHHHHHHHHHHHHHH
Confidence 44455566677777889999999953332 333444555555555
No 355
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.49 E-value=1.4e+02 Score=20.46 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+...-+-.+..|-...|.++++||--
T Consensus 140 ~G~~~rl~la~aL~~~p~llllDEP~ 165 (236)
T cd03253 140 GGEKQRVAIARAILKNPPILLLDEAT 165 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 34444555666777899999999953
No 356
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=36.35 E-value=91 Score=19.63 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHH--hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 15 GVDEAKQELKEIVEF--LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 15 G~~~~k~~l~~~i~~--~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.++.+.+.+++.+.. +.-...|...|.+.. -..-..+.++.+.+++....+|++.++|.++.
T Consensus 16 s~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~---~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R 79 (148)
T smart00857 16 SLERQLEALRAYAKANGWEVVRIYEDEGVSGK---KADRPGLQRLLADLRAGDIDVLVVYKLDRLGR 79 (148)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEeCCCcCC---CCCCHHHHHHHHHHHcCCCCEEEEeccchhhC
Confidence 456677777775544 222245554443222 12345788888888887778899999998864
No 357
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=36.33 E-value=1.6e+02 Score=20.99 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+.+.=|-..+.|-.+.|.+|+-||
T Consensus 145 GGqqQRVAIARAL~~~P~iilADE 168 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADE 168 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeC
Confidence 556666677778789999999999
No 358
>PLN02656 tyrosine transaminase
Probab=36.29 E-value=47 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++-+.|+++. .+|+.||+-.-+
T Consensus 180 NPtG~~~s~~~~~~i~~~a~~~~-~~ii~De~y~~~ 214 (409)
T PLN02656 180 NPCGNVYSYQHLKKIAETAEKLK-ILVIADEVYGHL 214 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CEEEEehhhhhc
Confidence 46788889999999999997654 889999987644
No 359
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=36.21 E-value=49 Score=24.74 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++...++++.+.|+++ ..+|+.||+-.-+
T Consensus 175 ~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~ 210 (393)
T TIGR03538 175 GNPTGAVLSLDTLKKLIELADQY-GFIIASDECYSEL 210 (393)
T ss_pred CCCcCcccCHHHHHHHHHHHHHC-CEEEEECcchhhc
Confidence 45788888999999999999664 5889999987654
No 360
>PRK06108 aspartate aminotransferase; Provisional
Probab=36.18 E-value=56 Score=24.11 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++.+.|+++ ...+++||+.+-+
T Consensus 168 ~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~ 203 (382)
T PRK06108 168 NNPTGWTASRDDLRAILAHCRRH-GLWIVADEVYERL 203 (382)
T ss_pred CCCCCcccCHHHHHHHHHHHHHC-CcEEEEehhhhhh
Confidence 35678888999999999999654 5889999986654
No 361
>PRK12414 putative aminotransferase; Provisional
Probab=36.16 E-value=57 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
..|.|..++...++++-+.|+++ ..+++.||+-.-
T Consensus 172 ~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y~~ 206 (384)
T PRK12414 172 HNPSATVFSAADLARLAQLTRNT-DIVILSDEVYEH 206 (384)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHC-CeEEEEhhhhhh
Confidence 45678888999999999999765 488889998764
No 362
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=36.09 E-value=1.5e+02 Score=20.81 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-+-.+..|-...|.++++||-
T Consensus 159 ~G~~qrl~laral~~~p~llllDEP 183 (257)
T cd03288 159 VGQRQLFCLARAFVRKSSILIMDEA 183 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3445556677777889999999994
No 363
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=36.06 E-value=34 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCeEEEEccccc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+-.-+....+.++|-|+.+||+-.
T Consensus 206 k~~gmmmaIrsm~PEViIvDEIGt 229 (308)
T COG3854 206 KAEGMMMAIRSMSPEVIIVDEIGT 229 (308)
T ss_pred HHHHHHHHHHhcCCcEEEEecccc
Confidence 334566677899999999999843
No 364
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=35.99 E-value=63 Score=24.60 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 18 EAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 18 ~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
++.+++.+++..+.-.....++.. =|-+.++-|-..+.|-...|.+|++||
T Consensus 112 ~i~~rv~e~L~lV~L~~~~~R~p~-----qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 112 EIKARVEEALELVGLEGFADRKPH-----QLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred HHHHHHHHHHHHcCchhhhhhChh-----hhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 355566666666333332222211 122556677778888888999999998
No 365
>PRK08912 hypothetical protein; Provisional
Probab=35.95 E-value=51 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=27.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
..|.|..++...++++.+.|+++ ...++.||+..
T Consensus 169 ~NPtG~~~s~~~~~~i~~~~~~~-~~~ii~De~y~ 202 (387)
T PRK08912 169 LNPAGKVFPREELALLAEFCQRH-DAVAICDEVWE 202 (387)
T ss_pred CCCcCcccCHHHHHHHHHHHHHC-CeEEEEhhhhh
Confidence 35678888999999999999765 48899999865
No 366
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=35.79 E-value=1.4e+02 Score=20.29 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +...+..+.+++.++
T Consensus 148 ~G~~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 191 (228)
T cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSAL--------DVSVQAQILDLLKKL 191 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCCC--------CHHHHHHHHHHHHHH
Confidence 34444555666767899999999953322 333445555555554
No 367
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=35.70 E-value=1.4e+02 Score=20.21 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.+-+-.+..|-...|.++++||--+=. +...+..+.++|.++
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 178 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGL--------APKIVEEIFEAIREL 178 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccC--------CHHHHHHHHHHHHHH
Confidence 334444555666789999999943221 333445555555555
No 368
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=35.65 E-value=20 Score=21.49 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHH--HhCCCeEEEEcccccccc
Q psy5205 50 GARRVRDLFKAA--KDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 50 ~e~~l~~~F~~A--~~~~p~ilfiDEiD~l~~ 79 (113)
+...+...+... ......+++|||++.+..
T Consensus 86 t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~ 117 (144)
T cd00046 86 TPGRLLDELERLKLSLKKLDLLILDEAHRLLN 117 (144)
T ss_pred CcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh
Confidence 444444443332 134688999999999864
No 369
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=35.56 E-value=39 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-..|.|..++.+.+.++.+.++. -+++++||+..-+
T Consensus 161 p~NPTG~~~~~~~~~~l~~~~~~--~~~iI~Deay~~f 196 (364)
T PRK04781 161 PSNPAGSAIALDQIERALQALQG--KALVVVDEAYGEF 196 (364)
T ss_pred CCCCCCCCcCHHHHHHHHHhCCC--CcEEEEeCcchhh
Confidence 34578888899999999887743 3688999987754
No 370
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=35.56 E-value=1.5e+02 Score=20.42 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +...+..+.++|.++
T Consensus 142 ~G~~qrv~la~al~~~p~llllDEP~~gL--------D~~~~~~l~~~l~~~ 185 (238)
T cd03249 142 GGQKQRIAIARALLRNPKILLLDEATSAL--------DAESEKLVQEALDRA 185 (238)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccC--------CHHHHHHHHHHHHHh
Confidence 33444455667777889999999953322 333445555555555
No 371
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=35.45 E-value=51 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.3
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++.+.|+++ ..+|+.||+..-+
T Consensus 188 NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~ 222 (412)
T PTZ00433 188 NPCGSNFSRKHVEDIIRLCEEL-RLPLISDEIYAGM 222 (412)
T ss_pred CCCCcccCHHHHHHHHHHHHHc-CCeEEEecccccc
Confidence 4688888999999999999665 5788999987643
No 372
>PHA00520 packaging NTPase P4
Probab=35.41 E-value=26 Score=26.18 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.8
Q ss_pred hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEE
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVV 112 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~v 112 (113)
-..-||+.+|-+-.+...-.+...++...|..-+||+-|+.+....+.+|
T Consensus 181 ml~v~VvvvDSlr~vl~~~~GnatsGGISr~~~~~LTdl~~iaas~gc~v 230 (330)
T PHA00520 181 MLDVDVVVVDSLRNVLFELGGNATSGGISRGAYGLLTDLGNIAASRGCRV 230 (330)
T ss_pred HhhceEEEEechHHHHhhhccCCCCCcchHHHHHHHHHHHHHHHHcCcEE
Confidence 34678999999988776665555466678889999999999865544444
No 373
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=35.39 E-value=34 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.-|.|..++.+.++++.+.++. +.+++||+-.
