BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy521
(173 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156551159|ref|XP_001604309.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nasonia vitripennis]
Length = 305
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 107/138 (77%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKV+ML++LEPDRS+TGG WYQDQDFE EFVDVLNQQCYRFL+ KRE T N NGP+
Sbjct: 143 ASKKKVFMLYNLEPDRSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEQKRESTKNYINGPI 202
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ A+ KEV KFI+DLGISKV+LS ED+ IL TL++DGK+E+ + DG+ +YRA+
Sbjct: 203 AEKNATFASSKEVWKFISDLGISKVKLSVEDLEMILNTLIYDGKVERTVSSDGSSLYRAI 262
Query: 155 SPYFAVTGLSTSPCGVCP 172
+P GL S CGVCP
Sbjct: 263 NPLLNSPGLVQSSCGVCP 280
>gi|125775055|ref|XP_001358779.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|195145010|ref|XP_002013489.1| GL24167 [Drosophila persimilis]
gi|54638520|gb|EAL27922.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|194102432|gb|EDW24475.1| GL24167 [Drosophila persimilis]
Length = 293
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 108/142 (76%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPDRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE
Sbjct: 128 KSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRENAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GPL ++++C T +V KFI+DLGISKV L E+D+ TIL+T+++DG E+I DG+ +
Sbjct: 188 DGPLALKQMSCCTVSDVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERIMQQDGSYV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ TGL PCG+CP
Sbjct: 248 YRAVNLPLPPTGLVQMPCGICP 269
>gi|195445244|ref|XP_002070239.1| GK11949 [Drosophila willistoni]
gi|194166324|gb|EDW81225.1| GK11949 [Drosophila willistoni]
Length = 295
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPDR++TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE
Sbjct: 130 KSVNASKKKVYMLYNLEPDRTVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRENAEKKR 189
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPLV + ++C T EV KFI+DLG+SKV L E+D+ TIL+T+++DG E++ DG+ +
Sbjct: 190 EGPLVLREMSCCTVNEVHKFISDLGVSKVNLDEDDLETILKTVVYDGNAERVMKSDGSYV 249
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ TGL PCG+CP
Sbjct: 250 YRAVNSPLPPTGLIQMPCGICP 271
>gi|312377801|gb|EFR24541.1| hypothetical protein AND_10775 [Anopheles darlingi]
Length = 318
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 107/139 (76%)
Query: 34 EASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP 93
+ASKKKVYML++LEPDRS+TGG WYQDQDFE EFVDVLNQQC RFL++KRE N+ GP
Sbjct: 156 QASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKRETARNSGEGP 215
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
L Q+L+ + +V +FI+DLGISK+ L E+D+ TIL+T+++DGK E+I N+DG +YRA
Sbjct: 216 LAVQKLSVCSVADVHRFISDLGISKISLDEDDLETILKTVVYDGKAERIANMDGGFLYRA 275
Query: 154 VSPYFAVTGLSTSPCGVCP 172
+ GL PCG+CP
Sbjct: 276 IESPLEPPGLVQMPCGICP 294
>gi|195390233|ref|XP_002053773.1| GJ24071 [Drosophila virilis]
gi|194151859|gb|EDW67293.1| GJ24071 [Drosophila virilis]
Length = 293
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML+++E DRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE
Sbjct: 128 KSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKREGAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GPL ++++C T KEV KFI+DLGISKV L E+D+ TIL+T+++DG E+I DGT +
Sbjct: 188 DGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGSAERILQSDGTYV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ GL PCG+CP
Sbjct: 248 YRAVNLPLPAPGLVQMPCGICP 269
>gi|195053568|ref|XP_001993698.1| GH19703 [Drosophila grimshawi]
gi|193895568|gb|EDV94434.1| GH19703 [Drosophila grimshawi]
Length = 294
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML+++E DRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE
Sbjct: 129 KSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKREGAEKKR 188
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GPL ++++C T KEV KFI+DLGISKV L E+D+ TIL+T+++DG E+I DGT +
Sbjct: 189 DGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERILQSDGTYV 248
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ GL PCG+CP
Sbjct: 249 YRAVNLPLPAPGLVQMPCGICP 270
>gi|332027979|gb|EGI68030.1| DNA-directed RNA polymerase III subunit RPC6 [Acromyrmex
echinatior]
Length = 306
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/140 (60%), Positives = 104/140 (74%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNG 92
EASKKKVYML++LEP S+TGG WYQDQDFE EFVDVLNQQCYRFL+ KREKT N G
Sbjct: 143 VEASKKKVYMLYNLEPAESVTGGAWYQDQDFETEFVDVLNQQCYRFLEQKREKTKNCNTG 202
Query: 93 PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152
P+ A+ + A+ K+V K+I+DLG+SKV+L+ DI IL TL+ DGKIEQ DG +YR
Sbjct: 203 PIAARNMTYASSKDVLKYISDLGVSKVKLTVTDIEVILNTLICDGKIEQTLTNDGNHLYR 262
Query: 153 AVSPYFAVTGLSTSPCGVCP 172
A+ P GL +PCG+CP
Sbjct: 263 AIQPLLNPMGLVKTPCGLCP 282
>gi|195112652|ref|XP_002000886.1| GI22278 [Drosophila mojavensis]
gi|193917480|gb|EDW16347.1| GI22278 [Drosophila mojavensis]
Length = 293
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 106/142 (74%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LE DRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE
Sbjct: 128 KSVNASKKKVYMLYNLEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRESAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GPL ++++C T KEV KFI+DLGISKV L E+D+ TIL+T+++DG E+I DGT +
Sbjct: 188 DGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERILQSDGTYV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ G PCG+CP
Sbjct: 248 YRAVNLPLPAPGFVQMPCGICP 269
>gi|383863773|ref|XP_003707354.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Megachile rotundata]
Length = 310
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 109/138 (78%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ KRE+ ++ GP+
Sbjct: 149 ASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEKKREQINSSKGGPI 208
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+A+ + A+ KEV KFI+DLGISKV+LS +D+ IL TL++DGK+E+ + DG+++YRAV
Sbjct: 209 IARNVTFASSKEVWKFISDLGISKVKLSVDDLEMILNTLVYDGKVERTLSGDGSNLYRAV 268
Query: 155 SPYFAVTGLSTSPCGVCP 172
P GL S CGVCP
Sbjct: 269 EPLLNPPGLIKSTCGVCP 286
>gi|307174837|gb|EFN65131.1| DNA-directed RNA polymerase III subunit RPC6 [Camponotus
floridanus]
Length = 311
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 108/138 (78%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ K+EKT N GP+
Sbjct: 150 ASKKKVYMLYNLEPDESITGGAWYQDQDFETEFVDVLNQQCYRFLEQKKEKTKNCNIGPV 209
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
A+ + A+ K+V KFI+DLGISKV+LS +I IL TL++DGK+E+I DG+++YRA+
Sbjct: 210 AARNMTFASSKDVWKFISDLGISKVKLSVTNIEMILNTLVYDGKVERILAGDGSNLYRAI 269
Query: 155 SPYFAVTGLSTSPCGVCP 172
P GL +PCG+CP
Sbjct: 270 EPLVISPGLIRTPCGLCP 287
>gi|194743126|ref|XP_001954051.1| GF16937 [Drosophila ananassae]
gi|190627088|gb|EDV42612.1| GF16937 [Drosophila ananassae]
Length = 293
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDGAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL ++++C T EV KFI+DLGISKV L+E D+ TIL+T+++DG E++ DG+ +
Sbjct: 188 EGPLAFKQMSCCTVNEVHKFISDLGISKVNLAEADLETILKTVVYDGNAERVRLQDGSFV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ A TGL PCG+CP
Sbjct: 248 YRAVNSPLAPTGLVQMPCGICP 269
>gi|195330977|ref|XP_002032179.1| GM23658 [Drosophila sechellia]
gi|194121122|gb|EDW43165.1| GM23658 [Drosophila sechellia]
Length = 293
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL ++++C T EV+KFI+DLGISKV L+E D+ TIL+T+++DG E++ DG+ +
Sbjct: 188 EGPLAFKQMSCCTVHEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ TGL PCG+CP
Sbjct: 248 YRAVNAPLPPTGLVQMPCGICP 269
>gi|24648960|ref|NP_651029.1| CG5380, isoform A [Drosophila melanogaster]
gi|386766236|ref|NP_001247237.1| CG5380, isoform B [Drosophila melanogaster]
gi|20139853|sp|Q9VD25.1|RPC6_DROME RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=DNA-directed RNA polymerase III subunit F;
Short=RNA polymerase III subunit C6
gi|7300836|gb|AAF55978.1| CG5380, isoform A [Drosophila melanogaster]
gi|21430846|gb|AAM51101.1| SD19581p [Drosophila melanogaster]
gi|220950288|gb|ACL87687.1| CG5380-PA [synthetic construct]
gi|220959240|gb|ACL92163.1| CG5380-PA [synthetic construct]
gi|295293321|gb|ADF87926.1| MIP22258p [Drosophila melanogaster]
gi|383292866|gb|AFH06555.1| CG5380, isoform B [Drosophila melanogaster]
Length = 293
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL ++++C T EV+KFI+DLGISKV L+E D+ TIL+T+++DG E++ DG+ +
Sbjct: 188 EGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ TGL PCG+CP
Sbjct: 248 YRAVNAPLPPTGLVQMPCGICP 269
>gi|194911143|ref|XP_001982296.1| GG12523 [Drosophila erecta]
gi|190656934|gb|EDV54166.1| GG12523 [Drosophila erecta]
Length = 293
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL ++++C T EV+KFI+DLGISKV L+E D+ TIL+T+++DG E++ DG+ +
Sbjct: 188 EGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ TGL PCG+CP
Sbjct: 248 YRAVNSPLPPTGLVQMPCGICP 269
>gi|195502543|ref|XP_002098270.1| GE24046 [Drosophila yakuba]
gi|194184371|gb|EDW97982.1| GE24046 [Drosophila yakuba]
Length = 293
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL ++++C T EV+KFI+DLGISKV L+E D+ TIL+T+++DG E++ DG+ +
Sbjct: 188 EGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ TGL PCG+CP
Sbjct: 248 YRAVNSPLPPTGLVQMPCGICP 269
>gi|350410921|ref|XP_003489178.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus impatiens]
Length = 311
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 108/138 (78%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ KRE+ + GP+
Sbjct: 150 ASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLENKREQMNSCRGGPI 209
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+A+ + A+ KEV KFI+DLGISKV+LS ED+ IL TL++DGK+E+ + DG+ +YRAV
Sbjct: 210 MARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGKVERTLSGDGSTLYRAV 269
Query: 155 SPYFAVTGLSTSPCGVCP 172
P + GL S CG+CP
Sbjct: 270 EPLLSPPGLIKSTCGICP 287
>gi|340714612|ref|XP_003395820.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus terrestris]
Length = 311
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 107/138 (77%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ KRE+ + GP+
Sbjct: 150 ASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLENKREQMNSCRGGPI 209
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+A+ + A+ KEV KFI+DLGISKV+LS ED+ IL TL++DGK+E+ + DG +YRAV
Sbjct: 210 MARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGKVERTLSGDGNTLYRAV 269
Query: 155 SPYFAVTGLSTSPCGVCP 172
P + GL S CG+CP
Sbjct: 270 EPLLSPPGLIKSTCGICP 287
>gi|170064626|ref|XP_001867603.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
gi|167881952|gb|EDS45335.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
Length = 305
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 106/142 (74%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPDRS+TGG WYQDQDFE EFVDVLNQQC RFL++K+E
Sbjct: 140 KSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKKEMAKECR 199
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GPL Q+LA + +V KFI+DLGISK+ L E+D+ TIL+T+++DGK E + ++G ++
Sbjct: 200 DGPLAVQKLAYCSVADVHKFISDLGISKISLDEDDLETILKTVVYDGKAESMPTVEGKNL 259
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
Y+AV A GL PCG+CP
Sbjct: 260 YKAVEAPLASPGLVQMPCGICP 281
>gi|66509068|ref|XP_624984.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Apis
mellifera]
Length = 311
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 106/138 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ K+E+ + GP+
Sbjct: 150 ASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEKKKEQMNSCGGGPI 209
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+A+ + A+ KEV KFI+DLGISKV+LS ED+ IL TL++DGK+E+ + DG +YRAV
Sbjct: 210 MARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGKVERTLSGDGNTLYRAV 269
Query: 155 SPYFAVTGLSTSPCGVCP 172
P GL S CGVCP
Sbjct: 270 EPLLNPPGLIKSTCGVCP 287
>gi|380025937|ref|XP_003696719.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Apis florea]
Length = 311
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 105/138 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ K+ K + GP+
Sbjct: 150 ASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEKKKSKXNSCGGGPI 209
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+A+ + A+ KEV KFI+DLGISKV+LS ED+ IL TL++DGK+E+ + DG +YRAV
Sbjct: 210 MARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGKVERTLSGDGNTLYRAV 269
Query: 155 SPYFAVTGLSTSPCGVCP 172
P GL S CGVCP
Sbjct: 270 EPLLNPPGLIKSTCGVCP 287
>gi|322791297|gb|EFZ15814.1| hypothetical protein SINV_06955 [Solenopsis invicta]
Length = 306
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 106/138 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ K+E+ N GP+
Sbjct: 145 ASKKKVYMLYNLEPDESVTGGAWYQDQDFETEFVDVLNQQCYRFLEQKKERVKNCNAGPI 204
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
A+ + A+ KEV KFI+DLGISKV+LS ++ IL TL++DGK+E+ DG+++Y+A+
Sbjct: 205 AARNMTFASSKEVWKFISDLGISKVKLSITNMEMILNTLVYDGKVERTLAGDGSNLYKAI 264
Query: 155 SPYFAVTGLSTSPCGVCP 172
P GL +PCG+CP
Sbjct: 265 QPLLNSPGLIRTPCGLCP 282
>gi|289740045|gb|ADD18770.1| putative E3 ubiquitin ligase [Glossina morsitans morsitans]
Length = 294
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 105/142 (73%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPDRS++GG WYQDQDFE EFVDVLNQQC RFLQ KR+K
Sbjct: 129 KSVNASKKKVYMLYNLEPDRSVSGGAWYQDQDFEAEFVDVLNQQCLRFLQEKRKKAEERR 188
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GPL ++L+C + KEV K+I+D+GISKV L E+D+ TIL+T+++DGK E+I DG +
Sbjct: 189 DGPLAVRQLSCCSVKEVHKYISDVGISKVNLDEDDLETILKTVVYDGKAERILVSDGAYV 248
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRA+ GL PCG CP
Sbjct: 249 YRAIESPLPPAGLIQMPCGRCP 270
>gi|118792885|ref|XP_320558.3| AGAP011973-PA [Anopheles gambiae str. PEST]
gi|116117113|gb|EAA00356.3| AGAP011973-PA [Anopheles gambiae str. PEST]
Length = 295
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 104/142 (73%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPDRS+TGG WYQDQDFE EFVDVLNQQC RFL+ KRE +
Sbjct: 130 KSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRQKREVAKGSG 189
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL Q+L+ + +V +FI+DLGISK+ L E+D+ TIL+T+++DGK E++ I G +
Sbjct: 190 EGPLAVQKLSECSVADVHRFISDLGISKISLDEDDLETILKTVVYDGKAERVAQISGGFL 249
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRA+ A GL PCG+CP
Sbjct: 250 YRAIETPIAAPGLVQMPCGICP 271
>gi|157138209|ref|XP_001664177.1| DNA-directed RNA polymerase III, 34kD-subunit, putative [Aedes
aegypti]
gi|108880662|gb|EAT44887.1| AAEL003786-PA [Aedes aegypti]
Length = 328
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 104/142 (73%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPDRS+TGG WYQDQDFE EFVDVLNQQC RFL++KRE
Sbjct: 163 KSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKRESAKECR 222
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GPL Q+L+ + +V KFI+DLGISK+ L E+D+ TIL+T+++DGK E I +G +
Sbjct: 223 DGPLAVQKLSYCSVGDVHKFISDLGISKISLDEDDLETILKTVVYDGKAESIPTAEGKYL 282
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
Y+A+ + GL PCG+CP
Sbjct: 283 YKAIEAPLSSPGLVQMPCGICP 304
>gi|242022647|ref|XP_002431750.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
gi|212517075|gb|EEB19012.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
Length = 315
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 106/142 (74%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD+SLTGG WY DQDFE EFV VL+QQCYRFLQ K+EK +
Sbjct: 149 KSVSASKKKVYMLYNLEPDKSLTGGAWYSDQDFEAEFVGVLSQQCYRFLQQKQEKLKDFN 208
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
P + ++ A+ KEV KFI++LGIS+V LS EDI TIL+T+++DGK+E+ ++D T +
Sbjct: 209 GSPRQWKNMSYASSKEVWKFISELGISRVMLSVEDIETILDTIVYDGKVEKAVDVDLTKI 268
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV P G+ +PCGVCP
Sbjct: 269 YRAVEPLLPAPGIVQTPCGVCP 290
>gi|357612377|gb|EHJ67947.1| putative DNA-directed RNA polymerase III 39 kDa polypeptide [Danaus
plexippus]
Length = 269
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 101/138 (73%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYMLF+LEPDRS++GG WYQDQDFE EFVD+LN+QC RFLQ + +K NN GP+
Sbjct: 107 ASKKKVYMLFNLEPDRSVSGGAWYQDQDFESEFVDILNRQCLRFLQQRADKIKNNPRGPI 166
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
V + + AT EV+K+ITDLGISKV+L ED+ TIL TL++DGK E DG +YRA+
Sbjct: 167 VGRTQSYATAAEVQKYITDLGISKVKLEVEDVITILNTLVYDGKAESNVYPDGNRVYRAI 226
Query: 155 SPYFAVTGLSTSPCGVCP 172
GL PCGVCP
Sbjct: 227 ESLLPPPGLVQVPCGVCP 244
>gi|389612872|dbj|BAM19835.1| DNA-directed RNA polymerase III, 34kD-subunit, partial [Papilio
xuthus]
Length = 286
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQ 61
S IA+ + +L +LE + + ASKKKVYML++LEPDRS++GG WYQDQ
Sbjct: 108 SNIANTQLTKVLKNLESKKVIKAVKC-----VNASKKKVYMLYNLEPDRSISGGAWYQDQ 162
Query: 62 DFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVEL 121
DFE EFVD+LN+QC RFLQ + +K NN GP+V + + A+ EV+K+ITDLGIS V+L
Sbjct: 163 DFESEFVDILNRQCLRFLQQRADKIKNNPKGPVVGRTQSFASAVEVQKYITDLGISNVKL 222
Query: 122 SEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
ED+ TIL TL++DGK E DGT +YRA+ GL PCGVCP
Sbjct: 223 EVEDVITILNTLVYDGKAESSVLPDGTKVYRAIESLIPPPGLVQVPCGVCP 273
>gi|351715903|gb|EHB18822.1| DNA-directed RNA polymerase III subunit RPC6 [Heterocephalus
glaber]
Length = 316
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 106/148 (71%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP A TGL SPCG+CP
Sbjct: 264 DGHMKLYRAVSPIIAPTGLVRSPCGLCP 291
>gi|449275236|gb|EMC84159.1| DNA-directed RNA polymerase III subunit RPC6 [Columba livia]
Length = 314
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 202 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 262 DGQMKLYRAVSPLIQPTGLVRTPCGLCP 289
>gi|344280110|ref|XP_003411828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Loxodonta africana]
Length = 316
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
>gi|426240919|ref|XP_004014341.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ovis
aries]
gi|296481393|tpg|DAA23508.1| TPA: DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|440911603|gb|ELR61252.1| DNA-directed RNA polymerase III subunit RPC6 [Bos grunniens mutus]
Length = 316
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
>gi|313661432|ref|NP_001186330.1| DNA-directed RNA polymerase III subunit RPC6 [Gallus gallus]
Length = 314
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 202 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 262 DGQMKLYRAVSPLIQPTGLVRTPCGLCP 289
>gi|326914992|ref|XP_003203806.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Meleagris gallopavo]
Length = 314
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 202 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 262 DGQMKLYRAVSPLIQPTGLVRTPCGLCP 289
>gi|224047392|ref|XP_002198916.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Taeniopygia guttata]
Length = 314
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQNPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 202 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 262 DGQMRLYRAVSPLIQPTGLVRTPCGLCP 289
>gi|348581574|ref|XP_003476552.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cavia
porcellus]
Length = 316
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPILPPTGLVRAPCGLCP 291
>gi|126303656|ref|XP_001374149.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Monodelphis domestica]
Length = 316
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIQPTGLVRAPCGLCP 291
>gi|386781237|ref|NP_001247594.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|402883312|ref|XP_003905166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Papio
anubis]
gi|355563390|gb|EHH19952.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|355784723|gb|EHH65574.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca fascicularis]
gi|380783835|gb|AFE63793.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|383410145|gb|AFH28286.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
Length = 316
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
>gi|291388976|ref|XP_002710999.1| PREDICTED: DNA-directed RNA polymerase III 39 kDa polypeptide F
[Oryctolagus cuniculus]
Length = 316
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
