Query psy5205
Match_columns 113
No_of_seqs 165 out of 1145
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 20:02:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1E-29 3.4E-34 190.1 11.8 110 4-113 141-291 (405)
2 4b4t_I 26S protease regulatory 100.0 2.7E-28 9.1E-33 183.4 11.6 110 4-113 175-325 (437)
3 4b4t_L 26S protease subunit RP 100.0 5.8E-28 2E-32 182.3 12.2 110 4-113 174-324 (437)
4 4b4t_K 26S protease regulatory 100.0 5.2E-28 1.8E-32 182.2 11.4 110 4-113 165-315 (428)
5 4b4t_H 26S protease regulatory 99.9 1.3E-27 4.5E-32 180.9 12.3 110 4-113 202-352 (467)
6 4b4t_M 26S protease regulatory 99.9 6.6E-28 2.2E-32 181.8 9.9 110 4-113 174-324 (434)
7 3cf2_A TER ATPase, transitiona 99.9 1.7E-26 5.7E-31 184.4 8.2 111 3-113 469-620 (806)
8 3cf2_A TER ATPase, transitiona 99.9 2.4E-25 8.1E-30 177.8 9.0 108 5-113 198-344 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.8E-19 9.7E-24 130.0 11.6 109 3-113 4-153 (322)
10 3cf0_A Transitional endoplasmi 99.8 5.1E-19 1.8E-23 127.3 9.2 111 3-113 7-158 (301)
11 2ce7_A Cell division protein F 99.8 1.1E-18 3.8E-23 132.9 11.1 112 2-113 6-158 (476)
12 2x8a_A Nuclear valosin-contain 99.8 1.3E-18 4.4E-23 124.1 9.1 110 3-113 2-150 (274)
13 3eie_A Vacuolar protein sortin 99.7 6.9E-18 2.4E-22 122.3 9.7 109 3-113 10-158 (322)
14 2qp9_X Vacuolar protein sortin 99.7 1E-17 3.6E-22 123.1 9.4 109 3-113 43-191 (355)
15 2zan_A Vacuolar protein sortin 99.7 4.3E-17 1.5E-21 123.0 9.2 109 3-113 126-275 (444)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.1E-16 3.6E-21 111.8 10.4 108 6-113 1-149 (262)
17 1lv7_A FTSH; alpha/beta domain 99.7 1.1E-16 3.8E-21 112.1 10.3 111 3-113 4-154 (257)
18 3hu3_A Transitional endoplasmi 99.7 2.7E-16 9.1E-21 120.2 10.5 107 6-113 199-344 (489)
19 3h4m_A Proteasome-activating n 99.7 6.6E-16 2.3E-20 109.3 11.5 110 4-113 10-160 (285)
20 2dhr_A FTSH; AAA+ protein, hex 99.6 6.9E-16 2.4E-20 118.2 10.1 108 6-113 26-173 (499)
21 1ypw_A Transitional endoplasmi 99.6 1.1E-16 3.7E-21 128.3 3.1 110 4-113 470-620 (806)
22 1ixz_A ATP-dependent metallopr 99.6 1.5E-14 5E-19 101.1 11.3 111 2-112 7-157 (254)
23 3b9p_A CG5977-PA, isoform A; A 99.6 1E-14 3.5E-19 103.8 9.8 109 3-113 13-163 (297)
24 3d8b_A Fidgetin-like protein 1 99.6 1.1E-14 3.8E-19 106.9 10.0 108 4-113 77-225 (357)
25 1ypw_A Transitional endoplasmi 99.6 8.9E-15 3E-19 117.2 10.3 108 5-113 198-344 (806)
26 2r62_A Cell division protease 99.6 2.5E-16 8.5E-21 110.7 1.2 112 1-112 1-154 (268)
27 3vfd_A Spastin; ATPase, microt 99.5 2.6E-14 8.8E-19 105.8 9.0 108 4-113 108-256 (389)
28 1iy2_A ATP-dependent metallopr 99.5 3.8E-13 1.3E-17 95.3 11.8 110 3-112 32-181 (278)
29 3cmw_A Protein RECA, recombina 99.3 1.8E-12 6.2E-17 109.9 4.9 111 3-113 1012-1213(1706)
30 2c9o_A RUVB-like 1; hexameric 99.2 6.8E-12 2.3E-16 94.7 3.6 73 4-84 30-145 (456)
31 3t15_A Ribulose bisphosphate c 99.1 3.8E-11 1.3E-15 86.0 5.3 56 50-105 80-140 (293)
32 3syl_A Protein CBBX; photosynt 98.7 6.1E-08 2.1E-12 68.8 8.5 87 12-104 32-166 (309)
33 1g41_A Heat shock protein HSLU 98.3 2.2E-07 7.4E-12 70.3 2.3 90 11-108 15-146 (444)
34 3hws_A ATP-dependent CLP prote 98.2 1.5E-06 5.1E-11 63.4 5.8 93 12-104 16-157 (363)
35 1d2n_A N-ethylmaleimide-sensit 98.2 1.6E-05 5.3E-10 55.6 10.4 59 52-112 111-170 (272)
36 1ofh_A ATP-dependent HSL prote 98.0 6.7E-06 2.3E-10 57.9 5.2 94 11-104 15-155 (310)
37 3uk6_A RUVB-like 2; hexameric 97.5 0.0005 1.7E-08 49.6 8.7 27 5-31 38-64 (368)
38 1um8_A ATP-dependent CLP prote 97.5 0.00022 7.6E-09 52.0 6.2 52 53-104 121-178 (376)
39 3m6a_A ATP-dependent protease 97.5 4E-05 1.4E-09 59.1 2.1 44 52-104 163-206 (543)
40 2p65_A Hypothetical protein PF 97.4 0.0017 5.8E-08 41.7 9.3 31 52-82 101-132 (187)
41 1sxj_A Activator 1 95 kDa subu 97.3 0.00042 1.4E-08 52.9 6.1 42 8-49 36-82 (516)
42 1jbk_A CLPB protein; beta barr 97.2 0.0026 8.8E-08 40.8 8.5 33 51-83 100-133 (195)
43 3cmu_A Protein RECA, recombina 97.2 0.0003 1E-08 61.4 4.6 64 50-113 1490-1558(2050)
44 3u61_B DNA polymerase accessor 97.1 0.0026 8.9E-08 45.1 7.8 85 8-104 23-133 (324)
45 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0015 5.3E-08 51.7 6.9 34 50-83 263-296 (758)
46 3pfi_A Holliday junction ATP-d 96.7 0.0057 1.9E-07 43.6 7.3 76 8-104 26-133 (338)
47 1qvr_A CLPB protein; coiled co 96.6 0.0025 8.4E-08 51.4 5.2 34 50-83 247-281 (854)
48 3pvs_A Replication-associated 96.4 0.0035 1.2E-07 47.2 4.3 69 8-79 23-120 (447)
49 2chg_A Replication factor C sm 95.8 0.088 3E-06 34.2 8.8 23 7-29 13-35 (226)
50 1njg_A DNA polymerase III subu 95.7 0.093 3.2E-06 34.4 8.5 22 8-29 20-41 (250)
51 1hqc_A RUVB; extended AAA-ATPa 95.7 0.017 5.7E-07 40.7 5.0 23 7-29 8-30 (324)
52 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0041 1.4E-07 45.4 1.6 55 50-106 169-223 (331)
53 3te6_A Regulatory protein SIR3 95.5 0.021 7E-07 41.3 5.1 42 50-102 115-158 (318)
54 1sxj_B Activator 1 37 kDa subu 95.0 0.042 1.4E-06 38.3 5.3 23 7-29 17-39 (323)
55 1g41_A Heat shock protein HSLU 95.0 0.043 1.5E-06 41.4 5.5 37 67-104 252-289 (444)
56 2v1u_A Cell division control p 94.9 0.045 1.5E-06 39.0 5.3 45 54-105 118-163 (387)
57 3pxi_A Negative regulator of g 94.5 0.2 6.8E-06 39.8 8.6 33 59-103 573-605 (758)
58 1iqp_A RFCS; clamp loader, ext 94.5 0.15 5E-06 35.6 7.0 23 7-29 21-43 (327)
59 2qby_A CDC6 homolog 1, cell di 94.3 0.098 3.3E-06 37.2 5.9 43 54-104 116-159 (386)
60 1l8q_A Chromosomal replication 93.9 0.19 6.6E-06 35.4 6.6 16 65-80 98-113 (324)
61 1jr3_A DNA polymerase III subu 93.8 0.11 3.6E-06 37.1 5.3 22 8-29 13-34 (373)
62 1r6b_X CLPA protein; AAA+, N-t 93.7 0.31 1.1E-05 38.6 8.2 35 57-103 549-583 (758)
63 3co5_A Putative two-component 93.5 0.2 6.8E-06 31.3 5.5 63 12-78 5-88 (143)
64 1sxj_D Activator 1 41 kDa subu 93.4 0.08 2.7E-06 37.5 4.0 22 7-28 33-54 (353)
65 3n70_A Transport activator; si 93.2 0.16 5.5E-06 31.8 4.8 37 54-105 68-104 (145)
66 4fcw_A Chaperone protein CLPB; 93.1 0.62 2.1E-05 32.3 8.1 29 63-103 117-145 (311)
67 2chq_A Replication factor C sm 92.2 0.039 1.3E-06 38.4 0.9 22 7-28 13-34 (319)
68 1g8p_A Magnesium-chelatase 38 92.0 0.38 1.3E-05 33.9 5.9 22 4-25 17-38 (350)
69 3cmu_A Protein RECA, recombina 92.0 0.1 3.5E-06 46.1 3.3 60 54-113 795-863 (2050)
70 3pxi_A Negative regulator of g 92.0 0.079 2.7E-06 42.1 2.5 61 8-72 177-274 (758)
71 1qvr_A CLPB protein; coiled co 90.8 0.42 1.4E-05 38.5 5.7 35 57-103 652-686 (854)
72 1fnn_A CDC6P, cell division co 90.7 0.41 1.4E-05 34.1 5.0 24 6-29 12-35 (389)
73 2bjv_A PSP operon transcriptio 90.6 0.53 1.8E-05 32.1 5.3 23 7-29 2-24 (265)
74 2z4s_A Chromosomal replication 88.8 0.4 1.4E-05 35.8 3.8 16 65-80 194-209 (440)
75 2r2a_A Uncharacterized protein 88.2 0.92 3.1E-05 30.3 5.0 21 63-83 85-105 (199)
76 1sxj_C Activator 1 40 kDa subu 87.3 1.9 6.5E-05 30.5 6.5 22 8-29 22-43 (340)
77 3pxg_A Negative regulator of g 86.9 0.47 1.6E-05 35.6 3.2 21 52-72 254-274 (468)
78 2qby_B CDC6 homolog 3, cell di 86.7 0.67 2.3E-05 33.0 3.8 21 9-29 18-38 (384)
79 3cmw_A Protein RECA, recombina 86.1 0.75 2.6E-05 40.2 4.3 73 32-105 1472-1554(1706)
80 1a5t_A Delta prime, HOLB; zinc 86.0 1.7 5.8E-05 30.9 5.6 44 50-105 89-136 (334)
81 3ec2_A DNA replication protein 85.0 5.4 0.00018 25.2 8.8 30 65-101 100-129 (180)
82 1xp8_A RECA protein, recombina 84.1 1.6 5.4E-05 31.9 4.8 57 54-110 141-202 (366)
83 2gno_A DNA polymerase III, gam 83.9 2 6.8E-05 30.4 5.1 45 50-106 63-111 (305)
84 1w5s_A Origin recognition comp 82.6 1.2 4.1E-05 31.9 3.6 35 64-104 137-171 (412)
85 2zr9_A Protein RECA, recombina 80.8 1.1 3.9E-05 32.4 2.9 29 51-79 125-153 (349)
86 3io5_A Recombination and repai 79.1 0.89 3E-05 33.1 1.9 50 62-111 108-164 (333)
87 3hr8_A Protein RECA; alpha and 78.1 3.4 0.00012 30.1 4.8 57 51-107 125-186 (356)
88 2c9o_A RUVB-like 1; hexameric 77.8 2.3 7.9E-05 31.6 3.9 29 66-106 296-324 (456)
89 1n0w_A DNA repair protein RAD5 75.2 1.8 6.2E-05 28.6 2.5 27 54-80 108-134 (243)
90 2qen_A Walker-type ATPase; unk 75.1 2.7 9.4E-05 29.1 3.5 20 60-79 123-142 (350)
91 1sxj_E Activator 1 40 kDa subu 74.6 2.3 7.9E-05 29.9 3.0 20 8-27 11-30 (354)
92 2z43_A DNA repair and recombin 74.4 1.4 5E-05 31.2 1.9 52 53-104 190-243 (324)
93 3bos_A Putative DNA replicatio 71.8 1.4 4.7E-05 28.9 1.2 15 65-79 104-118 (242)
94 2fna_A Conserved hypothetical 71.6 3.9 0.00013 28.4 3.6 27 53-79 123-151 (357)
95 1ye8_A Protein THEP1, hypothet 69.9 18 0.00063 23.1 6.4 14 62-75 96-109 (178)
96 3kta_B Chromosome segregation 67.9 19 0.00064 23.2 6.1 15 64-78 85-99 (173)
97 2cvh_A DNA repair and recombin 65.1 2.1 7.2E-05 27.8 1.0 16 65-80 105-120 (220)
98 1vc3_B L-aspartate-alpha-decar 64.9 3.9 0.00013 24.4 2.0 20 59-78 72-91 (96)
99 1uhe_A Aspartate 1-decarboxyla 64.8 4.6 0.00016 24.1 2.3 21 59-79 70-90 (97)
100 3nbx_X ATPase RAVA; AAA+ ATPas 64.2 4.9 0.00017 30.6 3.0 26 65-102 109-134 (500)
101 1ojl_A Transcriptional regulat 63.7 7 0.00024 27.4 3.6 26 66-103 97-122 (304)
102 3auy_A DNA double-strand break 63.2 18 0.00062 25.9 5.8 34 60-101 299-333 (371)
103 3plx_B Aspartate 1-decarboxyla 62.7 5.3 0.00018 24.0 2.3 22 59-80 71-92 (102)
104 2i1q_A DNA repair and recombin 62.4 3 0.0001 29.3 1.4 51 54-104 192-244 (322)
105 1in4_A RUVB, holliday junction 62.0 20 0.00067 25.3 5.7 21 9-29 23-43 (334)
106 2w0m_A SSO2452; RECA, SSPF, un 61.6 4.1 0.00014 26.4 1.9 26 53-78 109-136 (235)
107 3lda_A DNA repair protein RAD5 61.1 5.6 0.00019 29.4 2.7 51 54-104 262-313 (400)
108 2r44_A Uncharacterized protein 58.4 7 0.00024 27.3 2.8 19 10-28 26-44 (331)
109 1u94_A RECA protein, recombina 56.0 5.6 0.00019 28.8 2.0 21 60-80 136-156 (356)
110 2ehv_A Hypothetical protein PH 55.9 23 0.00079 23.1 5.0 48 52-102 122-169 (251)
111 2kjq_A DNAA-related protein; s 55.4 11 0.00038 23.4 3.1 14 65-78 83-96 (149)
112 1v5w_A DMC1, meiotic recombina 55.3 4.7 0.00016 28.8 1.5 27 54-80 206-234 (343)
113 4a74_A DNA repair and recombin 55.1 4.3 0.00015 26.4 1.2 27 54-80 109-140 (231)
114 2dr3_A UPF0273 protein PH0284; 53.0 42 0.0014 21.7 5.9 43 54-101 117-159 (247)
115 3f9v_A Minichromosome maintena 51.6 7.2 0.00025 30.2 2.1 26 66-103 392-417 (595)
116 1w1w_A Structural maintenance 50.4 31 0.0011 25.1 5.3 15 64-78 354-368 (430)
117 2i3b_A HCR-ntpase, human cance 49.9 10 0.00035 24.8 2.3 16 62-77 102-117 (189)
118 1b5p_A Protein (aspartate amin 49.6 19 0.00065 25.4 3.9 35 43-78 175-209 (385)
119 1cr0_A DNA primase/helicase; R 49.0 34 0.0012 23.3 5.1 24 56-79 138-161 (296)
120 2r2n_A Kynurenine/alpha-aminoa 47.9 21 0.00073 25.6 4.0 36 42-78 201-236 (425)
121 1pqh_A Aspartate 1-decarboxyla 47.8 10 0.00035 24.1 2.0 21 59-79 113-133 (143)
122 4aby_A DNA repair protein RECN 47.0 48 0.0016 23.7 5.8 36 58-101 306-343 (415)
123 2c45_A Aspartate 1-decarboxyla 46.5 10 0.00034 24.0 1.8 21 59-79 96-116 (139)
124 3qgu_A LL-diaminopimelate amin 46.3 18 0.00061 26.1 3.4 36 43-79 220-255 (449)
125 1e69_A Chromosome segregation 45.9 39 0.0013 23.6 5.0 30 64-101 240-269 (322)
126 1nlf_A Regulatory protein REPA 45.9 16 0.00054 24.9 2.9 29 50-80 120-148 (279)
127 4dq6_A Putative pyridoxal phos 44.9 23 0.00079 24.7 3.7 37 42-79 174-210 (391)
128 3gfo_A Cobalt import ATP-bindi 44.7 61 0.0021 22.3 5.8 25 50-74 146-170 (275)
129 1gd9_A Aspartate aminotransfer 44.7 28 0.00095 24.4 4.1 37 42-79 170-206 (389)
130 7aat_A Aspartate aminotransfer 44.6 21 0.00071 25.2 3.5 36 42-78 185-220 (401)
131 4eu1_A Mitochondrial aspartate 43.6 22 0.00076 25.2 3.5 36 42-78 193-228 (409)
132 2dou_A Probable N-succinyldiam 43.5 31 0.0011 24.0 4.2 36 43-79 169-204 (376)
133 3k7y_A Aspartate aminotransfer 43.1 17 0.0006 26.4 2.9 34 42-76 184-217 (405)
134 3ihj_A Alanine aminotransferas 43.0 18 0.00063 26.9 3.1 37 42-79 245-281 (498)
135 3tui_C Methionine import ATP-b 42.9 84 0.0029 22.9 6.5 25 50-74 166-190 (366)
136 3fsl_A Aromatic-amino-acid ami 42.8 26 0.00089 24.5 3.8 36 42-78 183-218 (397)
137 1fg7_A Histidinol phosphate am 42.8 29 0.00099 24.2 4.0 36 42-79 156-191 (356)
138 3k1j_A LON protease, ATP-depen 42.5 23 0.0008 27.2 3.7 22 7-28 37-58 (604)
139 2zu0_C Probable ATP-dependent 42.3 77 0.0026 21.6 6.0 25 50-74 167-191 (267)
140 3fvq_A Fe(3+) IONS import ATP- 41.0 70 0.0024 23.2 5.8 24 50-73 141-164 (359)
141 3tcm_A Alanine aminotransferas 40.9 20 0.00069 26.6 3.0 36 42-78 247-282 (500)
142 1pzn_A RAD51, DNA repair and r 40.9 20 0.00068 25.7 2.9 17 64-80 230-246 (349)
143 2ff7_A Alpha-hemolysin translo 40.9 75 0.0025 21.4 5.7 44 50-101 148-191 (247)
144 3ei9_A LL-diaminopimelate amin 40.3 25 0.00086 25.1 3.4 34 44-78 210-243 (432)
145 3fdb_A Beta C-S lyase, putativ 40.2 33 0.0011 23.7 4.0 37 42-79 160-196 (377)
146 2r6a_A DNAB helicase, replicat 40.0 16 0.00054 27.1 2.3 20 61-80 309-328 (454)
147 2d2e_A SUFC protein; ABC-ATPas 39.8 70 0.0024 21.5 5.4 43 51-101 147-189 (250)
148 3dzz_A Putative pyridoxal 5'-p 39.6 31 0.0011 24.0 3.7 37 42-79 170-206 (391)
149 1yaa_A Aspartate aminotransfer 39.6 31 0.0011 24.4 3.8 37 41-78 185-221 (412)
150 3h14_A Aminotransferase, class 39.6 33 0.0011 24.0 3.9 36 43-79 172-207 (391)
151 3dyd_A Tyrosine aminotransfera 39.5 25 0.00085 25.3 3.2 37 42-79 201-237 (427)
152 1vp4_A Aminotransferase, putat 39.4 34 0.0012 24.4 4.0 37 42-79 198-234 (425)
153 2b8t_A Thymidine kinase; deoxy 39.3 24 0.00083 23.7 3.0 23 55-77 75-101 (223)
154 3asa_A LL-diaminopimelate amin 39.3 30 0.001 24.5 3.6 35 43-78 174-208 (400)
155 1g6h_A High-affinity branched- 39.2 87 0.003 21.1 5.9 25 50-74 156-180 (257)
156 3piu_A 1-aminocyclopropane-1-c 39.0 28 0.00094 25.0 3.4 35 43-78 202-236 (435)
157 3f6t_A Aspartate aminotransfer 38.5 34 0.0011 25.7 3.9 37 42-78 254-290 (533)
158 2ay1_A Aroat, aromatic amino a 38.1 29 0.00098 24.3 3.3 37 41-78 178-214 (394)
159 4f4e_A Aromatic-amino-acid ami 37.9 26 0.0009 25.0 3.2 36 42-78 205-240 (420)
160 2gb3_A Aspartate aminotransfer 37.6 41 0.0014 23.8 4.1 35 44-79 186-220 (409)
161 4h51_A Aspartate aminotransfer 37.6 24 0.00081 26.0 2.9 35 43-78 201-235 (420)
162 3kax_A Aminotransferase, class 37.6 27 0.00093 24.2 3.1 37 42-79 166-202 (383)
163 3g0t_A Putative aminotransfera 37.5 35 0.0012 24.3 3.7 36 42-78 192-227 (437)
164 4akg_A Glutathione S-transfera 37.0 34 0.0012 31.6 4.2 31 65-98 1336-1366(2695)
165 1lc5_A COBD, L-threonine-O-3-p 36.9 36 0.0012 23.6 3.7 36 43-79 157-192 (364)
166 1z47_A CYSA, putative ABC-tran 36.9 89 0.0031 22.5 5.8 25 50-74 148-172 (355)
167 3jtx_A Aminotransferase; NP_28 36.9 32 0.0011 24.0 3.5 37 42-79 178-214 (396)
168 3ele_A Amino transferase; RER0 36.6 36 0.0012 23.9 3.7 38 42-79 182-224 (398)
169 3b6e_A Interferon-induced heli 36.5 25 0.00086 22.3 2.6 14 65-78 162-175 (216)
170 1c7n_A Cystalysin; transferase 36.3 37 0.0013 23.8 3.7 37 42-79 174-210 (399)
171 3nra_A Aspartate aminotransfer 36.2 31 0.0011 24.2 3.3 37 42-79 189-225 (407)
172 3b46_A Aminotransferase BNA3; 36.1 39 0.0013 24.4 3.9 37 42-79 211-247 (447)
173 2q7w_A Aspartate aminotransfer 36.0 30 0.001 24.2 3.2 36 42-78 182-217 (396)
174 3ezs_A Aminotransferase ASPB; 36.0 36 0.0012 23.6 3.5 37 42-79 164-200 (376)
175 2o0r_A RV0858C (N-succinyldiam 35.9 45 0.0015 23.6 4.1 37 42-79 170-206 (411)
176 2x5d_A Probable aminotransfera 35.9 33 0.0011 24.3 3.4 37 42-79 182-218 (412)
177 3e2y_A Kynurenine-oxoglutarate 35.8 35 0.0012 23.9 3.5 37 42-79 177-213 (410)
178 1f2t_B RAD50 ABC-ATPase; DNA d 35.7 78 0.0027 19.6 5.4 15 60-74 76-90 (148)
179 1yiz_A Kynurenine aminotransfe 35.6 35 0.0012 24.2 3.5 37 42-79 192-228 (429)
180 1ajs_A Aspartate aminotransfer 35.6 30 0.001 24.4 3.2 36 42-78 193-228 (412)
181 3op7_A Aminotransferase class 35.5 42 0.0015 23.2 3.9 36 42-78 164-199 (375)
182 1oxx_K GLCV, glucose, ABC tran 35.4 97 0.0033 22.2 5.8 25 50-74 143-167 (353)
183 3g7q_A Valine-pyruvate aminotr 35.2 32 0.0011 24.2 3.2 33 43-76 191-223 (417)
184 2olj_A Amino acid ABC transpor 35.0 1.1E+02 0.0036 20.9 8.3 44 50-101 162-205 (263)
185 3fvs_A Kynurenine--oxoglutarat 35.0 37 0.0013 24.0 3.5 37 42-79 184-220 (422)
186 1g29_1 MALK, maltose transport 34.9 1E+02 0.0035 22.3 5.9 25 50-74 142-166 (372)
187 1iay_A ACC synthase 2, 1-amino 34.7 39 0.0013 24.0 3.6 35 43-78 199-233 (428)
188 3aow_A Putative uncharacterize 34.3 31 0.0011 25.1 3.1 38 41-79 226-263 (448)
189 2ihy_A ABC transporter, ATP-bi 34.0 1.1E+02 0.0039 20.9 5.9 25 50-74 164-188 (279)
190 1o4s_A Aspartate aminotransfer 33.9 40 0.0014 23.7 3.5 36 43-79 185-220 (389)
191 1v2d_A Glutamine aminotransfer 33.9 49 0.0017 23.0 4.0 37 42-79 162-198 (381)
192 2cbz_A Multidrug resistance-as 33.8 73 0.0025 21.2 4.7 25 50-74 130-154 (237)
193 1v43_A Sugar-binding transport 33.8 1.3E+02 0.0046 21.7 6.5 22 53-74 147-168 (372)
194 1d2f_A MALY protein; aminotran 33.7 35 0.0012 23.9 3.2 37 42-79 172-208 (390)
195 3rlf_A Maltose/maltodextrin im 33.4 87 0.003 22.9 5.3 24 50-73 136-159 (381)
196 3t18_A Aminotransferase class 33.1 45 0.0015 23.6 3.7 37 42-78 189-230 (413)
197 2o1b_A Aminotransferase, class 33.0 47 0.0016 23.5 3.8 37 42-79 191-227 (404)
198 1j32_A Aspartate aminotransfer 32.5 44 0.0015 23.3 3.5 37 42-79 173-209 (388)
199 3meb_A Aspartate aminotransfer 32.3 32 0.0011 25.0 2.9 35 42-77 212-246 (448)
200 3rq1_A Aminotransferase class 32.0 43 0.0015 23.7 3.5 35 42-76 190-229 (418)
201 2it1_A 362AA long hypothetical 32.0 97 0.0033 22.4 5.4 25 50-74 136-160 (362)
202 1ji0_A ABC transporter; ATP bi 31.8 1.1E+02 0.0039 20.3 5.8 25 50-74 142-166 (240)
203 2zyj_A Alpha-aminodipate amino 31.8 40 0.0014 23.7 3.3 37 42-79 173-209 (397)
204 2zc0_A Alanine glyoxylate tran 31.7 43 0.0015 23.5 3.4 37 41-78 184-220 (407)
205 3tif_A Uncharacterized ABC tra 31.5 45 0.0015 22.3 3.3 25 50-74 148-172 (235)
206 1bw0_A TAT, protein (tyrosine 31.3 34 0.0012 24.2 2.8 35 43-78 188-222 (416)
207 3if2_A Aminotransferase; YP_26 31.2 41 0.0014 24.1 3.2 33 43-76 217-249 (444)
208 1vpl_A ABC transporter, ATP-bi 31.0 1.2E+02 0.0042 20.4 8.9 44 50-101 149-192 (256)
209 3d6k_A Putative aminotransfera 30.9 27 0.00091 25.0 2.2 37 41-77 188-224 (422)
210 1b0u_A Histidine permease; ABC 30.9 1.2E+02 0.0042 20.4 8.6 44 50-101 156-199 (262)
211 2zy4_A L-aspartate beta-decarb 30.8 50 0.0017 25.0 3.8 38 42-79 255-293 (546)
212 3ftb_A Histidinol-phosphate am 30.8 43 0.0015 22.9 3.3 35 43-78 155-189 (361)
213 1q7s_A BIT1, protein CGI-147; 30.7 65 0.0022 19.4 3.7 41 32-72 39-83 (117)
214 3nh6_A ATP-binding cassette SU 30.6 60 0.0021 22.8 4.0 25 50-74 193-217 (306)
215 3oug_A Aspartate 1-decarboxyla 30.3 8.4 0.00029 23.6 -0.5 16 59-75 99-114 (114)
216 1u08_A Hypothetical aminotrans 30.3 58 0.002 22.7 3.9 36 42-78 173-208 (386)
217 2x5f_A Aspartate_tyrosine_phen 30.2 53 0.0018 23.4 3.7 38 42-79 199-240 (430)
218 4ag6_A VIRB4 ATPase, type IV s 30.2 1.3E+02 0.0044 21.4 5.8 43 55-102 250-294 (392)
219 3l8a_A METC, putative aminotra 29.8 43 0.0015 23.9 3.1 37 42-79 204-240 (421)
220 1xi9_A Putative transaminase; 29.8 44 0.0015 23.6 3.2 37 42-79 184-220 (406)
221 2pcj_A ABC transporter, lipopr 29.3 47 0.0016 22.0 3.1 25 50-74 143-167 (224)
222 2ghi_A Transport protein; mult 29.0 1.3E+02 0.0046 20.2 5.7 44 50-101 158-201 (260)
223 3ppl_A Aspartate aminotransfer 28.7 30 0.001 24.7 2.2 36 41-77 190-226 (427)
224 2yyz_A Sugar ABC transporter, 28.7 94 0.0032 22.4 4.8 24 50-73 136-159 (359)
225 3qkt_A DNA double-strand break 28.4 1.1E+02 0.0037 21.5 5.0 18 57-74 264-281 (339)
226 3euc_A Histidinol-phosphate am 28.2 45 0.0016 23.0 3.0 37 42-78 167-204 (367)
227 1eg5_A Aminotransferase; PLP-d 28.1 51 0.0017 22.7 3.2 33 43-78 150-183 (384)
228 2pze_A Cystic fibrosis transme 28.0 60 0.002 21.5 3.5 25 50-74 133-157 (229)
229 2nq2_C Hypothetical ABC transp 27.9 59 0.002 22.0 3.5 25 50-74 131-155 (253)
230 2f9i_B Acetyl-coenzyme A carbo 27.8 1.2E+02 0.004 21.3 5.0 23 50-72 141-164 (285)
231 3fwu_A Macrophage migration in 27.7 64 0.0022 19.7 3.3 76 18-108 39-115 (133)
232 2ozp_A N-acetyl-gamma-glutamyl 27.3 63 0.0022 23.1 3.7 33 41-73 231-273 (345)
233 2pjz_A Hypothetical protein ST 27.3 1.5E+02 0.0051 20.2 6.1 25 50-74 131-155 (263)
234 1sgw_A Putative ABC transporte 27.2 55 0.0019 21.6 3.1 25 50-74 136-160 (214)
235 1ny5_A Transcriptional regulat 26.9 64 0.0022 23.2 3.7 12 66-77 232-243 (387)
236 1vcz_A RNAse NGR3; hydrolase, 26.7 1.4E+02 0.0048 19.7 5.1 40 30-69 123-162 (217)
237 1wn2_A Peptidyl-tRNA hydrolase 26.7 87 0.003 19.0 3.7 42 32-73 43-88 (121)
238 3guv_A Site-specific recombina 26.5 1.2E+02 0.0041 18.8 4.7 62 15-79 23-89 (167)
239 2w58_A DNAI, primosome compone 26.4 22 0.00074 22.6 0.9 13 66-78 116-128 (202)
240 1jy5_A CALSEPRRP; RNAse, alpha 25.7 1.2E+02 0.0042 19.8 4.7 40 30-69 130-169 (212)
241 3oiy_A Reverse gyrase helicase 25.2 35 0.0012 24.3 1.9 30 50-79 124-153 (414)
242 2yz2_A Putative ABC transporte 25.2 66 0.0023 21.9 3.3 25 50-74 141-165 (266)
243 3fkd_A L-threonine-O-3-phospha 24.9 58 0.002 22.3 3.0 33 44-79 141-173 (350)
244 3bvp_A INT, TP901-1 integrase; 24.8 76 0.0026 19.1 3.3 62 15-79 22-85 (138)
245 1yqt_A RNAse L inhibitor; ATP- 24.8 1.9E+02 0.0066 21.9 6.1 24 50-73 161-184 (538)
