Your job contains 1 sequence.
>psy5205
VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLGARRVRDLFKA
AKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5205
(113 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034792 - symbol:CG3499 species:7227 "Drosophila m... 298 1.7e-40 2
WB|WBGene00010842 - symbol:ymel-1 species:6239 "Caenorhab... 251 6.9e-32 2
UNIPROTKB|J9NRR9 - symbol:YME1L1 "Uncharacterized protein... 229 1.1e-29 2
MGI|MGI:1351651 - symbol:Yme1l1 "YME1-like 1 (S. cerevisi... 229 1.2e-29 2
UNIPROTKB|G3V886 - symbol:Yme1l1 "YME1-like 1 (S. cerevis... 229 1.2e-29 2
UNIPROTKB|A6QR12 - symbol:YME1L1 "Uncharacterized protein... 229 1.2e-29 2
UNIPROTKB|F1PRV6 - symbol:YME1L1 "Uncharacterized protein... 229 1.4e-29 2
UNIPROTKB|F1RVK1 - symbol:YME1L1 "Uncharacterized protein... 229 1.6e-29 2
UNIPROTKB|Q96TA2 - symbol:YME1L1 "ATP-dependent zinc meta... 229 1.6e-29 2
UNIPROTKB|F1NTK8 - symbol:YME1L1 "Uncharacterized protein... 229 2.0e-29 2
UNIPROTKB|F1P519 - symbol:YME1L1 "Uncharacterized protein... 229 2.0e-29 2
ZFIN|ZDB-GENE-070410-25 - symbol:yme1l1b "YME1-like 1b" s... 230 6.8e-29 2
ZFIN|ZDB-GENE-091113-41 - symbol:yme1l1a "YME1-like 1a" s... 232 7.0e-29 2
RGD|620764 - symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" ... 214 5.0e-28 2
TAIR|locus:2163736 - symbol:FTSH11 "FTSH protease 11" spe... 188 4.9e-24 2
GENEDB_PFALCIPARUM|PF14_0616 - symbol:PF14_0616 "i-AAA pr... 196 6.5e-24 2
UNIPROTKB|Q8IKI9 - symbol:PF14_0616 "ATP-dependent protea... 196 6.5e-24 2
UNIPROTKB|Q3AFJ8 - symbol:ftsH "ATP-dependent zinc metall... 185 5.0e-23 2
TIGR_CMR|CHY_0214 - symbol:CHY_0214 "cell division protei... 185 5.0e-23 2
CGD|CAL0002950 - symbol:YME1 species:5476 "Candida albica... 188 5.4e-23 2
UNIPROTKB|Q5LNU8 - symbol:ftsH "ATP-dependent zinc metall... 173 1.6e-22 2
TIGR_CMR|SPO_3105 - symbol:SPO_3105 "ATP-dependent metall... 173 1.6e-22 2
ASPGD|ASPL0000029469 - symbol:AN5588 species:162425 "Emer... 180 2.2e-22 2
TAIR|locus:2009235 - symbol:FTSH8 "FTSH protease 8" speci... 180 6.3e-22 2
TAIR|locus:2052806 - symbol:VAR2 "VARIEGATED 2" species:3... 180 6.5e-22 2
TAIR|locus:2057386 - symbol:ftsh4 "FTSH protease 4" speci... 193 6.7e-22 2
TIGR_CMR|GSU_1809 - symbol:GSU_1809 "cell division protei... 173 7.3e-22 2
DICTYBASE|DDB_G0267492 - symbol:DDB_G0267492 "peptidase M... 186 8.9e-22 2
UNIPROTKB|P37476 - symbol:ftsH "ATP-dependent zinc metall... 178 1.0e-21 2
TIGR_CMR|CBU_1352 - symbol:CBU_1352 "ATP-dependent metall... 171 1.1e-21 2
TIGR_CMR|BA_0064 - symbol:BA_0064 "cell division protein ... 179 1.6e-21 2
TAIR|locus:2157637 - symbol:VAR1 "VARIEGATED 1" species:3... 178 1.8e-21 2
SGD|S000006228 - symbol:YME1 "Catalytic subunit of the mi... 183 2.1e-21 2
TAIR|locus:2011952 - symbol:FTSH1 "FTSH protease 1" speci... 178 3.9e-21 2
UNIPROTKB|Q9KU86 - symbol:ftsH "ATP-dependent zinc metall... 181 5.8e-21 2
TIGR_CMR|VC_0637 - symbol:VC_0637 "cell division protein ... 181 5.8e-21 2
TIGR_CMR|SO_1197 - symbol:SO_1197 "ATP-dependent metallop... 177 6.0e-21 2
UNIPROTKB|Q55700 - symbol:ftsH2 "ATP-dependent zinc metal... 175 8.7e-21 2
UNIPROTKB|P0AAI3 - symbol:ftsH species:83333 "Escherichia... 177 2.5e-20 2
TIGR_CMR|NSE_0423 - symbol:NSE_0423 "ATP-dependent metall... 163 4.2e-20 2
TIGR_CMR|CPS_3452 - symbol:CPS_3452 "ATP-dependent metall... 178 4.2e-20 2
TIGR_CMR|CJE_1085 - symbol:CJE_1085 "cell division protei... 157 5.3e-20 2
DICTYBASE|DDB_G0272120 - symbol:rcaA "peptidase M41, FtsH... 175 1.1e-19 2
TAIR|locus:2075581 - symbol:ftsh7 "FTSH protease 7" speci... 150 1.4e-19 2
UNIPROTKB|Q2GFA1 - symbol:ftsH "ATP-dependent zinc metall... 168 1.5e-19 2
TIGR_CMR|ECH_1098 - symbol:ECH_1098 "ATP-dependent metall... 168 1.5e-19 2
UNIPROTKB|Q2GIT4 - symbol:ftsH "ATP-dependent zinc metall... 168 1.9e-19 2
TIGR_CMR|APH_1179 - symbol:APH_1179 "ATP-dependent metall... 168 1.9e-19 2
TIGR_CMR|DET_0391 - symbol:DET_0391 "ATP-dependent metall... 162 2.0e-19 2
TAIR|locus:2154568 - symbol:ftsh9 "FTSH protease 9" speci... 150 2.9e-19 2
POMBASE|SPCC965.04c - symbol:SPCC965.04c "mitochondrial i... 154 3.2e-19 2
FB|FBgn0036702 - symbol:CG6512 species:7227 "Drosophila m... 162 3.7e-19 2
FB|FBgn0024992 - symbol:CG2658 species:7227 "Drosophila m... 162 7.5e-19 2
UNIPROTKB|A7E2Z6 - symbol:SPG7 "SPG7 protein" species:991... 165 1.0e-18 2
TIGR_CMR|CJE_1259 - symbol:CJE_1259 "cell division protei... 152 1.1e-18 2
UNIPROTKB|I3LLQ8 - symbol:AFG3L2 "Uncharacterized protein... 157 1.3e-18 2
UNIPROTKB|F1N9N5 - symbol:AFG3L2 "Uncharacterized protein... 157 1.6e-18 2
UNIPROTKB|F1NXP0 - symbol:SPG7 "Uncharacterized protein" ... 164 1.6e-18 2
ZFIN|ZDB-GENE-030131-5391 - symbol:spg7 "spastic parapleg... 163 1.8e-18 2
UNIPROTKB|E2R4F3 - symbol:SPG7 "Uncharacterized protein" ... 163 1.8e-18 2
CGD|CAL0004443 - symbol:orf19.2057 species:5476 "Candida ... 156 2.2e-18 2
UNIPROTKB|P0C5C0 - symbol:ftsH "ATP-dependent zinc metall... 169 2.5e-18 2
CGD|CAL0000075 - symbol:AFG3 species:5476 "Candida albica... 160 2.9e-18 2
UNIPROTKB|Q5AJC2 - symbol:AFG3 "Putative uncharacterized ... 160 2.9e-18 2
UNIPROTKB|Q9Y4W6 - symbol:AFG3L2 "AFG3-like protein 2" sp... 157 3.0e-18 2
MGI|MGI:1916847 - symbol:Afg3l2 "AFG3(ATPase family gene ... 157 3.0e-18 2
UNIPROTKB|F1LN92 - symbol:Afg3l2 "Protein Afg3l2" species... 157 3.0e-18 2
UNIPROTKB|E1BZ74 - symbol:AFG3L2 "Uncharacterized protein... 157 3.1e-18 2
UNIPROTKB|Q2KJI7 - symbol:AFG3L2 "AFG3-like protein 2" sp... 157 3.1e-18 2
UNIPROTKB|E2QYF3 - symbol:AFG3L2 "Uncharacterized protein... 157 3.1e-18 2
UNIPROTKB|Q9UQ90 - symbol:SPG7 "Paraplegin" species:9606 ... 163 3.7e-18 2
MGI|MGI:2385906 - symbol:Spg7 "spastic paraplegia 7 homol... 166 4.4e-18 2
ZFIN|ZDB-GENE-070912-46 - symbol:afg3l2 "AFG3 ATPase fami... 155 4.9e-18 2
RGD|727940 - symbol:Spg7 "spastic paraplegia 7 homolog (h... 164 6.3e-18 2
UNIPROTKB|Q7TT47 - symbol:Spg7 "Paraplegin" species:10116... 164 6.3e-18 2
DICTYBASE|DDB_G0293388 - symbol:DDB_G0293388 "ATP-depende... 167 8.5e-18 2
TIGR_CMR|GSU_1180 - symbol:GSU_1180 "cell division protei... 153 1.0e-17 2
ASPGD|ASPL0000072959 - symbol:AN4557 species:162425 "Emer... 154 1.3e-17 2
SGD|S000000819 - symbol:AFG3 "Component, with Yta12p, of ... 143 2.4e-17 2
WB|WBGene00021425 - symbol:ppgn-1 species:6239 "Caenorhab... 150 3.6e-17 2
MGI|MGI:1928277 - symbol:Afg3l1 "AFG3(ATPase family gene ... 159 4.0e-17 2
RGD|1309722 - symbol:Afg3l1 "AFG3(ATPase family gene 3)-l... 158 4.7e-17 2
UNIPROTKB|E1BFQ0 - symbol:E1BFQ0 "Uncharacterized protein... 155 5.4e-17 2
SGD|S000004695 - symbol:YTA12 "Component of the mitochond... 149 6.0e-17 2
POMBASE|SPBC543.09 - symbol:yta12 "mitochondrial m-AAA pr... 144 6.6e-17 2
WB|WBGene00004978 - symbol:spg-7 species:6239 "Caenorhabd... 149 6.7e-17 2
TAIR|locus:2066128 - symbol:ftsh3 "FTSH protease 3" speci... 141 7.5e-17 2
DICTYBASE|DDB_G0284249 - symbol:DDB_G0284249 "peptidase M... 150 1.3e-16 2
TAIR|locus:2076929 - symbol:AT3G02450 species:3702 "Arabi... 165 1.5e-15 2
GENEDB_PFALCIPARUM|PFL1925w - symbol:PFL1925w "cell divis... 141 1.6e-15 2
UNIPROTKB|Q8I526 - symbol:PFL1925w "Cell division protein... 141 1.6e-15 2
TAIR|locus:2025052 - symbol:ftsh10 "FTSH protease 10" spe... 135 2.2e-15 2
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl... 143 3.6e-15 2
TAIR|locus:2138146 - symbol:FtsHi1 "FTSH inactive proteas... 133 1.7e-14 2
TAIR|locus:2101933 - symbol:AtCDC48B "AT3G53230" species:... 131 1.1e-12 2
UNIPROTKB|G4N517 - symbol:MGG_05193 "Cell division contro... 126 1.2e-12 2
SGD|S000002284 - symbol:CDC48 "AAA ATPase involved in mul... 116 1.3e-12 2
ZFIN|ZDB-GENE-030131-5408 - symbol:vcp "valosin containin... 118 1.9e-12 2
TAIR|locus:2831844 - symbol:AtCDC48C "cell division cycle... 127 3.0e-12 2
GENEDB_PFALCIPARUM|PF07_0047 - symbol:PF07_0047 "cell div... 143 4.7e-12 2
WARNING: Descriptions of 456 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0034792 [details] [associations]
symbol:CG3499 species:7227 "Drosophila melanogaster"
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
EMBL:AE013599 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9LCZ4 GeneTree:ENSGT00550000074836
KO:K08955 EMBL:AY051480 RefSeq:NP_726263.1 UniGene:Dm.4589
SMR:Q9W1Y0 IntAct:Q9W1Y0 MINT:MINT-924656
EnsemblMetazoa:FBtr0071906 GeneID:37636 KEGG:dme:Dmel_CG3499
UCSC:CG3499-RB FlyBase:FBgn0034792 InParanoid:Q9W1Y0
OrthoDB:EOG4Z613M GenomeRNAi:37636 NextBio:804672 Uniprot:Q9W1Y0
Length = 736
Score = 298 (110.0 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 57/63 (90%), Positives = 60/63 (95%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
ARRVRDLFKAAK R PCV+FIDEIDSVGAKRTNSVLHPYANQTINQLL+EMDGFHQN GV
Sbjct: 378 ARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGV 437
Query: 111 VVL 113
+VL
Sbjct: 438 IVL 440
Score = 168 (64.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 31/37 (83%), Positives = 36/37 (97%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDPEEIN+TF+DV+G DEAKQELKE+VEFLK+PEKFS
Sbjct: 290 VDPEEINVTFEDVKGCDEAKQELKEVVEFLKSPEKFS 326
>WB|WBGene00010842 [details] [associations]
symbol:ymel-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:Z49128 PIR:T23690
RefSeq:NP_499298.2 ProteinModelPortal:P54813 SMR:P54813
MEROPS:M41.A11 PaxDb:P54813 EnsemblMetazoa:M03C11.5.1
EnsemblMetazoa:M03C11.5.2 GeneID:176460 KEGG:cel:CELE_M03C11.5
UCSC:M03C11.5.1 CTD:176460 WormBase:M03C11.5
GeneTree:ENSGT00550000074836 InParanoid:P54813 OMA:KWNQYES
NextBio:892672 Uniprot:P54813
Length = 723
Score = 251 (93.4 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 45/63 (71%), Positives = 56/63 (88%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
ARRVRDLF AK R PC++FIDEIDSVG+KR ++ +HPYANQTINQLL+EMDGF +NEG+
Sbjct: 326 ARRVRDLFDKAKARAPCIIFIDEIDSVGSKRVSNSIHPYANQTINQLLSEMDGFTRNEGI 385
Query: 111 VVL 113
+V+
Sbjct: 386 IVI 388
Score = 134 (52.2 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 23/37 (62%), Positives = 34/37 (91%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
V+PE++ +TF DVRG+DEAK E++EIV++LK+PEK+S
Sbjct: 238 VNPEDVQVTFDDVRGMDEAKLEVEEIVDYLKDPEKYS 274
>UNIPROTKB|J9NRR9 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0016020
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 GeneTree:ENSGT00550000074836 EMBL:AAEX03001169
Ensembl:ENSCAFT00000045217 Uniprot:J9NRR9
Length = 694
Score = 229 (85.7 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 359 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 418
Query: 111 VVL 113
+++
Sbjct: 419 III 421
Score = 135 (52.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 270 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 307
Score = 38 (18.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
N+T QLLA+MD
Sbjct: 583 NETRAQLLAQMD 594
>MGI|MGI:1351651 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0006515
"misfolded or incompletely synthesized protein catabolic process"
evidence=ISO] [GO:0007005 "mitochondrion organization"
evidence=ISO] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008283
"cell proliferation" evidence=ISO] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
MGI:MGI:1351651 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 GeneTree:ENSGT00550000074836 KO:K08955
CTD:10730 HOVERGEN:HBG057127 OMA:HTSHVSA EMBL:AF090430
EMBL:AY136286 EMBL:AY136287 EMBL:AK079175 EMBL:BC007128
IPI:IPI00136555 RefSeq:NP_038799.1 UniGene:Mm.23335
ProteinModelPortal:O88967 SMR:O88967 STRING:O88967
PhosphoSite:O88967 PaxDb:O88967 PRIDE:O88967
Ensembl:ENSMUST00000028117 GeneID:27377 KEGG:mmu:27377
InParanoid:O88967 OrthoDB:EOG4KH2TK NextBio:305300 Bgee:O88967
CleanEx:MM_YME1L1 Genevestigator:O88967
GermOnline:ENSMUSG00000026775 Uniprot:O88967
Length = 715
Score = 229 (85.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 359 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 418
Query: 111 VVL 113
+++
Sbjct: 419 III 421
Score = 135 (52.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 270 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 307
Score = 38 (18.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
N+T QLLA+MD
Sbjct: 583 NETRAQLLAQMD 594
>UNIPROTKB|G3V886 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382 RGD:620764
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 OMA:HTSHVSA
UniGene:Rn.8153 EMBL:CH474100 RefSeq:XP_003751780.1
Ensembl:ENSRNOT00000023395 GeneID:100910779 KEGG:rno:100910779
Uniprot:G3V886
Length = 715
Score = 229 (85.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 359 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 418
Query: 111 VVL 113
+++
Sbjct: 419 III 421
Score = 135 (52.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 270 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 307
Score = 38 (18.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
N+T QLLA+MD
Sbjct: 583 NETRAQLLAQMD 594
>UNIPROTKB|A6QR12 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008283 "cell proliferation" evidence=ISS] [GO:0005743
"mitochondrial inner membrane" evidence=ISS] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005 HOGENOM:HOG000217276
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 CTD:10730
HOVERGEN:HBG057127 OMA:HTSHVSA OrthoDB:EOG4KH2TK EMBL:DAAA02035354
EMBL:BC150071 IPI:IPI00866889 RefSeq:NP_001095320.1 UniGene:Bt.1786
SMR:A6QR12 STRING:A6QR12 Ensembl:ENSBTAT00000021868 GeneID:505118
KEGG:bta:505118 InParanoid:A6QR12 NextBio:20866987 Uniprot:A6QR12
Length = 717
Score = 229 (85.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 359 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 418
Query: 111 VVL 113
+++
Sbjct: 419 III 421
Score = 135 (52.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 270 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 307
Score = 38 (18.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
N+T QLLA+MD
Sbjct: 583 NETRAQLLAQMD 594
>UNIPROTKB|F1PRV6 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AAEX03001169
Ensembl:ENSCAFT00000007090 Uniprot:F1PRV6
Length = 748
Score = 229 (85.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 393 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 452
Query: 111 VVL 113
+++
Sbjct: 453 III 455
Score = 135 (52.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 304 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 341
Score = 38 (18.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
N+T QLLA+MD
Sbjct: 617 NETRAQLLAQMD 628
>UNIPROTKB|F1RVK1 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008283 "cell proliferation" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 GeneTree:ENSGT00550000074836
OMA:HTSHVSA EMBL:FP016148 Ensembl:ENSSSCT00000012110 Uniprot:F1RVK1
Length = 768
Score = 229 (85.7 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 412 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 471
Query: 111 VVL 113
+++
Sbjct: 472 III 474
Score = 135 (52.6 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 323 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 360
Score = 38 (18.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
N+T QLLA+MD
Sbjct: 636 NETRAQLLAQMD 647
>UNIPROTKB|Q96TA2 [details] [associations]
symbol:YME1L1 "ATP-dependent zinc metalloprotease YME1L1"
species:9606 "Homo sapiens" [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0006515 "misfolded or incompletely synthesized
protein catabolic process" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005524 GO:GO:0016020 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0006508 GO:GO:0004222
EMBL:CH471072 EMBL:AL160291 GO:GO:0030163 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
EMBL:AL162272 HOGENOM:HOG000217276 UniGene:Hs.74647 KO:K08955
EMBL:AF151782 EMBL:AJ132637 EMBL:AY358484 EMBL:AK297973
EMBL:BC023507 EMBL:BC024032 IPI:IPI00045946 IPI:IPI00099529
RefSeq:NP_001240795.1 RefSeq:NP_055078.1 RefSeq:NP_647473.1
UniGene:Hs.499145 ProteinModelPortal:Q96TA2 SMR:Q96TA2
IntAct:Q96TA2 STRING:Q96TA2 MEROPS:M41.A20 PhosphoSite:Q96TA2
DMDM:46397258 PaxDb:Q96TA2 PRIDE:Q96TA2 Ensembl:ENST00000326799
Ensembl:ENST00000375972 Ensembl:ENST00000376016 GeneID:10730
KEGG:hsa:10730 UCSC:uc001iti.3 UCSC:uc001itj.3 CTD:10730
GeneCards:GC10M027439 H-InvDB:HIX0127242 HGNC:HGNC:12843 MIM:607472
neXtProt:NX_Q96TA2 PharmGKB:PA37434 HOVERGEN:HBG057127
InParanoid:Q96TA2 OMA:HTSHVSA PhylomeDB:Q96TA2 ChiTaRS:YME1L1
GenomeRNAi:10730 NextBio:40734 ArrayExpress:Q96TA2 Bgee:Q96TA2
CleanEx:HS_YME1L1 Genevestigator:Q96TA2 GermOnline:ENSG00000136758
Uniprot:Q96TA2
Length = 773
Score = 229 (85.7 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 417 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 476
Query: 111 VVL 113
+++
Sbjct: 477 III 479
Score = 135 (52.6 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 328 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 365
Score = 38 (18.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
N+T QLLA+MD
Sbjct: 641 NETRAQLLAQMD 652
>UNIPROTKB|F1NTK8 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:AADN02000548 IPI:IPI00601077
Ensembl:ENSGALT00000012112 Uniprot:F1NTK8
Length = 712
Score = 229 (85.7 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 42/63 (66%), Positives = 50/63 (79%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 356 ASRIRSLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 415
Query: 111 VVL 113
V++
Sbjct: 416 VII 418
Score = 133 (51.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 25/38 (65%), Positives = 34/38 (89%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP KF+
Sbjct: 267 VDPIQLKNVTFEHVKGVEEAKQELQEVVEFLKNPHKFT 304
Score = 36 (17.7 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 91 NQTINQLLAEMD 102
++T +QLLA+MD
Sbjct: 580 SETRSQLLAQMD 591
>UNIPROTKB|F1P519 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005743 GO:GO:0008283 GO:GO:0004222
GO:GO:0006515 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AADN02000548
IPI:IPI00822340 Ensembl:ENSGALT00000038444 Uniprot:F1P519
Length = 717
Score = 229 (85.7 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 42/63 (66%), Positives = 50/63 (79%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 361 ASRIRSLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 420
Query: 111 VVL 113
V++
Sbjct: 421 VII 423
Score = 133 (51.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 25/38 (65%), Positives = 34/38 (89%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP KF+
Sbjct: 272 VDPIQLKNVTFEHVKGVEEAKQELQEVVEFLKNPHKFT 309
Score = 36 (17.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 91 NQTINQLLAEMD 102
++T +QLLA+MD
Sbjct: 585 SETRSQLLAQMD 596
>ZFIN|ZDB-GENE-070410-25 [details] [associations]
symbol:yme1l1b "YME1-like 1b" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-070410-25 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 KO:K08955
MEROPS:M41.A20 HOVERGEN:HBG057127 EMBL:BC139529 IPI:IPI00614293
RefSeq:NP_001082983.1 UniGene:Dr.148676 ProteinModelPortal:A4QNU8
SMR:A4QNU8 STRING:A4QNU8 GeneID:557907 KEGG:dre:557907 CTD:557907
InParanoid:A4QNU8 NextBio:20882221 Uniprot:A4QNU8
Length = 722
Score = 230 (86.0 bits), Expect = 6.8e-29, Sum P(2) = 6.8e-29
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 366 ASRIRNLFREAKGNAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 425
Query: 111 VVL 113
+++
Sbjct: 426 III 428
Score = 127 (49.8 bits), Expect = 6.8e-29, Sum P(2) = 6.8e-29
Identities = 23/38 (60%), Positives = 34/38 (89%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAK EL+E+VEFL+NP+KF+
Sbjct: 277 VDPVQMKNVTFEHVKGVEEAKNELQEVVEFLRNPQKFT 314
Score = 33 (16.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
++T QLLA+MD
Sbjct: 590 SETRAQLLAQMD 601
>ZFIN|ZDB-GENE-091113-41 [details] [associations]
symbol:yme1l1a "YME1-like 1a" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-091113-41 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:CU138525 IPI:IPI00962165
Ensembl:ENSDART00000110185 Uniprot:E7EZJ5
Length = 729
Score = 232 (86.7 bits), Expect = 7.0e-29, Sum P(2) = 7.0e-29
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LFK AK PCV+FIDE+DSVG KR S +HPY+ QTINQLLAEMDGF NEGV
Sbjct: 373 ASRIRNLFKEAKASAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGV 432
Query: 111 VVL 113
+V+
Sbjct: 433 IVI 435
Score = 125 (49.1 bits), Expect = 7.0e-29, Sum P(2) = 7.0e-29
Identities = 23/38 (60%), Positives = 34/38 (89%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ NITF+ V+GV+EAK EL+++VEFL+NP+KF+
Sbjct: 284 VDPVQMKNITFEHVKGVEEAKNELQDVVEFLRNPQKFT 321
Score = 33 (16.7 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 91 NQTINQLLAEMD 102
++T QLLA+MD
Sbjct: 597 SETRAQLLAQMD 608
>RGD|620764 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO;ISS] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO;ISS]
[GO:0007005 "mitochondrion organization" evidence=ISO;ISS]
[GO:0008283 "cell proliferation" evidence=ISO;ISS] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 RGD:620764 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 MEROPS:M41.A20 HOVERGEN:HBG057127
OrthoDB:EOG4KH2TK EMBL:AF151784 IPI:IPI00206065 UniGene:Rn.8153
ProteinModelPortal:Q925S8 SMR:Q925S8 MINT:MINT-4611841
STRING:Q925S8 PRIDE:Q925S8 UCSC:RGD:620764 InParanoid:Q925S8
Genevestigator:Q925S8 GermOnline:ENSRNOG00000017100 Uniprot:Q925S8
Length = 715
Score = 214 (80.4 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+R+LF+ AK PCV+FIDE+DSVG KR +HPY+ QTI QLLAEMDGF NEGV
Sbjct: 359 ASRIRNLFREAKANAPCVIFIDELDSVGGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGV 418
Query: 111 VVL 113
+++
Sbjct: 419 III 421
Score = 135 (52.6 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 25/38 (65%), Positives = 35/38 (92%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+
Sbjct: 270 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFT 307
Score = 32 (16.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 91 NQTINQLLAEMD 102
N+ QLLA+MD
Sbjct: 583 NEIRAQLLAQMD 594
>TAIR|locus:2163736 [details] [associations]
symbol:FTSH11 "FTSH protease 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=TAS] [GO:0009408 "response to heat" evidence=IMP]
[GO:0009644 "response to high light intensity" evidence=IMP]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005743 GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0009408 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176
EMBL:AB025622 HOGENOM:HOG000217276 GO:GO:0010304 EMBL:AY091086
EMBL:AY123027 IPI:IPI00537766 RefSeq:NP_568787.1 UniGene:At.7145
ProteinModelPortal:Q9FGM0 SMR:Q9FGM0 MEROPS:M41.018 PaxDb:Q9FGM0
PRIDE:Q9FGM0 EnsemblPlants:AT5G53170.1 GeneID:835398
KEGG:ath:AT5G53170 GeneFarm:4747 TAIR:At5g53170 InParanoid:Q9FGM0
OMA:DIMPEKN PhylomeDB:Q9FGM0 ProtClustDB:CLSN2690002
Genevestigator:Q9FGM0 Uniprot:Q9FGM0
Length = 806
Score = 188 (71.2 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
ARRVR LF+AAK + PC++FIDEID+VG+ R H +T++QLL EMDGF QNEG+
Sbjct: 440 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFEQNEGI 497
Query: 111 VVL 113
+V+
Sbjct: 498 IVM 500
Score = 125 (49.1 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 23/37 (62%), Positives = 31/37 (83%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+ PE+ TFKDV+G D+AKQEL+E+VE+LKNP KF+
Sbjct: 352 ITPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFT 388
>GENEDB_PFALCIPARUM|PF14_0616 [details] [associations]
symbol:PF14_0616 "i-AAA protease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 196 (74.1 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
ARR+R+LF+AAK PC+VFIDEID+VG+KR++ + T+NQLL E+DGF QNEG+
Sbjct: 332 ARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRD-NSAVRMTLNQLLVELDGFEQNEGI 390
Query: 111 VVL 113
VV+
Sbjct: 391 VVI 393
Score = 114 (45.2 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E + +TF DV+G DE KQEL+EI+++LKN +KF+
Sbjct: 247 ENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFT 280
>UNIPROTKB|Q8IKI9 [details] [associations]
symbol:PF14_0616 "ATP-dependent protease la, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 196 (74.1 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
ARR+R+LF+AAK PC+VFIDEID+VG+KR++ + T+NQLL E+DGF QNEG+
Sbjct: 332 ARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRD-NSAVRMTLNQLLVELDGFEQNEGI 390
Query: 111 VVL 113
VV+
Sbjct: 391 VVI 393
Score = 114 (45.2 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E + +TF DV+G DE KQEL+EI+++LKN +KF+
Sbjct: 247 ENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFT 280
>UNIPROTKB|Q3AFJ8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
Length = 619
Score = 185 (70.2 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF+ AK PC+VFIDEID+VG +R + H QT+NQLL EMDGF+ NE
Sbjct: 236 ASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNE 295
Query: 109 GVVVL 113
G++++
Sbjct: 296 GIIII 300
Score = 115 (45.5 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E+ +TF DV G+DE K+EL EIVEFLKNP K++
Sbjct: 151 EKKRVTFADVAGIDEVKEELAEIVEFLKNPRKYN 184
>TIGR_CMR|CHY_0214 [details] [associations]
symbol:CHY_0214 "cell division protein FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
Uniprot:Q3AFJ8
Length = 619
Score = 185 (70.2 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF+ AK PC+VFIDEID+VG +R + H QT+NQLL EMDGF+ NE
Sbjct: 236 ASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNE 295
Query: 109 GVVVL 113
G++++
Sbjct: 296 GIIII 300
Score = 115 (45.5 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E+ +TF DV G+DE K+EL EIVEFLKNP K++
Sbjct: 151 EKKRVTFADVAGIDEVKEELAEIVEFLKNPRKYN 184
>CGD|CAL0002950 [details] [associations]
symbol:YME1 species:5476 "Candida albicans" [GO:0031942
"i-AAA complex" evidence=IEA] [GO:0006515 "misfolded or
incompletely synthesized protein catabolic process" evidence=IEA]
