Query psy5206
Match_columns 407
No_of_seqs 275 out of 1331
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:03:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1.2E-80 4.1E-85 648.5 30.2 306 64-395 2-314 (485)
2 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 2.7E-78 9.1E-83 629.6 23.6 300 65-395 2-307 (478)
3 2dc0_A Probable amidase; struc 100.0 1.5E-77 5.3E-82 617.2 25.8 282 68-394 1-289 (434)
4 1m22_A Peptide amidase, PAM; e 100.0 4.8E-77 1.6E-81 623.9 25.8 296 64-384 7-316 (503)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 8E-77 2.7E-81 617.4 23.7 293 68-395 1-299 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 5.2E-76 1.8E-80 614.7 21.6 287 64-384 5-304 (493)
7 3ppm_A Fatty-acid amide hydrol 100.0 3.2E-75 1.1E-79 616.8 23.4 309 58-398 60-378 (573)
8 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 4.6E-75 1.6E-79 605.1 19.1 292 61-394 3-300 (476)
9 1o9p_A Malonamidase E2; malona 100.0 2E-71 6.8E-76 568.6 22.3 259 68-383 2-265 (414)
10 3a1k_A Amidase; AS family enzy 100.0 4.1E-72 1.4E-76 588.5 7.4 312 58-393 3-331 (521)
11 3shg_B VBHA; ampylation, adeny 58.5 12 0.0004 27.5 4.0 28 70-97 32-59 (61)
12 1nha_A TFIIF-alpha, transcript 24.6 89 0.0031 24.2 4.2 33 69-101 34-68 (82)
13 2lz1_A Nuclear factor erythroi 22.1 67 0.0023 25.2 3.2 39 58-98 33-71 (90)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=1.2e-80 Score=648.48 Aligned_cols=306 Identities=24% Similarity=0.357 Sum_probs=276.8
Q ss_pred hhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHH-HccCcCCCCCCCCcceee
Q psy5206 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI-ALEEDISDKPYLGVPFTS 142 (407)
Q Consensus 64 ~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~-~~g~~l~~~PL~GVPiav 142 (407)
++..+|+.+|+++|++|++|++||+++|++||+++|+.+|||++.++|+|+++|+++|+++ ++|+. +|||||||+|
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~---gpL~GvPi~v 78 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD---GKLFGIPMGI 78 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC---STTTTCEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC---CCcCCCEEEE
Confidence 4778999999999999999999999999999999999999999999999999999999998 66654 8999999999
Q ss_pred eccccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCch
Q psy5206 143 KESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGE 221 (407)
Q Consensus 143 KD~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSgGs 221 (407)
||+|+++|++||+||..++++++.+||++|+|||+||||++||||||||+ +++|.|++||+|+||||++|+||||||||
T Consensus 79 KD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGs 158 (485)
T 3ip4_A 79 KDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGS 158 (485)
T ss_dssp ETTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHH
T ss_pred EcCcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcCCC
Q psy5206 222 ACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD 296 (407)
Q Consensus 222 aaaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d 296 (407)
|++||+|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||+|+|+|+++++++|+|+|
T Consensus 159 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~----~sld~~Gp~aRsv~D~a~~l~vl~g~d 234 (485)
T 3ip4_A 159 AAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFA----SSLDQIGPLTRNVKDNAIVLEAISGAD 234 (485)
T ss_dssp HHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSC----TTTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred HHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcc----cccceeccccCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999 888877 689999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Q psy5206 297 KLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPED 376 (407)
Q Consensus 297 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~ 376 (407)
+.|++..+.+. +.+......+++++||||+.++ +...++|+++++++++++.|+++ |++|++
T Consensus 235 ~~d~~~~~~~~--------------~~~~~~~~~~~~~lrigv~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~ 296 (485)
T 3ip4_A 235 VNDSTSAPVDD--------------VDFTSEIGKDIKGLKVALPKEY---LGEGVADDVKEAVQNAVETLKSL-GAVVEE 296 (485)
T ss_dssp TTCTTSCCCCC--------------CCCSTTTTCCCTTCEEEEEGGG---GSTTSCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred cccccccccCc--------------cchhhhhccCccCcEEEEECCc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 87776543211 1111111225789999999764 23578999999999999999996 999999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy5206 377 LSYIKQFRLGYDVWRYWVS 395 (407)
Q Consensus 377 ~~~~p~~~~~~~~~~~~~~ 395 (407)
+ ++|.+.+..+.|...+.
