BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5206
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 66 VLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIA 125
+ + AT A+ +R+ I+ E+++A I ++ VNP +NA++ + +A E+
Sbjct: 6 LWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES-------- 57
Query: 126 LEEDISDKPYLGVPFTSKESTAC-KGLSNTLGL--LARKGKKADADAYIVERVKTAGGIL 182
+++ P+ GVP+ K+ T +G NT + + G +AD DAY V+R++ AG +L
Sbjct: 58 ---ELASGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVL 114
Query: 183 LGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGS 241
LG TN PE+ + +G + NP+NL R+ G SSGG V+A S + G D GS
Sbjct: 115 LGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGS 174
Query: 242 NRIPALYCGVYGHKLTTGGI 261
RIPA CGV G K T G I
Sbjct: 175 VRIPASVCGVVGLKPTRGRI 194
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 112/202 (55%), Gaps = 19/202 (9%)
Query: 66 VLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIA 125
+ + AT A+ +R+ I+ E+++A I ++ VNP +NA++ + +A E+
Sbjct: 6 LWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES-------- 57
Query: 126 LEEDISDKPYLGVPFTSKESTAC-KGLSNTLGL--LARKGKKADADAYIVERVKTAGGIL 182
+++ P+ GVP+ K+ T +G NT + + G +AD DAY V+R++ AG +L
Sbjct: 58 ---ELASGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVL 114
Query: 183 LGNTNIPEL---LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLG 239
LG TN PE+ + +E +G + NP+NL R+ G SSGG V+A S + G D
Sbjct: 115 LGKTNTPEMGNQVTTEPE--AWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAA 172
Query: 240 GSNRIPALYCGVYGHKLTTGGI 261
G+ RIPA CGV G K T G I
Sbjct: 173 GAVRIPASVCGVVGLKPTRGRI 194
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 24/259 (9%)
Query: 70 ATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 129
A +I ++ ++ +EV QA+++R+++++P L A + LEEA+A D +
Sbjct: 3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGL----- 56
Query: 130 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 189
P G+ K++ A +GL T G + +A V R+K G ++LG TN+
Sbjct: 57 ----PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLD 112
Query: 190 EL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 248
E + S + + + + NP++ R G SSGG A ++A + L LG+D GGS R PA +
Sbjct: 113 EFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAF 172
Query: 249 CGVYGHKLTTGGIYGRDGKEG-----KSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNF 303
CGVYG K T YGR + G S+ GP+ + DL PD L A
Sbjct: 173 CGVYGLKPT----YGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDA--- 225
Query: 304 DKSVDLAKLAGGSMEGMLP 322
S+DL ++EG LP
Sbjct: 226 -TSLDLPPRFQEALEGPLP 243
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 13/209 (6%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALE 127
+S +++ + ++ ++ EVV++F +R Q + A + Y +AL++A++ ++
Sbjct: 5 KSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER---- 60
Query: 128 EDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTN 187
+ P G+P K++ +G T + A DA ++ER+K AG +++G TN
Sbjct: 61 ----ELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTN 116
Query: 188 IPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPA 246
+ E + S + + + NP++L R G SSGG A V+ + + LG+D GGS R PA
Sbjct: 117 LDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPA 176
Query: 247 LYCGVYGHKLTTGGIYGRDGKEGKSMLAA 275
+CGV G K T YGR + G A+
Sbjct: 177 SFCGVIGIKPT----YGRVSRYGLVAFAS 201
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 20/225 (8%)
Query: 73 IAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 129
+ ++ + S + QA+++RI ++ P L A+++ +AL+EA A++ +
Sbjct: 16 LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELN-PDALKEA--AERDRERRDG 72
Query: 130 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 189
P G+P K++ ++ + G LA +G + D DAY+V R++ AG ++LG TN+
Sbjct: 73 RLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGKTNLS 131
Query: 190 ELLWSESR--------NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGS 241
E W+ R + GQ+ NPY + + SS G A V+A + + +GT+ GS
Sbjct: 132 E--WANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGS 189
Query: 242 NRIPALYCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAED 284
PA GV G K T G+ RDG S AGP+ + D
Sbjct: 190 IVCPAAINGVVGLKPTV-GLVSRDGIIPISFSQDTAGPMARSVAD 233
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ ++S +
Sbjct: 106 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 165
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV---- 251
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+
Sbjct: 166 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 225
Query: 252 -YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAE 283
G++L+ G+ G + L+ GP+ + E
Sbjct: 226 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 258
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ ++S +
Sbjct: 144 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 203
