RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5206
(407 letters)
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 274 bits (702), Expect = 5e-87
Identities = 78/314 (24%), Positives = 138/314 (43%), Gaps = 38/314 (12%)
Query: 62 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAAD 121
++ Q+ +K+++ ++ V ++ + +VN N + + ++A
Sbjct: 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR 124
Query: 122 QKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGI 181
Q GVP + KE + KG +TLGL +G +++D +V+ +K G +
Sbjct: 125 QG----------LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAV 174
Query: 182 LLGNTNIPE-LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 240
+TN+P+ + + N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GG
Sbjct: 175 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 234
Query: 241 SNRIPALYCGVYGHKLTTGGI--YGR----DGKEGKSMLAAGPIVKHAEDLLPYSKCLIL 294
S R P+ +CG+ G K T + G G+ L+ GP+ + E L K L+
Sbjct: 235 SIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVESLALCLKALLC 293
Query: 295 PDKLPAYNFDKSVDLAKLAGGSMEGMLPA-YNFDKPVDLAKLKVFYVEEPGDMKVSPMSK 353
+ D +V P + + L+V Y E SP
Sbjct: 294 EH---LFTLDPTV-------------PPLPFREEVYRSSRPLRVGYYETDNYTMPSP--- 334
Query: 354 DMIQAIRKCVNALK 367
M +A+ + L+
Sbjct: 335 AMRRALIETKQRLE 348
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 199 bits (508), Expect = 4e-59
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 29/226 (12%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
AT A+ +R+ I+ E+++A I ++ VNP +NA++ + +A E++ A
Sbjct: 9 DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASG------ 62
Query: 129 DISDKPYLGVPFTSKESTAC-KGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGN 185
P+ GVP+ K+ T +G NT + G +AD DAY V+R++ AG +LLG
Sbjct: 63 -----PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGK 117
Query: 186 TNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGLGTDLGGSNR 243
TN PE+ + +G + NP+NL R+ G SSGG V A + G D G+ R
Sbjct: 118 TNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAV-AAALSPVAHGNDAAGAVR 176
Query: 244 IPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYS 289
IPA CGV G K T GR ++ GP+V ++++ +
Sbjct: 177 IPASVCGVVGLKPT----RGR--------ISPGPLVTDSDNVAGAA 210
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 162 bits (413), Expect = 6e-46
Identities = 63/222 (28%), Positives = 96/222 (43%), Gaps = 14/222 (6%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
+ + + T + +++ +ER + NA+ A +EA A +++ +
Sbjct: 2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQ 60
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
P G+P T K+ KG+ G A + +A V R++ AG +L TN+
Sbjct: 61 VRG--PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPE-EARAVRRLREAGALLFAKTNM 117
Query: 189 PELLW-SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
E+ N G N + R G SSGG A V+ + LGTD GGS RIPA
Sbjct: 118 HEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAG 177
Query: 248 YCGVYGHKLTTGGIYGRDGKEGKSMLA-----AGPIVKHAED 284
+ GV G K + YGR EG L+ AGP+ + D
Sbjct: 178 FNGVVGFKPS----YGRVSLEGALPLSRSTDHAGPLTRSVRD 215
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 151 bits (384), Expect = 2e-41
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 20/226 (8%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S + I++K I +VV+ + IE+ +P + + + A+++A+ D+ A ++
Sbjct: 7 SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
G+P K++ GL T +L G ++ ++E++ +L+G
Sbjct: 67 MDG--KLFGIPMGIKDNIITNGLETTCASKMLE--GFVPIYESTVMEKLHKENAVLIGKL 122
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + + + ++ NP++ G SSGG A V+A L LG+D GGS R P
Sbjct: 123 NMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQP 182
Query: 246 ALYCGVYGHKLTTGGIYGRDGKEGKSMLA-------AGPIVKHAED 284
A YCGV G K T YGR + G ++A GP+ ++ +D
Sbjct: 183 AAYCGVVGMKPT----YGRVSRFG--LVAFASSLDQIGPLTRNVKD 222