T Consensus 157 ~NPTG~~~~~~~l~~l~~~~~~---~~vivDeay~ 188 (354)
T PRK04635 157 NNPTGTVIDRADIEQLIEMTPD---AIVVVDEAYI 188 (354)
T ss_pred CCCCCccCCHHHHHHHHHhCCC---cEEEEeCchH
Confidence 4577888888888888776542 8899999853
No 374
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=35.38 E-value=1.4e+02 Score=20.09 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +......+.++|.++
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 175 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAI--------DKQGVARLEALLAQH 175 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 34445555667777899999999953221 333444555555554
No 375
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=35.30 E-value=76 Score=21.86 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHhCCCeEEEEcccccccc
Q psy5205 61 AKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 61 A~~~~p~ilfiDEiD~l~~ 79 (113)
+++..|.+++||=+..+..
T Consensus 119 ~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HHhcCCCEEEEcCchhcCC
Confidence 3456899999999998753
No 376
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=35.21 E-value=32 Score=30.09 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~ 80 (113)
|..-+.+-|+.........+|+|++|++..+
T Consensus 188 Ts~FL~k~~e~L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 188 TSQFLSKRFEELSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred eHHHHHhhHHHhcccCCCEEEEccHHHHHhc
Confidence 6667788888887889999999999999864
No 377
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=35.20 E-value=45 Score=26.80 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=18.2
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|+++.|.+...+++.+.+..
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~ 237 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL 237 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH
Confidence 4688999999999988887755
No 378
>PTZ00035 Rad51 protein; Provisional
Probab=35.16 E-value=53 Score=24.63 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=27.6
Q ss_pred HhCCCeEEEEccccccccccCCCC-CCchhHHHHHHHHHHhcCCCCCCce
Q psy5205 62 KDRTPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQNEGV 110 (113)
Q Consensus 62 ~~~~p~ilfiDEiD~l~~~R~~~~-~~~~~~~i~~~lL~~ld~~~~~~~v 110 (113)
.+..+.+|+||=+-+++..--.+. ....-.+.+++++..|-.+....++
T Consensus 210 ~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~v 259 (337)
T PTZ00035 210 AEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNV 259 (337)
T ss_pred hccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 356789999999988874311111 1112234567777766655433333
No 379
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=35.14 E-value=35 Score=23.96 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+.++.+++.| ..|+++++||+-
T Consensus 99 ~~~~~il~~~--~~~sLvllDE~~ 120 (222)
T cd03287 99 SETSHILSNC--TSRSLVILDELG 120 (222)
T ss_pred HHHHHHHHhC--CCCeEEEEccCC
Confidence 3455555544 469999999963
No 380
>KOG1969|consensus
Probab=35.07 E-value=55 Score=27.73 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=11.3
Q ss_pred CCCeEEEEcccccc
Q psy5205 64 RTPCVVFIDEIDSV 77 (113)
Q Consensus 64 ~~p~ilfiDEiD~l 77 (113)
..|.-|++||||.-
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 45889999999853
No 381
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=35.04 E-value=38 Score=25.30 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=25.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
..|.|..++.+.++++.+.++++ .++++||+-.
T Consensus 161 ~NPTG~~~~~~~l~~l~~~~~~~--~~~iiDe~y~ 193 (366)
T PRK01533 161 NNPTGTYVNDRKLTQFIEGISEN--TLIVIDEAYY 193 (366)
T ss_pred CCCCCCCcCHHHHHHHHHhCCCC--CEEEEEccHH
Confidence 45788888999999988877553 4678899743
No 382
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=34.98 E-value=37 Score=24.99 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
-..|.|..++...++++.+.++. ..+|+.||+..-+.
T Consensus 163 p~NPTG~~~s~~~~~~l~~~~~~--~~~iI~De~y~~~~ 199 (357)
T PRK14809 163 PHNPTGSEIPLDEVEALAERTDE--ETLVVVDEAYGEFA 199 (357)
T ss_pred CCCCCCcCCCHHHHHHHHHhCcc--CcEEEEechhhhcc
Confidence 34678888899999998887753 36899999977553
No 383
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=34.64 E-value=1.5e+02 Score=20.33 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +...+..+.++|.++
T Consensus 141 gG~~qrv~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~ 184 (237)
T cd03252 141 GGQRQRIAIARALIHNPRILIFDEATSAL--------DYESEHAIMRNMHDI 184 (237)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccC--------CHHHHHHHHHHHHHh
Confidence 34445555777778899999999953322 333344555555554
No 384
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.53 E-value=1.4e+02 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+..+-+-.+..|-...|.++++||--
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt 178 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPT 178 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 44455556677777899999999953
No 385
>PRK05764 aspartate aminotransferase; Provisional
Probab=34.44 E-value=57 Score=24.24 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=26.5
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.|.|..++...++++-+.|+++. +.+++||+-.
T Consensus 175 NPtG~~~~~~~~~~l~~~a~~~~-~~ii~De~y~ 207 (393)
T PRK05764 175 NPTGAVYSPEELEAIADVAVEHD-IWVLSDEIYE 207 (393)
T ss_pred CCCCcccCHHHHHHHHHHHHHCC-cEEEEecccc
Confidence 35788888899999999997654 8888998754
No 386
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=34.36 E-value=1.2e+02 Score=19.04 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCeEEEEccccccc
Q psy5205 55 RDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 55 ~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.++++.| .+..+||+|+|.+-
T Consensus 62 ~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp HHHHHHC---TTSEEEEECGCCS-
T ss_pred HHHHHHc---CCCEEEECChHHCC
Confidence 3455544 77889999999993
No 387
>PF07903 PaRep2a: PaRep2a protein; InterPro: IPR012490 This is a family of proteins expressed by the crenarchaeon Pyrobaculum aerophilum. The members are highly variable in length and level of conservation. The presence of numerous frameshifts and internal stop codons in multiple alignments are thought to indicate that most family members are no longer functional [].
Probab=34.34 E-value=99 Score=19.80 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=48.5
Q ss_pred ccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeechHHHHHHHH--HHHHhCCCeEEEEcccccccc
Q psy5205 13 VRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLLGARRVRDLF--KAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 13 i~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl~e~~l~~~F--~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+++...+.++|++...+ -...-...++|.+ ...+.||..+|..| +--=..+|.=.|+-|-+++|.