>gi|84000271|ref|NP_001033237.1| DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|110816413|sp|Q2T9S3.1|RPC6_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|83405748|gb|AAI11293.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Bos
taurus]
Length = 316
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
>gi|395507808|ref|XP_003758211.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Sarcophilus harrisii]
Length = 255
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 83 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 142
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 143 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 202
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 203 DGHMKLYRAVSPIIQPTGLVRAPCGLCP 230
>gi|355712768|gb|AES04459.1| polymerase III polypeptide F, 39 kDa [Mustela putorius furo]
Length = 298
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 151 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 210
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 211 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 270
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 271 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 298
>gi|350594676|ref|XP_003483946.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Sus scrofa]
Length = 316
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P + TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIISPTGLVRAPCGLCP 291
>gi|350594678|ref|XP_003483947.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Sus scrofa]
Length = 323
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 151 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPV 210
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 211 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 270
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P + TGL +PCG+CP
Sbjct: 271 DGHMKLYRAVNPIISPTGLVRAPCGLCP 298
>gi|354468114|ref|XP_003496512.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cricetulus griseus]
Length = 316
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPILPPTGLVRAPCGLCP 291
>gi|301780510|ref|XP_002925671.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Ailuropoda melanoleuca]
gi|410954415|ref|XP_003983860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Felis
catus]
Length = 316
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|345790127|ref|XP_857138.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Canis lupus familiaris]
Length = 316
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|281352669|gb|EFB28253.1| hypothetical protein PANDA_015203 [Ailuropoda melanoleuca]
Length = 296
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 124 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 183
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 184 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 243
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 244 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 271
>gi|49618979|gb|AAT68074.1| RNA polymerase III 39kDa subunit [Danio rerio]
Length = 314
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARDSKQSPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS EDI TIL TL+FDGK+E + ++
Sbjct: 202 VQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+P TGL +PCG+CP
Sbjct: 262 DGQMKLYRGVNPIIQPTGLVKTPCGLCP 289
>gi|296200276|ref|XP_002747521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Callithrix
jacchus]
gi|403283636|ref|XP_003933219.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Saimiri
boliviensis boliviensis]
Length = 316
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|431894136|gb|ELK03936.1| DNA-directed RNA polymerase III subunit RPC6 [Pteropus alecto]
Length = 316
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIITAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|345329112|ref|XP_001515545.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Ornithorhynchus anatinus]
Length = 316
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIQPTGLVRAPCGLCP 291
>gi|417398858|gb|JAA46462.1| Putative rna polymerase iii subunit c34 [Desmodus rotundus]
Length = 316
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|42542458|gb|AAH66497.1| Polr3f protein [Danio rerio]
Length = 314
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARDSKQSPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS EDI TIL TL+FDGK+E + ++
Sbjct: 202 VQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+P TGL +PCG+CP
Sbjct: 262 DGQMKLYRGVNPIIQPTGLVKTPCGLCP 289
>gi|114681157|ref|XP_001141875.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan troglodytes]
gi|395751982|ref|XP_003779338.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pongo abelii]
gi|397478658|ref|XP_003810659.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan paniscus]
gi|426391057|ref|XP_004061903.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Gorilla gorilla gorilla]
gi|116284007|gb|AAH16761.1| POLR3F protein [Homo sapiens]
gi|119630646|gb|EAX10241.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_c [Homo sapiens]
Length = 275
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 103 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 162
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 163 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 222
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 223 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 250
>gi|194224116|ref|XP_001490686.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Equus caballus]
Length = 316
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|33598952|ref|NP_006457.2| DNA-directed RNA polymerase III subunit RPC6 [Homo sapiens]
gi|297706431|ref|XP_002830042.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pongo abelii]
gi|332238168|ref|XP_003268274.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Nomascus
leucogenys]
gi|332858027|ref|XP_003316891.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Pan
troglodytes]
gi|397478656|ref|XP_003810658.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pan paniscus]
gi|426391055|ref|XP_004061902.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Gorilla gorilla gorilla]
gi|20139728|sp|Q9H1D9.1|RPC6_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F; AltName:
Full=RNA polymerase III 39 kDa subunit; Short=RPC39
gi|15214899|gb|AAH12588.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Homo
sapiens]
gi|119630645|gb|EAX10240.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_b [Homo sapiens]
gi|123984551|gb|ABM83621.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|123999175|gb|ABM87168.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|158255220|dbj|BAF83581.1| unnamed protein product [Homo sapiens]
gi|208967094|dbj|BAG73561.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|410211180|gb|JAA02809.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410261662|gb|JAA18797.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410293744|gb|JAA25472.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410330073|gb|JAA33983.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
Length = 316
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|62898157|dbj|BAD97018.1| DNA-directed RNA polymerase III 39 kDa polypeptide F variant [Homo
sapiens]
Length = 316
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|307207698|gb|EFN85335.1| DNA-directed RNA polymerase III subunit RPC6 [Harpegnathos
saltator]
Length = 331
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 98/142 (69%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML+ LEPDRS+TGG WYQDQDFE EFVD+L Q CY +L K + N
Sbjct: 160 KSVAASKKKVYMLYSLEPDRSVTGGAWYQDQDFETEFVDILTQSCYTYLNAKATEAKNCK 219
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+GP+V + ++ + K+V K+IT G+SKV LS EDI +L L++DGKIE+ +G M
Sbjct: 220 HGPIVTRNMSFVSSKDVHKYITHSGVSKVVLSVEDIEMLLNALVYDGKIEKTATEEGNFM 279
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRA+ P + GL +PCG+CP
Sbjct: 280 YRAIQPLLSSPGLIKAPCGICP 301
>gi|335775487|gb|AEH58588.1| DNA-directed RNA polymerase III subunit RPC-like protein [Equus
caballus]
Length = 230
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 58 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 117
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 118 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 177
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 178 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 205
>gi|327270311|ref|XP_003219933.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Anolis carolinensis]
Length = 310
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 138 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAEAARDSKQNPM 197
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI---------NNI 145
+ + + A+ EV K+I++LG+SKVELS EDI TIL TL++DGK+E ++
Sbjct: 198 IQRNSSFASSHEVWKYISELGVSKVELSMEDIETILNTLIYDGKVEMTIIAAKEATAGSV 257
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL PCG+CP
Sbjct: 258 DGRMKLYRAVNPIIQPTGLIRVPCGLCP 285
>gi|41055399|ref|NP_957481.1| DNA-directed RNA polymerase III subunit RPC6 [Danio rerio]
gi|30353810|gb|AAH51782.1| Polymerase (RNA) III (DNA directed) polypeptide F [Danio rerio]
Length = 314
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 104/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+ LNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFKFLQSKAETARDSKQSPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS EDI TIL TL+FDGK+E + ++
Sbjct: 202 VQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+P TGL +PCG+CP
Sbjct: 262 DGQMKLYRGVNPIIQPTGLVKTPCGLCP 289
>gi|27754160|ref|NP_084039.2| DNA-directed RNA polymerase III subunit RPC6 [Mus musculus]
gi|20139517|sp|Q921X6.1|RPC6_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|14318737|gb|AAH09159.1| Polymerase (RNA) III (DNA directed) polypeptide F [Mus musculus]
gi|26331194|dbj|BAC29327.1| unnamed protein product [Mus musculus]
gi|26345468|dbj|BAC36385.1| unnamed protein product [Mus musculus]
gi|74194833|dbj|BAE26008.1| unnamed protein product [Mus musculus]
gi|126035615|gb|ABN72532.1| DNA-directed RNA polymerase III polypeptide F [Mus spretus]
gi|148696514|gb|EDL28461.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_a
[Mus musculus]
Length = 316
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TG+ +PCG+CP
Sbjct: 264 DGHMKLYRAVNPILPPTGVVRAPCGLCP 291
>gi|26325236|dbj|BAC26372.1| unnamed protein product [Mus musculus]
Length = 316
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TG+ +PCG+CP
Sbjct: 264 DGHMKLYRAVNPILPPTGVVRAPCGLCP 291
>gi|387915870|gb|AFK11544.1| DNA-directed RNA polymerase III subunit RPC6 [Callorhinchus milii]
Length = 314
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAEVARESKQSPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE---------QINNI 145
V + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 202 VQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEVTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG ++RAV+P TGL +PCG+CP
Sbjct: 262 DGQMKLFRAVNPIIQPTGLVRTPCGMCP 289
>gi|157821329|ref|NP_001101254.1| DNA-directed RNA polymerase III subunit RPC6 [Rattus norvegicus]
gi|149041225|gb|EDL95158.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 371
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 199 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 258
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK++ + ++
Sbjct: 259 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVDMTIIAAKEGTVGSV 318
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 319 DGHMKLYRAVNPILPPTGLVRAPCGLCP 346
>gi|395851941|ref|XP_003798506.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Otolemur
garnettii]
Length = 316
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 104/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++++PDRS+TGG WY D DFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNMQPDRSVTGGAWYSDHDFESEFVEVLNQQCFKFLQTKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>gi|45361485|ref|NP_989319.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
gi|39794390|gb|AAH64209.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
Length = 314
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 104/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAEAARDSKQNPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 202 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+P GL +PCG+CP
Sbjct: 262 DGQMKLYRGVNPITQPAGLVRTPCGLCP 289
>gi|332372876|gb|AEE61580.1| unknown [Dendroctonus ponderosae]
Length = 305
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 98/137 (71%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYMLFDL+PD S+TGG WYQDQDFE EFVDVLNQQC+R+L + E GPL
Sbjct: 142 ASKKKVYMLFDLDPDSSVTGGAWYQDQDFESEFVDVLNQQCHRYLVQRLEDAVKQGGGPL 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ + + A EV+KFI+DLGISKV LS DI +IL T++ D E++ +GT +Y+AV
Sbjct: 202 MVRNRSYAASSEVQKFISDLGISKVSLSIADIESILYTVVLDNNAERVAAANGTFLYKAV 261
Query: 155 SPYFAVTGLSTSPCGVC 171
+ + AV GL + CGVC
Sbjct: 262 NKFLAVPGLVKTTCGVC 278
>gi|410917566|ref|XP_003972257.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Takifugu rubripes]
Length = 316
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKHSPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS +DI TIL TL++DGK+E + ++
Sbjct: 204 VQRNSSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKVEMTVIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+ TGL +PCG+CP
Sbjct: 264 DGQVKLYRGVNAVIQPTGLIRTPCGLCP 291
>gi|226442700|ref|NP_001139930.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
gi|221220164|gb|ACM08743.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
Length = 314
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 104/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEVARDSKQNPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS EDI TIL TL++DGK+E + ++
Sbjct: 202 VQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG + R V+P TGL +PCG+CP
Sbjct: 262 DGQMKLCRGVNPIIQPTGLVKAPCGLCP 289
>gi|348538120|ref|XP_003456540.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Oreochromis niloticus]
Length = 316
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 104/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQSPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS +DI TIL TL++DGK+E + ++
Sbjct: 204 VQRNSSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKVEMTVIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+ TGL +PCG+CP
Sbjct: 264 DGQMKLYRGVNAIIQPTGLVKTPCGLCP 291
>gi|260831248|ref|XP_002610571.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
gi|229295938|gb|EEN66581.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
Length = 317
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 102/146 (69%), Gaps = 8/146 (5%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYMLF+LEPD+S+TGG W+ DQDFE EFV+VLNQQC++FLQ K GP+
Sbjct: 147 ASKKKVYMLFNLEPDQSVTGGAWFSDQDFESEFVEVLNQQCFKFLQQKATTAKEAKQGPI 206
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE------QINNID-- 146
+ + A+ KEV KFIT+LGISKV+LS DI TIL TL++DGK+E Q ++ +
Sbjct: 207 AQRNASYASSKEVCKFITELGISKVQLSVADIETILNTLIYDGKVEMTVVASQSSSTEDS 266
Query: 147 GTDMYRAVSPYFAVTGLSTSPCGVCP 172
T ++RAV+P GL PCGVCP
Sbjct: 267 QTKLFRAVAPIMQPAGLMRIPCGVCP 292
>gi|318037614|ref|NP_001188039.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
gi|308324663|gb|ADO29466.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
Length = 314
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 103/148 (69%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQSPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS EDI TIL TL++DGK+E + +
Sbjct: 202 VQRNSSFATSYEVWKYICELGISKVDLSMEDIETILNTLIYDGKVEMTIIAAKEGTVGCV 261
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+ TGL +PCG+CP
Sbjct: 262 DGQMKLYRGVNSIIQPTGLVKTPCGLCP 289
>gi|47210380|emb|CAF95575.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 103/148 (69%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + + P+
Sbjct: 103 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEASREAKHSPM 162
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS +DI TIL TL++DGK E + ++
Sbjct: 163 VQRNSSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKAEMTVIAAKEGTVGSV 222
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+ TGL +PCG+CP
Sbjct: 223 DGQVKLYRGVNAVLQPTGLVRTPCGLCP 250
>gi|91094199|ref|XP_971496.1| PREDICTED: similar to AGAP011973-PA [Tribolium castaneum]
gi|270011207|gb|EFA07655.1| hypothetical protein TcasGA2_TC030601 [Tribolium castaneum]
Length = 301
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 102/142 (71%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML+DLE D S+TGG WYQDQDFE EFVDVL+QQC R+L+ K E +
Sbjct: 136 KSVSASKKKVYMLYDLEADSSVTGGAWYQDQDFESEFVDVLSQQCCRYLRQKWEDANSMG 195
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL+A+ + AT ++V KFI++LGISK+ LS +DI +IL T++ D E+I +G+ +
Sbjct: 196 GGPLLARNRSYATAQDVHKFISELGISKISLSVDDIESILYTVVLDNNAERIVATNGSFL 255
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ + G+ T+ CGVCP
Sbjct: 256 YRAVNKFMQTPGIVTTTCGVCP 277
>gi|156371113|ref|XP_001628610.1| predicted protein [Nematostella vectensis]
gi|156215591|gb|EDO36547.1| predicted protein [Nematostella vectensis]
Length = 315
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 100/150 (66%), Gaps = 16/150 (10%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYMLF+LEPD S+TGG WY DQDFE EFV+VLNQQC+++L+ K EK +
Sbjct: 145 ASKKKVYMLFNLEPDESVTGGAWYSDQDFEAEFVEVLNQQCFKYLEQKAEK----LHADP 200
Query: 95 VAQRLACATPKE-VRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD---- 149
VA+R A P E V K+IT LGISKV+LS DI TIL TL+FDG++E GT
Sbjct: 201 VARRNASYAPAEDVWKYITQLGISKVQLSVHDIETILSTLIFDGRVETTIVSAGTSTSRT 260
Query: 150 -------MYRAVSPYFAVTGLSTSPCGVCP 172
+YRA+ P TGL TSPCGVCP
Sbjct: 261 AVSGQKTLYRAIFPIVPSTGLMTSPCGVCP 290
>gi|443693096|gb|ELT94539.1| hypothetical protein CAPTEDRAFT_19562 [Capitella teleta]
Length = 314
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 104/151 (68%), Gaps = 10/151 (6%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML LEPDRS+TGG WY DQDFE EFV+VLNQQC+ +L+ +R K A +
Sbjct: 140 KSVSASKKKVYMLASLEPDRSVTGGAWYSDQDFESEFVEVLNQQCFNYLE-QRVKLARES 198
Query: 91 NGPLVAQRLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI-----NN 144
N + QR A A+ +V KFIT+LGISKV L+ EDI TIL+TL++DGK+E+
Sbjct: 199 NSEPMTQRNASFASSSDVWKFITELGISKVSLAVEDIETILDTLIYDGKVEKSIVAGGGA 258
Query: 145 IDG---TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRA++P TGL SPCGVCP
Sbjct: 259 ADGESQVKLYRAITPVIINTGLMRSPCGVCP 289
>gi|405973850|gb|EKC38540.1| DNA-directed RNA polymerase III subunit RPC6 [Crassostrea gigas]
Length = 312
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 103/147 (70%), Gaps = 10/147 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPDRS+TGG WY DQDFE EFV+VLNQQC+++L+ + + P
Sbjct: 142 ASKKKVYMLYNLEPDRSVTGGAWYSDQDFESEFVEVLNQQCFKYLEQRAAAAREAKSDP- 200
Query: 95 VAQRLACATPKE-VRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ-------INNID 146
+AQR A TP E V K+I+DLGISKV+LS+EDI TIL TL++DGK+E+ + D
Sbjct: 201 IAQRNASFTPLEDVWKYISDLGISKVQLSKEDIETILNTLIYDGKVERSLVAGQATASGD 260
Query: 147 G-TDMYRAVSPYFAVTGLSTSPCGVCP 172
G +YR+V P TGL PCG CP
Sbjct: 261 GYVKLYRSVQPLIPTTGLMRMPCGACP 287
>gi|390339281|ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 311
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 8/146 (5%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
A++KK YMLF+L PD S+TGGTWY DQ+FE EFV+VLN QC++FLQ K E + PL
Sbjct: 141 AARKKAYMLFNLTPDPSVTGGTWYSDQEFESEFVEVLNHQCFKFLQQKVESVSALQLDPL 200
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ-INNIDGT----- 148
+ + + +P+EV KFIT+L ISKV+LS +DI TIL TL++DGK+E I+ GT
Sbjct: 201 LKRNRSFVSPEEVWKFITELRISKVDLSVDDINTILNTLIYDGKVEMTISAGAGTSSSDS 260
Query: 149 --DMYRAVSPYFAVTGLSTSPCGVCP 172
+YRA+ P TGL SPCGVCP
Sbjct: 261 SSKLYRAIQPLTQPTGLMRSPCGVCP 286
>gi|427797839|gb|JAA64371.1| Putative dna-directed rna polymerase iii subunit rpc6, partial
[Rhipicephalus pulchellus]
Length = 329
