RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5206
(407 letters)
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 198 bits (505), Expect = 4e-59
Identities = 99/305 (32%), Positives = 146/305 (47%), Gaps = 34/305 (11%)
Query: 86 EVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKES 145
E+V+A+++R E NP LNA V + EAL +AKAAD++ A +E P GVP + K++
Sbjct: 1 ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG---PLHGVPISLKDN 57
Query: 146 TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMVYGQS 204
KG+ T G A +G DA +VER++ AG ++LG TN+ E + S + N +G +
Sbjct: 58 IDVKGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPT 117
Query: 205 NNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG----- 259
NP++L RT G SSGG A V+A L +GTD GGS RIPA +CG+ G K T G
Sbjct: 118 RNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRY 177
Query: 260 GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEG 319
G+ S+ GP+ + ED + D S
Sbjct: 178 GVVPY----SSSLDHVGPLARTVEDAALLLDVIAGYDP----ADPTSAPS---------- 219
Query: 320 MLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK----VVSHSEPE 375
+P + L L++ E + P ++ +A+RK AL+ V EP
Sbjct: 220 PVPDFAEPLKKSLKGLRIGVPREDFYFSLDP---EVQRAVRKAAAALEALGHEVVEVEPP 276
Query: 376 DLSYI 380
L +
Sbjct: 277 SLKHA 281
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 196 bits (500), Expect = 5e-58
Identities = 105/320 (32%), Positives = 150/320 (46%), Gaps = 28/320 (8%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEAL--EEAKAADQKIAL 126
+A ++A +R K +++VE+V+A++ RIE +NP LNA V AL EA AAD ++A
Sbjct: 8 TAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAA 67
Query: 127 EEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNT 186
E + P GVP K++ GL T G A + DA +VER++ AG ++LG T
Sbjct: 68 GEPLG--PLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKT 125
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + S + N +G + NP+NL R G SSGG A V+A L LG+D GGS RIP
Sbjct: 126 NMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIP 185
Query: 246 ALYCGVYGHKLTTGGI-YGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFD 304
A +CG+ G K T G + S+ GP+ + D + PD +
Sbjct: 186 AAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPP 245
Query: 305 KSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN 364
LAG DL L++ +E G P+ D+ A V
Sbjct: 246 PPPVPPALAGK---------------DLKGLRIGVPKELGG--GGPLDPDVRAAFEAAVK 288
Query: 365 ALK-----VVSHSEPEDLSY 379
AL+ VV S P
Sbjct: 289 ALEAAGAEVVEVSLPLLSDD 308
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 191 bits (488), Expect = 3e-56
Identities = 93/249 (37%), Positives = 129/249 (51%), Gaps = 14/249 (5%)
Query: 60 PVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKA 119
++ AT++A + ++SVE+ I RIE+ + +NA+V + A A+A
Sbjct: 4 KAADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARA 63
Query: 120 ADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAG 179
AD A E P LG+P T KES GL T G + DA V R+K AG
Sbjct: 64 ADAARARGER---GPLLGIPVTVKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAG 120
Query: 180 GILLGNTNIPELL--WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 237
++LG TN+P L W +S N +YG +NNP++L RT G SSGG A ++A L +G+D
Sbjct: 121 AVILGKTNVPLGLQDW-QSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSD 179
Query: 238 LGGSNRIPALYCGVYGHKLTTG-------GIYGRDGKEGKSMLA-AGPIVKHAEDLLPYS 289
+GGS R+PA YCGVY HK T G G++ LA AGP+ + A DL
Sbjct: 180 IGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLL 239
Query: 290 KCLILPDKL 298
+ PD L
Sbjct: 240 DVMAGPDPL 248
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 160 bits (406), Expect = 2e-44
Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 11/225 (4%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
SA ++A +R++++++ E +A + R++ VNP +NA+VD R EAL +A A D A +
Sbjct: 9 SAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGD 68
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
D P GVP T K + G + T G+ +K A AD+ +V+ ++ AG +++G TN
Sbjct: 69 DPG--PLAGVPVTVKVNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNT 126
Query: 189 PE--LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPA 246
P W N ++G++ NP++ T G SSGG A V+A + GTD+GGS R PA
Sbjct: 127 PAFSYRWFTD-NPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPA 185
Query: 247 LYCGVYGHKLTTGGI--YGRDGKE----GKSMLAAGPIVKHAEDL 285
CGV+G + T G + Y E + M GP+ + DL
Sbjct: 186 YACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADL 230
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 155 bits (393), Expect = 2e-42