[GO:0001300 "chronological cell aging" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 CGD:CAL0002950 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.004
EMBL:AACQ01000068 EMBL:AACQ01000067 KO:K08955 RefSeq:XP_716504.1
RefSeq:XP_716560.1 ProteinModelPortal:Q5A458 SMR:Q5A458
STRING:Q5A458 GeneID:3641816 GeneID:3641839 KEGG:cal:CaO19.1252
KEGG:cal:CaO19.8836 Uniprot:Q5A458
Length = 687
Score = 188 (71.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A+R+R+LF A+D+ P ++FIDE+D++G KR N YA QT+NQLL E+DGF Q EG+
Sbjct: 303 AKRIRELFSQARDKAPAIIFIDELDAIGGKR-NPKDQAYAKQTLNQLLVELDGFSQTEGI 361
Query: 111 VVL 113
+++
Sbjct: 362 III 364
Score = 113 (44.8 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
VD + + FKDV+G DEA+ EL+EIV+FLK+P KF+
Sbjct: 215 VDVSQSTVRFKDVQGCDEARAELEEIVDFLKDPSKFT 251
>UNIPROTKB|Q5LNU8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 173 (66.0 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ AK PC+VFIDEID+VG R + QT+NQLL EMDGF NE
Sbjct: 234 ASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANE 293
Query: 109 GVVVL 113
GV++L
Sbjct: 294 GVIIL 298
Score = 123 (48.4 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 22/30 (73%), Positives = 28/30 (93%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+TF DV G+DEAK+EL+EIVEFL+NP+KFS
Sbjct: 153 VTFDDVAGIDEAKEELEEIVEFLRNPQKFS 182
>TIGR_CMR|SPO_3105 [details] [associations]
symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 173 (66.0 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ AK PC+VFIDEID+VG R + QT+NQLL EMDGF NE
Sbjct: 234 ASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANE 293
Query: 109 GVVVL 113
GV++L
Sbjct: 294 GVIIL 298
Score = 123 (48.4 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 22/30 (73%), Positives = 28/30 (93%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+TF DV G+DEAK+EL+EIVEFL+NP+KFS
Sbjct: 153 VTFDDVAGIDEAKEELEEIVEFLRNPQKFS 182
>ASPGD|ASPL0000029469 [details] [associations]
symbol:AN5588 species:162425 "Emericella nidulans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] [GO:0031942 "i-AAA
complex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:SEFDEVY EnsemblFungi:CADANIAT00003489
Uniprot:C8VG17
Length = 784
Score = 180 (68.4 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 33/63 (52%), Positives = 48/63 (76%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A+RVR+LF A+ ++P ++FIDE+D++GAKR N Y QT+NQLL E+DGF Q+ GV
Sbjct: 393 AKRVRELFNQARSKSPAIIFIDELDAIGAKR-NERDAAYVKQTLNQLLTELDGFSQSTGV 451
Query: 111 VVL 113
++L
Sbjct: 452 IIL 454
Score = 117 (46.2 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFST 38
PE + F DV G DEAK EL+E+VEFL NPE+FS+
Sbjct: 307 PEHQTVRFSDVHGCDEAKDELQELVEFLLNPERFSS 342
>TAIR|locus:2009235 [details] [associations]
symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
Genevestigator:Q8W585 Uniprot:Q8W585
Length = 685
Score = 180 (68.4 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLFK AK+ PC+VF+DEID+VG +R + + QT+NQLL EMDGF N
Sbjct: 298 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 357
Query: 109 GVVVL 113
GV+V+
Sbjct: 358 GVIVV 362
Score = 111 (44.1 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 20/30 (66%), Positives = 25/30 (83%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+TF DV GVDEAKQ+ E+VEFLK PE+F+
Sbjct: 217 VTFDDVAGVDEAKQDFMEVVEFLKKPERFT 246
>TAIR|locus:2052806 [details] [associations]
symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
"thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
"chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA;TAS]
[GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
process" evidence=IDA] [GO:0072593 "reactive oxygen species
metabolic process" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
catabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0010206
"photosystem II repair" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
Genevestigator:O80860 Uniprot:O80860
Length = 695
Score = 180 (68.4 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLFK AK+ PC+VF+DEID+VG +R + + QT+NQLL EMDGF N
Sbjct: 305 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 364
Query: 109 GVVVL 113
GV+V+
Sbjct: 365 GVIVV 369
Score = 111 (44.1 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 20/30 (66%), Positives = 25/30 (83%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+TF DV GVDEAKQ+ E+VEFLK PE+F+
Sbjct: 224 VTFDDVAGVDEAKQDFMEVVEFLKKPERFT 253
Score = 34 (17.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 78 GAKRTNSVLHPYANQTINQLLAEMDGFHQNEG 109
G + S+ + +I++++A M+G +G
Sbjct: 448 GRRARTSISSKEIDDSIDRIVAGMEGTVMTDG 479
>TAIR|locus:2057386 [details] [associations]
symbol:ftsh4 "FTSH protease 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=ISS] [GO:0016020
"membrane" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0009536 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0005743 GO:GO:0046872 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
EMBL:AC004747 GO:GO:0004176 HOGENOM:HOG000217276 EMBL:AK220842
IPI:IPI00534293 PIR:T02610 RefSeq:NP_565616.1 UniGene:At.23415
ProteinModelPortal:O80983 SMR:O80983 STRING:O80983 MEROPS:M41.004
PaxDb:O80983 PRIDE:O80983 EnsemblPlants:AT2G26140.1 GeneID:817154
KEGG:ath:AT2G26140 GeneFarm:2508 TAIR:At2g26140 InParanoid:O80983
OMA:HTEGALP PhylomeDB:O80983 ProtClustDB:CLSN2688437
Genevestigator:O80983 Uniprot:O80983
Length = 717
Score = 193 (73.0 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 36/63 (57%), Positives = 47/63 (74%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
ARRVRDLF AAK +PC++FIDEID++G R N Y T+NQ+L E+DGF QNEG+
Sbjct: 305 ARRVRDLFSAAKKCSPCIIFIDEIDAIGGSR-NPKDQQYMKMTLNQMLVELDGFKQNEGI 363
Query: 111 VVL 113
+V+
Sbjct: 364 IVV 366
Score = 98 (39.6 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 1 VDPEEINIT-FKDVRGVDEAKQELKEIVEFLKNPEKFS 37
V P + T F DV+GVDEAK EL+EIV +L++P++F+
Sbjct: 216 VQPSMDSSTKFSDVKGVDEAKAELEEIVHYLRDPKRFT 253
>TIGR_CMR|GSU_1809 [details] [associations]
symbol:GSU_1809 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952859.2 GeneID:2688702 KEGG:gsu:GSU1809 PATRIC:22026473
ProtClustDB:CLSK828573 BioCyc:GSUL243231:GH27-1860-MONOMER
Uniprot:Q74C66
Length = 610
Score = 173 (66.0 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF K PC++FIDEID+VG R + H QT+NQLL EMDGF NE
Sbjct: 231 ASRVRDLFVQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNE 290
Query: 109 GVVVL 113
GV+++
Sbjct: 291 GVILI 295
Score = 116 (45.9 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
Identities = 20/30 (66%), Positives = 29/30 (96%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+TF+DV GVDEAK+EL+EI++FLK+P+KF+
Sbjct: 150 VTFEDVAGVDEAKEELEEIIQFLKDPKKFT 179
>DICTYBASE|DDB_G0267492 [details] [associations]
symbol:DDB_G0267492 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0267492 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
EMBL:AAFI02000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 RefSeq:XP_647076.1
ProteinModelPortal:Q55GV8 SMR:Q55GV8 MEROPS:M41.A18
EnsemblProtists:DDB0189322 GeneID:8615880 KEGG:ddi:DDB_G0267492
OMA:RINENNQ Uniprot:Q55GV8
Length = 720
Score = 186 (70.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQNEG 109
A+RVR+LF+AA+ +PC+VFIDEIDSVG RT V HP ++ +NQLL E+DGF EG
Sbjct: 242 AKRVRELFEAARKNSPCIVFIDEIDSVGGSRTKRVNYHP--SEALNQLLVELDGFDGREG 299
Query: 110 VVVL 113
V+V+
Sbjct: 300 VMVM 303
Score = 104 (41.7 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
E N TF DV G +EAK EL+++V+FL+NPEK+
Sbjct: 157 ERPNTTFADVMGAEEAKGELQDLVDFLRNPEKY 189
>UNIPROTKB|P37476 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0008233 "peptidase activity" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IDA] [GO:0030428 "cell septum"
evidence=IDA] [GO:0043934 "sporulation" evidence=IMP]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0006950 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0007049
GO:GO:0030163 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0043934
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0008233
GO:GO:0030428 EMBL:D26185 HOGENOM:HOG000217276 KO:K03798 PIR:E69627
RefSeq:NP_387950.1 ProteinModelPortal:P37476 SMR:P37476
IntAct:P37476 MEROPS:M41.009 EnsemblBacteria:EBBACT00000001428
GeneID:938094 KEGG:bsu:BSU00690 PATRIC:18971613 GenoList:BSU00690
OMA:ENMSYST ProtClustDB:CLSK886567 BioCyc:BSUB:BSU00690-MONOMER
Uniprot:P37476
Length = 637
Score = 178 (67.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF+ AK PC++FIDEID+VG +R + H QT+NQLL EMDGF NE
Sbjct: 239 ASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANE 298
Query: 109 GVVVL 113
G++++
Sbjct: 299 GIIII 303
Score = 110 (43.8 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E+ + FKDV G DE KQEL E+VEFLK+P KF+
Sbjct: 154 EKKRVKFKDVAGADEEKQELVEVVEFLKDPRKFA 187
Score = 39 (18.8 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 7 NITFKDVRGVDEAKQELK 24
+++ + VRGV E K +LK
Sbjct: 51 SVSVQPVRGVYEVKGQLK 68
>TIGR_CMR|CBU_1352 [details] [associations]
symbol:CBU_1352 "ATP-dependent metalloprotease FtsH"
species:227377 "Coxiella burnetii RSA 493" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HSSP:P28691 HOGENOM:HOG000217276 KO:K03798
MEROPS:M41.001 OMA:RSIIDQC RefSeq:NP_820341.1
ProteinModelPortal:Q83BY5 SMR:Q83BY5 PRIDE:Q83BY5 GeneID:1209258
KEGG:cbu:CBU_1352 PATRIC:17931447 ProtClustDB:CLSK914722
BioCyc:CBUR227377:GJ7S-1342-MONOMER Uniprot:Q83BY5
Length = 647
Score = 171 (65.3 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 34/65 (52%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F AK + PC++FIDEID+VG R + H QT+NQLL EMDGF E
Sbjct: 234 ASRVRDMFDQAKKQAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGKE 293
Query: 109 GVVVL 113
G++V+
Sbjct: 294 GIIVM 298
Score = 117 (46.2 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 20/33 (60%), Positives = 29/33 (87%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+++ +TF DV GVDEAK+E+KE+VEFL++P KF
Sbjct: 149 DQVKVTFDDVAGVDEAKEEVKELVEFLRDPGKF 181
>TIGR_CMR|BA_0064 [details] [associations]
symbol:BA_0064 "cell division protein FtsH" species:198094
"Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
Uniprot:Q81VX5
Length = 633
Score = 179 (68.1 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF+ AK PC++FIDEID+VG +R + H QT+NQLL EMDGF NE
Sbjct: 240 ASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANE 299
Query: 109 GVVVL 113
G++++
Sbjct: 300 GIIII 304
Score = 107 (42.7 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E+ + F+DV G DE KQEL E+VEFLK+P KF+
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFA 188
>TAIR|locus:2157637 [details] [associations]
symbol:VAR1 "VARIEGATED 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA;IDA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=RCA;TAS] [GO:0009579 "thylakoid" evidence=IDA] [GO:0010205
"photoinhibition" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0007275 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006508 GO:GO:0009941
GO:GO:0004222 GO:GO:0016887 EMBL:AB023032 GO:GO:0010205
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0009535
HOGENOM:HOG000217276 KO:K03798 ProtClustDB:CLSN2688633
GO:GO:0010304 EMBL:AY126987 IPI:IPI00517420 RefSeq:NP_568604.1
UniGene:At.21670 UniGene:At.66720 ProteinModelPortal:Q9FH02
SMR:Q9FH02 STRING:Q9FH02 MEROPS:M41.024 PaxDb:Q9FH02 PRIDE:Q9FH02
EnsemblPlants:AT5G42270.1 GeneID:834232 KEGG:ath:AT5G42270
GeneFarm:4746 TAIR:At5g42270 InParanoid:Q9FH02 OMA:RARASMP
PhylomeDB:Q9FH02 Genevestigator:Q9FH02 GermOnline:AT5G42270
Uniprot:Q9FH02
Length = 704
Score = 178 (67.7 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF+ AK + PC+VFIDEID+VG +R + + QTINQLL EMDGF N
Sbjct: 328 ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNS 387
Query: 109 GVVVL 113
GV+VL
Sbjct: 388 GVIVL 392
Score = 109 (43.4 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E +TF DV G D+AK EL+E+V+FLKNP+K++
Sbjct: 244 ETGVTFGDVAGADQAKLELQEVVDFLKNPDKYT 276
>SGD|S000006228 [details] [associations]
symbol:YME1 "Catalytic subunit of the mitochondrial inner
membrane i-AAA protease" species:4932 "Saccharomyces cerevisiae"
[GO:0006457 "protein folding" evidence=IMP] [GO:0005743
"mitochondrial inner membrane" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IGI;IMP]
[GO:0006515 "misfolded or incompletely synthesized protein
catabolic process" evidence=IMP] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0031942 "i-AAA complex"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
SGD:S000006228 GO:GO:0005524 GO:GO:0006457 GO:GO:0046872
GO:GO:0004222 EMBL:Z71255 EMBL:BK006949 GO:GO:0006515
eggNOG:COG0465 TIGRFAMs:TIGR01241 EMBL:Z49274 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942
GeneTree:ENSGT00550000074836 KO:K08955 OrthoDB:EOG4FR40W
EMBL:L14616 EMBL:X81067 EMBL:D16332 PIR:S54498 RefSeq:NP_015349.1
ProteinModelPortal:P32795 SMR:P32795 IntAct:P32795 STRING:P32795
PaxDb:P32795 PeptideAtlas:P32795 EnsemblFungi:YPR024W GeneID:856135
KEGG:sce:YPR024W CYGD:YPR024w OMA:SEFDEVY NextBio:981236
Genevestigator:P32795 GermOnline:YPR024W Uniprot:P32795
Length = 747
Score = 183 (69.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 32/63 (50%), Positives = 46/63 (73%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A+R+RDLF A+ R P ++FIDE+D++G KR N YA QT+NQLL E+DGF Q G+
Sbjct: 359 AKRIRDLFAQARSRAPAIIFIDELDAIGGKR-NPKDQAYAKQTLNQLLVELDGFSQTSGI 417
Query: 111 VVL 113
+++
Sbjct: 418 III 420
Score = 104 (41.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFST 38
VD + N+ F DV G DEA+ EL+EIV+FLK+P K+ +
Sbjct: 271 VDVAKTNVKFDDVCGCDEARAELEEIVDFLKDPTKYES 308
>TAIR|locus:2011952 [details] [associations]
symbol:FTSH1 "FTSH protease 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0010206 "photosystem II repair"
evidence=TAS] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0007275
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 eggNOG:COG0465
TIGRFAMs:TIGR01241 GO:GO:0009535 GO:GO:0031977 GO:GO:0004176
GO:GO:0010206 EMBL:AC007980 EMBL:X99808 EMBL:AY091095 EMBL:AY123034
EMBL:Y12780 IPI:IPI00518805 PIR:G96538 RefSeq:NP_564563.1
UniGene:At.21777 ProteinModelPortal:Q39102 SMR:Q39102 STRING:Q39102
MEROPS:M41.020 PaxDb:Q39102 PRIDE:Q39102 EnsemblPlants:AT1G50250.1
GeneID:841447 KEGG:ath:AT1G50250 GeneFarm:2667 TAIR:At1g50250
HOGENOM:HOG000217276 InParanoid:Q39102 KO:K03798 OMA:GGNPAMN
PhylomeDB:Q39102 ProtClustDB:CLSN2688633 Genevestigator:Q39102
GermOnline:AT1G50250 GO:GO:0010304 Uniprot:Q39102
Length = 716
Score = 178 (67.7 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF+ AK + PC+VFIDEID+VG +R + + QTINQLL EMDGF N
Sbjct: 340 ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNS 399
Query: 109 GVVVL 113
GV+VL
Sbjct: 400 GVIVL 404
Score = 106 (42.4 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
E ++F DV G D+AK EL+E+V+FLKNP+K++
Sbjct: 256 ETGVSFADVAGADQAKLELQEVVDFLKNPDKYT 288
>UNIPROTKB|Q9KU86 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
Uniprot:Q9KU86
Length = 651
Score = 181 (68.8 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ AK +PC++FIDEID+VG +R V H QT+NQ+L EMDGF NE
Sbjct: 234 ASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNE 293
Query: 109 GVVVL 113
G++V+
Sbjct: 294 GIIVI 298
Score = 100 (40.3 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 16/33 (48%), Positives = 27/33 (81%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++I TF DV G DEAK+++KE+V++L++P +F
Sbjct: 149 DQIKTTFSDVAGCDEAKEDVKELVDYLRDPSRF 181
>TIGR_CMR|VC_0637 [details] [associations]
symbol:VC_0637 "cell division protein FtsH" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
ProtClustDB:CLSK874054 Uniprot:Q9KU86
Length = 651
Score = 181 (68.8 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ AK +PC++FIDEID+VG +R V H QT+NQ+L EMDGF NE
Sbjct: 234 ASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNE 293
Query: 109 GVVVL 113
G++V+
Sbjct: 294 GIIVI 298
Score = 100 (40.3 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 16/33 (48%), Positives = 27/33 (81%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++I TF DV G DEAK+++KE+V++L++P +F
Sbjct: 149 DQIKTTFSDVAGCDEAKEDVKELVDYLRDPSRF 181
>TIGR_CMR|SO_1197 [details] [associations]
symbol:SO_1197 "ATP-dependent metalloprotease FtsH"
species:211586 "Shewanella oneidensis MR-1" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0051301 "cell division" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006200
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
OMA:RSIIDQC RefSeq:NP_716822.2 ProteinModelPortal:Q8EHM2 SMR:Q8EHM2
GeneID:1169025 KEGG:son:SO_1197 PATRIC:23522048
ProtClustDB:CLSK906146 Uniprot:Q8EHM2
Length = 652
Score = 177 (67.4 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ AK PC++FIDEID+VG +R + H QT+NQ+L EMDGF NE
Sbjct: 235 ASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 294
Query: 109 GVVVL 113
G++V+
Sbjct: 295 GIIVI 299
Score = 104 (41.7 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++I TF DV G DEAK+E+KE+V++L++P KF
Sbjct: 150 DQIKTTFADVAGCDEAKEEVKELVDYLRDPTKF 182
>UNIPROTKB|Q55700 [details] [associations]
symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
[GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
"thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
OMA:NTASTRM Uniprot:Q55700
Length = 627
Score = 175 (66.7 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLFK AK+ PC++FIDEID+VG +R + + QT+NQLL EMDGF N
Sbjct: 250 ASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNT 309
Query: 109 GVVVL 113
G++++
Sbjct: 310 GIIII 314
Score = 104 (41.7 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+ F DV G+DEAK+EL+E+V FLK PE+F+
Sbjct: 169 VMFDDVAGIDEAKEELQEVVTFLKQPERFT 198
>UNIPROTKB|P0AAI3 [details] [associations]
symbol:ftsH species:83333 "Escherichia coli K-12"
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
"proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
[GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
"integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
Length = 644
Score = 177 (67.4 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ AK PC++FIDEID+VG +R + H QT+NQ+L EMDGF NE
Sbjct: 230 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289
Query: 109 GVVVL 113
G++V+
Sbjct: 290 GIIVI 294
Score = 98 (39.6 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++I TF DV G DEAK+E+ E+VE+L+ P +F
Sbjct: 145 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRF 177
Score = 38 (18.4 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 58 FKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106
F+ AKD+ + A++ ++ H + I +L+ E D H+
Sbjct: 385 FEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHK 433
Score = 33 (16.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 1 VDPEEINITFKD 12
++ EIN+T KD
Sbjct: 51 INGREINVTKKD 62
>TIGR_CMR|NSE_0423 [details] [associations]
symbol:NSE_0423 "ATP-dependent metalloprotease FtsH"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001 RefSeq:YP_506309.1
ProteinModelPortal:Q2GDY7 SMR:Q2GDY7 STRING:Q2GDY7 GeneID:3931660
KEGG:nse:NSE_0423 PATRIC:22680905 OMA:ENIESLH
ProtClustDB:CLSK749654 BioCyc:NSEN222891:GHFU-445-MONOMER
Uniprot:Q2GDY7
Length = 636
Score = 163 (62.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ K PC++FIDEID+VG R + QT+NQLL EMDGF NE
Sbjct: 235 ASRVRDMFEQGKKNAPCLIFIDEIDAVGRHRGVGFGGGNDEREQTLNQLLVEMDGFEANE 294
Query: 109 GVVVL 113
GV+++
Sbjct: 295 GVIII 299
Score = 110 (43.8 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+TF DV G+DEAK+EL EIVEFL+ P+KF
Sbjct: 154 VTFHDVAGIDEAKEELAEIVEFLREPKKF 182
>TIGR_CMR|CPS_3452 [details] [associations]
symbol:CPS_3452 "ATP-dependent metalloprotease FtsH"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 OMA:RSIIDQC
RefSeq:YP_270126.1 ProteinModelPortal:Q47YJ4 SMR:Q47YJ4
STRING:Q47YJ4 GeneID:3519317 KEGG:cps:CPS_3452 PATRIC:21469851
BioCyc:CPSY167879:GI48-3480-MONOMER Uniprot:Q47YJ4
Length = 660
Score = 178 (67.7 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ AK PC++FIDEID+VG +R + H QT+NQ+L EMDGF NE
Sbjct: 232 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQMLVEMDGFEGNE 291
Query: 109 GVVVL 113
GV+V+
Sbjct: 292 GVIVI 296
Score = 95 (38.5 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
E+I TF DV G DEAK+++ E+V++L+ P +F
Sbjct: 147 EQIKTTFADVAGCDEAKEDVAELVDYLREPSRF 179
>TIGR_CMR|CJE_1085 [details] [associations]
symbol:CJE_1085 "cell division protein FtsH, putative"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0051301 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0465 GO:GO:0017111 HOGENOM:HOG000217276 KO:K01417
RefSeq:YP_179078.1 ProteinModelPortal:Q5HUF7 SMR:Q5HUF7
STRING:Q5HUF7 GeneID:3231594 KEGG:cjr:CJE1085 PATRIC:20043979
OMA:HRSDERE ProtClustDB:CLSK2395802
BioCyc:CJEJ195099:GJC0-1111-MONOMER Uniprot:Q5HUF7
Length = 538
Score = 157 (60.3 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A+RVR+LF AK P +VFIDEID+VG R + + + T+NQLL +MDGF N GV
Sbjct: 230 AKRVRELFSKAKMMAPSIVFIDEIDAVGKAR-GEMSNVERDSTLNQLLTQMDGFEDNSGV 288
Query: 111 VVL 113
+V+
Sbjct: 289 IVI 291
Score = 113 (44.8 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+ P NITF DV GVDE K EL E+V+FL+NP+K+
Sbjct: 142 IKPVISNITFNDVAGVDEVKMELSELVDFLQNPKKY 177
>DICTYBASE|DDB_G0272120 [details] [associations]
symbol:rcaA "peptidase M41, FtsH domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0272120 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GenomeReviews:CM000151_GR GO:GO:0004222
EMBL:AAFI02000008 GO:GO:0030163 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 ProtClustDB:CLSZ2846729 RefSeq:XP_645267.1
ProteinModelPortal:Q75JS8 SMR:Q75JS8 STRING:Q75JS8
EnsemblProtists:DDB0185211 GeneID:8618433 KEGG:ddi:DDB_G0272120
InParanoid:Q75JS8 OMA:ERTIVAH Uniprot:Q75JS8
Length = 844
Score = 175 (66.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 36/61 (59%), Positives = 42/61 (68%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ-TINQLLAEMDGFHQNEGVV 111
RVRDLFK A+ TPC+VFIDEID+VG R+ H + T+NQLL EMDGF GVV
Sbjct: 434 RVRDLFKEARANTPCIVFIDEIDAVGRARSRGGFHNDERENTLNQLLVEMDGFSSTSGVV 493
Query: 112 V 112
V
Sbjct: 494 V 494
Score = 97 (39.2 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 9 TFKDVRGVDEAKQELKEIVEFLKNPEKF 36
TFKDV G+DEAK+E+ E V FLK+P ++
Sbjct: 352 TFKDVAGMDEAKEEIMEFVSFLKDPSRY 379
Score = 31 (16.0 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 11 KDVRGVDEAKQELKEIVEFLKNPEK 35
KD + +E K+E KE E +N E+
Sbjct: 145 KDEKEKEE-KEEEKENKEEKENEEE 168
>TAIR|locus:2075581 [details] [associations]
symbol:ftsh7 "FTSH protease 7" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
GO:GO:0009535 EMBL:AL133292 GO:GO:0004176 HOGENOM:HOG000217276
KO:K03798 EMBL:AY099737 EMBL:BT000368 IPI:IPI00522102 PIR:T45642
RefSeq:NP_566889.1 UniGene:At.43767 ProteinModelPortal:Q9SD67
SMR:Q9SD67 MEROPS:M41.A04 PaxDb:Q9SD67 PRIDE:Q9SD67
EnsemblPlants:AT3G47060.1 GeneID:823859 KEGG:ath:AT3G47060
GeneFarm:2514 TAIR:At3g47060 InParanoid:Q9SD67 OMA:SNQVQKV
PhylomeDB:Q9SD67 ProtClustDB:CLSN2689036 Genevestigator:Q9SD67
Uniprot:Q9SD67
Length = 802
Score = 150 (57.9 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 33/66 (50%), Positives = 39/66 (59%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQN 107
A RVRDLF AK P ++FIDEID+V R + QT+NQLL EMDGF N
Sbjct: 403 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSN 462
Query: 108 EGVVVL 113
V+VL
Sbjct: 463 SAVIVL 468
Score = 121 (47.7 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
ITF DV GVDEAK+EL+EIVEFL+NPEK+
Sbjct: 322 ITFADVAGVDEAKEELEEIVEFLRNPEKY 350
>UNIPROTKB|Q2GFA1 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST
MEROPS:M41.001 ProtClustDB:CLSK749654 RefSeq:YP_507882.1
ProteinModelPortal:Q2GFA1 SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708
KEGG:ech:ECH_1098 PATRIC:20577534
BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 168 (64.2 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 33/65 (50%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ K PC++FIDEID+VG R + + QT+NQLL EMDGF NE
Sbjct: 234 ASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNE 293
Query: 109 GVVVL 113
GV+++
Sbjct: 294 GVIII 298
Score = 99 (39.9 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+TF DV G+DEAK+EL EIV+FLK+ ++F
Sbjct: 153 VTFNDVAGIDEAKEELIEIVDFLKHRQRF 181
>TIGR_CMR|ECH_1098 [details] [associations]
symbol:ECH_1098 "ATP-dependent metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 GO:GO:0000910
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_507882.1 ProteinModelPortal:Q2GFA1
SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708 KEGG:ech:ECH_1098
PATRIC:20577534 BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 168 (64.2 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 33/65 (50%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ K PC++FIDEID+VG R + + QT+NQLL EMDGF NE
Sbjct: 234 ASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNE 293
Query: 109 GVVVL 113
GV+++
Sbjct: 294 GVIII 298
Score = 99 (39.9 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+TF DV G+DEAK+EL EIV+FLK+ ++F
Sbjct: 153 VTFNDVAGIDEAKEELIEIVDFLKHRQRF 181
>UNIPROTKB|Q2GIT4 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 168 (64.2 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 33/65 (50%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ K PC++F+DEID+VG R + + QT+NQLL EMDGF NE
Sbjct: 236 ASRVRDMFEQGKKHAPCIIFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNE 295
Query: 109 GVVVL 113
GVV++
Sbjct: 296 GVVII 300
Score = 98 (39.6 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 18/30 (60%), Positives = 26/30 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+TF DV G++EAK+EL EIV+FLK+ +KF+
Sbjct: 155 VTFDDVAGIEEAKEELIEIVDFLKHRQKFT 184
>TIGR_CMR|APH_1179 [details] [associations]