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 105/161 (65%), Gaps = 20/161 (12%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYMLF+LEPDRS+TGG WY +Q+FE EFV+VLNQQC+RFL +K+ A +T
Sbjct: 164 KSVSASKKKVYMLFNLEPDRSVTGGAWYSEQEFESEFVEVLNQQCHRFL-IKKLTVAKDT 222
Query: 91 NG--PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI------ 142
+ PL+ + + A+ KEV +FI LGISKV+LS EDI IL TL++DGK+E+
Sbjct: 223 SAGDPLLEKNASFASSKEVWEFIKKLGISKVQLSVEDIEMILSTLIYDGKVEKTVVCGSG 282
Query: 143 -----------NNIDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
++ D ++YRAV P TGL PCG CP
Sbjct: 283 SSLSSSSRSASSSEDLVNLYRAVEPLIDSTGLMRIPCGTCP 323
>gi|427788023|gb|JAA59463.1| Putative dna-directed rna polymerase iii subunit rpc6
[Rhipicephalus pulchellus]
Length = 335
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 105/161 (65%), Gaps = 20/161 (12%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYMLF+LEPDRS+TGG WY +Q+FE EFV+VLNQQC+RFL +K+ A +T
Sbjct: 139 KSVSASKKKVYMLFNLEPDRSVTGGAWYSEQEFESEFVEVLNQQCHRFL-IKKLTVAKDT 197
Query: 91 NG--PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI------ 142
+ PL+ + + A+ KEV +FI LGISKV+LS EDI IL TL++DGK+E+
Sbjct: 198 SAGDPLLEKNASFASSKEVWEFIKKLGISKVQLSVEDIEMILSTLIYDGKVEKTVVCGSG 257
Query: 143 -----------NNIDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
++ D ++YRAV P TGL PCG CP
Sbjct: 258 SSLSSSSRSASSSEDLVNLYRAVEPLIDSTGLMRIPCGTCP 298
>gi|449666947|ref|XP_002169336.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Hydra
magnipapillata]
Length = 517
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 98/149 (65%), Gaps = 11/149 (7%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
S+KKVYML+++ PD S+TGG WY DQDFE EFVD+LNQQC++FL K ++ PL
Sbjct: 345 VSEKKVYMLYNMVPDTSVTGGAWYSDQDFEAEFVDILNQQCHKFLLQKLQQAQEMKIDPL 404
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI-------NNIDG 147
+ + + A+ EV K+I+DLGISKV L+ +DI TIL TLL+DG E I +NI+
Sbjct: 405 LQRNRSYASSHEVWKYISDLGISKVSLTIKDIETILSTLLYDGMAEMIIVSDSSMDNIES 464
Query: 148 ----TDMYRAVSPYFAVTGLSTSPCGVCP 172
+YRAV P VTGL PCGVCP
Sbjct: 465 GVIQKKLYRAVKPLLPVTGLMRIPCGVCP 493
>gi|291222494|ref|XP_002731250.1| PREDICTED: Polr3f protein-like [Saccoglossus kowalevskii]
Length = 309
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 99/142 (69%), Gaps = 4/142 (2%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++++PDRS+TGG WY DQDFE EFV+VLNQQC +FL R N+ + P+
Sbjct: 143 ASKKKVYMLYNIDPDRSVTGGAWYSDQDFESEFVEVLNQQCMKFLHQTRVNAENSKHDPI 202
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE--QINNIDG--TDM 150
+ + A+ EV KFI++LGISKV+LS EDI TIL TL++D K+E + +++ +
Sbjct: 203 TKRNASYASSNEVWKFISELGISKVQLSVEDIETILNTLIYDNKVEVTVVASVESGQIKL 262
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YR++ TGL + CGVCP
Sbjct: 263 YRSIELLIEPTGLMRTACGVCP 284
>gi|198424749|ref|XP_002126762.1| PREDICTED: similar to Polr3f protein [Ciona intestinalis]
Length = 310
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 98/143 (68%), Gaps = 5/143 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN-GP 93
A+K+KVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E T P
Sbjct: 143 AAKRKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQQKCENAEKETTLSP 202
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ----INNIDGTD 149
+ A+ +EV +FI+ LGISKV LS EDI TIL TL++DGK++Q + N +
Sbjct: 203 TATNASSFASSEEVLEFISKLGISKVTLSPEDIETILNTLIYDGKVQQTVVPVANGESKK 262
Query: 150 MYRAVSPYFAVTGLSTSPCGVCP 172
+++A+ P T + +PC +CP
Sbjct: 263 LFKALKPLIETTDFARTPCSLCP 285
>gi|346468447|gb|AEO34068.1| hypothetical protein [Amblyomma maculatum]
Length = 333
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 101/158 (63%), Gaps = 16/158 (10%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPDRS++GG WY DQ+FE EFV+VLNQQC+RFL K +
Sbjct: 139 KSVSASKKKVYMLYNLEPDRSVSGGAWYNDQEFESEFVEVLNQQCHRFLLKKLTVAKETS 198
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI----NNID 146
+ P++ + + A+ KEV +FI LGISKV+LS EDI TIL TL++DGK E+ +++
Sbjct: 199 SDPVLEKNASFASSKEVWEFIKKLGISKVQLSLEDIETILNTLIYDGKAEKTVVCGSSVL 258
Query: 147 G------------TDMYRAVSPYFAVTGLSTSPCGVCP 172
G ++YRA+ P GL PCG CP
Sbjct: 259 GGSSKNSSSSEELLNLYRAIEPLVESAGLMRMPCGTCP 296
>gi|395829733|ref|XP_003788000.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Otolemur garnettii]
Length = 310
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 99/147 (67%), Gaps = 9/147 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++++PDR +TGG WY DQDFE EFV+VLN QC++FLQ K E + P+
Sbjct: 139 ASKKKVYMLYNMQPDRPVTGGAWYSDQDFESEFVEVLNHQCFKFLQTKAETAQESKKNPV 198
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID-----GTD 149
+ + + A+ +V K+I +LGIS+VELS EDI TIL TL++DGK++ + GTD
Sbjct: 199 IQRNSSFASSHKVWKYICELGISEVELSMEDIETILNTLIYDGKVKMTIIVAKEGTVGTD 258
Query: 150 ----MYRAVSPYFAVTGLSTSPCGVCP 172
+YRAVSP GL +PC + P
Sbjct: 259 GHMKLYRAVSPIILPMGLIRAPCDLXP 285
>gi|196007462|ref|XP_002113597.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
gi|190584001|gb|EDV24071.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
Length = 307
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 100/143 (69%), Gaps = 5/143 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN-NTNGP 93
ASKKK+YMLF+L+PD S+TGG WY DQDFE EFV+VLNQQCYR L K E++ N N P
Sbjct: 140 ASKKKLYMLFNLDPDISVTGGAWYSDQDFESEFVEVLNQQCYRCLVQKVEESLNLCVNQP 199
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI--NNIDGTD-- 149
++ + A+ +EV K IT+L ISKV L+ DI TIL TL++DGK E ++ DG +
Sbjct: 200 RISLNNSFASSEEVWKIITNLKISKVTLTVTDIETILNTLIYDGKAEMKIESDPDGQEFK 259
Query: 150 MYRAVSPYFAVTGLSTSPCGVCP 172
+YRAV P +GL +PCG+CP
Sbjct: 260 LYRAVKPIIDASGLEKTPCGICP 282
>gi|195572836|ref|XP_002104401.1| GD18467 [Drosophila simulans]
gi|194200328|gb|EDX13904.1| GD18467 [Drosophila simulans]
Length = 280
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 80/101 (79%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILE 131
GPL ++++C T EV+KFI+DLGISKV L+E D+ TIL+
Sbjct: 188 EGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILQ 228
>gi|2228752|gb|AAB63677.1| RNA polymerase III subunit [Homo sapiens]
Length = 317
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 83/106 (78%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVE 249
>gi|321463805|gb|EFX74818.1| hypothetical protein DAPPUDRAFT_324023 [Daphnia pulex]
Length = 245
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTN 91
+K KVYMLFDL+PDRS+TGG+WY D +FE E VD++NQQCYR LQ K E +
Sbjct: 78 ISVAKIKVYMLFDLQPDRSVTGGSWYTDGEFESELVDIMNQQCYRMLQQKAEAAKLKAMD 137
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD-- 149
GPL+ + + + KE+ + I+D+ I K L+ E+I ILETL++DGKIE DG +
Sbjct: 138 GPLIVRNASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERI 197
Query: 150 -MYRAVSPYFAVTGLSTSPCGVCP 172
YR V + + PCGVCP
Sbjct: 198 KTYRIVETLLSSAAIVRIPCGVCP 221
>gi|146332185|gb|ABQ22598.1| DNA-directed RNA polymerase III subunit F-like protein [Callithrix
jacchus]
Length = 156
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 88/131 (67%), Gaps = 10/131 (7%)
Query: 52 LTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFI 111
+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P++ + + A+ EV K+I
Sbjct: 1 VTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYI 60
Query: 112 TDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNIDG-TDMYRAVSPYFAVT 161
+LGISKVELS EDI TIL TL++DGK+E + ++DG +YRAV+P T
Sbjct: 61 CELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPT 120
Query: 162 GLSTSPCGVCP 172
GL +PCG+CP
Sbjct: 121 GLVRAPCGLCP 131
>gi|321463822|gb|EFX74835.1| hypothetical protein DAPPUDRAFT_199715 [Daphnia pulex]
Length = 322
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTN 91
+K KVYMLFDL+PDRS+TGG+WY D +FE E VD++NQQCYR LQ K E +
Sbjct: 155 ISVAKIKVYMLFDLQPDRSVTGGSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMD 214
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD-- 149
GPL+ + + + KE+ + I+D+ I K L+ E+I ILETL++DGKIE DG +
Sbjct: 215 GPLIVRNASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERI 274
Query: 150 -MYRAVSPYFAVTGLSTSPCGVCP 172
YR V + + PCGVCP
Sbjct: 275 KTYRIVETLLSSAAIVRIPCGVCP 298
>gi|321463825|gb|EFX74838.1| hypothetical protein DAPPUDRAFT_56706 [Daphnia pulex]
Length = 322
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTN 91
+K KVYMLFDL+PDRS+TGG+WY D +FE E VD++NQQCYR LQ K E +
Sbjct: 155 ISVAKIKVYMLFDLQPDRSVTGGSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMD 214
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD-- 149
GPL+ + + + KE+ + I+D+ I K L+ E+I ILETL++DGKIE DG +
Sbjct: 215 GPLIVRNASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERI 274
Query: 150 -MYRAVSPYFAVTGLSTSPCGVCP 172
YR V + + PCGVCP
Sbjct: 275 KTYRIVETLLSSAAIVRIPCGVCP 298
>gi|344239296|gb|EGV95399.1| Protein transport protein Sec23B [Cricetulus griseus]
Length = 630
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 87/149 (58%), Gaps = 46/149 (30%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ
Sbjct: 82 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQ-------------- 127
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+KVELS EDI TIL TL++DGK+E + ++
Sbjct: 128 ----------------------TKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 165
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCPD 173
DG +YRAV+P TGL +PCG+CPD
Sbjct: 166 DGHMKLYRAVNPILPPTGLVRAPCGLCPD 194
>gi|193613196|ref|XP_001944559.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Acyrthosiphon pisum]
Length = 318
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 89/144 (61%), Gaps = 2/144 (1%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ A++K VYMLFDLEPD S+TGG WY +Q+FE EF+++L + Y+FL+ K+ K NT
Sbjct: 150 KSVAAARKIVYMLFDLEPDSSITGGAWYSNQEFESEFIEILTKHSYKFLEAKKSKALKNT 209
Query: 91 N--GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
PLV + AT V +FI+ GISKV L+ EDI +IL+ L++DG + N +G
Sbjct: 210 TIRSPLVKYNTSYATADRVLEFISKTGISKVRLTVEDIISILDLLVYDGLAAKRVNSEGK 269
Query: 149 DMYRAVSPYFAVTGLSTSPCGVCP 172
YR+ + +S PCG CP
Sbjct: 270 LEYRSTKTLLSRNAVSFLPCGSCP 293
>gi|321451182|gb|EFX62917.1| hypothetical protein DAPPUDRAFT_130662 [Daphnia pulex]
Length = 298
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT-NGP 93
A+KKKVYMLF+L+PDRS+TGG+WY D +FE E VD+LNQQCYR LQ K E + +GP
Sbjct: 159 AAKKKVYMLFNLQPDRSVTGGSWYSDNEFESELVDILNQQCYRILQQKSEAAKQKSMDGP 218
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140
V + + + KE+ + I+D+ I K L+ EDI TIL+TL++DGKIE
Sbjct: 219 FVVRNSSFLSSKEICQIISDMKIVKFNLTVEDIETILDTLIYDGKIE 265
>gi|391335259|ref|XP_003742013.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Metaseiulus occidentalis]
Length = 355
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 86/149 (57%), Gaps = 8/149 (5%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ A+KKKVYML++LEPDRS+TGG WY QDFE EFVD+L QQC RFL K + +
Sbjct: 156 KSVSAAKKKVYMLYELEPDRSITGGAWYSGQDFESEFVDILQQQCLRFLVHKAKTASEKF 215
Query: 91 NGPLVAQR-LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI------EQI- 142
+ R A A+ ++V FI LGISKV+L DI IL TL + GK+ E+I
Sbjct: 216 QDDFINMRNNAVASTEDVWNFIKQLGISKVQLDVGDIEVILNTLHYQGKVVRSISSEKIG 275
Query: 143 NNIDGTDMYRAVSPYFAVTGLSTSPCGVC 171
++ D ++ ++ + PCG C
Sbjct: 276 DSNDHLSLWASLDHSTTSMAICNIPCGKC 304
>gi|148696517|gb|EDL28464.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_d
[Mus musculus]
Length = 287
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 179 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 238
Query: 95 VAQRLACATPKEVRKFITDLGISKV 119
+ + + A+ EV K+I +LGISKV
Sbjct: 239 IQRNSSFASSHEVWKYICELGISKV 263
>gi|149041226|gb|EDL95159.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 293
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 199 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 258
Query: 95 VAQRLACATPKEVRKFITDLGISKV 119
+ + + A+ EV K+I +LGISKV
Sbjct: 259 IQRNSSFASSHEVWKYICELGISKV 283
>gi|148696516|gb|EDL28463.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_c
[Mus musculus]
Length = 238
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKV 119
+ + + A+ EV K+I +LGISKV
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKV 228
>gi|119630644|gb|EAX10239.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_a [Homo sapiens]
Length = 153
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 64/84 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 60 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 119
Query: 95 VAQRLACATPKEVRKFITDLGISK 118
+ + + A+ EV K+I +LGISK
Sbjct: 120 IQRNSSFASSHEVWKYICELGISK 143
>gi|302845389|ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
gi|300260438|gb|EFJ44657.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
Length = 271
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 18/138 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVYML +LEP R LTGG WY + F+ EF++VL + CY + +KR+ +++ G
Sbjct: 124 RKVYMLSELEPSRELTGGAWYTENQFDSEFINVLREACYSY--IKRKDKVSSSLG----- 176
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI--NNIDGTDMYR-AV 154
E+ FI G SKVEL EDI TI+ TL++DG+++++ + D YR AV
Sbjct: 177 --------EIAAFIRSRGFSKVELRIEDIHTIIMTLVYDGRVDEVEPEGDEDEDHYRLAV 228
Query: 155 SPYFAVTGLSTSPCGVCP 172
T L+ PCGVCP
Sbjct: 229 LGIPDSTSLTDVPCGVCP 246
>gi|384251133|gb|EIE24611.1| RNA polymerase Rpc34 [Coccomyxa subellipsoidea C-169]
Length = 275
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 76/136 (55%), Gaps = 19/136 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVY+LF+LEP R LTGG WY QDF+ EF+ VL Q C+++++ +
Sbjct: 133 RKVYILFELEPARELTGGAWYTGQDFDAEFIQVLQQACHKYIENE--------------- 177
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157
AT +EV F+ G S+VEL + D+ IL TL FDG +E + DG ++YR
Sbjct: 178 --GVATLEEVADFVRTKGFSRVELRDADVLCILRTLEFDGLVESSLSDDG-EVYRPARHV 234
Query: 158 FAVTGLSTS-PCGVCP 172
T TS PCGVCP
Sbjct: 235 VPKTSPFTSMPCGVCP 250
>gi|452825669|gb|EME32664.1| DNA-directed RNA polymerase III subunit C34 [Galdieria sulphuraria]
Length = 288
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 28/150 (18%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ++ KK+YMLFDLEP +TGG WY +Q+F+ EF DVL QQ RF++ ++
Sbjct: 131 KSVKSKNKKLYMLFDLEPSIDVTGGPWYYNQEFDAEFFDVLYQQSLRFIR-------GSS 183
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
G V +EV +IT LGISK +L +D ++L+T+++DG IE+I GTD+
Sbjct: 184 TGVAV---------EEVANYITSLGISKEKLEIKDFESLLQTMIYDGVIERI--CKGTDL 232
Query: 151 YRAVSPY--------FAVTGLSTSPCGVCP 172
++ + Y FA G PCG+CP
Sbjct: 233 EKSTTVYRYCHHTSPFATLG--EVPCGICP 260
>gi|402590744|gb|EJW84674.1| RNA polymerase Rpc34 subunit family protein [Wuchereria bancrofti]
Length = 296
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTNGP 93
+ KK YML+D+ D SLTGGT+Y DQ + +FV+ L C LQ KR+ + N+ N P
Sbjct: 137 GTTKKCYMLYDMVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKLSEDNHKNDP 196
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
A+ A EV +FI + G+ +V+LS DI +IL L DG IE+ DG MYRA
Sbjct: 197 SAAREFAFVRSTEVAQFIREKGVCRVQLSVVDIESILSVALLDGFIER--RADG--MYRA 252
Query: 154 VSPYFAVTGLSTSPCGVCP 172
++ S PC CP
Sbjct: 253 LTAKMTRCAPSLCPCIHCP 271
>gi|170592535|ref|XP_001901020.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
gi|158591087|gb|EDP29700.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
Length = 325
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTNGP 93
+ KK YML+D+ D SLTGGT+Y DQ + +FV+ L C LQ KR+ + N+ N P
Sbjct: 166 GTTKKCYMLYDMVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKLSEDNHKNDP 225
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
A+ A EV +FI + G+ +V+LS DI +IL L DG IE+ DG MYRA
Sbjct: 226 SAAREFAFVRSTEVAQFIREKGVCRVQLSVVDIESILSVALLDGFIER--RADG--MYRA 281
Query: 154 VSPYFAVTGLSTSPCGVCP 172
++ S PC CP
Sbjct: 282 LTAKMTRCAPSLCPCIHCP 300
>gi|159485518|ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chlamydomonas reinhardtii]
gi|158281290|gb|EDP07045.1| predicted protein [Chlamydomonas reinhardtii]
Length = 285
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 21/146 (14%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ + +KVYML +LEP R LTGG WY + F+ EF++VL + C+ ++
Sbjct: 132 KNVNSPSRKVYMLAELEPSRELTGGAWYTENQFDSEFINVLREACFSYI----------- 180
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI---NNIDG 147
R + V FI G SKVEL EDI+TI+ TL++DG+++++ D
Sbjct: 181 ------SRQGDVSLSAVAAFIRAKGFSKVELRTEDIQTIVMTLVYDGRVDEVEPEGEDDN 234
Query: 148 TDMYR-AVSPYFAVTGLSTSPCGVCP 172
D YR AV P T L+ PCGVCP
Sbjct: 235 DDHYRPAVLPVPDSTPLTDVPCGVCP 260
>gi|328769882|gb|EGF79925.1| hypothetical protein BATDEDRAFT_12133 [Batrachochytrium
dendrobatidis JAM81]
Length = 233
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 9/141 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
KKVYML +L+P LTGG WY DQ+ +VEF+D L Q Y+++ K N+ P
Sbjct: 71 KKVYMLSELDPSVELTGGAWYTDQELDVEFIDQLAHQIYKYICSKSFPPNTNSIFPSSHP 130
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID-GTD----MYR 152
C ++ K+I+ GI+ V+LS D++++++ L+FDGK+EQI +I G++ YR
Sbjct: 131 YPTC---NDLHKWISKSGITTVQLSHTDVQSLIDRLIFDGKVEQIQSIHTGSNEDIWAYR 187
Query: 153 AV-SPYFAVTGLSTSPCGVCP 172
A S + + PCG CP
Sbjct: 188 ATRSSVLNGSVWTDVPCGRCP 208
>gi|312083987|ref|XP_003144089.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
gi|307760747|gb|EFO19981.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
Length = 294
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTNGP 93
+ KK YML+ D SLTGGT+Y DQ + +FV+ L C LQ KR+ + N+ N P
Sbjct: 135 GTTKKCYMLYGAVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKFSEDNHKNDP 194
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
A+ A EV +FI + G+ +V+LS DI +IL L DG IE+ DG MYRA
Sbjct: 195 AAAREFAFVRSTEVAQFIREKGVCRVQLSVADIESILSVALLDGLIER--RADG--MYRA 250
Query: 154 VSPYFAVTGLSTSPCGVCP 172
+ S PC CP
Sbjct: 251 LISKITRCAPSLCPCIHCP 269
>gi|308497993|ref|XP_003111183.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
gi|308240731|gb|EFO84683.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
Length = 296
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
+ KK Y++FDLEPD SLTGGT+Y DQ + E ++ L C + +R+ + +
Sbjct: 136 GTTKKCYIVFDLEPDMSLTGGTFYSDQQLDSELINTLISVCGSYASSRRKHAIESNPNNI 195
Query: 95 VAQRLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
QR + P+E+ +FIT+ + V LS ED+ ILE + DG IE+ DG RA
Sbjct: 196 QMQRESSYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTIER--RADGK--IRA 251
Query: 154 VSPYFAVTGLSTSPCGVCP 172
+P +++ L + PC VCP
Sbjct: 252 CAPRSSISPLVSVPCAVCP 270
>gi|341883104|gb|EGT39039.1| hypothetical protein CAEBREN_20869 [Caenorhabditis brenneri]
Length = 296
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN-NTNGP 93
+ KK Y+LFD+EPD SLTGGT+Y DQ + E ++ L C + +R+ N N
Sbjct: 136 GTTKKCYILFDMEPDMSLTGGTFYSDQQLDSELINTLISICGSYAASRRKHAIEANPNNI 195
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
+ + + P+E+ +FIT+ I V LS ED+ ILE + DG IE+ DG RA
Sbjct: 196 QLQREESYIRPQEIAQFITEKRILNVPLSVEDLDRILEVAVLDGSIER--RADGK--IRA 251
Query: 154 VSPYFAVTGLSTSPCGVCP 172
+P +++ L + PC VCP
Sbjct: 252 CAPRSSISPLVSVPCAVCP 270
>gi|17509641|ref|NP_491427.1| Protein W09C3.4 [Caenorhabditis elegans]
gi|20139429|sp|P91529.1|RPC6_CAEEL RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|373218920|emb|CCD64234.1| Protein W09C3.4 [Caenorhabditis elegans]
Length = 296
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
+ +K Y+LF +EPD SLTGGT+Y DQ + E ++ L C + +R+ + +
Sbjct: 136 GTTRKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNI 195
Query: 95 VAQRLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
QR A P+E+ +FIT+ + V LS ED+ ILE + DG IE+ DG RA
Sbjct: 196 QMQREASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTIER--RADGK--IRA 251
Query: 154 VSPYFAVTGLSTSPCGVCP 172
P +++ L + PC +CP
Sbjct: 252 CPPRSSISPLVSVPCAICP 270
>gi|168002808|ref|XP_001754105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694659|gb|EDQ81006.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 361
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 22/140 (15%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVYMLFDL P R +TGG WY +QD++ EFVDV+ QQC +F+
Sbjct: 214 RKVYMLFDLTPSREVTGGAWYTEQDYDAEFVDVVKQQCLQFI-----------------T 256
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN----IDGTDMYRA 153
R A + + I GI++VEL E+ + I++TL+ DG +E+ T YR
Sbjct: 257 RQGLADLEAIADAIKKSGITQVELGLEEFKQIMDTLVLDGDVEETMGGGTYSSDTLCYRV 316
Query: 154 VSPYFAVT-GLSTSPCGVCP 172
T L+ PCG+CP
Sbjct: 317 AKARIPETSALTNVPCGICP 336