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 57 PLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEAL-E 115
P P + IV SA +++ IR + ++ VEV++A++ IE+VNP +NA+V R +AL
Sbjct: 1 PASPPPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLA 60
Query: 116 EAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERV 175
EA D +A E G+P K+ KG+ TLG + DA +VER+
Sbjct: 61 EAAEKDAALARGE--YRGWLHGMPQAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERM 118
Query: 176 KTAGGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGL 234
+ AG I +G TN PE L S + N VYG + NPY+ R+ G SSGG A ++ +
Sbjct: 119 RAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVAD 178
Query: 235 GTDLGGSNRIPALYCGVYGHKLTTG 259
G+D+ GS R PA + VYG + + G
Sbjct: 179 GSDMMGSLRNPAAFNNVYGFRPSQG 203
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 144 bits (366), Expect = 8e-39
Identities = 77/221 (34%), Positives = 104/221 (47%), Gaps = 8/221 (3%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S T+ A +R+ ++ +E+V+A + R LNA AL A+ D + A
Sbjct: 12 SLTEAAAALRSGRLSCLELVEALLARAAA-LAPLNAFTTVDAEGALAAARRIDAQRAAGA 70
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
GVP K++ G+ T G A G DA +V+R+ AG + LG N+
Sbjct: 71 A---LLLAGVPIVIKDNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANM 127
Query: 189 PELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
EL + S N +G NPY+ R G SSGG A V+A + GLGTD GGS RIPA
Sbjct: 128 HELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAA 187
Query: 248 YCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAEDLL 286
CGV G + T G Y DG + GPI + DL
Sbjct: 188 LCGVVGLRPTVGR-YSGDGVVPISHTRDTVGPIARSVADLA 227
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 137 bits (346), Expect = 3e-36
Identities = 71/215 (33%), Positives = 119/215 (55%), Gaps = 10/215 (4%)
Query: 74 AKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDK 133
A+ + + +T+ +++ +++RIE+++ +L A + A EA+AA Q++ E +
Sbjct: 15 ARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL--- 71
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-L 192
P LGVP K+ G T G A G A +DA +V R++ AG +++G TN+PEL +
Sbjct: 72 PLLGVPIAIKDDVDVAGEVTTYGS-AGHGPAATSDAEVVRRLRAAGAVIIGKTNVPELMI 130
Query: 193 WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVY 252
+ ++ +G + NP++ RT G SSGG A V+A + + LG+D GGS RIP+ +CG++
Sbjct: 131 MPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLF 190
Query: 253 GHKLTTGGIY---GRDGKEGKSMLAAGPIVKHAED 284
G K I +G S+ GPI + D
Sbjct: 191 GLKPQRDRISLEPHDGAWQGLSV--NGPIARSVMD 223
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 136 bits (344), Expect = 1e-35
Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 37/226 (16%)
Query: 77 IRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYL 136
++NK I++VE+ QA+++RIE+V+P LNA + EAL +AKAAD K+A E P
Sbjct: 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE---AGPLA 57
Query: 137 GVPFTSK--------ESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
G+P K +T S L + DA +VE++K AG ++LG TN+
Sbjct: 58 GIPIAIKDNICTKGIRTTCA---SKIL-----ENYVPPYDATVVEKLKAAGAVILGKTNM 109
Query: 189 PEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
E + S + N +G + NP++L R G SSGG A V+A + LG+D GGS R PA
Sbjct: 110 DEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAA 169
Query: 248 YCGVYGHKLTTGGI--YGRDGKEGKSMLA-------AGPIVKHAED 284
+CGV G K T G + YG ++A GP + ED
Sbjct: 170 FCGVVGLKPTYGRVSRYG--------LIAFASSLDQIGPFARTVED 207
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 135 bits (342), Expect = 2e-35
Identities = 101/314 (32%), Positives = 151/314 (48%), Gaps = 36/314 (11%)
Query: 65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 124
+ + AT +A+ ++ +T +E+V I + +++NP LNA+V RY EALEEAK
Sbjct: 1 MTYKDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAK------ 54
Query: 125 ALEEDISDKPYLGVPFTSKE-STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 183
+ D S KP+ GVP K+ KG +T G K +A V+R++ G I+L
Sbjct: 55 --QRDFSGKPFAGVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIIL 112
Query: 184 GNTNIPELLWSE-SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSN 242
G +N PE + S + ++G N P++ R G SSGG A LVS+ L +D GGS
Sbjct: 113 GRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSI 172
Query: 243 RIPALYCGVYGHKLTTG----GIYGRDGKEGKSM-LAAGPIVKHAEDLLPYSKCLILPDK 297
RIPA + G+ G K + G G G +G S+ A V+ LL Y
Sbjct: 173 RIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYY--------- 223
Query: 298 LPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQ 357
L Y + LA L+ S+ L +P+ +A FY P SP+S D +
Sbjct: 224 LQMYQMESPFPLATLSKESLFQSL-----QRPLKIA----FYQRSPDG---SPVSLDAAK 271