symbol:APH_1179 "ATP-dependent metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0000910 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 168 (64.2 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 33/65 (50%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRD+F+ K PC++F+DEID+VG R + + QT+NQLL EMDGF NE
Sbjct: 236 ASRVRDMFEQGKKHAPCIIFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNE 295
Query: 109 GVVVL 113
GVV++
Sbjct: 296 GVVII 300
Score = 98 (39.6 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 18/30 (60%), Positives = 26/30 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+TF DV G++EAK+EL EIV+FLK+ +KF+
Sbjct: 155 VTFDDVAGIEEAKEELIEIVDFLKHRQKFT 184
>TIGR_CMR|DET_0391 [details] [associations]
symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
Uniprot:Q3Z9G3
Length = 608
Score = 162 (62.1 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF AK PC++FIDEID+VG +R + H QT+NQ+L EMDGF +
Sbjct: 237 ASRVRDLFDQAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQILVEMDGFDTDT 296
Query: 109 GVVVL 113
V+V+
Sbjct: 297 SVIVI 301
Score = 104 (41.7 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
ITF +V GVDEAKQE+ E+VEFLK+ EKF
Sbjct: 156 ITFANVAGVDEAKQEVGEVVEFLKSREKF 184
>TAIR|locus:2154568 [details] [associations]
symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
Length = 806
Score = 150 (57.9 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS---VLHPYANQTINQLLAEMDGFHQN 107
A RVRDLF AK P ++FIDEID+V R V + QT+NQLL EMDGF +
Sbjct: 407 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSS 466
Query: 108 EGVVVL 113
V+VL
Sbjct: 467 SAVIVL 472
Score = 118 (46.6 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 22/29 (75%), Positives = 27/29 (93%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
ITF DV GVDEAK+EL+EIVEFLKNP+++
Sbjct: 326 ITFADVAGVDEAKEELEEIVEFLKNPDRY 354
>POMBASE|SPCC965.04c [details] [associations]
symbol:SPCC965.04c "mitochondrial inner membrane i-AAA
protease complex subunit Yme1 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0004176 "ATP-dependent peptidase
activity" evidence=ISO] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0031942 "i-AAA complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC965.04c GO:GO:0016021 GO:GO:0005524 EMBL:CU329672
GO:GO:0046872 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942 PIR:T41657
RefSeq:NP_588514.1 ProteinModelPortal:O59824 SMR:O59824
STRING:O59824 EnsemblFungi:SPCC965.04c.1 GeneID:2538746
KEGG:spo:SPCC965.04c KO:K08955 OMA:LANANMS OrthoDB:EOG4FR40W
NextBio:20799930 Uniprot:O59824
Length = 709
Score = 154 (59.3 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE 108
A+RVR+LF AA+ + P ++FIDE+D++G KR N+ + QT+NQLL ++DGF +NE
Sbjct: 345 AKRVRELFAAARKQAPSIIFIDELDAIGQKR-NARDAAHMRQTLNQLLVDLDGFSKNE 401
Score = 112 (44.5 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
++ IN+ F DV+GVDEAK+EL+EIV+FL++P F+
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDFLRDPTHFT 293
>FB|FBgn0036702 [details] [associations]
symbol:CG6512 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046331
"lateral inhibition" evidence=IMP] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AE014296
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0030163 GO:GO:0046331
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OMA:YSEDTAM HSSP:Q9LCZ4 UniGene:Dm.986 GeneID:39922
KEGG:dme:Dmel_CG6512 FlyBase:FBgn0036702 GenomeRNAi:39922
NextBio:816090 EMBL:AY084199 RefSeq:NP_730248.2 SMR:Q8T4G5
IntAct:Q8T4G5 MINT:MINT-1004758 STRING:Q8T4G5
EnsemblMetazoa:FBtr0075251 UCSC:CG6512-RA InParanoid:Q8T4G5
Uniprot:Q8T4G5
Length = 826
Score = 162 (62.1 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRD+F A+ PC++FIDEID+VG KR ++ Q T+NQLL EMDGF+ V
Sbjct: 408 RVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNV 467
Query: 111 VVL 113
VVL
Sbjct: 468 VVL 470
Score = 105 (42.0 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+P EI + FKDV G +EAK E+ E V FLKNP+++
Sbjct: 319 NPNEIGVGFKDVAGCEEAKIEIMEFVNFLKNPQQY 353
>FB|FBgn0024992 [details] [associations]
symbol:CG2658 species:7227 "Drosophila melanogaster"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9LCZ4
HOGENOM:HOG000226301 MEROPS:M41.A12 EMBL:AL023874
ProteinModelPortal:O76867 SMR:O76867 PaxDb:O76867 PRIDE:O76867
FlyBase:FBgn0024992 InParanoid:O76867 OrthoDB:EOG4V6WXK
ArrayExpress:O76867 Bgee:O76867 Uniprot:O76867
Length = 819
Score = 162 (62.1 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSV---LHPYANQTINQLLAEMDGFH 105
A RVRDLFK K R PC+++IDEID++G +R T S+ + QT+NQLL EMDG
Sbjct: 419 AARVRDLFKEGKKRAPCIIYIDEIDAIGRQRSGTESMGQGSSGESEQTLNQLLVEMDGMA 478
Query: 106 QNEGVVVL 113
EGV++L
Sbjct: 479 TKEGVLML 486
Score = 102 (41.0 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 1 VDPEE--INITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
VDP + + F+DV G+ EAKQE+KE V++LK+PEK+
Sbjct: 329 VDPFDGGRGVLFRDVAGLSEAKQEVKEFVDYLKSPEKY 366
>UNIPROTKB|A7E2Z6 [details] [associations]
symbol:SPG7 "SPG7 protein" species:9913 "Bos taurus"
[GO:0008089 "anterograde axon cargo transport" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
MEROPS:M41.006 CTD:6687 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
EMBL:DAAA02046269 EMBL:BC151632 IPI:IPI00866907
RefSeq:NP_001095492.1 UniGene:Bt.11239 SMR:A7E2Z6 STRING:A7E2Z6
Ensembl:ENSBTAT00000032500 GeneID:515269 KEGG:bta:515269
InParanoid:A7E2Z6 NextBio:20871741 Uniprot:A7E2Z6
Length = 779
Score = 165 (63.1 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LFK A+ R PC+V+IDEID+VG KR+ +V ++N QT+NQLL EMDG
Sbjct: 387 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTAV-SGFSNTEEEQTLNQLLVEMDGMGT 445
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 446 TDHVIVL 452
Score = 97 (39.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++FKDV G+ EAK E+KE V++LK+PE+F
Sbjct: 306 VSFKDVAGMHEAKLEVKEFVDYLKSPERF 334
>TIGR_CMR|CJE_1259 [details] [associations]
symbol:CJE_1259 "cell division protein FtsH"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
OMA:RARASMP RefSeq:YP_179247.1 ProteinModelPortal:Q5HTY8 SMR:Q5HTY8
STRING:Q5HTY8 GeneID:3231766 KEGG:cjr:CJE1259 PATRIC:20044314
ProtClustDB:CLSK872348 BioCyc:CJEJ195099:GJC0-1285-MONOMER
Uniprot:Q5HTY8
Length = 645
Score = 152 (58.6 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 35/67 (52%), Positives = 45/67 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFH-Q 106
A RVRDLF+ AK P +VFIDEID++G R S + + QT+NQLLAEMDGF +
Sbjct: 256 ASRVRDLFENAKKEAPAIVFIDEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTE 315
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 316 SSPVIVL 322
Score = 108 (43.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
V+ E+ + F DV GV+EAK+E+KEIV+FLK PE++
Sbjct: 168 VNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERY 203
>UNIPROTKB|I3LLQ8 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0006508 GO:GO:0040014 GO:GO:0004222 GO:GO:0042552
GO:GO:0007409 GO:GO:0030163 GeneTree:ENSGT00530000063070
GO:GO:0017111 GO:GO:0042407 GO:GO:0008053 GO:GO:0034982
TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675
GO:GO:0060013 EMBL:FP565334 Ensembl:ENSSSCT00000025900
Uniprot:I3LLQ8
Length = 597
Score = 157 (60.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 180 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 239
Query: 111 VVL 113
V+L
Sbjct: 240 VIL 242
Score = 101 (40.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 92 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 124
>UNIPROTKB|F1N9N5 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
OMA:LYRFVTT EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00683486 Ensembl:ENSGALT00000016639 ArrayExpress:F1N9N5
Uniprot:F1N9N5
Length = 635
Score = 157 (60.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 232 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 291
Query: 111 VVL 113
V+L
Sbjct: 292 VIL 294
Score = 101 (40.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 145 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 177
>UNIPROTKB|F1NXP0 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=IEA] [GO:0008089 "anterograde axon cargo
transport" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 OMA:MMDHEAK EMBL:AADN02054132
IPI:IPI00601320 Ensembl:ENSGALT00000010016 Uniprot:F1NXP0
Length = 768
Score = 164 (62.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LF+ A+ R PC+V+IDEID+VG KR+ +V +AN QT+NQLL EMDG
Sbjct: 360 AARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNV-SGFANAEEEQTLNQLLVEMDGMGT 418
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 419 TDHVIVL 425
Score = 96 (38.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
I FKDV G+ EAK E+KE V++LKNP+++
Sbjct: 279 IGFKDVAGMHEAKMEVKEFVDYLKNPDRY 307
>ZFIN|ZDB-GENE-030131-5391 [details] [associations]
symbol:spg7 "spastic paraplegia 7" species:7955
"Danio rerio" [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382
ZFIN:ZDB-GENE-030131-5391 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:6687 KO:K09552 OMA:MMDHEAK EMBL:AL954648 EMBL:BX470191
IPI:IPI00483001 RefSeq:XP_001923118.1 UniGene:Dr.105782
Ensembl:ENSDART00000098438 GeneID:794740 KEGG:dre:794740
NextBio:20931970 Uniprot:E7F2S4
Length = 788
Score = 163 (62.4 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LFK A+ R PC+V+IDEID+VG KR+ + + ++N QT+NQLL EMDG
Sbjct: 378 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTN-MSGFSNTEEEQTLNQLLVEMDGMGT 436
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 437 TDHVIVL 443
Score = 97 (39.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++FKDV G+ EAK E+KE V++LKNP+++
Sbjct: 297 VSFKDVAGMREAKMEVKEFVDYLKNPDRY 325
>UNIPROTKB|E2R4F3 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 CTD:6687 KO:K09552 OMA:MMDHEAK
EMBL:AAEX03003953 EMBL:AAEX03003954 RefSeq:XP_546777.3
Ensembl:ENSCAFT00000031561 GeneID:489657 KEGG:cfa:489657
NextBio:20862809 Uniprot:E2R4F3
Length = 793
Score = 163 (62.4 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LFK A+ R PC+V+IDEID+VG KR+ + + ++N QT+NQLL EMDG
Sbjct: 387 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT-MSGFSNTEEEQTLNQLLVEMDGMGT 445
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 446 TDHVIVL 452
Score = 97 (39.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++FKDV G+ EAK E+KE V++LK+PE+F
Sbjct: 306 VSFKDVAGMHEAKLEVKEFVDYLKSPERF 334
>CGD|CAL0004443 [details] [associations]
symbol:orf19.2057 species:5476 "Candida albicans" [GO:0005745
"m-AAA complex" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 CGD:CAL0004443 GO:GO:0016021
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 EMBL:AACQ01000031 EMBL:AACQ01000030
MEROPS:M41.003 RefSeq:XP_719505.1 RefSeq:XP_719629.1
ProteinModelPortal:Q5AD10 SMR:Q5AD10 GeneID:3638753 GeneID:3638884
KEGG:cal:CaO19.2057 KEGG:cal:CaO19.9604 Uniprot:Q5AD10
Length = 846
Score = 156 (60.0 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT--NSV-LHPYANQTINQLLAEMDGFHQN 107
A RVRDLFK A++ P +VF+DEID++G +R+ N+ + T+NQLL EMDGF +
Sbjct: 451 ASRVRDLFKTARENAPSIVFVDEIDAIGKQRSKGNATGANDERETTLNQLLVEMDGFDTS 510
Query: 108 EGVVVL 113
+ VVVL
Sbjct: 511 DHVVVL 516
Score = 104 (41.7 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++ I FKDV G+ EAKQE+ E V+FL+NPEK+
Sbjct: 367 DVKIKFKDVAGMAEAKQEVMEFVKFLQNPEKY 398
Score = 33 (16.7 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 10 FKDVRGVDEAKQELKEIV 27
F++++GV+ +L +I+
Sbjct: 12 FEEIKGVNTLYPDLVDII 29
>UNIPROTKB|P0C5C0 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006508 "proteolysis" evidence=IMP;IDA] [GO:0006979 "response
to oxidative stress" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0040007
"growth" evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0040007 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
EMBL:BX842583 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0010468
HOGENOM:HOG000217276 KO:K03798 PIR:C70956 RefSeq:NP_218127.1
RefSeq:NP_338259.1 RefSeq:YP_006517099.1 ProteinModelPortal:P0C5C0
SMR:P0C5C0 PRIDE:P0C5C0 EnsemblBacteria:EBMYCT00000001212
EnsemblBacteria:EBMYCT00000069111 GeneID:13317218 GeneID:885732
GeneID:926520 KEGG:mtc:MT3714 KEGG:mtu:Rv3610c KEGG:mtv:RVBD_3610c
PATRIC:18129921 TubercuList:Rv3610c OMA:RSEMIAR
ProtClustDB:CLSK792593 Uniprot:P0C5C0
Length = 760
Score = 169 (64.5 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF+ AK +PC++F+DEID+VG +R + H QT+NQLL EMDGF
Sbjct: 241 ASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRA 300
Query: 109 GVVVL 113
GV+++
Sbjct: 301 GVILI 305
Score = 89 (36.4 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 9 TFKDVRGVDEAKQELKEIVEFLKNPEKF 36
TF DV GVDEA +EL EI +FL+NP ++
Sbjct: 161 TFADVAGVDEAVEELYEIKDFLQNPSRY 188
>CGD|CAL0000075 [details] [associations]
symbol:AFG3 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005745 "m-AAA complex"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 160 (61.4 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 32/65 (49%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLFK A++ P ++F+DEID++G +R N + + T+NQLL EMDGF +
Sbjct: 365 ASRVRDLFKTAREMAPAIIFVDEIDAIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTD 424
Query: 109 GVVVL 113
VVVL
Sbjct: 425 HVVVL 429
Score = 98 (39.6 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
E+ I FKDV G DE+K+E+ E V+FL++P K+
Sbjct: 281 EVKIKFKDVAGCDESKEEIMEFVKFLQDPHKY 312
>UNIPROTKB|Q5AJC2 [details] [associations]
symbol:AFG3 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 160 (61.4 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 32/65 (49%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLFK A++ P ++F+DEID++G +R N + + T+NQLL EMDGF +
Sbjct: 365 ASRVRDLFKTAREMAPAIIFVDEIDAIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTD 424
Query: 109 GVVVL 113
VVVL
Sbjct: 425 HVVVL 429
Score = 98 (39.6 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
E+ I FKDV G DE+K+E+ E V+FL++P K+
Sbjct: 281 EVKIKFKDVAGCDESKEEIMEFVKFLQDPHKY 312
>UNIPROTKB|Q9Y4W6 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9606 "Homo
sapiens" [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0007528
"neuromuscular junction development" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0021675 "nerve
development" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051082 "unfolded protein binding" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0008219 DrugBank:DB00171 GO:GO:0007528 GO:GO:0051082
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 eggNOG:COG0465
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 GO:GO:0021675 GO:GO:0060013 EMBL:Y18314 EMBL:BC065016
IPI:IPI00001091 RefSeq:NP_006787.2 UniGene:Hs.726355 PDB:2LNA
PDBsum:2LNA ProteinModelPortal:Q9Y4W6 SMR:Q9Y4W6 IntAct:Q9Y4W6
MINT:MINT-1161944 STRING:Q9Y4W6 MEROPS:M41.007 PhosphoSite:Q9Y4W6
DMDM:126302516 PaxDb:Q9Y4W6 PeptideAtlas:Q9Y4W6 PRIDE:Q9Y4W6
Ensembl:ENST00000269143 GeneID:10939 KEGG:hsa:10939 UCSC:uc002kqz.2
GeneCards:GC18M012328 H-InvDB:HIX0027367 HGNC:HGNC:315
HPA:HPA004479 HPA:HPA004480 MIM:604581 MIM:610246 MIM:614487
neXtProt:NX_Q9Y4W6 Orphanet:101109 PharmGKB:PA24612
InParanoid:Q9Y4W6 PhylomeDB:Q9Y4W6 GenomeRNAi:10939 NextBio:41551
ArrayExpress:Q9Y4W6 Bgee:Q9Y4W6 CleanEx:HS_AFG3L2
Genevestigator:Q9Y4W6 GermOnline:ENSG00000141385 Uniprot:Q9Y4W6
Length = 797
Score = 157 (60.3 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 388 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 447
Query: 111 VVL 113
V+L
Sbjct: 448 VIL 450
Score = 101 (40.6 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 301 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 333
>MGI|MGI:1916847 [details] [associations]
symbol:Afg3l2 "AFG3(ATPase family gene 3)-like 2 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IGI] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0008053 "mitochondrial fusion"
evidence=IGI] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016265 "death" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0021675 "nerve development" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IGI] [GO:0040014
"regulation of multicellular organism growth" evidence=IMP]
[GO:0042407 "cristae formation" evidence=IGI] [GO:0042552
"myelination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IMP]
[GO:0060013 "righting reflex" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1916847
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
MEROPS:M41.007 EMBL:BC036999 EMBL:BC043056 IPI:IPI00170357
RefSeq:NP_081406.1 UniGene:Mm.426052 ProteinModelPortal:Q8JZQ2
SMR:Q8JZQ2 IntAct:Q8JZQ2 STRING:Q8JZQ2 PhosphoSite:Q8JZQ2
PaxDb:Q8JZQ2 PRIDE:Q8JZQ2 Ensembl:ENSMUST00000025408 GeneID:69597
KEGG:mmu:69597 UCSC:uc008fmf.1 InParanoid:Q8JZQ2 NextBio:329880
Bgee:Q8JZQ2 CleanEx:MM_AFG3L2 Genevestigator:Q8JZQ2
GermOnline:ENSMUSG00000024527 Uniprot:Q8JZQ2
Length = 802
Score = 157 (60.3 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 387 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 446
Query: 111 VVL 113
V+L
Sbjct: 447 VIL 449
Score = 101 (40.6 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 300 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 332
>UNIPROTKB|F1LN92 [details] [associations]
symbol:Afg3l2 "Protein Afg3l2" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016265 "death" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0021675 "nerve development" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1305259
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
IPI:IPI00192903 RefSeq:NP_001128336.1 UniGene:Rn.8386
ProteinModelPortal:F1LN92 PRIDE:F1LN92 Ensembl:ENSRNOT00000024632
GeneID:307350 KEGG:rno:307350 NextBio:657254 ArrayExpress:F1LN92
Uniprot:F1LN92
Length = 802
Score = 157 (60.3 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 387 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 446
Query: 111 VVL 113
V+L
Sbjct: 447 VIL 449
Score = 101 (40.6 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 300 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 332
>UNIPROTKB|E1BZ74 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0016265 "death" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0042407 "cristae formation" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0060013 "righting
reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0008270 GO:GO:0006508
GO:GO:0040014 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 GO:GO:0016265
GO:GO:0060013 EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00603273 Ensembl:ENSGALT00000022474 ArrayExpress:E1BZ74
Uniprot:E1BZ74
Length = 805
Score = 157 (60.3 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 388 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 447
Query: 111 VVL 113
V+L
Sbjct: 448 VIL 450
Score = 101 (40.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 301 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 333
>UNIPROTKB|Q2KJI7 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9913 "Bos
taurus" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0046872 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 MEROPS:M41.016
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:BC105322 IPI:IPI00686580 RefSeq:NP_001039676.1 UniGene:Bt.1657
HSSP:Q9WZ49 ProteinModelPortal:Q2KJI7 SMR:Q2KJI7 STRING:Q2KJI7
PRIDE:Q2KJI7 Ensembl:ENSBTAT00000031029 GeneID:515757
KEGG:bta:515757 CTD:10939 InParanoid:Q2KJI7 OMA:LYRFVTT
NextBio:20871990 GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
Uniprot:Q2KJI7
Length = 805
Score = 157 (60.3 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 389 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 448
Query: 111 VVL 113
V+L
Sbjct: 449 VIL 451
Score = 101 (40.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 302 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 334
>UNIPROTKB|E2QYF3 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060013 "righting reflex" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0042407 "cristae
formation" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
EMBL:AAEX03005521 RefSeq:XP_547682.2 ProteinModelPortal:E2QYF3
Ensembl:ENSCAFT00000029872 GeneID:490560 KEGG:cfa:490560
Uniprot:E2QYF3
Length = 806
Score = 157 (60.3 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 389 RVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNV 448
Query: 111 VVL 113
V+L
Sbjct: 449 VIL 451
Score = 101 (40.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 302 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 334
>UNIPROTKB|Q9UQ90 [details] [associations]
symbol:SPG7 "Paraplegin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0031966 "mitochondrial membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004222
"metalloendopeptidase activity" evidence=IDA] [GO:0005739
"mitochondrion" evidence=TAS] [GO:0051082 "unfolded protein
binding" evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] [GO:0008233 "peptidase activity" evidence=TAS]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0007399 GO:GO:0031966 GO:GO:0046872
GO:GO:0008219 GO:GO:0051082 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 EMBL:Y16610 EMBL:AF080525
EMBL:AF080511 EMBL:AF080512 EMBL:AF080513 EMBL:AF080514
EMBL:AF080515 EMBL:AF080516 EMBL:AF080517 EMBL:AF080518
EMBL:AF080519 EMBL:AF080520 EMBL:AF080521 EMBL:AF080522
EMBL:AF080523 EMBL:AF080524 EMBL:BC007692 EMBL:BC035929
EMBL:BC036104 EMBL:BC110530 EMBL:BC110531 IPI:IPI00299010
IPI:IPI00398508 RefSeq:NP_003110.1 RefSeq:NP_955399.1
UniGene:Hs.185597 PDB:2QZ4 PDBsum:2QZ4 ProteinModelPortal:Q9UQ90
SMR:Q9UQ90 IntAct:Q9UQ90 STRING:Q9UQ90 MEROPS:M41.006
PhosphoSite:Q9UQ90 DMDM:116242796 PaxDb:Q9UQ90 PRIDE:Q9UQ90
DNASU:6687 Ensembl:ENST00000268704 Ensembl:ENST00000341316
GeneID:6687 KEGG:hsa:6687 UCSC:uc002fni.3 UCSC:uc002fnj.3 CTD:6687
GeneCards:GC16P089574 HGNC:HGNC:11237 MIM:602783 MIM:607259
neXtProt:NX_Q9UQ90 Orphanet:99013 PharmGKB:PA36067
InParanoid:Q9UQ90 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
PhylomeDB:Q9UQ90 ChiTaRS:SPG7 EvolutionaryTrace:Q9UQ90
GenomeRNAi:6687 NextBio:26057 ArrayExpress:Q9UQ90 Bgee:Q9UQ90
CleanEx:HS_SPG7 Genevestigator:Q9UQ90 GermOnline:ENSG00000197912
Uniprot:Q9UQ90
Length = 795
Score = 163 (62.4 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LFK A+ R PC+V+IDEID+VG KR+ + + ++N QT+NQLL EMDG
Sbjct: 387 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT-MSGFSNTEEEQTLNQLLVEMDGMGT 445
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 446 TDHVIVL 452
Score = 94 (38.1 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++FKDV G+ EAK E++E V++LK+PE+F
Sbjct: 306 VSFKDVAGMHEAKLEVREFVDYLKSPERF 334
>MGI|MGI:2385906 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=TAS] [GO:0008089
"anterograde axon cargo transport" evidence=IMP] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030155 "regulation of cell adhesion"
evidence=TAS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 MGI:MGI:2385906 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0030155 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0007155 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 MEROPS:M41.006
CTD:6687 KO:K09552 ChiTaRS:SPG7 EMBL:AF512565 EMBL:AF547215
EMBL:AK145540 EMBL:BC024466 EMBL:BC024986 EMBL:BC051051
EMBL:BC096690 IPI:IPI00170128 RefSeq:NP_694816.3 UniGene:Mm.292075
ProteinModelPortal:Q3ULF4 SMR:Q3ULF4 STRING:Q3ULF4
PhosphoSite:Q3ULF4 PaxDb:Q3ULF4 PRIDE:Q3ULF4
Ensembl:ENSMUST00000108868 GeneID:234847 KEGG:mmu:234847
UCSC:uc009nud.1 InParanoid:Q3ULF4 NextBio:382391 Bgee:Q3ULF4
CleanEx:MM_SPG7 Genevestigator:Q3ULF4 Uniprot:Q3ULF4
Length = 781
Score = 166 (63.5 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LFK A+ R PC+V+IDEID+VG KR+ S + ++N QT+NQLL EMDG
Sbjct: 387 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTS-MSGFSNTEEEQTLNQLLVEMDGMGT 445
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 446 TDHVIVL 452
Score = 90 (36.7 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++F+DV G+ EAK E++E V++LK+PE+F
Sbjct: 306 VSFQDVAGMHEAKLEVREFVDYLKSPERF 334
>ZFIN|ZDB-GENE-070912-46 [details] [associations]
symbol:afg3l2 "AFG3 ATPase family gene 3-like 2 (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-070912-46 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:10939 MEROPS:M41.007 EMBL:BX000484 EMBL:BC155655
IPI:IPI00513225 RefSeq:NP_001104667.1 UniGene:Dr.82691 SMR:A9JRG9
STRING:A9JRG9 Ensembl:ENSDART00000089834 GeneID:569168
KEGG:dre:569168 NextBio:20889547 Uniprot:A9JRG9
Length = 800
Score = 155 (59.6 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 34/63 (53%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRDLF A+ PC++FIDEID+VG KR + Q T+NQLL EMDGF+ V
Sbjct: 383 RVRDLFVLARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTATNV 442
Query: 111 VVL 113
VVL
Sbjct: 443 VVL 445
Score = 101 (40.6 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+EI++ FKDV G +EAK E+ E V FLKNP+++
Sbjct: 296 DEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQY 328
>RGD|727940 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA;ISO] [GO:0008089
"anterograde axon cargo transport" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0031966
"mitochondrial membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382 RGD:727940
GO:GO:0016021 GO:GO:0005524 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49 MEROPS:M41.006
CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108 RefSeq:NP_852053.1
UniGene:Rn.16437 ProteinModelPortal:Q7TT47 SMR:Q7TT47 STRING:Q7TT47
PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754 GeneID:353231
KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619 ArrayExpress:Q7TT47
Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 164 (62.8 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LFK A+ R PC+V+IDEID+VG KR+ S + ++N QT+NQLL EMDG
Sbjct: 387 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTS-MSGFSNTEEEQTLNQLLVEMDGMGT 445