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV---- 251
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+
Sbjct: 204 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 263
Query: 252 -YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAE 283
G++L+ G+ G + L+ GP+ + E
Sbjct: 264 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 296
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ ++S +
Sbjct: 130 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 189
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV---- 251
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+
Sbjct: 190 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 249
Query: 252 -YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAE 283
G++L+ G+ G + L+ GP+ + E
Sbjct: 250 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 282
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ + S +
Sbjct: 107 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 166
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV---- 251
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+
Sbjct: 167 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 226
Query: 252 -YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAE 283
G++L+ G+ G + L+ GP+ + E
Sbjct: 227 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 259
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ + S +
Sbjct: 100 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 159
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV---- 251
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+
Sbjct: 160 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 219
Query: 252 -YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAE 283
G++L+ G+ G + L+ GP+ + E
Sbjct: 220 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 252
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ + S +
Sbjct: 126 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 185
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV---- 251
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+
Sbjct: 186 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 245
Query: 252 -YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAE 283
G++L+ G+ G + L+ GP+ + E
Sbjct: 246 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 278
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 89/205 (43%), Gaps = 25/205 (12%)
Query: 95 IEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDK----PYLGVPFTSKESTACKG 150
+E+ A D L+E A + +AL E++ P G+P T K+ KG
Sbjct: 21 LEEALERAKAFQDRNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG 80
Query: 151 LSNTLGLLARKGKKAD-----ADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMVYGQS 204
+ R G KA +A V R++ AG +L TN E+ L N G
Sbjct: 81 MPT------RAGTKAPLPPLPEEARAVRRLREAGALLFAKTNXHEIALGITGENPWTGPV 134
Query: 205 NNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGR 264
N + R G SSGG A V+ + LGTD GGS RIPA + GV G K + YGR
Sbjct: 135 RNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPS----YGR 190
Query: 265 DGKEG-----KSMLAAGPIVKHAED 284
EG +S AGP+ + D
Sbjct: 191 VSLEGALPLSRSTDHAGPLTRSVRD 215
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ + S +
Sbjct: 144 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 203
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV---- 251
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+
Sbjct: 204 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 263
Query: 252 -YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAE 283
G++L+ G+ G + L+ GP+ + E
Sbjct: 264 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 296
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 12/226 (5%)
Query: 65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 124
I ES + I++K I +VV+ + IE+ +P + + + A+++A+ D+
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 125 ALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLG 184
A +D D G+P K++ GL T +G ++ ++E++ +L+G
Sbjct: 63 A--KDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIG 120
Query: 185 NTNIPELLWSESRNMVY-GQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 243
N+ E S Y ++ NP++ G SSGG A V+A L LG+D GGS R
Sbjct: 121 KLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIR 180
Query: 244 IPALYCGVYGHKLTTGGIYGRDGKEGKSMLAA-----GPIVKHAED 284
PA YCGV G K T YGR + G A+ GP+ ++ +D
Sbjct: 181 QPAAYCGVVGMKPT----YGRVSRFGLVAFASSLDQIGPLTRNVKD 222
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 25/260 (9%)
Query: 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQK 123
K+ +E +++++ R K + Q +E I++++P++ A + R ++E+
Sbjct: 8 KLTIEECLKLSEEEREK------LPQLSLETIKRLDPHVKAFISVRENVSVEKKGK---- 57
Query: 124 IALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 183
+ G+P K++ G+ T + ++ DA +V+++K AG +++
Sbjct: 58 -----------FWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVV 106