T Consensus 17 ~g~~~~vvkrle~y~~mcqm~~~~~~E~G~k--a~~~~se~aLr~afwwdgeW~GkPmSCFVTekkAvCk 84 (122)
T PF07903_consen 17 MGEELKVVKRLEEYYAMCQMAKAAKAEYGEK--ASPLISEYALRRAFWWDGEWRGKPMSCFVTEKKAVCK 84 (122)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhCcc--ccchhhHHHHHHhhhccCccCCcceeeeeehhHHHhh
Confidence 46677888888888777 4445555678866 55777999999999 332356788899999999875
No 388
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.34 E-value=1.6e+02 Score=20.59 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.+++.++
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 201 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSAL--------DPVSTRKIEELILKL 201 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHH
Confidence 34445555667777899999999954332 333445555556555
No 389
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.20 E-value=1.4e+02 Score=19.59 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.-+-.+..|-...|.++++||--+-. +...+..+.+++.++
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~L--------D~~~~~~l~~~l~~~ 141 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGL--------DPESRREFWELLREL 141 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCC--------CHHHHHHHHHHHHHH
Confidence 33445677778899999999954332 333344455555544
No 390
>KOG0258|consensus
Probab=34.00 E-value=65 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=25.1
Q ss_pred CceeechHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 44 PKGVLLGARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 44 ~~giLl~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
|.|-.+|++++++++..|.+.. -+|+=||+
T Consensus 227 PTGqvls~e~ie~i~~fa~~~~-l~llaDEV 256 (475)
T KOG0258|consen 227 PTGQVLSEENIEGIICFAAEEG-LVLLADEV 256 (475)
T ss_pred ccchhhcHHHHHHHHHHHHHcC-eEEechHH
Confidence 6788889999999999995554 78888887
No 391
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=33.86 E-value=46 Score=20.90 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCeEEEEccccc
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+-++|+.|.+....++++.|++-
T Consensus 8 IPe~~KlA~K~gk~livlpdl~D 30 (106)
T PF09895_consen 8 IPEAFKLALKLGKSLIVLPDLKD 30 (106)
T ss_pred CHHHHHHHHHcCCcEEEeCCHHH
Confidence 56899999999999999998865
No 392
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=33.78 E-value=58 Score=24.18 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.|+++ ...|+.||+-.-+
T Consensus 177 NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~ 211 (385)
T PRK09276 177 NPTGAVADLEFFEEVVDFAKKY-DIIVCHDAAYSEI 211 (385)
T ss_pred CCCCCCCCHHHHHHHHHHHHHC-CcEEEEecchhhe
Confidence 4678888999999999988665 4788899987644
No 393
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=33.75 E-value=33 Score=23.90 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.0
Q ss_pred CCeEEEEccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAK 80 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~ 80 (113)
...+|+||+++.+.++
T Consensus 97 ~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK 112 (219)
T ss_dssp TSSEEEEETGGGGTTH
T ss_pred cCCEEEEecchhhcCc
Confidence 5678999999999643
No 394
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=33.74 E-value=1.4e+02 Score=19.68 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=23.9
Q ss_pred HHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 57 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 57 ~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.+..|-...|.++++||--+-. +...++.+.+++..+
T Consensus 114 ~la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~ 150 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGV--------DVGAKAEIYRLIREL 150 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCC--------CHHHHHHHHHHHHHH
Confidence 4666667789999999943322 334455666666665
No 395
>PRK06855 aminotransferase; Validated
Probab=33.64 E-value=57 Score=24.98 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=29.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++.+.++++.+.|+++ ...|+.||+..-+
T Consensus 181 ~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l 216 (433)
T PRK06855 181 DNPTGAVYPKEILREIVDIAREY-DLFIICDEIYNNI 216 (433)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccccc
Confidence 35788888999999999999765 4788899987654
No 396
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=33.56 E-value=1.6e+02 Score=23.60 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEcccc
Q psy5205 50 GARRVRDLFKAAKDR-TPCVVFIDEID 75 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~-~p~ilfiDEiD 75 (113)
+.+++.++.+.|.+. -|.|.|.|--=
T Consensus 335 ~~~K~~r~i~~a~~~~lPlV~lvDs~G 361 (512)
T TIGR01117 335 SSDKIARFIRFCDAFNIPIVTFVDVPG 361 (512)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCcC
Confidence 567778888888654 58888877543
No 397
>PRK06836 aspartate aminotransferase; Provisional
Probab=33.48 E-value=68 Score=24.06 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=29.6
Q ss_pred CCCceeechHHHHHHHHHHHHhC-----CCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDR-----TPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~-----~p~ilfiDEiD~l~ 78 (113)
..|.|..++.+.++++.+.|++. ....++.||+-.-+
T Consensus 178 ~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~ 219 (394)
T PRK06836 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREI 219 (394)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccc
Confidence 45778888999999999999773 46899999976544
No 398
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=33.23 E-value=68 Score=25.04 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.4
Q ss_pred CCCeEEEEccccccccc
Q psy5205 64 RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~ 80 (113)
..+.+|+|||++.+.++
T Consensus 205 ~~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYK 221 (450)
T ss_pred ccCCEEEEeccccccCC
Confidence 35679999999998653
No 399
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.05 E-value=1.7e+02 Score=20.36 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +...+..+.++|.++
T Consensus 149 ~G~~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 192 (250)
T PRK14245 149 GGQQQRLCIARAMAVSPSVLLMDEPASAL--------DPISTAKVEELIHEL 192 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 44455556677778899999999953322 334455566666665
No 400
>PRK08361 aspartate aminotransferase; Provisional
Probab=32.88 E-value=74 Score=23.76 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++.+.|++. .+.++.||+..-+
T Consensus 176 ~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~ 211 (391)
T PRK08361 176 NNPTGATLDKEVAKAIADIAEDY-NIYILSDEPYEHF 211 (391)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHc-CeEEEEEcccccc
Confidence 34678888888899999999765 4889999987643
No 401
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=32.85 E-value=1.6e+02 Score=21.93 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=50.5
Q ss_pred CCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec-hHHHHHHHHHHHH---hCCCe--EEEEcccccc-cc
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-GARRVRDLFKAAK---DRTPC--VVFIDEIDSV-GA 79 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl-~e~~l~~~F~~A~---~~~p~--ilfiDEiD~l-~~ 79 (113)
.-.|.+.. .++..++|++++..-+....---++++|...+-+ +++-+..+.++.. +.+.. -||+|+|+.- ..
T Consensus 43 r~~Wre~Y-p~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~ 121 (306)
T PF07555_consen 43 RSKWREPY-PEEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSFAILFDDIDGDLWH 121 (306)
T ss_dssp TTTTTS----HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EEEEE-TS-SSC--T
T ss_pred HhhhcccC-CHHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCcccc
Confidence 34676665 4556678888887755555545567777655555 3555555554443 44432 5779999852 22
Q ss_pred c-cCC-CCCCchhHHHHHHHHHHhcCCC
Q psy5205 80 K-RTN-SVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 80 ~-R~~-~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
. +.. ........+++|.+.+++-...
T Consensus 122 ~~~~~~~~~~~~q~~l~n~v~~~l~~~~ 149 (306)
T PF07555_consen 122 CDKDDFNSLAQAQARLLNRVNKELIKKK 149 (306)
T ss_dssp TTTTT-SCHHHHHHHHHHHHHHHTTTCS
T ss_pred ccccccchHHHHHHHHHHHHHHHHhccC
Confidence 1 111 1112344577888877776543
No 402
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=32.70 E-value=39 Score=21.89 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=16.4
Q ss_pred HHHhCCCeEEEEccccccccc
Q psy5205 60 AAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 60 ~A~~~~p~ilfiDEiD~l~~~ 80 (113)
+++...|.++|+||=..+...