246 4f1h_A Tyrosyl-DNA phosphodies 24.7 55 0.0019 20.5 2.7 25 51-75 20-44 (250)
247 1sgl_A Trichomaglin; S-like ri 24.5 1.3E+02 0.0045 19.6 4.6 40 30-69 130-169 (209)
248 3bk7_A ABC transporter ATP-bin 24.2 2E+02 0.0067 22.3 6.1 25 50-74 231-255 (607)
249 1svv_A Threonine aldolase; str 24.1 60 0.002 22.1 3.0 31 44-75 156-186 (359)
250 1xyg_A Putative N-acetyl-gamma 24.0 64 0.0022 23.2 3.2 34 41-74 249-292 (359)
251 3crv_A XPD/RAD3 related DNA he 23.7 58 0.002 24.6 3.0 17 65-81 173-189 (551)
252 2zv3_A PTH, peptidyl-tRNA hydr 23.4 80 0.0027 18.9 3.1 41 32-72 37-81 (115)
253 4gz1_A Tyrosyl-DNA phosphodies 23.3 60 0.0021 20.7 2.7 25 51-75 26-50 (256)
254 2q6t_A DNAB replication FORK h 23.3 51 0.0017 24.2 2.6 20 61-80 306-325 (444)
255 4g1u_C Hemin import ATP-bindin 23.3 70 0.0024 21.8 3.2 24 50-73 144-173 (266)
256 3f6p_A Transcriptional regulat 23.0 63 0.0022 18.2 2.5 21 53-73 34-54 (120)
257 2ord_A Acoat, acetylornithine 22.9 66 0.0023 22.5 3.1 33 43-76 194-227 (397)
258 4ad8_A DNA repair protein RECN 22.9 78 0.0027 23.7 3.6 23 56-78 406-430 (517)
259 1mv5_A LMRA, multidrug resista 22.8 64 0.0022 21.5 2.8 26 50-75 142-167 (243)
260 3qf7_A RAD50; ABC-ATPase, ATPa 22.6 2.1E+02 0.0072 20.3 6.8 10 64-73 302-311 (365)
261 3i42_A Response regulator rece 22.6 69 0.0024 18.0 2.7 21 53-73 35-55 (127)
262 1rlk_A Hypothetical protein TA 22.6 87 0.003 18.8 3.1 42 32-73 39-84 (117)
263 3cq5_A Histidinol-phosphate am 22.4 70 0.0024 22.2 3.1 35 41-79 173-207 (369)
264 2zts_A Putative uncharacterize 22.4 1.1E+02 0.0037 19.6 3.9 30 51-80 121-150 (251)
265 3t6k_A Response regulator rece 22.3 69 0.0024 18.5 2.7 21 53-73 36-56 (136)
266 3lte_A Response regulator; str 22.3 69 0.0024 18.1 2.7 21 53-73 38-58 (132)
267 1vec_A ATP-dependent RNA helic 22.2 27 0.00091 22.1 0.8 30 50-79 129-160 (206)
268 3b85_A Phosphate starvation-in 22.1 20 0.00069 23.7 0.2 14 62-75 119-132 (208)
269 2cjg_A L-lysine-epsilon aminot 21.9 95 0.0032 22.4 3.8 33 43-76 242-275 (449)
270 3iav_A Propionyl-COA carboxyla 21.8 1.2E+02 0.004 23.4 4.4 24 50-73 117-141 (530)
271 3ozx_A RNAse L inhibitor; ATP 21.7 2.7E+02 0.0092 21.1 6.8 25 50-74 141-165 (538)
272 2bbs_A Cystic fibrosis transme 21.5 90 0.0031 21.6 3.5 25 50-74 162-186 (290)
273 3nhm_A Response regulator; pro 21.4 83 0.0029 17.8 2.9 21 53-73 35-55 (133)
274 3iuy_A Probable ATP-dependent 21.4 26 0.0009 22.7 0.6 14 66-79 168-181 (228)
275 2onk_A Molybdate/tungstate ABC 21.3 58 0.002 21.9 2.4 25 50-74 129-153 (240)
276 2ez2_A Beta-tyrosinase, tyrosi 21.2 84 0.0029 22.5 3.4 34 43-77 186-219 (456)
277 3hym_A Anaphase-promoting comp 20.9 54 0.0019 14.9 1.4 22 3-24 6-27 (29)
278 3gf3_A Glutaconyl-COA decarbox 20.8 1.3E+02 0.0046 23.4 4.5 25 50-74 126-151 (588)
279 4fva_A 5'-tyrosyl-DNA phosphod 20.7 73 0.0025 20.3 2.7 25 51-75 30-54 (256)
280 3grc_A Sensor protein, kinase; 20.7 87 0.003 17.9 2.9 21 53-73 38-58 (140)
281 2eyu_A Twitching motility prot 20.5 61 0.0021 22.0 2.4 22 53-74 86-107 (261)
282 4f4c_A Multidrug resistance pr 20.4 1.8E+02 0.0061 24.8 5.5 48 55-113 1223-1272(1321)
283 3gl9_A Response regulator; bet 20.1 69 0.0024 18.1 2.3 20 53-72 34-53 (122)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-29 Score=190.06 Aligned_cols=110 Identities=36% Similarity=0.703 Sum_probs=101.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||||++++|++|++.+.+ +++|+.|.++|++||+|+||
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 56899999999999999999999999 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|+.|++++||||||||+|+++++|+.+++ +....+++++||++|||+.+..+|+||
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 7999999999999999999999999999999975443 346678999999999999998888875
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-28 Score=183.37 Aligned_cols=110 Identities=40% Similarity=0.694 Sum_probs=101.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||||++++|++|++.+.+ +++|+.|..+|+++|+|+||
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 57899999999999999999999999 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|+.|++++||||||||+|+++++|+.++. +....+++++||++||++....+|+||
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 7999999999999999999999999999999965442 456779999999999999988888876
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-28 Score=182.27 Aligned_cols=110 Identities=41% Similarity=0.750 Sum_probs=101.2
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||||++++|++|++.+.+ +++|+.|.++|++||+|+||
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 47899999999999999999999999 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|..|+.++||||||||+|+++++|.+++. +....+++++||++|||+.+..+|+||
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 7899999999999999999999999999999965442 356678999999999999988888875
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-28 Score=182.19 Aligned_cols=110 Identities=40% Similarity=0.727 Sum_probs=101.4
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||||++++|++|++.+.+ +++|+.|.++|++||+|+||
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 57899999999999999999999988 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC--CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~--~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|..|++++|||+||||+|+++++|.+.. .+....+++++||++|||+.+..+|+||
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI 315 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVI 315 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEE
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 789999999999999999999999999999996443 3456789999999999999988888876
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-27 Score=180.91 Aligned_cols=110 Identities=40% Similarity=0.767 Sum_probs=101.5
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||||++++|++|++.+.+ +++|+.|.++|+++|+|+||
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 57999999999999999999999998 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|..|+.++||||||||+|+++.+|+.++. +....+++++||++||++....+|+||
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 7899999999999999999999999999999976543 345678999999999999988888876
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.6e-28 Score=181.85 Aligned_cols=110 Identities=40% Similarity=0.705 Sum_probs=100.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|+++|+||||++++|++|++.+.+ +++|+.|.++|+++|+|+||
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 57899999999999999999998888 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|..|++++||||||||+|+++++|.+++. +....+++++||++|||+.+.++|+||
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 7899999999999999999999999999999975442 345678999999999999988888875
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.93 E-value=1.7e-26 Score=184.42 Aligned_cols=111 Identities=36% Similarity=0.701 Sum_probs=94.8
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
++.|+++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+||
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 567899999999999999999999999 99999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+|++++++|+.|++++||||||||+|+++++|+.+ ++++..+|++|+||++|||+.+.++|+||
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 89999999999999999999999999999999743 33567789999999999999988888886
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.92 E-value=2.4e-25 Score=177.80 Aligned_cols=108 Identities=32% Similarity=0.650 Sum_probs=100.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
.|.++|+||+|+++++++|++++.+ +++|+.|..+|++||+|+||
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4789999999999999999999998 99999999999999999999
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++++|+.|+.++||||||||+|+|+++|++++ ++..++++++||++||++..+.+|+||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 789999999999999999999999999999998765 556789999999999999888888875
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=129.97 Aligned_cols=109 Identities=35% Similarity=0.603 Sum_probs=95.2
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|+++|+||+|++++|+.|++.+.+ +++++.|.. +..+++|+||
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 467899999999999999999999888 999999874 3677899999
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC-CCceEEc
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ-NEGVVVL 113 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~-~~~v~vi 113 (113)
+++.++.+|..|+..+||||||||+|+++++|.... +....+++++||++||++.. ..+++||
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC-TTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc-chHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 578999999999999999999999999999987664 56678999999999999863 5666654
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.78 E-value=5.1e-19 Score=127.25 Aligned_cols=111 Identities=36% Similarity=0.719 Sum_probs=97.0
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|.++|+||+|+++++++|++.+.+ +.+++.|..+|+.+++|+||
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 456899999999999999999999988 99999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC--CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~--~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++.+|..|+...|||+||||+|+++..|+... .++...+++++||+.||++....+++||
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi 158 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 158 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEE
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 456789999999999999999999999999886432 2345578999999999998777777765
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.78 E-value=1.1e-18 Score=132.94 Aligned_cols=112 Identities=57% Similarity=0.975 Sum_probs=94.6
Q ss_pred CCC-CCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec-------------------------------
Q psy5205 2 DPE-EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------------------- 49 (113)
Q Consensus 2 ~~~-~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl------------------------------- 49 (113)
.+. .+.++|+||+|.+++++++++++..+.++..|..+|.++|+|+||
T Consensus 6 ~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~ 85 (476)
T 2ce7_A 6 KPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDF 85 (476)
T ss_dssp CCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGT
T ss_pred ccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHH
Confidence 345 788999999999999999999998899999999999999999999
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|+.|+..+||||||||+|+++.+|+.+ +.+....+++++||.+||++....+++||
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVI 158 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVM 158 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEE
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEE
Confidence 56789999999999999999999999999988642 23445668999999999998776677665
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=124.13 Aligned_cols=110 Identities=35% Similarity=0.668 Sum_probs=82.4
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|+++|+||+|++++|++|++.+.+ +.+++.|..+++.+++|++|
T Consensus 2 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~ 81 (274)
T 2x8a_A 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELL 81 (274)
T ss_dssp ----------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTC
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHH
Confidence 456899999999999999999997777 99999999999999999888
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|..|+...||++|+||+|.++..|+... .....+++++++++|||......++++
T Consensus 82 ~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 82 NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCSTTCEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc-chHHHHHHHHHHHhhhcccccCCEEEE
Confidence 467899999999999999999999999998776432 334567899999999999877766653
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.74 E-value=6.9e-18 Score=122.27 Aligned_cols=109 Identities=33% Similarity=0.608 Sum_probs=90.2
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|.++|+||+|++.++++|++.+.+ +.+++.|.. +..+++|+||
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 356899999999999999999998888 999998876 5577899999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC-CCCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~-~~~~v~vi 113 (113)
+++.++.+|..|+...|+||||||+|.++++|+.+. +...+++.++|+..|+++. ...+++||
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vi 158 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVL 158 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCCEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc-chHHHHHHHHHHHHhccccccCCceEEE
Confidence 578899999999999999999999999999886554 5567899999999999984 45556654
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.73 E-value=1e-17 Score=123.10 Aligned_cols=109 Identities=33% Similarity=0.607 Sum_probs=86.8
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
...|.++|+||+|++.+++.|++.+.+ +++++.|.. +..+++|+||
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 456889999999999999999998888 999999987 5678899999
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC-CCceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ-NEGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~-~~~v~vi 113 (113)
+++.++.+|..|+...|+||||||+|.++++|+.+. +...++++++||++||++.. ..+++||
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vI 191 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVL 191 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc-chHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 578899999999999999999999999999887654 56778999999999999854 4556554
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.70 E-value=4.3e-17 Score=122.97 Aligned_cols=109 Identities=35% Similarity=0.603 Sum_probs=92.6
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.+.|.++|+||+|++.+++.|.+.+.+ +++++.|.. +..+++|+||
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 457899999999999999999998887 999998874 3567799999
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC-CCceEEc
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ-NEGVVVL 113 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~-~~~v~vi 113 (113)
+++.++.+|..|+..+|+||||||+|+++++|.... +....+++++||++||++.. ..+++||
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC-CGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc-ccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 356789999999999999999999999999887654 56778999999999999853 4556554
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=111.79 Aligned_cols=108 Identities=55% Similarity=0.957 Sum_probs=77.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec------------------------------------
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------------------------ 49 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl------------------------------------ 49 (113)
|+++|++|+|++.+++++++++..+.+++.|..+|..+++|+||
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 67899999999999999999998899999999999999999999
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC---CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 --GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV---LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 --~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~---~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++.+|..|+...|+||||||+|.++.+|+... .+......+++|+.++++.....+++||
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 467899999999999999999999999998886432 1234457899999999998766666664
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=1.1e-16 Score=112.12 Aligned_cols=111 Identities=55% Similarity=0.982 Sum_probs=90.9
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+..+..+|+||+|++.+++++.+++.++.+++.|..+|..+|+|+++
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 46688999999999999999999998899999999999999999998
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++.+|..|+...|+++||||+|.++..|... +......++++++|+.||++....+++||
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 154 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 154 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 46789999999999999999999999999887643 22334458999999999998777666664
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.67 E-value=2.7e-16 Score=120.17 Aligned_cols=107 Identities=33% Similarity=0.665 Sum_probs=96.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec-----------------------------------
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL----------------------------------- 49 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl----------------------------------- 49 (113)
+.++|++|+|.+.++++|++.+.. +++++.|..+|..+++|+||
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 457899999999999999999998 99999999999999999999
Q ss_pred ---hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ---GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ---~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++..++.+|..|...+|++|||||+|+++++|+... +....+++++||..||+.....+++||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc-chHHHHHHHHHHHHhhccccCCceEEE
Confidence 467899999999999999999999999999987654 556789999999999998777777764
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=6.6e-16 Score=109.27 Aligned_cols=110 Identities=45% Similarity=0.813 Sum_probs=95.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
..|+++|++|+|++.++++|.+.+.. +.+++.|..+|..+++++||
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 56789999999999999999999888 99999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+++.++.+|..|+...|+||||||+|.++++|.+... .....+.+.+++.+++++....+++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 160 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKII 160 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEE
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 4678999999999999999999999999998875432 234568889999999988776666664
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.65 E-value=6.9e-16 Score=118.16 Aligned_cols=108 Identities=60% Similarity=0.988 Sum_probs=93.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec------------------------------------
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------------------------ 49 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl------------------------------------ 49 (113)
+.++|+||+|.++++.++++++..+.++..|..++.+.|+|+||
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 88999999999999999999998899999999999999999988
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 --GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 --~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|+.|+...||++||||+|.++.+|..+ ..+....+.++++|.+||+......++++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vivi 173 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 173 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEE
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEE
Confidence 35679999999988899999999999999888642 22445568999999999998776666654
No 21
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.62 E-value=1.1e-16 Score=128.26 Aligned_cols=110 Identities=36% Similarity=0.731 Sum_probs=92.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
+.|.++|++++|++.+|++|.+.+.+ +.+++.|..+++.+++++||
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 45789999999999999999999988 89999999999999999999
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCC--CchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~--~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|+.|+...|||+||||+|+++.+|++... ++...+++++||++||++....+++||
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 5789999999999999999999999999999975432 246779999999999999877777765
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.59 E-value=1.5e-14 Score=101.13 Aligned_cols=111 Identities=59% Similarity=0.952 Sum_probs=90.0
Q ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 2 ~~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
.++.|.++|++++|++.++.+++++...+.++..+..++...++|+++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 467899999999999999999999888888899999999999999888
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEE
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVV 112 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~v 112 (113)
+++.++.+|+.+....|+++|+||+|.++..|..+ ..+....+.+++++.+|++......+++
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 34678899999988899999999999999877542 2244567889999999999876665554
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.58 E-value=1e-14 Score=103.78 Aligned_cols=109 Identities=38% Similarity=0.618 Sum_probs=86.6