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 446 ADHVIVL 452
Score = 90 (36.7 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++F+DV G+ EAK E++E V++LK+PE+F
Sbjct: 306 VSFQDVAGMHEAKLEVREFVDYLKSPERF 334
>UNIPROTKB|Q7TT47 [details] [associations]
symbol:Spg7 "Paraplegin" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 RGD:727940 GO:GO:0016021 GO:GO:0005524
GO:GO:0031966 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 eggNOG:COG0465 GeneTree:ENSGT00530000063070
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49
MEROPS:M41.006 CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108
RefSeq:NP_852053.1 UniGene:Rn.16437 ProteinModelPortal:Q7TT47
SMR:Q7TT47 STRING:Q7TT47 PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754
GeneID:353231 KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619
ArrayExpress:Q7TT47 Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 164 (62.8 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN----QTINQLLAEMDGFHQ 106
A RVR LFK A+ R PC+V+IDEID+VG KR+ S + ++N QT+NQLL EMDG
Sbjct: 387 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTS-MSGFSNTEEEQTLNQLLVEMDGMGT 445
Query: 107 NEGVVVL 113
+ V+VL
Sbjct: 446 ADHVIVL 452
Score = 90 (36.7 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++F+DV G+ EAK E++E V++LK+PE+F
Sbjct: 306 VSFQDVAGMHEAKLEVREFVDYLKSPERF 334
>DICTYBASE|DDB_G0293388 [details] [associations]
symbol:DDB_G0293388 "ATP-dependent metalloprotease"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0293388 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:AAFI02000204
RefSeq:XP_629167.2 ProteinModelPortal:Q54BW7 STRING:Q54BW7
MEROPS:M41.A16 EnsemblProtists:DDB0304811 GeneID:8629188
KEGG:ddi:DDB_G0293388 InParanoid:Q54BW7 OMA:ICLAGRA Uniprot:Q54BW7
Length = 767
Score = 167 (63.8 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
+RRVR+LF AA+++ PC++FIDEID+VG R N+ H N+T+ QLL EMDGF N +
Sbjct: 378 SRRVRELFNAAREKQPCIIFIDEIDAVGKSR-NTAHH---NETLLQLLTEMDGFEGNSQI 433
Query: 111 VVL 113
+++
Sbjct: 434 MII 436
Score = 86 (35.3 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 9 TFKDVRGVDEAKQELKEIVEFLKNPEKFST 38
+F DV+G+ E K+EL+EIV++L +P K+++
Sbjct: 298 SFDDVKGIQEVKEELEEIVDYLLHPTKYNS 327
>TIGR_CMR|GSU_1180 [details] [associations]
symbol:GSU_1180 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952233.1 ProteinModelPortal:Q74DY5 SMR:Q74DY5
GeneID:2686793 KEGG:gsu:GSU1180 PATRIC:22025134 OMA:VCQWGMS
ProtClustDB:CLSK828230 BioCyc:GSUL243231:GH27-1166-MONOMER
Uniprot:Q74DY5
Length = 617
Score = 153 (58.9 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A RVRDLF AK P ++FIDE+D+VG R + H QT+NQLL+EMDGF ++
Sbjct: 253 AGRVRDLFATAKKSAPSIIFIDELDAVGRSRGAGLGGGHDEREQTLNQLLSEMDGFDSHD 312
Query: 109 GVVVL 113
V+V+
Sbjct: 313 EVIVM 317
Score = 97 (39.2 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 16/32 (50%), Positives = 26/32 (81%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++ +TF DV G++ K ELKEIV++L++P+KF
Sbjct: 169 KVKVTFDDVAGMENPKMELKEIVDYLRDPKKF 200
>ASPGD|ASPL0000072959 [details] [associations]
symbol:AN4557 species:162425 "Emericella nidulans"
[GO:0097002 "mitochondrial inner boundary membrane" evidence=IEA]
[GO:0005745 "m-AAA complex" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0006461 "protein
complex assembly" evidence=IEA] [GO:0006465 "signal peptide
processing" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:LYRFVTT MEROPS:M41.002 OrthoDB:EOG4J14HG
EMBL:BN001303 EMBL:AACD01000078 RefSeq:XP_662161.1
ProteinModelPortal:Q5B4H3 SMR:Q5B4H3 STRING:Q5B4H3
EnsemblFungi:CADANIAT00005881 GeneID:2872358 KEGG:ani:AN4557.2
Uniprot:Q5B4H3
Length = 883
Score = 154 (59.3 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRT--N-SVLHPYANQTINQLLAEMDGFHQNEG 109
RVRDLF A+ TPC++FIDEID++G R+ N S + T+NQ+L EMDGF+ ++
Sbjct: 482 RVRDLFANARKNTPCIIFIDEIDAIGKSRSAKNFSGGNDERESTLNQILTEMDGFNTSDQ 541
Query: 110 VVVL 113
VVVL
Sbjct: 542 VVVL 545
Score = 99 (39.9 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++ I F DV G+DEAK E+ E V FLK+PE+F
Sbjct: 396 DVKIKFSDVAGMDEAKVEIMEFVSFLKSPERF 427
>SGD|S000000819 [details] [associations]
symbol:AFG3 "Component, with Yta12p, of the mitochondrial
inner membrane m-AAA pro" species:4932 "Saccharomyces cerevisiae"
[GO:0016887 "ATPase activity" evidence=ISS;IMP;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0031966 "mitochondrial
membrane" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA;IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA;IMP]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IDA] [GO:0001302 "replicative cell
aging" evidence=IMP] [GO:0002181 "cytoplasmic translation"
evidence=IMP] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006461 "protein complex assembly"
evidence=IMP] [GO:0006465 "signal peptide processing" evidence=IMP]
[GO:0005745 "m-AAA complex" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 SGD:S000000819
GO:GO:0005524 GO:GO:0006461 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0001302 GO:GO:0004222
GO:GO:0016887 EMBL:BK006939 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
TIGRFAMs:TIGR01241 OMA:LYRFVTT EMBL:X81066 EMBL:X76643 EMBL:U18778
PIR:S46611 RefSeq:NP_010933.1 ProteinModelPortal:P39925 SMR:P39925
DIP:DIP-802N IntAct:P39925 MINT:MINT-563722 STRING:P39925
MEROPS:M41.002 PaxDb:P39925 PeptideAtlas:P39925
EnsemblFungi:YER017C GeneID:856737 KEGG:sce:YER017C CYGD:YER017c
OrthoDB:EOG4J14HG NextBio:982861 Genevestigator:P39925
GermOnline:YER017C GO:GO:0005745 GO:GO:0097002 GO:GO:0002181
GO:GO:0045041 GO:GO:0006465 Uniprot:P39925
Length = 761
Score = 143 (55.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 33/67 (49%), Positives = 42/67 (62%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ----TINQLLAEMDGFHQ 106
A RVRDLF A+ P ++FIDEID++G +R AN T+NQLL EMDGF
Sbjct: 366 ASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTT 425
Query: 107 NEGVVVL 113
++ VVVL
Sbjct: 426 SDQVVVL 432
Score = 106 (42.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+I I+FK+V G DEAKQE+ E V FLKNP K++
Sbjct: 282 DIKISFKNVAGCDEAKQEIMEFVHFLKNPGKYT 314
>WB|WBGene00021425 [details] [associations]
symbol:ppgn-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
KO:K09552 EMBL:FO080872 EMBL:AB257343 RefSeq:NP_500191.3
UniGene:Cel.12073 ProteinModelPortal:G5EDB6 SMR:G5EDB6
MEROPS:M41.A12 EnsemblMetazoa:Y38F2AR.7.1
EnsemblMetazoa:Y38F2AR.7.2 GeneID:177021 KEGG:cel:CELE_Y38F2AR.7
CTD:177021 WormBase:Y38F2AR.7 OMA:DKISWSE NextBio:895012
Uniprot:G5EDB6
Length = 747
Score = 150 (57.9 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 33/71 (46%), Positives = 42/71 (59%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--------HPYANQTINQLLAEMD 102
A R+R LFK A+ R PC+++IDEID++G KR+ QT+NQLL EMD
Sbjct: 363 ASRIRGLFKEARSRAPCIIYIDEIDAIGRKRSEGAGAGGGFGGGSGEEEQTLNQLLVEMD 422
Query: 103 GFHQNEGVVVL 113
G GVVVL
Sbjct: 423 GMGSGNGVVVL 433
Score = 97 (39.2 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
+++ I FKDV G EAK E++E V++LKNP +F+
Sbjct: 278 KQLKIKFKDVAGCSEAKVEIREFVDYLKNPGRFT 311
>MGI|MGI:1928277 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=ISA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IGI] [GO:0008053 "mitochondrial fusion" evidence=IGI]
[GO:0008152 "metabolic process" evidence=ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IGI] [GO:0042407 "cristae formation" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1928277
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0031966
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 EMBL:AK012394 EMBL:AK159647 EMBL:AK167964
EMBL:AK168244 EMBL:BC056978 EMBL:AF329695 IPI:IPI00468514
IPI:IPI00652659 RefSeq:NP_473411.2 UniGene:Mm.287475
ProteinModelPortal:Q920A7 SMR:Q920A7 IntAct:Q920A7 STRING:Q920A7
MEROPS:M41.016 PhosphoSite:Q920A7 PaxDb:Q920A7 PRIDE:Q920A7
Ensembl:ENSMUST00000001520 Ensembl:ENSMUST00000098320 GeneID:114896
KEGG:mmu:114896 UCSC:uc009nwd.2 CTD:114896 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 InParanoid:Q920A7 KO:K08956 OMA:WDEKDFR
OrthoDB:EOG4SBDXC NextBio:368917 Bgee:Q920A7 CleanEx:MM_AFG3L1
Genevestigator:Q920A7 GermOnline:ENSMUSG00000031967 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
Uniprot:Q920A7
Length = 789
Score = 159 (61.0 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRD+F A+ PC++FIDEID++G KR L + Q T+NQ+L EMDGF+ + V
Sbjct: 380 RVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNV 439
Query: 111 VVL 113
VVL
Sbjct: 440 VVL 442
Score = 88 (36.0 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
I++ F DV G +EAK E+ E V FLKNP+++
Sbjct: 295 IDVRFADVAGCEEAKLEIMEFVNFLKNPKQY 325
>RGD|1309722 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=ISO] [GO:0008053 "mitochondrial fusion"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=ISO] [GO:0042407
"cristae formation" evidence=ISO] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1309722
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
IPI:IPI00365343 Ensembl:ENSRNOT00000065957 UCSC:RGD:1309722
ArrayExpress:F1LS61 Uniprot:F1LS61
Length = 761
Score = 158 (60.7 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRD+F A+ PC++FIDEID++G KR L + Q T+NQ+L EMDGF+ V
Sbjct: 352 RVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSTTNV 411
Query: 111 VVL 113
VVL
Sbjct: 412 VVL 414
Score = 88 (36.0 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
I++ F DV G +EAK E+ E V FLKNP+++
Sbjct: 267 IDVRFADVAGCEEAKLEIMEFVNFLKNPKQY 297
>UNIPROTKB|E1BFQ0 [details] [associations]
symbol:E1BFQ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042407 "cristae formation" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 OMA:WDEKDFR GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:DAAA02046282 IPI:IPI00707325 Ensembl:ENSBTAT00000056979
Uniprot:E1BFQ0
Length = 802
Score = 155 (59.6 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQ--TINQLLAEMDGFHQNEGV 110
RVRD+F A+ PC++F+DEID++G KR + Q T+NQLL EMDGF+ V
Sbjct: 383 RVRDMFALARKNAPCILFVDEIDAIGRKRGRGHFGGQSEQENTLNQLLVEMDGFNSTTNV 442
Query: 111 VVL 113
VVL
Sbjct: 443 VVL 445
Score = 91 (37.1 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++I + F DV G +EAK E+ E V FLKNP+++
Sbjct: 296 DDIGVRFADVAGCEEAKLEIMEFVNFLKNPKQY 328
>SGD|S000004695 [details] [associations]
symbol:YTA12 "Component of the mitochondrial inner membrane
m-AAA protease" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS;IDA;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0006508 "proteolysis" evidence=IEA;IMP]
[GO:0016020 "membrane" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;IDA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA;IMP] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006461 "protein complex assembly" evidence=IMP]
[GO:0006465 "signal peptide processing" evidence=IMP] [GO:0005745
"m-AAA complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0031966 "mitochondrial membrane" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 SGD:S000004695 EMBL:U09358 GO:GO:0005524
GO:GO:0006461 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0008237 GO:GO:0004222 GO:GO:0016887 EMBL:BK006946
GO:GO:0030163 EMBL:Z49259 eggNOG:COG0465
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0097002 GO:GO:0045041
GO:GO:0006465 EMBL:X81068 EMBL:AY693099 PIR:S54465
RefSeq:NP_013807.1 ProteinModelPortal:P40341 SMR:P40341
DIP:DIP-889N IntAct:P40341 MINT:MINT-596896 STRING:P40341
MEROPS:M41.003 PaxDb:P40341 PeptideAtlas:P40341
EnsemblFungi:YMR089C GeneID:855114 KEGG:sce:YMR089C CYGD:YMR089c
OMA:NFSGAND NextBio:978455 Genevestigator:P40341 GermOnline:YMR089C
Uniprot:P40341
Length = 825
Score = 149 (57.5 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN---SVLHPYANQTINQLLAEMDGFHQN 107
A RVRDLFK A++ P +VFIDEID++G R S + T+NQ+L EMDGF
Sbjct: 426 AARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPA 485
Query: 108 EGVVVL 113
+ VVVL
Sbjct: 486 DHVVVL 491
Score = 97 (39.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++ I FKDV G DEAK+E+ E V FLK P ++
Sbjct: 342 DVKIKFKDVAGCDEAKEEIMEFVSFLKEPSRY 373
>POMBASE|SPBC543.09 [details] [associations]
symbol:yta12 "mitochondrial m-AAA protease Yta12
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005745 "m-AAA complex" evidence=ISO] [GO:0006091 "generation
of precursor metabolites and energy" evidence=NAS] [GO:0006465
"signal peptide processing" evidence=ISO] [GO:0006508 "proteolysis"
evidence=ISO] [GO:0008237 "metallopeptidase activity" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=ISO] [GO:0045041 "protein import into
mitochondrial intermembrane space" evidence=ISO] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC543.09
GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0004222 GO:GO:0006091
GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
KO:K08956 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 OMA:LYRFVTT
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0045041 GO:GO:0006465
GO:GO:0033108 RefSeq:NP_596797.1 ProteinModelPortal:Q9HGM3
SMR:Q9HGM3 STRING:Q9HGM3 MEROPS:M41.A14 EnsemblFungi:SPBC543.09.1
GeneID:2541079 KEGG:spo:SPBC543.09 NextBio:20802192 Uniprot:Q9HGM3
Length = 773
Score = 144 (55.7 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQNEG 109
RVRDLF A+ PC++FIDEID++G R + T+NQLL EMDGF +E
Sbjct: 376 RVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEH 435
Query: 110 VVV 112
+VV
Sbjct: 436 IVV 438
Score = 101 (40.6 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+I I F DV GVDEAK+E+ E V+FLKNP KF
Sbjct: 290 DIKIKFADVAGVDEAKEEIMEFVKFLKNP-KF 320
>WB|WBGene00004978 [details] [associations]
symbol:spg-7 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0008270 GO:GO:0006508
GO:GO:0000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0030968
EMBL:FO081580 HSSP:Q9LCZ4 RefSeq:NP_491165.2
ProteinModelPortal:Q9N3T5 SMR:Q9N3T5 STRING:Q9N3T5 MEROPS:M41.A10
PaxDb:Q9N3T5 EnsemblMetazoa:Y47G6A.10 GeneID:171915
KEGG:cel:CELE_Y47G6A.10 UCSC:Y47G6A.10 CTD:171915
WormBase:Y47G6A.10 InParanoid:Q9N3T5 NextBio:873225 Uniprot:Q9N3T5
Length = 782
Score = 149 (57.5 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQNEG 109
RVRD+F A+ +PC++FIDEID+VG KR H T+NQLL EMDGF +E
Sbjct: 373 RVRDMFSMARKNSPCILFIDEIDAVGRKRGGKGGMGGHSEQENTLNQLLVEMDGFTTDES 432
Query: 110 VVVL 113
V++
Sbjct: 433 SVIV 436
Score = 96 (38.9 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
++ E+I + F DV G +EAK E+ E V FLKNP+++
Sbjct: 283 INREDIKVKFADVAGCEEAKIEIMEFVNFLKNPQQY 318
>TAIR|locus:2066128 [details] [associations]
symbol:ftsh3 "FTSH protease 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 EMBL:AC005315 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 KO:K08956 OMA:WDEKDFR TIGRFAMs:TIGR01241
HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176 EMBL:BT002743 EMBL:AY063914
EMBL:AK226271 IPI:IPI00525466 PIR:T02738 RefSeq:NP_850129.1
UniGene:At.24335 ProteinModelPortal:Q84WU8 SMR:Q84WU8
MEROPS:M41.022 PaxDb:Q84WU8 PRIDE:Q84WU8 EnsemblPlants:AT2G29080.1
GeneID:817456 KEGG:ath:AT2G29080 GeneFarm:2506 TAIR:At2g29080
InParanoid:Q84WU8 PhylomeDB:Q84WU8 ProtClustDB:CLSN2692039
Genevestigator:Q84WU8 Uniprot:Q84WU8
Length = 809
Score = 141 (54.7 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNEGV 110
RVR LF+ A+ P ++FIDEID++G R L + T+NQLL EMDGF GV
Sbjct: 402 RVRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGV 461
Query: 111 VVL 113
VVL
Sbjct: 462 VVL 464
Score = 104 (41.7 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
I FKDV G DEAKQE+ E V FLKNP+K+
Sbjct: 319 IYFKDVAGCDEAKQEIMEFVHFLKNPKKY 347
Score = 35 (17.4 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 56 DLFKAAKDRTPCVVFIDEIDSVGA--KRTNSVL--HPYANQTINQLLAEMDGFHQNEGVV 111
D K ++T ++ + D V +RT ++ H I +LL E + HQ++ +
Sbjct: 696 DFSKPYSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVLHQDDLLK 755
Query: 112 VL 113
+L
Sbjct: 756 IL 757
>DICTYBASE|DDB_G0284249 [details] [associations]
symbol:DDB_G0284249 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006461 "protein complex assembly" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0044351 "macropinocytosis" evidence=RCA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0284249 GO:GO:0016021 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0006461 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:AAFI02000064 RefSeq:XP_638674.1 ProteinModelPortal:Q54PX1
SMR:Q54PX1 MEROPS:M41.A17 EnsemblProtists:DDB0229917 GeneID:8624503
KEGG:ddi:DDB_G0284249 InParanoid:Q54PX1 OMA:VSIYGMN
ProtClustDB:CLSZ2846729 Uniprot:Q54PX1
Length = 764
Score = 150 (57.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 34/64 (53%), Positives = 41/64 (64%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN---SVLHPYANQTINQLLAEMDGFHQNEG 109
RVRDLF+ A+ PC+VFIDEID+VG R S + T+NQLL EMDGF +
Sbjct: 382 RVRDLFEQARKNAPCIVFIDEIDAVGRARGKGGFSGSNDERENTLNQLLVEMDGFKPLKN 441
Query: 110 VVVL 113
VVVL
Sbjct: 442 VVVL 445
Score = 92 (37.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+ F DV G+ EAK E++E V FLKNP+KF
Sbjct: 299 VKFSDVAGLGEAKVEIEEFVNFLKNPKKF 327
Score = 37 (18.1 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 54 VRDLFKAAKDRTPCVV 69
VR L K+A DRT V+
Sbjct: 693 VRKLLKSAYDRTTQVL 708
>TAIR|locus:2076929 [details] [associations]
symbol:AT3G02450 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0009941 "chloroplast envelope" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR011546 Pfam:PF00004 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AC021640
EMBL:CP002686 GO:GO:0051301 GO:GO:0008270 GO:GO:0009941
GO:GO:0004222 GO:GO:0017111 HSSP:Q9LCZ4 EMBL:AY062811 EMBL:BT008384
IPI:IPI00524458 RefSeq:NP_186894.1 UniGene:At.27477
ProteinModelPortal:Q9M895 SMR:Q9M895 STRING:Q9M895 PRIDE:Q9M895
EnsemblPlants:AT3G02450.1 GeneID:821139 KEGG:ath:AT3G02450
InParanoid:Q9M895 OMA:SRRIYYN ProtClustDB:CLSN2685201
Genevestigator:Q9M895 Uniprot:Q9M895
Length = 622
Score = 165 (63.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGV 110
A R+RDLF AA+ +P ++FIDE+D+VG KR S + +QT+NQLL EMDGF + V
Sbjct: 412 AARIRDLFNAARKNSPSIIFIDELDAVGGKRGRS-FNDERDQTLNQLLTEMDGFESDTKV 470
Query: 111 VVL 113
+V+
Sbjct: 471 IVI 473
Score = 64 (27.6 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLK 31
+ F DV GVD AK EL EIV L+
Sbjct: 331 VGFDDVEGVDSAKDELVEIVSCLQ 354
>GENEDB_PFALCIPARUM|PFL1925w [details] [associations]
symbol:PFL1925w "cell division protein FtsH,
putative" species:5833 "Plasmodium falciparum" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 141 (54.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYA----NQTINQLLAEMDGFHQ 106
A+R+R LF A+ P +VFIDEID++G KR++ ++ +QT+NQLL EMDGF
Sbjct: 227 AKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQREHDQTLNQLLVEMDGFSN 286
Query: 107 NEGVVVL 113
++V+
Sbjct: 287 TVHIMVI 293
Score = 92 (37.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
V P I F+++ G+DE+K EL E+V+F+KN EK+
Sbjct: 139 VSPHFKPIRFEEIAGIDESKLELLEVVDFIKNREKY 174
>UNIPROTKB|Q8I526 [details] [associations]
symbol:PFL1925w "Cell division protein FtsH, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 141 (54.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYA----NQTINQLLAEMDGFHQ 106
A+R+R LF A+ P +VFIDEID++G KR++ ++ +QT+NQLL EMDGF
Sbjct: 227 AKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQREHDQTLNQLLVEMDGFSN 286
Query: 107 NEGVVVL 113
++V+
Sbjct: 287 TVHIMVI 293
Score = 92 (37.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
V P I F+++ G+DE+K EL E+V+F+KN EK+
Sbjct: 139 VSPHFKPIRFEEIAGIDESKLELLEVVDFIKNREKY 174
>TAIR|locus:2025052 [details] [associations]
symbol:ftsh10 "FTSH protease 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
EMBL:AC022464 ProtClustDB:CLSN2692039 EMBL:AY064138 EMBL:AY124808
EMBL:AK230173 IPI:IPI00520253 PIR:H86209 RefSeq:NP_172231.2
UniGene:At.23339 ProteinModelPortal:Q8VZI8 SMR:Q8VZI8 STRING:Q8VZI8
MEROPS:M41.023 PaxDb:Q8VZI8 PRIDE:Q8VZI8 EnsemblPlants:AT1G07510.1
GeneID:837265 KEGG:ath:AT1G07510 GeneFarm:2535 GeneFarm:2675
TAIR:At1g07510 InParanoid:Q8VZI8 OMA:YSEDTAM PhylomeDB:Q8VZI8
Genevestigator:Q8VZI8 Uniprot:Q8VZI8
Length = 813
Score = 135 (52.6 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQNEG 109
RVR+LF+ A+ P ++FIDEID++G R + T+NQLL EMDGF G
Sbjct: 407 RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAG 466
Query: 110 VVVL 113
VVVL
Sbjct: 467 VVVL 470
Score = 96 (38.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
I FKDV G +EAKQE+ E V FL+NP+K+
Sbjct: 324 IYFKDVAGCEEAKQEIMEFVHFLQNPKKY 352
Score = 46 (21.3 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGA--KRTNSVLHPYANQT--INQLLAEMDGFHQN 107
+R + K +RT ++ + + VG KRT ++ + Q I +LL E + HQ+
Sbjct: 696 QREDEFSKPYSNRTGAMIDEEVREWVGKAYKRTVELIEEHKEQVAQIAELLLEKEVLHQD 755
Query: 108 EGVVVL 113
+ VL
Sbjct: 756 DLTKVL 761
>UNIPROTKB|Q58576 [details] [associations]
symbol:pan "Proteasome-activating nucleotidase"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
"GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
"proteasome-activating nucleotidase complex" evidence=IDA]
[GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
TIGRFAMs:TIGR01242 Uniprot:Q58576
Length = 430
Score = 143 (55.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A V+D+FK AK++ P ++FIDEID++ AKRT+++ +T+ QLLAEMDGF
Sbjct: 249 ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 308
Query: 109 GVVVL 113
V ++
Sbjct: 309 DVKII 313
Score = 78 (32.5 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
VD E N+ ++D+ G+++ QE++E+VE LK+PE F
Sbjct: 161 VD-ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELF 196
>TAIR|locus:2138146 [details] [associations]
symbol:FtsHi1 "FTSH inactive protease 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0008237 "metallopeptidase
activity" evidence=ISS] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0007020 "microtubule nucleation"
evidence=RCA] [GO:0010020 "chloroplast fission" evidence=IMP]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
SMART:SM00382 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0051301 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
eggNOG:COG0465 GO:GO:0017111 GO:GO:0010020 EMBL:AC002343
EMBL:AL078468 EMBL:AL161560 HSSP:Q9LCZ4 IPI:IPI00537043 PIR:T08913
RefSeq:NP_567691.1 UniGene:At.3392 ProteinModelPortal:O22993
SMR:O22993 PaxDb:O22993 PRIDE:O22993 EnsemblPlants:AT4G23940.1
GeneID:828494 KEGG:ath:AT4G23940 TAIR:At4g23940
HOGENOM:HOG000029491 InParanoid:O22993 OMA:QMAGSEF PhylomeDB:O22993
ProtClustDB:CLSN2689578 ArrayExpress:O22993 Genevestigator:O22993
Uniprot:O22993
Length = 946
Score = 133 (51.9 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRT-----NS-VLHPYANQ----TINQLLAEMD 102
R+RDLFK AK P V+FIDEID++ +R NS L+ A Q T+NQLL E+D
Sbjct: 510 RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTLNQLLIELD 569
Query: 103 GFHQNEGVVVL 113
GF +GV+ L
Sbjct: 570 GFDTGKGVIFL 580
Score = 91 (37.1 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+ F DV G+DEA EL+E+V++LKNP+ F
Sbjct: 427 VKFADVAGIDEAVDELQELVKYLKNPDLF 455
>TAIR|locus:2101933 [details] [associations]
symbol:AtCDC48B "AT3G53230" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0045732 "positive
regulation of protein catabolic process" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005794 GO:GO:0046686 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0005730 GO:GO:0051301
GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0045732 GO:GO:0009524 EMBL:AL132958 HOGENOM:HOG000223224
KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AK228801 IPI:IPI00520856 PIR:T46169
RefSeq:NP_190891.1 UniGene:At.23168 ProteinModelPortal:Q9SCN8
SMR:Q9SCN8 STRING:Q9SCN8 PaxDb:Q9SCN8 PRIDE:Q9SCN8
EnsemblPlants:AT3G53230.1 GeneID:824489 KEGG:ath:AT3G53230
GeneFarm:1909 TAIR:At3g53230 InParanoid:Q9SCN8 OMA:DIRRYEE
PhylomeDB:Q9SCN8 Genevestigator:Q9SCN8 GermOnline:AT3G53230
Uniprot:Q9SCN8
Length = 815
Score = 131 (51.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ +R NSV A++ +NQLL EMDG + + V
Sbjct: 563 VREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVF 622
Query: 112 VL 113
++
Sbjct: 623 II 624
Score = 98 (39.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDEIDS+ KR + H + I +QLL MDG V+V
Sbjct: 290 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIV 347
Query: 113 L 113
+
Sbjct: 348 M 348
Score = 74 (31.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 12/31 (38%), Positives = 26/31 (83%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N++++D+ G++ K+EL+E V++ +++PEKF
Sbjct: 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKF 507
Score = 55 (24.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
D E ++ + + DV GV + +++E+VE L++P+ F +
Sbjct: 198 DEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKS 236
>UNIPROTKB|G4N517 [details] [associations]
symbol:MGG_05193 "Cell division control protein 48"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
Uniprot:G4N517
Length = 820
Score = 126 (49.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
+RD+F A+ PC+VF+DE+DS+ R SV +++ +NQLL EMDG + V
Sbjct: 578 IRDIFDKARAAAPCIVFLDELDSIAKARGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVF 637
Query: 112 VL 113
V+
Sbjct: 638 VI 639
Score = 105 (42.0 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ +P ++FIDEIDS+ KR TN + + ++QLL MDG VV
Sbjct: 304 LRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVE---RRVVSQLLTLMDGMKARSNVV 360
Query: 112 VL 113
V+
Sbjct: 361 VM 362
Score = 79 (32.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 14/31 (45%), Positives = 25/31 (80%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+ ++D+ G+DE KQ+L+E V++ + +PEKF
Sbjct: 492 NVRWEDIGGLDEVKQDLREQVQYPVDHPEKF 522
Score = 43 (20.2 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
DP + + DV G D K+E LK +K
Sbjct: 8 DPPKKKVNLADVSGAD-VKEESDVATAILKKKKK 40