>gi|303272183|ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463427|gb|EEH60705.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 294
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 35/153 (22%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVYMLF+LEP R +TGG WY + +++ EF+ VL +QC +F+ N+ G
Sbjct: 131 RKVYMLFELEPSREITGGAWYTEHEYDAEFISVLREQCDKFI---------NSRGK---- 177
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI--------------N 143
AT +V F+ +S V+L +E++ I+ TL++DGKI+ I
Sbjct: 178 ----ATLDDVWDFVKRAKLSNVDLGKEEVLQIVNTLVYDGKIDAIEVPDPNFKPTAKKGK 233
Query: 144 NID----GTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ID G D A P + + L+ PCG+CP
Sbjct: 234 DIDAGHEGEDYSPAAIPIPSESALTNVPCGLCP 266
>gi|145356015|ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582478|gb|ABP00555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 259
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 31/149 (20%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVYML++LEP R +TGG WY +Q+++ EF+ VL +QC +F+ RE+
Sbjct: 103 RKVYMLYELEPSREITGGAWYTEQEYDAEFISVLREQCVKFI-YSRERV----------- 150
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI---DG------- 147
T KEV F+ +S+++L ++++ I+ TL++DGK+++I + DG
Sbjct: 151 -----TLKEVSDFVRASELSRIDLGQDEVLQIVNTLVYDGKVDEIKDESQDDGMGKADED 205
Query: 148 ----TDMYRAVSPYFAVTGLSTSPCGVCP 172
T RA P + PCGVCP
Sbjct: 206 FQPITFYTRAALPVPESNAYTDIPCGVCP 234
>gi|348684826|gb|EGZ24641.1| hypothetical protein PHYSODRAFT_554736 [Phytophthora sojae]
Length = 301
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 23/148 (15%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ + KK+YMLFDL P +TGG WY +Q+F+ F+D L+ Y ++ T N
Sbjct: 141 KSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAI 200
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD- 149
+ A GISKV L E+IR+I++TL++DG++E++ ++ T
Sbjct: 201 TDKVHAS-----------------GISKVALGPEEIRSIIQTLMYDGRVEEVRSVRLTPG 243
Query: 150 -----MYRAVSPYFAVTGLSTSPCGVCP 172
Y+ LS +PCGVCP
Sbjct: 244 ASHEVKYKVSQQITTFNYLSETPCGVCP 271
>gi|301121919|ref|XP_002908686.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
gi|262099448|gb|EEY57500.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
Length = 297
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 23/148 (15%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ + KK+YMLFDL P +TGG WY +Q+F+ F+D L+ Y ++ T N
Sbjct: 137 KSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAI 196
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD- 149
+ A GISKV L E+IR+I++TL++DG++E++ ++ T
Sbjct: 197 TDKVHAS-----------------GISKVALGPEEIRSIIQTLMYDGRVEEVRSVRLTPG 239
Query: 150 -----MYRAVSPYFAVTGLSTSPCGVCP 172
Y+ LS +PCGVCP
Sbjct: 240 ASHEVKYKVSQQITTFNYLSETPCGVCP 267
>gi|268564211|ref|XP_002639044.1| Hypothetical protein CBG22296 [Caenorhabditis briggsae]
Length = 296
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
S KK Y+LFDLEPD +LTGGT+Y DQ + E ++ L + +R+ +
Sbjct: 136 GSTKKCYILFDLEPDMALTGGTFYSDQQLDSELINTLISVSGSYAASRRKLALEEYPNNI 195
Query: 95 VAQR-LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
QR + P+E+ +FIT+ + V L+ ED+ ILE + DG IE+ DG RA
Sbjct: 196 QMQRETSYIRPQEIAQFITEKRLLNVPLTIEDLERILEVAVLDGTIER--RADGK--IRA 251
Query: 154 VSPYFAVTGLSTSPCGVCP 172
+P +++ L + PC VCP
Sbjct: 252 CAPRSSISPLVSVPCAVCP 270
>gi|307109209|gb|EFN57447.1| hypothetical protein CHLNCDRAFT_59631 [Chlorella variabilis]
Length = 281
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 23/146 (15%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ + + +KVYML++LEP + LTGG WY F+ EF+ VL + ++ NT
Sbjct: 130 KSVQNASRKVYMLYELEPAKELTGGPWYGPDAFDSEFITVLQEATMSYI---------NT 180
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI-NNIDGTD 149
G AT ++ +FI + GISK L E+D+ I+ TL DGKIE + + DG
Sbjct: 181 KGD--------ATLADIVRFIKETGISKQALQEDDVERIINTLECDGKIEGVEGDEDGLP 232
Query: 150 MYRAVSPYFAV---TGLSTSPCGVCP 172
YR P ++ T ++ PCGVCP
Sbjct: 233 HYRL--PLMSIPEATPFTSIPCGVCP 256
>gi|432948705|ref|XP_004084130.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like,
partial [Oryzias latipes]
Length = 191
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 44/48 (91%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK 82
ASKKKVYML++++PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K
Sbjct: 144 ASKKKVYMLYNVQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSK 191
>gi|148908665|gb|ABR17440.1| unknown [Picea sitchensis]
Length = 262
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 27/145 (18%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
KKVYML +L P + +TGG WY Q+F+ EF +++ QQC +F V Q
Sbjct: 110 KKVYMLAELTPSKEITGGAWYTGQNFDTEFTNIVKQQCLQF----------------VLQ 153
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM------- 150
+ AT + V F+ GISKVEL E+++ IL+ L+ DG +E++ + D
Sbjct: 154 Q-GVATIESVADFVRKSGISKVELKVEELKQILDMLVLDGDVEEVISTGTGDFAAIPINK 212
Query: 151 --YRAVSPYFAVTGLSTS-PCGVCP 172
YR + T+ PCGVCP
Sbjct: 213 LCYRGSQARIQESSAFTNIPCGVCP 237
>gi|384496643|gb|EIE87134.1| hypothetical protein RO3G_11845 [Rhizopus delemar RA 99-880]
Length = 296
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Query: 29 QDQDFEASK------KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK 82
Q Q+ +A K +K+YMLF+L P +TGG WY DQ+ + EF+D L C +++ +
Sbjct: 128 QKQEIKAVKHVKYPTRKIYMLFNLTPSSEVTGGAWYTDQELDTEFIDSLKAACLKYIASR 187
Query: 83 R-EKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ 141
+ + A AT EVR+FIT+ IS ++LS +DI +IL+ L++DG IE+
Sbjct: 188 SFPRIEGIPDAVFGADHEHYATASEVRRFITESRISSIDLSVKDIESILDILVYDGDIEK 247
>gi|213407148|ref|XP_002174345.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
gi|212002392|gb|EEB08052.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
Length = 301
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML+DL P +TGG W+ DQ+ ++EF++ L + Y+++ K + N G +
Sbjct: 142 RKIYMLYDLAPSSEITGGPWFTDQELDIEFINNLKKVVYKYIHSKSYPSKKNHKGSDLLW 201
Query: 98 RL---ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ + ++ ++ I++V+LS ++ ++++ L++DGK+E+ DGT +RAV
Sbjct: 202 SVDYNGYPSAIQIHDWLRSTNITEVDLSLANVMSLVDVLVYDGKVEK--RPDGT-TFRAV 258
Query: 155 SPY-FAVTGLSTSPCGVCP 172
+ G + SPCG CP
Sbjct: 259 RQVEGTIDGYTESPCGKCP 277
>gi|19075898|ref|NP_588398.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|9297041|sp|O94553.1|RPC6_SCHPO RecName: Full=Probable DNA-directed RNA polymerase III subunit
rpc6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III 34 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C34
gi|4176538|emb|CAA22872.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe]
gi|76782161|gb|ABA54851.1| RNA polymerase III subunit Rpc34 [Schizosaccharomyces pombe]
Length = 301
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP-LV- 95
+K+YML+DL P LTGG W+ DQ+ +VEF++ L + YR++ K GP LV
Sbjct: 142 RKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVW 201
Query: 96 -AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ T ++ ++ I+KV+LS ++ ++++ L++DGK+E+ + DG YRA+
Sbjct: 202 GPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKVEKRS--DGAS-YRAI 258
Query: 155 SPYFA-VTGLSTSPCGVCP 172
+ + SPCG CP
Sbjct: 259 RVNNENIDAFTESPCGNCP 277
>gi|255080198|ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299]
gi|226518946|gb|ACO64937.1| RNA polymerase [Micromonas sp. RCC299]
Length = 307
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 44/162 (27%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVYML++LEP R +TGG WY + +++ EF++VL +QC +F +V Q
Sbjct: 131 RKVYMLYELEPSREITGGAWYTEHEYDAEFINVLREQCEKF---------------IVGQ 175
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI------------ 145
T +V F+ +S VEL +E++ I+ TL++DGK++Q +
Sbjct: 176 --GKVTLDQVSDFVKKTKLSHVELGKEEVLQIVNTLVYDGKVDQFDEHEKGEGDADDAKG 233
Query: 146 ------------DGTDMYRAVSPYFAV---TGLSTSPCGVCP 172
DG + V + V + ++ PCGVCP
Sbjct: 234 DGDVGNDERDYGDGEKVTYYVPAAYPVPEKSAFTSVPCGVCP 275
>gi|296422853|ref|XP_002840973.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637200|emb|CAZ85164.1| unnamed protein product [Tuber melanosporum]
Length = 303
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR--EKTANNTNGPLV 95
+ +YML++L P +TGG W+ D + + EFV+ L +F+ K + A G
Sbjct: 145 RNIYMLYELTPSIEVTGGPWFTDSELDKEFVNELLTAITKFMVSKSFPKLPARGVIGSFP 204
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVS 155
T +V ++ +++V+L+E DIR++L+ L++DGKIE+ + G YRAV
Sbjct: 205 PGYTGYPTLNQVYLWVKSSNLTEVDLAEADIRSLLDVLVYDGKIER---VVGGMAYRAVR 261
Query: 156 PYFAVTGLSTSPCGVCP 172
++ G + SPCG CP
Sbjct: 262 RPDSINGFTESPCGRCP 278
>gi|308813722|ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
gi|116056050|emb|CAL58583.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
Length = 371
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 33/150 (22%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVYML++LEP R +TGG WY + + EF++VL +QC +F+ R++
Sbjct: 215 RKVYMLYELEPSREITGGAWYTEGTHDDEFINVLREQCVKFI-YSRDRV----------- 262
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI---EQINNIDGTDM---- 150
T EV +F+ +S VEL +++ I+ TL+FDGK+ E + DG +
Sbjct: 263 -----TLSEVSEFVRSSKLSHVELGTDEVLQIVNTLVFDGKVDENEDESQDDGMTVADED 317
Query: 151 YRAVSPYFAVTGLSTS--------PCGVCP 172
++AV Y++ L PCGVCP
Sbjct: 318 FKAVK-YYSRAALPVPDSNPYTDIPCGVCP 346
>gi|320168667|gb|EFW45566.1| polymerase III polypeptide F [Capsaspora owczarzaki ATCC 30864]
Length = 349
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 33/166 (19%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML+DLEPD++L+GG WY +Q+F+ EF + R+L+ + E +
Sbjct: 150 ASKKKVYMLYDLEPDKTLSGGAWYSEQEFDSEFAQQIQHAVLRYLKSRYESCSAERK--Y 207
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGK---------------- 138
+ ++C +EV + I D+ ++ + LS ++I +L +L++ G
Sbjct: 208 IDSFVSC---EEVTQHIADIKLATIALSFQEIHEVLISLVYGGALIVKSHPLPFTRYDNA 264
Query: 139 -----------IEQINNID-GTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ Q ++D G ++ T ++T PCGVCP
Sbjct: 265 PDPDAHYLSYFVMQQEDVDPGLQLFAWKELRLPPTPMATVPCGVCP 310
>gi|345565560|gb|EGX48509.1| hypothetical protein AOL_s00080g138 [Arthrobotrys oligospora ATCC
24927]
Length = 300
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-EKTANNTNGPLV- 95
+K+YML+DL P +TGG W+ D + + +F++ L RF+ + K G +V
Sbjct: 137 RKIYMLWDLTPTIEVTGGPWFTDAELDADFINALLVAIERFVTARSFPKQKPGVAGMVVV 196
Query: 96 --AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
A T ++ +++ + +++VELSE DI+ +LE L++DGK+E++ I GT Y+A
Sbjct: 197 FEAGYTGYPTLSDITQWVKNSNLTEVELSEADIKALLEVLIYDGKLERV--IGGT-AYKA 253
Query: 154 VSPYFAVT--GLSTSPCGVCP 172
+ G++ +PCG CP
Sbjct: 254 IRKVEGAVKQGVTEAPCGRCP 274
>gi|426238798|ref|XP_004013331.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Ovis
aries]
Length = 185
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 17/128 (13%)
Query: 60 DQDFEVEFVDVLNQQCYRFLQLKR-----EKTANNTNGPLVAQRLACATPKEVRKFITDL 114
DQ + E + QQ R + + R E + P++ + + A+ EV K+I +L
Sbjct: 35 DQVIQNEMPHIEAQQ--RAVAINRLLSMAETARESKQNPMIRRNSSFASSHEVWKYICEL 92
Query: 115 GISKVELSEEDIRTILETLLFDGKIEQ---------INNIDG-TDMYRAVSPYFAVTGLS 164
GISKVELS EDI TIL TL++DGK+E + ++DG +YRAVSP TGL
Sbjct: 93 GISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGLV 152
Query: 165 TSPCGVCP 172
+P G+CP
Sbjct: 153 RAPRGLCP 160
>gi|325190908|emb|CCA25394.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
gi|325190983|emb|CCA25467.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
Length = 312
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 43/179 (24%)
Query: 4 IASKKKV-YMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLE----PDRSLTGGTWY 58
I+SK K+ YMLFDL GT + K + + D+ P +TGG WY
Sbjct: 137 ISSKNKILYMLFDL--------GT--------SCKHNLEVFIDITFLSVPSTEVTGGPWY 180
Query: 59 QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISK 118
+Q+F+ F++ L Y ++ +T K + + GISK
Sbjct: 181 NEQEFDHVFINTLCTFVYEVIKAS-----------------GMSTLKAITDKVHASGISK 223
Query: 119 VELSEEDIRTILETLLFDGKIEQINNIDGTDM-----YRAVSPYFAVTGLSTSPCGVCP 172
V L E+IR+IL+TL++DG+IEQ+ ++ M Y+ + LS +PCG+CP
Sbjct: 224 VALGSEEIRSILQTLMYDGRIEQVRSVSLKPMNNEVNYKVTQQITTMNYLSETPCGICP 282
>gi|167533399|ref|XP_001748379.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773191|gb|EDQ86834.1| predicted protein [Monosiga brevicollis MX1]
Length = 412
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
++ KK++Y+L +LE D +GG WY QDF+ +FVD++ + C + LQ E+ +
Sbjct: 178 SIKSGKKRLYILAELEVDTEHSGGPWYAGQDFDGQFVDIMRRICIKQLQ---ERLNRPYD 234
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
PL + + T +E+ FI + I++ +LS D+ +LETL++D ++ G Y
Sbjct: 235 SPLHKYQSSWLTAQEILDFIANSKIAQQDLSVGDMEKLLETLVYD-RMAIRGTRAGRRAY 293
Query: 152 RAVSPYFAVTGLSTSPCGVC 171
R + + T+PCG C
Sbjct: 294 RLTKIPLPRSAVHTAPCGHC 313
>gi|299473570|emb|CBN77965.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 300
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 25/145 (17%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
+ KK+YML++L P + +TGG WY DQ+F+ EFV L+ Y +K ++T PL
Sbjct: 140 SKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSS--YVLSYVKEQETP-----PL 192
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN------NIDGT 148
K++ I GISK++LS E+++ I+ TL++DG +E++ N D
Sbjct: 193 ----------KDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAG 242
Query: 149 D--MYRAVSPYFAVTGLSTSPCGVC 171
D +Y+ V + PCG C
Sbjct: 243 DGPVYKMAPAVEVVNAFTEVPCGTC 267
>gi|393221910|gb|EJD07394.1| hypothetical protein FOMMEDRAFT_164375 [Fomitiporia mediterranea
MF3/22]
Length = 417
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL--- 94
+K YML+ LEP S+TGG WY D + + EF+ +L C +F+ REK+ G
Sbjct: 140 RKTYMLYHLEPSSSITGGPWYTDSELDTEFIKLLMDACLKFI---REKSFPRGKGDALFP 196
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
++ A T K++R F+ I++ EL+EE I +L L+ DG+IE++
Sbjct: 197 ISSAPAYPTTKQIRTFLQKTRITETELTEEHIEMLLNVLITDGQIERL 244
>gi|269860596|ref|XP_002650018.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
gi|220066569|gb|EED44046.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
Length = 240
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
+ KK Y+L+D+EPD+ +TGG W+ + D ++ FV+ L + Y+++ LK + NN +
Sbjct: 121 TNKKTYILYDIEPDKEVTGGIWFTNNDVDLSFVNNLMEIIYQYI-LKHQALNNNKTDIIC 179
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVS 155
L AT + FI I +V++S+ +++ +LETL +DG+IE IN Y
Sbjct: 180 LSDL--ATIDTIYNFIITSNILEVKISKNEVKILLETLEYDGRIETIN-------YNTEE 230
Query: 156 PYFAV 160
Y+A+
Sbjct: 231 KYYAL 235
>gi|326430685|gb|EGD76255.1| hypothetical protein PTSG_11665 [Salpingoeca sp. ATCC 50818]
Length = 320
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
SKK Y+L+DLEPD S++GG +Y +F+ EF++ L FL+ KR K A P +
Sbjct: 160 SKKPHYILYDLEPDESVSGGVFYDGDEFDREFINNLRMVILLFLK-KRFKEAAKEENPYL 218
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVS 155
+ + TP E+ + + K+ LS D +L TL+ D + + + YR
Sbjct: 219 RFKHSYITPDEIASKLNASKVIKITLSPADCEKVLSTLVTDRLVIANDPLSSIKAYRFSK 278
Query: 156 PYFAVTGLSTSPCGVCP 172
+ LS PCG+CP
Sbjct: 279 LDRHPSALSAVPCGICP 295
>gi|149236305|ref|XP_001524030.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452406|gb|EDK46662.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 326
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN--NTNGPLV 95
+K+YML++L+P +TGG W+ D + + EF+D ++ +RF+ K A+ +TN PL
Sbjct: 138 RKIYMLYNLQPSLEVTGGPWFTDSELDTEFIDTVSHIIWRFVVAKTFPKADMYDTN-PLQ 196
Query: 96 AQRLAC---ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152
+ A ++ +F+ +S+VEL D++++ L++D KIEQI N D ++Y+
Sbjct: 197 CNYTSSSPGANMDQIMEFLNTSNVSQVELELNDVQSLCNLLVYDDKIEQIGNDDKGELYK 256
Query: 153 AVSPYFAVTGL 163
A G+
Sbjct: 257 ATRQSLVEQGM 267
>gi|429961896|gb|ELA41440.1| hypothetical protein VICG_01545 [Vittaforma corneae ATCC 50505]
Length = 236
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 69/108 (63%), Gaps = 9/108 (8%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
+ +K+Y+LFD++PD ++GG W+ + D ++ FV+ L + Y++++ GP V
Sbjct: 119 NNRKIYVLFDIKPDEDISGGVWFSNNDVDLVFVNKLMEIIYQYVR--------KPEGPFV 170
Query: 96 AQRL-ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
++ + VR+FI+ GIS+V L+ +D+ T+++ L++DGKIE+I
Sbjct: 171 LNKVDNLVKLRMVREFISTSGISEVVLTVDDVNTLIDCLVYDGKIERI 218
>gi|409046766|gb|EKM56245.1| hypothetical protein PHACADRAFT_117896 [Phanerochaete carnosa
HHB-10118-sp]
Length = 501
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ---LKREKTANNTNGPL 94
+K+YMLF LEP +TGG WY D++ + EF+ +L C +F++ R KT ++ L
Sbjct: 139 RKIYMLFHLEPSTEMTGGPWYTDKELDTEFIKLLTAACLKFIRDRSFPRSKTGESSQRLL 198
Query: 95 VAQRLACATP--KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
A + P +V+ F+ I++ +L+ E + T+L L+ DG +E++ + T
Sbjct: 199 YPISAAPSYPTAAQVQGFLNKSRITETQLTVEHVETLLNVLVLDGDVEKVPALGAT 254
>gi|440800559|gb|ELR21595.1| DNA-directed RNA polymerase III 34kD-subunit family protein,
putative [Acanthamoeba castellanii str. Neff]
Length = 230
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 18/108 (16%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQ-DQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVA 96
+KVYML+DLEP + G +Y D F+ EFV+VLN+ CYR+++ G +
Sbjct: 107 RKVYMLYDLEPSVKVKGNAFYTPDGVFDSEFVNVLNKHCYRYIE---------QEGSVTL 157
Query: 97 QRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
+ +A F+ + G+S VEL +ED++ IL+TL++DGK++++ +
Sbjct: 158 ESMAS--------FVRNSGMSNVELKDEDVQQILDTLIYDGKVDKVKD 197
>gi|395329460|gb|EJF61847.1| hypothetical protein DICSQDRAFT_105558 [Dichomitus squalens
LYAD-421 SS1]
Length = 517
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-------EKTANNT 90
+K+YML+ LEP +TGG WY D + + EF+ +L C RF++ + + ++++
Sbjct: 142 RKIYMLYHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLRFIRDRSTPKPKGADPSSSSA 201
Query: 91 NGPL--VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
N PL ++ A T ++V F++ I++ +L+ E + +L L+ DG+IE+I G
Sbjct: 202 NQPLHPISAAPAYPTAQQVLTFLSKSRITETQLATEHVEKLLNVLILDGEIERIPAF-GA 260
Query: 149 DMYRA 153
M+ A
Sbjct: 261 AMWDA 265
>gi|256086074|ref|XP_002579231.1| rna polymerase III (DNA directed) 39kD subunit-related [Schistosoma
mansoni]
gi|353228962|emb|CCD75133.1| rna polymerase III (DNA directed), 39kD subunit-related
[Schistosoma mansoni]
Length = 305
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQ-DQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
K+KVY+L +LEP L T + D + EF+ +L C ++LQ + +A++ PL
Sbjct: 138 KQKVYLLMELEPSEKLAANTLFAGDSGVDAEFISILRTACLKYLQ-DKAISASHIADPLE 196
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD------ 149
++ + + +E+ +FIT+ I V ++ +D++ +LE L F G++E + ++
Sbjct: 197 RRQASYVSCEEIHRFITNTKICTVSMTVQDVQCVLEVLKFGGELETRITSETSEQSTSFG 256
Query: 150 -MYRAVSPYFAVTGLSTSPCGVC 171
+YR + +V L+ PC +C
Sbjct: 257 ILYRLATQTPSVANLANIPCTIC 279
>gi|448533304|ref|XP_003870604.1| Rpc34 protein [Candida orthopsilosis Co 90-125]
gi|380354959|emb|CCG24475.1| Rpc34 protein [Candida orthopsilosis]
Length = 322
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 11/135 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL------QLKREKTANNTN 91
+K+YML+ L+P +TGG W+ D + + EF+D + + +RF+ ++ +++ +
Sbjct: 138 RKIYMLYHLQPSIDVTGGPWFTDSELDTEFIDTILEVVWRFIVNKTFPRMDQQQEGQRSI 197
Query: 92 GPLVAQRLAC---ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
PL A +A ++ +FI G+S VEL DIR++ + L FD K+E+I+ G
Sbjct: 198 NPLQASYIASFQGVDLDQILEFINGSGVSSVELELNDIRSLCDVLKFDDKVEEIDGHSG- 256
Query: 149 DMYRAVSPYFAVTGL 163
+++A GL
Sbjct: 257 -LFKATRQSLLEKGL 270
>gi|409080140|gb|EKM80501.1| hypothetical protein AGABI1DRAFT_58346 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 464
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ----LKREKTANNTNGP 93
+K+YML LEP SLTGG WY D + + EF+ L + CY+F++ KR++
Sbjct: 138 RKIYMLEGLEPSISLTGGPWYTDNELDTEFIQHLTEVCYKFVRDTTFPKRKEGGGEGVLY 197
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
++ T +++R + +++ ELS E + +L L+ DGKIE++ GT M+ +
Sbjct: 198 AISNPPRYPTAQDIRSSLKKAKLTETELSVEHVEMLLNVLILDGKIEKLPAF-GTSMWDS 256
Query: 154 VS 155
++
Sbjct: 257 IA 258
>gi|190345971|gb|EDK37952.2| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV-- 95
+K+YML++L+P +TGG W+ D + + EF+D L +RF+ K A P V
Sbjct: 138 RKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLVSVIWRFVASKTYPAAFQPPSPNVNP 197
Query: 96 ------AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149
+ E+ FI+ IS VEL DIR + E L++D K+E + ++ D
Sbjct: 198 VQAMYPTSNMGSVNINEISDFISSNNISNVELVINDIRALNELLIYDDKLEALPSV--PD 255
Query: 150 MYRA 153
YRA
Sbjct: 256 TYRA 259
>gi|426198093|gb|EKV48019.1| hypothetical protein AGABI2DRAFT_202311 [Agaricus bisporus var.