Query: 358 AIRKCVNALKVVSH 371
A+++ V L+ H
Sbjct: 272 ALKQAVTFLREQGH 285
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 132 bits (334), Expect = 3e-34
Identities = 84/231 (36%), Positives = 110/231 (47%), Gaps = 27/231 (11%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
SA +IA +R +++ V QA + RI + NP LNA AL EA D A E
Sbjct: 8 SAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGE 67
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKK-------ADADAYIVERVKTAGGI 181
+ P GVPF A K L + GL G K A DA V R++ AG +
Sbjct: 68 PLG--PLAGVPF------AVKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAV 119
Query: 182 LLGNTNIPELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGLGTDLG 239
L+G N+ E + + N YG + NP++L R G SSGG A V+A G V LG+D
Sbjct: 120 LVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAA-GLVPFTLGSDTN 178
Query: 240 GSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAA-----GPIVKHAEDL 285
GS R+PA CG++G K T YGR + G A GP + DL
Sbjct: 179 GSIRVPASLCGIFGLKPT----YGRLSRAGSFPFVASLDHIGPFARSVADL 225
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 132 bits (333), Expect = 4e-34
Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 30/243 (12%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
+A ++ R ++ VE QA ++RI++ +P +NA AL A+A++++ E
Sbjct: 8 TAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGE 67
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKA-------DADAYIVERVKTAGGI 181
GVP + K+ + T G +G +A D DA V R++ AG +
Sbjct: 68 PCG--LLDGVPVSIKD------IFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAV 119
Query: 182 LLGNTNIPELLWSE-SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 240
LLG T PE W + + +YG + NP++ T G SSGG A V+ L +GTD GG
Sbjct: 120 LLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGG 179
Query: 241 SNRIPALYCGVYGHKLTTGGI-------YGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLI 293
S RIPA +CG +G K T G + +G ++ GP+ + D +
Sbjct: 180 SVRIPASFCGTFGFKPTFGRVPLYPASPFG-------TLAHVGPMTRTVADAALLLDVIA 232
Query: 294 LPD 296
PD
Sbjct: 233 RPD 235
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 129 bits (327), Expect = 2e-33
Identities = 87/301 (28%), Positives = 141/301 (46%), Gaps = 39/301 (12%)
Query: 73 IAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISD 132
+ + ++ K I+ EV++A ++RIE +NA ++ +AL++AK D+ I
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILT------ 54
Query: 133 KPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL- 191
P G+P K++ + KG+ T + DA ++ER+K AG +++G TN+ E
Sbjct: 55 -PLAGIPIAVKDNISTKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFA 113
Query: 192 LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV 251
+ S + +G + NP+NL R G SSGG A V+A + LG+D GGS R PA +CGV
Sbjct: 114 MGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGV 173
Query: 252 YGHKLTTGGIYGRDGKEG-----KSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKS 306
G K T YGR + G S+ GP + ED+ + DK D +
Sbjct: 174 VGFKPT----YGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKR-----DST 224
Query: 307 VDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNAL 366
S + P + + DL LKV V+E S++M + +++
Sbjct: 225 ---------SAKVPDPEFFEELKKDLKGLKVGVVKE--------FSEEMDKEVQEKFENA 267
Query: 367 K 367
Sbjct: 268 L 268
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 127 bits (321), Expect = 1e-32
Identities = 78/248 (31%), Positives = 119/248 (47%), Gaps = 23/248 (9%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
SA ++ R ++++ VEV +A + I + P+LNA+ A A+A+ + A E
Sbjct: 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGE 67
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
+ P GVP T KE+ A +G+ LG A A ADA R++ AG ++L T +
Sbjct: 68 PLG--PLDGVPVTIKENIATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTM 125
Query: 189 PEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
P+ + S + +G + NP++L + G SS G +A L LGTD+GGS R+PA
Sbjct: 126 PDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAG 185
Query: 248 YCGVYGHKLTTGGI------YGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK---- 297
+CG+ G K + G I GR AGP+ + +D L PD
Sbjct: 186 WCGIVGLKPSLGRIPIDPPYTGR---------CAGPMTRTVDDAALLMSVLSRPDARDGT 236
Query: 298 -LPAYNFD 304
LP + D
Sbjct: 237 SLPPQDID 244
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 122 bits (307), Expect = 1e-30
Identities = 80/230 (34%), Positives = 111/230 (48%), Gaps = 25/230 (10%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S +IA IR+ +++ V +A + RI Q + LNA AL +A D +A