T Consensus 297 ~-~~p~~~~~~~~~~~~~~ 314 (485)
T 3ip4_A 297 V-SLPNTKFGIPSYYVIAS 314 (485)
T ss_dssp E-CCTTGGGHHHHHHHHHH
T ss_pred e-CCCcHHHHHHHHHHHHH
Confidence 9 99988777777765543
No 2
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=2.7e-78 Score=629.62 Aligned_cols=300 Identities=24% Similarity=0.370 Sum_probs=270.2
Q ss_pred hhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcceeeec
Q psy5206 65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE 144 (407)
Q Consensus 65 l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPiavKD 144 (407)
+..+|+.+|+++|++|++|++||+++|++||+++|+.+|||++.++|+|+++|+++|++ .+||+||||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~--------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER--------ELPLFGIPIAVKD 73 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT--------TSTTTTCEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh--------cCCcCCceEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999865 3899999999999
Q ss_pred cccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q psy5206 145 STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEAC 223 (407)
Q Consensus 145 ~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSgGsaa 223 (407)
+|+++|++||+||..+.++++.+||++|++||+||||++||||||||+ +++|.|+.||+|+||||++|+|||||||||+
T Consensus 74 ~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaa 153 (478)
T 3h0l_A 74 NILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAA 153 (478)
T ss_dssp TBCCTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHH
T ss_pred CccCCCCCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcCCCCC
Q psy5206 224 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL 298 (407)
Q Consensus 224 aVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d~~ 298 (407)
+||+|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||+|+|+|+++++++|+|+|+.
T Consensus 154 aVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~----~~~d~~Gp~arsv~D~a~~l~vl~g~d~~ 229 (478)
T 3h0l_A 154 SVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFA----SSLDQIGVFGRRTEDVALVLEVISGWDEK 229 (478)
T ss_dssp HHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSC----TTTCCEEEEESSHHHHHHHHHHHBSCCTT
T ss_pred HHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCc----cCCCeecceeCCHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999 888877 68999999999999999999999999987
Q ss_pred CCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEcC
Q psy5206 299 PAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLS 378 (407)
Q Consensus 299 d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~~~ 378 (407)
|++..+.+. +.+......+++++||||+.++. ...++|+++++++++++.|+++ |++|+++
T Consensus 230 d~~~~~~p~--------------~~~~~~~~~~~~~lrIgv~~~~~---~~~~~p~v~~a~~~a~~~L~~~-G~~v~~v- 290 (478)
T 3h0l_A 230 DSTSAKVPV--------------PEWSEEVKKEVKGLKIGLPKEFF---EYELQPQVKEAFENFIKELEKE-GFEIKEV- 290 (478)
T ss_dssp CTTSCCCCC--------------CCHHHHTTCCCTTCEEEEEGGGG---GSCCCHHHHHHHHHHHHHHHHT-TCEEEEE-
T ss_pred cccccccCc--------------cchhhhhccCCCCCEEEEECCcc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEEe-
Confidence 776543211 00000011257899999997642 3568999999999999999996 9999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy5206 379 YIKQFRLGYDVWRYWVS 395 (407)
Q Consensus 379 ~~p~~~~~~~~~~~~~~ 395 (407)
++|.+.+..+.|+..+.
T Consensus 291 ~~p~~~~~~~~~~~~~~ 307 (478)
T 3h0l_A 291 SLPHVKYSIPTYYIIAP 307 (478)
T ss_dssp CCTTGGGHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 99988777777655543
No 3
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-77 Score=617.22 Aligned_cols=282 Identities=24% Similarity=0.310 Sum_probs=259.8
Q ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcceeeecccc
Q psy5206 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 147 (407)
Q Consensus 68 ~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPiavKD~i~ 147 (407)
+|+.+|+++|++|++|++||+++|++||+++|+ +|||++.++|+|+++|+++|+++++|+. .+||+||||+|||+|+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD~~~ 77 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV--RGPLHGLPLTVKDLFP 77 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCC--CSTTTTCEEEEETTSC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCC--CCCcCCeeEEEEeccc
Confidence 478999999999999999999999999999999 9999999999999999999999999876 4999999999999999
Q ss_pred CCCccCCcccccccCCCC-CchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q psy5206 148 CKGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLV 225 (407)
Q Consensus 148 vkG~~tT~Gs~~~~~~~a-~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSgGsaaaV 225 (407)
++|++||+||..+ +++ .+||++|+|||+||||++||||||||+ +.+|.|++||+|+||||+.|+|||||||||++|
T Consensus 78 v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaV 155 (434)
T 2dc0_A 78 VKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAV 155 (434)
T ss_dssp BTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHH
T ss_pred cCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHH
Confidence 9999999999999 566 899999999999999999999999999 999999999999999999999999999999999
Q ss_pred hcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcCCCCCCC