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 148 bits (375), Expect = 4e-40
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 30/234 (12%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIA 125
+ ++ + S + QA+++RI ++ P L A++ +AL+EA D++
Sbjct: 12 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVI-ELNPDALKEAAERDRERR 70
Query: 126 LEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGN 185
P G+P K++ ++ + G LA +G + D DAY+V R++ AG ++LG
Sbjct: 71 DGRLRG--PLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGK 127
Query: 186 TNIPELLW-----SESRNM---VYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 237
TN+ E W ++S + GQ+ NPY + + SS G A V+A + + +GT+
Sbjct: 128 TNLSE--WANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTE 185
Query: 238 LGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLA-------AGPIVKHAED 284
GS PA GV G K T G + RDG ++ AGP+ + D
Sbjct: 186 TDGSIVCPAAINGVVGLKPTVGLV-SRDG-----IIPISFSQDTAGPMARSVAD 233
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 146 bits (370), Expect = 2e-39
Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 26/226 (11%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S +++ + ++ ++ EVV++F +R Q + A + Y +AL++A++ ++
Sbjct: 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKEREL--- 62
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
P G+P K++ +G T +L A DA ++ER+K AG +++G T
Sbjct: 63 -----PLFGIPIAVKDNILVEGEKTTCASKILE--NFVAPYDATVIERLKKAGALIVGKT 115
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + S + + + NP++L R G SSGG A V+ + + LG+D GGS R P
Sbjct: 116 NLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQP 175
Query: 246 ALYCGVYGHKLTTGGIYGRDGKEGKSMLA-------AGPIVKHAED 284
A +CGV G K T YGR + G ++A G + ED
Sbjct: 176 ASFCGVIGIKPT----YGRVSRYG--LVAFASSLDQIGVFGRRTED 215
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 145 bits (369), Expect = 2e-39
Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 28/226 (12%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
A +I ++ ++ +EV QA+++R+++++P L A + + LEEA+A D + L
Sbjct: 2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFL-SLNERLLEEAEAVDPGLPLA- 59
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
G+ K++ A +GL T G LL +A V R+K G ++LG T
Sbjct: 60 --------GLVVAVKDNIATRGLRTTAGSRLLE--NFVPPYEATAVARLKALGALVLGKT 109
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + S + + + + NP++ R G SSGG A ++A + L LG+D GGS R P
Sbjct: 110 NLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP 169
Query: 246 ALYCGVYGHKLTTGGIYGRDGKEGKSMLA-------AGPIVKHAED 284
A +CGVYG K T YGR + G ++A GP+ + D
Sbjct: 170 AAFCGVYGLKPT----YGRVSRFG--LIAYASSLDQIGPMARSVRD 209
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 141 bits (358), Expect = 3e-38
Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 29/222 (13%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S + ++I ++ + IE ++A V +++ A L
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFV------RHDKSARAQASGPLR- 55
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 56 --------GIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTT 107
Query: 189 PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 248
+ + NP+N + G +S G A V A L LGT GGS PA Y
Sbjct: 108 TAFASRDP-----TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAY 162
Query: 249 CGVYGHKLTTGGIYGRDGKEGKSMLA-----AGPIVKHAEDL 285
CG K + + G + G AEDL
Sbjct: 163 CGTAAIKPS----FRMLPTVGVKCYSWALDTVGLFGARAEDL 200
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 132 bits (334), Expect = 2e-34
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 45/268 (16%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
I + ++ ++ Q +E I++++P++ A + R ++E+
Sbjct: 8 RKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG---------- 57