>SGD|S000002284 [details] [associations]
symbol:CDC48 "AAA ATPase involved in multiple processes"
species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:1900182 "positive regulation of
protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
evidence=IMP] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
[GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
[GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IMP] [GO:0016236
"macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0072671 "mitochondria-associated protein
catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
Uniprot:P25694
Length = 835
Score = 116 (45.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
+RD+F A+ P VVF+DE+DS+ R S+ +++ +NQLL EMDG + + V
Sbjct: 569 IRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVF 628
Query: 112 VL 113
V+
Sbjct: 629 VI 630
Score = 104 (41.7 bits), Expect = 0.00015, P = 0.00015
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ P ++FIDEIDS+ KR TN + + ++QLL MDG VV
Sbjct: 296 LRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVE---RRVVSQLLTLMDGMKARSNVV 352
Query: 112 VL 113
V+
Sbjct: 353 VI 354
Score = 89 (36.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 16/35 (45%), Positives = 28/35 (80%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
E +N+T+ DV G+DE K+ELKE VE+ + +P++++
Sbjct: 480 ESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYT 514
>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
symbol:vcp "valosin containing protein"
species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
break" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:2000058 "regulation of protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
Length = 806
Score = 118 (46.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R +V A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 85 (35.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 14/31 (45%), Positives = 28/31 (90%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
NIT++D+ G+D+ K+EL+E+V++ +++P+KF
Sbjct: 473 NITWEDIGGLDDVKRELQELVQYPVEHPDKF 503
Score = 52 (23.4 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ GV + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALF 230
>TAIR|locus:2831844 [details] [associations]
symbol:AtCDC48C "cell division cycle 48C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
Uniprot:Q9LZF6
Length = 810
Score = 127 (49.8 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ +R NS A++ +NQLL EMDG + + V
Sbjct: 562 VREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVF 621
Query: 112 VL 113
++
Sbjct: 622 II 623
Score = 99 (39.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ P ++FIDEIDS+ KR TN + + ++QLL MDG V+
Sbjct: 289 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVE---RRIVSQLLTLMDGLKSRAHVI 345
Query: 112 VL 113
V+
Sbjct: 346 VM 347
Score = 74 (31.1 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 12/31 (38%), Positives = 26/31 (83%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N++++D+ G++ K+EL+E V++ +++PEKF
Sbjct: 476 NVSWEDIGGLENVKRELQETVQYPVEHPEKF 506
Score = 55 (24.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
D E ++ + + DV GV + +++E+VE L++P+ F +
Sbjct: 197 DEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKS 235
>GENEDB_PFALCIPARUM|PF07_0047 [details] [associations]
symbol:PF07_0047 "cell division cycle ATPase,
putative" species:5833 "Plasmodium falciparum" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0051726 "regulation of cell cycle"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0016887 GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 PANTHER:PTHR23077:SF18
SMART:SM01073 EMBL:AL844506 EMBL:M96757 RefSeq:XP_001349023.1
ProteinModelPortal:P46468 IntAct:P46468 MINT:MINT-1593477
PRIDE:P46468 EnsemblProtists:PF07_0047:mRNA GeneID:2655095
KEGG:pfa:PF07_0047 EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
Length = 1229
Score = 143 (55.4 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+++R +FK A ++TPC++FIDEIDS+ KR+ S + + ++QLL MDG +N V+
Sbjct: 607 QKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSN-NELEKRVVSQLLTLMDGLKKNNNVL 665
Query: 112 VL 113
VL
Sbjct: 666 VL 667
Score = 134 (52.2 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 22/60 (36%), Positives = 42/60 (70%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
VRDLF A+ +PC++F DEIDS+ +R ++ + +++ INQ+L E+DG ++ + + ++
Sbjct: 1016 VRDLFDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFII 1075
Score = 60 (26.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 2 DPEEIN--ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
D EE N IT++D+ G+ + +++E++E LK PE F
Sbjct: 516 DYEENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIF 553
Score = 54 (24.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 8 ITFKDVRGVDEAKQELKEIV 27
+T+ D+ G++E K++LKE +
Sbjct: 931 VTWNDIGGMNEVKEQLKETI 950
>UNIPROTKB|P46468 [details] [associations]
symbol:PF07_0047 "Putative cell division cycle ATPase"
species:36329 "Plasmodium falciparum 3D7" [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0051726 "regulation of cell cycle" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0016887
GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 PANTHER:PTHR23077:SF18 SMART:SM01073 EMBL:AL844506
EMBL:M96757 RefSeq:XP_001349023.1 ProteinModelPortal:P46468
IntAct:P46468 MINT:MINT-1593477 PRIDE:P46468
EnsemblProtists:PF07_0047:mRNA GeneID:2655095 KEGG:pfa:PF07_0047
EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
Length = 1229
Score = 143 (55.4 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+++R +FK A ++TPC++FIDEIDS+ KR+ S + + ++QLL MDG +N V+
Sbjct: 607 QKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSN-NELEKRVVSQLLTLMDGLKKNNNVL 665
Query: 112 VL 113
VL
Sbjct: 666 VL 667
Score = 134 (52.2 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 22/60 (36%), Positives = 42/60 (70%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
VRDLF A+ +PC++F DEIDS+ +R ++ + +++ INQ+L E+DG ++ + + ++
Sbjct: 1016 VRDLFDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFII 1075
Score = 60 (26.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 2 DPEEIN--ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
D EE N IT++D+ G+ + +++E++E LK PE F
Sbjct: 516 DYEENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIF 553
Score = 54 (24.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 8 ITFKDVRGVDEAKQELKEIV 27
+T+ D+ G++E K++LKE +
Sbjct: 931 VTWNDIGGMNEVKEQLKETI 950
>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory
subunit 7, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
Uniprot:Q8IEK3
Length = 420
Score = 120 (47.3 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNE 108
AR VR+LF+ AK + C++FIDE+D++G R + H +T+ +++ ++DGF
Sbjct: 241 ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG 300
Query: 109 GVVVL 113
+ VL
Sbjct: 301 NIKVL 305
Score = 71 (30.1 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
E+ +IT+ D+ G E ++L+E+VE L PE+F T
Sbjct: 155 EKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVT 190
>UNIPROTKB|Q8IEK3 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory subunit 7,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
Length = 420
Score = 120 (47.3 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNE 108
AR VR+LF+ AK + C++FIDE+D++G R + H +T+ +++ ++DGF
Sbjct: 241 ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG 300
Query: 109 GVVVL 113
+ VL
Sbjct: 301 NIKVL 305
Score = 71 (30.1 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
E+ +IT+ D+ G E ++L+E+VE L PE+F T
Sbjct: 155 EKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVT 190
>WB|WBGene00004504 [details] [associations]
symbol:rpt-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 119 (46.9 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC+VF+DEID++G +R + + +T+ +LL ++DGF
Sbjct: 229 ARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 284
Score = 71 (30.1 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
NI++ DV G+ E +EL+E+VE L NPE F
Sbjct: 146 NISYSDVGGLAEQIRELREVVELPLINPELF 176
>UNIPROTKB|O17071 [details] [associations]
symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 119 (46.9 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC+VF+DEID++G +R + + +T+ +LL ++DGF
Sbjct: 229 ARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 284
Score = 71 (30.1 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
NI++ DV G+ E +EL+E+VE L NPE F
Sbjct: 146 NISYSDVGGLAEQIRELREVVELPLINPELF 176
>ASPGD|ASPL0000069340 [details] [associations]
symbol:AN7254 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEP]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0051228
"mitotic spindle disassembly" evidence=IEA] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
"piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
Length = 823
Score = 128 (50.1 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
+RD+F A+ PCVVF+DE+DS+ R SV +++ +NQLL EMDG + V
Sbjct: 581 IRDIFDKARAAAPCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVF 640
Query: 112 VL 113
V+
Sbjct: 641 VI 642
Score = 105 (42.0 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ +P ++FIDEIDS+ KR TN + + ++QLL MDG VV
Sbjct: 307 LRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVE---RRVVSQLLTLMDGMKARSNVV 363
Query: 112 VL 113
V+
Sbjct: 364 VM 365
Score = 70 (29.7 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+ ++D+ G++E K+EL E V++ + +PEKF
Sbjct: 495 NVRWEDIGGLEEVKRELIESVQYPVDHPEKF 525
Score = 47 (21.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 2 DPEEINIT---FKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
+ EE N+ + D+ G + +++E+VE L++P+ F +
Sbjct: 213 EDEENNLNEVGYDDIGGCRKQMAQIRELVELPLRHPQLFKS 253
>SGD|S000005785 [details] [associations]
symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IMP] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0019904 "protein domain specific binding"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
Uniprot:P53549
Length = 437
Score = 118 (46.6 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F AK+ PC++F+DE+D++G +R + + +T+ +LL +MDGF
Sbjct: 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315
Score = 73 (30.8 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ITF + G+ E +EL+E++E LKNPE F
Sbjct: 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIF 207
>POMBASE|SPCC1682.16 [details] [associations]
symbol:rpt4 "19S proteasome regulatory subunit Rpt4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISM] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=NAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
NextBio:20800360 Uniprot:O74445
Length = 388
Score = 117 (46.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F AK+ PCV+F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 211 ARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 266
Score = 72 (30.4 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
DP +I+ F V G++E +EL+E++E LKNPE F
Sbjct: 125 DPGDIS--FAGVGGLNEQIRELREVIELPLKNPELF 158
>RGD|1308825 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
Uniprot:Q32PW9
Length = 381
Score = 120 (47.3 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 204 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 259
Score = 68 (29.0 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 121 NVSYSEIGGLSEQIRELREVIELPLTNPELF 151
>UNIPROTKB|F1MLV1 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
Length = 389
Score = 120 (47.3 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 212 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 267
Score = 68 (29.0 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 129 NVSYSEIGGLSEQIRELREVIELPLTNPELF 159
>UNIPROTKB|Q2KIW6 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
Length = 389
Score = 120 (47.3 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 212 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 267
Score = 68 (29.0 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 129 NVSYSEIGGLSEQIRELREVIELPLTNPELF 159
>UNIPROTKB|P62333 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
Uniprot:P62333
Length = 389
Score = 120 (47.3 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 212 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 267
Score = 68 (29.0 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 129 NVSYSEIGGLSEQIRELREVIELPLTNPELF 159
>UNIPROTKB|P62335 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:43179 "Spermophilus tridecemlineatus" [GO:0022624
"proteasome accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
Length = 389
Score = 120 (47.3 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 212 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 267
Score = 68 (29.0 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 129 NVSYSEIGGLSEQIRELREVIELPLTNPELF 159
>MGI|MGI:1914339 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
GermOnline:ENSMUSG00000021832 Uniprot:P62334
Length = 389
Score = 120 (47.3 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 212 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 267
Score = 68 (29.0 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 129 NVSYSEIGGLSEQIRELREVIELPLTNPELF 159
>UNIPROTKB|J9P1N0 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
Uniprot:J9P1N0
Length = 395
Score = 120 (47.3 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 218 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 273
Score = 68 (29.0 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 135 NVSYSEIGGLSEQIRELREVIELPLTNPELF 165
>UNIPROTKB|F1SFE6 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
ArrayExpress:F1SFE6 Uniprot:F1SFE6
Length = 403
Score = 120 (47.3 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 226 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 281
Score = 68 (29.0 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 143 NVSYSEIGGLSEQIRELREVIELPLTNPELF 173
>RGD|2318218 [details] [associations]
symbol:LOC100365869 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
Length = 403
Score = 120 (47.3 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 226 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 281
Score = 68 (29.0 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ ++ G+ E +EL+E++E L NPE F
Sbjct: 143 NVSYSEIGGLSEQIRELREVIELPLTNPELF 173
>WB|WBGene00008053 [details] [associations]
symbol:cdc-48.2 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 124 (48.7 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
VRD+F A+ PCV+F DE+DS+ R SV A++ INQ+L EMDG + + V
Sbjct: 564 VRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVF 623
Query: 112 VL 113
++
Sbjct: 624 II 625
Score = 89 (36.4 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F + +P ++FIDEID++ KR + H + I +QLL MDG VVV
Sbjct: 291 LRKAFAECEKNSPAILFIDEIDAIAPKREKA--HGEVEKRIVSQLLTLMDGLKTRAHVVV 348
Query: 113 L 113
+
Sbjct: 349 I 349
Score = 72 (30.4 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E N T+ D+ G+ K+EL+E+V++ +++PEK+
Sbjct: 475 ETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKY 508
Score = 52 (23.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ GV + ++KE+VE L++P+ F
Sbjct: 199 EEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLF 235
>UNIPROTKB|P54812 [details] [associations]
symbol:cdc-48.2 "Transitional endoplasmic reticulum ATPase
homolog 2" species:6239 "Caenorhabditis elegans" [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 124 (48.7 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
VRD+F A+ PCV+F DE+DS+ R SV A++ INQ+L EMDG + + V
Sbjct: 564 VRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVF 623
Query: 112 VL 113
++
Sbjct: 624 II 625
Score = 89 (36.4 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F + +P ++FIDEID++ KR + H + I +QLL MDG VVV
Sbjct: 291 LRKAFAECEKNSPAILFIDEIDAIAPKREKA--HGEVEKRIVSQLLTLMDGLKTRAHVVV 348
Query: 113 L 113
+
Sbjct: 349 I 349
Score = 72 (30.4 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E N T+ D+ G+ K+EL+E+V++ +++PEK+
Sbjct: 475 ETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKY 508
Score = 52 (23.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ GV + ++KE+VE L++P+ F
Sbjct: 199 EEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLF 235
>WB|WBGene00004502 [details] [associations]
symbol:rpt-2 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
NextBio:903424 Uniprot:O16368
Length = 443
Score = 124 (48.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEG 109
+ VR+LF+ A++ P +VFIDEID+VG KR +NS +T+ +LL ++DGF
Sbjct: 268 KMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 327
Query: 110 VVVL 113
V VL
Sbjct: 328 VKVL 331
Score = 65 (27.9 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ DV G+D+ QE+KE VE L +PE +
Sbjct: 183 PQE---TYADVGGLDQQIQEIKEAVELPLTHPEYY 214
Score = 33 (16.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE ++RG A L+EI++
Sbjct: 96 EEERAKVDELRGTPMAVGSLEEIID 120
>WB|WBGene00015688 [details] [associations]
symbol:C10G11.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 HSSP:Q9LCZ4 EMBL:FO080499 PIR:D87802
RefSeq:NP_491811.1 ProteinModelPortal:P91025 SMR:P91025
STRING:P91025 PaxDb:P91025 EnsemblMetazoa:C10G11.8 GeneID:172324
KEGG:cel:CELE_C10G11.8 UCSC:C10G11.8 CTD:172324 WormBase:C10G11.8
InParanoid:P91025 OMA:RGIENAN NextBio:875027 Uniprot:P91025
Length = 438
Score = 129 (50.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNE 108
AR VR +F+ AK++ P +VFIDEID+VG KR T+S +T+ +LL ++DGF
Sbjct: 262 ARLVRQIFQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRG 321
Query: 109 GVVVL 113
V ++
Sbjct: 322 DVKII 326
Score = 59 (25.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
TF D+ G + QELKE VE L +PE +
Sbjct: 181 TFDDIGGCESQIQELKESVELPLTHPEYY 209
>CGD|CAL0005827 [details] [associations]
symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
Length = 428
Score = 118 (46.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 36 FSTXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQT 93
FS AR +R++F AK+ PC++F+DE+D++G +R + + +T
Sbjct: 236 FSPASAIVDKYIGESARLIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRT 295
Query: 94 INQLLAEMDGF 104
+ +LL +MDGF
Sbjct: 296 LMELLNQMDGF 306
Score = 70 (29.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
+P EI+ F + G+ E +EL+E++E LKNPE F+
Sbjct: 165 EPGEIS--FNGIGGLTEQIRELREVIELPLKNPELFT 199
>ASPGD|ASPL0000032311 [details] [associations]
symbol:AN5747 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
Length = 393
Score = 114 (45.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F AK+ PC++F+DEID++G +R + + +T+ +LL ++DGF
Sbjct: 216 ARLIREMFGYAKEHEPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 271
Score = 73 (30.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
DP +IN F + G+++ +EL+E++E LKNPE F
Sbjct: 130 DPGQIN--FAGIGGLNDQIRELREVIELPLKNPELF 163
>UNIPROTKB|H9KYT1 [details] [associations]
symbol:LOC430766 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
PANTHER:PTHR23077:SF18 GeneTree:ENSGT00700000104534
EMBL:AADN02071262 Ensembl:ENSGALT00000000527 OMA:NRRTHAK
Uniprot:H9KYT1
Length = 538
Score = 116 (45.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 291 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 350
Query: 112 VL 113
++
Sbjct: 351 II 352
Score = 99 (39.9 bits), Expect = 0.00029, P = 0.00029
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 18 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 75
Query: 113 L 113
+
Sbjct: 76 M 76
Score = 74 (31.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 206 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 235
>FB|FBgn0261014 [details] [associations]
symbol:TER94 "TER94" species:7227 "Drosophila melanogaster"
[GO:0045169 "fusome" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0005783 "endoplasmic reticulum" evidence=NAS] [GO:0007030
"Golgi organization" evidence=IMP] [GO:0007317 "regulation of pole
plasm oskar mRNA localization" evidence=IMP] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=ISS] [GO:0000226
"microtubule cytoskeleton organization" evidence=IMP] [GO:0007029
"endoplasmic reticulum organization" evidence=IMP] [GO:0045451
"pole plasm oskar mRNA localization" evidence=IMP] [GO:0008103
"oocyte microtubule cytoskeleton polarization" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0042052
"rhabdomere development" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0030433 "ER-associated protein catabolic
process" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=IGI] [GO:0048813 "dendrite morphogenesis" evidence=IMP]
[GO:0043523 "regulation of neuron apoptotic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 EMBL:AE013599 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0000226
GO:GO:0030154 GO:GO:0005811 GO:GO:0006810 GO:GO:0006200
GO:GO:0048477 GO:GO:0030433 GO:GO:0000502 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 GO:GO:0007030
GO:GO:0007029 GO:GO:0016320 GO:GO:0045169 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
GeneTree:ENSGT00700000104534 GO:GO:0007317 EMBL:AF047037
EMBL:AF202034 EMBL:AF132553 RefSeq:NP_001097249.1
RefSeq:NP_001097250.1 RefSeq:NP_477369.1 UniGene:Dm.2968
ProteinModelPortal:Q7KN62 SMR:Q7KN62 IntAct:Q7KN62 STRING:Q7KN62
PaxDb:Q7KN62 PRIDE:Q7KN62 EnsemblMetazoa:FBtr0088391 GeneID:36040
KEGG:dme:Dmel_CG2331 UCSC:CG2331-RA CTD:36040 FlyBase:FBgn0261014
InParanoid:Q7KN62 OMA:RRGTDVN OrthoDB:EOG4TX96S GenomeRNAi:36040
NextBio:796507 Bgee:Q7KN62 Uniprot:Q7KN62
Length = 801
Score = 122 (48.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
VRD+F A+ PCV+F DE+DS+ R +V A++ INQ+L EMDG + V
Sbjct: 556 VRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVF 615
Query: 112 VL 113
++
Sbjct: 616 II 617
Score = 97 (39.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ +P ++FIDEID++ KR + H + I +QLL MDG ++ ++V
Sbjct: 283 LRKAFEEAEKNSPAIIFIDEIDAIAPKRDKT--HGEVERRIVSQLLTLMDGMKKSSHLIV 340
Query: 113 L 113
+
Sbjct: 341 M 341
Score = 72 (30.4 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 12/31 (38%), Positives = 25/31 (80%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N T+ D+ G++ K+EL+E+V++ +++P+KF
Sbjct: 470 NTTWTDIGGLESVKKELQELVQYPVEHPDKF 500
Score = 48 (22.0 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 191 EEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 227
>DICTYBASE|DDB_G0276917 [details] [associations]
symbol:psmC2 "26S proteasome ATPase 2 subunit"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
"proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
Length = 428
Score = 110 (43.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VRDLF+ A+ + C++F DE+D++G R + +T+ +L+ ++DGF
Sbjct: 249 ARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 308
Query: 109 GVVVL 113
+ VL
Sbjct: 309 NIKVL 313
Score = 77 (32.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ +IT+KDV G E ++L+E+VE L +PEKF
Sbjct: 163 EKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKF 196
>CGD|CAL0000732 [details] [associations]
symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 113 (44.8 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYA----NQTINQLLAEMDGFHQNEG 109
+RD+F A+ P VVF+DE+DS+ R S H A ++ +NQLL EMDG + +
Sbjct: 570 IRDIFDKARAAAPTVVFLDELDSIAKARGGS--HGDAGGASDRVVNQLLTEMDGMNAKKN 627
Query: 110 VVVL 113
V V+
Sbjct: 628 VFVI 631
Score = 104 (41.7 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ +P ++FIDEIDS+ KR TN + + ++QLL MDG VV
Sbjct: 297 LRKAFEEAEKNSPSIIFIDEIDSIAPKRDKTNGEVE---RRVVSQLLTLMDGMKARSNVV 353
Query: 112 VL 113
V+
Sbjct: 354 VI 355
Score = 80 (33.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E +N+T+ D+ G+D K ELKE VE+ + +P+++
Sbjct: 481 ENVNVTWDDIGGLDNIKNELKETVEYPVLHPDQY 514
Score = 46 (21.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
+ + D+ G + +++E+VE L++P+ F +
Sbjct: 212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKS 243
Score = 38 (18.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 1 VDPEEINITFKD 12
VDPEEI I +D
Sbjct: 179 VDPEEIAIVAQD 190
>UNIPROTKB|Q59WG3 [details] [associations]
symbol:CDC48 "Putative uncharacterized protein CDC48"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 113 (44.8 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYA----NQTINQLLAEMDGFHQNEG 109
+RD+F A+ P VVF+DE+DS+ R S H A ++ +NQLL EMDG + +
Sbjct: 570 IRDIFDKARAAAPTVVFLDELDSIAKARGGS--HGDAGGASDRVVNQLLTEMDGMNAKKN 627
Query: 110 VVVL 113
V V+
Sbjct: 628 VFVI 631
Score = 104 (41.7 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ +P ++FIDEIDS+ KR TN + + ++QLL MDG VV
Sbjct: 297 LRKAFEEAEKNSPSIIFIDEIDSIAPKRDKTNGEVE---RRVVSQLLTLMDGMKARSNVV 353
Query: 112 VL 113
V+
Sbjct: 354 VI 355
Score = 80 (33.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E +N+T+ D+ G+D K ELKE VE+ + +P+++
Sbjct: 481 ENVNVTWDDIGGLDNIKNELKETVEYPVLHPDQY 514
Score = 46 (21.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
+ + D+ G + +++E+VE L++P+ F +
Sbjct: 212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKS 243
Score = 38 (18.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 1 VDPEEINITFKD 12
VDPEEI I +D
Sbjct: 179 VDPEEIAIVAQD 190
>UNIPROTKB|Q5ZKX2 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
Uniprot:Q5ZKX2
Length = 389
Score = 120 (47.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 212 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 267
Score = 64 (27.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
DP +++ + ++ G+ E +EL+E++E L NPE F
Sbjct: 126 DPGDVS--YSEIGGLSEQIRELREVIELPLTNPELF 159
>SGD|S000002802 [details] [associations]
symbol:RPT3 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000002802 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006938 GO:GO:0006511 GO:GO:0017111 GO:GO:0045899 EMBL:U32274
KO:K07101 RefSeq:NP_010687.3 GeneID:852008 KEGG:sce:YDR399W