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec--------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL-------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl-------------------------------- 49 (113)
...|.++|++|+|.+.+++.|++.+.. ..+++.|...+ .+++++||
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 456789999999999999999998888 88899887665 46788888
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCC---CceEEc
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN---EGVVVL 113 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~---~~v~vi 113 (113)
+++.++.+|..|+...|++|||||+|.++..|.... +....++.++||..+|+.... .+++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi 163 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPDGDRIVVL 163 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEE
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-chHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 578899999999999999999999999999886543 445578999999999988643 345543
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=106.90 Aligned_cols=108 Identities=35% Similarity=0.636 Sum_probs=85.8
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
..+.++|++|+|.+.+++.|.+.+.+ +.+++.|...+ .+++++||
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 45789999999999999999999888 88999887765 57788888
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC--CCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~--~~~v~vi 113 (113)
+++.++.+|..|+...|+||||||+|.++.+|+.+. +....+++++||..|++... ..+++||
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~~v~vI 225 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATTSSEDRILVV 225 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc-chHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 467899999999999999999999999999887544 55678999999999999753 3455553
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.58 E-value=8.9e-15 Score=117.23 Aligned_cols=108 Identities=33% Similarity=0.651 Sum_probs=96.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
.+.++|+||+|++.++++|++.+.+ +.+++.|..+++.+++++||
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3569999999999999999999998 99999999999999999999
Q ss_pred ----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 ----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++++++.+|..|....|+++|+||+|.++.+|+... .....+++++|++.|++......+++|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC-SHHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc-chHHHHHHHHHHHHhhhhcccccEEEe
Confidence 567899999999999999999999999999987654 556789999999999999877766664
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.58 E-value=2.5e-16 Score=110.72 Aligned_cols=112 Identities=54% Similarity=0.891 Sum_probs=88.6
Q ss_pred CCCCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec-------------------------------
Q psy5205 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------------------- 49 (113)
Q Consensus 1 ~~~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl------------------------------- 49 (113)
|.++.|.++|++|+|.+.+++++++++..+.+++.|..++..+++|+||
T Consensus 1 i~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred CCccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 5688999999999999999999999988899999999999999999999
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC---CCchhHHHHHHHHHHhcCCCCC-CceEE
Q psy5205 50 -------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV---LHPYANQTINQLLAEMDGFHQN-EGVVV 112 (113)
Q Consensus 50 -------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~---~~~~~~~i~~~lL~~ld~~~~~-~~v~v 112 (113)
+++.++.+|+.|....|+||||||+|.+..+|..++ .+....+++++|+..|++.... ..++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 154 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEE
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEE
Confidence 234567889999999999999999999998875322 1233346788999999987643 33444
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=105.79 Aligned_cols=108 Identities=35% Similarity=0.616 Sum_probs=83.8
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
..+.++|++|+|.+.+++.|.+.+.. ..+++.|...+ .+++++||
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34678999999999999999998888 88888888776 46788888
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC--CCceEEc
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEGVVVL 113 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~--~~~v~vi 113 (113)
++..++.+|..|+...|+||||||+|.++..|..+. +....++.++|+..|+++.. ...++||
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc-chHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 567899999999999999999999999998886543 45678999999999998764 3445554
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.49 E-value=3.8e-13 Score=95.30 Aligned_cols=110 Identities=60% Similarity=0.973 Sum_probs=89.2
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec---------------------------------
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------- 49 (113)
.+.|.++|++++|.+++++++++++..+.++..+..++...++|+++
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34588999999999999999999988888899999999999999888
Q ss_pred -----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCC--CCCchhHHHHHHHHHHhcCCCCCCceEE
Q psy5205 50 -----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS--VLHPYANQTINQLLAEMDGFHQNEGVVV 112 (113)
Q Consensus 50 -----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~--~~~~~~~~i~~~lL~~ld~~~~~~~v~v 112 (113)
..+.++.+|+.+....|+++|+||+|.++..|... .......+.+++++.+|++......+++
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~ 181 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 181 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEE
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 24568899999988899999999999998877532 1234557889999999999876655554
No 29
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.29 E-value=1.8e-12 Score=109.92 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=77.9
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHH-hcC----------hhhHhh------cCCC----------CCce--eec----
Q psy5205 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKN----------PEKFST------LGGK----------LPKG--VLL---- 49 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~~~i~~-~~~----------~~~~~~------~g~~----------~~~g--iLl---- 49 (113)
+..+.++|+|++|+++.|+.+.+.+.+ +.+ ++.++. .|+. +|+| +|+
T Consensus 1012 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1012 GSASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred cccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence 345679999999999999999998888 744 556665 3333 5666 666
Q ss_pred -----------------------------------------------------hHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 50 -----------------------------------------------------GARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 50 -----------------------------------------------------~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
+|+.++.+|..||+.+||++|+||+|+
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~a 1171 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1171 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHh
Confidence 288999999999999999999999999
Q ss_pred cccccC---CCC--CCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 77 VGAKRT---NSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 77 l~~~R~---~~~--~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
|+++|+ ..+ ..+...|+++++|++||++...++|+||
T Consensus 1172 l~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~ 1213 (1706)
T 3cmw_A 1172 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 1213 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE
Confidence 999953 222 1256778999999999998777777663
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.20 E-value=6.8e-12 Score=94.71 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=57.7
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec----------------------------------
Q psy5205 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------------------------------- 49 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl---------------------------------- 49 (113)
..|...|++++|.+.+++++.+++..++. |..+++|+||
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred cChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 45678899999999999999998866432 4456778888
Q ss_pred ------hHHHHHHHHHHH---HhCCCeEEEEccccccccccCCC
Q psy5205 50 ------GARRVRDLFKAA---KDRTPCVVFIDEIDSVGAKRTNS 84 (113)
Q Consensus 50 ------~e~~l~~~F~~A---~~~~p~ilfiDEiD~l~~~R~~~ 84 (113)
+++ ++++|..| +...||||||||+|+++++|+..
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence 344 88999999 88899999999999999999755
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.15 E-value=3.8e-11 Score=85.98 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHH----HhCCCeEEEEccccccccccCCCCC-CchhHHHHHHHHHHhcCCC
Q psy5205 50 GARRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVL-HPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 50 ~e~~l~~~F~~A----~~~~p~ilfiDEiD~l~~~R~~~~~-~~~~~~i~~~lL~~ld~~~ 105 (113)
+++.++++|..| +...||||||||+|++++++++... ....+++.+.|++.||+..
T Consensus 80 ~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 140 (293)
T 3t15_A 80 PAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 140 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccc
Confidence 567899999999 5789999999999999997664332 2345678899999998553
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.72 E-value=6.1e-08 Score=68.80 Aligned_cols=87 Identities=22% Similarity=0.304 Sum_probs=65.2
Q ss_pred cccccHHHHHHHHHHHHHhcChhhHhhcCCCCCc---eeec---------------------------------------
Q psy5205 12 DVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPK---GVLL--------------------------------------- 49 (113)
Q Consensus 12 di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~---giLl--------------------------------------- 49 (113)
+|+|++.+++.|.+++..+..+..+..+|+.+++ ++||
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 7999999999999998885557777777755543 4666
Q ss_pred ------hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 50 ------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 ------~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
+++.++.+|..+ .++||||||+|.+++++.+. .....+.+.|+..|+.-
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~---~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER---DYGQEAIEILLQVMENN 166 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHC
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc---cccHHHHHHHHHHHhcC
Confidence 345567777766 57899999999999776542 23467889999999864
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.30 E-value=2.2e-07 Score=70.35 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=49.1
Q ss_pred CcccccHHHHHHHHHHHHH-hcChhhHhhcCCC-CCceeec---------------------------------------
Q psy5205 11 KDVRGVDEAKQELKEIVEF-LKNPEKFSTLGGK-LPKGVLL--------------------------------------- 49 (113)
Q Consensus 11 ~di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~-~~~giLl--------------------------------------- 49 (113)
++|+|.+++|+.|...+.. ++++..+...+.. +++++||
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999888766 6666665554432 5678888
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCC
Q psy5205 50 -GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108 (113)
Q Consensus 50 -~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~ 108 (113)
+++.++++|..|+... ++||+|.+..... +...++++++||++|||+.+..
T Consensus 95 d~e~~lr~lf~~a~~~~----~~De~d~~~~~~~----~~~e~rvl~~LL~~~dg~~~~~ 146 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLV----RQQEIAKNRARAE----DVAEERILDALLPPAKNQWGEV 146 (444)
T ss_dssp CTHHHHHHHHHHHHHHH----HHHHHHSCC------------------------------
T ss_pred cHHHHHHHHHHHHHhcc----hhhhhhhhhccch----hhHHHHHHHHHHHHhhcccccc
Confidence 4778999999997754 4899888754322 3456899999999999996543
No 34
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.25 E-value=1.5e-06 Score=63.41 Aligned_cols=93 Identities=24% Similarity=0.277 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhHhh-cC-CCCCceeec---------------------------------------
Q psy5205 12 DVRGVDEAKQELKEIVEF-LKNPEKFST-LG-GKLPKGVLL--------------------------------------- 49 (113)
Q Consensus 12 di~G~~~~k~~l~~~i~~-~~~~~~~~~-~g-~~~~~giLl--------------------------------------- 49 (113)
.|+|.+.+++.+...+.. ......... .+ ..+++++||
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 369999999999887754 222111000 11 124566777
Q ss_pred -hHHHHHHHHHHH----HhCCCeEEEEccccccccccCCCCCC--chhHHHHHHHHHHhcCC
Q psy5205 50 -GARRVRDLFKAA----KDRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 -~e~~l~~~F~~A----~~~~p~ilfiDEiD~l~~~R~~~~~~--~~~~~i~~~lL~~ld~~ 104 (113)
.++.++.+|..+ ....|+||||||+|.+..+|++.+.+ ....++.+.||+.||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 134567777766 45679999999999999888654422 22235999999999953
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.22 E-value=1.6e-05 Score=55.62 Aligned_cols=59 Identities=14% Similarity=0.254 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC-CCceEE
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ-NEGVVV 112 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~-~~~v~v 112 (113)
..++.+|+.|....|++|||||+|.+++.+..+. .....+++.|+..+++... ...++|
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh--hHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 5788999999888999999999999988775432 2346788888888887653 334433
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.02 E-value=6.7e-06 Score=57.88 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=58.8
Q ss_pred CcccccHHHHHHHHHHHHH-hcChhhHhhc-CCCCCceeec---------------------------------------
Q psy5205 11 KDVRGVDEAKQELKEIVEF-LKNPEKFSTL-GGKLPKGVLL--------------------------------------- 49 (113)
Q Consensus 11 ~di~G~~~~k~~l~~~i~~-~~~~~~~~~~-g~~~~~giLl--------------------------------------- 49 (113)
++|+|.+.+++.+...+.. +.++...... +..++.++|+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999887755 3332211110 0123445555
Q ss_pred -hHHHHHHHHHHH-----HhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 50 -GARRVRDLFKAA-----KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 50 -~e~~l~~~F~~A-----~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
.+..++++|..+ +...++||||||+|.+...+...+.+.....+.+.|+..|++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~ 155 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS 155 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC
Confidence 124567776643 1234899999999999987764432333335678899999874
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.55 E-value=0.0005 Score=49.57 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHhc
Q psy5205 5 EINITFKDVRGVDEAKQELKEIVEFLK 31 (113)
Q Consensus 5 ~~~~~~~di~G~~~~k~~l~~~i~~~~ 31 (113)
+|..+|++++|.+..++.+..+...+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~ 64 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIR 64 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHH
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHH
Confidence 566679999999999998877765543
No 38
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.49 E-value=0.00022 Score=51.98 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHHHHHHHHH----hCCCeEEEEccccccccccCCCCCC--chhHHHHHHHHHHhcCC
Q psy5205 53 RVRDLFKAAK----DRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGF 104 (113)
Q Consensus 53 ~l~~~F~~A~----~~~p~ilfiDEiD~l~~~R~~~~~~--~~~~~i~~~lL~~ld~~ 104 (113)
.+..+|..+. ...++|+||||+|.+...|++.... .....+.+.|+..|++-
T Consensus 121 ~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 121 ILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp HHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCC
T ss_pred HHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcc
Confidence 3555555432 3468999999999999876543211 11224889999999963
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.47 E-value=4e-05 Score=59.06 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
..+...|..|....| |+||||+|.+...+.+ ...+.||..||..
T Consensus 163 ~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~ 206 (543)
T 3m6a_A 163 GRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPE 206 (543)
T ss_dssp -CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTT
T ss_pred hHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhh
Confidence 345667877766666 9999999999876532 1456788888754
No 40
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.43 E-value=0.0017 Score=41.72 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhC-CCeEEEEccccccccccC
Q psy5205 52 RRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRT 82 (113)
Q Consensus 52 ~~l~~~F~~A~~~-~p~ilfiDEiD~l~~~R~ 82 (113)
..++++|..+... .|++|||||+|.+.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~ 132 (187)
T 2p65_A 101 ERLKSILKEVQDAEGQVVMFIDEIHTVVGAGA 132 (187)
T ss_dssp HHHHHHHHHHHHTTTSEEEEETTGGGGSSSSS
T ss_pred HHHHHHHHHHHhcCCceEEEEeCHHHhccccc
Confidence 4577777777665 789999999999987765
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.32 E-value=0.00042 Score=52.91 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=29.7
Q ss_pred CCCCcccccHHHHHHHHHHHHH--hcChhhHhhcCCC---CCceeec
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF--LKNPEKFSTLGGK---LPKGVLL 49 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~--~~~~~~~~~~g~~---~~~giLl 49 (113)
.+|++++|.+.+++.|.+.+.. ..++..+.+.|.. +++++||
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL 82 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAML 82 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEE
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEE
Confidence 4899999999999999988765 2333445544433 5567777
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.0026 Score=40.81 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEccccccccccCC
Q psy5205 51 ARRVRDLFKAAK-DRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 51 e~~l~~~F~~A~-~~~p~ilfiDEiD~l~~~R~~ 83 (113)
++.++++|..+. ...|++|||||+|.+..++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~ 133 (195)
T 1jbk_A 100 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA 133 (195)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEEETGGGGTT----
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc
Confidence 345677777654 456999999999999876643
No 43
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.20 E-value=0.0003 Score=61.41 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccccccccc---CCCCCCch--hHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR---TNSVLHPY--ANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R---~~~~~~~~--~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+|+.++.++..++..+|++|||||++++.+.+ +..+++.. ..|+++++|.+|++.....+++||
T Consensus 1490 ~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI 1558 (2050)
T 3cmu_A 1490 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 1558 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 45788999999999999999999999999854 22222222 468999999999998766666654
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.06 E-value=0.0026 Score=45.14 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=51.2
Q ss_pred CCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec---------------------hHHHHHHHHHHHHhC--
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------------------GARRVRDLFKAAKDR-- 64 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl---------------------~e~~l~~~F~~A~~~-- 64 (113)
.+|++++|.+.+++.+++.+..-+.+..|- ++.+++.|--. +...+++.+..+...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L-~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~ 101 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIIL-HSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAAS 101 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEE-ECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCC
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEE-eeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcc
Confidence 578999999999999988876422121111 12223333211 245566655544333
Q ss_pred ---CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 65 ---TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 65 ---~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
.+.++||||+|.+.+ ....+.|+..|+..
T Consensus 102 ~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~ 133 (324)
T 3u61_B 102 FDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAY 133 (324)
T ss_dssp CSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhC
Confidence 679999999999952 22445666666644
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.02 E-value=0.0015 Score=51.71 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~ 83 (113)
.++.++.+|+.+....++||||||+|.+++.++.