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
+ G+P K++ G+ T +L ++ DA +V+++K AG +++G
Sbjct: 58 -----KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKA 110
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + S + + + NP++L R G SSGG A VSA V LG+D GGS R P
Sbjct: 111 NLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP 170
Query: 246 ALYCGVYGHKLTTGGIYGRDGKEGKSMLA-------AGPIVKHAEDLLPYSKCLIL---- 294
A CGV G+K T YG + G ++A GPI K D IL
Sbjct: 171 ASLCGVVGYKPT----YGLVSRYG--LVAFASSLDQIGPITKTVRD------AAILMEII 218
Query: 295 --PDKLPAYNFDKSVDLAKLAGGSMEGM 320
D+ A ++ VD + GM
Sbjct: 219 SGRDENDATTVNRKVDFLSEIEEGVSGM 246
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 123 bits (312), Expect = 2e-31
Identities = 56/236 (23%), Positives = 81/236 (34%), Gaps = 22/236 (9%)
Query: 63 NKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQ 122
+ + K R + ++ + ++Q+ T A+ A
Sbjct: 12 DAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPL 71
Query: 123 KIALEEDI----SDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTA 178
SD G K++ G+ G +G DA +V R+ A
Sbjct: 72 SAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAA 131
Query: 179 GGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 237
G + G +L S G NP++ R G SSGG A LV+ +G D
Sbjct: 132 GATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGD 191
Query: 238 LGGSNRIPALYCGVYGHKLTTGGI--YGRDGKEGKSMLA-------AGPIVKHAED 284
GGS RIPA +CGV GHK T G + G GPI + D
Sbjct: 192 QGGSIRIPAAFCGVVGHKPTFGLVPYTG--------AFPIERTIDHLGPITRTVHD 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 5e-08
Identities = 74/454 (16%), Positives = 121/454 (26%), Gaps = 126/454 (27%)
Query: 13 DQSSRRHSSKNRLTFLRTFL-IFVR--VCFD--SFINIIFSFIYKDEAFPLPPVKNKIVL 67
+ ++ K+ L F FV C D I S D + +
Sbjct: 10 ETGEHQYQYKD---ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVN-PYLNAMVDTRYTE-ALEEAKAADQKIA 125
+ + +K E+VQ F+E + ++N +L + + T + ++ +Q+
Sbjct: 67 -----LFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 126 LEEDISDKPYLGVPFTSKESTACKGLSN-------TL-GLLARKGKK--ADADAYIVERV 175
L D V + L + G+L GK A D + +V
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGKTWVA-LDVCLSYKV 176
Query: 176 KTA--GGIL---LGNTNIPELLWSESRNMVY-----------GQSNNPYNL------CRT 213
+ I L N N PE + + ++Y SN + R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 214 TGASSGGEACL-----------VSA----CGSVLGLGTDLGGSNRIPALYCGVYGHKLTT 258
S E CL +A C +L ++ + A H
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSA---ATTTHISLD 292
Query: 259 GGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLA-KLAGGSM 317
E KS+L + LP P + S+
Sbjct: 293 HHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNP-------------RRLSIIAESI 337
Query: 318 EGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDL 377
L ++ K V+ KL I +N L EP +
Sbjct: 338 RDGLATWDNWKHVNCDKLT--------------------TIIESSLNVL------EPAEY 371
Query: 378 SYIKQFR-LG---YDVW-------RYWVSKEKDD 400
K F L W K D
Sbjct: 372 R--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Score = 54.1 bits (129), Expect = 6e-08
Identities = 52/387 (13%), Positives = 98/387 (25%), Gaps = 148/387 (38%)
Query: 128 EDISDKPYLGVPFTSKE-------STACKGLSNTLGLLARKGKK--------ADADAY-- 170
+D+ D P + + +E A G L K ++ Y
Sbjct: 36 KDVQDMP-KSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 171 IVERVKTAGGILLGNTNIPEL---LWSESRNMVY--GQSNNPYNLCR-------TTGASS 218
++ +KT P + ++ E R+ +Y Q YN+ R
Sbjct: 94 LMSPIKT-------EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 219 ------------GGEACLVSACG-SVLGLGTDLGGSNRIPALYCGVY----GHKLTTGGI 261
G G + + L + ++ + + +
Sbjct: 147 LRPAKNVLIDGVLG-------SGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 262 ----------YGRDGKEGKSMLAAGPIVKHAE-----DLL---PYSKCL-IL-----PDK 297
+ + + H+ LL PY CL +L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 298 LPAYNF---------DKSVDLAKLAGG-----SMEGMLPAYNFDKPVDL-AK-LKVFYVE 341