Query: 184 GNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSN 242
G N+ E + S + + + NP++L R G SSGG A VSA V LG+D GGS
Sbjct: 107 GKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSV 166
Query: 243 RIPALYCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPA 300
R PA CGV G+K T G+ R G S+ GPI K D + + D+ A
Sbjct: 167 RQPASLCGVVGYK-PTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDA 225
Query: 301 YNFDKSVDLAKLAGGSMEGM 320
++ VD + GM
Sbjct: 226 TTVNRKVDFLSEIEEGVSGM 245
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 25/249 (10%)
Query: 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQK 123
K+ +E +++++ R K + Q +E I++++P++ A + R ++E+
Sbjct: 9 KLTIEECLKLSEEEREK------LPQLSLETIKRLDPHVKAFISVRENVSVEKKGK---- 58
Query: 124 IALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 183
+ G+P K++ G T + ++ DA +V++ K AG +++
Sbjct: 59 -----------FWGIPVAIKDNILTLGXRTTCASRILENYESVFDATVVKKXKEAGFVVV 107
Query: 184 GNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSN 242
G N+ E S + + + NP++L R G SSGG A VSA V LG+D GGS
Sbjct: 108 GKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSV 167
Query: 243 RIPALYCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPA 300
R PA CGV G+K T G+ R G S+ GPI K D + + D+ A
Sbjct: 168 RQPASLCGVVGYK-PTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDENDA 226
Query: 301 YNFDKSVDL 309
++ VD
Sbjct: 227 TTVNRKVDF 235
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 27/194 (13%)
Query: 84 SVEVVQAFIERIEQVNPYLNAMVD--TRY------------TEALEEAKAADQKIALEED 129
++E +QAF+ + + + D TRY E L EA+A D A
Sbjct: 35 TLEGIQAFLAQGGTIEQVVTEAYDRITRYGDKAVWIALRPREEVLAEARALDASPA---- 90
Query: 130 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 189
+ KP GVPF K++ GL + A + D DA +V R++ AG I+LG TN+
Sbjct: 91 -TGKPLYGVPFAVKDNIDVAGLPCSAACPAFT-YEPDRDATVVARLRAAGAIVLGKTNLD 148
Query: 190 E----LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
+ L+ + S +G ++ +G SS G A V+A LGTD GS R+P
Sbjct: 149 QFATGLVGTRSP---FGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVP 205
Query: 246 ALYCGVYGHKLTTG 259
A + + G K T G
Sbjct: 206 AAFNNLVGVKPTKG 219
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 131 SDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPE 190
SD G K++ G+ G +G DA +V R+ AG + G +
Sbjct: 84 SDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCED 143
Query: 191 LLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYC 249
L +S S G NP++ R G SSGG A LV+ +G D GGS RIPA +C
Sbjct: 144 LCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFC 203
Query: 250 GVYGHKLTTG 259
GV GHK T G
Sbjct: 204 GVVGHKPTFG 213
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 131 SDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPE 190
SD G K++ G+ G +G DA +V R+ AG + G +
Sbjct: 84 SDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCED 143
Query: 191 LLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYC 249
L +S S G NP++ R G SSGG A LV+ +G D GG+ RIPA +C
Sbjct: 144 LCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFC 203
Query: 250 GVYGHKLTTG 259
GV GHK T G
Sbjct: 204 GVVGHKPTFG 213
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG 250
SR+ + NP+N + G SS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG 250
SR+ + NP+N + G +S G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG 250
SR+ + NP+N + G SS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCG 164
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG 250
SR+ + NP+N + G SS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG 250
SR+ + NP+N + GASS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 161 KGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGG 220
+G + +DA +V +K AG ++G T SR+ + NP+N + G SS G
Sbjct: 80 RGWQPRSDAPVVMMLKRAGATIIGKTTTTAF---ASRDPT--ATLNPHNTGHSPGGSSSG 134
Query: 221 EACLVSACGSVLGLGTDLGGSNRIPALYCG 250
A V A L LGT GGS PA YCG
Sbjct: 135 SAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG 250
SR+ + NP+N + G SS G A V A L LGT GG PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCG 164
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG 250
SR+ + NP+N + G SS G A V A L LG GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCG 164
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 208 YNLCR--TTGAS-SGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGR 264
Y + R GAS +GG L+ A +L G D+G + ++ GV+G TG G
Sbjct: 219 YTIARPLHLGASIAGGSPQLIDA---LLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGD 275
Query: 265 DGKEGKSMLAAGPIVKHAEDLLPYSKCLI 293
D +EGK + ++ A+ P + I
Sbjct: 276 DIREGKRTVLLALALQRADKQSPEAATAI 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,712,852
Number of Sequences: 62578
Number of extensions: 479933
Number of successful extensions: 1400
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 29
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)