bisporus H97]
Length = 464
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ----LKREKTANNTNGP 93
+K+YML LEP SLTGG WY D + + EF+ L + CY+F++ KR++
Sbjct: 138 RKIYMLEGLEPSISLTGGPWYTDNELDTEFIQHLTEVCYKFVRDTTFPKRKEGGGEGVLY 197
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
++ T +++R + +++ ELS E + +L L+ DGKIE++ GT M+ +
Sbjct: 198 AISNPPRYPTAQDIRSSLKKAKLTETELSVEHVEMLLNVLILDGKIEKLPAF-GTSMWDS 256
Query: 154 VS 155
++
Sbjct: 257 IA 258
>gi|424513015|emb|CCO66599.1| DNA-directed RNA polymerase III subunit RPC6 [Bathycoccus prasinos]
Length = 463
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 17/105 (16%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+KVYM +DLEP R +TGG W+ DQ+F+ +FV ++ C F++ ++
Sbjct: 177 RKVYMKYDLEPSREITGGAWFTDQEFDAKFVKIMRDVCRDFIRKEKR------------- 223
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
T ++V + I IS V L +ED++ I++TL +DG +E I
Sbjct: 224 ----VTLQDVYEHIVKSKISNVNLRKEDVKQIVDTLFYDGDVEMI 264
>gi|444317567|ref|XP_004179441.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
gi|387512482|emb|CCH59922.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
Length = 334
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 16/128 (12%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ------------LKREK 85
+K+YML++L+P +TGG W+ D + +VEF++ L +RF+ +K+ K
Sbjct: 144 RKIYMLYNLQPSTDVTGGPWFTDSELDVEFINSLLTIVWRFVSERTFPNGFKNFTMKQSK 203
Query: 86 TANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI 145
+N A E+ +FI + ++ VELS EDIR++ + L++D ++E+I
Sbjct: 204 NSNTFEQLYAPNVKNYANIDEILEFIMNAKVANVELSNEDIRSLCQVLVYDDRLEKI--- 260
Query: 146 DGTDMYRA 153
D YR
Sbjct: 261 -AHDCYRV 267
>gi|260940459|ref|XP_002614529.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
gi|238851715|gb|EEQ41179.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
Length = 322
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-----NNTN- 91
+K+YML++L+P +TGG W+ D + + EF+D L +RF+ K A NTN
Sbjct: 137 RKIYMLYNLQPSIDVTGGPWFTDSELDTEFIDSLLTVVWRFIASKTFPAAFQDPTPNTNI 196
Query: 92 --GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149
A AT + + +F+T+ I+ ++L+ DIR++ E L+F+ K+E + D TD
Sbjct: 197 LQSVYPATHTGFATLESIMEFLTEHKITNIDLAINDIRSLCEVLIFEDKVELVK--DTTD 254
Query: 150 MYRA 153
+Y+
Sbjct: 255 VYKV 258
>gi|354543012|emb|CCE39730.1| hypothetical protein CPAR2_601500 [Candida parapsilosis]
Length = 319
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK---REKTANNTNGPL 94
+K+YML+ L+P +TGG W+ D + + EF+D + + +RF+ K R ++ PL
Sbjct: 138 RKIYMLYHLQPSIDVTGGPWFTDSELDTEFIDTILEVVWRFIVNKTFPRGDDEQHSVNPL 197
Query: 95 VAQRLAC---ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
A +A ++ FI G+S VEL DIR++ + L FD K+E+I G ++
Sbjct: 198 QASYIASFQGVDLDQILAFINGSGVSSVELELNDIRSLCDVLKFDDKVEEIEGHSG--LF 255
Query: 152 RAVSPYFAVTGL 163
+A GL
Sbjct: 256 KATRQSLVEKGL 267
>gi|428176636|gb|EKX45520.1| DNA-directed RNA polymerase III subunit RPC34 [Guillardia theta
CCMP2712]
Length = 162
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 19/143 (13%)
Query: 34 EASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP 93
KKK+Y+L +LEP LTGG WY + + E V+ Q F +++ K G
Sbjct: 13 HTGKKKMYILNELEPSAELTGGNWYTSGELDTEMVESSAQIALCFFNMRQRK------GG 66
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI---NNIDGTDM 150
VA EVR F+ + K +L+ E++ ++ETLL+DG++E++ N G
Sbjct: 67 SVA---------EVRDFLKAKDVIKCDLTMEEVFQLVETLLYDGQVERVRSENVSPGEAT 117
Query: 151 YRAVS-PYFAVTGLSTSPCGVCP 172
+R V+ P ++ LS+ P +CP
Sbjct: 118 FRVVNRPKVSLDHLSSIPTSICP 140
>gi|146420852|ref|XP_001486379.1| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV-- 95
+K+YML++L+P +TGG W+ D + + EF+D L +RF+ K A P V
Sbjct: 138 RKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLVSVIWRFVASKTYPAAFQPPSPNVNP 197
Query: 96 ------AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149
+ E+ FI+ IS VEL DIR + E L++D K+E + ++ D
Sbjct: 198 VQAMYPTSNMGLVNINEILDFISSNNISNVELVINDIRALNELLIYDDKLEALPSV--PD 255
Query: 150 MYRA 153
YRA
Sbjct: 256 TYRA 259
>gi|344300161|gb|EGW30501.1| 34-kDa subunit of RNA polymerase III (C) [Spathaspora passalidarum
NRRL Y-27907]
Length = 317
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 12/125 (9%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-----EKTANNTNG 92
+K+YML++L+P +TGG W+ D + + EF+D L +RF K ++ NN N
Sbjct: 139 RKIYMLYNLQPSIEITGGPWFTDSELDTEFIDSLVTVIWRFAASKTFPSAFQQPTNNVN- 197
Query: 93 PLVAQRLACATP----KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
P+ A A T ++ +FI+ I+ +EL DIR++ + L+FD K+E +++ T
Sbjct: 198 PIQATYPATHTGFVDLDQIMEFISVNKITNIELGLNDIRSLCDVLIFDDKLELVSHT--T 255
Query: 149 DMYRA 153
D Y+A
Sbjct: 256 DTYKA 260
>gi|45190794|ref|NP_985048.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|44983836|gb|AAS52872.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|374108272|gb|AEY97179.1| FAER191Wp [Ashbya gossypii FDAG1]
Length = 314
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP---- 93
+K+YML++L+P +TGG W+ D + +VEF++ L +R + N G
Sbjct: 145 RKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRHTSERTYPNGFNNFGTGRDK 204
Query: 94 --LVAQRLA-CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
L + +T +E+ KFI+ +S VELS+ DIR++ E L++DGK+E++
Sbjct: 205 EVLYTHTVKNYSTTEEILKFISAARVSTVELSKSDIRSLCEVLVYDGKLEKV 256
>gi|56756084|gb|AAW26220.1| SJCHGC02354 protein [Schistosoma japonicum]
Length = 305
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQD-FEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
K+KVY+L +LEP L T + + + EF+ +L C ++LQ + +A++ PL
Sbjct: 138 KQKVYLLMELEPSEKLAANTLFAGESGVDAEFISILRAACLKYLQ-DKANSASHIADPLE 196
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD------ 149
++ + + +E+ +FIT+ I V ++ +D++ +L+ L F G++E + D
Sbjct: 197 RRQASYVSCEEIHRFITNTKICTVAMTVQDVQCVLDVLKFGGELETRICSETLDQGTSFG 256
Query: 150 -MYRAVSPYFAVTGLSTSPCGVC 171
+YR + V L++ PC VC
Sbjct: 257 MLYRLATQTPCVANLASIPCTVC 279
>gi|410730683|ref|XP_003980162.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
gi|401780339|emb|CCK73486.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
Length = 330
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 16/125 (12%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL--QLKREKTANNTNG--- 92
+K+YML++L+P +TGG W+ + + +VEF++ L +RF+ +NG
Sbjct: 142 RKIYMLYNLQPSIEVTGGPWFTEGELDVEFINSLLTIVWRFICGTTFPNGFKGFSNGMKE 201
Query: 93 ----PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
P+V +T E+ +FI+ G+S VEL + DIR++ E L++D K+EQ+++
Sbjct: 202 VHYSPMVKNY---STTSEILEFISGAGVSTVELHDNDIRSLCEVLVYDDKLEQVSH---- 254
Query: 149 DMYRA 153
D Y+A
Sbjct: 255 DCYKA 259
>gi|317106726|dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
Length = 235
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 30/154 (19%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ + +K YM + EP + +TGGTWY + + + F+ VL QC + +
Sbjct: 74 NIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQCKKQI------------ 121
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
++L AT + V FI G+S V L+++ I IL+ L+ D K+ ++ +
Sbjct: 122 -----EKLKVATVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFA 176
Query: 147 ----GTDMYRAVSPYFA----VTGLSTSPCGVCP 172
G Y+++ + + +++ PCGVCP
Sbjct: 177 SIPVGKVCYKSIGKGSSGDPKIGAMASIPCGVCP 210
>gi|323447055|gb|EGB03019.1| hypothetical protein AURANDRAFT_34609 [Aureococcus anophagefferens]
gi|323454934|gb|EGB10803.1| hypothetical protein AURANDRAFT_77764 [Aureococcus anophagefferens]
Length = 297
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
KK+YM +DL P R ++GG WY DQ+F+ EFV + + +++Q + T + +G L
Sbjct: 136 KKLYMAYDLVPTREVSGGPWYTDQEFDHEFVGAIKKIVVKYVQSVQTSTLDEIHGALERS 195
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG---TDMYRAV 154
GI+ V LS D++ +++TLL D K+E+ + Y+
Sbjct: 196 -----------------GIATVPLSVADVKLVIDTLLCDSKLEEFTAVTAASKASRYKIA 238
Query: 155 SPYFAVTGLSTSPCGVCPD 173
P V + P G P+
Sbjct: 239 KPAVDVAWVGEVPAGCVPE 257
>gi|50555584|ref|XP_505200.1| YALI0F09295p [Yarrowia lipolytica]
gi|49651070|emb|CAG78007.1| YALI0F09295p [Yarrowia lipolytica CLIB122]
Length = 282
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 23/143 (16%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML++L+P LTGG W+ D + + EFVD+L Y + + NTN L A
Sbjct: 132 RKMYMLYNLQPSAELTGGPWFSDAELDSEFVDLLLDVVYHYCE-------ENTNLALGAN 184
Query: 98 RLACATP---KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN-----NIDGTD 149
A P ++++FI D +S+VEL E IR + E L++D ++E+ ++G D
Sbjct: 185 ----APPVHVTDIKQFIVDQEVSRVELDEGHIRILCEVLVYDDRLERCKAGYKATLNG-D 239
Query: 150 MYRAVSPYFAVTGLSTSPCGVCP 172
+ P A T S CG CP
Sbjct: 240 LPDEELPKDAYT---ESVCGQCP 259
>gi|353238962|emb|CCA70891.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Piriformospora indica DSM 11827]
Length = 468
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-EKTANNTNGPLVA 96
+K+YMLF L P +TGG WY +Q+F+ EFV+++ +Q Y F+ K K PL
Sbjct: 141 RKMYMLFHLTPSSEVTGGVWYHEQEFDQEFVNIMLEQIYGFIASKSLPKPTPRCARPLYP 200
Query: 97 QRLACATPKEVR--KFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
+ A P R +I IS V+L ED+ +L L FDG IE++
Sbjct: 201 RSEAHRYPSLTRIADWIRKNPISDVKLKPEDVEPLLRVLEFDGLIEKL 248
>gi|448117225|ref|XP_004203204.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384072|emb|CCE78776.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML++L+P +TGG W+ D + + EF+D L + +RF+ K T P V
Sbjct: 137 RKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLKVVWRFIASKSYPTVFQAPSPNVNI 196
Query: 98 RLAC--------ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI 145
A A+ + FI + I+ V+L+ D+R++ E L++D KIE I ++
Sbjct: 197 VQASFPTTHNGFASLSSIVDFIANANITTVDLAINDVRSLCEVLVYDDKIEPIEHM 252
>gi|402221227|gb|EJU01296.1| hypothetical protein DACRYDRAFT_52685 [Dacryopinax sp. DJM-731 SS1]
Length = 503
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREK---TANNTNGPL 94
+K YMLF+L+P LTGG W+ D + +V F++ L Q Y F++ K ++
Sbjct: 145 RKTYMLFNLKPSVELTGGPWFNDNELDVGFIEGLLQAVYTFIEKKVNTQTFVGDDYQVWP 204
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
++ T +VR+F+ G+++V+L +E ++++L+ L++DGKIE + G
Sbjct: 205 TSRTDKYPTLADVRRFVHGSGLTEVKLEDEHVKSLLDVLVYDGKIESLPGSGG 257
>gi|403418720|emb|CCM05420.1| predicted protein [Fibroporia radiculosa]
Length = 494
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ---LKREKTAN---NTN 91
+K+YML+ L+P +TGG WY D + + EF+ +L C RF++ L ++K+++ + N
Sbjct: 137 RKIYMLYHLDPSVEMTGGPWYTDNELDTEFIKLLCSACLRFIRDRTLPKQKSSDGDSSRN 196
Query: 92 GPL--VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
PL ++ T ++ F+ I++ +LS E + +L L+ DG+IE+I
Sbjct: 197 QPLYPISGSPTYPTAHQILTFLGKSRITETQLSVEHVEMLLNVLILDGEIERI 249
>gi|336372678|gb|EGO01017.1| hypothetical protein SERLA73DRAFT_167202 [Serpula lacrymans var.
lacrymans S7.3]
Length = 481
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ----LKREKTANNTNGP 93
+K+YML LEP LTGG WY D + + EF+ +L+ C +++ K +K + + P
Sbjct: 138 RKIYMLAHLEPSVELTGGPWYTDNELDTEFIKLLSTACLHYIRDRSFPKSKKDRSAQDQP 197
Query: 94 LVAQRLACATPK--EVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
L A A A P +++ F++ I++ +L+ E + +L L+ DG++E+I
Sbjct: 198 LYAIGAAPAYPNALQIQHFLSKSKITETQLNVEHVEMLLNVLVLDGEVEKI 248
>gi|68473450|ref|XP_719283.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
gi|68473689|ref|XP_719169.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46440974|gb|EAL00275.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46441094|gb|EAL00394.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
Length = 330
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRF-----LQLKREKTANNTNG 92
+K+YML++L+P +TGG W+ D + + EF++ L + C+RF + +K E+ N
Sbjct: 140 RKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIVGKTMYIKDEEADNEDIN 199
Query: 93 PL---VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI-NNIDGT 148
PL ++ +FI + I+ VEL DIR++ + L++D +IE++ N + +
Sbjct: 200 PLQTTYHNHHPGVNLDQLVEFINNSNITSVELGINDIRSLCDVLIYDDRIEEVGGNQENS 259
Query: 149 DMYRA 153
+++A
Sbjct: 260 GIFKA 264
>gi|401623803|gb|EJS41887.1| rpc34p [Saccharomyces arboricola H-6]
Length = 317
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-------LKREKTANNT 90
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ K + N
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGPNK 204
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
N +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ + D
Sbjct: 205 NAFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH----DC 260
Query: 151 YRA 153
YR
Sbjct: 261 YRV 263
>gi|238883048|gb|EEQ46686.1| hypothetical protein CAWG_05049 [Candida albicans WO-1]
Length = 330
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRF-----LQLKREKTANNTNG 92
+K+YML++L+P +TGG W+ D + + EF++ L + C+RF + +K E+ N
Sbjct: 140 RKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIVGKTMYIKDEEADNEDIN 199
Query: 93 PL---VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
PL ++ +FI + I+ VEL DIR++ + L++D +IE++
Sbjct: 200 PLQTTYHNHHPGVNLDQLVEFINNSNITSVELGINDIRSLCDVLIYDNRIEEV 252
>gi|255720276|ref|XP_002556418.1| KLTH0H12738p [Lachancea thermotolerans]
gi|238942384|emb|CAR30556.1| KLTH0H12738p [Lachancea thermotolerans CBS 6340]
Length = 310
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTNGP--- 93
+K+YML++L+P +TGG W+ D + +VEF++ L +RF+ + NN G
Sbjct: 145 RKIYMLYNLQPSIEVTGGPWFTDSELDVEFINSLLTIVWRFVSERTYPNGFNNFTGGREV 204
Query: 94 -LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143
A AT ++ +FI ++ VELS DIR++ + L++D K+E+++
Sbjct: 205 LYAAHVNNFATTDDILEFIISAKVANVELSTADIRSLCQVLVYDNKLEKVS 255
>gi|256273367|gb|EEU08305.1| Rpc34p [Saccharomyces cerevisiae JAY291]
Length = 317
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 17/126 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ E T N NG
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFI---SENTFPNGFKNFENG 201
Query: 93 PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
P A +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ +
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH--- 258
Query: 148 TDMYRA 153
D YRA
Sbjct: 259 -DCYRA 263
>gi|448119652|ref|XP_004203785.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384653|emb|CCE78188.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT---ANNTNGPL 94
+K+YML++L+P +TGG W+ D + + EF+D L + +RF+ K T A ++N +
Sbjct: 137 RKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLKVVWRFIASKSYPTVFQAPSSNVNI 196
Query: 95 VAQRLAC-----ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI 145
V A+ + FI + I+ V+L+ D+R++ E L++D KIE + ++
Sbjct: 197 VQASFPTTHNGFASLASIVDFIANANITTVDLAINDVRSLCEVLVYDEKIEPVEHM 252
>gi|406606568|emb|CCH42067.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 300
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML+ L P +TGG W+ D + + EFVD L +RF+ K N + L
Sbjct: 139 RKIYMLYHLTPSIEVTGGPWFTDGELDSEFVDSLLTIVWRFVTNKTFPNIFNDDANLKKN 198
Query: 98 RLACA------TPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
+L A T +E+ +FIT ++ EL E DIR++ + L++D K+E++N D Y
Sbjct: 199 QLYAANYKNYSTLEEILEFITRSQVTSEELIENDIRSLCQVLVYDDKLEKLN----LDCY 254
Query: 152 RAVSPYFAVTGL 163
R S Y +V L
Sbjct: 255 R--STYQSVVDL 264
>gi|241956760|ref|XP_002421100.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223644443|emb|CAX41258.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 330
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRF-----LQLKREKTANNTNG 92
+K+YML++L+P +TGG W+ D + + EF++ L + C+RF + +K E +
Sbjct: 140 RKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIVGKTMYIKDENADTEDSN 199
Query: 93 PL---VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI-NNIDGT 148
PL ++ +FI + I+ VEL DIR++ + L++D +IE++ N + +
Sbjct: 200 PLQTTYHNHHPGVNLDQLVEFINNSNITSVELGINDIRSLCDVLIYDDRIEEVGGNQENS 259
Query: 149 DMYRA 153
+++A
Sbjct: 260 GIFKA 264
>gi|392590466|gb|EIW79795.1| hypothetical protein CONPUDRAFT_144945 [Coniophora puteana
RWD-64-598 SS2]
Length = 562
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-EKTANNTNG---- 92
+K+YML LEP LTGG WY D + + EF+ +L+ C +++ + K A TN
Sbjct: 138 RKIYMLAHLEPSVELTGGPWYTDNELDTEFIKLLSAACLHYIRERSFPKPAKRTNKDRPD 197
Query: 93 --PLVAQRLACATP--KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
L A A A P +E++ F++ I+ EL E + +L+ L DG+IE+I
Sbjct: 198 QFRLYAPGAAPAYPSSEEIQHFLSKRKIANTELGVEHVEMLLKVLELDGEIEKI 251
>gi|366999516|ref|XP_003684494.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
gi|357522790|emb|CCE62060.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
Length = 360
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 73/123 (59%), Gaps = 11/123 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR----EKTANNTNGP 93
+K+YML++L+P +TGG W+ D + +VEF++ L +R++ K K +N NG
Sbjct: 149 RKIYMLYNLQPSIDITGGPWFTDSELDVEFINSLLTIVWRYVSEKSFPNGFKNFSNENGK 208
Query: 94 --LVAQRLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
L A + +T +E+ FI++ ++ VEL+ ++IR++ E L++D K+E+ + D
Sbjct: 209 KTLYAPHVKNYSTAEEILNFISNAQVANVELNIDNIRSLCEVLVYDDKLEKTQH----DC 264
Query: 151 YRA 153
YR
Sbjct: 265 YRV 267
>gi|403217351|emb|CCK71845.1| hypothetical protein KNAG_0I00540 [Kazachstania naganishii CBS
8797]
Length = 335
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-------LKREKTANNT 90
+K+YML++L+P +TGG W+ + + +VEF++ L +RF+ + T +
Sbjct: 158 RKIYMLYNLQPSVEVTGGPWFTEGELDVEFINSLLTIVWRFVAENTFPNGFGDDTTTQSR 217
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+ V + ++ E+ +FI+ ++ V+L DIR + E LL+D K+EQ G D
Sbjct: 218 DVQYVPGHKSYSSTGEILEFISASQVTNVQLRASDIRALCEVLLYDDKLEQT----GHDC 273
Query: 151 YRA 153
YRA
Sbjct: 274 YRA 276
>gi|255732355|ref|XP_002551101.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
gi|240131387|gb|EER30947.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
Length = 331
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 11/127 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN-------NT 90
+K+YML++L+P +TGG W+ D + + EF+D L + C+RF+ K N ++
Sbjct: 139 RKIYMLYNLQPSIDVTGGPWFTDSELDTEFIDTLVEVCWRFIVAKTIYIQNPESEDYDSS 198
Query: 91 NGPLVAQRLACATP---KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI-NNID 146
+ PL ++ +I I+ VEL DIR++ + L++D +IE++ N +
Sbjct: 199 SNPLQTSHHNHHRGVDLDQIVDYINSSNITSVELGINDIRSLCDVLIYDDRIEEVGGNQE 258
Query: 147 GTDMYRA 153
+ ++RA
Sbjct: 259 NSGIFRA 265
>gi|363750075|ref|XP_003645255.1| hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888888|gb|AET38438.1| Hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
Length = 315
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-NNTNGPLVA 96
+K+YML++L+P +TGG W+ D + +VEF++ L +R + NN NG
Sbjct: 145 RKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRHTSERTYPNGFNNFNGSRGK 204
Query: 97 QRLAC------ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+ L +T E+ +FI+ +S V+LS+ DIR++ E L++D K+E++ D
Sbjct: 205 ELLYTHNVKNYSTTDEILEFISGARVSTVDLSKPDIRSLCEVLVYDDKLEKV----AFDC 260
Query: 151 YRA 153
YR
Sbjct: 261 YRV 263
>gi|151944532|gb|EDN62810.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
Length = 317
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ E T N NG
Sbjct: 145 RKIYMLYSLQPSVEITGGPWFTDGELDIEFINSLLTIVWRFI---SENTFPNGFKNFENG 201
Query: 93 PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
P A +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ +
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH--- 258
Query: 148 TDMYRA 153
D YR
Sbjct: 259 -DCYRV 263
>gi|323307394|gb|EGA60670.1| Rpc34p [Saccharomyces cerevisiae FostersO]
gi|323346740|gb|EGA81021.1| Rpc34p [Saccharomyces cerevisiae Lalvin QA23]
Length = 295