Q psy5206 226 SACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPA 300 (407)
Q Consensus 226 Aag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d~~d~ 300 (407)
|+|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||+|+|+|+++++++|+|+ +.|+
T Consensus 156 Aag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~----~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~ 230 (434)
T 2dc0_A 156 ALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLS----RSTDHAGPLTRSVRDAHFLTEILAGE-SIPL 230 (434)
T ss_dssp HHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSC----TTTCCEEEEESSHHHHHHHHHHHHTS-CCCC
T ss_pred HcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCC----CccCeeCcccCCHHHHHHHHHHHhCC-CCCc
Confidence 9999999999999999999999999999999999 777776 68999999999999999999999987 4221
Q ss_pred CCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEcCCC
Q psy5206 301 YNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYI 380 (407)
Q Consensus 301 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~~~~~ 380 (407)
.+++++||||+.+++ ...++|+++++++++++.|+++ |++|+++ ++
T Consensus 231 -----------------------------~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~-~~ 276 (434)
T 2dc0_A 231 -----------------------------EGVQNPVFGVPLDFL---EGRLGVEVRKAFTRLLEDLPAL-RAEVREV-SL 276 (434)
T ss_dssp -----------------------------CCCCSCEEEECHHHH---TTCSCHHHHHHHHHHHHHTTTT-TCEEEEC-CC
T ss_pred -----------------------------ccccCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEEe-CC
Confidence 135789999987643 3568999999999999999996 9999999 98
Q ss_pred CChHHHHHHHHHHH
Q psy5206 381 KQFRLGYDVWRYWV 394 (407)
Q Consensus 381 p~~~~~~~~~~~~~ 394 (407)
| +.+..+.|+..+
T Consensus 277 p-~~~~~~~~~~~~ 289 (434)
T 2dc0_A 277 P-LEGVYEVYTRLV 289 (434)
T ss_dssp C-CTTHHHHHHHHH
T ss_pred C-cHHHHHHHHHHH
Confidence 8 666666555443
No 4
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=4.8e-77 Score=623.90 Aligned_cols=296 Identities=24% Similarity=0.324 Sum_probs=262.3
Q ss_pred hhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcce
Q psy5206 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPF 140 (407)
Q Consensus 64 ~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n---~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPi 140 (407)
++..+++.+|+++|++|++|++||+++|++||+++| |.+||+++.++| |+++|+++|+++++++. .+|||||||
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~--~gpL~GvPi 83 (503)
T 1m22_A 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRL--RGPLHGIPL 83 (503)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCC--CSTTTTCEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCC--CCCcCCcee
Confidence 467789999999999999999999999999999999 999999999988 99999999999988876 499999999
Q ss_pred eeeccccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-c-----CCCCCCCCCCCCCCCCCCCCC
Q psy5206 141 TSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-W-----SESRNMVYGQSNNPYNLCRTT 214 (407)
Q Consensus 141 avKD~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~-----~~t~N~~~G~t~NP~d~~r~~ 214 (407)
+|||+|+++|++||+||..+.++++ +||++|+|||+||||++||||||||+ + .+|+|.+||+|+||||++|+|
T Consensus 84 ~vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~p 162 (503)
T 1m22_A 84 LLKDNINAAPMATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP 162 (503)
T ss_dssp EEETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred EeecccccCCCCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999 99999999999999999999999998 3 478899999999999999999
Q ss_pred CCCCCchhHHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHH
Q psy5206 215 GASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYS 289 (407)
Q Consensus 215 GGSSgGsaaaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll 289 (407)
|||||||||+||+|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||+|+|+|+++++
T Consensus 163 GGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~----~sld~~Gp~arsv~D~a~~l 238 (503)
T 1m22_A 163 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPIS----FSQDTAGPMARSVADAAAVL 238 (503)
T ss_dssp CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSC----TTTCEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCcc----CCCCeeCcccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 788877 68999999999999999999
Q ss_pred HHhcCCCCCCCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q psy5206 290 KCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVV 369 (407)
Q Consensus 290 ~v~~g~d~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~ 369 (407)
++|+|+|+.|++....+.. +.. ..........++++||||+.++ . .++++++++++++++.|+++
T Consensus 239 ~vl~g~d~~d~~~~~~~~~----~~~------~~~~~~~~~~~~~lrIgv~~~~----~-~~~~~v~~a~~~a~~~L~~~ 303 (503)
T 1m22_A 239 TAIAGRDDADPATATMPGR----AVY------DYTARLDPQGLRGKRIGLLQTP----L-LKYRGMPPLIEQAATELRRA 303 (503)
T ss_dssp HHHCCCCTTCGGGGGCTTC----CCC------CGGGGCCTTTTTTCEEEEECSG----G-GGSTTHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCccccccccc----ccc------chhhhccccCCCCCEEEEECcc----c-cCCHHHHHHHHHHHHHHHHc
Confidence 9999999766544321100 000 0000001124689999999763 2 37999999999999999996
Q ss_pred CCCeEEEcCCCCChH
Q psy5206 370 SHSEPEDLSYIKQFR 384 (407)
Q Consensus 370 ~G~~V~~~~~~p~~~ 384 (407)
|++|+++ ++|.+.