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 OrthoDB:EOG46HKKC
EMBL:X73570 EMBL:U06229 PIR:S69678 RefSeq:NP_010682.3 PDB:2DZN
PDB:2DZO PDBsum:2DZN PDBsum:2DZO ProteinModelPortal:P33298
SMR:P33298 DIP:DIP-1587N IntAct:P33298 MINT:MINT-383865
STRING:P33298 PaxDb:P33298 PeptideAtlas:P33298 EnsemblFungi:YDR394W
GeneID:852003 KEGG:sce:YDR394W EvolutionaryTrace:P33298
NextBio:970192 Genevestigator:P33298 GermOnline:YDR394W
Uniprot:P33298
Length = 428
Score = 121 (47.7 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ A++ P ++FIDE+DS+ KR ++ + + +LL +MDGF Q+
Sbjct: 252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311
Query: 110 VVVL 113
V V+
Sbjct: 312 VKVI 315
Score = 64 (27.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
E+ ++T+ DV G+D KQE++E VE
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVE 189
>TAIR|locus:2174819 [details] [associations]
symbol:EMB3144 "EMBRYO DEFECTIVE 3144" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
"proteolysis" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009790
"embryo development" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0016556
"mRNA modification" evidence=RCA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 EMBL:CP002688
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 GO:GO:0009790
GO:GO:0017111 IPI:IPI00527762 RefSeq:NP_201263.2 UniGene:At.28951
ProteinModelPortal:F4KF14 SMR:F4KF14 PRIDE:F4KF14
EnsemblPlants:AT5G64580.1 GeneID:836579 KEGG:ath:AT5G64580
OMA:LCWISAK Uniprot:F4KF14
Length = 855
Score = 113 (44.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH---PYANQTINQLLAEMDGF 104
A RV+DLF +++ P ++FIDEID++G+KR + Q + Q+L EMDGF
Sbjct: 394 ASRVKDLFASSRSYAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGF 450
Score = 80 (33.2 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
E+ +TF D G + K+EL+EIV LKN E+F
Sbjct: 309 EKTGVTFDDFAGQEYIKRELQEIVRILKNDEEF 341
>UNIPROTKB|F1NCS8 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
Uniprot:F1NCS8
Length = 403
Score = 120 (47.3 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 226 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 281
Score = 64 (27.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
DP +++ + ++ G+ E +EL+E++E L NPE F
Sbjct: 140 DPGDVS--YSEIGGLSEQIRELREVIELPLTNPELF 173
>ZFIN|ZDB-GENE-030131-304 [details] [associations]
symbol:psmc6 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
Uniprot:Q6DRD2
Length = 389
Score = 120 (47.3 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 212 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 267
Score = 63 (27.2 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
++++ ++ G+ E +EL+E++E L NPE F
Sbjct: 129 SVSYSEIGGLSEQIRELREVIELPLTNPELF 159
>ASPGD|ASPL0000036562 [details] [associations]
symbol:AN2904 species:162425 "Emericella nidulans"
[GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
OMA:EDAYSAQ Uniprot:C8VJ79
Length = 422
Score = 120 (47.3 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ A++ +P ++FIDEID++ KR ++ + + +LL +MDGF Q
Sbjct: 246 RMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQTSN 305
Query: 110 VVVL 113
V V+
Sbjct: 306 VKVI 309
Score = 64 (27.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
E+ ++T+ DV G+D KQE++E VE
Sbjct: 159 EKPDVTYADVGGLDMQKQEIREAVE 183
>UNIPROTKB|E2RM61 [details] [associations]
symbol:PSMC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000074947
EMBL:AAEX03006359 ProteinModelPortal:E2RM61 PRIDE:E2RM61
Ensembl:ENSCAFT00000020231 OMA:DSNCELQ NextBio:20855489
Uniprot:E2RM61
Length = 251
Score = 115 (45.5 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 179 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 238
Query: 109 GVVVL 113
+ V+
Sbjct: 239 NIKVM 243
Score = 60 (26.2 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 98 TYEMIGGLDKQIKEIKEVIELPVKHPELF 126
>UNIPROTKB|B4DR63 [details] [associations]
symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
Uniprot:B4DR63
Length = 367
Score = 120 (47.3 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 194 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 253
Query: 112 VL 113
V+
Sbjct: 254 VI 255
Score = 61 (26.5 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 107 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 138
Score = 32 (16.3 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 20 EEERSKVDDLRGTPMSVGTLEEIID 44
>UNIPROTKB|E1BTS8 [details] [associations]
symbol:LOC426240 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
GeneTree:ENSGT00700000104534 EMBL:AADN02060646 EMBL:AADN02060647
EMBL:AADN02060648 EMBL:AADN02060649 EMBL:AADN02060650
EMBL:AADN02060651 EMBL:AADN02060652 EMBL:AADN02060653
IPI:IPI00823321 Ensembl:ENSGALT00000039430 ArrayExpress:E1BTS8
Uniprot:E1BTS8
Length = 804
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 557 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 616
Query: 112 VL 113
++
Sbjct: 617 II 618
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 472 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 501
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>ZFIN|ZDB-GENE-060312-22 [details] [associations]
symbol:zgc:136908 "zgc:136908" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
Length = 805
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
VRD+F A+ PC++F DE+DS+ R A++ INQ+L EMDG + V
Sbjct: 561 VRDVFDKARQAAPCILFFDELDSIAKARGGGAGDAGGAADRVINQILTEMDGMTNKKNVF 620
Query: 112 VL 113
++
Sbjct: 621 II 622
Score = 100 (40.3 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q VVV
Sbjct: 288 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVVV 345
Query: 113 L 113
+
Sbjct: 346 M 346
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 12/31 (38%), Positives = 26/31 (83%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
++ ++D+ G+DE K+EL+E+V++ ++ P+KF
Sbjct: 475 HVNWEDIGGLDEVKRELQELVQYPVEYPDKF 505
Score = 48 (22.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N I + D+ G + ++KE+VE L++P F
Sbjct: 196 EEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPALF 232
>UNIPROTKB|Q6GL04 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
"chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
"translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
protein catabolic process" evidence=ISS] [GO:0032403 "protein
complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
InParanoid:Q6GL04 Uniprot:Q6GL04
Length = 805
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>UNIPROTKB|G3X757 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
Length = 806
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>UNIPROTKB|Q3ZBT1 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
Length = 806
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>UNIPROTKB|P55072 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISS] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISS]
[GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
protein catabolic process" evidence=IMP;TAS] [GO:0030968
"endoplasmic reticulum unfolded protein response" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
apoptotic process" evidence=TAS] [GO:0045184 "establishment of
protein localization" evidence=TAS] [GO:0019985 "translesion
synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IMP] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
Length = 806
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>MGI|MGI:99919 [details] [associations]
symbol:Vcp "valosin containing protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
"receptor binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
"cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISO] [GO:0031334 "positive regulation of protein complex
assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
evidence=ISO;IDA] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032436 "positive regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
"identical protein binding" evidence=ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
binding" evidence=ISO] [GO:0045732 "positive regulation of protein
catabolic process" evidence=ISO] [GO:0051260 "protein
homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
Length = 806
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>RGD|621595 [details] [associations]
symbol:Vcp "valosin-containing protein" species:10116 "Rattus
norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
[GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
[GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0018279 "protein N-linked glycosylation via asparagine"
evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
"protein complex binding" evidence=IPI] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
"positive regulation of protein catabolic process" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
"aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
Uniprot:P46462
Length = 806
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>UNIPROTKB|F1SIH8 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
Uniprot:F1SIH8
Length = 808
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>UNIPROTKB|F1P4V8 [details] [associations]
symbol:LOC426240 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:AADN02060646 EMBL:AADN02060647 EMBL:AADN02060648
EMBL:AADN02060649 EMBL:AADN02060650 EMBL:AADN02060651
EMBL:AADN02060652 EMBL:AADN02060653 IPI:IPI00585183
Ensembl:ENSGALT00000003093 ArrayExpress:F1P4V8 Uniprot:F1P4V8
Length = 810
Score = 116 (45.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 563 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 622
Query: 112 VL 113
++
Sbjct: 623 II 624
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRT--NSVLHPYANQTI-NQLLAEMDGFHQNEGV 110
+R F+ + P ++FIDE+D++ + + H + I +QLL MDG Q V
Sbjct: 286 LRKAFEETEKNAPAIIFIDELDAIASDDCFPSPQTHGEVERRIVSQLLTLMDGLKQRAHV 345
Query: 111 VVL 113
+V+
Sbjct: 346 IVM 348
Score = 74 (31.1 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 478 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 507
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>UNIPROTKB|E2RLQ9 [details] [associations]
symbol:VCP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
NextBio:20856352 Uniprot:E2RLQ9
Length = 822
Score = 116 (45.9 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 575 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 634
Query: 112 VL 113
++
Sbjct: 635 II 636
Score = 99 (39.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 302 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 359
Query: 113 L 113
+
Sbjct: 360 M 360
Score = 74 (31.1 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 490 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 519
Score = 47 (21.6 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 210 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 246
>CGD|CAL0001552 [details] [associations]
symbol:PR26 species:5476 "Candida albicans" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 117 (46.2 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ A++ +P ++FIDEID++ KR ++ + + +LL +MDGF Q
Sbjct: 235 RMVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTST 294
Query: 110 VVVL 113
V V+
Sbjct: 295 VKVI 298
Score = 65 (27.9 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVE 28
+ ++ ++T+ DV G+D KQE+KE VE
Sbjct: 146 EDQKPDVTYADVGGLDMQKQEIKEAVE 172
>UNIPROTKB|Q5A0L8 [details] [associations]
symbol:PR26 "Likely 26S proteasome regulatory particle
ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
"proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 117 (46.2 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ A++ +P ++FIDEID++ KR ++ + + +LL +MDGF Q
Sbjct: 235 RMVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTST 294
Query: 110 VVVL 113
V V+
Sbjct: 295 VKVI 298
Score = 65 (27.9 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVE 28
+ ++ ++T+ DV G+D KQE+KE VE
Sbjct: 146 EDQKPDVTYADVGGLDMQKQEIKEAVE 172
>FB|FBgn0015282 [details] [associations]
symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
[GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
Length = 439
Score = 121 (47.7 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID+VG KR +NS +T+ +LL ++DGF V
Sbjct: 266 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 325
Query: 112 VL 113
V+
Sbjct: 326 VI 327
Score = 60 (26.2 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 179 PQE---TYADIGGLDTQIQEIKESVELPLTHPEYY 210
Score = 33 (16.7 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 92 EEERSKVDDLRGTPMSVGNLEEIID 116
>UNIPROTKB|F1NTZ4 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
Uniprot:F1NTZ4
Length = 438
Score = 120 (47.3 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 265 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 324
Query: 112 VL 113
V+
Sbjct: 325 VI 326
Score = 61 (26.5 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 178 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 209
Score = 32 (16.3 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 91 EEERSKVDDLRGTPMSVGTLEEIID 115
>UNIPROTKB|F1NSP7 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
Uniprot:F1NSP7
Length = 439
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 266 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 325
Query: 112 VL 113
V+
Sbjct: 326 VI 327
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 179 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 210
Score = 32 (16.3 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 92 EEERSKVDDLRGTPMSVGTLEEIID 116
>UNIPROTKB|P23787 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=ISS] [GO:0016567
"protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
[GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0035101 "FACT
complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
Length = 805
Score = 114 (45.2 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 74 (31.1 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 11/30 (36%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>UNIPROTKB|A4FUZ3 [details] [associations]
symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
InParanoid:A4FUZ3 Uniprot:A4FUZ3
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>UNIPROTKB|F1PQ40 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
Uniprot:F1PQ40
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>UNIPROTKB|P62191 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000209 "protein polyubiquitination"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0002474 "antigen processing and presentation of peptide antigen
via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
presentation of exogenous peptide antigen via MHC class I,
TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>UNIPROTKB|F2Z5J1 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
KEGG:ssc:100155274 Uniprot:F2Z5J1
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>MGI|MGI:106054 [details] [associations]
symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
"TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
GermOnline:ENSMUSG00000021178 Uniprot:P62192
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>RGD|621097 [details] [associations]
symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
symbol:psmc1a "proteasome (prosome, macropain) 26S
subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDSQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>ZFIN|ZDB-GENE-040625-69 [details] [associations]
symbol:psmc1b "proteasome (prosome, macropain) 26S
subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
Length = 440
Score = 120 (47.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>TAIR|locus:2079742 [details] [associations]
symbol:RPT5A "regulatory particle triple-A ATPase 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
sac development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
Length = 424
Score = 140 (54.3 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 27/65 (41%), Positives = 45/65 (69%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNE 108
A+ VRD F+ AK++ PC++FIDEID++G KR +S + +T+ +LL ++DGF +E
Sbjct: 250 AKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDE 309
Query: 109 GVVVL 113
+ V+
Sbjct: 310 RIKVI 314
Score = 39 (18.8 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+++ QEL E IV + + E+F
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERF 197
>FB|FBgn0028685 [details] [associations]
symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:1901838 "positive regulation of transcription of nuclear large
rRNA transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
regulatory region sequence-specific DNA binding" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
Uniprot:Q8SZ19
Length = 397
Score = 120 (47.3 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 220 ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 275
Score = 59 (25.8 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
DP ++ T+ + G+ + +EL+E++E L NPE F
Sbjct: 134 DPGDV--TYSAIGGLTDQIRELREVIELPLLNPELF 167
>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
symbol:PFD0665c "26s proteasome aaa-ATPase
subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
Uniprot:Q8I1V1
Length = 392
Score = 113 (44.8 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ A++ +P ++FIDE+D++ KR ++ + + +LL +MDGF ++
Sbjct: 218 RMVRDVFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTN 277
Query: 110 VVVL 113
V V+
Sbjct: 278 VKVI 281
Score = 66 (28.3 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E N+ + D+ G+D KQE+KE VE L PE +
Sbjct: 131 ERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELY 164
>UNIPROTKB|Q8I1V1 [details] [associations]
symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
Length = 392
Score = 113 (44.8 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ A++ +P ++FIDE+D++ KR ++ + + +LL +MDGF ++
Sbjct: 218 RMVRDVFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTN 277
Query: 110 VVVL 113
V V+
Sbjct: 278 VKVI 281
Score = 66 (28.3 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E N+ + D+ G+D KQE+KE VE L PE +
Sbjct: 131 ERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELY 164
>UNIPROTKB|P03974 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
Uniprot:P03974
Length = 806
Score = 116 (45.9 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 99 (39.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 71 (30.1 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 10/30 (33%), Positives = 27/30 (90%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+++V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQDLVQYPVEHPDKF 503
Score = 47 (21.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N + + D+ G + ++KE+VE L++P F
Sbjct: 194 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALF 230
>WB|WBGene00004503 [details] [associations]
symbol:rpt-3 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
MINT:MINT-212949 STRING:P46502 PaxDb:P46502
EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
Uniprot:P46502
Length = 414
Score = 121 (47.7 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ +P ++FIDEID++ KR ++ + + +LL +MDGF Q+
Sbjct: 241 RMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTN 300
Query: 110 VVVL 113
V V+
Sbjct: 301 VKVI 304
Score = 58 (25.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
E+ +I++ D+ G+D KQE++E VE
Sbjct: 154 EKPDISYGDIGGLDMQKQEVREAVE 178
>FB|FBgn0028686 [details] [associations]
symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
Uniprot:Q9V405
Length = 413
Score = 120 (47.3 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF Q
Sbjct: 240 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 299
Query: 110 VVVL 113
V V+
Sbjct: 300 VKVI 303
Score = 59 (25.8 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
E+ ++++ D+ G+D KQE++E VE
Sbjct: 153 EKPDVSYADIGGMDMQKQEIREAVE 177
>ASPGD|ASPL0000064945 [details] [associations]
symbol:AN6988 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
Uniprot:Q5AXJ2
Length = 389
Score = 115 (45.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGFHQNE 108
+R VR+LF A++ P ++F+DEIDS+G+ R +S +T+ +LL ++DGF +
Sbjct: 211 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFEPTK 270
Query: 109 GVVVL 113
+ ++
Sbjct: 271 NIKII 275
Score = 63 (27.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T+ + G+D+ +E+KE++E LK+PE F +
Sbjct: 130 TYDMIGGLDQQIKEIKEVIELGLKHPELFES 160
>DICTYBASE|DDB_G0288065 [details] [associations]
symbol:cdcD "CDC48 family AAA ATPase" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
[GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0051301 "cell division" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
InParanoid:P90532 Uniprot:P90532
Length = 793
Score = 118 (46.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF A+ PCV+F DE+DS+ R +S ++ INQ+L EMDG + + V
Sbjct: 557 VRELFDKARQAAPCVLFFDELDSIARSRGSSQGDAGGAGDRVINQILTEMDGMNAKKNVF 616
Query: 112 VL 113
++
Sbjct: 617 II 618
Score = 97 (39.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
+R F+ A+ P ++FIDEIDS+ KR + + ++QLL MDG V+V+
Sbjct: 284 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQ-GEVERRIVSQLLTLMDGLKSRAHVIVM 342
Score = 68 (29.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 12/29 (41%), Positives = 24/29 (82%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++D+ G++ K+EL+E V++ +++PEKF
Sbjct: 473 TWEDIGGLEGVKRELRETVQYPVEHPEKF 501
Score = 48 (22.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
D + ++ + + D+ GV + +++E+VE L++P+ F
Sbjct: 192 DEDRLDEVGYDDIGGVRKQLGQIRELVELPLRHPQLF 228
>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
symbol:PFL2345c "tat-binding protein homolog"
species:5833 "Plasmodium falciparum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
Uniprot:Q8I4U5
Length = 435
Score = 117 (46.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGFHQNE 108
+R VR+LF A++ P ++F+DEIDS+G++R H +T+ +LL ++DGF +
Sbjct: 258 SRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGE-HGDSEVQRTMMELLNQLDGFESTQ 316
Query: 109 GVVVL 113
+ V+
Sbjct: 317 NIKVI 321
Score = 62 (26.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T++ V G+D+ +E+KE++E +K+PE F +
Sbjct: 177 TYEMVGGLDQQVKEVKEVIELPVKHPEIFES 207
>UNIPROTKB|Q8I4U5 [details] [associations]
symbol:PFL2345c "Tat-binding protein homolog" species:36329
"Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
Length = 435
Score = 117 (46.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH--PYANQTINQLLAEMDGFHQNE 108
+R VR+LF A++ P ++F+DEIDS+G++R H +T+ +LL ++DGF +
Sbjct: 258 SRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGE-HGDSEVQRTMMELLNQLDGFESTQ 316
Query: 109 GVVVL 113
+ V+
Sbjct: 317 NIKVI 321
Score = 62 (26.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T++ V G+D+ +E+KE++E +K+PE F +
Sbjct: 177 TYEMVGGLDQQVKEVKEVIELPVKHPEIFES 207
>FB|FBgn0039788 [details] [associations]
symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
NextBio:834976 Uniprot:Q9VA54
Length = 399
Score = 113 (44.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL-HPYANQTINQLLAEMDGFHQNEG 109
+R VR+LF A++ P ++F+DEIDS+G+ R + +T+ +LL ++DGF +
Sbjct: 222 SRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGTGDSEVQRTMLELLNQLDGFEATKN 281
Query: 110 VVVL 113
+ V+
Sbjct: 282 IKVI 285
Score = 65 (27.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ V G+D+ QE+KE++E +K+PE F
Sbjct: 141 TYEMVGGLDKQIQEIKEVIELPVKHPELF 169
>UNIPROTKB|Q90732 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
NextBio:20815872 Uniprot:Q90732
Length = 440
Score = 118 (46.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A++ P +VFIDEID++G KR +NS +T+ +LL ++DGF V
Sbjct: 267 VRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Query: 112 VL 113
V+
Sbjct: 327 VI 328
Score = 61 (26.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+ G+D QE+KE VE L +PE +
Sbjct: 180 PQE---TYADIGGLDNQIQEIKESVELPLTHPEYY 211
Score = 32 (16.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTPMSVGTLEEIID 117
>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
symbol:psmc4 "proteasome (prosome, macropain) 26S
subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
Uniprot:Q7SXX0
Length = 418
Score = 125 (49.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 304
Query: 110 VVVL 113
V V+
Sbjct: 305 VKVI 308
Score = 53 (23.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 161 DVLYSDIGGMDIQKQEVREAVE 182
Score = 32 (16.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 33 EPEDLEDLYSIYKKLQQELEFLEVQEEYIKDEQK 66
>SGD|S000005273 [details] [associations]
symbol:PEX6 "AAA-peroxin" species:4932 "Saccharomyces
cerevisiae" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS;IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005777 "peroxisome"
evidence=IEA;IMP;IDA] [GO:0007031 "peroxisome organization"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005778
"peroxisomal membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IMP;IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0016562
"protein import into peroxisome matrix, receptor recycling"
evidence=IGI;IDA;IMP] [GO:0001302 "replicative cell aging"
evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000005273 GO:GO:0005829 GO:GO:0005524 GO:GO:0005777
EMBL:X83226 EMBL:BK006947 GO:GO:0001302 GO:GO:0016887 GO:GO:0005778
GO:GO:0046982 eggNOG:COG0464 EMBL:Z46259 GO:GO:0016562 KO:K13339
GeneTree:ENSGT00550000074953 OrthoDB:EOG48PQTF EMBL:L20789
EMBL:Z71605 PIR:S43211 RefSeq:NP_014070.1 ProteinModelPortal:P33760
SMR:P33760 DIP:DIP-2621N IntAct:P33760 MINT:MINT-423224
STRING:P33760 PaxDb:P33760 PeptideAtlas:P33760 EnsemblFungi:YNL329C
GeneID:855387 KEGG:sce:YNL329C CYGD:YNL329c HOGENOM:HOG000248247