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGS 60
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKK-------ADADAYIVERVKTAGGI 181
+ P GVPF A K L + GL G K A DA +V+R+ AG +
Sbjct: 61 PLG--PLAGVPF------AVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAV 112
Query: 182 LLGNTNIPELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 240
L+G N+ E + + N YG + NP++L R G SSGG A V+A LG+D G
Sbjct: 113 LVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNG 172
Query: 241 SNRIPALYCGVYGHKLTTGGIYGRDGKEG-----KSMLAAGPIVKHAEDL 285
S R+PA CGV+G K T YGR ++G S+ GP + EDL
Sbjct: 173 SIRVPASLCGVFGLKPT----YGRLSRQGVFPFVASLDHVGPFARSVEDL 218
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 114 bits (288), Expect = 4e-28
Identities = 68/182 (37%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 82 ITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFT 141
+TSVE+V+ + RIE P LNA R AL EA AD++ A + + P LGVP
Sbjct: 32 VTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRL---PLLGVPIA 88
Query: 142 SKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMV 200
K+ G+ G A + A AD+ +V R++ AG +++G TN EL W +
Sbjct: 89 VKDDVDVAGVPTAFG-TAGEVPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPA 147
Query: 201 YGQSNNPYNLCRTTGASSGGEACLVSACGSVLG-LGTDLGGSNRIPALYCGVYGHKLTTG 259
+G + NP++ T G SSGG A V+A G V +G+D GS RIPA + + G K G
Sbjct: 148 FGHTRNPWSRDHTPGGSSGGSAAAVAA-GLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRG 206
Query: 260 GI 261
I
Sbjct: 207 RI 208
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 111 bits (281), Expect = 4e-27
Identities = 68/192 (35%), Positives = 92/192 (47%), Gaps = 11/192 (5%)
Query: 70 ATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 129
A +A+ IR +++ EVV+A I R E VNP LNA+ + A + A
Sbjct: 17 AVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGS------- 69
Query: 130 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 189
+ GVP K++ GL G A + A AD+ + G I LG T +P
Sbjct: 70 -QGGFFSGVPTFIKDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLP 128
Query: 190 ELLWSES-RNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGLGTDLGGSNRIPAL 247
E +S S + G NP+N + GASSGG A LV+A G V + D GGS RIPA
Sbjct: 129 EFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA-GVVPIAHANDGGGSIRIPAA 187
Query: 248 YCGVYGHKLTTG 259
CG+ G K + G
Sbjct: 188 CCGLVGLKPSRG 199
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 106 bits (266), Expect = 5e-25
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 20/231 (8%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQV---NPYLNAMVDTRYTEALEEAKAADQKI 124
E A + + + ++ +A+++RI ++ P LNA+++ +A +A A D +
Sbjct: 6 ERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELN-PDAEADAAALDAE- 63
Query: 125 ALEEDISDKPYLGVPFTSKES-TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 183
+ P G+P K++ A + T G LA G + DA++V R++ AG ++L
Sbjct: 64 -RKAGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVIL 122
Query: 184 GNTNIPELLWSESRNM--------VYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLG 235
G N+ E W+ R+ G + NPY L R+ SS G V+A + + +G
Sbjct: 123 GKANLSE--WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIG 180
Query: 236 TDLGGSNRIPALYCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAED 284
T+ GS PA G+ G K T G + RDG S AGP+ + D
Sbjct: 181 TETDGSITCPAAINGLVGLKPTVGLV-SRDGIVPISHSQDTAGPMTRTVAD 230
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 99.8 bits (249), Expect = 1e-22
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 12/174 (6%)
Query: 82 ITSVEVVQAFIERIEQVN-----PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYL 136
T+VE+V+A++ RI+ + LNA+V R +AL+EA+A+D + A E + P
Sbjct: 21 TTAVELVKAYLARIDAYDGPATGTALNAVV-VRNPDALKEAEASDARRARGETLG--PLD 77
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSES 196
G+P+T+K+S KGL+ G A K A DA+ +ER++ AG I LG TN+P +
Sbjct: 78 GIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGM 137
Query: 197 RNMVYGQSNNPYNLCRTTGA----SSGGEACLVSACGSVLGLGTDLGGSNRIPA 246
+ VYG++ +PYN T SS G +A S GL + S R PA
Sbjct: 138 QRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGPA 191
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 83.5 bits (207), Expect = 2e-17
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 99 NPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLL 158
NPY A + E K A + +AL+++++ GVP + ST
Sbjct: 69 NPY-GAWYVKTSIKGAAEGKLAGKTVALKDNVA---VAGVPMMNGSSTL----------- 113
Query: 159 ARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVY-GQSNNPYNLCRTTGAS 217
+G DA +V R+ AG ++G +L +S + G +NP + + G S