T Consensus 304 -G~~v~~~-~~p~~~ 316 (503)
T 1m22_A 304 -GAVVVPV-ELPNQG 316 (503)
T ss_dssp -TCEEEEE-CCTTTT
T ss_pred -CCEEEEe-CCCcHH
Confidence 9999999 888654
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=8e-77 Score=617.38 Aligned_cols=293 Identities=27% Similarity=0.406 Sum_probs=265.1
Q ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcceeeecccc
Q psy5206 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 147 (407)
Q Consensus 68 ~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPiavKD~i~ 147 (407)
|++.+|+++|++|++|++||+++|++||+++|+.+||+++.+ |+|+++|+++|++ .|||||||+|||+|+
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~---------~pL~GvPi~vKD~~~ 70 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPG---------LPLAGLVVAVKDNIA 70 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCS---------CTTTTCEEEEETTBC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCcc---------CCcCCCeEEEECCcc
Confidence 579999999999999999999999999999999999999999 9999999988853 499999999999999
Q ss_pred CCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHh
Q psy5206 148 CKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVS 226 (407)
Q Consensus 148 vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSgGsaaaVA 226 (407)
++|++||+||..++++++.+||++|++||+||||++||||||||+ +.+|.|+.||+|+||||++|+|||||||||++||
T Consensus 71 ~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVA 150 (471)
T 3kfu_E 71 TRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALA 150 (471)
T ss_dssp CTTSCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHH
T ss_pred cCCccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcCCCCCCCC
Q psy5206 227 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAY 301 (407)
Q Consensus 227 ag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d~~d~~ 301 (407)
+|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||+|+|+|+++++++|+|+|+.|++
T Consensus 151 ag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~----~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~ 226 (471)
T 3kfu_E 151 ADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYA----SSLDQIGPMARSVRDLALLMDAAAGPDPLDAT 226 (471)
T ss_dssp TTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSC----TTTCEEEEEESSHHHHHHHHHHHCSCCTTCTT
T ss_pred CCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcc----cccCeecceeCCHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999999999 788876 68999999999999999999999999987776
Q ss_pred CCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEcCCCC
Q psy5206 302 NFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIK 381 (407)
Q Consensus 302 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~~~~~p 381 (407)
....+. . +......+++++||||+.++ + ..++|+++++++++++.|+++ |++|+++ ++|
T Consensus 227 ~~~~~~--------------~-~~~~~~~~~~~lrIgv~~~~---~-~~~~p~v~~a~~~a~~~L~~~-G~~v~~v-~~p 285 (471)
T 3kfu_E 227 SLDLPP--------------R-FQEALEGPLPPLRLGVVREA---L-AGNSPGVERALEEALKVFREL-GLSVREV-SWP 285 (471)
T ss_dssp CCCCCC--------------C-TTCCSCCCCSSCEEEEEGGG---T-TTCCHHHHHHHHHHHHHHHTT-TCEEEEE-CCT
T ss_pred ccCCCc--------------c-hhhhhccCCCCCEEEEECCc---c-CCCCHHHHHHHHHHHHHHHHc-CCeeeee-cCc
Confidence 543210 0 10001125789999999764 2 578999999999999999996 9999999 999
Q ss_pred ChHHHHHHHHHHHh
Q psy5206 382 QFRLGYDVWRYWVS 395 (407)
Q Consensus 382 ~~~~~~~~~~~~~~ 395 (407)
.+.+..+.|...+.