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ E T N NG
Sbjct: 123 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFIS---ENTFPNGFKNFENG 179
Query: 93 PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
P A +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ +
Sbjct: 180 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH--- 236
Query: 148 TDMYRA 153
D YR
Sbjct: 237 -DCYRV 241
>gi|150865268|ref|XP_001384413.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
gi|149386524|gb|ABN66384.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
Length = 322
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA----NNTNGP 93
+K+YML++L+P +TGG W+ D + + EF+D L +RF K TA ++ N P
Sbjct: 138 RKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLTVIWRFTASKTYPTAFQPPSSANNP 197
Query: 94 LVAQRLACATP----KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149
+ A + T + +FI I+ ++L DIR++ + L++D K+E I++ TD
Sbjct: 198 IQASYPSNHTGFVNLDAIMEFIIANKITNIDLGLNDIRSLCDVLVYDDKLELISHT--TD 255
Query: 150 MYRA 153
Y+A
Sbjct: 256 TYKA 259
>gi|303390946|ref|XP_003073703.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302851|gb|ADM12343.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
Length = 235
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
+ +KVY+L+D P +TGG W+QD D +VE V + + FL+ ++ + P
Sbjct: 119 NNRKVYVLYDQVPSEEITGGMWFQDNDVDVECVTKILEIILLFLE---KRLGDRLELPEY 175
Query: 96 AQRLACATPK--EVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
+ PK E+ ++ DLGI V L ED+ T+++ L+FDG++E++++ YRA
Sbjct: 176 EE-----NPKLEEIMNYVKDLGILSVPLRLEDLETLVDILVFDGRVEKLHS-GPIVRYRA 229
Query: 154 VSPY 157
+ PY
Sbjct: 230 LRPY 233
>gi|323352456|gb|EGA84957.1| Rpc34p [Saccharomyces cerevisiae VL3]
Length = 317
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ E T N NG
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFIS---ENTFPNGFKNFENG 201
Query: 93 PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
P A +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ +
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH--- 258
Query: 148 TDMYRA 153
D YR
Sbjct: 259 -DCYRV 263
>gi|6324330|ref|NP_014400.1| Rpc34p [Saccharomyces cerevisiae S288c]
gi|417698|sp|P32910.1|RPC6_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName: Full=C34;
AltName: Full=DNA-directed RNA polymerase III 36 kDa
polypeptide
gi|4379|emb|CAA45278.1| DNA dependent RNA polymerase c(III) subunit c34 [Saccharomyces
cerevisiae]
gi|496721|emb|CAA54572.1| RNA polymerase III [Saccharomyces cerevisiae]
gi|1302473|emb|CAA96279.1| RPC34 [Saccharomyces cerevisiae]
gi|190408995|gb|EDV12260.1| RNA polymerase III 34 kDa subunit [Saccharomyces cerevisiae
RM11-1a]
gi|207341597|gb|EDZ69606.1| YNR003Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148951|emb|CAY82195.1| Rpc34p [Saccharomyces cerevisiae EC1118]
gi|285814651|tpg|DAA10545.1| TPA: Rpc34p [Saccharomyces cerevisiae S288c]
gi|323331758|gb|EGA73171.1| Rpc34p [Saccharomyces cerevisiae AWRI796]
gi|323335724|gb|EGA77005.1| Rpc34p [Saccharomyces cerevisiae Vin13]
gi|349580938|dbj|GAA26097.1| K7_Rpc34p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763395|gb|EHN04924.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296990|gb|EIW08091.1| Rpc34p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 317
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ E T N NG
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFI---SENTFPNGFKNFENG 201
Query: 93 PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
P A +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ +
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH--- 258
Query: 148 TDMYRA 153
D YR
Sbjct: 259 -DCYRV 263
>gi|449546101|gb|EMD37071.1| hypothetical protein CERSUDRAFT_155527 [Ceriporiopsis subvermispora
B]
Length = 481
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 16/138 (11%)
Query: 19 DRSLTGGTWYQDQDFEASK------KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLN 72
DRSL T Q Q +A K +K+YML LEP +TGG WY D + + EF+ +L
Sbjct: 114 DRSLKSLT--QKQLIKAVKSVKFPTRKIYMLSHLEPSVEMTGGPWYTDNELDTEFIKLLC 171
Query: 73 QQCYRFLQLKR-EKTANNTNGPLVAQRL-------ACATPKEVRKFITDLGISKVELSEE 124
C RF++ + KT + + P Q L + T +++ F+ I++ +L+ E
Sbjct: 172 SACLRFIRDRSTPKTKASEDAPARTQPLFSISAAPSYPTAQQILTFLGKSRITETQLAIE 231
Query: 125 DIRTILETLLFDGKIEQI 142
+ ++L L+ DG++E++
Sbjct: 232 HVESLLNVLVLDGEVEKV 249
>gi|366988061|ref|XP_003673797.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
gi|342299660|emb|CCC67416.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
Length = 339
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 12/116 (10%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYR------FLQLKREKTANNTN 91
+K+YML++L+P +TGG W+ + + +VEF++ L +R F + +N+
Sbjct: 163 RKIYMLYNLQPSIEVTGGPWFTEGELDVEFINSLITIVWRVVCGTTFPNGFKGFNSNHRA 222
Query: 92 GPLVAQ-----RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
G V + C T +E+ +FIT+ +S VELSE DIR++ E L++D K+E++
Sbjct: 223 GSKVLHYSPEVKNYC-TTEEILEFITNAEVSTVELSESDIRSLCEVLVYDDKLEKV 277
>gi|365758618|gb|EHN00452.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 232
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-------LKREKTANNT 90
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ K + N
Sbjct: 60 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGPNR 119
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
N +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E+ + D
Sbjct: 120 NVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKATH----DC 175
Query: 151 YRA 153
YR
Sbjct: 176 YRV 178
>gi|340518110|gb|EGR48352.1| predicted protein [Trichoderma reesei QM6a]
Length = 352
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 38/177 (21%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ + P TGG WY DQD + F++ L + + F +KR+ T ++T
Sbjct: 150 KNVEHPNKKMYIKASIRPSDRATGGPWYTDQDLDEAFIEDLQRVVFDF--IKRQSTYHST 207
Query: 91 NG-------------PLVAQRLACATPKEVRKFITDLGIS-KVELSEEDIRTILETLLFD 136
+G PL A A T +++ + ++ GI+ LSE D++ +++ L++D
Sbjct: 208 HGGASRAASSKPALLPLPAGYTAYPTVRDIARLLSSSGITNNTILSEGDVKKLVDVLVWD 267
Query: 137 GKIEQINNIDGTDMY---------------------RAVSPYFAVTGLSTSPCGVCP 172
+E + + G Y RA P V+ L+ +PCG CP
Sbjct: 268 NLVEPV-KVAGRVGYRVSRIARQSVESWAGRDDPTGRAGGPELYVSPLTEAPCGRCP 323
>gi|254574058|ref|XP_002494138.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|238033937|emb|CAY71959.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|328354043|emb|CCA40440.1| DNA-directed RNA polymerase III subunit C34 [Komagataella pastoris
CBS 7435]
Length = 317
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 24/131 (18%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-------------- 83
+K+YML+ L P +TGG W+ D + + EF+D L +RF+ K
Sbjct: 145 RKIYMLYHLTPSIEVTGGPWFTDSELDTEFIDSLLIIIWRFIANKTYPNLFGTEGNKAQL 204
Query: 84 -EKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
E + N P VAQ + KFI GI+ +EL+++D+R++ + L ++ KIE++
Sbjct: 205 YEFSVGLNNAPDVAQ---------INKFIRGSGITNIELTDDDVRSLCDVLCYEEKIEKL 255
Query: 143 NNIDGTDMYRA 153
D Y+
Sbjct: 256 EKFGKVDSYKV 266
>gi|291001191|ref|XP_002683162.1| predicted protein [Naegleria gruberi]
gi|284096791|gb|EFC50418.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 40 VYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRL 99
VY+ +EP + +TGG WY D F E VD L + +L+ K ++T
Sbjct: 101 VYIASHIEPSKEITGGIWYIDGKFNSELVDKLRTETITYLEKKPKRT------------- 147
Query: 100 ACATPKEVRKFITDLG-ISKVELSEEDIRTILETLLFDGKIEQI---NNIDGTDMYR-AV 154
EV + I L I V+L +D++ +++TL+FDG +E+I NN+ +YR A+
Sbjct: 148 -----HEVLEHIKSLAIIDHVDLGSDDMQQVIDTLVFDGFLEKIIDNNNVGNQSLYRVAL 202
Query: 155 SPYFAVTGLSTSPCGVCP 172
S PC CP
Sbjct: 203 SSVSTENAFVDIPCSTCP 220
>gi|50306581|ref|XP_453264.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642398|emb|CAH00360.1| KLLA0D04532p [Kluyveromyces lactis]
Length = 363
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 69/113 (61%), Gaps = 7/113 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT----NG- 92
+K+YML++L+P +TGG W+ D + +VEF++ L +RF + N NG
Sbjct: 196 RKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRFTAERTYPNGFNNFSDENGR 255
Query: 93 -PLVAQRL-ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143
L + + + T +E+ +FI++ GIS +L++ DIR++ E L++D K+E+++
Sbjct: 256 DALYSSNVKSYTTIEEILEFISESGISTEQLTKPDIRSLCEVLVYDDKLEKVS 308
>gi|392560402|gb|EIW53585.1| hypothetical protein TRAVEDRAFT_134281 [Trametes versicolor
FP-101664 SS1]
Length = 498
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 14/115 (12%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNG----- 92
+K+YML LEP +TGG WY D + + EF+ +L C RF+ R+K+A G
Sbjct: 138 RKIYMLAHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLRFI---RDKSAPKQKGGDSES 194
Query: 93 -----PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
P+ A + T +++ F++ I++ +LS E + +L L+ DG +E++
Sbjct: 195 SNLLYPISASP-SYPTAQQLLAFLSKSRITETQLSVEHVEMLLNVLVLDGDVERV 248
>gi|388582803|gb|EIM23107.1| hypothetical protein WALSEDRAFT_44075 [Wallemia sebi CBS 633.66]
Length = 528
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-LKREKTANNTNGPLVA 96
+K+YML + P LTGG WY D + + EFV L +++ K +N
Sbjct: 142 RKIYMLASISPSVELTGGPWYTDNELDTEFVGQLKSAVLSYVRGCTYPKIKDNIKPIYAI 201
Query: 97 QRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
++ ++V K+++ G+++VEL E I+++LE L+FDG++E++
Sbjct: 202 SKVDYPNVRKVHKWLSKSGLTQVELGLEHIQSLLEVLMFDGEVERL 247
>gi|156841355|ref|XP_001644051.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156114685|gb|EDO16193.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 321
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 13/114 (11%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML++L+P +TGG W+ D + +VEF++ L +RF+ EKT N + G
Sbjct: 147 RKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIIWRFVS---EKTFPNGFKNFSEG 203
Query: 93 PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ 141
+Q A +T +E+ FI+ ++ VELS ++IR + E L+FD K+E+
Sbjct: 204 FKSSQIYAPNVKNYSTVEEILVFISKAQVANVELSTDNIRALCEVLVFDDKLEK 257
>gi|170095840|ref|XP_001879140.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645508|gb|EDR09755.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 462
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-LKREKTANNTNGPL-- 94
+K+YML LEP +LTGG WY D + + EF+ L + C++F+ L K G L
Sbjct: 138 RKIYMLEGLEPSIALTGGPWYTDNELDTEFIQNLTEACFKFISDLSFPKRKEGAPGALYP 197
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
++ T + +R + +++ +L+ E + +L L+ DGKIE++
Sbjct: 198 ISNAPQYPTAQHIRNSLRKAQLTETDLTVEHVEMLLNVLVLDGKIEKL 245
>gi|389746352|gb|EIM87532.1| hypothetical protein STEHIDRAFT_168250 [Stereum hirsutum FP-91666
SS1]
Length = 544
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL------QLKREKTANNTN 91
+K+YM+ LEP LTGG WY D + + EF+ +L C RF+ + KR + ++
Sbjct: 141 RKLYMMAHLEPSVELTGGPWYTDGELDTEFIKLLCSACLRFIRDRSFPKQKRSEDMPESS 200
Query: 92 GPL--VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
PL ++ + + K V F+ I++ +L+E + ++L L+ DG +E++
Sbjct: 201 QPLFSISNSPSYPSSKHVLSFLEKSRITETQLTEAHVESLLNVLVLDGDVEKL 253
>gi|401837479|gb|EJT41403.1| RPC34-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 317
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-------LKREKTANNT 90
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ K + N
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGPNR 204
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
N +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E+ + D
Sbjct: 205 NVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKATH----DC 260
Query: 151 YRA 153
YR
Sbjct: 261 YRV 263
>gi|313224681|emb|CBY20472.1| unnamed protein product [Oikopleura dioica]
Length = 301
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
S K+ Y L+D+ PD ++TGG +Y + F+ E VD + L + + P
Sbjct: 142 GSPKQKYFLYDVTPDHTVTGGAFYDNDRFDKELVDGIMHILKPHLTQIMDAQKQSDTHPS 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ R A TP ++ ++ + K L+E D R +L+ L+ +G + G + + +
Sbjct: 202 LLFRAASVTPGQIADWLNEKRFVKFLLTETDCRQLLDALVLEG----FADRRGDEYHAQL 257
Query: 155 S--PYFAVTGLSTSPCGVCP 172
S P A +GLS +PCGVCP
Sbjct: 258 SDKPLVA-SGLSFTPCGVCP 276
>gi|299747323|ref|XP_001836956.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
gi|298407467|gb|EAU84573.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
Length = 478
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-LKREKTANNTNGPLVA 96
+K+YML LEP +LTGG WY D + + EF+ L CY+F+ + K + G L
Sbjct: 140 RKIYMLEGLEPSIALTGGPWYTDNELDTEFIQHLMDACYKFISDISFPKRRDAPEGALFP 199
Query: 97 QRLACATP--KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
A P + +R + +++ +LS E + ++L L+ DGKIE + GT ++ +
Sbjct: 200 ISNAPDYPSAQHIRNSLRKARLTETDLSVEHVESLLNVLVLDGKIEALPAF-GTSLWDSA 258
Query: 155 S 155
+
Sbjct: 259 A 259
>gi|359497031|ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ ++ +K YM + EP + LTGG WY + + + E++ +L + C R L
Sbjct: 76 NIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVRVL------------ 123
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
+L AT + + + I G+ E S + I IL L+ D +I ++ +
Sbjct: 124 -----SKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFS 178
Query: 147 ----GTDMYRAVSPYF------AVTGLSTSPCGVCP 172
G YR + + +++ PCGVCP
Sbjct: 179 SIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCP 214
>gi|359497533|ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ ++ +K YM + EP + LTGG WY + + + E++ +L + C R L
Sbjct: 76 NIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVL------------ 123
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
+L AT + + + I G+ E S + I IL L+ D +I ++ +
Sbjct: 124 -----SKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFS 178
Query: 147 ----GTDMYRAVSPYF------AVTGLSTSPCGVCP 172
G YR + + +++ PCGVCP
Sbjct: 179 SIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCP 214
>gi|302697035|ref|XP_003038196.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
gi|300111893|gb|EFJ03294.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
Length = 483
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ-LKREKTANN 89
Q + +K+YML +EP +LTGG WY D + +V F++ L + C + ++ + + + +
Sbjct: 131 QSVQHPTRKIYMLEGVEPSVALTGGPWYTDNELDVAFINTLIRACLKIVRDMSSPRQSAD 190
Query: 90 TNGPL--VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
G L + + T +++R + ++ +LSEE + ++L L+ DG+IE+I
Sbjct: 191 KQGALFPIGYQPEYPTAQKIRSALQRAHLTDTDLSEEHVESLLNVLILDGEIERI 245
>gi|296087021|emb|CBI33284.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ ++ +K YM + EP + LTGG WY + + + E++ +L + C R L
Sbjct: 137 NIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVL------------ 184
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
+L AT + + + I G+ E S + I IL L+ D +I ++ +
Sbjct: 185 -----SKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFS 239
Query: 147 ----GTDMYRAVSPYF------AVTGLSTSPCGVCP 172
G YR + + +++ PCGVCP
Sbjct: 240 SIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCP 275
>gi|367010832|ref|XP_003679917.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
gi|359747575|emb|CCE90706.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
Length = 309
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML++L+P +TGG W+ D + +VEF++ L +RF+ + +
Sbjct: 145 RKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRFVSERTYPNGFKNFSQGQKE 204
Query: 98 RLAC------ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
RL +T +E+ FI+ ++ VELS +IR++ + L++D K+E++ +
Sbjct: 205 RLYAPSVNNHSTTQEILDFISAAQVANVELSTANIRSLCDVLVYDDKLEKVTH 257
>gi|281202585|gb|EFA76787.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 301
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 28/152 (18%)
Query: 30 DQDFEASKKKVYMLFDLEPDRSLTGGTWY-QDQDFEVEFVDVLNQQCYRFLQLKREKTAN 88
D+ A +KKVYM +++EP R +TGG+ Y Q + E + + C F+ K
Sbjct: 139 DRKAIAGRKKVYMAYNVEPSREVTGGSLYGGSQSLDEELISAMKLSCNSFISNK------ 192
Query: 89 NTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
A E+ ++ G + +L+ EDI+T++ +L++DG IE++ + T
Sbjct: 193 -----------GAADLTEIMNYMKKTG--EQDLTMEDIQTLVNSLIYDGLIEEMRDTRST 239
Query: 149 DMY-RAVSPYFAVT-------GLSTSPCGVCP 172
+MY R + + T + PCGVCP
Sbjct: 240 NMYGRRMGVIYKPTKTIIPENHFTKMPCGVCP 271
>gi|449461094|ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cucumis sativus]
gi|449506569|ref|XP_004162785.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cucumis sativus]
Length = 243
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 32/157 (20%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
Q ++ KK Y+ D EP + LTGG WY+D + + ++++ L Q C R +Q K+ T
Sbjct: 79 QHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGI 138
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID---- 146
V F G KVELS E I I+ L+ D ++ ++ +
Sbjct: 139 ----------------VESF-KQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEF 181
Query: 147 -----GTDMYRAVSPYFAVTG------LSTSPCGVCP 172
G Y+ + + G +++ PCGVCP
Sbjct: 182 EFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCP 218
>gi|401827607|ref|XP_003888096.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
gi|392999296|gb|AFM99115.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
Length = 236
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
+ +KVY+L+D P +TGG W+QD D + E V + + FLQ + + P +
Sbjct: 120 NNRKVYVLYDQVPSEEITGGMWFQDNDVDAECVIRVLEIIQLFLQ------KSLSGKPGL 173
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ T +E+ ++ +L I V L ED++T+++ L+FDGK+E++++ T YRA+
Sbjct: 174 PEYEDNPTLEEIMNYVKNLNILSVPLRIEDLKTLVDILVFDGKVEKLHS-GATTRYRAL 231
>gi|225442989|ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ ++ +K YM + EP + LTGG WY + + + E++ +L + C + L
Sbjct: 76 NIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVL------------ 123
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
+L AT + + + I G+ E S + I IL L+ D +I ++ +
Sbjct: 124 -----SKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFS 178
Query: 147 ----GTDMYRAVSPYFA------VTGLSTSPCGVCP 172
G YR + + +++ PCGVCP
Sbjct: 179 SIPIGAVCYRCTNKGGLGGGGPKIGAMASIPCGVCP 214
>gi|294654533|ref|XP_456595.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
gi|199428958|emb|CAG84551.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
Length = 323
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA-----NNTN- 91
+K+YML++L+P +TGG W+ D + + EF+D L +RF+ K TA +N N
Sbjct: 138 RKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLTVIWRFVASKTYPTAFQTPSSNNNI 197
Query: 92 --GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149
A + +FIT I+ ++L+ D+R++ + L+ D K+E I + + D
Sbjct: 198 YQSSYPANHTGFVNLDTIIEFITSNNITNIDLAINDVRSLCDVLINDDKLELIKHTN--D 255
Query: 150 MYRA 153
+++A
Sbjct: 256 IFKA 259
>gi|393244532|gb|EJD52044.1| hypothetical protein AURDEDRAFT_111548 [Auricularia delicata
TFB-10046 SS5]
Length = 464
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL--V 95
+++Y+L LEP +TGG WY D + + EF+ +L C RF+ + + PL +
Sbjct: 137 RRLYILSHLEPSVEVTGGPWYTDHELDTEFIRMLLAACLRFISDRSFPKDESDAKPLFPI 196
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVS 155
+Q + V F+T I++ EL + + ++L+ L++DG IE++ G A++
Sbjct: 197 SQAPTYPSATNVLSFLTKSRITETELGIDHVESLLDVLVYDGLIERLPAFGGISWSTAMA 256
>gi|342321651|gb|EGU13583.1| Hypothetical Protein RTG_00013 [Rhodotorula glutinis ATCC 204091]
Length = 581
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK-------- 82
+ +A +K+YML ++P LTGG W+ D + + E V+ L + +FLQ K
Sbjct: 151 KSVKAPTRKIYMLAGIQPSVELTGGPWFTDNELDTELVEQLKKIVQKFLQQKSIPPSIQI 210
Query: 83 REKTANNTNGPLVAQRL-----ACATP-----KEVRKFITDLGISKVELSEEDIRTILET 132