A+N K V L+ S++ D+ L K L +
Sbjct: 259 WNAFNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 342 EPGDM-KVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYW--VSKEK 398
P ++ +P +I R G W W V+ +K
Sbjct: 318 LPREVLTTNPRRLSIIAE-----------------------SIRDGLATWDNWKHVNCDK 354
Query: 399 --------------DD----FNQLTIF 407
+ F++L++F
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVF 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 1e-05
Identities = 62/337 (18%), Positives = 98/337 (29%), Gaps = 132/337 (39%)
Query: 7 ASSNTPDQSSRRHSSKNRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFP---LPPVKN 63
A +++ + S S + +T L F I VR C EA+P LPP
Sbjct: 284 AETDSWE--SFFVSVRKAITVL--FFIGVR-C--------------YEAYPNTSLPP--- 321
Query: 64 KIVLESATQIAKK------IRNKNITSVEVVQAFIERIEQVNPYL-----------NA-- 104
I+ +S I N V+ + + + N +L N
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQ------DYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 105 -MVDTRYTEAL-------EEAKAA---DQ-KIALEEDISDKP-----YL--GVPFTSKES 145
+V + ++L +AKA DQ +I E K +L PF S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFSNRFLPVASPFHSH-- 430
Query: 146 TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNT-NIPELLWSESRNMVYGQS 204
LL A I + + IP VY
Sbjct: 431 -----------LL------VPASDLINKDLVKNNVSFNAKDIQIP----------VYDTF 463
Query: 205 NNPYNLCRTTGASSGG-------------EACLVSACGSVLGLGTDLGGSNRIPALYCGV 251
+ +L R S E +L G GG++ + L
Sbjct: 464 DG-SDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--GGASGLGVL---- 515
Query: 252 YGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPY 288
T +DG G ++ AG + + +D +
Sbjct: 516 ------THRN--KDGT-GVRVIVAGTLDINPDDDYGF 543
Score = 35.8 bits (82), Expect = 0.033
Identities = 82/512 (16%), Positives = 146/512 (28%), Gaps = 203/512 (39%)
Query: 3 SPKSASSNTPDQSSRRHSSKNRLTFLRTFLIFV----------------RVCFDSFI--- 43
+ A+ + P ++ L + FL +V +C F
Sbjct: 45 TEGFAADDEP-------TTPAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 44 ---NIIFSFIYK-DEAFPLPPVKNKIVLES---ATQIAKKIRNKNITSVEVVQAFIERIE 96
N I + K + VK K ++++ A +AK+ +K S A +
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----ALFRAVG 150
Query: 97 ------------Q--VNPYLNAMVD--TRYTEALEE--AKAADQKIALEEDISDKPYLGV 138
Q + Y + D Y + + +A+ L D +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-- 208
Query: 139 PFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGI---LLGNTNIPELLWSE 195
FT +GL N L L D D Y++ + I L+G ++
Sbjct: 209 -FT-------QGL-NILEWLENPSNTPDKD-YLL----SIP-ISCPLIG------VI--- 244
Query: 196 SRNMVYGQSNNPYNLCRTTG-----------ASSGGEACLVSACGSVLGLGTDLGGS--- 241
Q + + G ++G LV+A + S
Sbjct: 245 -------QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA--VAIAETDS-WESFFV 294
Query: 242 NRIPAL----YCGVYGHKLTTGGIYGR------------DGKEGK--SMLA-AGPIVKHA 282
+ A+ + GV ++ Y + EG ML+ + +
Sbjct: 295 SVRKAITVLFFIGVRCYEA-----YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 283 EDL-------LPYSKCLIL-----PDKLPAYNFDKSVDLAKLAG--GSMEGMLPAYNFDK 328
+D LP K + + N V ++G S+ G+
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAK-----NL---V----VSGPPQSLYGLNLT----- 392
Query: 329 PVDLAKLKVFYVEEPGDMKVS--PMSKDMIQAIRKCVNALKVVS---------HSEPEDL 377
L K K P + S P S+ RK LK + HS
Sbjct: 393 ---LRKAKA-----PSGLDQSRIPFSE------RK----LKFSNRFLPVASPFHS----- 429
Query: 378 SYIK--QFRLGYDVWRYWVSKEKDDFNQLTIF 407
+ + D+ + VS D Q+ ++
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDI-QIPVY 460
Score = 35.0 bits (80), Expect = 0.057
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 67 LESATQIAKKIRNKNITSVEVVQAF-IERIEQ 97
L++ T + I+ + I +E+ ++ +E +E
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 32.3 bits (73), Expect = 0.35
Identities = 62/417 (14%), Positives = 124/417 (29%), Gaps = 137/417 (32%)
Query: 9 SNTPDQSSRRHSSKNRLTFLRTFLIFVRVCFDSFINIIF-----SFIYKDEAFPLPPVKN 63