T Consensus 263 ~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~ 296 (758)
T 1r6b_X 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA 296 (758)
T ss_dssp HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS
T ss_pred HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC
Confidence 4778999999998888999999999999987654
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.73 E-value=0.0057 Score=43.56 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=49.4
Q ss_pred CCCCcccccHHHHHHHHHHHHHhcChhhHhhcCCCCCceeec--------------------------------hHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------------------------GARRVR 55 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~~~~~~~~~~~g~~~~~giLl--------------------------------~e~~l~ 55 (113)
.+|++++|.+.+++++...+.....+ ..++..+|+ ....+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLA 98 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHH
Confidence 38999999999999999987763211 112333444 233444
Q ss_pred HHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 56 DLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 56 ~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
..+.. ...+++|||||+|.+. ....+.|+..|+.-
T Consensus 99 ~~~~~--~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~ 133 (338)
T 3pfi_A 99 AILTN--LSEGDILFIDEIHRLS------------PAIEEVLYPAMEDY 133 (338)
T ss_dssp HHHHT--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTS
T ss_pred HHHHh--ccCCCEEEEechhhcC------------HHHHHHHHHHHHhc
Confidence 44432 3468999999999984 24556677777653
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.63 E-value=0.0025 Score=51.44 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEccccccccccCC
Q psy5205 50 GARRVRDLFKAAKDR-TPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~-~p~ilfiDEiD~l~~~R~~ 83 (113)
.++.++.+|..+... .|+||||||+|.+.+.++.
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~ 281 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA 281 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC---------
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc
Confidence 456789999999875 7999999999999877654
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.35 E-value=0.0035 Score=47.20 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=44.6
Q ss_pred CCCCcccccHHHH---HHHHHHHHHhc-ChhhHhhcCCCCCceeec---------------------hHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAK---QELKEIVEFLK-NPEKFSTLGGKLPKGVLL---------------------GARRVRDLFKAAK 62 (113)
Q Consensus 8 ~~~~di~G~~~~k---~~l~~~i~~~~-~~~~~~~~g~~~~~giLl---------------------~e~~l~~~F~~A~ 62 (113)
.+|++++|.+.++ +.|+..+..-+ ++-++ + ++|+.|--. +.+.++++|..|.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL--~-GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~ 99 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMIL--W-GPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERAR 99 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEE--E-CSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEE--E-CCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHH
Confidence 5789999999999 67777665511 11111 1 123333211 5677888888886
Q ss_pred h----CCCeEEEEcccccccc
Q psy5205 63 D----RTPCVVFIDEIDSVGA 79 (113)
Q Consensus 63 ~----~~p~ilfiDEiD~l~~ 79 (113)
. ..+++|||||+|.+..
T Consensus 100 ~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 100 QNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp HHHHTTCCEEEEEETTTCC--
T ss_pred HhhhcCCCcEEEEeChhhhCH
Confidence 4 4689999999999843
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.82 E-value=0.088 Score=34.19 Aligned_cols=23 Identities=43% Similarity=0.433 Sum_probs=19.0
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+..++.+.+.+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~ 35 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER 35 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC
Confidence 45789999999999998887654
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.66 E-value=0.093 Score=34.41 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.3
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..|++++|.+..++.+.+.+..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~ 41 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL 41 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc
Confidence 4678999999999999887755
No 51
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.66 E-value=0.017 Score=40.67 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=19.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+..++.+.+.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~ 30 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEA 30 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHH
Confidence 34899999999999999988765
No 52
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.62 E-value=0.0041 Score=45.38 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
.+..++.+++.+.+.. +|+||+++++...+.+....+...+.+++++..|+++..
T Consensus 169 le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k 223 (331)
T 2vhj_A 169 FNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAA 223 (331)
T ss_dssp HHHHHHHHHHHHHHCS--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 3556666777776555 999999999976554322222334567777777776533
No 53
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.021 Score=41.32 Aligned_cols=42 Identities=5% Similarity=0.109 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHH--HhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 50 GARRVRDLFKAA--KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 50 ~e~~l~~~F~~A--~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
+.+.++++|..+ ....|+|+|+||+|.+. . ..++..|+.+.+
T Consensus 115 ~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----~------q~~L~~l~~~~~ 158 (318)
T 3te6_A 115 SLEALNFYITNVPKAKKRKTLILIQNPENLL-----S------EKILQYFEKWIS 158 (318)
T ss_dssp CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----C------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCceEEEEecHHHhh-----c------chHHHHHHhccc
Confidence 467789999875 45679999999999997 1 246677776554
No 54
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.042 Score=38.32 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.9
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+..++.|.+.+..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~ 39 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD 39 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc
Confidence 35689999999999999887654
No 55
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.98 E-value=0.043 Score=41.43 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=26.0
Q ss_pred eEEEEccccccccccCCCCCCchh-HHHHHHHHHHhcCC
Q psy5205 67 CVVFIDEIDSVGAKRTNSVLHPYA-NQTINQLLAEMDGF 104 (113)
Q Consensus 67 ~ilfiDEiD~l~~~R~~~~~~~~~-~~i~~~lL~~ld~~ 104 (113)
.|+|+||+|.++.+.++.+ ...+ ..+..+||..||+-
T Consensus 252 ~il~~DEidki~~~~~~~~-~D~s~egvq~aLL~~le~~ 289 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGS 289 (444)
T ss_dssp CEEEEETGGGGSCCSSCSS-SHHHHHHHHHHHHHHHHCC
T ss_pred CeeeHHHHHHHhhccCCCC-CCchHHHHHHHHHHHhccc
Confidence 5899999999987654322 2222 23778999999984
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.92 E-value=0.045 Score=39.05 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHHHHHhC-CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC
Q psy5205 54 VRDLFKAAKDR-TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 54 l~~~F~~A~~~-~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
++.++..+... .|++|||||+|.+...+ .....+..++..++...
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQELG 163 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhcC
Confidence 44555554444 48999999999997543 12467788888877653
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.53 E-value=0.2 Score=39.75 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
..++...++||||||+|.+- ..+.+.||+.||.
T Consensus 573 ~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 573 EKVRRKPYSVVLLDAIEKAH------------PDVFNILLQVLED 605 (758)
T ss_dssp HHHHHCSSSEEEEECGGGSC------------HHHHHHHHHHHHH
T ss_pred HHHHhCCCeEEEEeCccccC------------HHHHHHHHHHhcc
Confidence 44455667999999998772 3678888888886
No 58
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.15 Score=35.57 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.3
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
..+|++++|.+.+++.+...+..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~ 43 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT 43 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc
Confidence 35789999999999999887755
No 59
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.33 E-value=0.098 Score=37.18 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCC-CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 54 VRDLFKAAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 54 l~~~F~~A~~~~-p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
++.+++...... |++|+|||+|.+...++ ...+..++..++..
T Consensus 116 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 116 YRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEV 159 (386)
T ss_dssp HHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhc
Confidence 445555554444 99999999999975432 13567787777765
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.85 E-value=0.19 Score=35.41 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=13.7
Q ss_pred CCeEEEEccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAK 80 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~ 80 (113)
.|++|||||+|.+..+
T Consensus 98 ~~~vL~iDEi~~l~~~ 113 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGK 113 (324)
T ss_dssp TCSEEEEECGGGGTTC
T ss_pred CCCEEEEcCcccccCC
Confidence 4899999999999753
No 61
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.84 E-value=0.11 Score=37.12 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.9
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|++++|.+.+++.+...+..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~ 34 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL 34 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh
Confidence 4789999999999999888765
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.74 E-value=0.31 Score=38.55 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=26.3
Q ss_pred HHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 57 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 57 ~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+....+...++||||||+|.+- ..+.+.|++.||.
T Consensus 549 l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 549 LTDAVIKHPHAVLLLDEIEKAH------------PDVFNILLQVMDN 583 (758)
T ss_dssp HHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEEeCccccC------------HHHHHHHHHHhcC
Confidence 3444556668999999999762 3588899999884
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.47 E-value=0.2 Score=31.29 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=33.0
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhHhhcCCCCCcee--------------e-c-----hHHHHHHHHHHHHhCCCeEEE
Q psy5205 12 DVRGVDEAKQELKEIVEF-LKNPEKFSTLGGKLPKGV--------------L-L-----GARRVRDLFKAAKDRTPCVVF 70 (113)
Q Consensus 12 di~G~~~~k~~l~~~i~~-~~~~~~~~~~g~~~~~gi--------------L-l-----~e~~l~~~F~~A~~~~p~ilf 70 (113)
+++|.+...+++.+.+.. ...+.-.-=+| .++.|- . + .+......|+.|. +.++|
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G-~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~l~ 80 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTG-EAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAE---GGVLY 80 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEE-ETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTT---TSEEE
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEEC-CCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCC---CCeEE
Confidence 577888888888887765 32221000000 111111 1 1 2233556676653 58999
Q ss_pred Eccccccc
Q psy5205 71 IDEIDSVG 78 (113)
Q Consensus 71 iDEiD~l~ 78 (113)
|||+|.+.
T Consensus 81 lDei~~l~ 88 (143)
T 3co5_A 81 VGDIAQYS 88 (143)
T ss_dssp EEECTTCC
T ss_pred EeChHHCC
Confidence 99999984
No 64
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.39 E-value=0.08 Score=37.47 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.6
Q ss_pred CCCCCcccccHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVE 28 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~ 28 (113)
..+|++++|.+.+++.+...+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~ 54 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLK 54 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHh
Confidence 3578999999999888877654
No 65
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.25 E-value=0.16 Score=31.76 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
....|..| .+++|||||+|.+.. .....|+..|....
T Consensus 68 ~~~~~~~a---~~g~l~ldei~~l~~------------~~q~~Ll~~l~~~~ 104 (145)
T 3n70_A 68 LNDFIALA---QGGTLVLSHPEHLTR------------EQQYHLVQLQSQEH 104 (145)
T ss_dssp HHHHHHHH---TTSCEEEECGGGSCH------------HHHHHHHHHHHSSS
T ss_pred hhcHHHHc---CCcEEEEcChHHCCH------------HHHHHHHHHHhhcC
Confidence 44555555 457999999998842 23455666665443
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.06 E-value=0.62 Score=32.25 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=21.8
Q ss_pred hCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
....+++||||+|.+. ..+.+.|+..|+.
T Consensus 117 ~~~~~vl~lDEi~~l~------------~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 117 RRPYSVILFDAIEKAH------------PDVFNILLQMLDD 145 (311)
T ss_dssp HCSSEEEEEETGGGSC------------HHHHHHHHHHHHH
T ss_pred hCCCeEEEEeChhhcC------------HHHHHHHHHHHhc
Confidence 4455999999999883 2567788888775
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.20 E-value=0.039 Score=38.43 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=17.8
Q ss_pred CCCCCcccccHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVE 28 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~ 28 (113)
..+|++++|.+.+++.+.+.+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~ 34 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVE 34 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTT
T ss_pred CCCHHHHhCCHHHHHHHHHHHh
Confidence 3578999999999988877654
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.02 E-value=0.38 Score=33.92 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=16.5
Q ss_pred CCCCCCCCcccccHHHHHHHHH
Q psy5205 4 EEINITFKDVRGVDEAKQELKE 25 (113)
Q Consensus 4 ~~~~~~~~di~G~~~~k~~l~~ 25 (113)
..+..+|++++|.+.+++.+..
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~ 38 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLL 38 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHH
T ss_pred CCCCCCchhccChHHHHHHHHH
Confidence 3467899999999998776543
No 69
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.97 E-value=0.1 Score=46.06 Aligned_cols=60 Identities=8% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHHh----CCCeEEEEcccccccc-cc----CCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 54 VRDLFKAAKD----RTPCVVFIDEIDSVGA-KR----TNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 54 l~~~F~~A~~----~~p~ilfiDEiD~l~~-~R----~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
+.++++.+++ ..|++++||.++++.. .+ .++...+...|.+++++..|..+....++.||
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI 863 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 863 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 6777777765 7899999999999986 32 11111123356789999999988665555553
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.95 E-value=0.079 Score=42.07 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=40.4
Q ss_pred CCCCcccccHHHHHHHHHHHHH-h-cChhhHhhcCCCCCceeec-----------------------------------h
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF-L-KNPEKFSTLGGKLPKGVLL-----------------------------------G 50 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~-~-~~~~~~~~~g~~~~~giLl-----------------------------------~ 50 (113)
-++++++|.+..++++.+++.. - .+.-++ +.|+.|--. .
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~----G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~ 252 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI----GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEF 252 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE----SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEE----CCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchH
Confidence 4678999999999988887644 1 111111 112112111 2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFID 72 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiD 72 (113)
+.+++.+|..+....|+|||||
T Consensus 253 e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 253 EDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 3478999999999999999999
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.82 E-value=0.42 Score=38.51 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=25.9
Q ss_pred HHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 57 LFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 57 ~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+....+...+++|||||+|.+- ..+.+.|++.||.
T Consensus 652 l~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 652 LTEAVRRRPYSVILFDEIEKAH------------PDVFNILLQILDD 686 (854)
T ss_dssp HHHHHHHCSSEEEEESSGGGSC------------HHHHHHHHHHHTT
T ss_pred HHHHHHhCCCeEEEEecccccC------------HHHHHHHHHHhcc
Confidence 3334445567999999998762 3688999999985
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.71 E-value=0.41 Score=34.08 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=19.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHHH
Q psy5205 6 INITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 6 ~~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
+...++++.|.+...+++.+.+..
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~ 35 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGN 35 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHH
Confidence 455668899999999998887765
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.55 E-value=0.53 Score=32.08 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=12.6
Q ss_pred CCCCCcccccHHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~~ 29 (113)
+.+|++++|.+...+++.+.+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~~~~ 24 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQVSH 24 (265)
T ss_dssp --------CCCHHHHHHHHHHHH
T ss_pred CcccccceeCCHHHHHHHHHHHH
Confidence 35799999999999988877665
No 74
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.81 E-value=0.4 Score=35.76 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=14.2
Q ss_pred CCeEEEEccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAK 80 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~ 80 (113)
.|++|||||+|.+.++
T Consensus 194 ~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGK 209 (440)
T ss_dssp TCSEEEEECGGGGSSC
T ss_pred CCCEEEEeCcccccCC
Confidence 7999999999999754
No 75
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.18 E-value=0.92 Score=30.26 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.3
Q ss_pred hCCCeEEEEccccccccccCC
Q psy5205 63 DRTPCVVFIDEIDSVGAKRTN 83 (113)
Q Consensus 63 ~~~p~ilfiDEiD~l~~~R~~ 83 (113)
+..+++|+|||++.+.++|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~ 105 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSA 105 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCT
T ss_pred ccCceEEEEEChhhhccCccc
Confidence 456899999999999887743
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.35 E-value=1.9 Score=30.49 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.2
Q ss_pred CCCCcccccHHHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i~~ 29 (113)
.+|+++.|.+.+++.|...+..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~ 43 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE 43 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT
T ss_pred CcHHHhcCcHHHHHHHHHHHhc
Confidence 4689999999999988887654
No 77
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=86.86 E-value=0.47 Score=35.61 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFID 72 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiD 72 (113)
..++.+|..++...|+|||||
T Consensus 254 ~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 254 DRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp TTHHHHHHHHHTCCCCEEEEC
T ss_pred HHHHHHHHHHHhcCCeEEEEe
Confidence 568899999998999999999
No 78
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.66 E-value=0.67 Score=33.00 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCCcccccHHHHHHHHHHHHH
Q psy5205 9 TFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 9 ~~~di~G~~~~k~~l~~~i~~ 29 (113)
..++++|.+...+++.+.+..
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~ 38 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRY 38 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHH
Confidence 347888998888888877655
No 79
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.14 E-value=0.75 Score=40.16 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=54.2
Q ss_pred ChhhHhhcCCCCCceeec-----hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCC-----CCchhHHHHHHHHHHh
Q psy5205 32 NPEKFSTLGGKLPKGVLL-----GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV-----LHPYANQTINQLLAEM 101 (113)
Q Consensus 32 ~~~~~~~~g~~~~~giLl-----~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~-----~~~~~~~i~~~lL~~l 101 (113)
++...+++|+...+ +++ +|..+..+...++..+|+++++|.+.++.++.+-.+ .-+-..|..++-|..|
T Consensus 1472 ~~~~~~~~Gv~~~~-l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l 1550 (1706)
T 3cmw_A 1472 DPIYARKLGVDIDN-LLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 1550 (1706)
T ss_dssp CHHHHHHTTCCGGG-CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCHHH-eEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHH
Confidence 44566778877655 333 799999999999999999999999999998765321 1133457778888877
Q ss_pred cCCC
Q psy5205 102 DGFH 105 (113)
Q Consensus 102 d~~~ 105 (113)
.+.-
T Consensus 1551 ~~~~ 1554 (1706)
T 3cmw_A 1551 AGNL 1554 (1706)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=86.04 E-value=1.7 Score=30.90 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHh----CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCC
Q psy5205 50 GARRVRDLFKAAKD----RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH 105 (113)
Q Consensus 50 ~e~~l~~~F~~A~~----~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~ 105 (113)
+-..++++.+.+.. ..+.|++|||+|.+.. ...|.||..|+.-.
T Consensus 89 ~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEep~ 136 (334)
T 1a5t_A 89 GVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEEPP 136 (334)
T ss_dssp CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcCCC
Confidence 34568888888753 3478999999999832 35688999998643
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=85.03 E-value=5.4 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=19.0
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.|.+|++||+++... +......+.+++...
T Consensus 100 ~~~llilDE~~~~~~-------~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 100 NSPVLVLDDLGSERL-------SDWQRELISYIITYR 129 (180)
T ss_dssp TCSEEEEETCSSSCC-------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcC-------CHHHHHHHHHHHHHH
Confidence 689999999986522 334445555555544
No 82
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.06 E-value=1.6 Score=31.91 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccccCCC---CCC--chhHHHHHHHHHHhcCCCCCCce
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS---VLH--PYANQTINQLLAEMDGFHQNEGV 110 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~---~~~--~~~~~i~~~lL~~ld~~~~~~~v 110 (113)
+..+-..++...+.+|+||.+.++..+.... ++. +...+.+++++..|..+....++
T Consensus 141 l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~ 202 (366)
T 1xp8_A 141 LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGT 202 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333334445789999999999998533211 101 11225667777777655333333
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=83.85 E-value=2 Score=30.45 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhC----CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 50 GARRVRDLFKAAKDR----TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~----~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
+-..++++.+.|... ...|++|||+|.+- ....|.||.-|+....
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep~~ 111 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEPPE 111 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSCCT
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCCCC
Confidence 445688999888532 24699999999983 2346889999986543
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.57 E-value=1.2 Score=31.90 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=22.9
Q ss_pred CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCC
Q psy5205 64 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~ 104 (113)
..|.+|+|||+|.+...+.. ....+..++..++..
T Consensus 137 ~~~~llvlDe~~~l~~~~~~------~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRI------AAEDLYTLLRVHEEI 171 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTS------CHHHHHHHHTHHHHS
T ss_pred CCeEEEEEeCHHHHhhccCc------chHHHHHHHHHHHhc
Confidence 56999999999999654221 134555566555544
No 85
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.77 E-value=1.1 Score=32.36 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+..+..+...+++..|.+|+||++.++..
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 34444444455567899999999999985
No 86
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=79.11 E-value=0.89 Score=33.10 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=29.4
Q ss_pred HhCCCeEEEEccccccccccCCC---CCC--c--hhHHHHHHHHHHhcCCCCCCceE
Q psy5205 62 KDRTPCVVFIDEIDSVGAKRTNS---VLH--P--YANQTINQLLAEMDGFHQNEGVV 111 (113)
Q Consensus 62 ~~~~p~ilfiDEiD~l~~~R~~~---~~~--~--~~~~i~~~lL~~ld~~~~~~~v~ 111 (113)
++..|.+++||-+-++.++-+-. +++ + .-.|.++++|..|-++.+..++.
T Consensus 108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~ 164 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIP 164 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 56689999999999998533211 111 1 23467788877766554333333
No 87
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.11 E-value=3.4 Score=30.09 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccccccccc--CC-CCCC--chhHHHHHHHHHHhcCCCCC
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TN-SVLH--PYANQTINQLLAEMDGFHQN 107 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R--~~-~~~~--~~~~~i~~~lL~~ld~~~~~ 107 (113)
+..+..+-..++...|.+++||.+-++.+.. ++ .+.. ....+.+++++..|..+...
T Consensus 125 e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~ 186 (356)
T 3hr8_A 125 EQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186 (356)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445789999999999988621 11 1111 12346777888777776433
No 88
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.84 E-value=2.3 Score=31.59 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.0
Q ss_pred CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCC
Q psy5205 66 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106 (113)
Q Consensus 66 p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~ 106 (113)
|.|+||||+|.+- ....|.|+..|+.-..
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~~~ 324 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESSIA 324 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTSTTC
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhccCC
Confidence 4699999999982 3578999999986543
No 89
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.20 E-value=1.8 Score=28.61 Aligned_cols=27 Identities=4% Similarity=0.043 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccc
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~ 80 (113)
+..+.+.+....|.+|+|||+-++...
T Consensus 108 ~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 108 LYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 344555566678999999999988753
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.13 E-value=2.7 Score=29.13 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHHhCCCeEEEEcccccccc
Q psy5205 60 AAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 60 ~A~~~~p~ilfiDEiD~l~~ 79 (113)
.+....|.+|+|||++.+..