T Consensus 97 e~~~~~P~vv~vd~~N~i~~~ 117 (126)
T PRK05449 97 EAKTHKPKVVFVDEDNRIKET 117 (126)
T ss_pred HHhcCCCEEEEECCCCCEEEE
Confidence 456789999999997766543
No 403
>KOG1434|consensus
Probab=32.64 E-value=46 Score=24.68 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHH---hC-CCeEEEEccccccccccCCCC-CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 GARRVRDLFKAAK---DR-TPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ~e~~l~~~F~~A~---~~-~p~ilfiDEiD~l~~~R~~~~-~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++..+..+..... ++ .--++++|-|=+++..--++. +=..-.+.+|+++..|..+..+-++.|+
T Consensus 192 se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVf 260 (335)
T KOG1434|consen 192 SEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVF 260 (335)
T ss_pred hHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 4555554444332 33 345777787777775443333 2245569999999999998877777664
No 404
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=32.63 E-value=1.8e+02 Score=20.42 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+...-+-.+..|-...|.++++||--+
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~ 180 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTG 180 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 344555567777788999999999543
No 405
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=32.45 E-value=2e+02 Score=21.64 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-|-.+..|-...|.++++||-
T Consensus 139 gGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 139 GGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4455555677777788999999994
No 406
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=32.33 E-value=1.6e+02 Score=19.72 Aligned_cols=42 Identities=12% Similarity=-0.017 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.+-+-.+..|-...|.++++||--+=. +......+.+++..+
T Consensus 132 ~~qrv~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 132 QQRRLALARLWLSRAPLWILDEPTTAL--------DKAGVALLAGLLRAH 173 (198)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHH
Confidence 344445566667889999999953322 333455555666555
No 407
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.18 E-value=1.9e+02 Score=20.76 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+...-+-.+..|-...|.++++||--+-. +......+.++|.++.
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gL--------D~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSAL--------DPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHh
Confidence 44555666777778899999999943221 3344455556665553
No 408
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=32.16 E-value=1.4e+02 Score=20.28 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=10.2
Q ss_pred CCCeEEEEcccccc
Q psy5205 64 RTPCVVFIDEIDSV 77 (113)
Q Consensus 64 ~~p~ilfiDEiD~l 77 (113)
..|.++++||-.+-
T Consensus 134 ~~~~illlDEP~~~ 147 (197)
T cd03278 134 RPSPFCVLDEVDAA 147 (197)
T ss_pred CCCCEEEEeCCccc
Confidence 34589999996543
No 409
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.14 E-value=1.6e+02 Score=20.87 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +......+-+++.++
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgL--------D~~~~~~l~~~l~~~ 195 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSAL--------DPIATRRVEELMVEL 195 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 33444455666667899999999943222 333344455555555
No 410
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=32.10 E-value=55 Score=25.80 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=28.8
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.|+++ ...|+.||+-+..
T Consensus 210 NPTG~~~s~e~l~~L~~~a~~~-~i~lI~DEiY~~~ 244 (496)
T PLN02376 210 NPLGTMLDKDTLTNLVRFVTRK-NIHLVVDEIYAAT 244 (496)
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCcccc
Confidence 4788888999999999999665 5888999987753
No 411
>PRK07550 hypothetical protein; Provisional
Probab=32.06 E-value=69 Score=23.84 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=28.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++.+.++++.+.|+++ ...++.||+.+-+
T Consensus 174 NPtG~~~~~~~~~~i~~~~~~~-~~~iI~Dd~y~~~ 208 (386)
T PRK07550 174 NPTGVVYPPELLHELYDLARRH-GIALILDETYRDF 208 (386)
T ss_pred CCCCcccCHHHHHHHHHHHHHc-CeEEEEeccchhh
Confidence 4678888999999999999766 4788999986544
No 412
>PHA00012 I assembly protein
Probab=32.05 E-value=59 Score=24.83 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=18.6
Q ss_pred CCCeEEEEccccccccccCCCC
Q psy5205 64 RTPCVVFIDEIDSVGAKRTNSV 85 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~R~~~~ 85 (113)
..-+++++||+-..++.|+.+.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~s 101 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWND 101 (361)
T ss_pred CCCcEEEEECcccccCCCCcCc
Confidence 3568999999999999998653
No 413
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=31.91 E-value=2e+02 Score=21.56 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-|-.+..|-...|.++++||-
T Consensus 139 gGq~QRvalArAL~~~P~llLLDEP 163 (353)
T PRK10851 139 GGQKQRVALARALAVEPQILLLDEP 163 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3445555666777788999999994
No 414
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=31.80 E-value=1.9e+02 Score=20.49 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...++.+.++|.++
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~L~~l 209 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSAL--------DPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHH
Confidence 44455556677778899999999953322 333445555556555
No 415
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=31.80 E-value=54 Score=25.40 Aligned_cols=16 Identities=50% Similarity=0.615 Sum_probs=13.7
Q ss_pred hCCCeEEEEccccccc
Q psy5205 63 DRTPCVVFIDEIDSVG 78 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~ 78 (113)
...|-|++|||+|-..
T Consensus 293 ~~tpgivLiDeIdlfl 308 (440)
T COG3950 293 KLTPGIVLIDEIDLFL 308 (440)
T ss_pred cCCCceEEeehhhhhc
Confidence 4469999999999886
No 416
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=31.62 E-value=60 Score=22.91 Aligned_cols=22 Identities=27% Similarity=0.609 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
-+.++.+++.+. ..++++|||+
T Consensus 110 ~~~~~~il~~~~--~~sLvliDE~ 131 (235)
T PF00488_consen 110 MKRLSSILRNAT--EKSLVLIDEL 131 (235)
T ss_dssp HHHHHHHHHH----TTEEEEEEST
T ss_pred HHHHHhhhhhcc--cceeeecccc
Confidence 356777776653 5789999996
No 417
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=31.62 E-value=1.6e+02 Score=20.74 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +...++.+.+++.++
T Consensus 150 gG~~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~~~~~l~~l 193 (265)
T PRK10575 150 GGERQRAWIAMLVAQDSRCLLLDEPTSAL--------DIAHQVDVLALVHRL 193 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHH
Confidence 44555666777778899999999953322 333445555555554
No 418
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=31.55 E-value=1.5e+02 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=19.4
Q ss_pred HHHHHHHHHH-------hCCCeEEEEcccccccc
Q psy5205 53 RVRDLFKAAK-------DRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 53 ~l~~~F~~A~-------~~~p~ilfiDEiD~l~~ 79 (113)
.++.+|+..+ ..++.+|+||+++.|..