Sbjct: 114 --EGFVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGS 171
Query: 218 SGGEACLVSACGSV-LGLGTDLGGSNRIPALYCGVYGHKLTTG 259
S G A LV+A G V + +G D GGS RIP+ +CG+YG K T G
Sbjct: 172 SSGSAALVAA-GEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHG 213
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 80.8 bits (200), Expect = 1e-16
Identities = 63/186 (33%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 83 TSVEVVQAFIERI-----EQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLG 137
TS +V+A + RI E + + D A A AAD A S P G
Sbjct: 21 TSRALVEAALARIADPAGEGARVFTHVDAD----AARAAADAADALRAAGAAPS--PLAG 74
Query: 138 VPFTSKESTACKGLSNTLGLLARKGKK-ADADAYIVERVKTAGGILLGNTNIPELLWSE- 195
+P + K+ G G A ADA V R++ AG +L+G TN+ E +S
Sbjct: 75 IPVSVKDLFDVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGL 134
Query: 196 SRNMVYGQSNNPYNLC----RTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV 251
N YG NP+ R G SS G A V+ + LGTD GGS RIPA CG+
Sbjct: 135 GLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGL 194
Query: 252 YGHKLT 257
G K T
Sbjct: 195 TGFKPT 200
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 77.8 bits (192), Expect = 1e-15
Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTE--ALEEAKAADQKIAL 126
SA Q+A I++ + V+V + ++ I Y + V TE A+ EA+A+ +
Sbjct: 7 SAAQLAVLIQSGALDPVQVAEQALDAIAS---YADQAVFISLTEERAMREAEASSARW-- 61
Query: 127 EEDISDKPYLGVPFTSKESTACKGLSNTLG-LLARKGKKADADAYIVERVKTAGGILLGN 185
S G+P K+ G T G ++ A DA +V + AG + +G
Sbjct: 62 RAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGR 121
Query: 186 TNIPELLWSE-SRNMVYGQSNNPYN--LCRTTGASSGGEACLVSACGSV-LGLGTDLGGS 241
TN+ E +S N YG NP + + R G SS G A V+A G V + +GTD GGS
Sbjct: 122 TNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAA-GLVPVAMGTDTGGS 180
Query: 242 NRIPALYCGVYGHKLTTGGIYGRDG 266
RIPA + G+ G+K T G Y DG
Sbjct: 181 VRIPAAFNGLVGYKATRGR-YSMDG 204
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 76.1 bits (187), Expect = 6e-15
Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 25/241 (10%)
Query: 61 VKNKIVLE-SATQIAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEE 116
+K K V+ + ++ K I + ++ E+ ++ RI +Q LN++ + A+EE
Sbjct: 63 IKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEIN-PNAMEE 121
Query: 117 AKAADQKIALEEDISDKPYLGVPFTSKES-TACKGLSNTLGLLARKGKKADADAYIVERV 175
A+ DQ+ G+P K++ K + + G K AD DA IV+++
Sbjct: 122 ARKLDQE---RSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQL 178
Query: 176 KTAGGILLGNTNIPELLWSESRNM------VYGQSNNPYN-LCRTTGASSGGEACLVSAC 228
K G +LG N+ E S M GQ+ NPY + T SS G A +V+A
Sbjct: 179 KEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAAD 238
Query: 229 GSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLA-----AGPIVKHAE 283
+ L +GT+ GS PA V G + + G + G LA AGP+ + +
Sbjct: 239 FAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSR----TGIIPLAETLDTAGPMARTVK 294
Query: 284 D 284
D
Sbjct: 295 D 295
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 73.0 bits (180), Expect = 7e-14
Identities = 61/205 (29%), Positives = 83/205 (40%), Gaps = 51/205 (24%)
Query: 78 RNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE-DISDKPYL 136
R +T VV A RI V+ + EA A+AA ALE D + P
Sbjct: 17 RAGTLTPRAVVAALYARIAAVDDP-EVWI-HLRPEADLLAQAA----ALEARDPAALPLY 70
Query: 137 GVPFTSKE---------STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTN 187
GVPF K+ + AC + T + DA +V R++ AG I++G TN
Sbjct: 71 GVPFAVKDNIDVAGLPTTAACPAFAYT----------PERDATVVARLRAAGAIVIGKTN 120
Query: 188 I------------PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGL 234
+ P YG N ++ +G SS G A V+ G V L
Sbjct: 121 LDQFATGLVGTRSP-----------YGAVRNAFDPEYVSGGSSSGSAVAVAL-GLVSFAL 168
Query: 235 GTDLGGSNRIPALYCGVYGHKLTTG 259
GTD GS R+PA + + G K T G
Sbjct: 169 GTDTAGSGRVPAAFNNIVGLKPTLG 193
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 71.8 bits (176), Expect = 1e-13
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 73 IAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 129
I + + +TS E+V ++ RI +Q P +N++++ +A+ A+A D + ++
Sbjct: 18 IQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEIN-PDAIFIAEALDHERKIKG- 75
Query: 130 ISDKPYLGVPFTSKESTACKG-LSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
P G+P K++ + + G +A + + DA++V +++ AG ++LG N+
Sbjct: 76 -VRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANM 134
Query: 189 PELLWSESRNMVY------GQSNNPYN---LCRTTGASSGGEACLVSACGSVLGLGTDLG 239
EL S M GQ+ NPY G SS G A V+A +V+ +GT+
Sbjct: 135 TELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETD 194