T Consensus 286 ~~~~~~~~~~~~~~ 299 (471)
T 3kfu_E 286 SLPQALAAYYILAP 299 (471)
T ss_dssp TGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 88887777765544
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=5.2e-76 Score=614.66 Aligned_cols=287 Identities=28% Similarity=0.405 Sum_probs=254.7
Q ss_pred hhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcceeee
Q psy5206 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 143 (407)
Q Consensus 64 ~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPiavK 143 (407)
++.. ++.+|+++|++|++|++||+++|++||+++|+.+|||++.++|+|+++|++ | .+||+||||+||
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d----------~gpL~GvPi~vK 72 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A----------SGPFAGVPYLLK 72 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C----------CSTTTTCEEEEE
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c----------CCCcCCcEEEEe
Confidence 4666 999999999999999999999999999999999999999999999999998 7 189999999999
Q ss_pred ccc-cCCCccCCccccccc--CCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy5206 144 EST-ACKGLSNTLGLLARK--GKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSG 219 (407)
Q Consensus 144 D~i-~vkG~~tT~Gs~~~~--~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSg 219 (407)
|+| +++|++||+||..++ ++++.+||++|+|||+||||++||||||||+ +.+|+|++||+|+||||++|++|||||
T Consensus 73 D~~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSg 152 (493)
T 3a2q_A 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSG 152 (493)
T ss_dssp SSSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSH
T ss_pred cCCcCcCCCcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcH
Confidence 999 999999999999999 9999999999999999999999999999999 999999999999999999999999999
Q ss_pred chhHHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CC--C-CCCCCCCCCcceeCCccCChhhHHHHHHH
Q psy5206 220 GEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GI--Y-GRDGKEGKSMLAAGPIVKHAEDLLPYSKC 291 (407)
Q Consensus 220 GsaaaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~--~-p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v 291 (407)
||||+||+|++++|+|||||||||+||+||||||||||+| |. . |.+ .++|++|||+|+|+|+++++++
T Consensus 153 GsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~----~sld~~Gp~arsv~D~a~~l~~ 228 (493)
T 3a2q_A 153 GSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNV----AGAAHEGLFARSVRDIAALLDV 228 (493)
T ss_dssp HHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHH----HTTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCccccccc----ccCceecCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 33 2 322 5799999999999999999999
Q ss_pred hcCCCCCCCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHhcC
Q psy5206 292 LILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMK-VSPMSKDMIQAIRKCVNALKVVS 370 (407)
Q Consensus 292 ~~g~d~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~-~~~~~~~v~~a~~~a~~~L~~~~ 370 (407)
|+|+|+.|++....+. ..+......+++++||||+.+++ + ...++++++++++++++.|+++
T Consensus 229 l~g~d~~d~~~~~~p~--------------~~~~~~~~~~~~~lrIgv~~~~~--~~~~~~~~~v~~a~~~a~~~L~~~- 291 (493)
T 3a2q_A 229 VSGHRPGDTFCAPTAS--------------RPYAQGISENPGSLRVGVLTHNP--VGDFALDPECAAAARGAAAALAAL- 291 (493)
T ss_dssp HBSCCTTCSCCCCCCS--------------SCHHHHTTSCCCSCEEEECCSCT--TCSSCCCHHHHHHHHHHHHHHHHT-
T ss_pred HcCCCCCCcccccCCC--------------cchhhhcccCCCCCEEEEECCcc--ccCCCCCHHHHHHHHHHHHHHHHC-
Confidence 9999987765432110 00000001146889999998753 2 3468999999999999999996