OMA:FTGADFY NextBio:979190 ArrayExpress:P33760
Genevestigator:P33760 GermOnline:YNL329C Uniprot:P33760
Length = 1030
Score = 119 (46.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQN-EGVV 111
VR +F+ A++ PCV+F DEIDSV KR N ++ ++QLLAE+DG + +GV
Sbjct: 813 VRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVF 872
Query: 112 VL 113
V+
Sbjct: 873 VI 874
Score = 69 (29.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
P+ N+T+ D+ G+D K E+ + ++ LK+PE F++
Sbjct: 724 PQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS 760
>POMBASE|SPCC576.10c [details] [associations]
symbol:rpt3 "19S proteasome regulatory subunit Rpt3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
Length = 389
Score = 119 (46.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ A++ P ++FIDEID++ KR ++ + + +LL +MDGF Q
Sbjct: 214 RMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGAN 273
Query: 110 VVVL 113
V V+
Sbjct: 274 VKVI 277
Score = 58 (25.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
E ++++ DV G+D KQE++E VE
Sbjct: 127 ERPDVSYADVGGLDVQKQEVREAVE 151
>WB|WBGene00004506 [details] [associations]
symbol:rpt-6 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
Uniprot:Q9XTT9
Length = 416
Score = 117 (46.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT--NSVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R +S +T+ +LL ++DGF +
Sbjct: 238 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATK 297
Query: 109 GVVVL 113
+ V+
Sbjct: 298 NIKVI 302
Score = 61 (26.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ V G+D+ +E+KE++E +K+PE F
Sbjct: 157 TYEMVGGLDKQIKEIKEVIELPVKHPELF 185
>POMBASE|SPAC1565.08 [details] [associations]
symbol:cdc48 "AAA family ATPase Cdc48" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
"endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IGI] [GO:0033554 "cellular response to
stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
complex" evidence=ISO] [GO:0051230 "spindle disassembly"
evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
localization involved in endoplasmic reticulum polarization at cell
division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
GO:GO:0051230 Uniprot:Q9P3A7
Length = 815
Score = 123 (48.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYA-NQTINQLLAEMDGFHQNEGVVV 112
VRD+F A+ PCVVF+DE+DS+ R S ++ +NQLL EMDG + + V V
Sbjct: 579 VRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFV 638
Query: 113 L 113
+
Sbjct: 639 I 639
Score = 105 (42.0 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ +P ++FIDEIDS+ KR TN + + ++QLL MDG VV
Sbjct: 306 LRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVE---RRVVSQLLTLMDGMKARSNVV 362
Query: 112 VL 113
V+
Sbjct: 363 VM 364
Score = 62 (26.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+ ++D+ G++E K+EL+E V+ + EKF
Sbjct: 493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKF 523
Score = 44 (20.5 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
+ + D+ G +++E+VE L++P+ F +
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKS 252
>FB|FBgn0037742 [details] [associations]
symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
Uniprot:Q9VH79
Length = 405
Score = 117 (46.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRDLF+ AK +P ++FIDEID++ KR ++ + + +LL +MDGF +
Sbjct: 232 RMVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTN 291
Query: 110 VVVL 113
+ V+
Sbjct: 292 IKVI 295
Score = 60 (26.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
E+ +I++ D+ G+D KQE++E VE
Sbjct: 145 EKPDISYSDIGGLDIQKQEIREAVE 169
>UNIPROTKB|F1MG70 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
Length = 417
Score = 125 (49.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 244 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 303
Query: 110 VVVL 113
V V+
Sbjct: 304 VKVI 307
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 160 DVMYADIGGMDIQKQEVREAVE 181
Score = 33 (16.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 32 EPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQK 65
>TAIR|locus:2085064 [details] [associations]
symbol:CDC48 "cell division cycle 48" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
tube growth" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
Uniprot:P54609
Length = 809
Score = 112 (44.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR---TNSVLHPYANQTINQLLAEMDGFHQNEGV 110
VR++F A+ PCV+F DE+DS+ +R + A++ +NQLL EMDG + + V
Sbjct: 562 VREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTV 621
Query: 111 VVL 113
++
Sbjct: 622 FII 624
Score = 99 (39.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ A+ P ++FIDEIDS+ KR TN + + ++QLL MDG V+
Sbjct: 289 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVE---RRIVSQLLTLMDGLKSRAHVI 345
Query: 112 VL 113
V+
Sbjct: 346 VM 347
Score = 73 (30.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 12/31 (38%), Positives = 25/31 (80%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ D+ G++ K+EL+E V++ +++PEKF
Sbjct: 476 NVSWNDIGGLENVKRELQETVQYPVEHPEKF 506
Score = 55 (24.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
D E ++ + + DV GV + +++E+VE L++P+ F +
Sbjct: 197 DEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKS 235
>UNIPROTKB|Q3T030 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
ArrayExpress:Q3T030 Uniprot:Q3T030
Length = 418
Score = 125 (49.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 304
Query: 110 VVVL 113
V V+
Sbjct: 305 VKVI 308
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 161 DVMYADIGGMDIQKQEVREAVE 182
Score = 33 (16.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 33 EPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQK 66
>UNIPROTKB|E2RH48 [details] [associations]
symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
Length = 418
Score = 125 (49.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 304
Query: 110 VVVL 113
V V+
Sbjct: 305 VKVI 308
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 161 DVMYADIGGMDIQKQEVREAVE 182
Score = 33 (16.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 33 EPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQK 66
>UNIPROTKB|P43686 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
"ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006521 "regulation of cellular amino acid metabolic process"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=TAS]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
Uniprot:P43686
Length = 418
Score = 125 (49.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 304
Query: 110 VVVL 113
V V+
Sbjct: 305 VKVI 308
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 161 DVMYADIGGMDIQKQEVREAVE 182
Score = 33 (16.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 33 EPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQK 66
>UNIPROTKB|Q4R7L3 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
Length = 418
Score = 125 (49.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 304
Query: 110 VVVL 113
V V+
Sbjct: 305 VKVI 308
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 161 DVMYADIGGMDIQKQEVREAVE 182
Score = 33 (16.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 33 EPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQK 66
>MGI|MGI:1346093 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
Uniprot:P54775
Length = 418
Score = 125 (49.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 304
Query: 110 VVVL 113
V V+
Sbjct: 305 VKVI 308
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 161 DVMYADIGGMDIQKQEVREAVE 182
Score = 33 (16.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 33 EPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQK 66
>RGD|621102 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
"blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
GermOnline:ENSRNOG00000018994 Uniprot:Q63570
Length = 418
Score = 125 (49.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDEID++ KR ++ + + +LL +MDGF QN
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN 304
Query: 110 VVVL 113
V V+
Sbjct: 305 VKVI 308
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 NITFKDVRGVDEAKQELKEIVE 28
++ + D+ G+D KQE++E VE
Sbjct: 161 DVMYADIGGMDIQKQEVREAVE 182
Score = 33 (16.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEK 35
+PE++ + + + + + L+ E++K+ +K
Sbjct: 33 EPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQK 66
>UNIPROTKB|J9NWB0 [details] [associations]
symbol:J9NWB0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074818 EMBL:AAEX03014432
Ensembl:ENSCAFT00000039483 OMA:AGSELIQ Uniprot:J9NWB0
Length = 436
Score = 111 (44.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+ F+ A++ P +VFIDEID++G +R +NS +T+ +LL ++DGF V
Sbjct: 265 VRESFRVAEEHAPSIVFIDEIDAIGTRRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 324
Query: 112 VL 113
V+
Sbjct: 325 VI 326
Score = 67 (28.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
P+E T+ D+RG+D QE+KE +E L +PE +
Sbjct: 183 PQE---TYADIRGLDNQIQEIKESLELPLTHPENY 214
Score = 33 (16.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+EI++
Sbjct: 93 EEERSKVDDLRGTSMSVVTLEEIID 117
>UNIPROTKB|F1MFP1 [details] [associations]
symbol:SPATA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 GO:GO:0005524 GO:GO:0005737
GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
EMBL:DAAA02044760 EMBL:DAAA02044756 EMBL:DAAA02044757
EMBL:DAAA02044758 EMBL:DAAA02044759 IPI:IPI00912761
Ensembl:ENSBTAT00000000136 Uniprot:F1MFP1
Length = 771
Score = 113 (44.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR-TNSVLHPYANQTINQLLAEMDGFHQNEGV 110
R VR++F+ A+ P ++F DE+D++ +R ++S A++ + QLL EMDG Q + V
Sbjct: 698 RAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNV 757
Query: 111 VVL 113
+L
Sbjct: 758 TIL 760
Score = 82 (33.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEGV 110
R+R +F A R P ++FIDE+D++ KR + + + + LL MDG +EG
Sbjct: 425 RLRQIFAEATLRHPSIIFIDELDALCPKREGAQ-NEVEKRVVASLLTLMDGIGSEGSEGQ 483
Query: 111 VVL 113
V++
Sbjct: 484 VLV 486
Score = 71 (30.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
N+++ D+ G++ K +LK+ VE+ LK+PE F+
Sbjct: 614 NVSWSDIGGLENVKLKLKQAVEWPLKHPESFT 645
Score = 61 (26.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
++ +T+ + G++ +E++EI+E LK PE F +
Sbjct: 338 QLKVTYDMIGGLNSQLKEIREIIELPLKQPELFKS 372
>FB|FBgn0036224 [details] [associations]
symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
NextBio:813228 Uniprot:Q9VTQ9
Length = 398
Score = 119 (46.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGF 104
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL +MDGF
Sbjct: 221 ARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 276
Score = 57 (25.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+ + ++ G+ + +EL+E++E L NP+ F
Sbjct: 138 NVNYAEIGGLGQQIRELREVIELPLLNPDIF 168
>SGD|S000001628 [details] [associations]
symbol:RPT1 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IMP] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IDA] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IPI] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000001628 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BK006944 GO:GO:0006511 GO:GO:0017111
GO:GO:0045899 GO:GO:0045732 PDB:3VLF PDB:4A3V PDBsum:3VLF
PDBsum:4A3V GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03061
OMA:DIRWELI GeneTree:ENSGT00550000074978 OrthoDB:EOG4B01XN
EMBL:Z22817 EMBL:X73571 EMBL:Z28145 PIR:S34354 RefSeq:NP_012777.1
ProteinModelPortal:P33299 SMR:P33299 DIP:DIP-2883N IntAct:P33299
MINT:MINT-612502 STRING:P33299 SWISS-2DPAGE:P33299 PaxDb:P33299
PeptideAtlas:P33299 PRIDE:P33299 EnsemblFungi:YKL145W GeneID:853712
KEGG:sce:YKL145W CYGD:YKL145w NextBio:974719 Genevestigator:P33299
GermOnline:YKL145W Uniprot:P33299
Length = 467
Score = 107 (42.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID+VG R + +T+ +L+ ++DGF
Sbjct: 288 ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347
Query: 109 GVVVL 113
+ V+
Sbjct: 348 NIKVM 352
Score = 71 (30.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
E+ ++T+ DV G + ++L+E+VE L +PE+F+T
Sbjct: 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFAT 237
>UNIPROTKB|P62194 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
Length = 406
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 228 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Query: 109 GVVVL 113
+ V+
Sbjct: 288 NIKVI 292
Score = 60 (26.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>UNIPROTKB|P62195 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
"nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043069 "negative regulation of programmed cell
death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
[GO:0003712 "transcription cofactor activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
Ensembl:ENST00000375812 Ensembl:ENST00000580864
Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
Length = 406
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 228 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Query: 109 GVVVL 113
+ V+
Sbjct: 288 NIKVI 292
Score = 60 (26.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>UNIPROTKB|P62197 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
Uniprot:P62197
Length = 406
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 228 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Query: 109 GVVVL 113
+ V+
Sbjct: 288 NIKVI 292
Score = 60 (26.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>UNIPROTKB|Q4RG45 [details] [associations]
symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
Length = 406
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 228 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Query: 109 GVVVL 113
+ V+
Sbjct: 288 NIKVI 292
Score = 60 (26.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>MGI|MGI:105047 [details] [associations]
symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO;ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
Length = 406
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 228 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Query: 109 GVVVL 113
+ V+
Sbjct: 288 NIKVI 292
Score = 60 (26.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>RGD|708376 [details] [associations]
symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008134 "transcription factor binding" evidence=ISO;ISS]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
ArrayExpress:P62198 Genevestigator:P62198
GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
Length = 406
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 228 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Query: 109 GVVVL 113
+ V+
Sbjct: 288 NIKVI 292
Score = 60 (26.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
symbol:psmc5 "proteasome (prosome, macropain) 26S
subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
Uniprot:Q6AZC1
Length = 406
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 228 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Query: 109 GVVVL 113
+ V+
Sbjct: 288 NIKVI 292
Score = 60 (26.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>FB|FBgn0020369 [details] [associations]
symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
"endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
"proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
"proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
Uniprot:O18413
Length = 405
Score = 114 (45.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
+R VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 227 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 286
Query: 109 GVVVL 113
+ V+
Sbjct: 287 NIKVI 291
Score = 61 (26.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ V G+D+ +E+KE++E +K+PE F
Sbjct: 146 TYEMVGGLDKQIKEIKEVIELPVKHPELF 174
>UNIPROTKB|F1NU79 [details] [associations]
symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
Ensembl:ENSGALT00000000469 Uniprot:F1NU79
Length = 412
Score = 115 (45.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 234 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 293
Query: 109 GVVVL 113
+ V+
Sbjct: 294 NIKVI 298
Score = 60 (26.2 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 153 TYEMIGGLDKQIKEIKEVIELPVKHPELF 181
>UNIPROTKB|Q6AZU7 [details] [associations]
symbol:Q6AZU7 "Putative uncharacterized protein"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
Length = 414
Score = 115 (45.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 236 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 295
Query: 109 GVVVL 113
+ V+
Sbjct: 296 NIKVI 300
Score = 60 (26.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 155 TYEMIGGLDKQIKEIKEVIELPVKHPELF 183
>UNIPROTKB|Q6P380 [details] [associations]
symbol:psmc5 "Putative uncharacterized protein MGC75584"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
Uniprot:Q6P380
Length = 414
Score = 115 (45.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 236 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 295
Query: 109 GVVVL 113
+ V+
Sbjct: 296 NIKVI 300
Score = 60 (26.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 155 TYEMIGGLDKQIKEIKEVIELPVKHPELF 183
>UNIPROTKB|F1RQN5 [details] [associations]
symbol:SPATA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 GO:GO:0005524 GO:GO:0005737
GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
EMBL:FP102941 EMBL:CU463172 Ensembl:ENSSSCT00000009950
Uniprot:F1RQN5
Length = 778
Score = 112 (44.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR-TNSVLHPYANQTINQLLAEMDGFHQNEGV 110
R VR++F+ A+ P ++F DE+D++ +R ++S A++ + QLL EMDG Q + V
Sbjct: 701 RAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKDV 760
Query: 111 VVL 113
+L
Sbjct: 761 TIL 763
Score = 82 (33.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEGV 110
R+R +F A R P ++FIDE+D++ KR + + + + LL MDG +EG
Sbjct: 428 RLRQIFAEATLRHPSIIFIDELDALCPKREGAQ-NEVEKRVVASLLTLMDGIGSEGSEGQ 486
Query: 111 VVL 113
V++
Sbjct: 487 VLV 489
Score = 70 (29.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
N+++ D+ G++ K +LK+ VE+ LK+PE F+
Sbjct: 617 NVSWSDIGGLENIKLKLKQAVEWPLKHPESFT 648
Score = 61 (26.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
++ +T+ + G++ +E++EI+E LK PE F +
Sbjct: 341 QLKVTYDMIGGLNSQLKEIREIIELPLKQPELFKS 375
>SGD|S000005643 [details] [associations]
symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
Uniprot:P33297
Length = 434
Score = 123 (48.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF ++
Sbjct: 260 AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319
Query: 109 GVVVL 113
V VL
Sbjct: 320 RVKVL 324
Score = 52 (23.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKE-IVEFLKNPEKF 36
VD E+ T+ DV G+D+ +EL E IV +K +KF
Sbjct: 172 VD-EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKF 207
>TAIR|locus:2028200 [details] [associations]
symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
"cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
Uniprot:Q9MAK9
Length = 399
Score = 117 (46.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQ 106
AR +R++F A++ PC++F+DEID++G +R + + +T+ +LL ++DGF Q
Sbjct: 218 ARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 275
Score = 57 (25.1 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
NI++ V G+ + +EL+E +E L NPE F
Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPELF 165
Score = 34 (17.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKN 32
+E N T D++ + Q + E++ L N
Sbjct: 44 KEFNKTEDDLKSLQSVGQIIGEVLRPLDN 72
>CGD|CAL0006022 [details] [associations]
symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051091 "positive regulation
of sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
Length = 401
Score = 114 (45.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT--NSVLHPYANQTINQLLAEMDGFHQNE 108
+R VR+LF A++ P ++F+DEIDS+G+ R +S +T+ +LL ++DGF ++
Sbjct: 223 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSK 282
Query: 109 GVVVL 113
+ ++
Sbjct: 283 DIKII 287
Score = 60 (26.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T+ V G+D+ +E+KE++E +K+PE F +
Sbjct: 142 TYDMVGGLDKQIKEIKEVIELPVKHPELFES 172
>DICTYBASE|DDB_G0292382 [details] [associations]
symbol:psmC5 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
ProtClustDB:CLSZ2429412 Uniprot:P34124
Length = 403
Score = 113 (44.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQN 107
+R VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF
Sbjct: 224 SRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFEST 283
Query: 108 EGVVVL 113
+ + VL
Sbjct: 284 KNIKVL 289
Score = 61 (26.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T+ V G+D+ +E+KE++E +K+PE F +
Sbjct: 143 TYDMVGGLDKQIKEIKEVIELPIKHPELFES 173
Score = 37 (18.1 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLK 31
++N +D+R ++ + EL V LK
Sbjct: 30 KVNEKAQDLRRLEAQRNELNNRVRMLK 56
>UNIPROTKB|B7Z5E2 [details] [associations]
symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
Uniprot:B7Z5E2
Length = 296
Score = 104 (41.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 117 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 176
Query: 109 GVVVL 113
+ VL
Sbjct: 177 NIKVL 181
Score = 66 (28.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++L+E+VE L +PE+F
Sbjct: 31 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPERF 64
>RGD|1310478 [details] [associations]
symbol:Spata5 "spermatogenesis associated 5" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
RGD:1310478 GO:GO:0005524 GO:GO:0005737 KO:K14575
GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 EMBL:CH473961 SMART:SM01073
CTD:166378 OrthoDB:EOG43FGWF EMBL:AC116183 IPI:IPI00373191
RefSeq:NP_001102019.1 UniGene:Rn.116828 Ensembl:ENSRNOT00000023584
GeneID:361935 KEGG:rno:361935 UCSC:RGD:1310478 NextBio:678104
Uniprot:D4A6T1
Length = 838
Score = 113 (44.8 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR-TNSVLHPYANQTINQLLAEMDGFHQNEGV 110
R VR++F+ A+ P ++F DE+D++ +R ++S A++ + QLL EMDG Q + V
Sbjct: 707 RAVREVFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNV 766
Query: 111 VVL 113
VL
Sbjct: 767 TVL 769
Score = 80 (33.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEG- 109
R+R +F A R P ++FIDE+D++ KR + + + LL MDG +EG
Sbjct: 434 RLRQIFAEATLRHPSIIFIDELDALCPKREGAQSE-VEKRVVASLLTLMDGIGSEGSEGR 492
Query: 110 VVVL 113
V+VL
Sbjct: 493 VLVL 496
Score = 69 (29.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
N+++ D+ G++ K +LK+ VE+ LK+P+ FS
Sbjct: 623 NVSWSDIGGLENIKLKLKQAVEWPLKHPKSFS 654
Score = 53 (23.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
+ +T+ + G++ + ++EI+E LK PE F +
Sbjct: 347 QFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKS 381
>TAIR|locus:2036099 [details] [associations]
symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
Genevestigator:O04019 Uniprot:O04019
Length = 423
Score = 135 (52.6 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 26/65 (40%), Positives = 45/65 (69%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNE 108
A+ VRD F AK+++PC++FIDEID++G KR +S + +T+ +LL ++DGF ++
Sbjct: 249 AKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDD 308
Query: 109 GVVVL 113
+ V+
Sbjct: 309 RIKVI 313
Score = 38 (18.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+++ QEL E IV + + E+F
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQF 196
>UNIPROTKB|Q9FXT8 [details] [associations]
symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
KEGG:osa:4328642 Uniprot:Q9FXT8
Length = 400
Score = 116 (45.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQ 106
AR +R++F A+D PC++F+DEID++G +R + + +T+ +LL ++DGF +
Sbjct: 219 ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDE 276
Score = 57 (25.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ V G+ + +EL+E +E L NPE F
Sbjct: 136 NVSYSAVGGLSDQIRELRESIELPLMNPELF 166
>WB|WBGene00018991 [details] [associations]
symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
Length = 432
Score = 115 (45.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF A++ P ++F+DEIDS+G+ R +T+ +LL ++DGF +
Sbjct: 254 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATK 313
Query: 109 GVVVL 113
+ V+
Sbjct: 314 NIKVI 318
Score = 59 (25.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ V G+D +E+KE++E +K+PE F
Sbjct: 173 TYEMVGGLDTQIKEIKEVIELPVKHPELF 201
>WB|WBGene00007352 [details] [associations]
symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
"collagen and cuticulin-based cuticle development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
InParanoid:P54811 NextBio:884814 Uniprot:P54811
Length = 809
Score = 109 (43.4 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP---YANQTINQLLAEMDGFHQNEGV 110
VRD+F A+ PCV+F DE+DS+ R +++ INQ+L EMDG + + V
Sbjct: 565 VRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNV 624
Query: 111 VVL 113
++
Sbjct: 625 FII 627
Score = 88 (36.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ + P ++FIDEID++ KR TN + + ++QLL MDG +V
Sbjct: 292 LRKAFEECEKNQPAILFIDEIDAIAPKREKTNGEVE---RRIVSQLLTLMDGVKGRSNLV 348
Query: 112 VL 113
V+
Sbjct: 349 VI 350
Score = 72 (30.4 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E N T+ D+ G+ K+EL+E+V++ +++PEK+
Sbjct: 476 ETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKY 509
Score = 53 (23.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N I + D+ GV + ++KE+VE L++P+ F
Sbjct: 200 EEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLF 236
>UNIPROTKB|P54811 [details] [associations]
symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
NextBio:884814 Uniprot:P54811
Length = 809
Score = 109 (43.4 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP---YANQTINQLLAEMDGFHQNEGV 110
VRD+F A+ PCV+F DE+DS+ R +++ INQ+L EMDG + + V
Sbjct: 565 VRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNV 624
Query: 111 VVL 113
++
Sbjct: 625 FII 627
