RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5206
(407 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 171 bits (434), Expect = 4e-49
Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 24/330 (7%)
Query: 65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 124
I ES + I++K I +VV+ + IE+ +P + + + A+++A+ D+
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 125 ALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLG 184
A +D D G+P K++ GL T +G ++ ++E++ +L+G
Sbjct: 63 A--KDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIG 120
Query: 185 NTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 243
N+ E + + ++ NP++ G SSGG A V+A L LG+D GGS R
Sbjct: 121 KLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIR 180
Query: 244 IPALYCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAY 301
PA YCGV G K T G + R G S+ GP+ ++ +D ++L A
Sbjct: 181 QPAAYCGVVGMKPTYGRV-SRFGLVAFASSLDQIGPLTRNVKDN-----AIVLEAISGAD 234
Query: 302 NFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRK 361
D + S + + D+ LKV +E V+ D+ +A++
Sbjct: 235 VNDST---------SAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVAD---DVKEAVQN 282
Query: 362 CVNALKVVSHS-EPEDLSYIKQFRLGYDVW 390
V LK + E L K Y V
Sbjct: 283 AVETLKSLGAVVEEVSLPNTKFGIPSYYVI 312
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 148 bits (373), Expect = 1e-40
Identities = 74/325 (22%), Positives = 134/325 (41%), Gaps = 38/325 (11%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
I + ++ ++ Q +E I++++P++ A + R ++E+
Sbjct: 7 RKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK----------- 55
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
+ G+P K++ G+ T + ++ DA +V+++K AG +++G N+
Sbjct: 56 ----GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANL 111
Query: 189 PELLWSES-RNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
E S + + NP++L R G SSGG A VSA V LG+D GGS R PA
Sbjct: 112 DEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPAS 171
Query: 248 YCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDK 305
CGV G+K T G+ R G S+ GPI K D + + D+ A ++
Sbjct: 172 LCGVVGYK-PTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNR 230
Query: 306 SVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNA 365
VD + + ++ +K EE + + + + + +
Sbjct: 231 KVD---------------FLSEIEEGVSGMKFAVPEEIYEHDIEE---GVSERFEEALKL 272
Query: 366 LKVVSHS-EPEDLSYIKQFRLGYDV 389
L+ + E + +IK Y V
Sbjct: 273 LERLGAKVERVKIPHIKYSVATYYV 297
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 128 bits (321), Expect = 4e-33
Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 17/278 (6%)
Query: 57 PLPPVKNKIVLE-SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALE 115
P + ++ +L Q+ +K+++ ++ V ++ + +VN N + +
Sbjct: 29 QNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ 88
Query: 116 EAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERV 175
++A Q GVP + KE + KG +TLGL +G +++D +V+ +
Sbjct: 89 LSQAPRQ----------GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVL 138
Query: 176 KTAGGILLGNTNIPELLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGL 234
K G + +TN+P+ + S N ++GQ+ NP+ ++ G SSGGE L+ + GS LGL
Sbjct: 139 KLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGL 198
Query: 235 GTDLGGSNRIPALYCGVYGHKLT-----TGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYS 289
GTD+GGS R P+ +CG+ G K T G+ G + L+ GP+ + E L
Sbjct: 199 GTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCL 258
Query: 290 KCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFD 327
K L+ + + S + Y
Sbjct: 259 KALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYET 296
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 121 bits (303), Expect = 6e-31
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 13/200 (6%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIE---QVNPYLNAMVDTRYTEALEEAKAADQKIA 125
+ ++ + S + QA+++RI + P L A+++ +AL+EA D++
Sbjct: 8 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERR 66
Query: 126 LEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGN 185
P G+P K++ ++ + G LA + DAY+V R++ AG ++LG
Sbjct: 67 DGRLRG--PLHGIPLLLKDNINAAPMATSAGSLALQ-GFRPDDAYLVRRLRDAGAVVLGK 123
Query: 186 TNIPELL------WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLG 239
TN+ E + GQ+ NPY + + SS G A V+A + + +GT+
Sbjct: 124 TNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETD 183
Query: 240 GSNRIPALYCGVYGHKLTTG 259
GS PA GV G K T G
Sbjct: 184 GSIVCPAAINGVVGLKPTVG 203
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 94.0 bits (232), Expect = 1e-21
Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 20/189 (10%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S + ++I ++ + IE ++A + + A+A
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHA-----FVRHDKSARAQA------- 50
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
P G+ K+ + +G +G + +DA +V +K A G T I
Sbjct: 51 ---SGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRA-----GATII 102
Query: 189 PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 248
+ + + + NP+N + G SS G A V A L LGT GGS PA Y
Sbjct: 103 GKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAY 162
Query: 249 CGVYGHKLT 257
CG K +
Sbjct: 163 CGTAAIKPS 171
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 28.1 bits (62), Expect = 1.00
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 62 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTE 112
+ AT IA +IR K+ + + +N A+ + +
Sbjct: 18 SGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 68
>d2ebfx1 a.296.1.1 (X:575-874) Dermonecrotic toxin, ToxA
{Pasteurella multocida [TaxId: 747]}
Length = 300
Score = 27.2 bits (60), Expect = 3.5
Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 33/162 (20%)
Query: 50 IYKDEAFPLPPVKNKIVLESATQIAKKIR--NKNITSVEVVQAFIERIEQVNPYLNAMVD 107
+ V K + ES +I K++ + + E E +E ++ Y +
Sbjct: 17 WTPEVLKARASVIGKPIGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPS 76
Query: 108 TRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADA 167
+ A E L + YL K+ + + KG A
Sbjct: 77 SERLNAFRE---------LRTQLEKALYLPEMEALKKQ---------ILQIPNKGSGAAR 118
Query: 168 DAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSN-NPY 208
+ AG SES + + +
Sbjct: 119 FLLRTAMNEMAGK------------TSESTADLIRFALQDTV 148
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 26.5 bits (58), Expect = 3.6
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 62 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN 99
K + AT++A+++R K+ + I +N
Sbjct: 21 TGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLN 58
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 26.7 bits (58), Expect = 6.0
Identities = 18/87 (20%), Positives = 28/87 (32%)
Query: 46 IFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAM 105
I S + K E P PP+ V + + E++ F + YL
Sbjct: 222 ISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQ 281
Query: 106 VDTRYTEALEEAKAADQKIALEEDISD 132
D R + + EED+ D
Sbjct: 282 GDERMHLPSPTDSNFYRALMDEEDMDD 308
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,495,658
Number of extensions: 70157
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 9
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)