Q ss_pred CCeEEEcCCCCChH
Q psy5206 371 HSEPEDLSYIKQFR 384 (407)
Q Consensus 371 G~~V~~~~~~p~~~ 384 (407)
|++|+++ ++|.+.
T Consensus 292 G~~v~~~-~~~~~~ 304 (493)
T 3a2q_A 292 GHDVNDA-YPEALG 304 (493)
T ss_dssp TCEEEEC-CCGGGG
T ss_pred CCEEEEe-CCCccC
Confidence 9999999 877443
No 7
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=3.2e-75 Score=616.77 Aligned_cols=309 Identities=26% Similarity=0.399 Sum_probs=268.0
Q ss_pred CCCcc-chhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCC
Q psy5206 58 LPPVK-NKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYL 136 (407)
Q Consensus 58 ~p~~~-~~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~ 136 (407)
.|+++ ++|+.+++.+|+++|++|++|++||+++|++||+++|+.+||+++..++ ++++|+++|+ .+|||
T Consensus 60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~~---------~gpL~ 129 (573)
T 3ppm_A 60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAPR---------QGLLY 129 (573)
T ss_dssp CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCCT---------TCTTT
T ss_pred CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhhh---------cCCcC
Confidence 57765 7799999999999999999999999999999999999999999998765 5566554432 38999
Q ss_pred CcceeeeccccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCC
Q psy5206 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTG 215 (407)
Q Consensus 137 GVPiavKD~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~G 215 (407)
||||+|||+|+++|++||+||..+.+.++.+||++|++||+||||++||||||||+ +++|.|++||+|+||||++|+||
T Consensus 130 GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~G 209 (573)
T 3ppm_A 130 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPG 209 (573)
T ss_dssp TCEEEEETTBCCBTCCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCC
T ss_pred CCeEEEEcccCCCCCCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCchhHHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHH
Q psy5206 216 ASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSK 290 (407)
Q Consensus 216 GSSgGsaaaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~ 290 (407)
||||||||+||+|++++|+|||||||||+||+||||||||||+| |+.|.+......+|++|||+|+|+|++++++
T Consensus 210 GSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~ 289 (573)
T 3ppm_A 210 GSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLK 289 (573)
T ss_dssp SSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 7877663333468999999999999999999
Q ss_pred HhcCCCCCCCCCCcchhhhhhhcCCCcCCCCCCCCCCC--CCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy5206 291 CLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDK--PVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKV 368 (407)
Q Consensus 291 v~~g~d~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~ 368 (407)
+|+|.| +|..|+.. .+.++.. ....+++||||+.+++ ...++|+++++++++++.|++
T Consensus 290 ~l~~~d---~~~~d~~~--------------~~~~~~~~~~~~~~~lrigv~~~~~---~~~~~p~v~~a~~~a~~~L~~ 349 (573)
T 3ppm_A 290 ALLCEH---LFTLDPTV--------------PPLPFREEVYRSSRPLRVGYYETDN---YTMPSPAMRRALIETKQRLEA 349 (573)
T ss_dssp HHSSHH---HHHHCTTS--------------CCCCCCHHHHTCCCCCEEEECSCCS---SSCCCHHHHHHHHHHHHHHHH
T ss_pred HHhccc---ccccCCCC--------------CccccchhhcccCCCCEEEEEcccC---CCCCCHHHHHHHHHHHHHHHH
Confidence 999876 22222211 1122211 1246899999998765 456899999999999999999
Q ss_pred cCCCeEEEcCCCCChHHHHHHH-HHHHhcCC
Q psy5206 369 VSHSEPEDLSYIKQFRLGYDVW-RYWVSKEK 398 (407)
Q Consensus 369 ~~G~~V~~~~~~p~~~~~~~~~-~~~~~~~~ 398 (407)
+ ||+|+++ ++|.+.+++..+ ...+..+.