T Consensus 116 ~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~ 149 (249)
T PF09807_consen 116 SLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLS 149 (249)
T ss_pred hHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHH
Confidence 3555655443 45689999999999976
No 419
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=31.48 E-value=1.8e+02 Score=20.12 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.+..|-...|.++++||-
T Consensus 148 ~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 148 GGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4445555667777889999999995
No 420
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=31.32 E-value=1e+02 Score=23.47 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=33.6
Q ss_pred hhhHhhcCCCCCceeec----------hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 33 PEKFSTLGGKLPKGVLL----------GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 33 ~~~~~~~g~~~~~giLl----------~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+-.|.-+-++..||+|. +++.++++|.+..+..|-|=++++
T Consensus 231 ~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~ 281 (349)
T COG0002 231 PVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPE 281 (349)
T ss_pred ceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecC
Confidence 34455555677899988 789999999999999998888886
No 421
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.20 E-value=1.8e+02 Score=20.11 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +...+..+.++|.++
T Consensus 138 ~G~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~L~~~ 181 (242)
T cd03295 138 GGQQQRVGVARALAADPPLLLMDEPFGAL--------DPITRDQLQEEFKRL 181 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccC--------CHHHHHHHHHHHHHH
Confidence 33444555667777899999999953222 333445555555555
No 422
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=31.12 E-value=42 Score=21.44 Aligned_cols=15 Identities=53% Similarity=0.809 Sum_probs=9.6
Q ss_pred HHHhCCCeEEEEccc
Q psy5205 60 AAKDRTPCVVFIDEI 74 (113)
Q Consensus 60 ~A~~~~p~ilfiDEi 74 (113)
++....|.++|+||=
T Consensus 97 e~~~~~P~vv~vd~~ 111 (116)
T PF02261_consen 97 EAKNHKPKVVFVDEK 111 (116)
T ss_dssp HHHH---EEEEEETT
T ss_pred HHhhCCCEEEEECCC
Confidence 456789999999983
No 423
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=31.05 E-value=2e+02 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-|-.+..|-...|.++++||-
T Consensus 152 gGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3445555666666778999999984
No 424
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=31.03 E-value=2.1e+02 Score=20.77 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.+..|-...|.++++||-
T Consensus 136 ~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 136 KGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4445556678888899999999994
No 425
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=30.97 E-value=1.7e+02 Score=19.86 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
...-+-.+..|-...|.++++||--+=. +...+..+.++|.++
T Consensus 128 G~~~rv~laral~~~p~llllDEP~~~L--------D~~~~~~l~~~L~~~ 170 (223)
T TIGR03740 128 GMKQRLGIAIALLNHPKLLILDEPTNGL--------DPIGIQELRELIRSF 170 (223)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccCC--------CHHHHHHHHHHHHHH
Confidence 3444455677777899999999943222 334455566666655
No 426
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=30.96 E-value=1.9e+02 Score=20.17 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-+-.+..|-...|.++++||-
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3445556667777889999999995
No 427
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=30.95 E-value=63 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.-|.|..++...++++.+.|+++ .+.++.||+-.-+
T Consensus 151 ~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~Y~~~ 186 (354)
T PRK06358 151 NNPTGQLISKEEMKKILDKCEKR-NIYLIIDEAFMDF 186 (354)
T ss_pred CCCCCCccCHHHHHHHHHHHHhc-CCEEEEeCccccc
Confidence 35778888999999999998655 5788999987544
No 428
>KOG0326|consensus
Probab=30.95 E-value=50 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=21.0
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
..+++++||+|.+.. .....++.+++..+.
T Consensus 227 ~c~~lV~DEADKlLs--------~~F~~~~e~li~~lP 256 (459)
T KOG0326|consen 227 DCVILVMDEADKLLS--------VDFQPIVEKLISFLP 256 (459)
T ss_pred hceEEEechhhhhhc--------hhhhhHHHHHHHhCC
Confidence 356888999999973 344566677766554
No 429
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=30.83 E-value=1.7e+02 Score=19.65 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEccc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
.+-+-.+..|-...|.++++||-
T Consensus 131 ~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 131 MKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred HHHHHHHHHHHhcCCCEEEECCC
Confidence 34444566666788999999994
No 430
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.79 E-value=1.7e+02 Score=19.74 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.+..|-...|.++++||-
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4445556677777889999999994
No 431
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=30.70 E-value=1.7e+02 Score=20.71 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.++|.++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~ 195 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASL--------DMSMRSQLINLMLEL 195 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccC--------CHHHHHHHHHHHHHH
Confidence 33444555666777899999999953322 333444555555554
No 432
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=30.69 E-value=54 Score=22.28 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCeEEEEccc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEi 74 (113)
.+.+..+.|-...|.++++||+
T Consensus 62 ~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 62 SFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred CHHHHHHHHhcCCcCEEEEcCC
Confidence 3555666676788999999998
No 433
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=30.67 E-value=2e+02 Score=21.57 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-|-.+..|-...|.++++||-
T Consensus 137 gGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 137 GGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3444455566666778999999994
No 434
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.62 E-value=1.7e+02 Score=21.26 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+..+=|-.++.|-...|-++++||
T Consensus 133 GGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 133 GGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEcC
Confidence 344566677777788899999998
No 435
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=30.62 E-value=74 Score=25.49 Aligned_cols=36 Identities=8% Similarity=0.229 Sum_probs=28.8
Q ss_pred CCceeechHHHHHHHHHHHHhCC-CeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRT-PCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~-p~ilfiDEiD~l~ 78 (113)
-|.|..++.+.++++.+.|+++. ..+|+.||+-.-+
T Consensus 251 NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f 287 (521)
T TIGR03801 251 NPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTF 287 (521)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhh
Confidence 46788889999999999998864 5678899986533
No 436
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.60 E-value=1.9e+02 Score=20.14 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
...-+-.+..|-...|.++++||--+-. +...+..+-++|..+.
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~ 196 (251)
T PRK14244 153 GQQQRLCIARAIAVKPTMLLMDEPCSAL--------DPVATNVIENLIQELK 196 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHh
Confidence 3344445566667789999999943222 2233455556665553
No 437
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=30.53 E-value=1.9e+02 Score=20.09 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +......+.++|.++
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 194 (252)
T PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSAL--------DPISAGKIEETLLGL 194 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccc--------CHHHHHHHHHHHHHH
Confidence 33444555666667899999999943322 334445555666665
No 438
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=30.47 E-value=2.2e+02 Score=22.08 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+ +-+...++.+.++|.++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~--------gLD~~~~~~l~~~L~~l 447 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQ--------GLDPLNRQLVRRFVDVL 447 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccc--------cCCHHHHHHHHHHHHHH
Confidence 444555567777788999999999422 11334455555666555
No 439
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=30.31 E-value=2e+02 Score=20.32 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-+-.+..|-...|.++++||-
T Consensus 154 gGq~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4445556677777789999999994
No 440
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=30.28 E-value=44 Score=20.58 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH-hcC-hhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEc
Q psy5205 18 EAKQELKEIVEF-LKN-PEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFID 72 (113)
Q Consensus 18 ~~k~~l~~~i~~-~~~-~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiD 72 (113)
..-+.+.+.+.. +.. ++.+..+++.+..++=-..+++++..+........++|.|
T Consensus 9 ~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~D 65 (116)
T PF03610_consen 9 SLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTD 65 (116)
T ss_dssp THHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEee
Confidence 444556666666 444 4455555544443322234566666655544555666655
No 441
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.25 E-value=2e+02 Score=20.22 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +...+..+.+++.++
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~l 200 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSAL--------DPISTARIEDLIMNL 200 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccc--------CHHHHHHHHHHHHHH
Confidence 34444555666667889999999953322 333444555555555
No 442
>PRK08175 aminotransferase; Validated
Probab=30.24 E-value=71 Score=23.93 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=28.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
.-|.|..++.+.++++.+.|+++ ...++.||+..-
T Consensus 174 ~NPtG~~~~~~~~~~i~~~a~~~-~i~ii~De~y~~ 208 (395)
T PRK08175 174 SNPTAQCVELEFFEKVVALAKRY-DVLVVHDLAYAD 208 (395)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchHh
Confidence 34788888999999999999765 478889998754
No 443
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=30.22 E-value=1.8e+02 Score=20.37 Aligned_cols=44 Identities=20% Similarity=0.100 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...++.+.++|.++
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~L--------D~~~~~~l~~~L~~~ 186 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDL--------DVVAQARILDLLESI 186 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccc--------CHHHHHHHHHHHHHH
Confidence 34444555667777899999999953322 333444555555544
No 444
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.17 E-value=2.2e+02 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.+..|-...|.++++||-
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEP 203 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEP 203 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECC
Confidence 4455566677777889999999994
No 445
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=2.2e+02 Score=20.73 Aligned_cols=59 Identities=27% Similarity=0.259 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 17 DEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 17 ~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.+..+++++....+.-...|.+-.+. -|.-=+|++=.++++.+ ...|.+.++||.||=.