T Consensus 123 ~~~~~~~~vlvlDe~~~~~~ 142 (350)
T 2qen_A 123 LGEELGEFIVAFDEAQYLRF 142 (350)
T ss_dssp HHHHHSCEEEEEETGGGGGG
T ss_pred HHhccCCEEEEEeCHHHHhc
Confidence 33333599999999999864
No 91
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.58 E-value=2.3 Score=29.92 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.9
Q ss_pred CCCCcccccHHHHHHHHHHH
Q psy5205 8 ITFKDVRGVDEAKQELKEIV 27 (113)
Q Consensus 8 ~~~~di~G~~~~k~~l~~~i 27 (113)
.+|++++|.+.+++.++..+
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~ 30 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLS 30 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTT
T ss_pred CCHHHhcCCHHHHHHHHHHH
Confidence 46899999999998888766
No 92
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.45 E-value=1.4 Score=31.18 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=30.8
Q ss_pred HHHHHHHHHHh-CCCeEEEEccccccccccCCCCCCc-hhHHHHHHHHHHhcCC
Q psy5205 53 RVRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLHP-YANQTINQLLAEMDGF 104 (113)
Q Consensus 53 ~l~~~F~~A~~-~~p~ilfiDEiD~l~~~R~~~~~~~-~~~~i~~~lL~~ld~~ 104 (113)
.+..+.+.+++ ..|.+|+||.+.++......+.... .....+++++..|..+
T Consensus 190 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~l 243 (324)
T 2z43_A 190 IVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRL 243 (324)
T ss_dssp HHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 34555566666 7899999999999975322111111 1123456666666554
No 93
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.82 E-value=1.4 Score=28.90 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.7
Q ss_pred CCeEEEEcccccccc
Q psy5205 65 TPCVVFIDEIDSVGA 79 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~ 79 (113)
.|.+|||||+|.+..
T Consensus 104 ~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 104 QFDLICIDDVDAVAG 118 (242)
T ss_dssp GSSEEEEETGGGGTT
T ss_pred CCCEEEEeccccccC
Confidence 478999999999854
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=71.61 E-value=3.9 Score=28.37 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhC--CCeEEEEcccccccc
Q psy5205 53 RVRDLFKAAKDR--TPCVVFIDEIDSVGA 79 (113)
Q Consensus 53 ~l~~~F~~A~~~--~p~ilfiDEiD~l~~ 79 (113)
.+.++++...+. .|.+|+|||++.+..
T Consensus 123 ~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 123 SFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred hHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 345555555443 499999999999865
No 95
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=69.92 E-value=18 Score=23.14 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=12.1
Q ss_pred HhCCCeEEEEcccc
Q psy5205 62 KDRTPCVVFIDEID 75 (113)
Q Consensus 62 ~~~~p~ilfiDEiD 75 (113)
-...|.++++||++
T Consensus 96 l~~~p~llilDEig 109 (178)
T 1ye8_A 96 KKDRRKVIIIDEIG 109 (178)
T ss_dssp HHCTTCEEEECCCS
T ss_pred cccCCCEEEEeCCC
Confidence 57889999999965
No 96
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=67.92 E-value=19 Score=23.21 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=11.7
Q ss_pred CCCeEEEEccccccc
Q psy5205 64 RTPCVVFIDEIDSVG 78 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~ 78 (113)
..|.++++||.++-.
T Consensus 85 ~~~~~llLDEp~a~L 99 (173)
T 3kta_B 85 KPAPFYLFDEIDAHL 99 (173)
T ss_dssp SCCSEEEEESTTTTC
T ss_pred CCCCEEEECCCccCC
Confidence 346799999988765
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=65.11 E-value=2.1 Score=27.81 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.5
Q ss_pred CCeEEEEccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAK 80 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~ 80 (113)
.|.+++|||+-++...
T Consensus 105 ~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 105 NFALVVVDSITAHYRA 120 (220)
T ss_dssp TEEEEEEECCCCCTTG
T ss_pred CCCEEEEcCcHHHhhh
Confidence 5999999999988643
No 98
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=64.92 E-value=3.9 Score=24.37 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=15.8
Q ss_pred HHHHhCCCeEEEEccccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~ 78 (113)
++|+.+.|.|+|+||-..+.
T Consensus 72 ~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 72 EEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp HHHTTCCCEEEEECTTCCEE
T ss_pred HHHhcCCCEEEEECCCCCEE
Confidence 46778999999999965543
No 99
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=64.83 E-value=4.6 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=16.8
Q ss_pred HHHHhCCCeEEEEcccccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~ 79 (113)
++|+.+.|.|+|+||-..+..
T Consensus 70 ~e~~~~~P~vV~vd~~N~i~~ 90 (97)
T 1uhe_A 70 DEINAHKPSIVLVDEKNEILE 90 (97)
T ss_dssp HHHHHCCCEEEEECTTSCEEE
T ss_pred HHHhcCCCEEEEECCCCCEEE
Confidence 467789999999999766654
No 100
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=64.17 E-value=4.9 Score=30.62 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=19.6
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
.++|+||||++.+ ...+.+.|+..|+
T Consensus 109 ~~~IL~IDEI~r~------------~~~~q~~LL~~le 134 (500)
T 3nbx_X 109 EAEIVFLDEIWKA------------GPAILNTLLTAIN 134 (500)
T ss_dssp GCSEEEEESGGGC------------CHHHHHHHHHHHH
T ss_pred cceeeeHHhHhhh------------cHHHHHHHHHHHH
Confidence 4779999999653 1357788888886
No 101
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.70 E-value=7 Score=27.37 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=18.7
Q ss_pred CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 66 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 66 p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
+++|||||+|.+.. ...+.|+..|+.
T Consensus 97 ~g~L~LDEi~~l~~------------~~q~~Ll~~l~~ 122 (304)
T 1ojl_A 97 GGTLFLDEIGDISP------------LMQVRLLRAIQE 122 (304)
T ss_dssp TSEEEEESCTTCCH------------HHHHHHHHHHHS
T ss_pred CCEEEEeccccCCH------------HHHHHHHHHHhc
Confidence 57999999999843 244566666664
No 102
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=63.20 E-value=18 Score=25.90 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=20.8
Q ss_pred HHHhCC-CeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 60 AAKDRT-PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 60 ~A~~~~-p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
.|-... |.++++||.++-. +......+.++|..+
T Consensus 299 ~~l~~~~~~~lllDEp~~~L--------D~~~~~~l~~~l~~~ 333 (371)
T 3auy_A 299 NALIGNRVECIILDEPTVYL--------DENRRAKLAEIFRKV 333 (371)
T ss_dssp HHHHSSCCSEEEEESTTTTC--------CHHHHHHHHHHHHHC
T ss_pred HHHhcCCCCeEEEeCCCCcC--------CHHHHHHHHHHHHHh
Confidence 333567 9999999987654 333344444555554
No 103
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=62.66 E-value=5.3 Score=24.02 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=16.9
Q ss_pred HHHHhCCCeEEEEccccccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~~ 80 (113)
++|+.+.|.|+|+||=..+...
T Consensus 71 ~e~~~~~P~vv~vd~~N~i~~~ 92 (102)
T 3plx_B 71 EEAKTFKPKVVFVDENNTATKI 92 (102)
T ss_dssp HHHHHCCCEEEEECTTSCEEEE
T ss_pred HHHhcCCCEEEEECCCCcEEEE
Confidence 4677899999999995555443
No 104
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=62.36 E-value=3 Score=29.33 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=29.6
Q ss_pred HHHHHHHHHh-CCCeEEEEccccccccccCCCCCC-chhHHHHHHHHHHhcCC
Q psy5205 54 VRDLFKAAKD-RTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGF 104 (113)
Q Consensus 54 l~~~F~~A~~-~~p~ilfiDEiD~l~~~R~~~~~~-~~~~~i~~~lL~~ld~~ 104 (113)
+..+.+..++ ..+.+|+||.+.++......+..+ ......+.+++..|..+
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~l 244 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKL 244 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 4445555556 679999999999997532211111 11123556666666555
No 105
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=62.04 E-value=20 Score=25.26 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.1
Q ss_pred CCCcccccHHHHHHHHHHHHH
Q psy5205 9 TFKDVRGVDEAKQELKEIVEF 29 (113)
Q Consensus 9 ~~~di~G~~~~k~~l~~~i~~ 29 (113)
+|+++.|.+.+++.+...+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~ 43 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEA 43 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHH
Confidence 788999999888888777654
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=61.59 E-value=4.1 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCe--EEEEccccccc
Q psy5205 53 RVRDLFKAAKDRTPC--VVFIDEIDSVG 78 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~--ilfiDEiD~l~ 78 (113)
..+.+.+.+....|. ++++||..++.
T Consensus 109 ~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 109 LVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 344455555567888 99999999885
No 107
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=61.13 E-value=5.6 Score=29.37 Aligned_cols=51 Identities=2% Similarity=0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccccCCCCCC-chhHHHHHHHHHHhcCC
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH-PYANQTINQLLAEMDGF 104 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~-~~~~~i~~~lL~~ld~~ 104 (113)
+.++.+.+.+..|.+|++|++-++....-.+..+ ..-.+.+.+++..|..+
T Consensus 262 l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~l 313 (400)
T 3lda_A 262 LDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRL 313 (400)
T ss_dssp HHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHH
Confidence 3444455556789999999998887533221111 12234445555555554
No 108
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=58.44 E-value=7 Score=27.28 Aligned_cols=19 Identities=21% Similarity=-0.129 Sum_probs=13.7
Q ss_pred CCcccccHHHHHHHHHHHH
Q psy5205 10 FKDVRGVDEAKQELKEIVE 28 (113)
Q Consensus 10 ~~di~G~~~~k~~l~~~i~ 28 (113)
++++.|.+.+++.+...+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~ 44 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGIC 44 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHH
T ss_pred ccceeCcHHHHHHHHHHHH
Confidence 4678888888877766543
No 109
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.95 E-value=5.6 Score=28.84 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.9
Q ss_pred HHHhCCCeEEEEccccccccc
Q psy5205 60 AAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 60 ~A~~~~p~ilfiDEiD~l~~~ 80 (113)
.++...+.+|+||.+.++...
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~ 156 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPK 156 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCH
T ss_pred HHhccCCCEEEEcCHHHhcch
Confidence 334678999999999999853
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=55.94 E-value=23 Score=23.10 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 52 ~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
...+.+...+....|.++++||.-+......+ ....++.+..++..+.
T Consensus 122 ~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d---~~~~~~~l~~l~~~l~ 169 (251)
T 2ehv_A 122 NFLRYIYRVVKAINAKRLVIDSIPSIALRLEE---ERKIREVLLKLNTILL 169 (251)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS---GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 34455555666789999999999888753221 2233455666666653
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=55.36 E-value=11 Score=23.43 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=11.8
Q ss_pred CCeEEEEccccccc
Q psy5205 65 TPCVVFIDEIDSVG 78 (113)
Q Consensus 65 ~p~ilfiDEiD~l~ 78 (113)
.|.+|++||++.+.
T Consensus 83 ~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 83 EAEYLAVDQVEKLG 96 (149)
T ss_dssp GCSEEEEESTTCCC
T ss_pred CCCEEEEeCccccC
Confidence 58899999998864
No 112
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.30 E-value=4.7 Score=28.84 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=20.1
Q ss_pred HHHHHHHHHh--CCCeEEEEccccccccc
Q psy5205 54 VRDLFKAAKD--RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 54 l~~~F~~A~~--~~p~ilfiDEiD~l~~~ 80 (113)
+..+.+.+++ ..+.+|+||.+.++...
T Consensus 206 l~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 206 LDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 3344555666 78999999999999843
No 113
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.15 E-value=4.3 Score=26.44 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHHHHHHH-----hCCCeEEEEccccccccc
Q psy5205 54 VRDLFKAAK-----DRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 54 l~~~F~~A~-----~~~p~ilfiDEiD~l~~~ 80 (113)
+..+.+.+. ...|.++++||.-+....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 344444444 678999999999887543
No 114
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=53.01 E-value=42 Score=21.73 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 54 l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
...+-+.+++..|.++++|++..+... . .....+.+..+...+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~----~-~~~~~~~l~~l~~~~ 159 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYIN----K-PAMARSIILQLKRVL 159 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTT----C-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcC----C-HHHHHHHHHHHHHHH
Confidence 334444445578999999999998621 1 123345566666554
No 115
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=51.63 E-value=7.2 Score=30.22 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=19.1
Q ss_pred CeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcC
Q psy5205 66 PCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103 (113)
Q Consensus 66 p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~ 103 (113)
.+|+||||+|.+.. ...+.|+..|+.
T Consensus 392 ~gil~IDEid~l~~------------~~q~~Ll~~le~ 417 (595)
T 3f9v_A 392 GGIAVIDEIDKMRD------------EDRVAIHEAMEQ 417 (595)
T ss_dssp SSEECCTTTTCCCS------------HHHHHHHHHHHS
T ss_pred CCcEEeehhhhCCH------------hHhhhhHHHHhC
Confidence 48999999998732 345677777764
No 116
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=50.43 E-value=31 Score=25.14 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=12.5
Q ss_pred CCCeEEEEccccccc
Q psy5205 64 RTPCVVFIDEIDSVG 78 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~ 78 (113)
..|.++++||.++-.
T Consensus 354 ~~~~~lllDEp~~~L 368 (430)
T 1w1w_A 354 QPSPFFVLDEVDAAL 368 (430)
T ss_dssp SCCSEEEESSTTTTC
T ss_pred CCCCEEEeCCCcccC
Confidence 568999999987765
No 117
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=49.91 E-value=10 Score=24.75 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=12.0
Q ss_pred HhCCCeEEEEcccccc
Q psy5205 62 KDRTPCVVFIDEIDSV 77 (113)
Q Consensus 62 ~~~~p~ilfiDEiD~l 77 (113)
....|.|+++||++.+
T Consensus 102 ~~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 102 SGPGQRVCVIDEIGKM 117 (189)
T ss_dssp CSSCCCCEEECCCSTT
T ss_pred hccCCCEEEEeCCCcc
Confidence 3567999999997433
No 118
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=49.57 E-value=19 Score=25.35 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|.+++...++++-+.|+++ .++++.||+.+-+
T Consensus 175 NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~ 209 (385)
T 1b5p_A 175 NPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHL 209 (385)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHc-CCEEEEEccchhc
Confidence 4678877889999999999776 4889999997754
No 119
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=48.96 E-value=34 Score=23.30 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCeEEEEcccccccc
Q psy5205 56 DLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 56 ~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.+-..|....|.+|++||.-++..
T Consensus 138 ~~~a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 138 KLAYMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHHHTTCCSEEEEEEEC----
T ss_pred HHHHHHHhcCCCEEEEcCccccCC
Confidence 333445678899999999988763
No 120
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=47.91 E-value=21 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++ ...++.||+.+-+
T Consensus 201 ~NPtG~~~~~~~l~~l~~~a~~~-~~~li~De~~~~~ 236 (425)
T 2r2n_A 201 NNPTGNSLTSERKKEIYELARKY-DFLIIEDDPYYFL 236 (425)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGG
T ss_pred cCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCcccc
Confidence 45778888999999999999776 4789999998743
No 121
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=47.76 E-value=10 Score=24.11 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHhCCCeEEEEcccccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~ 79 (113)
++|+...|.|+|+||-..+..
T Consensus 113 ~E~~~~~P~VV~vd~~N~i~~ 133 (143)
T 1pqh_A 113 EEARTWRPNVAYFEGDNEMKR 133 (143)
T ss_dssp HHHTTCCCEEEEEETTTEECC
T ss_pred HHhccCCCeEEEECCCCCEEE
Confidence 467789999999999766654
No 122
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=47.00 E-value=48 Score=23.70 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=21.8
Q ss_pred HHHHHhCCC--eEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 58 FKAAKDRTP--CVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 58 F~~A~~~~p--~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..|-...| .+|++||.++=. +......+.++|..+
T Consensus 306 lA~~l~~~~~~~~LlLDEpt~~L--------D~~~~~~l~~~L~~l 343 (415)
T 4aby_A 306 LAVSTVLGADTPSVVFDEVDAGI--------GGAAAIAVAEQLSRL 343 (415)
T ss_dssp HHHHHHHCCSSSEEEESSTTTTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEECCCCCC--------CHHHHHHHHHHHHHH
Confidence 334445677 999999987644 333344555555555
No 123
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=46.50 E-value=10 Score=24.04 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=15.4
Q ss_pred HHHHhCCCeEEEEcccccccc
Q psy5205 59 KAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD~l~~ 79 (113)
++|+.+.|.|+|+||-..+..
T Consensus 96 ~E~~~~~P~vV~vd~~N~i~~ 116 (139)
T 2c45_A 96 ARARTYQPRIVFVDAYNKPID 116 (139)
T ss_dssp HHHHSCCCEEEECCTTCC---
T ss_pred HHhccCCCeEEEECCCCCEEE
Confidence 467789999999999766654
No 124
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=46.26 E-value=18 Score=26.08 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=28.4
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.|.|..++...++++-+.|+++. +++++||+-+.+.
T Consensus 220 NPtG~~~~~~~l~~l~~l~~~~~-~~li~Dea~~~~~ 255 (449)
T 3qgu_A 220 NPTGAAATRAQLTELVNFARKNG-SILVYDAAYALYI 255 (449)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTGGGC
T ss_pred CCCCCcCCHHHHHHHHHHHHHCC-cEEEEEcchHhhh
Confidence 35666668888999999997764 8899999988754
No 125
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.93 E-value=39 Score=23.58 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=18.2
Q ss_pred CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 64 RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
..|.++++||..+-. +......+..++..+
T Consensus 240 ~~~~~lllDEp~~~L--------D~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 240 KPSPFYVLDEVDSPL--------DDYNAERFKRLLKEN 269 (322)
T ss_dssp SCCSEEEEESCCSSC--------CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCC--------CHHHHHHHHHHHHHh
Confidence 467899999976544 223334444555555
No 126
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=45.87 E-value=16 Score=24.88 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~ 80 (113)
++..++.+-..+ ..|.+|+|||.-++.+.
T Consensus 120 s~g~~~~i~~l~--~~~~livlDe~~~~~~~ 148 (279)
T 1nlf_A 120 APEWFDGLKRAA--EGRRLMVLDTLRRFHIE 148 (279)
T ss_dssp SHHHHHHHHHHH--TTCSEEEEECGGGGCCS
T ss_pred CHHHHHHHHHhc--CCCCEEEECCHHHhcCC
Confidence 555555554333 36999999999987643
No 127
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=44.87 E-value=23 Score=24.66 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 174 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 210 (391)
T 4dq6_A 174 HNPVGRVWTKDELKKLGDICLKHN-VKIISDEIHSDII 210 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcC-CEEEeeccccccc
Confidence 346788888888999999997764 8899999987654
No 128
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=44.67 E-value=61 Score=22.33 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.+|++||-
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECc
Confidence 3444455666777788999999993
No 129
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=44.65 E-value=28 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 170 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 206 (389)
T 1gd9_A 170 CNPTGAVLTKKDLEEIADFVVEHD-LIVISDEVYEHFI 206 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcC-CEEEEehhhhhcc
Confidence 346788888889999999997764 8899999988754
No 130
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=44.59 E-value=21 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++.+.|+++. .+++.||+..-+
T Consensus 185 ~NPtG~~~~~~~l~~i~~~~~~~~-~~li~Deay~~~ 220 (401)
T 7aat_A 185 HNPTGVDPRQEQWKELASVVKKRN-LLAYFDMAYQGF 220 (401)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CEEEEEESCTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-cEEEEccccccc
Confidence 346777779999999999997764 889999986543
No 131
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=43.63 E-value=22 Score=25.18 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++ .++++.||+.+-+
T Consensus 193 ~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~ 228 (409)
T 4eu1_A 193 HNPTGVDPTHDDWRQVCDVIKRR-NHIPFVDMAYQGF 228 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccccc
Confidence 45678888999999999999776 4899999986544
No 132
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=43.54 E-value=31 Score=24.01 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=29.6
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 169 nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 204 (376)
T 2dou_A 169 NPTGAVADWGYFEEALGLARKHG-LWLIHDNPYVDQV 204 (376)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTGGGB
T ss_pred CCcCccCCHHHHHHHHHHHHHcC-CEEEEEccchhcc
Confidence 46788888889999999997765 7888999988764
No 133
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=43.12 E-value=17 Score=26.37 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.-|.|..++...++++.+.|+++. .+++.||+=.
T Consensus 184 ~NPTG~~~s~~~~~~l~~~~~~~~-~~vi~De~Y~ 217 (405)
T 3k7y_A 184 YNPCSVNIEEKYFDEIIEIVLHKK-HVIIFDIAYQ 217 (405)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHC-CEEEEEESCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-eEEEEecCcc
Confidence 467899999999999999997764 7888998744
No 134
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=42.97 E-value=18 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++.+.|+++. .+++.||+..-+.
T Consensus 245 ~NPTG~v~s~~~l~~i~~la~~~~-~~li~De~y~~~~ 281 (498)
T 3ihj_A 245 GNPTGQVQSRKCIEDVIHFAWEEK-LFLLADEVYQDNV 281 (498)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcC-cEEEEEcCccccc
Confidence 457888889999999999997764 8889999977543
No 135
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=42.93 E-value=84 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-..+.|-...|.+|++||-
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEP 190 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQA 190 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3444555566666788999999994
No 136
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=42.84 E-value=26 Score=24.54 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++.+.|+++ .+++++||+.+-+
T Consensus 183 ~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~ 218 (397)
T 3fsl_A 183 HNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGF 218 (397)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTS
T ss_pred CCCCCcCCCHHHHHHHHHHHHhC-CEEEEEecCchhh
Confidence 45678888889999999999776 5899999986544
No 137
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=42.79 E-value=29 Score=24.18 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|.+++.+.++++.+.++ ..+.+++||+.+-+.