Query: 240 GSNRIPALYCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAED 284
GS PA+ V G K T G I R G S AGP + D
Sbjct: 195 GSILSPAVQNSVVGIKPTVGLI-SRRGIIPFTYSQDTAGPFARTVTD 240
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 71.2 bits (175), Expect = 2e-13
Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 165 ADADAYIVERVKTAGGILLGNTNIPELLWSES-RNMVYGQSNNPYNLCRTTGASSGGEAC 223
A A VE++ AG +G T EL +S + +N YG NP R G SS G A
Sbjct: 58 ATRTAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAA 117
Query: 224 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGI 261
V+ + LGTD GGS R PA +CG+YG + T G I
Sbjct: 118 AVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRI 155
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 70.6 bits (173), Expect = 2e-13
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 110 YTE-ALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLG-LLARKGKKADA 167
Y E A EA AAD + S P G + K+ G G ++ R A A
Sbjct: 22 YAERARAEADAADAR--RRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGA 79
Query: 168 DAYIVERVKTAGGILLGNTNIPELLWSE-SRNMVYGQSNNPYNLCRTTGASSGGEACLVS 226
DA IV+R++ AG +++G T++ E ++ N YG+ N + R G SS G A V+
Sbjct: 80 DALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVA 139
Query: 227 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLT 257
S + +G+D GGS RIPA G+ G K T
Sbjct: 140 EGTSEIAIGSDTGGSVRIPAALNGLVGFKPT 170
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 68.5 bits (168), Expect = 2e-12
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 111 TEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAY 170
+ L +A A D + A P GVPF K++ GL T A + DA
Sbjct: 11 EDLLAQAAALDARDA---RPERLPLYGVPFAVKDNIDVAGLPTTAACPAF-AYTPEEDAT 66
Query: 171 IVERVKTAGGILLGNTNIPE----LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVS 226
+V ++ AG I++G TN+ + L+ + S YG N ++ +G SS G A V+
Sbjct: 67 VVALLRAAGAIVVGKTNLDQFATGLVGTRSP---YGAVRNAFDPAYISGGSSSGSAVAVA 123
Query: 227 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG 259
LGTD GS R+PA + G K T G
Sbjct: 124 RGLVPFALGTDTAGSGRVPAALNNIVGLKPTKG 156
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 64.5 bits (157), Expect = 3e-11
Identities = 46/134 (34%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 131 SDKPYLGVPFTSKESTACKGLSNTLGL--LARKGKKADADAYIVERVKTAGGILLGNTNI 188
D P G+ F K+ +G G AR A + A V V G +G T +
Sbjct: 23 HDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIM 82
Query: 189 PELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
E+ +S N YG NP R G SS G A V A LGTD GGS R+PA
Sbjct: 83 DEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 142
Query: 248 YCGVYGHKLTTGGI 261
YCG++G + + G +
Sbjct: 143 YCGIFGFRPSHGAV 156
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 61.2 bits (148), Expect = 5e-10
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 65 IVLESATQIAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEEAKAAD 121
I+ T++ + I K ++ E+ ++ RI +Q LNA+ + T + EA+ D
Sbjct: 162 IIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLD 220
Query: 122 QKIALEEDISDKPYL-GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGG 180
+ E+ ++K L G+P K++ K L + G +A K DA IVE +K G
Sbjct: 221 K-----ENTTNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGA 275
Query: 181 ILLGNTNIPELLWSESRNMVY--------GQSNNPYNLCRTTGASSGGEACLVSACGSVL 232
++LG TN+ E W+ + GQS NPY+ SS G A ++ + +
Sbjct: 276 LILGKTNMSE--WAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAI 333
Query: 233 GLGTDLGGSNRIPALYCGVYGHKLTTG 259
+GT+ GS PA G+K + G
Sbjct: 334 AIGTETNGSIITPASAQSAVGYKPSQG 360
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 45.0 bits (107), Expect = 5e-05
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 18/166 (10%)
Query: 110 YTEALEEAKAADQK----IALEEDISDKPYLGVPFTSKESTA-----CKGLSNTLGLLAR 160
+ +ALEE K + E++ D P FT K++ A S +L
Sbjct: 8 FQKALEELKNDKNNAVSYVFDEKNNKDGPLANCVFTIKDNFATSEGPTHASSKSL----- 62
Query: 161 KGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSG 219
+ K +A +V+++ AG + + EL L +G NP + + G SS
Sbjct: 63 ENFKPSYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSS 122
Query: 220 GEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGI--YG 263
G A + S +G+D G S R+PA + G G K + G I YG
Sbjct: 123 GSAATFNKNIS-FAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYG 167
>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain. The beta-CASP domain is
found C terminal to the beta-lactamase domain in
pre-mRNA 3'-end-processing endonuclease. The active site
of this enzyme is located at the interface of these two
domains.