T Consensus 117 ~~~~~~~~e~~~~l~~~~~~l~R~vN--~GFSGGEkKR~EilQ~~-~lePkl~ILDE~DSGL 175 (251)
T COG0396 117 PEFIKELKEKAELLGLDEEFLERYVN--EGFSGGEKKRNEILQLL-LLEPKLAILDEPDSGL 175 (251)
T ss_pred HHHHHHHHHHHHHcCCCHHHhhcccC--CCcCcchHHHHHHHHHH-hcCCCEEEecCCCcCc
Confidence 34555666666664433344322211 11111699988999877 9999999999998743
No 446
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.11 E-value=1.9e+02 Score=20.06 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +...+..+.+++.++
T Consensus 149 ~Gq~qr~~la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~ 192 (250)
T PRK14262 149 GGQQQRLCIARALAVEPEVILLDEPTSAL--------DPIATQRIEKLLEEL 192 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccc--------CHHHHHHHHHHHHHH
Confidence 33444555666667889999999953322 333445556666655
No 447
>PRK08363 alanine aminotransferase; Validated
Probab=30.08 E-value=79 Score=23.67 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=27.4
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
.|.|..++...++++.+.|+++ ...++.||+-.-
T Consensus 177 NPtG~~~~~~~~~~l~~~a~~~-~~~li~Deay~~ 210 (398)
T PRK08363 177 NPTGALYEKKTLKEILDIAGEH-DLPVISDEIYDL 210 (398)
T ss_pred CCCCcCcCHHHHHHHHHHHHHc-CeEEEEhhhhhh
Confidence 4678888989999999999765 488899997553
No 448
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=30.04 E-value=1.7e+02 Score=19.56 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+=. +...+..+.++|.++
T Consensus 129 ~G~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 172 (205)
T cd03226 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGL--------DYKNMERVGELIREL 172 (205)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 34444555666667889999999943221 334445555566555
No 449
>PRK01002 nickel responsive regulator; Provisional
Probab=29.96 E-value=15 Score=24.05 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=24.7
Q ss_pred EccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 71 IDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 71 iDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
++|+|.+...++-.+.+...+..+..++.+-..
T Consensus 16 l~~lD~~~~~~g~~sRSe~Ir~air~~l~~~~~ 48 (141)
T PRK01002 16 LGEFDEIIEERGYASRSEGIRDAIRDYIIKYKW 48 (141)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Confidence 578899998887555477788888888876443
No 450
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.95 E-value=1.9e+02 Score=20.04 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +......+.++|.++
T Consensus 149 ~Gq~qrv~laral~~~p~llllDEP~~gL--------D~~~~~~l~~~l~~~ 192 (250)
T PRK14266 149 GGQQQRLCIARTIAVSPEVILMDEPCSAL--------DPISTTKIEDLIHKL 192 (250)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccC--------CHHHHHHHHHHHHHH
Confidence 44455556667777899999999943322 333345555566555
No 451
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=29.88 E-value=1.3e+02 Score=22.50 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHH----hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 50 GARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 50 ~e~~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
+-..+|++-+.+. ...--|++||++|.+- ...-|.||.-|+.-..
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~ 137 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEEPPE 137 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcCCCC
Confidence 3445666555542 3445699999999883 3567999999997543
No 452
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=29.83 E-value=1.9e+02 Score=19.94 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...+..+.+++..+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 183 (241)
T PRK10895 140 GGERRRVEIARALAANPKFILLDEPFAGV--------DPISVIDIKRIIEHL 183 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHH
Confidence 33444556677778899999999943322 333344455555555
No 453
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=29.77 E-value=71 Score=23.29 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.|.|..++...++++.+.|+++ ...+++||+-.
T Consensus 136 NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~ 168 (330)
T TIGR01140 136 NPTGRLIPPETLLALAARLRAR-GGWLVVDEAFI 168 (330)
T ss_pred CCCCCCCCHHHHHHHHHHhHhc-CCEEEEECccc
Confidence 3677777999999999999655 58899999865
No 454
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.69 E-value=1.7e+02 Score=19.46 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+...-+-.+..|-...|.++++||--+
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 334445556666678899999999543
No 455
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=29.52 E-value=73 Score=23.16 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+.++=+-..++|-+..|.|+++||=
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEP 165 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEP 165 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCC
Confidence 4455666778888999999999993
No 456
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=29.46 E-value=2e+02 Score=20.02 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
..+-+-.+..|-...|.++++||--+=. +...+..+.+++.++
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 195 (253)
T PRK14242 153 GQQQRLCIARALAVEPEVLLMDEPASAL--------DPIATQKIEELIHEL 195 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHH
Confidence 3444445666667889999999953322 333445555555555
No 457
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=29.39 E-value=58 Score=23.89 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=24.6
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
..|.|..++.+.++++.+.+ ..++++||+-.
T Consensus 163 ~NPtG~~~~~~~~~~i~~~~----~~~ii~De~y~ 193 (356)
T PRK04870 163 NNPTGNLFDDADVERIIEAA----PGLVVVDEAYQ 193 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHC----CCEEEEECCch
Confidence 45788888999999988776 56788999754
No 458
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=29.20 E-value=2.6e+02 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-|-.++.|-...|.++++||-
T Consensus 171 gGq~qrv~iA~al~~~p~lllLDEP 195 (520)
T TIGR03269 171 GGEKQRVVLARQLAKEPFLFLADEP 195 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCC
Confidence 5556666777887889999999994
No 459
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=29.14 E-value=24 Score=22.54 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHH--HhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 50 GARRVRDLFKAA--KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 ~e~~l~~~F~~A--~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
+...+...+... .-.....++|||+|.+... .....+..++..+...
T Consensus 102 T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~--------~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 102 TPEQLLDLISNGKINISRLSLIVIDEAHHLSDE--------TFRAMLKSILRRLKRF 150 (169)
T ss_dssp EHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT--------THHHHHHHHHHHSHTT
T ss_pred CcchhhccccccccccccceeeccCcccccccc--------cHHHHHHHHHHHhcCC
Confidence 667766666541 1133788999999999763 1123555666665433
No 460
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=29.11 E-value=2.4e+02 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.+..|-...|.++++||-
T Consensus 136 gGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 136 GGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3444455566666778889999884
No 461
>KOG0061|consensus
Probab=29.10 E-value=3.1e+02 Score=22.47 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=10.0
Q ss_pred hCCCeEEEEcc
Q psy5205 63 DRTPCVVFIDE 73 (113)
Q Consensus 63 ~~~p~ilfiDE 73 (113)
-+.|+|+|+||
T Consensus 186 l~~P~iLflDE 196 (613)
T KOG0061|consen 186 LTDPSILFLDE 196 (613)
T ss_pred HcCCCEEEecC
Confidence 47899999999
No 462
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=29.05 E-value=1.4e+02 Score=23.59 Aligned_cols=23 Identities=4% Similarity=0.231 Sum_probs=17.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHH
Q psy5205 6 INITFKDVRGVDEAKQELKEIVE 28 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~ 28 (113)
...++++++..++..+.+++++.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~ 239 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR 239 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh
Confidence 45688899888888888877653
No 463
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=29.03 E-value=17 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.3
Q ss_pred EccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 71 IDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 71 iDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
++|+|.+..+|+-.+.+...+..+.++|.+-+....
T Consensus 16 l~elD~~i~~rg~~sRSE~IrdAir~yl~e~~~~~~ 51 (136)
T COG0864 16 LEELDELIEERGYSSRSELIRDALREYLEEYRWLED 51 (136)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 578899998888776677888888888888666543
No 464
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=28.95 E-value=71 Score=23.33 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
++.++.++|..|++++..|-++.+.++-.