T Consensus 156 ~nptG~~~~~~~l~~l~~~~~--~~~~li~De~~~~~~ 191 (356)
T 1fg7_A 156 NNPTGQLINPQDFRTLLELTR--GKAIVVADEAYIEFC 191 (356)
T ss_dssp CTTTCCCCCHHHHHHHHHHHT--TTCEEEEECTTGGGS
T ss_pred CCCCCCCCCHHHHHHHHHhCC--CCCEEEEEccchhhc
Confidence 356788888899999998886 568999999988554
No 138
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=42.50 E-value=23 Score=27.19 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=14.8
Q ss_pred CCCCCcccccHHHHHHHHHHHH
Q psy5205 7 NITFKDVRGVDEAKQELKEIVE 28 (113)
Q Consensus 7 ~~~~~di~G~~~~k~~l~~~i~ 28 (113)
...|++++|.+.+++.+...+.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~ 58 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAAN 58 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHH
T ss_pred ccccceEECchhhHhhcccccc
Confidence 3456778888877776666553
No 139
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=42.32 E-value=77 Score=21.56 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEP 191 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDES 191 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 4444455566777789999999994
No 140
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=41.03 E-value=70 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+..+=|-.++.|-...|.+|++||
T Consensus 141 GGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeC
Confidence 445556667777788999999999
No 141
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=40.90 E-value=20 Score=26.63 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=29.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++.+.|+++. .+++.||+-.-+
T Consensus 247 ~NPtG~~~s~~~l~~i~~la~~~~-~~li~Deay~~~ 282 (500)
T 3tcm_A 247 GNPTGQVLAEENQYDIVKFCKNEG-LVLLADEVYQEN 282 (500)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTC
T ss_pred CCCCcccCCHHHHHHHHHHHHHcC-CEEEEecCcccc
Confidence 357888899999999999997764 899999986653
No 142
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=40.86 E-value=20 Score=25.67 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.4
Q ss_pred CCCeEEEEccccccccc
Q psy5205 64 RTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 64 ~~p~ilfiDEiD~l~~~ 80 (113)
..|.+|++||+-++...
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 68999999999888743
No 143
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=40.85 E-value=75 Score=21.36 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+=|-.++.|-...|.++++||--+-. +......+-+++.++
T Consensus 148 gGq~qRv~iAraL~~~p~lllLDEPts~L--------D~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 148 GGQRQRIAIARALVNNPKILIFDEATSAL--------DYESEHVIMRNMHKI 191 (247)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHH
Confidence 44555556677778899999999943221 334445555555555
No 144
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=40.32 E-value=25 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.9
Q ss_pred CceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 44 PKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 44 ~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
|.|..++...++++.+.|+++. +++++||+-+-+
T Consensus 210 PtG~~~~~~~l~~l~~la~~~~-~~li~Dea~~~~ 243 (432)
T 3ei9_A 210 PTGAAATREQLTQLVEFAKKNG-SIIVYDSAYAMY 243 (432)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHcC-cEEEEccchHhh
Confidence 4566668888999999997764 888999998854
No 145
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=40.22 E-value=33 Score=23.72 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 160 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 196 (377)
T 3fdb_A 160 YNPLGMVFAPEWLNELCDLAHRYD-ARVLVDEIHAPLV 196 (377)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTT-CEEEEECTTGGGB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CEEEEEcccchhh
Confidence 346788888888999999997764 8889999987754
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=40.01 E-value=16 Score=27.06 Aligned_cols=20 Identities=10% Similarity=0.224 Sum_probs=16.1
Q ss_pred HHhCCCeEEEEccccccccc
Q psy5205 61 AKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 61 A~~~~p~ilfiDEiD~l~~~ 80 (113)
++++.|.+++||++..+...
T Consensus 309 ~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 309 KQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HTTTCCCEEEEECGGGSCCS
T ss_pred HHHcCCCEEEEccHHHhccC
Confidence 34578999999999998753
No 147
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=39.75 E-value=70 Score=21.47 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
..+=|-.+..|-...|.++++||--+-. +......+-++|..+
T Consensus 147 GqkQrv~iAraL~~~p~lllLDEPts~L--------D~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 147 GEKKRNEILQLLVLEPTYAVLDETDSGL--------DIDALKVVARGVNAM 189 (250)
T ss_dssp -HHHHHHHHHHHHHCCSEEEEECGGGTT--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHH
Confidence 3344455666667899999999953322 333444555555555
No 148
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=39.65 E-value=31 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|.+++...++++-+.|+++. ..+++||+-+.+.
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 206 (391)
T 3dzz_A 170 HNPIGYAWSEEEVKRIAELCAKHQ-VLLISDEIHGDLV 206 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCcccCHHHHHHHHHHHHHCC-CEEEEeccccccc
Confidence 356788888889999999997764 8889999977543
No 149
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=39.62 E-value=31 Score=24.41 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=29.5
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
...|.|..++...++++-+.|+++. +.+++||+..-+
T Consensus 185 p~nPtG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~ 221 (412)
T 1yaa_A 185 AHNPTGLDPTSEQWVQIVDAIASKN-HIALFDTAYQGF 221 (412)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTT-CEEEEEESCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEecccccc
Confidence 3456788889999999999997764 889999987543
No 150
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=39.55 E-value=33 Score=24.03 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=28.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.|.|.+++...++++-+.|+++. ..+++||+.+.+.
T Consensus 172 nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 207 (391)
T 3h14_A 172 NPTGTMLDHAAMGALIEAAQAQG-ASFISDEIYHGIE 207 (391)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCccCCHHHHHHHHHHHHHcC-CEEEEECcchhcc
Confidence 35677778888999999997764 8888999887543
No 151
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=39.49 E-value=25 Score=25.28 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. .++++||+-+-+.
T Consensus 201 ~nptG~~~~~~~l~~i~~~~~~~~-~~~i~Deay~~~~ 237 (427)
T 3dyd_A 201 SNPCGSVFSKRHLQKILAVAARQC-VPILADEIYGDMV 237 (427)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CCEEEECTTTTCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEcCchhhc
Confidence 346777778888999999997764 8889999877643
No 152
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=39.42 E-value=34 Score=24.44 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=30.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 198 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 234 (425)
T 1vp4_A 198 HNPAGVTTSLEKRKALVEIAEKYD-LFIVEDDPYGALR 234 (425)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CEEEEECSSTTCB
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcC-CEEEEECCCcccc
Confidence 456788889899999999997764 7888999988754
No 153
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=39.30 E-value=24 Score=23.70 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHHHHHHHh----CCCeEEEEcccccc
Q psy5205 55 RDLFKAAKD----RTPCVVFIDEIDSV 77 (113)
Q Consensus 55 ~~~F~~A~~----~~p~ilfiDEiD~l 77 (113)
.++++.+++ ..|.+|+|||+..+
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFF 101 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGS
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccC
Confidence 446666654 35889999999764
No 154
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=39.25 E-value=30 Score=24.49 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.3
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++-+.|+++. .++++||+-+-+
T Consensus 174 nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~ 208 (400)
T 3asa_A 174 NPTGTVLNKDQLRAIVHYAIEHE-ILILFDAAYSTF 208 (400)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTGGG
T ss_pred CCCCCcCCHHHHHHHHHHHHHcC-CEEEEEchhhhh
Confidence 35666668888999999997764 788899998843
No 155
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=39.17 E-value=87 Score=21.10 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=+-.++.|-...|.++++||-
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEP 180 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEP 180 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4444455666777889999999993
No 156
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=39.04 E-value=28 Score=24.97 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++.+.|+++. ..+++||+.+.+
T Consensus 202 nptG~~~~~~~l~~l~~~~~~~~-~~li~Dea~~~~ 236 (435)
T 3piu_A 202 NPLGTTMTRNELYLLLSFVEDKG-IHLISDEIYSGT 236 (435)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CEEEEecccccc
Confidence 46788888888999999997764 889999998764
No 157
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=38.53 E-value=34 Score=25.75 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|++....++++||+.+-+
T Consensus 254 ~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~ 290 (533)
T 3f6t_A 254 TNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAF 290 (533)
T ss_dssp CTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGG
T ss_pred CCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcccc
Confidence 3567888889999999999975556899999997643
No 158
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=38.08 E-value=29 Score=24.33 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=29.7
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
...|.|..++...++++-+.|+++. .++++||+-+.+
T Consensus 178 ~~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~ 214 (394)
T 2ay1_A 178 CHNPTGANLTLDQWAEIASILEKTG-ALPLIDLAYQGF 214 (394)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHT-CEEEEEECCTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEecCcccc
Confidence 3456788889999999999997764 788999987754
No 159
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=37.88 E-value=26 Score=24.98 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++. .++++||+-.-+
T Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~-~~li~De~y~~~ 240 (420)
T 4f4e_A 205 HNPTGVDLNDAQWAQVVEVVKARR-LVPFLDIAYQGF 240 (420)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEEESCTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-cEEEEccccccc
Confidence 456788888899999999997764 888899985443
No 160
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=37.64 E-value=41 Score=23.83 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.3
Q ss_pred CceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 44 PKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 44 ~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 186 ptG~~~~~~~l~~i~~~~~~~~-~~li~Dea~~~~~ 220 (409)
T 2gb3_A 186 PTGVVYGKDEMRYLVEIAERHG-LFLIVDEVYSEIV 220 (409)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCcCHHHHHHHHHHHHHcC-CEEEEECcccccc
Confidence 5677777888999999997764 8889999988754
No 161
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=37.61 E-value=24 Score=25.98 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=28.8
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
-|.|..++...++++.+.++++. .+++.||+-.-+
T Consensus 201 NPtG~~~~~~~~~~i~~~~~~~~-~~~~~D~~Y~~~ 235 (420)
T 4h51_A 201 NPTGVDPSQEQWNEIASLMLAKH-HQVFFDSAYQGY 235 (420)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHT-CEEEEEESCTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-ceEeeehhhhhh
Confidence 46788889999999999997664 888999987644
No 162
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=37.57 E-value=27 Score=24.19 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+-+.+.
T Consensus 166 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 202 (383)
T 3kax_A 166 HNPIGRVWKKEELTKLGSLCTKYN-VIVVADEIHSDII 202 (383)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCcCcCHHHHHHHHHHHHHCC-CEEEEEccccccc
Confidence 346788888889999999997764 8888999977654
No 163
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=37.47 E-value=35 Score=24.28 Aligned_cols=36 Identities=14% Similarity=-0.015 Sum_probs=29.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++. +.+++||+.+.+
T Consensus 192 ~nptG~~~~~~~l~~i~~~a~~~~-~~li~De~~~~~ 227 (437)
T 3g0t_A 192 NNPTWQCMTDEELRIIGELATKHD-VIVIEDLAYFGM 227 (437)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHCC-cEEEEEcchhhc
Confidence 356788888888999999997764 889999998753
No 164
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=37.02 E-value=34 Score=31.61 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=19.7
Q ss_pred CCeEEEEccccccccccCCCCCCchhHHHHHHHH
Q psy5205 65 TPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLL 98 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL 98 (113)
.++|+||||+|.-...+.++ +....++.+++
T Consensus 1336 k~~VlFiDEinmp~~d~yg~---q~~lelLRq~l 1366 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGS---QNVVLFLRQLM 1366 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSC---CHHHHHHHHHH
T ss_pred ceEEEEecccccccccccCc---hhHHHHHHHHH
Confidence 35899999999755554432 23445566655
No 165
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=36.94 E-value=36 Score=23.58 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.|.|..++...++++-+.|+++. ..+++||+-+.+.
T Consensus 157 nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 192 (364)
T 1lc5_A 157 NPTGLLPERPLLQAIADRCKSLN-INLILDEAFIDFI 192 (364)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTGGGS
T ss_pred CCCCCCCCHHHHHHHHHHhhhcC-cEEEEECcChhhc
Confidence 46788888889999999987654 7889999987653
No 166
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=36.86 E-value=89 Score=22.51 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.+..|-...|.++++||-
T Consensus 148 GGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 148 GGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4444455666777788999999993
No 167
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=36.86 E-value=32 Score=24.03 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 178 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 214 (396)
T 3jtx_A 178 NNPSGSVLDLDGWKEVFDLQDKYG-FIIASDECYSEIY 214 (396)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHC-CEEEEECTTTTCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcC-CEEEEEccccccc
Confidence 346788888888999999997764 7889999977653
No 168
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=36.60 E-value=36 Score=23.85 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=29.5
Q ss_pred CCCceeechHHHHHHHHHHHHhC-----CCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDR-----TPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~-----~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|++. ....+++||+.+.+.
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~ 224 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccc
Confidence 34678888888899988888761 468899999987654
No 169
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=36.52 E-value=25 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=8.5
Q ss_pred CCeEEEEccccccc
Q psy5205 65 TPCVVFIDEIDSVG 78 (113)
Q Consensus 65 ~p~ilfiDEiD~l~ 78 (113)
...++++||+|.+.
T Consensus 162 ~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 162 DFSLIIIDECHHTN 175 (216)
T ss_dssp GCSEEEETTC----
T ss_pred cccEEEEECchhhc
Confidence 45799999999985
No 170
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=36.32 E-value=37 Score=23.76 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 174 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 210 (399)
T 1c7n_A 174 HNPVGRVWKKDELQKIKDIVLKSD-LMLWSDEIHFDLI 210 (399)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHSS-CEEEEECTTTTCB
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcC-CEEEEEccccccc
Confidence 346788888889999999997765 7888999988653
No 171
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=36.18 E-value=31 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 189 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~Dea~~~~~ 225 (407)
T 3nra_A 189 NNPAGVVYSAEEIGQIAALAARYG-ATVIADQLYSRLR 225 (407)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTSB
T ss_pred CCCCCcccCHHHHHHHHHHHHHcC-CEEEEEccccccc
Confidence 456788888888999999997764 8889999988653
No 172
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=36.08 E-value=39 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. .+++.||+-+.+.
T Consensus 211 ~nptG~~~~~~~l~~i~~l~~~~~-~~li~De~~~~~~ 247 (447)
T 3b46_A 211 HNPIGKVFTREELTTLGNICVKHN-VVIISDEVYEHLY 247 (447)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCcccCHHHHHHHHHHHHHcC-cEEEEeccchhcc
Confidence 346788888899999999997764 8899999987643
No 173
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=36.03 E-value=30 Score=24.20 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=28.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++. .+++.||+-+-+
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~ 217 (396)
T 2q7w_A 182 HNPTGIDPTLEQWQTLAQLSVEKG-WLPLFDFAYQGF 217 (396)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEEESCTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-CEEEEecccccc
Confidence 346788888899999999997754 788999986644
No 174
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=35.97 E-value=36 Score=23.60 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=29.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 164 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 200 (376)
T 3ezs_A 164 NNPTGRTLSLEELISWVKLALKHD-FILINDECYSEIY 200 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCcCCCCCHHHHHHHHHHHHHcC-cEEEEEccchhhc
Confidence 356788888888999999887764 7888999987654
No 175
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=35.89 E-value=45 Score=23.57 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. +++++||+-+.+.
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 206 (411)
T 2o0r_A 170 HNPTGAVLSATELAAIAEIAVAAN-LVVITDEVYEHLV 206 (411)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CEEEEEccccccc
Confidence 346788888889999999997764 8889999988654
No 176
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=35.88 E-value=33 Score=24.28 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=29.7
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 218 (412)
T 2x5d_A 182 SNPTAQCVELDFFERVVALAKQYD-VMVVHDLAYADIV 218 (412)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcC-CEEEEeccccccc
Confidence 346788888889999999997764 7888999988764
No 177
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=35.83 E-value=35 Score=23.94 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=29.4
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. .++++||+-+.+.
T Consensus 177 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 213 (410)
T 3e2y_A 177 HNPLGKVYTRQELQVIADLCVKHD-TLCISDEVYEWLV 213 (410)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcC-cEEEEEhhhhhcc
Confidence 346777778889999999997764 8889999987543
No 178
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=35.69 E-value=78 Score=19.57 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=11.7
Q ss_pred HHHhCCCeEEEEccc
Q psy5205 60 AAKDRTPCVVFIDEI 74 (113)
Q Consensus 60 ~A~~~~p~ilfiDEi 74 (113)
.|-...|.++++||-
T Consensus 76 ral~~~p~lllLDEP 90 (148)
T 1f2t_B 76 LYLAGEISLLILDEP 90 (148)
T ss_dssp HHHHSSCSEEEEESC
T ss_pred HHHcCCCCEEEEECC
Confidence 344578999999994
No 179
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=35.63 E-value=35 Score=24.25 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. .++++||+.+.+.
T Consensus 192 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 228 (429)
T 1yiz_A 192 HNPLGKVMDRAELEVVANLCKKWN-VLCVSDEVYEHMV 228 (429)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCccCCHHHHHHHHHHHHHcC-cEEEEeccccccc
Confidence 456788888889999999997764 7888999987543
No 180
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=35.58 E-value=30 Score=24.40 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++. .++++||+-+-+
T Consensus 193 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~y~~~ 228 (412)
T 1ajs_A 193 HNPTGTDPTPEQWKQIASVMKRRF-LFPFFDSAYQGF 228 (412)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEEESCTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEcccccc
Confidence 356788889999999999997754 789999985533
No 181
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=35.51 E-value=42 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++ ...++.||+.+.+
T Consensus 164 ~nptG~~~~~~~l~~i~~la~~~-~~~li~De~~~~~ 199 (375)
T 3op7_A 164 NNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYRSF 199 (375)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccc
Confidence 35677777888899999999665 5889999997654
No 182
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=35.37 E-value=97 Score=22.20 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 143 GGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 143 GAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4445556667777889999999993
No 183
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=35.17 E-value=32 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.|.|..++...++++-+.|+++. ..++.||+-+
T Consensus 191 NptG~~~~~~~~~~l~~~a~~~~-~~li~De~~~ 223 (417)
T 3g7q_A 191 NPTGNVITDEELMKLDRLANQHN-IPLVIDNAYG 223 (417)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTT-CCEEEECTTC
T ss_pred CCCCCccCHHHHHHHHHHHHHcC-CEEEEeCCCc
Confidence 35666668888999999997764 7888999865
No 184
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=35.05 E-value=1.1e+02 Score=20.91 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+=|-.++.|-...|.++++||-=+- -+...+..+-+++..+
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~--------LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSA--------LDPEMVGEVLSVMKQL 205 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT--------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc--------CCHHHHHHHHHHHHHH
Confidence 3444455667777889999999993221 1334444555555555
No 185
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=35.04 E-value=37 Score=24.00 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. .++++||+-+.+.
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 220 (422)
T 3fvs_A 184 NNPLGKVFSREELELVASLCQQHD-VVCITDEVYQWMV 220 (422)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcC-cEEEEEccchhhc
Confidence 346788788889999999997764 8888999987643
No 186
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=34.88 E-value=1e+02 Score=22.31 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.+..|-...|.++++||-
T Consensus 142 GGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 142 GGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4455566677777889999999993
No 187
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=34.65 E-value=39 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++-+.|+++ ..++++||+-+.+
T Consensus 199 nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~ 233 (428)
T 1iay_A 199 NPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAAT 233 (428)
T ss_dssp TTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGG
T ss_pred CCCCCcCCHHHHHHHHHHHHHC-CeEEEEecccccc
Confidence 4678888999999999998665 4889999998864
No 188
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=34.31 E-value=31 Score=25.09 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
...|.|..++...++++.+.|+++. .+++.||+.+.+.
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~-~~lI~De~y~~~~ 263 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYD-FIVVEDDPYGELR 263 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECSCTTCB
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcC-CEEEEECCCcccc
Confidence 3456888889999999999997764 7888999988764
No 189
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=34.01 E-value=1.1e+02 Score=20.93 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEP 188 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEP 188 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3444455666777889999999994
No 190
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=33.94 E-value=40 Score=23.71 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=29.2
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
.|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 185 nptG~~~~~~~l~~l~~~~~~~~-~~li~Dea~~~~~ 220 (389)
T 1o4s_A 185 NPTGVVYRREFLEGLVRLAKKRN-FYIISDEVYDSLV 220 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTSB
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CEEEEEccccccc
Confidence 46788778889999999997764 7889999988654
No 191
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=33.86 E-value=49 Score=23.00 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 162 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 198 (381)
T 1v2d_A 162 MNPTGLVFGERELEAIARLARAHD-LFLISDEVYDELY 198 (381)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCCccCHHHHHHHHHHHHHcC-CEEEEEcCccccc
Confidence 345777778888999999997764 8889999987653
No 192
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=33.85 E-value=73 Score=21.24 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.+..|-...|.++++||-
T Consensus 130 gGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 130 GGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3444455666777789999999994
No 193
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=33.81 E-value=1.3e+02 Score=21.70 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+=|-.+..|-...|.++++||-
T Consensus 147 ~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 147 RQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp HHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHhcCCCEEEEcCC
Confidence 3445566666788999999993
No 194
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=33.65 E-value=35 Score=23.90 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 172 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 208 (390)
T 1d2f_A 172 QNPTGKVWTCDELEIMADLCERHG-VRVISDEIHMDMV 208 (390)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTT-CEEEEECTTTTCB
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcC-CEEEEEccccccc
Confidence 456788888888999999987764 7888999988653
No 195
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=33.37 E-value=87 Score=22.88 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+..+=|-..+.|-...|.+|++||
T Consensus 136 GGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 136 GGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEC
Confidence 444555566666678899999999
No 196
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=33.12 E-value=45 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.4
Q ss_pred CCCceeechHHHHHHHHHHHHh-----CCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKD-----RTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~-----~~p~ilfiDEiD~l~ 78 (113)
..|.|..++.+.++++-+.|++ ....++++||+..-+
T Consensus 189 ~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~ 230 (413)
T 3t18_A 189 NNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEF 230 (413)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccc
Confidence 4678999999999999998873 456899999996443
No 197
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=33.04 E-value=47 Score=23.53 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=29.8
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++ ...+++||+.+.+.