SNTPD+ +L+ + + S +I ++ + P +
Sbjct: 223 SNTPDKD---------------YLLSIPI---SC-PLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQK 123
+ L+ AT ++ + V I A D+ E+ +
Sbjct: 264 RSYLKGATGHSQGL---------VTAVAI-----------AETDSW--ESFFVSVRKAIT 301
Query: 124 IALEEDISDKPYLGV------PFTSKESTACKG-LSNTLG----LLARKG-KKADADAYI 171
+ ++GV P TS + + L N G +L+ + Y+
Sbjct: 302 VLF--------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 172 VE---RVKTAGGILLGNTNIPELLWSESRNMVYGQSNNP---YNLC---RTTGASSGGEA 222
+ + + + N +N+V S P Y L R A SG +
Sbjct: 354 NKTNSHLPAGKQVEISLVNGA-------KNLVV--SGPPQSLYGLNLTLRKAKAPSGLD- 403
Query: 223 CLVSACGSVLGLGTDLGGSNRIPALYCG---VYGHK-LTTG----GIYGRDGKEG-KSML 273
+RIP + + ++ L + L
Sbjct: 404 ------------------QSRIP--FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 274 AAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVD-- 331
+ +A+D+ ++P Y+ DL L+G E ++ PV
Sbjct: 444 VKNNVSFNAKDI-----------QIPVYDTFDGSDLRVLSGSISERIVDC-IIRLPVKWE 491
Query: 332 -LAKLKVFYVEE--PGDMK-VSPMSKDMIQA--IRKCVNALKVVSHSEPEDLSYIKQ 382
+ K ++ + PG + ++ +R V + + +D + KQ
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR--VIVAGTLDINPDDDYGF-KQ 545
Score = 30.8 bits (69), Expect = 1.1
Identities = 33/147 (22%), Positives = 47/147 (31%), Gaps = 57/147 (38%)
Query: 71 TQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTR----------YTEALEEAKAA 120
TQ A +T +E A E ++ ++ Y AL A A
Sbjct: 1732 TQPA-------LTLMEK--AAFEDLKS-----KGLIPADATFAGHSLGEYA-AL--ASLA 1774
Query: 121 DQKIALEEDISDKPYL----G------VPFTSKESTACKGLSNTLGLLA----RKGKKAD 166
D + I + G VP G SN G++A R
Sbjct: 1775 D---VM--SIESLVEVVFYRGMTMQVAVPRDEL------GRSNY-GMIAINPGRVAASFS 1822
Query: 167 ADA--YIVERVKTAGGILLG--NTNIP 189
+A Y+VERV G L+ N N+
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVE 1849
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.31
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 6/31 (19%)
Query: 279 VKHAEDLL-PYSKCLILPDKLPAYNFDKSVD 308
+K + L Y+ D PA +++
Sbjct: 22 LKKLQASLKLYA-----DDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 1.5
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 357 QAIRKCVNALKVVS-HSEPEDLSYIK 381
QA++K +LK+ + S P L+ IK
Sbjct: 20 QALKKLQASLKLYADDSAPA-LA-IK 43
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 30.6 bits (70), Expect = 0.91
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ +L ++A G A+ I + ++ GG++
Sbjct: 203 LAKSLEMIAENGPDEFYKGTIAEQ-IAQEMQKNGGLI 238
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 30.6 bits (70), Expect = 0.99
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ +L ++A G A+ I + ++ GG++
Sbjct: 203 LAKSLEMIAENGPDEFYKGTIAEQ-IAQEMQKNGGLI 238
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 30.2 bits (69), Expect = 1.2
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ T L+ KG A A + + V+ GG +
Sbjct: 199 LAKTFKLIRSKGTDAFYKGKFAKT-LSDTVQDFGGSM 234
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 29.9 bits (68), Expect = 1.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ TL + G K A+ I + +K GGI+
Sbjct: 214 LAKTLNQIKTLGAKGFYQGQVAEL-IEKDMKKNGGII 249
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 29.4 bits (65), Expect = 2.2
Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 23/180 (12%)
Query: 231 VLGLGTDLGGSNRIPALYCGVYGHK---LTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLP 287
V+ LGT + I + V G K + YG A+ + + E
Sbjct: 14 VIVLGTGITEC--ILSGLLSVDGKKVLHIDKQDHYG-------GEAASVTLSQLYEKFKQ 64
Query: 288 YSKCLILPDKLPAYNFDKSVDLAK---LAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPG 344
+ + D +VDL +A G + +L + + VD ++ YV + G
Sbjct: 65 NPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQG 124
Query: 345 DMKVSPMSKDMIQA--------IRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSK 396