T Consensus 84 GSpRL~QIF~sa~~~GrfvrLyE~~~~~~ 112 (260)
T PF11079_consen 84 GSPRLHQIFQSAKKLGRFVRLYEQPPTAG 112 (260)
T ss_pred CChhHHHHHHHHHhcCCEEEEEeccCCCC
Confidence 78899999999999999999999987653
No 465
>KOG1942|consensus
Probab=28.91 E-value=26 Score=26.62 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=12.0
Q ss_pred hCCCeEEEEcccccc
Q psy5205 63 DRTPCVVFIDEIDSV 77 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l 77 (113)
+.-|.+|||||+.-+
T Consensus 294 ElvPGVLFIDEVhML 308 (456)
T KOG1942|consen 294 ELVPGVLFIDEVHML 308 (456)
T ss_pred hhcCcceEeeehhhh
Confidence 345999999998654
No 466
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=28.79 E-value=2.1e+02 Score=20.09 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+=. +......+.++|.++
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~L~~~ 202 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSAL--------DPISTGRIEELITEL 202 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccC--------CHHHHHHHHHHHHHH
Confidence 34445556667777899999999953322 333445555566555
No 467
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=28.77 E-value=69 Score=24.17 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHhCCCeEEEEccccccccccCCCCCC-chhHHHHHHHHHHhcCCCCCCceEE
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGFHQNEGVVV 112 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~~R~~~~~~-~~~~~i~~~lL~~ld~~~~~~~v~v 112 (113)
.......+.+|+||=+-+++..--.+... ..-.+.+++++..|..+....++.|
T Consensus 212 ~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaV 266 (342)
T PLN03186 212 SMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAV 266 (342)
T ss_pred HHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 33456689999999999887531111111 1122456777777766544444433
No 468
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=28.71 E-value=2e+02 Score=19.78 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +......+.++|.++
T Consensus 147 ~G~~qrl~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 190 (243)
T TIGR01978 147 GGEKKRNEILQMALLEPKLAILDEIDSGL--------DIDALKIVAEGINRL 190 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccC--------CHHHHHHHHHHHHHH
Confidence 34445556677777899999999943221 333445555555555
No 469
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=28.71 E-value=2.5e+02 Score=21.11 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-|-.+..|-...|.++++||-
T Consensus 137 gGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 137 GGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3444555566666778888888884
No 470
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=28.66 E-value=82 Score=16.82 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
++++|+..-...---|=.+|+-.++..-............+..++..+|.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 51 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDT 51 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 55666666555555555555555554333222133455667777777774
No 471
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=28.61 E-value=45 Score=26.03 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=13.5
Q ss_pred CCCeEEEEccccccccc
Q psy5205 64 RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~ 80 (113)
..+.+|+|||++.+.++
T Consensus 201 ~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 201 RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ccCCEEEEcchhhhcCC
Confidence 35779999999998653
No 472
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=28.60 E-value=1.1e+02 Score=22.11 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=25.0
Q ss_pred HHHHHH--hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 57 LFKAAK--DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 57 ~F~~A~--~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
+.+.|| -..|-++++||= +. +-.-.++.++...+..++...
T Consensus 144 MLAiaRALm~~PklLLLDEP-s~----------GLaP~iv~~I~~~i~~l~~~~ 186 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEP-SE----------GLAPKIVEEIFEAIKELRKEG 186 (237)
T ss_pred HHHHHHHHhcCCCEEEecCC-cc----------CcCHHHHHHHHHHHHHHHHcC
Confidence 444555 468999999992 11 123456666666666665443
No 473
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.47 E-value=2.1e+02 Score=19.92 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+-+-.+..|-...|.++++||--+-. +...+..+.++|.++
T Consensus 151 ~Gq~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~ 194 (252)
T PRK14255 151 GGQQQRVCIARVLAVKPDVILLDEPTSAL--------DPISSTQIENMLLEL 194 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccC--------CHHHHHHHHHHHHHH
Confidence 34455556677778899999999953322 333445555555555
No 474
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=28.42 E-value=55 Score=26.50 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=17.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+...+++.+.+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~ 343 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQ 343 (638)
T ss_pred cccccceEECCHHHHHHHHHHHH
Confidence 45789999998888887776655
No 475
>PRK09082 methionine aminotransferase; Validated
Probab=28.39 E-value=85 Score=23.41 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++-+.|+++. ..++.||+..-+
T Consensus 174 NPtG~~~~~~~~~~i~~~a~~~~-i~li~De~y~~~ 208 (386)
T PRK09082 174 NPSGTVWSAADMRALWQLIAGTD-IYVLSDEVYEHI 208 (386)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCC-EEEEEehhhhhh
Confidence 46788778899999999997654 888999987543
No 476
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=28.39 E-value=2.2e+02 Score=20.20 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...++.+.++|..+
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~L--------D~~~~~~l~~~L~~~ 188 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTGV--------DVKTEARIISLLREL 188 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 34445555666767889999999943222 333445555555555
No 477
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=28.31 E-value=2.6e+02 Score=21.91 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+..+-+-.+..|-...|.++++|| -.++-+......+.+++.++- .....++++
T Consensus 412 gGq~qrv~lAral~~~p~lLlLDE--------Pt~~LD~~~~~~l~~~l~~l~--~~g~tvi~v 465 (510)
T PRK09700 412 GGNQQKVLISKWLCCCPEVIIFDE--------PTRGIDVGAKAEIYKVMRQLA--DDGKVILMV 465 (510)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECC--------CCCCcCHHHHHHHHHHHHHHH--HCCCEEEEE
No 478
>KOG0964|consensus
Probab=28.26 E-value=58 Score=28.43 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
.|.-+|+.-+-.....-+|||||+-... -.+..|+.++.+|.
T Consensus 1107 ALaLIFaIQrcDPAPFYlfDEIDAaLDa--------QyR~aVa~lIkelS 1148 (1200)
T KOG0964|consen 1107 ALALIFAIQRCDPAPFYLFDEIDAALDA--------QYRTAVADLIKELS 1148 (1200)
T ss_pred HHHHHHHHHhcCCcchhhHhHHhhhccH--------HHHHHHHHHHHHHh
Confidence 4667787664444446679999997632 34566677777665
No 479
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=28.22 E-value=2e+02 Score=19.72 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+..+-+-.+..|-...|.++++||--
T Consensus 128 ~G~~qrv~laral~~~p~vllLDEPt 153 (230)
T TIGR02770 128 GGMLQRVMIALALLLEPPFLIADEPT 153 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 33444555666667889999999953
No 480
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=28.08 E-value=69 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=26.0
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++.+.+.++.+.++ ..++++.||+-.-+
T Consensus 161 ~NPtG~~~~~~~l~~~~~~~~--~~~~ii~De~y~~~ 195 (359)
T PRK03158 161 NNPTGTYVNHEELLSFLESVP--SHVLVVLDEAYYEY 195 (359)
T ss_pred CCCCCCCCCHHHHHHHHHhCC--CCcEEEEECchHhh
Confidence 457888888888888776653 36899999986543
No 481
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=28.04 E-value=51 Score=23.50 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=10.7
Q ss_pred CCeEEEEcccccc
Q psy5205 65 TPCVVFIDEIDSV 77 (113)
Q Consensus 65 ~p~ilfiDEiD~l 77 (113)
.+.++++||+|.+
T Consensus 105 ~g~~lllDEi~r~ 117 (262)
T TIGR02640 105 EGFTLVYDEFTRS 117 (262)
T ss_pred cCCEEEEcchhhC
Confidence 3579999999886
No 482
>PF05931 AgrD: Staphylococcal AgrD protein; InterPro: IPR009229 This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr [].