T Consensus 191 ~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~ 227 (404)
T 2o1b_A 191 NNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFG 227 (404)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTS-SCEEEEECTTTTCB
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcc
Confidence 34678888888999999999665 47889999988753
No 198
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=32.48 E-value=44 Score=23.30 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. +.+++||+.+.+.
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~~ 209 (388)
T 1j32_A 173 SNPTGMVYTPDEVRAIAQVAVEAG-LWVLSDEIYEKIL 209 (388)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcC-CEEEEEccchhcc
Confidence 346788888889999999997764 7889999977543
No 199
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=32.34 E-value=32 Score=24.96 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=28.6
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
..|.|..++...++++-+.|+++ ..++++||+-.-
T Consensus 212 ~NPtG~~~~~~~l~~i~~l~~~~-~~~li~Deay~~ 246 (448)
T 3meb_A 212 HNPSGIDFTEAQWKELLPIMKEK-KHIAFFDSAYQG 246 (448)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHC-CCEEEEeccccc
Confidence 45678888999999999999776 489999998553
No 200
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=32.04 E-value=43 Score=23.72 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=28.4
Q ss_pred CCCceeechHHHHHHHHHHHHh-----CCCeEEEEccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKD-----RTPCVVFIDEIDS 76 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~-----~~p~ilfiDEiD~ 76 (113)
..|.|..++.+.++++-+.|++ ....++++||+-.
T Consensus 190 ~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~ 229 (418)
T 3rq1_A 190 NNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL 229 (418)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 4578999999999999998873 4568899999864
No 201
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=31.99 E-value=97 Score=22.37 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 136 GGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 136 GGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECc
Confidence 4445556667777889999999994
No 202
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=31.78 E-value=1.1e+02 Score=20.26 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.+..|-...|.++++||-
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3444455667777889999999994
No 203
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=31.77 E-value=40 Score=23.66 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~-~~li~De~~~~~~ 209 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERG-LVVVEDDAYRELY 209 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHT-CCEEEECTTTTCB
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcC-CEEEEeCCccccc
Confidence 456788888889999999997764 7888999988764
No 204
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=31.65 E-value=43 Score=23.50 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
...|.|..++...++++-+.|+++. ..+++||+.+.+
T Consensus 184 ~~nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~ 220 (407)
T 2zc0_A 184 GQNPMGVTMSMERRKALLEIASKYD-LLIIEDTAYNFM 220 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHT-CEEEEECTTTTS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcC-CEEEEECCCccc
Confidence 3457888889888999999997764 788899998765
No 205
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=31.45 E-value=45 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 148 gGq~QRv~iAral~~~p~llllDEP 172 (235)
T 3tif_A 148 GGQQQRVAIARALANNPPIILADQP 172 (235)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4445556667777889999999994
No 206
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=31.32 E-value=34 Score=24.20 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=29.0
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++...++++-+.|+++. .++++||+.+.+
T Consensus 188 nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~ 222 (416)
T 1bw0_A 188 NPCGSNFSRKHVEDIVRLAEELR-LPLFSDEIYAGM 222 (416)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHT-CCEEEECTTTTC
T ss_pred CCCCcccCHHHHHHHHHHHHHcC-CEEEEEcccccc
Confidence 46788888889999999997764 788899998874
No 207
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=31.21 E-value=41 Score=24.06 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=27.6
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.|.|..++...++++-+.|+++. ..++.||+.+
T Consensus 217 nptG~~~~~~~l~~i~~~a~~~~-~~li~De~~~ 249 (444)
T 3if2_A 217 NPTGNVLTDEEMAHLAEIAKRYD-IPLIIDNAYG 249 (444)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTT-CCEEEECTTC
T ss_pred CCCCCcCCHHHHHHHHHHHHHCC-CEEEEECCCC
Confidence 56888888888999999997764 7888999865
No 208
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=31.01 E-value=1.2e+02 Score=20.44 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+=|-.+..|-...|.++++||--+- -+...+..+-++|..+
T Consensus 149 gGq~qRv~lAraL~~~p~lllLDEPts~--------LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 149 KGMVRKLLIARALMVNPRLAILDEPTSG--------LDVLNAREVRKILKQA 192 (256)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT--------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc--------cCHHHHHHHHHHHHHH
Confidence 4445556667777889999999994222 1334444555555555
No 209
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=30.91 E-value=27 Score=25.02 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
...|.|..++...++++-+.|++....+++.||+-+.
T Consensus 188 ~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~ 224 (422)
T 3d6k_A 188 FGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYAL 224 (422)
T ss_dssp SCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccc
Confidence 3457888889999999998886244689999999874
No 210
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=30.90 E-value=1.2e+02 Score=20.43 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+=|-.++.|-...|.++++||-=+ +-+...+..+-.++..+
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts--------~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTS--------ALDPELVGEVLRIMQQL 199 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTT--------TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCc--------cCCHHHHHHHHHHHHHH
Confidence 444445666777789999999999422 11334445555555555
No 211
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=30.81 E-value=50 Score=24.99 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=29.5
Q ss_pred CCCceeechHHHHHHHHHHHHh-CCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKD-RTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~-~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++.+.|++ ....+|+.||+.+-+.
T Consensus 255 ~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~ 293 (546)
T 2zy4_A 255 SNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFA 293 (546)
T ss_dssp CSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGS
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhc
Confidence 4567888899999999999843 3458899999987553
No 212
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=30.76 E-value=43 Score=22.95 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
.|.|..++.+.++++-+.|+++. ..+++||+.+-+
T Consensus 155 nptG~~~~~~~l~~i~~~~~~~~-~~li~De~~~~~ 189 (361)
T 3ftb_A 155 NPNGGLINKEKFIHVLKLAEEKK-KTIIIDEAFIEF 189 (361)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHT-CEEEEECSSGGG
T ss_pred CCCCCCCCHHHHHHHHHHhhhcC-CEEEEECcchhh
Confidence 46788888888999999887764 889999997644
No 213
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=30.74 E-value=65 Score=19.36 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=28.2
Q ss_pred ChhhHhhcCCCCCceeec---hHHHHHHHHHHHHhCC-CeEEEEc
Q psy5205 32 NPEKFSTLGGKLPKGVLL---GARRVRDLFKAAKDRT-PCVVFID 72 (113)
Q Consensus 32 ~~~~~~~~g~~~~~giLl---~e~~l~~~F~~A~~~~-p~ilfiD 72 (113)
+++.+..|....-.-|.| ++..+.++++.|++.+ |+.++.|
T Consensus 39 ~~~~~~~W~~~g~~KVvlk~~~e~~l~~l~~~a~~~gl~~~~i~D 83 (117)
T 1q7s_A 39 NPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQD 83 (117)
T ss_dssp CHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CHHHHHHHHhCCCeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEEE
Confidence 456666554222234455 7899999999998766 7788888
No 214
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=30.61 E-value=60 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.||++||.
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEP 217 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEA 217 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3444455566666778999999995
No 215
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=30.33 E-value=8.4 Score=23.58 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=10.2
Q ss_pred HHHHhCCCeEEEEcccc
Q psy5205 59 KAAKDRTPCVVFIDEID 75 (113)
Q Consensus 59 ~~A~~~~p~ilfiDEiD 75 (113)
++|+. .|.|+|+||-|
T Consensus 99 ~e~~~-~P~vV~vd~~~ 114 (114)
T 3oug_A 99 TRENI-KPKLVDLKTGD 114 (114)
T ss_dssp TSCCC-CCEEEECC---
T ss_pred HHHhc-CCEEEEeCCCC
Confidence 35556 89999999854
No 216
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=30.30 E-value=58 Score=22.67 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++ ...+++||+.+.+
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~ 208 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHI 208 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CcEEEEEcccccc
Confidence 45678888888999999999665 4889999998764
No 217
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=30.23 E-value=53 Score=23.37 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCCceeechHHHHHHHHHHHHhC----CCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDR----TPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~----~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|++. ...++++||+.+-+.
T Consensus 199 ~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~ 240 (430)
T 2x5f_A 199 NNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLF 240 (430)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCB
T ss_pred CCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccccc
Confidence 45678888988999999999771 358899999987654
No 218
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.18 E-value=1.3e+02 Score=21.37 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=26.4
Q ss_pred HHHHHHHHh--CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhc
Q psy5205 55 RDLFKAAKD--RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102 (113)
Q Consensus 55 ~~~F~~A~~--~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld 102 (113)
..+|..+.. ..|.++++||+..++... +......+..++.++-
T Consensus 250 ~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-----~~~~~~~l~~~~~~~R 294 (392)
T 4ag6_A 250 SFAWNILERDRRERTVLVVDEAWMLVDPQ-----TPQAIAFLRDTSKRIR 294 (392)
T ss_dssp HHHHHHHHHSCCTTCEEEETTGGGGCCTT-----CTHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCCccEEEEEecHHHHhCcC-----chHHHHHHHHHHHHhh
Confidence 445555544 459999999999998532 1223345555555544
No 219
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=29.84 E-value=43 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.++++. .++++||+-+-+.
T Consensus 204 ~nptG~~~~~~~l~~l~~l~~~~~-~~li~De~~~~~~ 240 (421)
T 3l8a_A 204 HNPGGRVWDNDDLIKIAELCKKHG-VILVSDEIHQDLA 240 (421)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHT-CEEEEECTTTTCB
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcC-CEEEEEccccccc
Confidence 446777778888999999997764 8889999976543
No 220
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=29.81 E-value=44 Score=23.59 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
..|.|..++...++++-+.|+++. ..+++||+.+.+.
T Consensus 184 ~nptG~~~~~~~l~~i~~~a~~~~-~~li~De~~~~~~ 220 (406)
T 1xi9_A 184 NNPTGALYDKKTLEEILNIAGEYE-IPVISDEIYDLMT 220 (406)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT-CCEEEECTTTTCB
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcC-CEEEEEcCccccc
Confidence 346788888889999999997764 7888999988764
No 221
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=29.32 E-value=47 Score=21.96 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.+..|-...|.++++||-
T Consensus 143 gGq~qrv~laral~~~p~lllLDEP 167 (224)
T 2pcj_A 143 GGEQQRVAIARALANEPILLFADEP 167 (224)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3444456667777889999999994
No 222
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=28.99 E-value=1.3e+02 Score=20.22 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHh
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEM 101 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~l 101 (113)
+..+=|-.++.|-...|.++++||--+-. +...+..+.+++.++
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~L--------D~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSL--------DSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTT--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccC--------CHHHHHHHHHHHHHh
Confidence 44444555666767899999999942221 334455555666665
No 223
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=28.70 E-value=30 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=28.9
Q ss_pred CCCCceeechHHHHHHHHHHH-HhCCCeEEEEcccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAA-KDRTPCVVFIDEIDSV 77 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A-~~~~p~ilfiDEiD~l 77 (113)
...|.|..++...++++-+.| +++ ...++.||+.+-
T Consensus 190 ~~NPtG~~~~~~~~~~l~~~a~~~~-~~~ii~De~y~~ 226 (427)
T 3ppl_A 190 FSNPTGFTVTEDVAKRLSAMETAAP-DFRVVWDNAYAV 226 (427)
T ss_dssp SCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcC-CCEEEEECCCcc
Confidence 346788888888899998887 655 488899998875
No 224
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=28.69 E-value=94 Score=22.42 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+..+=|-.+..|-...|.++++||
T Consensus 136 gGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 136 GGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEC
Confidence 444555666777788999999999
No 225
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=28.35 E-value=1.1e+02 Score=21.46 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=13.1
Q ss_pred HHHHHHhCCCeEEEEccc
Q psy5205 57 LFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 57 ~F~~A~~~~p~ilfiDEi 74 (113)
....|-...|.++++||-
T Consensus 264 ~~a~~l~~~p~~lllDEp 281 (339)
T 3qkt_A 264 AMSLYLAGEISLLILDEP 281 (339)
T ss_dssp HHHHHTTTTTCEEEEECC
T ss_pred HHHHHhcCCCCEEEEECC
Confidence 344455568999999994
No 226
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=28.18 E-value=45 Score=23.00 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCceeechHHHHHHHHHHHHhCC-CeEEEEccccccc
Q psy5205 42 KLPKGVLLGARRVRDLFKAAKDRT-PCVVFIDEIDSVG 78 (113)
Q Consensus 42 ~~~~giLl~e~~l~~~F~~A~~~~-p~ilfiDEiD~l~ 78 (113)
..|.|..++...++++-+.|+++. .+.+++||+-+-+
T Consensus 167 ~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~ 204 (367)
T 3euc_A 167 NNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPF 204 (367)
T ss_dssp CTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhh
Confidence 456888888889999999997663 3788899986644
No 227
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=28.14 E-value=51 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=22.9
Q ss_pred CCceeechHHHHHHHHHHHHhCCC-eEEEEccccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTP-CVVFIDEIDSVG 78 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p-~ilfiDEiD~l~ 78 (113)
.|.|..+. ++++-+.|+++.| ..+++||+.+++
T Consensus 150 nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~~~ 183 (384)
T 1eg5_A 150 NEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQTIG 183 (384)
T ss_dssp TTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred CCcccccC---HHHHHHHHHhcCCceEEEEEhhhhcC
Confidence 45676666 4555566766654 899999998854
No 228
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=27.97 E-value=60 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 133 gGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 133 GGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECc
Confidence 4444555667777889999999994
No 229
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=27.87 E-value=59 Score=21.99 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 131 gGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 131 GGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4445555667777889999999994
No 230
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=27.81 E-value=1.2e+02 Score=21.27 Aligned_cols=23 Identities=9% Similarity=0.301 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEc
Q psy5205 50 GARRVRDLFKAAKDR-TPCVVFID 72 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~-~p~ilfiD 72 (113)
+.+++.++++.|.+. -|.|.|.|
T Consensus 141 ~~~K~~r~ie~A~~~~lPlI~l~d 164 (285)
T 2f9i_B 141 IGEKICRIIDYCTENRLPFILFSA 164 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEe
Confidence 567777888888765 48888876
No 231
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=27.74 E-value=64 Score=19.71 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHH-hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEccccccccccCCCCCCchhHHHHHH
Q psy5205 18 EAKQELKEIVEF-LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQ 96 (113)
Q Consensus 18 ~~k~~l~~~i~~-~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~ 96 (113)
..++++.+.+.. +..|+.|.-..+.+...+.++. ...||.++ |+-++++ ++... .....+.+.+
T Consensus 39 ~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgG-----------s~dP~a~v--~i~sig~-~~~e~-n~~~s~~i~~ 103 (133)
T 3fwu_A 39 NLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFG-----------STDPVACV--RVEALGG-YGPSE-PEKVTSIVTA 103 (133)
T ss_dssp HHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTT-----------BCSSCEEE--EEECTTC-CCTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCccEEEEEEECCceEEECC-----------cCCCEEEE--EEEEcCC-CCHHH-HHHHHHHHHH
Confidence 345566676666 8888888666655555554422 24788766 7777755 44322 3334455566
Q ss_pred HHHHhcCCCCCC
Q psy5205 97 LLAEMDGFHQNE 108 (113)
Q Consensus 97 lL~~ld~~~~~~ 108 (113)
+|++-=|+..+.
T Consensus 104 ~l~~~LgI~~~r 115 (133)
T 3fwu_A 104 AITKECGIVADR 115 (133)
T ss_dssp HHHHHHCCCGGG
T ss_pred HHHHHhCcChhh
Confidence 666655665443
No 232
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=27.34 E-value=63 Score=23.08 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=27.0
Q ss_pred CCCCceeec----------hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 41 GKLPKGVLL----------GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 41 ~~~~~giLl----------~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
++..+|.+. +...++++|+.+.+..|-|.++|+
T Consensus 231 vP~~~g~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~v~v~~~ 273 (345)
T 2ozp_A 231 TDRVRGILMTAQCFVQDGWSERDVWQAYREAYAGEPFIRLVKQ 273 (345)
T ss_dssp CSCSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECCC
T ss_pred eccccEEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCCEEEEeC
Confidence 445566665 678999999999999999999964
No 233
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=27.30 E-value=1.5e+02 Score=20.16 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-|-.+..|-...|.++++||-
T Consensus 131 gGqkqRv~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 131 AGQSVLVRTSLALASQPEIVGLDEP 155 (263)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4445555667777899999999994
No 234
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=27.19 E-value=55 Score=21.63 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=+-.+..|-...|.++++||-
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3444455566676788999999994
No 235
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=26.91 E-value=64 Score=23.22 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=10.7
Q ss_pred CeEEEEcccccc
Q psy5205 66 PCVVFIDEIDSV 77 (113)
Q Consensus 66 p~ilfiDEiD~l 77 (113)
...||+||++.+
T Consensus 232 ~gtlfldei~~l 243 (387)
T 1ny5_A 232 GGTLFLDEIGEL 243 (387)
T ss_dssp TSEEEEESGGGC
T ss_pred CcEEEEcChhhC
Confidence 479999999998
No 236
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=26.74 E-value=1.4e+02 Score=19.67 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=30.7
Q ss_pred hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEE
Q psy5205 30 LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVV 69 (113)
Q Consensus 30 ~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~il 69 (113)
+.-...+.+.|+.|+.|--.+.+.|+++|+.|-...|.+-
T Consensus 123 ~n~~~~L~~~gI~Ps~g~~~t~~~I~~Ai~~~~g~~p~l~ 162 (217)
T 1vcz_A 123 SNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIE 162 (217)
T ss_dssp HCHHHHHHHTTCCCEEEEEEEHHHHHHHHHHHHSSCCEEE
T ss_pred cccHHHHHHCCCccCcCccccHHHHHHHHHHHHCCCeEEE
Confidence 4445677888998877777799999999998876667654
No 237
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=26.68 E-value=87 Score=18.96 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=28.6
Q ss_pred ChhhHhhcCCCCCceeec---hHHHHHHHHHHHHhCC-CeEEEEcc
Q psy5205 32 NPEKFSTLGGKLPKGVLL---GARRVRDLFKAAKDRT-PCVVFIDE 73 (113)
Q Consensus 32 ~~~~~~~~g~~~~~giLl---~e~~l~~~F~~A~~~~-p~ilfiDE 73 (113)
+++.+..|-..--.-+.| ++..+.++++.|++.+ |+.++-|-
T Consensus 43 ~~~~~~~W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DA 88 (121)
T 1wn2_A 43 KREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDA 88 (121)
T ss_dssp CHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECT
T ss_pred CHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 566666654332234444 8899999999998776 77777664
No 238
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=26.49 E-value=1.2e+02 Score=18.78 Aligned_cols=62 Identities=10% Similarity=0.209 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHHH--hcChhhHhhcCCCCCceeec-hHHHHHHHHHHHHhCC--CeEEEEcccccccc
Q psy5205 15 GVDEAKQELKEIVEF--LKNPEKFSTLGGKLPKGVLL-GARRVRDLFKAAKDRT--PCVVFIDEIDSVGA 79 (113)
Q Consensus 15 G~~~~k~~l~~~i~~--~~~~~~~~~~g~~~~~giLl-~e~~l~~~F~~A~~~~--p~ilfiDEiD~l~~ 79 (113)
+++.+.+.+++.... +.-...|...|.+- .-+ .-..+.++.+.+++.. ..+|++.++|-|+.
T Consensus 23 sl~~Q~~~l~~~a~~~g~~i~~~~~D~g~Sg---~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R 89 (167)
T 3guv_A 23 SLEAQKSRMKAFAIYNDYEIVGEYEDAGKSG---KSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFAR 89 (167)
T ss_dssp GHHHHHHHHHHHHHHTTCEEEEEEEECCCSS---SSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCS
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEEeecCCCC---CCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcC
Confidence 566777777776543 22234555444332 112 3356888888887766 67888999999974
No 239
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=26.40 E-value=22 Score=22.65 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=10.1
Q ss_pred CeEEEEccccccc
Q psy5205 66 PCVVFIDEIDSVG 78 (113)
Q Consensus 66 p~ilfiDEiD~l~ 78 (113)
+.+|+|||++...
T Consensus 116 ~~~lilDei~~~~ 128 (202)
T 2w58_A 116 VPVLMLDDLGAEA 128 (202)
T ss_dssp SSEEEEEEECCC-
T ss_pred CCEEEEcCCCCCc
Confidence 5699999997764
No 240
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1
Probab=25.73 E-value=1.2e+02 Score=19.83 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=31.0
Q ss_pred hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEE
Q psy5205 30 LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVV 69 (113)
Q Consensus 30 ~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~il 69 (113)
+.-.+.+++.|+.|+.|.-.+.+.|+++|+.|-...|.+-
T Consensus 130 ~nl~~~L~~~gI~Ps~g~~yt~~~I~~Ai~~~~g~~p~l~ 169 (212)
T 1jy5_A 130 YNISEILSESGYLPSNTAEYKVEGIMSAIQSALRVTPVVK 169 (212)
T ss_dssp SCHHHHHHTTTCCCCSSCCEEHHHHHHHHHHHHSSCCEEE
T ss_pred cCHHHHHHHcCCcCCCCceEcHHHHHHHHHHhhCCCEEEE
Confidence 4446778888998877777788999999998876667654
No 241
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=25.20 E-value=35 Score=24.34 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
|+..+...+.......-..+++||++.+..