+ P ++ + R+ L+ +S + +DLS + L + K
Sbjct: 125 KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYK 184
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics,
PSI, protein structure initiative; 2.03A {Thermoplasma
acidophilum} SCOP: d.153.1.6
Length = 516
Score = 29.0 bits (66), Expect = 3.0
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 149 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ + L++ +G ++ AD I+ ++ G L
Sbjct: 186 PDLAESFRLMSEEGFRSFYDGSLADI-IIAGLEGTGSPL 223
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 29.0 bits (64), Expect = 3.4
Identities = 11/58 (18%), Positives = 17/58 (29%)
Query: 281 HAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVF 338
+ L+PY +LP + LA L + L K A +
Sbjct: 749 NKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYV 806
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family,
transferase-D complex; HET: DNA MSE ADI; 1.70A
{Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB:
1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A*
1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A*
2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Length = 352
Score = 28.7 bits (65), Expect = 3.6
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 53 DEAFPLPPVKNKIVLESATQIAKKIRNK 80
DEA+ L A + +I+NK
Sbjct: 105 DEAY-LDISDKVRDYREAYNLGLEIKNK 131
>2nlz_A Cephalosporin acylase; structural genomics, protein structure
initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans}
SCOP: d.153.1.6
Length = 547
Score = 28.6 bits (65), Expect = 4.5
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 149 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
+G ++TL +A ++ AD I GG L
Sbjct: 202 QGHADTLRSIAESNGESFYRGELADQ-IHAFFDKHGGYL 239
>3ce2_A Putative peptidase; structural genomics, unknown function, P
protein structure initiative; 2.60A {Chlamydophila
abortus}
Length = 618
Score = 28.5 bits (64), Expect = 4.5
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 83 TSVEVVQAFIERIEQ-----------VNPYLNAMVDTRYTEALEEAKAADQKIALEEDIS 131
+ + A ++ I V P L ++ ++ + L A + LE+
Sbjct: 98 ITNQEGIADLKSITHLHTLFAEETSWVQPALTSLSESLIAQHLSAPCLAPYRFYLEKIFR 157
Query: 132 DKPYL 136
+
Sbjct: 158 LSIHT 162
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 28.0 bits (63), Expect = 6.2
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 272 MLAAGPIVKHAEDLLPYSKCLIL 294
ML G +++ + L ++
Sbjct: 509 MLTGGNSLEYFKWLCEDPDNSLV 531
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 28.0 bits (63), Expect = 6.3
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 272 MLAAGPIVKHAEDLLPYSKCLIL 294
M+ +G + E + ++
Sbjct: 331 MMQSGLSRELFESWCTDKRNGVI 353
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 28.1 bits (63), Expect = 6.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 272 MLAAGPIVKHAEDLLPYSKCLIL 294
ML GP V++ + L P K I+
Sbjct: 524 MLVGGPSVEYFKQLAPDPKNSII 546
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 28.0 bits (63), Expect = 6.7
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 272 MLAAGPIVKHAEDLLPYSKCLIL 294
M+ GP++++ + + ++
Sbjct: 513 MMNGGPVMEYFKAFAEDPRNTLV 535
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 27.8 bits (63), Expect = 7.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 272 MLAAGPIVKHAEDLLPYSKCLIL 294
MLA G I+ H + L + ++
Sbjct: 315 MLAGGRILHHLKHGLSDPRNALV 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,195,517
Number of extensions: 378070
Number of successful extensions: 964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 928
Number of HSP's successfully gapped: 42
Length of query: 407
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 311
Effective length of database: 4,021,377
Effective search space: 1250648247
Effective search space used: 1250648247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)