Length = 124
Score = 29.9 bits (68), Expect = 1.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 272 MLAAGPIVKHAEDLLPYSKCLIL 294
ML G + + + L P K ++
Sbjct: 88 MLEGGRSLHYLKKLAPDPKNTVI 110
>gnl|CDD|226256 COG3733, TynA, Cu2+-containing amine oxidase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 654
Score = 31.3 bits (71), Expect = 1.2
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 322 PAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSK----DMIQAIRKCVNALKVVSHSEPEDL 377
P VDL K KV +++ V P+ + I K + +K + +PE
Sbjct: 195 PIEGLVAIVDLEKKKVVRIDDHP---VVPLPMKRANYGRERIGKALGPVKPIQIIQPEGK 251
Query: 378 SY-IKQFRLGYDVWRYWVS 395
S+ I + + WR+ +
Sbjct: 252 SFTITGDEISWQNWRFRIG 270
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 30.1 bits (68), Expect = 1.2
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 88 VQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 147
VQA R+ ++ + T+ LEE K +++IA E++IS + +
Sbjct: 88 VQALQSRLNKLLSLKD-----DQTKKLEERKGLEKEIA-EKEISRQEL---------DSE 132
Query: 148 CKGLSNTLGLLARKG-----KKADADAYIVE 173
L + L R+ KK D I
Sbjct: 133 IAELERKILELQRQAALLKEKKEAEDKEIAR 163
>gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also
known as Pol kappa, DinB, and Dpo4, is a translesion
synthesis (TLS) polymerase. Translesion synthesis is a
process that allows the bypass of a variety of DNA
lesions. TLS polymerases lack proofreading activity and
have low fidelity and low processivity. They use
damaged DNA as templates and insert nucleotides opposite
the lesions. Known primarily as Pol IV in prokaryotes
and Pol kappa in eukaryotes, this polymerase has a
propensity for generating frameshift mutations. The
eukaryotic Pol kappa differs from Pol IV and Dpo4 by an
N-terminal extension of ~75 residues known as the
"N-clasp" region. The structure of Pol kappa shows DNA
that is almost totally encircled by Pol kappa, with the
N-clasp region augmenting the interactions between DNA
and the polymerase. Pol kappa is more resistant than Pol
eta and Pol iota to bulky guanine adducts and is
efficient at catalyzing the incorporation of dCTP.
Bacterial pol IV has a higher error rate than other
Y-family polymerases.
Length = 334
Score = 30.6 bits (70), Expect = 1.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 32 LIFVRVCFDSFINI---IFSFIYK----------DEAFPLPPVKNKIVLESATQIAKKIR 78
LIFV FD + + I + + DEA+ L + SAT+IAK+IR
Sbjct: 64 LIFVPPRFDKYREVSRQIMEILREYTPLVEPLSIDEAY-LDVTDYVRLFGSATEIAKEIR 122
Query: 79 NK 80
+
Sbjct: 123 AR 124
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 30.8 bits (69), Expect = 1.6
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 6 SASSNTPDQSSRRHSSKNRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPP 60
S SS+ +SS SS + L T V + + + S + PLPP
Sbjct: 6 SNSSDLTTKSSPGTSSFTNMYLLTTLQALVAITLLMILKKLKSSSRNKKLHPLPP 60
>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain. The beta-CASP domain is
found C terminal to the beta-lactamase domain in
pre-mRNA 3'-end-processing endonuclease. The active site
of this enzyme is located at the interface of these two
domains.