Probab=28.02 E-value=74 Score=16.77 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=14.2
Q ss_pred HHHHHHHHH---hCCCeEEEEccc
Q psy5205 54 VRDLFKAAK---DRTPCVVFIDEI 74 (113)
Q Consensus 54 l~~~F~~A~---~~~p~ilfiDEi 74 (113)
+..+|+..- ...||..++||-
T Consensus 11 ~t~~f~~IG~~a~~~~C~~~~DEp 34 (45)
T PF05931_consen 11 FTKIFEFIGNVAGYNPCSGYFDEP 34 (45)
T ss_pred HHHHHHHHHhhhccCccceeccCC
Confidence 345555443 456999999994
No 483
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.98 E-value=2.1e+02 Score=19.87 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+...-+-.+..|-...|.++++||--+-. +...++.+-++|.++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~L~~~ 199 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGL--------NPKETKELDELIAEL 199 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCC--------CHHHHHHHHHHHHHH
Confidence 34445555666777899999999943222 333445555555554
No 484
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=27.93 E-value=87 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHh----CCCeEEEEcccccc
Q psy5205 51 ARRVRDLFKAAKD----RTPCVVFIDEIDSV 77 (113)
Q Consensus 51 e~~l~~~F~~A~~----~~p~ilfiDEiD~l 77 (113)
.+..++.++.|++ ....+|++||+=..
T Consensus 79 ~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A 109 (173)
T TIGR00708 79 TAIAKAAWQHAKEMLADPELDLVLLDELTYA 109 (173)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEehhhHHH
Confidence 3557778887775 56789999998543
No 485
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=27.92 E-value=1.8e+02 Score=18.98 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
..+-+-.+..|-...|.++++||--
T Consensus 95 G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 95 GEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCc
Confidence 3444555666777899999999953
No 486
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=27.84 E-value=2.2e+02 Score=19.95 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+...-+-.+..|-...|.++++||--+= -+......+.++|.++.
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~--------LD~~~~~~l~~~l~~l~ 199 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSA--------LDPELVGEVLRIMQQLA 199 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc--------CCHHHHHHHHHHHHHHH
Confidence 4445555667777889999999994222 13344555666666653
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.83 E-value=87 Score=21.57 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+...-+-.+..|-...|.++++||-
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCC
Confidence 3445555667777789999999994
No 488
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=27.76 E-value=2.7e+02 Score=21.00 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+.-+-|-+.+.|-...|.+|+-||-
T Consensus 156 GGMrQRV~IAmala~~P~LlIADEP 180 (316)
T COG0444 156 GGMRQRVMIAMALALNPKLLIADEP 180 (316)
T ss_pred CcHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3346677888999999999999993
No 489
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.73 E-value=92 Score=20.37 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=14.6
Q ss_pred HHHHHHHhCCCeEEEEccc
Q psy5205 56 DLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 56 ~~F~~A~~~~p~ilfiDEi 74 (113)
-.+..|-...|.++++||-
T Consensus 105 l~la~al~~~p~llllDEP 123 (171)
T cd03228 105 IAIARALLRDPPILILDEA 123 (171)
T ss_pred HHHHHHHhcCCCEEEEECC
Confidence 3456666788999999994
No 490
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.70 E-value=91 Score=21.09 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.+..|-...|.++++||-
T Consensus 133 gG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 133 GGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3344445566666788999999994
No 491
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.55 E-value=2.1e+02 Score=22.48 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=9.8
Q ss_pred CCCeEEEEccc
Q psy5205 64 RTPCVVFIDEI 74 (113)
Q Consensus 64 ~~p~ilfiDEi 74 (113)
..|.++++||.
T Consensus 495 ~~~~~lilDEp 505 (562)
T PHA02562 495 VDTNLLILDEV 505 (562)
T ss_pred CCcCeEEEecc
Confidence 47999999996
No 492
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.54 E-value=2.2e+02 Score=20.04 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+...-+-.+..|-...|.++++||--+=. +...+..+.++|.++.
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~ 211 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASAL--------DPISNAKIEELITELK 211 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCccc--------CHHHHHHHHHHHHHHh
Confidence 34444555566667889999999953322 3344555666666653
No 493
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=27.51 E-value=1.5e+02 Score=21.98 Aligned_cols=38 Identities=11% Similarity=0.317 Sum_probs=27.0
Q ss_pred eeechHHHH-HHHHHHHHhCCCeEEEEccccccccccCC
Q psy5205 46 GVLLGARRV-RDLFKAAKDRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 46 giLl~e~~l-~~~F~~A~~~~p~ilfiDEiD~l~~~R~~ 83 (113)
|+-..|+.. ..+.+...+..|.||+|-.=|++..++.+
T Consensus 134 G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d 172 (287)
T PF05582_consen 134 GIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKD 172 (287)
T ss_pred EEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCC
Confidence 333344443 34555667899999999999999887753
No 494
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=27.44 E-value=1.8e+02 Score=18.96 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
...-+-.+..|-...|.++++||--+-. +...+..+.+++..+
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~ 142 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHL--------DVEGERALNQAIAAL 142 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccc--------CHHHHHHHHHHHHHH
Confidence 3445556667777899999999943222 333344555555554
No 495
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=27.43 E-value=93 Score=20.97 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
...-+-.+..|-...|.++++||--+=. +......+.++|.++
T Consensus 108 G~~qrv~laral~~~p~illlDEPt~~L--------D~~~~~~l~~~L~~~ 150 (200)
T cd03217 108 GEKKRNEILQLLLLEPDLAILDEPDSGL--------DIDALRLVAEVINKL 150 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHH
Confidence 3444555666667889999999942221 333444555555554
No 496
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=27.40 E-value=72 Score=22.10 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=10.3
Q ss_pred hCCCeEEEEccc
Q psy5205 63 DRTPCVVFIDEI 74 (113)
Q Consensus 63 ~~~p~ilfiDEi 74 (113)
...|+++++||.
T Consensus 107 ~~~~~llllDEp 118 (216)
T cd03284 107 ATERSLVLLDEI 118 (216)
T ss_pred CCCCeEEEEecC
Confidence 368999999996
No 497
>PRK05642 DNA replication initiation factor; Validated
Probab=27.35 E-value=56 Score=22.89 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=11.2
Q ss_pred eEEEEccccccccc
Q psy5205 67 CVVFIDEIDSVGAK 80 (113)
Q Consensus 67 ~ilfiDEiD~l~~~ 80 (113)
.+|+||+++.+.++
T Consensus 99 d~LiiDDi~~~~~~ 112 (234)
T PRK05642 99 ELVCLDDLDVIAGK 112 (234)
T ss_pred CEEEEechhhhcCC
Confidence 57889999988654
No 498
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=27.34 E-value=2.2e+02 Score=23.83 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+.++=|=..+.|--..|.||++||.=
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 55666666666767899999999963
No 499
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=27.34 E-value=1.6e+02 Score=22.14 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHH----hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC
Q psy5205 50 GARRVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 50 ~e~~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~ 107 (113)
+-..+|++-+.+. ...--|++||++|.+- ...-|.||.-|+.-..+
T Consensus 88 ~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEEPp~~ 137 (325)
T PRK06871 88 GVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEEPRPN 137 (325)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcCCCCC
Confidence 4456666655542 2334599999999883 35678999999975443
No 500
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=27.31 E-value=2.2e+02 Score=20.04 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+...-+-.+..|-...|.++++||--
T Consensus 123 gGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 123 GGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44555666777778899999999953
Done!