+A+ ++ Q+ ATP +V FIT LG + VEL E + +L+
Sbjct: 211 HAPSADPSSSTSQTQKFRPIYPTTATPFLPSVDDVLSFITQLGATVVELHPEHVEALLDL 270
Query: 133 LLFDGKIEQI 142
+++DG +E++
Sbjct: 271 MIYDGVVEKV 280
>gi|430813513|emb|CCJ29148.1| unnamed protein product [Pneumocystis jirovecii]
Length = 322
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRF-LQLKREKTANNTNGPLVA 96
+K++M++DL P LTGG W+ DQ+ ++EF++ L Y++ L K+ + P +
Sbjct: 164 RKIFMIYDLVPSIELTGGPWFTDQEMDLEFIERLQGALYKYILSHSYPKSQDTLFSPSYS 223
Query: 97 QRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSP 156
L T +++ ++ + GI++V+L D+ +L L++D KIE N R V+
Sbjct: 224 GYL---TAEQIHSWLKNSGITQVDLELSDVVNLLNVLVYDRKIEYCQNGTAFKALRRVN- 279
Query: 157 YFAVTGLSTSPCGVC 171
+ + + + C C
Sbjct: 280 HKNIHDFTETACESC 294
>gi|164660610|ref|XP_001731428.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
gi|159105328|gb|EDP44214.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
Length = 507
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML+DL P L+GG WY D + + F+ L+ C RF+Q K ++ A
Sbjct: 145 RKIYMLYDLTPSIELSGGPWYTDNELDTGFIHELSMACLRFIQSKSWPKDGRSSALFPAS 204
Query: 98 RLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
V +++ ++ EL E + +LE L++D +IE+I
Sbjct: 205 HTHLFPNVHTVHRYLKQARLTDTELEPEHVAALLELLIYDQQIEKI 250
>gi|407919972|gb|EKG13191.1| RNA polymerase Rpc34 [Macrophomina phaseolina MS6]
Length = 267
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 54/185 (29%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ----------------L 81
+K+YML L P ++GG W+ D + ++E ++ ++ F++ +
Sbjct: 60 RKIYMLAHLTPSEEVSGGPWHTDGELDIELIEQISTVILNFVEQNSWVEQKPQHVSKADI 119
Query: 82 KREK------TANNT-------------NGPLVAQRLA---CATPKEVRKFITDLG-ISK 118
+R+K ANNT GPL+ T + +FI G I
Sbjct: 120 RRKKEQVQRSGANNTPEPPKYRPALGRNGGPLLPHAPGYRNYPTATSILEFIEKSGVIEG 179
Query: 119 VELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYF-AVT----------GLSTSP 167
V + E D+R++LE ++FDGK+E+I G YR+V A T GL+ +P
Sbjct: 180 VVIREMDLRSLLENMVFDGKLERI----GAMGYRSVRGAMDAATDAEVAEGYGNGLTQAP 235
Query: 168 CGVCP 172
CG CP
Sbjct: 236 CGRCP 240
>gi|297743442|emb|CBI36309.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ ++ +K YM + EP + LTGG WY + + + E++ +L + C + L
Sbjct: 166 NIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVL------------ 213
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
+L AT + + + I G+ E S + I IL L+ D +I ++ +
Sbjct: 214 -----SKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFS 268
Query: 147 ----GTDMYRAVSPYFA------VTGLSTSPCGVCP 172
G YR + + +++ PCGVCP
Sbjct: 269 SIPIGAVCYRCTNKGGLGGGGPKIGAMASIPCGVCP 304
>gi|320581571|gb|EFW95791.1| RNA polymerase III subunit C34 [Ogataea parapolymorpha DL-1]
Length = 326
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVA 96
++K+YML+ L P +TGG W+ D + + +F+D L +RF+ K G V
Sbjct: 150 QRKIYMLYHLTPSIEVTGGPWFTDSELDSDFIDSLLIVIWRFVASKSYPKCFKKGGMDVE 209
Query: 97 Q-------RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI 145
Q + +E+ +FI G++ VELS DIR++ L ++ K+ Q++N+
Sbjct: 210 QYSYPVSNNHNLPSLEEISRFIGSSGVTSVELSLSDIRSLCSVLEYEEKLVQVDNL 265
>gi|422293632|gb|EKU20932.1| DNA-directed RNA polymerase III subunit RPC6 [Nannochloropsis
gaditana CCMP526]
Length = 268
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 65/107 (60%), Gaps = 9/107 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+Y+L+DLEP + +TGG WY + +F+ EF++ L++ Y F++ +R+ + ++A
Sbjct: 152 RKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPPSLG----IIAD 207
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
+ + +V+ I + VEL+ +++ I+ +L +D KIE + N
Sbjct: 208 YVRNSGVSKVKSEIKN-----VELAPGEVQLIINSLAYDMKIEPVQN 249
>gi|328873437|gb|EGG21804.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 279
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQ-DQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+A KKKVYM + +EP R LTGG+ Y Q + E ++ + C F+ K
Sbjct: 130 IDAGKKKVYMSYSMEPSRDLTGGSLYSGGQTLDQELINAMKWSCSSFISNK--------- 180
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD-- 149
A EV ++ G + +L+EEDI T+L +L++DG +E++ +
Sbjct: 181 --------GAADISEVMNYLKKQG--EKDLTEEDILTLLNSLIYDGLVEEMRDTRAKHVL 230
Query: 150 -------MYRAVSPYFAVTGLSTSPCGVCP 172
+Y+ + PCG CP
Sbjct: 231 SRKPTGIIYKPTKTKIPENHFTKMPCGNCP 260
>gi|444520451|gb|ELV13003.1| Protein transport protein Sec23B [Tupaia chinensis]
Length = 630
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 106 EVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNIDG-TDMYRAVS 155
E +K I + VELS EDI TIL TL+FDGK+E + ++DG +YRAVS
Sbjct: 110 ESKKLIKAVKSVAVELSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGHMKLYRAVS 169
Query: 156 PYFAVTGLSTSPCGVCP 172
TGL +PCG+CP
Sbjct: 170 TIIPPTGLVRAPCGLCP 186
>gi|396082216|gb|AFN83826.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
romaleae SJ-2008]
Length = 235
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN-NTNGPL 94
+ +KVY+L+D P +TGG W+QD D + E V + +QL EK N N P
Sbjct: 119 NNRKVYVLYDEVPSEEITGGIWFQDNDVDAECV----TRVLEIIQLFLEKRLNGNLELPE 174
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
A +E+ ++ +L I V L ED+ T+++ L+FDGK+E++++ T YRA+
Sbjct: 175 YEDNPAL---EEIMSYVKNLNILSVPLRAEDLETLVDILVFDGKVEKLHSGSVT-RYRAL 230
>gi|392558473|gb|EIW51661.1| hypothetical protein TRAVEDRAFT_137014 [Trametes versicolor
FP-101664 SS1]
Length = 423
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ---LKREKTAN 88
D +K Y+L L+P LTGG WY D++ + EF+ +L+ C + +Q R K
Sbjct: 132 DVRHPTRKTYILASLQPATELTGGPWYTDKELDTEFIKLLSDVCLKIVQDRSFPRVKERQ 191
Query: 89 NT-NGPLV-AQRLACATPKE-VRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
T + PL A AT ++ V+ F+ +++ L+ E + +L+ L+ DGKIE+I
Sbjct: 192 ETEHRPLYPCSHTAYATSQQHVQTFLQKSRVTETALTVEHVEMLLDVLVLDGKIEKI 248
>gi|219115902|ref|XP_002178746.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409513|gb|EEC49444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 330
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ A KK+YML+DL P LTGG WY D +F+ EF+ L R L + N
Sbjct: 178 KSVNAKSKKLYMLYDLTPSTELTGGVWYSDMEFDHEFISEL-----RNFLLSCVRRMNGG 232
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
NG T EVR+ + +S+V+L+ ++R +++TL++D
Sbjct: 233 NG---------VTLPEVREKMIQGKVSRVQLAINELRQLMQTLVYD 269
>gi|50294173|ref|XP_449498.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528812|emb|CAG62474.1| unnamed protein product [Candida glabrata]
Length = 317
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 12/123 (9%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL-----KREKTANNTNG 92
+K+YML+ L+P +TGG W+ D + +VEF++ L +RF+ N + G
Sbjct: 145 RKIYMLYHLQPSIEVTGGPWFTDSELDVEFINSLLTIVWRFVSECTYPGGFSNFQNGSQG 204
Query: 93 PLVAQRLA--CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
L A + C+ +++ +FI ++ V+L+ DIR++ E L++D K+E++ + D
Sbjct: 205 ALYAPGIKNYCSL-EDILQFIEQAQVANVQLNLGDIRSLCEVLVYDDKLERVLH----DH 259
Query: 151 YRA 153
YR
Sbjct: 260 YRV 262
>gi|19074630|ref|NP_586136.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069272|emb|CAD25740.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449330226|gb|AGE96487.1| DNA-directed RNA polymerase III 34kDa subunit [Encephalitozoon
cuniculi]
Length = 236
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK---REKTANNTNG 92
+ +KVY+L+D P +TGGTW+ D D +VE V + + FL+ RE+ +
Sbjct: 120 NNRKVYVLYDQVPSEEITGGTWFHDNDVDVECVARILEIIELFLEKNLAGREELPKYEDN 179
Query: 93 PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152
P T +++ ++ ++ I + L +D+ T+ + L+FDGK+E++++ YR
Sbjct: 180 P---------TLEDIMNYVRNVNILSIPLRLDDLETLADILVFDGKVEKLHS-GPIARYR 229
Query: 153 AVSPY 157
A PY
Sbjct: 230 AFKPY 234
>gi|356522416|ref|XP_003529842.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 229
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ + KK+ M D EP ++GG WY + + EF+D L++ C+ +
Sbjct: 75 NVQNRSKKLLMASDFEPSNEISGGEWYTEGKLDTEFIDKLSEACFSSI------------ 122
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM- 150
+RL AT + + ++I G +S+ + IL+ L+ + K++++ + D
Sbjct: 123 -----RRLKVATCEGILEWIRKAGGG---VSKGQMEQILKKLVMENKVQEVTSDGSGDFE 174
Query: 151 --------YRAVSPYFAVTGLSTSPCGVCP 172
YR V V +++ PCGVCP
Sbjct: 175 SVPVGEVCYRLVKKAAGVGAMASIPCGVCP 204
>gi|156326573|ref|XP_001618646.1| hypothetical protein NEMVEDRAFT_v1g224937 [Nematostella vectensis]
gi|156199696|gb|EDO26546.1| predicted protein [Nematostella vectensis]
Length = 265
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 11/67 (16%)
Query: 117 SKVELSEEDIRTILETLLFDGKIEQINNIDGTD-----------MYRAVSPYFAVTGLST 165
++V+LS DI TIL TL+FDG++E GT +YRA+ P TGL T
Sbjct: 199 AEVQLSVHDIETILSTLIFDGRVETTIVSAGTSTSRTAVSGQKTLYRAIFPIVPSTGLMT 258
Query: 166 SPCGVCP 172
SPCGVCP
Sbjct: 259 SPCGVCP 265
>gi|254582765|ref|XP_002499114.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
gi|186703770|emb|CAQ43460.1| DNA-directed RNA polymerase III subunit RPC6 [Zygosaccharomyces
rouxii]
gi|238942688|emb|CAR30859.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
Length = 312
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK------REKTANNTN 91
+K+YML++L+P +TGG W+ D + +VEF++ L +RF + + + N+
Sbjct: 145 RKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRFASDRTFPNGFKNFSGNDKK 204
Query: 92 GPLVAQRLA-CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
L A + +T +++ FI + VEL+ +IR++ + L++D K+E+I++ D
Sbjct: 205 ELLYAPNVKNYSTIQDILDFIVASQVVNVELTPANIRSLCDVLVYDDKMEKISH----DC 260
Query: 151 YRA 153
YR
Sbjct: 261 YRV 263
>gi|410080596|ref|XP_003957878.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
gi|372464465|emb|CCF58743.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
Length = 310
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML+ L+P +TGG W+ + + +VEF++ L +R+ E T N
Sbjct: 145 RKIYMLYHLQPSVDVTGGPWFTEGELDVEFINSLLTIIWRY---AAENTFPNGFNNNDDD 201
Query: 98 RLACATPK--------EVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140
+A P E+ +FI++ ++ +ELS +IR++ E L++D K+E
Sbjct: 202 NIANYAPNVKNYVTTDEILEFISNSQVTNIELSNSNIRSLCEVLVYDDKLE 252
>gi|397640426|gb|EJK74113.1| hypothetical protein THAOC_04229 [Thalassiosira oceanica]
Length = 301
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 21/124 (16%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQ---QCYRFLQLKREKTANNTN 91
A KK+YMLFDL P + +TGG WY + +F+ EF+ L C R + N +
Sbjct: 181 AKTKKLYMLFDLTPSKDITGGPWYTEYEFDHEFIAELRNFILMCVRRM--------NRGD 232
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN-NIDGTDM 150
G T K++ + +S+V+LS ++++ +L+TL FD +EQ + DG +
Sbjct: 233 G---------VTLKQIANKMIQANVSRVQLSLDEVQQVLQTLAFDYLVEQRSVTADGEAL 283
Query: 151 YRAV 154
+ A
Sbjct: 284 FVAA 287
>gi|66824061|ref|XP_645385.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74861297|sp|Q86JM3.1|RPC6_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|60473501|gb|EAL71445.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 293
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ++ +KKVYML+++EP R +TGG Y DQ ++ +++ ++ F+ +N
Sbjct: 127 KSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFV--------DNK 178
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+A + +RK + + L EDI+ ++ T+++DG IE++ + M
Sbjct: 179 GAVDLADIITY-----LRKVAEE--ATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAM 231
Query: 151 --------YRAVSPYFAVTGLSTSPCGVCP 172
Y+ V PCG CP
Sbjct: 232 LGRRSGILYKPTKTPIPVNNFCNMPCGNCP 261
>gi|385303565|gb|EIF47629.1| rna polymerase iii subunit c34 [Dekkera bruxellensis AWRI1499]
Length = 321
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVA 96
++K+YML+ L P +TGG W+ D + + +F+D L ++F+ K G +V
Sbjct: 111 QRKIYMLYHLTPSIEVTGGPWFTDSELDTDFIDSLLIIVWKFVASKTFPMCFKGKGTIVG 170
Query: 97 QRLACATPKE--------------VRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
+ P + +FI G++ VEL+ ++++++ + L++D K+E +
Sbjct: 171 GHKQLSYPASMLSGMGGQLPTLARIGQFIASSGVTTVELTLDNVKSLCDVLVYDEKLEXV 230
Query: 143 N 143
N
Sbjct: 231 N 231
>gi|356530565|ref|XP_003533851.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Glycine max]
Length = 237
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
KK+ M D EP + ++GG WY D F+ EF+ L+ C ++ ++ T + G
Sbjct: 83 KKLLMATDFEPSKEISGGEWYTDGKFDTEFIGALSDACLSNIRRRKVATCDGIVG----- 137
Query: 98 RLACATPKEVRKFITDL---GISKVELSEEDIRTILETLLFDGKIEQINNID-------- 146
+RK +D+ G+SK ++ + IL+ L+ + K++++ +
Sbjct: 138 --------WIRKVGSDVFPGGVSKGQVEQ-----ILKNLVMENKVQEVTSTGFGDFESVP 184
Query: 147 -GTDMYRAVSP-YFAVTGLSTSPCGVCP 172
G YR V V +++ PCGVCP
Sbjct: 185 VGEVCYRLVKKGAGGVGAMASIPCGVCP 212
>gi|344232616|gb|EGV64489.1| RNA polymerase Rpc34 [Candida tenuis ATCC 10573]
Length = 321
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTN- 91
+K+YML++L+P +TGG W+ D + + EF+D L +RF+ + T A N N
Sbjct: 142 RKIYMLYNLQPSIDVTGGPWFTDSELDSEFIDNLLMVIWRFVASRTYPTVFQPPAANVNI 201
Query: 92 --GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
+ FI I+ ++L+ DIR + + L+FD ++E + N
Sbjct: 202 LQASYPYNYTGYVDLNSIMDFIIKSEITNIDLAIHDIRALCDVLVFDDRLEMVYN 256
>gi|212532631|ref|XP_002146472.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
gi|210071836|gb|EEA25925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
Length = 359
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 57/189 (30%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLN---------QQCYRFLQLKREKTAN 88
KKVYML +L P +TGG W+ D + EF+ VL+ + Y + ++N
Sbjct: 145 KKVYMLAELTPAEDVTGGAWFTDGVLDAEFIGVLSDYIEVQVSKRSWYEVIPKPAASSSN 204
Query: 89 N-----TNGPLVAQRLACATPKEVRKF------------------ITDLGISKVELSEED 125
N G ++ Q AT KE + + + GI+ V+L E
Sbjct: 205 NKRQKLNTGEIMKQNEPTATEKERKYYPYPADYKFYPTVGEITVEVNKTGITPVKLDEGS 264
Query: 126 IRTILETLLFDGKIEQINNIDGTDMYRAV----------------------SPYFAVTGL 163
I +L + FDG++ +N D T+ Y+AV S + G+
Sbjct: 265 ISQLLRMMCFDGRLIALN--DHTN-YKAVRRPNEIIKARADADRPPEVQQKSFFNGANGM 321
Query: 164 STSPCGVCP 172
+ +PCG CP
Sbjct: 322 TEAPCGQCP 330
>gi|440632371|gb|ELR02290.1| hypothetical protein GMDG_05359 [Geomyces destructans 20631-21]
Length = 333
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ---------- 80
+ E +K+Y+ L P TGG WY D + + F++ L Y++++
Sbjct: 141 KSVEHPTRKMYIKSTLRPSEKATGGAWYTDNELDEAFIEGLTGVLYKYIEARSFYRSTSR 200
Query: 81 --LKR---EKTANNTNG-------PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRT 128
LKR T G PL + E+ FI I+ LS +DI
Sbjct: 201 RPLKRIAGRPTPKPAQGGDTITLLPLPPTYRGYPSLAELTLFIESSPITSTTLSADDISA 260
Query: 129 ILETLLFDGKIEQI----NNIDGTDMYRAVSPYFAV---TGLSTSPCGVCP 172
+L+ L++D +IEQ+ + + +A+ AV GL+ +PCG CP
Sbjct: 261 LLDVLVYDRRIEQVVAGPEGVAFKAVRKAIVGEEAVERGNGLTEAPCGRCP 311
>gi|443894276|dbj|GAC71625.1| RNA polymerase III, subunit C34 [Pseudozyma antarctica T-34]
Length = 516
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML+ L P L+GG WY D + + F++ L+ C F++ K N + L
Sbjct: 148 RKIYMLYGLTPSIELSGGPWYTDNELDTGFINELSMACLNFIRSK-SFPKNGQSRALFPT 206
Query: 98 RLACATPKE--VRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
P V ++ G+++ EL E + ++L+ L++D +IE+I
Sbjct: 207 THTSQLPSANTVHTYLRSSGLTETELELEHVVSLLDILVYDEQIEKI 253
>gi|425773182|gb|EKV11551.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum Pd1]
gi|425778785|gb|EKV16890.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum PHI26]
Length = 351
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 46/198 (23%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVD--------- 69
++L G + + + + +K+YML L P +TGG W+ D + F++
Sbjct: 126 KALEGKNYIKSLHNVKYPSRKMYMLAGLAPSEEVTGGAWFTDGVLDANFINSVAGYIEYT 185
Query: 70 VLNQQCYRF----LQLKREKTANN---------TNGPLVAQRLACATPKEVRKFITDLGI 116
V + Y + KR KTA+ T P T ++ + + GI
Sbjct: 186 VSRKSWYEVPASDRKNKRIKTASGKADVKSDEKTYLPYPHGYAGYPTVAQITSAVNESGI 245
Query: 117 SKVELSEEDIRTILETLLFDGKIEQINN----------------------IDGTDMYRAV 154
+ V L EE + +LE L FD K+ + N +DG D+ A
Sbjct: 246 TPVRLGEESVVQLLEMLCFDNKLVALGNGEWYRSLKSPEAVKANQSRKPPVDGEDL-SAA 304
Query: 155 SPYFAVTGLSTSPCGVCP 172
S + G++ +PCG CP
Sbjct: 305 SKHLVKNGMTEAPCGQCP 322
>gi|343428974|emb|CBQ72519.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Sporisorium reilianum SRZ2]
Length = 369
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YMLF L P L+GG WY D + + F++ L+ F++ K +
Sbjct: 151 RKIYMLFGLTPSIELSGGPWYTDNELDTGFINELSMAILNFVRSKSFPKNGQSRALFPTS 210
Query: 98 RLA-CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI-------------- 142
+ + + ++ G+++ EL E + ++L+ L++D +IE+I
Sbjct: 211 HTSQLPSANSIHSYLQSSGLTETELEVEHVVSLLDILVYDEQIEKIPVLPFSFGGMGGGM 270
Query: 143 -----NNIDGTDMYRAVSPYFA---VTGLSTSPCGVCP 172
++ D +D R+ + G + +PCG CP
Sbjct: 271 NGFDEDDQDYSDSGRSTDGSGSDSDSVGWTETPCGHCP 308
>gi|255955101|ref|XP_002568303.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590014|emb|CAP96173.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 45/197 (22%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVD--------- 69
+SL G + + + + +K+YML L P +TGG W+ D + F++
Sbjct: 126 KSLEGKNYIKSLHNVKYPSRKMYMLAGLAPSEEVTGGAWFTDGVLDANFINSVAGYIEYT 185
Query: 70 VLNQQCYRFLQLKREKTANNTNG------------PLVAQRLACATPKEVRKFITDLGIS 117
V + Y R+K +G P T ++ + D GI+
Sbjct: 186 VSRKSWYEVPASDRKKRIKTASGKAEVRSDEKTYLPYPHGYTGYPTVAQITSAVNDSGIT 245
Query: 118 KVELSEEDIRTILETLLFDGKIEQINN----------------------IDGTDMYRAVS 155
V L EE I +LE L +D K+ + N I+G D+ A +
Sbjct: 246 PVRLGEESIVQLLEMLCYDNKLVALGNGEWYRSLKNPEAVKANQSRKAPIEGDDLSVA-N 304
Query: 156 PYFAVTGLSTSPCGVCP 172
+ G++ +PCG CP
Sbjct: 305 KHLVKNGMTEAPCGQCP 321
>gi|294948682|ref|XP_002785842.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239899950|gb|EER17638.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 316
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 4 IASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDF 63
IAS + LE R + T Q + +KV+ML++LEP + ++GG WY+D
Sbjct: 109 IASGSVTKICSQLEARRLIKKVTSVQHKS-----RKVWMLYELEPSKEVSGGNWYRDGRL 163
Query: 64 EVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSE 123
+ + ++ L Q C ++ N N + T ++V +++ G+S + S
Sbjct: 164 DTDLIERLRQCCLDYI--------TNQNRAV--------TCEDVHRYVVSQGVSHITHSV 207
Query: 124 EDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFA---------VTGLSTSPCGVCP 172
E+I +L +L D I + + G + + Y + +T + PC CP
Sbjct: 208 EEIGDVLRSLELDRVIMVVPSTAGESIAKQC--YVSRPANLGLDYITRIVDVPCIACP 263
>gi|330802412|ref|XP_003289211.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
gi|325080698|gb|EGC34242.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
Length = 293
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 24/151 (15%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWY-QDQDFEVEFVDVLNQQCYRFLQLKREKTANN 89
+ ++ +KKVYML+++EP R +TGGT Y DQ ++ +++ ++ F++ K A +
Sbjct: 127 KSIQSGRKKVYMLYNMEPSRDVTGGTLYGGDQSYDHQYIQIMKMHIKTFVE---NKGAVD 183
Query: 90 TNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID-GT 148
+ + R + L EDI+ ++ T+++DG IE++ + G
Sbjct: 184 LSDIMTYLRKVAEEA------------TSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGA 231
Query: 149 DM-------YRAVSPYFAVTGLSTSPCGVCP 172
M Y+ V PCG CP
Sbjct: 232 LMGRRSGILYKPTKTSIPVNNFCNMPCGNCP 262
>gi|294889371|ref|XP_002772779.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239877329|gb|EER04595.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 438
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 4 IASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDF 63
IAS + LE R + T Q + +KV+ML++LEP + ++GG WY+D
Sbjct: 109 IASGSVTKICSQLEARRLIKKVTSVQHKS-----RKVWMLYELEPSKEVSGGNWYRDGRL 163
Query: 64 EVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSE 123
+ + ++ L Q C ++ N N + T ++V +++ G+S + S
Sbjct: 164 DTDLIERLRQCCLDYI--------TNQNRAV--------TCEDVHRYVVSQGVSHITHSV 207