Length = 126
Score = 29.0 bits (66), Expect = 2.1
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 272 MLAAGPIVKHAEDLLPYSKCLIL 294
ML G + + L P + ++
Sbjct: 90 MLTGGRSRHYLKRLAPDPRNTVI 112
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 29.7 bits (67), Expect = 3.1
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQK 123
KI E + I+ + ++ +++ V +AF++ E N Y RY E +EE K A +
Sbjct: 75 KIAFEKS--ISAILEDEPLSNGYVEEAFLKH-ELPNGY------DRYEEIMEEQKKAIKD 125
Query: 124 IALEEDISDKPYLG 137
I D+S LG
Sbjct: 126 IL--SDVSHILDLG 137
>gnl|CDD|223482 COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and
metabolism].
Length = 539
Score = 29.5 bits (67), Expect = 4.2
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 149 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ TL +A KG A ADA IV+ V+ AGG+L
Sbjct: 193 PDLAKTLEEIAEKGPDAFYKGEIADA-IVKAVQKAGGLL 230
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 28.9 bits (65), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 154 TLGLLARKGKKADADAYIVERVKTAGGILLGNTN 187
T GL+AR + + D V+ + GG +LG TN
Sbjct: 45 TQGLMARPPQYIELDLDQVDDLLRMGGTILGTTN 78
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 28.8 bits (65), Expect = 5.7
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 55 AFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRY 110
AFPL V K A +I K++ I IE++E P++N + +
Sbjct: 42 AFPLAKVLKKNPRAIAEEIVLKLKTGEI---------IEKVEAAGPFINFFLSPQK 88
>gnl|CDD|216247 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.
Length = 495
Score = 28.7 bits (65), Expect = 6.4
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 149 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL----LGNTNIPELLWSESRNM 199
L+ TL L+A +G +A A+A +V ++ AGGI+ L N + E +
Sbjct: 160 PALAKTLELIAEEGPEAFYRGELAEA-LVADLQAAGGIITLEDLANYKV---EVREPLSG 215
Query: 200 VYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGL--GTDLGGSNRIPALY 248
YG SSGG L +L + G DL G N ++
Sbjct: 216 DYG-----GYTVYEPPPSSGGAVLL-----QILNILEGFDLSGPNSAEYVH 256
>gnl|CDD|226399 COG3882, FkbH, Predicted enzyme involved in methoxymalonyl-ACP
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 574
Score = 28.6 bits (64), Expect = 7.0
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 20 SSKNRLTFLRTFLIFVRV----CFDSFINIIFSFIYKDEAFP------LPPVKNKIVLES 69
K F+ TFL+ RV +N + E +P KN V +
Sbjct: 481 EKKESEWFIDTFLMSCRVLGRKVEQRLMNSLEEQ-ALSEGINTIRGYYIPTEKNAPVSDF 539
Query: 70 ATQIAKKIRNKN-ITSVEVVQAFIERIEQVNPYLNAM 105
++ K++ +N +V +I QV P+ +M
Sbjct: 540 YERMGFKLKGENGNKFYDVC-----KISQVEPHPVSM 571
>gnl|CDD|217659 pfam03652, UPF0081, Uncharacterized protein family (UPF0081).
Length = 134
Score = 27.4 bits (62), Expect = 7.2
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 55 AFPLPPVKNKIVLESATQIAKKIRNKNITSV----------------EVVQAFIERIEQV 98
A PL ++ K ++A+ I+ + + V+ F R+++
Sbjct: 25 ASPLETIRRKNGNPDLEELAELIKEWQPDGIVVGLPLNMDGSEGEMTKRVRKFARRLKKR 84
Query: 99 NPYLNAMVDTRYT--EALEEAKAADQKIALEEDISDK 133
+VD R T EA + A +++ D
Sbjct: 85 FGLPVELVDERLTTVEAERILREAGLSRKKRKEVVDS 121
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 929
Score = 28.4 bits (63), Expect = 8.2
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 22/122 (18%)
Query: 1 MCSPKSASSNTPDQSSRRHSSKNRLTFLRTFLIFVRVCFDS-FINIIFSFIYKDEAFPLP 59
+ PK D ++KN L R ++++ + +S F+ + D+
Sbjct: 750 LTGPKCTDLKVKDPEQYGFNAKNLLR--RMVMVYINLRSESKFV----EAVASDKRS--- 800
Query: 60 PVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKA 119
+ A +I + + + +E +++FI R+E+V R EA+EE
Sbjct: 801 --FDIDFFRRALRICENKYLISESQIEELRSFINRLEKV----------RVIEAVEEEDM 848
Query: 120 AD 121
D
Sbjct: 849 GD 850
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,693,609
Number of extensions: 2013609
Number of successful extensions: 2062
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1996
Number of HSP's successfully gapped: 52
Length of query: 407
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 308
Effective length of database: 6,546,556
Effective search space: 2016339248
Effective search space used: 2016339248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)