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFVDDVDAVLK 153 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEESCHHHHHH
T ss_pred CHHHHHHHHHHhccccccEEEEeChHhhhh
Confidence 677776666666566789999999987754
No 242
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=25.15 E-value=66 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.+..|-...|.++++||-
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEP 165 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEP 165 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3444455667777889999999994
No 243
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=24.88 E-value=58 Score=22.29 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=23.6
Q ss_pred CceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 44 PKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 44 ~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
|.|..++.+.+.++-+.+.+. .+++||+-+-+.
T Consensus 141 ptG~~~~~~~l~~l~~~~~~~---~li~Dea~~~~~ 173 (350)
T 3fkd_A 141 PDGRLLQRTEILRLLNDHPDT---TFVLDQSYVSFT 173 (350)
T ss_dssp TTCCCCCHHHHHHHHHHCTTS---EEEEECTTTTSC
T ss_pred CcCCCCCHHHHHHHHHhCCCC---EEEEECchhhhc
Confidence 455556777888887766543 999999976543
No 244
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=24.84 E-value=76 Score=19.08 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHHHH--hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 15 GVDEAKQELKEIVEF--LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 15 G~~~~k~~l~~~i~~--~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
+++.+.+.+++.... +.-...|...|.+-. -..-..+.++.+.+++..-.+|++.++|-|+.
T Consensus 22 sl~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~---~~~Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R 85 (138)
T 3bvp_A 22 SIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGA---KLERPAMQRLINDIENKAFDTVLVYKLDRLSR 85 (138)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEEEETCCSS---SSCCHHHHHHHHGGGGTSCSEEEESSHHHHCS
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEeCCCcCC---CCCCHHHHHHHHHHHhCCCCEEEEEeCCcccc
Confidence 467778788776543 222345554443221 12345678888888777767888999999864
No 245
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=24.82 E-value=1.9e+02 Score=21.86 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDE 73 (113)
+..+-+-..+.|-...|.+|++||
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDE 184 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDE 184 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEC
Confidence 455556666777789999999999
No 246
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=24.66 E-value=55 Score=20.46 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
..+++.+.+..++..|.||.+-|++
T Consensus 20 ~~r~~~i~~~i~~~~pDIi~LQEv~ 44 (250)
T 4f1h_A 20 ADRARGLCSYLALYTPDVVFLQELI 44 (250)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3456677777788899999999975
No 247
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1
Probab=24.52 E-value=1.3e+02 Score=19.64 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=31.1
Q ss_pred hcChhhHhhcCCCCCceeechHHHHHHHHHHHHhCCCeEE
Q psy5205 30 LKNPEKFSTLGGKLPKGVLLGARRVRDLFKAAKDRTPCVV 69 (113)
Q Consensus 30 ~~~~~~~~~~g~~~~~giLl~e~~l~~~F~~A~~~~p~il 69 (113)
+.-++.+++.|+.|+.|--.+.+.|.++|+.+....|.+-
T Consensus 130 ~~l~~~L~~~gI~P~~g~~yt~~~I~~Ai~~~~g~~p~l~ 169 (209)
T 1sgl_A 130 YNVDKALEDAGIVASNSKMYDLKDIVVAVESAVGARPKLR 169 (209)
T ss_dssp TCHHHHHHHHTCCCCSSCEEEHHHHHHHHHHHHSSCCEEE
T ss_pred cChHHHHHHCCCcCCCCccccHHHHHHHHHHHhCCCeEEE
Confidence 4456788889999877766788999999998876667653
No 248
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=24.24 E-value=2e+02 Score=22.31 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-.++.|-...|.+|++||-
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEP 255 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEP 255 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4455555667777899999999993
No 249
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=24.09 E-value=60 Score=22.07 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.1
Q ss_pred CceeechHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 44 PKGVLLGARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 44 ~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
|.|..++...++++-+.|+++ ...+++||+.
T Consensus 156 ptG~~~~~~~l~~i~~~~~~~-~~~li~De~~ 186 (359)
T 1svv_A 156 EVGTQYTKQELEDISASCKEH-GLYLFLDGAR 186 (359)
T ss_dssp TTSCCCCHHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred CCceecCHHHHHHHHHHHHHh-CCEEEEEccc
Confidence 578888888899999999776 4888999997
No 250
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Probab=23.96 E-value=64 Score=23.21 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=28.2
Q ss_pred CCCCceeec----------hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 41 GKLPKGVLL----------GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 41 ~~~~~giLl----------~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
++.++|.+. +...++++|+.+.+..|-|.++|+-
T Consensus 249 vP~~~G~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~V~v~~~~ 292 (359)
T 1xyg_A 249 MPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEG 292 (359)
T ss_dssp ESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCSSEEECCTT
T ss_pred ecccceEEEEEEEEeCCCCCHHHHHHHHHHhhCCCCCEEEcCCC
Confidence 455677666 6789999999999999999999863
No 251
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=23.74 E-value=58 Score=24.59 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.1
Q ss_pred CCeEEEEcccccccccc
Q psy5205 65 TPCVVFIDEIDSVGAKR 81 (113)
Q Consensus 65 ~p~ilfiDEiD~l~~~R 81 (113)
...+++|||++.+...|
T Consensus 173 ~~~~vIiDEAHnl~d~~ 189 (551)
T 3crv_A 173 REYMIVIDEAHNLDKVN 189 (551)
T ss_dssp TTEEEEETTGGGGGGGG
T ss_pred CCeEEEEecccchHHHH
Confidence 56789999999998733
No 252
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=23.40 E-value=80 Score=18.89 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=27.9
Q ss_pred ChhhHhhcCCCCCceeec---hHHHHHHHHHHHHhCC-CeEEEEc
Q psy5205 32 NPEKFSTLGGKLPKGVLL---GARRVRDLFKAAKDRT-PCVVFID 72 (113)
Q Consensus 32 ~~~~~~~~g~~~~~giLl---~e~~l~~~F~~A~~~~-p~ilfiD 72 (113)
+++.+..|...--.-+.+ ++..+.++++.|++.+ |+.++.|
T Consensus 37 ~~~~~~~W~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~D 81 (115)
T 2zv3_A 37 NPRAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRD 81 (115)
T ss_dssp CHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 566666665322233444 7899999999998766 7777765
No 253
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=23.35 E-value=60 Score=20.69 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
.++.+.+.+..++..|.||.+-|++
T Consensus 26 ~~r~~~i~~~i~~~~pDIi~LQEv~ 50 (256)
T 4gz1_A 26 PERARGVCSCLALYSPDVVFLQEVI 50 (256)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4556777778888899999999974
No 254
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=23.33 E-value=51 Score=24.18 Aligned_cols=20 Identities=10% Similarity=0.219 Sum_probs=16.1
Q ss_pred HHhCCCeEEEEccccccccc
Q psy5205 61 AKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 61 A~~~~p~ilfiDEiD~l~~~ 80 (113)
.+++.|.+|+||.+..+...
T Consensus 306 ~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 306 VSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHSCCCEEEEECGGGCBCC
T ss_pred HHHcCCCEEEEcChhhcCCC
Confidence 34678999999999998643
No 255
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.27 E-value=70 Score=21.81 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhC------CCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKDR------TPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~------~p~ilfiDE 73 (113)
+..+=|-.++.|-.+ .|.+|++||
T Consensus 144 gGq~QRv~iAraL~~~~~~~~~p~lLllDE 173 (266)
T 4g1u_C 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDE 173 (266)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCCCEEEEECC
T ss_pred HHHHHHHHHHHHHhcccccCCCCCEEEEeC
Confidence 344445555666666 999999999
No 256
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=22.95 E-value=63 Score=18.16 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDE 73 (113)
+..+.++.+.+..|.++++|=
T Consensus 34 ~~~~al~~~~~~~~dlii~D~ 54 (120)
T 3f6p_A 34 DGNEAVEMVEELQPDLILLDI 54 (120)
T ss_dssp SHHHHHHHHHTTCCSEEEEET
T ss_pred CHHHHHHHHhhCCCCEEEEeC
Confidence 344566667788999999983
No 257
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=22.86 E-value=66 Score=22.50 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=26.5
Q ss_pred CCcee-echHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKGV-LLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~gi-Ll~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.|.|. .++...++++-+.|+++. ..+++||+.+
T Consensus 194 nptG~~~~~~~~l~~l~~l~~~~~-~~li~De~~~ 227 (397)
T 2ord_A 194 GESGIVPATKEFLEEARKLCDEYD-ALLVFDEVQC 227 (397)
T ss_dssp CTTTCEECCHHHHHHHHHHHHHHT-CEEEEECTTT
T ss_pred CCCCcccCCHHHHHHHHHHHHHcC-CEEEEEeccc
Confidence 35576 667889999999997765 7888999987
No 258
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=22.86 E-value=78 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=16.0
Q ss_pred HHHHHHHhCCC--eEEEEccccccc
Q psy5205 56 DLFKAAKDRTP--CVVFIDEIDSVG 78 (113)
Q Consensus 56 ~~F~~A~~~~p--~ilfiDEiD~l~ 78 (113)
-.+..|-...| .++++||.++-.
T Consensus 406 v~la~~l~~~~~~~~lilDEp~~gl 430 (517)
T 4ad8_A 406 VMLAVSTVLGADTPSVVFDEVDAGI 430 (517)
T ss_dssp HHHHHHHHHCCCSSEEEECSCSSSC
T ss_pred HHHHHHHHhCCCCCEEEEeCCcCCC
Confidence 33444556678 999999976644
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=22.81 E-value=64 Score=21.54 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
+..+=|-.++.|-...|.++++||-=
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPt 167 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEAT 167 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 44444556667777899999999953
No 260
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=22.64 E-value=2.1e+02 Score=20.30 Aligned_cols=10 Identities=40% Similarity=0.428 Sum_probs=9.3
Q ss_pred CCCeEEEEcc
Q psy5205 64 RTPCVVFIDE 73 (113)
Q Consensus 64 ~~p~ilfiDE 73 (113)
..|.++++||
T Consensus 302 ~~p~~lllDE 311 (365)
T 3qf7_A 302 GRLDAFFIDE 311 (365)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 6899999999
No 261
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.62 E-value=69 Score=18.02 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCeEEEEcc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDE 73 (113)
...++++...+..|.++++|-
T Consensus 35 ~~~~a~~~l~~~~~dlii~D~ 55 (127)
T 3i42_A 35 SGTDALHAMSTRGYDAVFIDL 55 (127)
T ss_dssp SHHHHHHHHHHSCCSEEEEES
T ss_pred CHHHHHHHHHhcCCCEEEEeC
Confidence 344566667788899999984
No 262
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=22.61 E-value=87 Score=18.79 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=28.6
Q ss_pred ChhhHhhcCCCCCceeec---hHHHHHHHHHHHHhCC-CeEEEEcc
Q psy5205 32 NPEKFSTLGGKLPKGVLL---GARRVRDLFKAAKDRT-PCVVFIDE 73 (113)
Q Consensus 32 ~~~~~~~~g~~~~~giLl---~e~~l~~~F~~A~~~~-p~ilfiDE 73 (113)
+++.+..|...--.-+.+ ++..+.++++.|++.+ |+.++.|-
T Consensus 39 ~~~~~~~W~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DA 84 (117)
T 1rlk_A 39 NRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDR 84 (117)
T ss_dssp CHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 566776665332233444 7899999999998766 77777653
No 263
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=22.43 E-value=70 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=26.8
Q ss_pred CCCCceeechHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy5205 41 GKLPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 41 ~~~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l~~ 79 (113)
...|.|..++.+.++++-+.+. ..+++||+.+.+.
T Consensus 173 ~~nptG~~~~~~~l~~l~~~~~----~~li~De~~~~~~ 207 (369)
T 3cq5_A 173 PNNPTGDVTSLDDVERIINVAP----GIVIVDEAYAEFS 207 (369)
T ss_dssp SCTTTCCCCCHHHHHHHHHHCS----SEEEEECTTGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHhCC----CEEEEECCchhhc
Confidence 3456788888888888776553 8999999988765
No 264
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=22.38 E-value=1.1e+02 Score=19.65 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAK 80 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD~l~~~ 80 (113)
+..+..+-..++...|..+++|.+..+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 445666667777889999999999888643
No 265
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.35 E-value=69 Score=18.52 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDE 73 (113)
+..+.++.+.+..|.++++|=
T Consensus 36 ~~~~al~~~~~~~~dlvl~D~ 56 (136)
T 3t6k_A 36 SGEEALQQIYKNLPDALICDV 56 (136)
T ss_dssp SHHHHHHHHHHSCCSEEEEES
T ss_pred CHHHHHHHHHhCCCCEEEEeC
Confidence 344566667788999999983
No 266
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.31 E-value=69 Score=18.11 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDE 73 (113)
...+.++.+.+..|.++++|-
T Consensus 38 ~~~~a~~~l~~~~~dlii~d~ 58 (132)
T 3lte_A 38 NGFDAGIKLSTFEPAIMTLDL 58 (132)
T ss_dssp SHHHHHHHHHHTCCSEEEEES
T ss_pred CHHHHHHHHHhcCCCEEEEec
Confidence 344556667788999999984
No 267
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=22.20 E-value=27 Score=22.14 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHH--hCCCeEEEEcccccccc
Q psy5205 50 GARRVRDLFKAAK--DRTPCVVFIDEIDSVGA 79 (113)
Q Consensus 50 ~e~~l~~~F~~A~--~~~p~ilfiDEiD~l~~ 79 (113)
|...+...+.... -..-..+++||+|.+..
T Consensus 129 T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred CHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 5555554443221 12457899999999864
No 268
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=22.08 E-value=20 Score=23.65 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.0
Q ss_pred HhCCCeEEEEcccc
Q psy5205 62 KDRTPCVVFIDEID 75 (113)
Q Consensus 62 ~~~~p~ilfiDEiD 75 (113)
-...|.++++||--
T Consensus 119 L~~~p~lllLDEPt 132 (208)
T 3b85_A 119 RTLNDAFVILDEAQ 132 (208)
T ss_dssp CCBCSEEEEECSGG
T ss_pred HhcCCCEEEEeCCc
Confidence 34579999999953
No 269
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=21.92 E-value=95 Score=22.45 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=27.0
Q ss_pred CCce-eechHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5205 43 LPKG-VLLGARRVRDLFKAAKDRTPCVVFIDEIDS 76 (113)
Q Consensus 43 ~~~g-iLl~e~~l~~~F~~A~~~~p~ilfiDEiD~ 76 (113)
.+.| +..+...++++-+.++++. .++++||+-+
T Consensus 242 ~~~G~~~~~~~~l~~l~~l~~~~g-~lli~DEv~~ 275 (449)
T 2cjg_A 242 GEGGDRHFRPEFFAAMRELCDEFD-ALLIFDEVQT 275 (449)
T ss_dssp TTTTCEECCHHHHHHHHHHHHHTT-CEEEEECTTT
T ss_pred CCCCCccCCHHHHHHHHHHHHHCC-cEEEEecccc
Confidence 4567 4668888999999997776 8899999988
No 270
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=21.80 E-value=1.2e+02 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHh-CCCeEEEEcc
Q psy5205 50 GARRVRDLFKAAKD-RTPCVVFIDE 73 (113)
Q Consensus 50 ~e~~l~~~F~~A~~-~~p~ilfiDE 73 (113)
+.+++-++++.|.+ ..|+|.|.|-
T Consensus 117 ~~~Ki~ra~e~A~~~~lP~I~l~dS 141 (530)
T 3iav_A 117 YGQKIVKVMDFALKTGCPVVGINDS 141 (530)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 56788888889976 5699999883
No 271
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=21.67 E-value=2.7e+02 Score=21.14 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+-+-..+.|-...|.|+++||-
T Consensus 141 gGe~Qrv~iA~aL~~~p~illlDEP 165 (538)
T 3ozx_A 141 GGGLQRLLVAASLLREADVYIFDQP 165 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3444445556677889999999993
No 272
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=21.50 E-value=90 Score=21.65 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4444555667777889999999994
No 273
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=21.43 E-value=83 Score=17.76 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDE 73 (113)
...+.++.+.+..|.++++|-
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d~ 55 (133)
T 3nhm_A 35 DGASGLQQALAHPPDVLISDV 55 (133)
T ss_dssp SHHHHHHHHHHSCCSEEEECS
T ss_pred CHHHHHHHHhcCCCCEEEEeC
Confidence 344566667778899999984
No 274
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=21.39 E-value=26 Score=22.70 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=11.8
Q ss_pred CeEEEEcccccccc
Q psy5205 66 PCVVFIDEIDSVGA 79 (113)
Q Consensus 66 p~ilfiDEiD~l~~ 79 (113)
-..+++||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 57899999998864
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=21.34 E-value=58 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~~~p~ilfiDEi 74 (113)
+..+=|-.++.|-...|.++++||-
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4444455667777889999999993
No 276
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=21.19 E-value=84 Score=22.47 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCceeechHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5205 43 LPKGVLLGARRVRDLFKAAKDRTPCVVFIDEIDSV 77 (113)
Q Consensus 43 ~~~giLl~e~~l~~~F~~A~~~~p~ilfiDEiD~l 77 (113)
.|.|...+...++++-+.|+++. ..++.||+-+.
T Consensus 186 ~ptG~~~~~~~l~~i~~la~~~~-i~li~De~~~~ 219 (456)
T 2ez2_A 186 LAGGQPVSMANMRAVRELTEAHG-IKVFYDATRCV 219 (456)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHTT-CCEEEECTTHH
T ss_pred CCCCccCCHHHHHHHHHHHHHcC-CeEEEEccccc
Confidence 46788888889999999997764 88899999776
No 277
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=20.88 E-value=54 Score=14.94 Aligned_cols=22 Identities=14% Similarity=0.598 Sum_probs=16.5
Q ss_pred CCCCCCCCCcccccHHHHHHHH
Q psy5205 3 PEEINITFKDVRGVDEAKQELK 24 (113)
Q Consensus 3 ~~~~~~~~~di~G~~~~k~~l~ 24 (113)
|-...++.+||.-.++.++++.
T Consensus 6 PT~I~l~~eDi~e~E~~rke~e 27 (29)
T 3hym_A 6 PTRLELKLDDIEEFENIRKDLE 27 (29)
T ss_dssp CCCCCCCSGGGHHHHHHHHHC-
T ss_pred CcEEEecHHHHHHHHHHHHHHh
Confidence 5556788999988888887654
No 278
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=20.82 E-value=1.3e+02 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHh-CCCeEEEEccc
Q psy5205 50 GARRVRDLFKAAKD-RTPCVVFIDEI 74 (113)
Q Consensus 50 ~e~~l~~~F~~A~~-~~p~ilfiDEi 74 (113)
+.+++.++++.|.+ .-|+|.|.|--
T Consensus 126 ~~~Ki~Ra~e~A~~~~lPvI~l~dSg 151 (588)
T 3gf3_A 126 QAENLIRCSDAAKMMHLPLIYLLNCS 151 (588)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 57788889999976 56999999863
No 279
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=20.73 E-value=73 Score=20.32 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccc
Q psy5205 51 ARRVRDLFKAAKDRTPCVVFIDEID 75 (113)
Q Consensus 51 e~~l~~~F~~A~~~~p~ilfiDEiD 75 (113)
..+...+.+..++..|.||.+-|++
T Consensus 30 ~~r~~~i~~~i~~~~pDIi~LQEv~ 54 (256)
T 4fva_A 30 LTRMKAVAHIVKNVNPDILFLQEVV 54 (256)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecC
Confidence 4556677788888999999999984
No 280
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.72 E-value=87 Score=17.92 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCeEEEEcc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDE 73 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDE 73 (113)
...+.++.+.+..|.++++|-
T Consensus 38 ~~~~a~~~l~~~~~dlvi~d~ 58 (140)
T 3grc_A 38 SAAQALEQVARRPYAAMTVDL 58 (140)
T ss_dssp SHHHHHHHHHHSCCSEEEECS
T ss_pred CHHHHHHHHHhCCCCEEEEeC
Confidence 345566667788899999984
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=20.49 E-value=61 Score=22.03 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCeEEEEccc
Q psy5205 53 RVRDLFKAAKDRTPCVVFIDEI 74 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiDEi 74 (113)
.++.....|-...|.++++||.
T Consensus 86 ~l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCC
T ss_pred HHHHHHHHHHhhCCCEEEeCCC
Confidence 3466666676779999999997
No 282
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=20.36 E-value=1.8e+02 Score=24.83 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHh--CCCeEEEEccccccccccCCCCCCchhHHHHHHHHHHhcCCCCCCceEEc
Q psy5205 55 RDLFKAAKD--RTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113 (113)
Q Consensus 55 ~~~F~~A~~--~~p~ilfiDEiD~l~~~R~~~~~~~~~~~i~~~lL~~ld~~~~~~~v~vi 113 (113)
++....||+ ..|.||++||+ .+..+...=..+...|+...++..+++|
T Consensus 1223 rQriaiARAllr~~~ILiLDEa-----------TSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEA-----------TSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESC-----------CCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCc-----------cccCCHHHHHHHHHHHHHHcCCCEEEEe
No 283
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=20.14 E-value=69 Score=18.09 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCCeEEEEc
Q psy5205 53 RVRDLFKAAKDRTPCVVFID 72 (113)
Q Consensus 53 ~l~~~F~~A~~~~p~ilfiD 72 (113)
+..+.++..++..|.++++|
T Consensus 34 ~~~~al~~l~~~~~dlvllD 53 (122)
T 3gl9_A 34 NGQIALEKLSEFTPDLIVLX 53 (122)
T ss_dssp SHHHHHHHHTTBCCSEEEEC
T ss_pred CHHHHHHHHHhcCCCEEEEe
Confidence 34556666778899999998
Done!