T Consensus 350 ~-G~~v~~~-~~p~~~~~~~~~~~~~~~~dg 378 (573)
T 3ppm_A 350 A-GHTLIPF-LPNNIPYALEVLSTGGLFSDG 378 (573)
T ss_dssp T-TCEEEEC-CCTTHHHHHHTHHHHHHTTBT
T ss_pred C-CCEEEEe-cCccHHHHHHHHHHHHHhhhh
Confidence 6 9999999 999988888644 34555444
No 8
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=4.6e-75 Score=605.12 Aligned_cols=292 Identities=23% Similarity=0.332 Sum_probs=258.6
Q ss_pred ccchhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcce
Q psy5206 61 VKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPF 140 (407)
Q Consensus 61 ~~~~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPi 140 (407)
++.++..+++.+| |++|++|++||+++|++||+++|+.+|||++.++|+|+ |+ . +||+||||
T Consensus 3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~------~---gpL~GvPi 64 (476)
T 2gi3_A 3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK------K---GKFWGIPV 64 (476)
T ss_dssp SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC------C---STTTTCEE
T ss_pred CccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc------c---CCcCCceE
Confidence 3556888899999 99999999999999999999999999999999988777 22 1 79999999
Q ss_pred eeeccccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy5206 141 TSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSG 219 (407)
Q Consensus 141 avKD~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSg 219 (407)
+|||+|+++|++||+||..++++++.+||++|+|||+||||++||||||||+ +.+|.|++||+|+||||+.|+||||||
T Consensus 65 ~vKD~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSg 144 (476)
T 2gi3_A 65 AIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSG 144 (476)
T ss_dssp EEETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSH
T ss_pred EEEcCccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred chhHHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcC
Q psy5206 220 GEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLIL 294 (407)
Q Consensus 220 GsaaaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g 294 (407)
||||+||+|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||+|+|+|+++++++|+|
T Consensus 145 GsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~----~sld~~Gp~arsv~D~a~~l~~l~g 220 (476)
T 2gi3_A 145 GSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFA----SSLDQIGPITKTVRDAAILMEIISG 220 (476)
T ss_dssp HHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSC----TTTCEEEEEESSHHHHHHHHHHHBS
T ss_pred HHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcc----cCCCeeeeeeCCHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999 888877 6899999999999999999999999
Q ss_pred CCCCCCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeE
Q psy5206 295 PDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEP 374 (407)
Q Consensus 295 ~d~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V 374 (407)
+|+.|+...+.+. . +......+++++||||+.++ +...++++++++++++++.|+++ |++|
T Consensus 221 ~d~~d~~~~~~p~--------------~-~~~~~~~~~~~lrig~~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v 281 (476)
T 2gi3_A 221 RDENDATTVNRKV--------------D-FLSEIEEGVSGMKFAVPEEI---YEHDIEEGVSERFEEALKLLERL-GAKV 281 (476)
T ss_dssp CBTTBTTCCSCCC--------------C-SSTTTTSCCTTCEEEEEGGG---GGSCCCHHHHHHHHHHHHHHHHT-TCEE
T ss_pred CCCCCccccCCCc--------------c-hhhhhhcCCCCCEEEEECcc---ccCCCCHHHHHHHHHHHHHHHHC-CCEE
Confidence 9977665432110 0 00001124688999999763 23568999999999999999996 9999
Q ss_pred EEcCCCCChHHHHHHHHHHH
Q psy5206 375 EDLSYIKQFRLGYDVWRYWV 394 (407)
Q Consensus 375 ~~~~~~p~~~~~~~~~~~~~ 394 (407)
+++ ++|.+.+....|...+
T Consensus 282 ~~~-~~p~~~~~~~~~~~~~ 300 (476)
T 2gi3_A 282 ERV-KIPHIKYSVATYYVIA 300 (476)
T ss_dssp EEE-CCTTGGGHHHHHHHHH
T ss_pred EEe-CCCchHHHHHHHHHHH
Confidence 999 9887766666555443
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2e-71 Score=568.59 Aligned_cols=259 Identities=20% Similarity=0.239 Sum_probs=236.4
Q ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcceeeecccc
Q psy5206 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 147 (407)
Q Consensus 68 ~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPiavKD~i~ 147 (407)
+++.+|+++|++|++|++||+++|++||+++|+.+|||++.++|+| + .. .+|||||||+|||+|+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~------------~~--~gpL~GvPi~vKD~~~ 66 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A------------QA--SGPLRGIAVGIKDIID 66 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C------------CS--SSTTTTCEEEEETTBC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c------------cc--CCCcCCCEEEEEcccc
Confidence 5899999999999999999999999999999999999999998876 2 12 4899999999999999
Q ss_pred CCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHhc
Q psy5206 148 CKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSA 227 (407)
Q Consensus 148 vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~~~~t~N~~~G~t~NP~d~~r~~GGSSgGsaaaVAa 227 (407)
++|++||+||..+.++++.+||++|+|||+||||++||||||||+. .|+ |+|+||||++|+|||||||||++||+
T Consensus 67 v~G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~---~n~--G~t~NP~~~~~~pGGSSgGsAaaVAa 141 (414)
T 1o9p_A 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS---RDP--TATLNPHNTGHSPGGASSGSAAAVGA 141 (414)
T ss_dssp CSSSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS---SCC--CSCCBTTBTTBCCCSSSHHHHHHHHT
T ss_pred cCCcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc---CCC--CCCCCCCCCCCCCCcchHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999993 455 99999999999999999999999999
Q ss_pred CCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcCCCCCCCCC
Q psy5206 228 CGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYN 302 (407)
Q Consensus 228 g~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d~~d~~~ 302 (407)
|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||+|+|+|+++++++|+|++. +
T Consensus 142 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~----~s~d~~Gp~arsv~D~a~~~~~l~g~~~--~-- 213 (414)
T 1o9p_A 142 GMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGARAEDLARGLLAMTGRSE--F-- 213 (414)
T ss_dssp TSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSC----TTTCEEEEEESSHHHHHHHHHHHHCCGG--G--
T ss_pred CCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCC----CccCeeccccCCHHHHHHHHHHhcCCCc--c--
Confidence 99999999999999999999999999999999 777776 6899999999999999999999999651 0
Q ss_pred CcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEcCCCCC
Q psy5206 303 FDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQ 382 (407)
Q Consensus 303 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~~~~~p~ 382 (407)
. . ..+++++||||+.+++ +..++|+++++++++++.|+++ |++|+++ ++|.
T Consensus 214 -------------------~--~---~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~-~~~~ 264 (414)
T 1o9p_A 214 -------------------S--G---IVPAKAPRIGVVRQEF---AGAVEPAAEQGLQAAIKAAERA-GASVQAI-DLPE 264 (414)
T ss_dssp -------------------S--S---CCCCSSCEEEECCCGG---GCCCCHHHHHHHHHHHHHHHHT-TCEEEEC-CCCH
T ss_pred -------------------c--c---ccCCCCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEEe-cCcc
Confidence 0 0 1136789999997753 4578999999999999999996 9999999 8874
Q ss_pred h
Q psy5206 383 F 383 (407)
Q Consensus 383 ~ 383 (407)
.