Score = 88 (36.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+R F+ + P ++FIDEID++ KR TN + + ++QLL MDG +V
Sbjct: 292 LRKAFEECEKNQPAILFIDEIDAIAPKREKTNGEVE---RRIVSQLLTLMDGVKGRSNLV 348
Query: 112 VL 113
V+
Sbjct: 349 VI 350
Score = 72 (30.4 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E N T+ D+ G+ K+EL+E+V++ +++PEK+
Sbjct: 476 ETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKY 509
Score = 53 (23.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 2 DPEEIN-ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+ E +N I + D+ GV + ++KE+VE L++P+ F
Sbjct: 200 EEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLF 236
>UNIPROTKB|P46470 [details] [associations]
symbol:psmc5 "26S protease regulatory subunit 8"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
KEGG:xla:397968 Uniprot:P46470
Length = 461
Score = 113 (44.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAK-RTNSVLHPYANQTINQLLAEMDGFHQNEG 109
AR VR+LF A++ P ++F+DEIDS+G++ S +T+ +LL ++DGF +
Sbjct: 223 ARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGGSGGDSEVQRTMLELLNQLDGFEATKN 282
Query: 110 VVVL 113
+ V+
Sbjct: 283 IKVI 286
Score = 61 (26.5 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
T++ + G+D+ +E+KE++E +K+PE F
Sbjct: 142 TYEMIGGLDKQIKEIKEVIELPVKHPEHF 170
>TAIR|locus:2159996 [details] [associations]
symbol:RPT4A "regulatory particle triple-A ATPase 4A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
Length = 399
Score = 115 (45.5 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN--SVLHPYANQTINQLLAEMDGFHQNE 108
AR +R++F A++ PC++F+DEID++G +R + + +T+ +LL ++DGF N
Sbjct: 218 ARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-DNL 276
Query: 109 GVV 111
G V
Sbjct: 277 GKV 279
Score = 57 (25.1 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
NI++ V G+ + +EL+E +E L NPE F
Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPELF 165
Score = 34 (17.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKN 32
+E N T D++ + Q + E++ L N
Sbjct: 44 KEFNKTEDDLKSLQSVGQIIGEVLRPLDN 72
>WB|WBGene00003119 [details] [associations]
symbol:mac-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006629 "lipid metabolic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0019915 "lipid
storage" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 GO:GO:0002119 GO:GO:0006629
GO:GO:0000003 GO:GO:0019915 HSSP:Q01853 eggNOG:COG0464
HOGENOM:HOG000223225 GO:GO:0017111 KO:K14571 OMA:NDMTLKE
GeneTree:ENSGT00570000079239 EMBL:AL117203 PIR:T31591
RefSeq:NP_496814.1 ProteinModelPortal:Q9NAG4 SMR:Q9NAG4
IntAct:Q9NAG4 STRING:Q9NAG4 PaxDb:Q9NAG4 EnsemblMetazoa:Y48C3A.7
GeneID:174974 KEGG:cel:CELE_Y48C3A.7 UCSC:Y48C3A.7 CTD:174974
WormBase:Y48C3A.7 InParanoid:Q9NAG4 NextBio:886252
ArrayExpress:Q9NAG4 Uniprot:Q9NAG4
Length = 813
Score = 121 (47.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
R VR +F+ A+D PCV+F DEID++ KR++ A + +NQLL EMDG + V
Sbjct: 614 RAVRTVFQRARDSQPCVIFFDEIDALVPKRSHGESSGGA-RLVNQLLTEMDGVEGRQKVF 672
Query: 112 VL 113
++
Sbjct: 673 LI 674
Score = 87 (35.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102
++R LF AK +PC++ +D+ID++ A R + + ++QL + +D
Sbjct: 286 KIRRLFDTAKQNSPCILILDDIDAI-APRRETAQREMERRVVSQLCSSLD 334
Score = 59 (25.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFST 38
+ P E ++ F+ + G D E+ + LK P+ F+T
Sbjct: 196 ISPRESHVKFEHIGGADRQFLEVCRLAMHLKRPKTFAT 233
Score = 32 (16.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 16 VDEAKQELKEIVEFLKNPE 34
V++ K+EL ++ +L+ +
Sbjct: 471 VEQIKEELDRVLAWLQGDD 489
>UNIPROTKB|Q9NAG4 [details] [associations]
symbol:mac-1 "Protein MAC-1" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0040007 GO:GO:0002119 GO:GO:0006629 GO:GO:0000003
GO:GO:0019915 HSSP:Q01853 eggNOG:COG0464 HOGENOM:HOG000223225
GO:GO:0017111 KO:K14571 OMA:NDMTLKE GeneTree:ENSGT00570000079239
EMBL:AL117203 PIR:T31591 RefSeq:NP_496814.1
ProteinModelPortal:Q9NAG4 SMR:Q9NAG4 IntAct:Q9NAG4 STRING:Q9NAG4
PaxDb:Q9NAG4 EnsemblMetazoa:Y48C3A.7 GeneID:174974
KEGG:cel:CELE_Y48C3A.7 UCSC:Y48C3A.7 CTD:174974 WormBase:Y48C3A.7
InParanoid:Q9NAG4 NextBio:886252 ArrayExpress:Q9NAG4 Uniprot:Q9NAG4
Length = 813
Score = 121 (47.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
R VR +F+ A+D PCV+F DEID++ KR++ A + +NQLL EMDG + V
Sbjct: 614 RAVRTVFQRARDSQPCVIFFDEIDALVPKRSHGESSGGA-RLVNQLLTEMDGVEGRQKVF 672
Query: 112 VL 113
++
Sbjct: 673 LI 674
Score = 87 (35.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMD 102
++R LF AK +PC++ +D+ID++ A R + + ++QL + +D
Sbjct: 286 KIRRLFDTAKQNSPCILILDDIDAI-APRRETAQREMERRVVSQLCSSLD 334
Score = 59 (25.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFST 38
+ P E ++ F+ + G D E+ + LK P+ F+T
Sbjct: 196 ISPRESHVKFEHIGGADRQFLEVCRLAMHLKRPKTFAT 233
Score = 32 (16.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 16 VDEAKQELKEIVEFLKNPE 34
V++ K+EL ++ +L+ +
Sbjct: 471 VEQIKEELDRVLAWLQGDD 489
>TAIR|locus:2061639 [details] [associations]
symbol:RPT2b "regulatory particle AAA-ATPase 2b"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
"female gamete generation" evidence=IGI] [GO:0010078 "maintenance
of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
Length = 443
Score = 121 (47.7 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
VR+LF+ A D +P +VFIDEID+VG KR NS +T+ +LL ++DGF V
Sbjct: 270 VRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVK 329
Query: 112 VL 113
V+
Sbjct: 330 VI 331
Score = 52 (23.4 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
++ D+ G++ QE+KE VE L +PE +
Sbjct: 186 SYADIGGLEAQIQEIKEAVELPLTHPELY 214
Score = 31 (16.0 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
EE D+RG + L+E+++
Sbjct: 96 EEDRSKVDDLRGTPMSVGNLEELID 120
>UNIPROTKB|E2RC37 [details] [associations]
symbol:SPATA5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 KO:K14575
GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 CTD:166378 OMA:NDIRPSA
EMBL:AAEX03011797 RefSeq:XP_540960.2 ProteinModelPortal:E2RC37
Ensembl:ENSCAFT00000006393 GeneID:483840 KEGG:cfa:483840
Uniprot:E2RC37
Length = 893
Score = 112 (44.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR-TNSVLHPYANQTINQLLAEMDGFHQNEGV 110
R VR++F+ A+ +P ++F DE+D++ +R ++S A++ + QLL EMDG Q + V
Sbjct: 707 RAVREIFRKARAVSPSIIFFDELDALAIERGSSSGAGNVADRVLAQLLTEMDGIEQLKDV 766
Query: 111 VVL 113
+L
Sbjct: 767 TIL 769
Score = 82 (33.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEGV 110
R+R +F A R P ++FIDE+D++ KR + + + + LL MDG +EG
Sbjct: 434 RLRQIFAEATLRHPSIIFIDELDALCPKREGAQ-NEVEKRVVASLLTLMDGIGSEGSEGQ 492
Query: 111 VVL 113
V++
Sbjct: 493 VLV 495
Score = 69 (29.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
N+++ D+ G++ K +LK+ VE+ LK+PE F
Sbjct: 623 NVSWSDIGGLENIKLKLKQAVEWPLKHPESF 653
Score = 53 (23.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
+ + +T+ + G+ + ++EI+E LK PE F +
Sbjct: 344 EDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKS 381
Score = 31 (16.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1 VDPEEINITFKDVRGVDE 18
V+ E+ +F+ RG +E
Sbjct: 283 VEVTELKCSFESARGGNE 300
>POMBASE|SPBC23G7.12c [details] [associations]
symbol:rpt6 "19S proteasome regulatory subunit Rpt6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
Length = 403
Score = 114 (45.2 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQN 107
+R VR+LF A++ P ++F+DEIDS+G+ R++S +T+ +LL ++DGF
Sbjct: 224 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEAT 283
Query: 108 EGVVVL 113
+ + V+
Sbjct: 284 KNIKVI 289
Score = 58 (25.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T++ V G+++ +E+KE++E +K+PE F +
Sbjct: 143 TYEMVGGLEKQIKEIKEVIELPVKHPELFES 173
>TAIR|locus:2024822 [details] [associations]
symbol:RPT1A "regulatory particle triple-A 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
Length = 426
Score = 106 (42.4 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C+VF DE+D++G R + + +T+ +++ ++DGF
Sbjct: 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306
Query: 109 GVVVL 113
+ VL
Sbjct: 307 NIKVL 311
Score = 67 (28.6 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++++E+VE + +PEKF
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 194
>POMBASE|SPBC16C6.07c [details] [associations]
symbol:rpt1 "19S proteasome regulatory subunit Rpt1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
IntAct:O42931 STRING:O42931 PRIDE:O42931
EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
Length = 438
Score = 108 (43.1 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 258 ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 317
Query: 109 GVVVL 113
+ VL
Sbjct: 318 NIKVL 322
Score = 65 (27.9 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E + L+E+VE L +PE+F
Sbjct: 172 EKPDVTYGDVGGCKEQIERLREVVELPLLSPERF 205
>FB|FBgn0016983 [details] [associations]
symbol:smid "smallminded" species:7227 "Drosophila
melanogaster" [GO:0016887 "ATPase activity" evidence=ISS;NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 EMBL:AE014296 GO:GO:0022008 GO:GO:0016887 HSSP:Q01853
KO:K14571 GeneTree:ENSGT00570000079239 UniGene:Dm.875 GeneID:38824
KEGG:dme:Dmel_CG8571 CTD:38824 FlyBase:FBgn0016983 GenomeRNAi:38824
NextBio:810567 RefSeq:NP_523959.2 ProteinModelPortal:Q9VS62
SMR:Q9VS62 IntAct:Q9VS62 MINT:MINT-754496 STRING:Q9VS62
PRIDE:Q9VS62 EnsemblMetazoa:FBtr0076851 UCSC:CG8571-RA
InParanoid:Q9VS62 OMA:EFDSLCP PhylomeDB:Q9VS62 ArrayExpress:Q9VS62
Bgee:Q9VS62 Uniprot:Q9VS62
Length = 944
Score = 124 (48.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL-HPYANQTINQLLAEMDGFHQNEGV 110
R VR F+ A++ PCV+F DE DS+ KR++ + + +NQLL EMDG + +GV
Sbjct: 742 RAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGV 801
Query: 111 VVL 113
+L
Sbjct: 802 YIL 804
Score = 102 (41.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNE---G 109
R+R++F A +PCV+FIDEID++G R + ++QL++ +D NE
Sbjct: 331 RIREVFDQAIGYSPCVLFIDEIDAIGGNR-QWASKDMERRIVSQLISSLDNLKANEFGQS 389
Query: 110 VVVL 113
VVV+
Sbjct: 390 VVVI 393
Score = 57 (25.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 9 TFKDVRGVDEAKQELKEIVEFLKNPE 34
+F+D+ G+D +EL E++ +K+PE
Sbjct: 249 SFRDIGGMDSTLKELCEMLIHIKSPE 274
Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 9 TFKDVRGVDEAKQELK-EIVEFLKNPE 34
T+ D+ +++ ++ELK ++ +K PE
Sbjct: 660 TWDDIGALEKIREELKLAVLAPVKYPE 686
Score = 36 (17.7 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 23 LKEIVEFLKNP-EKFS 37
L E+ FL NP E+F+
Sbjct: 611 LAELTNFLDNPPEEFA 626
>TAIR|locus:2024522 [details] [associations]
symbol:DAA1 "DUO1-activated ATPase 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048235 "pollen sperm cell differentiation"
evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 GO:GO:0017111 GO:GO:0048235
IPI:IPI00517535 RefSeq:NP_849842.1 UniGene:At.16450
ProteinModelPortal:F4I5A3 SMR:F4I5A3 PRIDE:F4I5A3
EnsemblPlants:AT1G64110.2 GeneID:842716 KEGG:ath:AT1G64110
OMA:KANPIVL Uniprot:F4I5A3
Length = 829
Score = 90 (36.7 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
+ EEIN+TFKD+ +DE K+ L+E+V L+ P+ F+
Sbjct: 511 IPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFT 548
Score = 90 (36.7 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
+ VR LF A +P ++F+DE+DS+ +RT H + N+ ++ DG G
Sbjct: 601 KNVRALFTLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGER 660
Query: 112 VL 113
+L
Sbjct: 661 IL 662
>CGD|CAL0005689 [details] [associations]
symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0045899 "positive regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
Length = 444
Score = 105 (42.0 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DE+D++G R + +T+ +L+ ++DGF
Sbjct: 265 ARMVRELFEMARTKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 324
Query: 109 GVVVL 113
+ V+
Sbjct: 325 NIKVM 329
Score = 68 (29.0 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++L+E+VE L +PE+F
Sbjct: 179 EKPDVTYSDVGGCKEQIEKLREVVELPLLSPERF 212
>TAIR|locus:2147670 [details] [associations]
symbol:RPT6A "regulatory particle triple-A ATPase 6A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
Length = 419
Score = 111 (44.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQN 107
+R VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 240 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299
Query: 108 EGVVVL 113
+ VL
Sbjct: 300 NKIKVL 305
Score = 61 (26.5 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T+ + G+D+ +E+KE++E +K+PE F +
Sbjct: 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFES 189
>TAIR|locus:2147685 [details] [associations]
symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
Length = 419
Score = 111 (44.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL---HPYANQTINQLLAEMDGFHQN 107
+R VR+LF A++ P ++F+DEIDS+G+ R S +T+ +LL ++DGF +
Sbjct: 240 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299
Query: 108 EGVVVL 113
+ VL
Sbjct: 300 NKIKVL 305
Score = 61 (26.5 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
T+ + G+D+ +E+KE++E +K+PE F +
Sbjct: 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFES 189
>MGI|MGI:1927170 [details] [associations]
symbol:Spata5 "spermatogenesis associated 5" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 MGI:MGI:1927170 GO:GO:0007275
GO:GO:0005739 GO:GO:0005524 GO:GO:0030154 GO:GO:0007283
eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
GeneTree:ENSGT00700000104502 GO:GO:0017111 HSSP:Q9WZ49
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073
CTD:166378 HOVERGEN:HBG108504 OMA:NDIRPSA OrthoDB:EOG43FGWF
EMBL:AF049099 EMBL:AK011111 EMBL:AK144998 EMBL:AL669927
EMBL:AL627074 EMBL:AL645968 IPI:IPI00649667 RefSeq:NP_001156983.1
RefSeq:NP_067318.2 UniGene:Mm.172679 ProteinModelPortal:Q3UMC0
SMR:Q3UMC0 PhosphoSite:Q3UMC0 PaxDb:Q3UMC0 PRIDE:Q3UMC0
Ensembl:ENSMUST00000029277 Ensembl:ENSMUST00000108112 GeneID:57815
KEGG:mmu:57815 UCSC:uc008pau.2 InParanoid:Q3UMC0 NextBio:314006
Bgee:Q3UMC0 Genevestigator:Q3UMC0 Uniprot:Q3UMC0
Length = 893
Score = 114 (45.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR-TNSVLHPYANQTINQLLAEMDGFHQNEGV 110
R VR++F+ A+ P ++F DE+D++ +R ++S A++ + QLL EMDG Q + V
Sbjct: 707 RAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNV 766
Query: 111 VVL 113
VL
Sbjct: 767 TVL 769
Score = 80 (33.2 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 53 RVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ--NEG- 109
R+R +F A R P ++FIDE+D++ KR + + + LL MDG +EG
Sbjct: 434 RLRQIFAEATLRHPSIIFIDELDALCPKREGAQSE-VEKRVVASLLTLMDGIGSEGSEGR 492
Query: 110 VVVL 113
V+VL
Sbjct: 493 VLVL 496
Score = 66 (28.3 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
N+++ D+ G++ K +LK+ VE+ LK+P+ F+
Sbjct: 623 NVSWSDIGGLENIKLKLKQAVEWPLKHPKSFN 654
Score = 53 (23.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST 38
+ +T+ + G++ + ++EI+E LK PE F +
Sbjct: 347 QFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKS 381
>UNIPROTKB|F1NDQ1 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
Length = 385
Score = 123 (48.4 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 211 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 270
Query: 109 GVVVL 113
V V+
Sbjct: 271 QVKVI 275
Score = 47 (21.6 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 131 YSDIGGLDKQIQELVEAIVLPMNHKEKF 158
>UNIPROTKB|F1P3L9 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
Length = 389
Score = 123 (48.4 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 215 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 274
Query: 109 GVVVL 113
V V+
Sbjct: 275 QVKVI 279
Score = 47 (21.6 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 135 YSDIGGLDKQIQELVEAIVLPMNHKEKF 162
>UNIPROTKB|Q60HE0 [details] [associations]
symbol:PEX6 "Peroxin Pex6p" species:9541 "Macaca
fascicularis" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005777 "peroxisome" evidence=ISS]
[GO:0005829 "cytosol" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0006625 "protein targeting to
peroxisome" evidence=ISS] [GO:0007031 "peroxisome organization"
evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0016561 "protein import into peroxisome matrix,
translocation" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0032403 "protein complex binding" evidence=ISS]
[GO:0042623 "ATPase activity, coupled" evidence=ISS] [GO:0050821
"protein stabilization" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0050821
GO:GO:0005777 GO:GO:0032403 GO:GO:0008022 GO:GO:0042623
GO:GO:0016561 HOVERGEN:HBG002311 EMBL:AB125187
ProteinModelPortal:Q60HE0 Uniprot:Q60HE0
Length = 570
Score = 117 (46.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV-LHPYANQTINQLLAEMDGFHQNEGVVV 112
VR++F A+ PC++F DE+DS+ R S ++ ++QLLAE+DG H + V V
Sbjct: 375 VREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFV 434
Query: 113 L 113
+
Sbjct: 435 I 435
Score = 58 (25.5 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFS 37
P+ ++++ DV G+ E K+E+ E ++ L++PE S
Sbjct: 287 PKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLS 322
>UNIPROTKB|E9PM69 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
Bgee:E9PM69 Uniprot:E9PM69
Length = 397
Score = 123 (48.4 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 223 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 282
Query: 109 GVVVL 113
V V+
Sbjct: 283 QVKVI 287
Score = 47 (21.6 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 143 YSDIGGLDKQIQELVEAIVLPMNHKEKF 170
>TAIR|locus:2161258 [details] [associations]
symbol:RPT3 "regulatory particle triple-A ATPase 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
"ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
stimulus" evidence=RCA] [GO:0009853 "photorespiration"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
GermOnline:AT5G58290 Uniprot:Q9SEI4
Length = 408
Score = 113 (44.8 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNEG 109
R VRD+F+ AK+ P ++FIDE+D++ R ++ + + +LL +MDGF Q
Sbjct: 235 RMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN 294
Query: 110 VVVL 113
V V+
Sbjct: 295 VKVI 298
Score = 57 (25.1 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVE 28
E+ ++++ D+ G D KQE++E VE
Sbjct: 148 EKPDVSYNDIGGCDIQKQEIREAVE 172
>FB|FBgn0028687 [details] [associations]
symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
Length = 433
Score = 105 (42.0 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 254 ARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
Query: 109 GVVVL 113
+ VL
Sbjct: 314 NIKVL 318
Score = 66 (28.3 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
++T+ DV G E ++L+E+VE L +PEKF
Sbjct: 171 DVTYSDVGGCKEQIEKLREVVETPLLHPEKF 201
>UNIPROTKB|O42587 [details] [associations]
symbol:psmc3-a "26S protease regulatory subunit 6A-A"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
Length = 405
Score = 122 (48.0 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 249 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNM 308
Query: 109 GVVVL 113
V V+
Sbjct: 309 QVKVI 313
Score = 47 (21.6 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 169 YSDIGGLDKQIQELVEAIVLPMNHKEKF 196
>UNIPROTKB|F1PBK7 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
Length = 439
Score = 123 (48.4 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 265 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 324
Query: 109 GVVVL 113
V V+
Sbjct: 325 QVKVI 329
Score = 47 (21.6 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 185 YSDIGGLDKQIQELVEAIVLPMNHKEKF 212
>UNIPROTKB|P17980 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
"blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=TAS] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
Length = 439
Score = 123 (48.4 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 265 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 324
Query: 109 GVVVL 113
V V+
Sbjct: 325 QVKVI 329
Score = 47 (21.6 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 185 YSDIGGLDKQIQELVEAIVLPMNHKEKF 212
>RGD|61905 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0001824 "blastocyst development"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
Length = 439
Score = 123 (48.4 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 265 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 324
Query: 109 GVVVL 113
V V+
Sbjct: 325 QVKVI 329
Score = 47 (21.6 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 185 YSDIGGLDKQIQELVEAIVLPMNHKEKF 212
>MGI|MGI:1098754 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
NextBio:295874 Bgee:O88685 Genevestigator:O88685
GermOnline:ENSMUSG00000002102 Uniprot:O88685
Length = 442
Score = 123 (48.4 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 268 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 327
Query: 109 GVVVL 113
V V+
Sbjct: 328 QVKVI 332
Score = 47 (21.6 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 188 YSDIGGLDKQIQELVEAIVLPMNHKEKF 215
>UNIPROTKB|Q6P6U2 [details] [associations]
symbol:Psmc3 "26S protease regulatory subunit 6A"
species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
Genevestigator:Q6P6U2 Uniprot:Q6P6U2
Length = 442
Score = 123 (48.4 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 268 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 327
Query: 109 GVVVL 113
V V+
Sbjct: 328 QVKVI 332
Score = 47 (21.6 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 188 YSDIGGLDKQIQELVEAIVLPMNHKEKF 215
>UNIPROTKB|F1SID4 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
Length = 446
Score = 123 (48.4 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF N
Sbjct: 272 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 331
Query: 109 GVVVL 113
V V+
Sbjct: 332 QVKVI 336
Score = 47 (21.6 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 10 FKDVRGVDEAKQELKE-IVEFLKNPEKF 36
+ D+ G+D+ QEL E IV + + EKF
Sbjct: 192 YSDIGGLDKQIQELVEAIVLPMNHKEKF 219
>UNIPROTKB|E1C4V5 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
Length = 424
Score = 104 (41.7 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 245 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 304
Query: 109 GVVVL 113
+ VL
Sbjct: 305 NIKVL 309
Score = 66 (28.3 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++L+E+VE L +PE+F
Sbjct: 159 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPERF 192
>DICTYBASE|DDB_G0282241 [details] [associations]
symbol:DDB_G0282241 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0282241 GO:GO:0005524 eggNOG:COG0464
GO:GO:0017111 EMBL:AAFI02000046 RefSeq:XP_640304.1
ProteinModelPortal:Q54ST1 EnsemblProtists:DDB0205288 GeneID:8623480
KEGG:ddi:DDB_G0282241 InParanoid:Q54ST1 OMA:IEMISID Uniprot:Q54ST1
Length = 825
Score = 118 (46.6 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRT---NSVLHPYANQTINQLLAEMDGFHQNEGV 110
+RD+FK A+ TP ++F DEID++ +KR NS ++ ++ L EMDG Q GV
Sbjct: 652 IRDIFKKARQTTPSILFFDEIDAIVSKRNLSDNSSGDNAQSRVLSTFLNEMDGVEQLNGV 711
Query: 111 VVL 113
+V+
Sbjct: 712 IVI 714
Score = 59 (25.8 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF 29
N+++ D+ G+D+ K+EL++ +E+
Sbjct: 566 NVSWDDIGGLDDIKEELRQAIEW 588
>POMBASE|SPBC4.07c [details] [associations]
symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IC] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
Uniprot:P36612
Length = 448
Score = 117 (46.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGFHQNE 108
R VR LF AA++ +P +VFIDEID++G KR S +T+ +LL ++DGF ++
Sbjct: 271 RLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQ 329
Score = 53 (23.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 9 TFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
++ D+ G++ QE+KE VE L +PE +
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELY 217
>UNIPROTKB|F1NFL8 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
Uniprot:F1NFL8
Length = 432
Score = 104 (41.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 253 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 312
Query: 109 GVVVL 113
+ VL
Sbjct: 313 NIKVL 317
Score = 66 (28.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++L+E+VE L +PE+F
Sbjct: 167 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPERF 200
>UNIPROTKB|Q5E9F9 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
Uniprot:Q5E9F9
Length = 433
Score = 104 (41.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 254 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
Query: 109 GVVVL 113
+ VL
Sbjct: 314 NIKVL 318
Score = 66 (28.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++L+E+VE L +PE+F
Sbjct: 168 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPERF 201
>UNIPROTKB|F1PPH7 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
Uniprot:F1PPH7
Length = 433
Score = 104 (41.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 254 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
Query: 109 GVVVL 113
+ VL
Sbjct: 314 NIKVL 318
Score = 66 (28.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++L+E+VE L +PE+F
Sbjct: 168 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPERF 201
>UNIPROTKB|P35998 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
Length = 433
Score = 104 (41.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL--HPYANQTINQLLAEMDGFHQNE 108
AR VR+LF+ A+ + C++F DEID++G R + +T+ +L+ ++DGF
Sbjct: 254 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
Query: 109 GVVVL 113
+ VL
Sbjct: 314 NIKVL 318
Score = 66 (28.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
E+ ++T+ DV G E ++L+E+VE L +PE+F
Sbjct: 168 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPERF 201
WARNING: HSPs involving 306 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 113 101 0.00091 102 3 11 22 0.41 30
29 0.47 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 556
No. of states in DFA: 503 (54 KB)
Total size of DFA: 96 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.57u 0.10s 10.67t Elapsed: 00:00:04
Total cpu time: 10.61u 0.11s 10.72t Elapsed: 00:00:04
Start: Thu Aug 15 15:44:08 2013 End: Thu Aug 15 15:44:12 2013
WARNINGS ISSUED: 2