T Consensus 265 ~ 265 (414)
T 1o9p_A 265 A 265 (414)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=4.1e-72 Score=588.51 Aligned_cols=312 Identities=21% Similarity=0.286 Sum_probs=264.5
Q ss_pred CCCccchhhhccHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhCCCCceEE-ecChHHHHHHHHHHhHH---------HHc
Q psy5206 58 LPPVKNKIVLESATQIAKKIRNKNITS-VEVVQAFIERIEQVNPYLNAMV-DTRYTEALEEAKAADQK---------IAL 126 (407)
Q Consensus 58 ~p~~~~~l~~~sa~~La~~ir~g~lt~-~evv~a~i~Ri~~~n~~lNav~-~~~~e~Al~~A~~~D~~---------~~~ 126 (407)
.++++.+-+.+++.++...|.+++++. +|++++++++++++++..|+++ ...++++ .++.+.|+. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 81 (521)
T 3a1k_A 3 TIRPDDKAIDAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIP 81 (521)
T ss_dssp CCCCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhc
Confidence 355666677889999999999999999 9999999999999987776666 5566666 666666551 112
Q ss_pred cCcCCCCCCCCcceeeeccccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCC
Q psy5206 127 EEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSN 205 (407)
Q Consensus 127 g~~l~~~PL~GVPiavKD~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~ 205 (407)
+.. .+||+||||+|||||+++|++||+||..++++++.+||++|+|||+||||++||||||||+ +.+++|..||+|+
T Consensus 82 g~~--~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~ 159 (521)
T 3a1k_A 82 PTS--DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVR 159 (521)
T ss_dssp CSS--CCTTTTCEEEEETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCE
T ss_pred CCC--CCCCCCCEEEEEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcC
Confidence 333 4899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCCchhHHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccC
Q psy5206 206 NPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVK 280 (407)
Q Consensus 206 NP~d~~r~~GGSSgGsaaaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR 280 (407)
||||++|+||||||||||+||+|++++|+|||||||||+||+||||||||||+| |++|.+ .++|++|||||
T Consensus 160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~----~sld~~Gp~aR 235 (521)
T 3a1k_A 160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIE----RTIDHLGPITR 235 (521)
T ss_dssp ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSC----GGGCEEEEEES
T ss_pred CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcc----cccCeeCceeC
Confidence 999999999999999999999999999999999999999999999999999999 888877 69999999999
Q ss_pred ChhhHHHHHHHhcCCCCCCCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHH
Q psy5206 281 HAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIR 360 (407)
Q Consensus 281 ~v~Dl~~ll~v~~g~d~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~ 360 (407)
+|+|+++++++|+|+|+.|+...... +. ..+......+++++||||+.+.. ....++++++++++
T Consensus 236 sv~D~a~~l~vlag~d~~D~~~~~~~------~~-------~~~~~~l~~~~~~lrIgv~~~~~--~~~~~~~~v~~a~~ 300 (521)
T 3a1k_A 236 TVHDAALMLSVIAGRDGNDPRQADSV------EA-------GDYLSTLDSDVDGLRIGIVREGF--GHAVSQPEVDDAVR 300 (521)
T ss_dssp SHHHHHHHHHHHCSCCSSCTTSCTTC------CC-------CCSSTTTTSCCTTCEEEEEGGGS--CCSSSCHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCCccccccC------CC-------cchhhhhccCccCcEEEEECccc--cccCCCHHHHHHHH
Confidence 99999999999999987776542110 00 00111111247899999987631 22468999999999
Q ss_pred HHHHHHHhcCCCeEEEcCCCCChHHHHHHHHHH
Q psy5206 361 KCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYW 393 (407)
Q Consensus 361 ~a~~~L~~~~G~~V~~~~~~p~~~~~~~~~~~~ 393 (407)
++++.|+++ |++|+++ ++|.+.+...+|..+
T Consensus 301 ~a~~~L~~~-Ga~v~ev-~~p~~~~~~~~~~~~ 331 (521)
T 3a1k_A 301 AAAHSLTEI-GCTVEEV-NIPWHLHAFHIWNVI 331 (521)
T ss_dssp HHHHGGGGG-TCEEEEE-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCEEEEe-CCCchHhHHHHHHHH
Confidence 999999996 9999999 998777666666543
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=58.55 E-value=12 Score=27.46 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy5206 70 ATQIAKKIRNKNITSVEVVQAFIERIEQ 97 (407)
Q Consensus 70 a~~La~~ir~g~lt~~evv~a~i~Ri~~ 97 (407)
+.++.+.+-+|++|..++++.|.+||+.
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 5567889999999999999999999975
No 12
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=24.55 E-value=89 Score=24.16 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=27.8
Q ss_pred cHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhCCC
Q psy5206 69 SATQIAKKIRNKN--ITSVEVVQAFIERIEQVNPY 101 (407)
Q Consensus 69 sa~~La~~ir~g~--lt~~evv~a~i~Ri~~~n~~ 101 (407)
+..||.++++++. +++.|.++.+.+=+++.||.
T Consensus 34 TT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki~p~ 68 (82)
T 1nha_A 34 TTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPE 68 (82)
T ss_dssp CHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHCCE
T ss_pred cHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCHH
Confidence 4789999999875 79999999998888888774
No 13
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.08 E-value=67 Score=25.24 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=33.3
Q ss_pred CCCccchhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q psy5206 58 LPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQV 98 (407)
Q Consensus 58 ~p~~~~~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~ 98 (407)
+|-.-++|..++..|+.++++...+|.+|+ ++|.-|.+.
T Consensus 33 LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql--~lIrdiRRR 71 (90)
T 2lz1_A 33 IPFPVEKIINLPVVDFNEMMSKEQFNEAQL--ALIRDIRRR 71 (90)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHH--HHHHHHHHH
T ss_pred CCCCHHHHHHCCHHHHHHHHHHcCCCHHHH--HHHHHHHHh
Confidence 788889999999999999999999999987 455555554
Done!