Query: 124 EDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFA---------VTGLSTSPCGVCP 172
E+I +L +L D I + + G + A Y + +T + PC CP
Sbjct: 208 EEIGDVLRSLELDRVIMVVPSTAGESI--AKQCYVSRPANLGLDYITRIVDVPCIACP 263
>gi|224052869|ref|XP_002297621.1| predicted protein [Populus trichocarpa]
gi|222844879|gb|EEE82426.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ + +K +M + EP + ++GG WY + + EF++ L Q C R ++ K
Sbjct: 77 NIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLRQLCKRQIEKK--------- 127
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
AT +EV I V+++++ I IL TL+ D I ++ +
Sbjct: 128 --------GVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGEFA 179
Query: 147 ----GTDMYRAVSPYFAVTG------LSTSPCGVCP 172
G YR +S A+ G L++ PCGVCP
Sbjct: 180 SIPFGKVCYRYISK-GALGGEPKAGALASIPCGVCP 214
>gi|224142730|ref|XP_002324707.1| predicted protein [Populus trichocarpa]
gi|222866141|gb|EEF03272.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ + +K +M + EP + ++GG WY + + EF++ L Q C R +
Sbjct: 77 NIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLCKRQI------------ 124
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
+R AT +EV I V+++++ I IL TL+ D I ++ + +G +
Sbjct: 125 -----ERRGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKS-NGMGEF 178
Query: 152 RAVS------PYFAVTG---------LSTSPCGVCP 172
++ Y + G L++ PCGVCP
Sbjct: 179 ASIPFGEVCYKYISKVGLGGEPKAGALASIPCGVCP 214
>gi|384493398|gb|EIE83889.1| hypothetical protein RO3G_08594 [Rhizopus delemar RA 99-880]
Length = 304
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT-NGPLVA 96
+K+YMLF+L P +TGG L C +++ + A + A
Sbjct: 139 RKIYMLFNLTPSSEVTGGA-------------CLKAACLKYITSRSFPRAEGIPDAVFGA 185
Query: 97 QRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ-----INNIDGTD-- 149
+ T EV++FIT+ IS +ELS +DI +IL L++DG +E+ + D +D
Sbjct: 186 EHEHYPTASEVKRFITESRISSIELSVKDIESILNILVYDGDVEKKMPFMADMEDFSDDE 245
Query: 150 --------MYRAVSPYFAVTGLST-----SPCGVCP 172
Y+A+ AV LS +PCG CP
Sbjct: 246 EDNGLVQWSYKAIKK--AVNRLSAETFTETPCGKCP 279
>gi|403161593|ref|XP_003321906.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171846|gb|EFP77487.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 525
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNG--PLV 95
+K+Y+L +L+P +GG WY D + + EF+ VL Q + LQ + N+++ P+
Sbjct: 173 RKIYILSELQPSVEHSGGPWYTDNELDTEFIGVLLQSILKCLQDRSYPVQNSSDSDRPMA 232
Query: 96 AQRLACAT---PKEVRKFITDLGISKV-----ELSEEDIRTILETLLFDGKIEQI 142
A T P V + L S++ +L+ E I T+L+ LL+DG +E+I
Sbjct: 233 LLYPASHTPFLPTTVHDVLAYLKQSQIIQEGTDLNTEHILTLLDVLLYDGVVERI 287
>gi|440491159|gb|ELQ73828.1| RNA polymerase III, subunit C34 [Trachipleistophora hominis]
Length = 235
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 EASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP 93
+ +++ ++M+F+ PD +TGG W+ + D +VEF + L + Y F++ K + + P
Sbjct: 116 QKNRQNIFMVFEETPDDEVTGGIWFNNGDVDVEFTNQLIKLIYTFVRNKTRDLISYDHNP 175
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
T ++++ FIT+ + + +S D+R I++ +++ + ++ + D MYRA
Sbjct: 176 ---------TIEDIKSFITESNVLSINISMADLRKIIDVMVYGQILLELRDGDRI-MYRA 225
Query: 154 VSPY 157
+ +
Sbjct: 226 LRSH 229
>gi|401888712|gb|EJT52664.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406696770|gb|EKD00046.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 568
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 40 VYMLFDLEPDRSLTGGTWY-QDQDFEVEFVDVLNQQCYRFLQLKREKTANNT--NGPL-- 94
+Y+L L+P L GG W+ + ++++ FVD L + YR++ K+ K + N + P+
Sbjct: 131 LYILHHLQPPEDLAGGIWFDESKEYDSMFVDSLRRVVYRYVCAKKGKDSINKLCSNPIYP 190
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
V++ A TP +V + I + ++ +L+ +++ I L DG IE I I G +
Sbjct: 191 VSKTGALPTPADVLRHIQNSKVTTAQLTIKNVMEIARALELDGLIEAIKPIGGVSV 246
>gi|169782002|ref|XP_001825464.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus oryzae
RIB40]
gi|83774206|dbj|BAE64331.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 355
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 50/200 (25%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEF----------- 67
+SL G + + + + +K+YML L P +TGG W+ D + F
Sbjct: 130 KSLEGKNYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFINTVAGYIEYT 189
Query: 68 ------VDVLNQQCYRFLQLK--------REKTANNTNGPLVAQRLACATPKEVRKFITD 113
V+V + +R ++K +++ T P A T + + +
Sbjct: 190 VSRKSWVEVPSADAHRTKRIKTSDGSVSVKQEAGQKTFIPFPAGYRGYPTVSMLTDAVNE 249
Query: 114 LGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAV------------- 160
GI+ V L EE I +L+ L +DGK+ +N+ +MY++V AV
Sbjct: 250 SGITPVRLGEESITQLLDMLCYDGKLVALNS---GEMYKSVKNPEAVKQSQARKPAGEDK 306
Query: 161 --------TGLSTSPCGVCP 172
G++ +PCG CP
Sbjct: 307 GIDDRLVTNGMTEAPCGTCP 326
>gi|429966147|gb|ELA48144.1| hypothetical protein VCUG_00382 [Vavraia culicis 'floridensis']
Length = 229
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 10/121 (8%)
Query: 34 EASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP 93
+ +++ ++M+F+ PD +TGG W+ + D + EFV+ L + Y F++ N
Sbjct: 110 QKNRQNIFMIFEETPDDEVTGGIWFNNGDVDAEFVNQLTKLIYTFIR--------NKTRE 161
Query: 94 LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
L+ L T ++++ FIT+ + + +S D++ I+ +++ + ++ + G MYRA
Sbjct: 162 LIPYELN-PTIEDIKSFITESNVLSIHISTADLKKIINVMVYGQILLELQD-GGRTMYRA 219
Query: 154 V 154
+
Sbjct: 220 L 220
>gi|328849993|gb|EGF99164.1| hypothetical protein MELLADRAFT_94867 [Melampsora larici-populina
98AG31]
Length = 511
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-EKTANNTNGPLVA 96
+K+YML +L+P L+GG WY D + + EF+ VL + ++ LQ + ++++ PL
Sbjct: 170 RKIYMLSELQPSIELSGGPWYTDNELDTEFITVLLRSIHQCLQDRSYPPVSSSSTDPLKV 229
Query: 97 QRLACAT----PKEVRKFITDLGISKV-----ELSEEDIRTILETLLFDGKIEQI 142
+ P V + L +++ +L+ E I T+L+ L+FDG +E+I
Sbjct: 230 LLYPTSHTPYLPTTVHDVLAYLKQTQIIQEGTDLTAEHILTLLDVLVFDGVVERI 284
>gi|224012371|ref|XP_002294838.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220969277|gb|EED87618.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 237
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 16/110 (14%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQ---QCYRFLQLKREKTANNTN 91
A KK+YML+DL P + +TGG WY + +F+ EF+ L C R +
Sbjct: 86 AKTKKLYMLYDLTPAKEITGGPWYTEYEFDHEFIAELRNFILMCVRRMNGGLGVGNG--- 142
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ 141
T K++ + + +S+V+LS ++++ +++TL FD IEQ
Sbjct: 143 ----------VTLKQIYEKMVQANVSRVQLSLDEVQQLVQTLAFDYMIEQ 182
>gi|238498852|ref|XP_002380661.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|220693935|gb|EED50280.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|391868106|gb|EIT77329.1| RNA polymerase III, subunit C34 [Aspergillus oryzae 3.042]
Length = 355
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 50/200 (25%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVD--------- 69
+SL G + + + + +K+YML L P +TGG W+ D + F++
Sbjct: 130 KSLEGKNYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFINTVAGYIEYT 189
Query: 70 --------VLNQQCYRFLQLK--------REKTANNTNGPLVAQRLACATPKEVRKFITD 113
V + +R ++K +++ T P A T + + +
Sbjct: 190 VSRKSWFEVPSADAHRTKRIKTSDGSVSVKQEAGQKTFIPFPAGYRGYPTVSMLTDAVNE 249
Query: 114 LGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAV------------- 160
GI+ V L EE I +L+ L +DGK+ +N+ +MY++V AV
Sbjct: 250 SGITPVRLGEESITQLLDMLCYDGKLVALNS---GEMYKSVKNPEAVKQSQARKPAGEDK 306
Query: 161 --------TGLSTSPCGVCP 172
G++ +PCG CP
Sbjct: 307 GIDDRLVTNGMTEAPCGTCP 326
>gi|390605124|gb|EIN14515.1| RNA polymerase Rpc34 [Punctularia strigosozonata HHB-11173 SS5]
Length = 242
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ 80
+K+YML+ LEP LTGG WY D + + EF+ +L+ C RF++
Sbjct: 143 RKLYMLYHLEPSVELTGGPWYTDNELDTEFIKLLSSACLRFIK 185
>gi|443918030|gb|ELU38618.1| RNA polymerase rpc34 subunit domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 491
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+Y+L +L+P ++GG WY + +FE EFV L + C F+Q ++ + + L +
Sbjct: 127 RKIYILANLQPSVEVSGGPWYNNSEFESEFVQTLCKACLNFIQ-QQSYPVHKSKSKLSPR 185
Query: 98 RL-------ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
L T V F+ I+ L + ++L+ L++DG +E +
Sbjct: 186 ALFPTSASSRYPTAAAVLSFLKGSHITDTPLEISHVESLLQVLIYDGLVEAL 237
>gi|315051752|ref|XP_003175250.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
gi|311340565|gb|EFQ99767.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
Length = 357
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 38/173 (21%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML L+P +TGG W+ D + +F+ L+ ++ + + + P +
Sbjct: 155 RKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKGKK 214
Query: 98 RLACA------------------TPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
R A A T ++ K I G++ V + E I +L+ L +DG++
Sbjct: 215 RKAQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRL 274
Query: 140 EQINN--------------------IDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ + + G D S G++ +PCG CP
Sbjct: 275 VSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGAKESSTLGSNGMTDAPCGRCP 327
>gi|326473190|gb|EGD97199.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton
tonsurans CBS 112818]
Length = 348
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML L+P +TGG W+ D + +F+ L+ ++ + + + P +
Sbjct: 155 RKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPNRDR 214
Query: 98 RLAC---------ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN---- 144
+C T ++ K I G++ V + E I +L+ L +DG++ + +
Sbjct: 215 SESCRPTIRKHSHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRLVSLRDGAAY 274
Query: 145 ----------------IDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ G D G++ +PCG CP
Sbjct: 275 RSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCP 318
>gi|388857894|emb|CCF48559.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Ustilago hordei]
Length = 533
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML+ L P L+GG WY D + + F++ L+ F++ K N + L
Sbjct: 150 RKIYMLYGLTPSIELSGGPWYTDNELDTGFINELSMAILNFIRSK-SFPKNGQSRALFPT 208
Query: 98 RLACATP--KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
P V ++ + G+++ +L E + ++L+ L++D +IE+I
Sbjct: 209 SHTSQLPSANAVHSYLRNSGLTETQLEVEHVVSLLDILVYDEQIEKI 255
>gi|209882502|ref|XP_002142687.1| DNA-directed RNA polymerase III subunit RPC6 [Cryptosporidium muris
RN66]
gi|209558293|gb|EEA08338.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Cryptosporidium muris RN66]
Length = 312
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ +KVY+L LEP + + GGT+Y + +F++ FVD + + L KR T N
Sbjct: 140 KSIHVKNRKVYILASLEPSKEIAGGTFYDNGEFDMTFVDYIQDKIIAILMSKRRATIN-- 197
Query: 91 NGPLVAQRLACATPKEVRKFI-----TDLGISKVELSEEDIRTILETLLFDGKIE--QIN 143
E+ FI D S+ +S D+ ++L L+ + KI +IN
Sbjct: 198 ---------------EILDFINSESSVDTCSSRRSISLSDLESVLNMLIIESKILCFKIN 242
Query: 144 NIDGTDMYRAV---SPYFAVTGLSTSPCGVCP 172
N G +Y + S G+ PC CP
Sbjct: 243 N-TGEWLYMCIYWPSCLSTNIGVEDVPCLSCP 273
>gi|154279638|ref|XP_001540632.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412575|gb|EDN07962.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 363
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D + +F+ L ++ + KR
Sbjct: 154 QRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAKR 213
Query: 84 EKTA--NNTNG-----PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
+K NNT G P + T ++ I + G++ V + E I +LE L FD
Sbjct: 214 QKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLCFD 273
Query: 137 GK------------IEQINNI-----------DGTDMYRAVSPYFAV--TGLSTSPCGVC 171
GK +++ N I D TD +A + G++ +PCG C
Sbjct: 274 GKLISLRDGAAYKSVKKPNQISLQRDLGLQTGDQTDQDKADQDNLTLGGNGMTEAPCGRC 333
Query: 172 P 172
P
Sbjct: 334 P 334
>gi|296810958|ref|XP_002845817.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
gi|238843205|gb|EEQ32867.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
Length = 358
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 45/177 (25%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL---------------K 82
+K+YML L+P +TGG W+ D + +F+ L+ ++ K
Sbjct: 155 RKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNAPGGEDQLKGKK 214
Query: 83 REKTANNTNG---PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
R+ A+++ P + T ++ K I G++ V + E I +L+ L +DG++
Sbjct: 215 RKAQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRL 274
Query: 140 EQINNIDGTDMYRAV------------------------SPYFAVTGLSTSPCGVCP 172
+ DG YR+V P G++ +PCG CP
Sbjct: 275 VSLR--DGA-AYRSVKKPNEISLQRDLGLQGPDSGATNEGPSLGSNGMTEAPCGQCP 328
>gi|325092598|gb|EGC45908.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 363
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 49/183 (26%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D + +F+ L ++ + KR
Sbjct: 154 QRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAKR 213
Query: 84 EKTA--NNTNG-----PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
+K NNT G P + T ++ I + G++ V + E I +LE L FD
Sbjct: 214 QKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLCFD 273
Query: 137 GKIEQINNIDGTDMYRAVSPY---------------------------FAVTGLSTSPCG 169
GK+ I+ DG P+ G++ +PCG
Sbjct: 274 GKL--ISLRDGAAYKSVKKPHQISLQRDLGLQTGDQTDQDKADQDNLTLGGNGMTEAPCG 331
Query: 170 VCP 172
CP
Sbjct: 332 RCP 334
>gi|242776068|ref|XP_002478769.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722388|gb|EED21806.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 59/187 (31%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREK-------TANNT 90
KKVYML +L P +TGG W+ D + EF+ VL++ F+++ K + T
Sbjct: 145 KKVYMLAELTPAEDVTGGAWFTDGVLDAEFIGVLSE----FIEITVSKRTWYEIVVKSGT 200
Query: 91 NGPLVAQRLACA-----------------------TPKEVRKFITDLGISKVELSEEDIR 127
+G Q+L T E+ + GI+ V+L E I
Sbjct: 201 SGSNKRQKLNTGEVVKQDEKEKRYIPYPADYKYYPTVGEITTEVNKTGITPVKLDEGSIS 260
Query: 128 TILETLLFDGKIEQINNIDGTDMYRAV---------------SP-------YFAVTGLST 165
+L + FDG++ +N+ Y+AV +P Y G++
Sbjct: 261 QLLRMMCFDGRLVSLNDHAN---YKAVRRPDEIIKARADADRTPEVQQKIFYNGKNGMTE 317
Query: 166 SPCGVCP 172
+PCG CP
Sbjct: 318 APCGQCP 324
>gi|242096318|ref|XP_002438649.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
gi|241916872|gb|EER90016.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
Length = 260
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 20 RSLTG-GTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRF 78
R+L G G + D +K++M D +P +TGGTWY D + + V + C
Sbjct: 89 RTLVGRGLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVSTARRCCQAQ 148
Query: 79 LQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGK 138
+ +RL AT + + I V + + IR I++T++ D
Sbjct: 149 V-----------------ERLGAATAQMIHNGILKDDPRAV-YTIDKIRDIIKTMVLDKV 190
Query: 139 IEQINNIDGTDMYRAVSP----YFAVTG------LSTSPCGVCP 172
+E++ + GT + AV Y VTG + PCGVCP
Sbjct: 191 LEEVKST-GTGEFTAVRAGTMCYRLVTGAPQGGMMEGIPCGVCP 233
>gi|225562662|gb|EEH10941.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 49/183 (26%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D + +F+ L ++ + KR
Sbjct: 154 QRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAKR 213
Query: 84 EKTA--NNTNG-----PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
+K NNT G P + T ++ I + G++ V + E I +LE L FD
Sbjct: 214 QKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLCFD 273
Query: 137 GKIEQINNIDGTDMYRAVSPY---------------------------FAVTGLSTSPCG 169
GK+ I+ DG P+ G++ +PCG
Sbjct: 274 GKL--ISLRDGAAYKSVKKPHQISLQRDLGLQTSDQTDQDKADQDNLTLGGNGMTEAPCG 331
Query: 170 VCP 172
CP
Sbjct: 332 RCP 334
>gi|255536881|ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
gi|223549406|gb|EEF50894.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
Length = 236
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ + +K YM + EP + +TGG WY + + + EF+ +L + C + +
Sbjct: 74 NIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQV------------ 121
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
+L AT + + I GI EL+++ I I++ L+ D + ++ +
Sbjct: 122 -----LKLKVATLEGITDSIKRSGIFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFS 176
Query: 147 ----GTDMYRAVSPYFA-----VTGLSTSPCGVCP 172
G Y+ V + +++ PCGVCP
Sbjct: 177 FIPIGKVCYKCVGKGSTAGEPRIGAMASIPCGVCP 211
>gi|71024497|ref|XP_762478.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
gi|46097727|gb|EAK82960.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
Length = 540
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K++MLF L P L+GG WY D + + F++ L+ F++ K N + L
Sbjct: 152 RKIFMLFGLTPSIELSGGPWYTDNELDTGFINELSMAILNFVRSK-SFPKNGQSRALFPT 210
Query: 98 RLACATP--KEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
P K + ++ +++ EL E + ++L+ L++D +IE+I
Sbjct: 211 SHTSQLPSAKSIHSYLRSSNLTETELEVEHVASLLDILVYDEQIEKI 257
>gi|240279468|gb|EER42973.1| RNA polymerase III subunit Rpc34 [Ajellomyces capsulatus H143]
Length = 363
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 49/183 (26%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D + +F+ L ++ + KR
Sbjct: 154 QRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAKR 213
Query: 84 EKTA--NNTNG-----PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
+K NNT G P + T ++ I G++ V + E I +LE L FD
Sbjct: 214 QKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINSSGLTPVTMGESSIAQLLEMLCFD 273
Query: 137 GKIEQINNIDGTDMYRAVSPY---------------------------FAVTGLSTSPCG 169
GK+ I+ DG P+ G++ +PCG
Sbjct: 274 GKL--ISLRDGAAYKSVKKPHQISLQRDLGLQTGDQTDQDKADQDNLTLGGNGMTEAPCG 331
Query: 170 VCP 172
CP
Sbjct: 332 RCP 334
>gi|121709264|ref|XP_001272362.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
gi|119400511|gb|EAW10936.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
Length = 355
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 50/200 (25%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVD--------- 69
+SL G + + + + +K+YML L P +TGG W+ D + F+
Sbjct: 130 KSLEGKNYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYT 189
Query: 70 VLNQQCYRF--LQLKREKTANNTNG--------------PLVAQRLACATPKEVRKFITD 113
V + Y +R K NG P A T + + +
Sbjct: 190 VSRKSWYEVPAADAQRNKRLKTVNGHAAVKSEPGEKRYLPFPAGYQGYPTVGMITAAVNE 249
Query: 114 LGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAV------------- 160
GI+ V L EE I +LE L +D K+ +NN ++Y++V V
Sbjct: 250 SGITPVRLGEESIVQLLEMLCYDNKLVALNN---GELYKSVKNPATVKLDKSRKPEGDEA 306
Query: 161 --------TGLSTSPCGVCP 172
G++ +PCG CP
Sbjct: 307 EVGDSLVKNGMTEAPCGQCP 326
>gi|226494183|ref|NP_001147652.1| LOC100281261 [Zea mays]
gi|194702730|gb|ACF85449.1| unknown [Zea mays]
gi|195612858|gb|ACG28259.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 257
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 27/160 (16%)
Query: 22 LTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL 81
+ G + D +K++M D +P +TGGTWY D + + V + C +
Sbjct: 89 VASGLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQV-- 146
Query: 82 KREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ 141
QRL AT + + + I + + + +R I++T++ D +E+
Sbjct: 147 ---------------QRLGAATAQMIHQGILKED-PRAGYTIDKVRDIIKTMVLDKVLEE 190
Query: 142 INNID---------GTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ + GT YR V+ + PCGVCP
Sbjct: 191 VKSTGAGDFSAVRAGTMCYRLVTGAPQGGMMEGIPCGVCP 230
>gi|154320538|ref|XP_001559585.1| hypothetical protein BC1G_01741 [Botryotinia fuckeliana B05.10]
gi|347838876|emb|CCD53448.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Botryotinia fuckeliana]
Length = 370
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 57/199 (28%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK-------- 82
+ EA +K+Y+ L+P TGG WY D + + EF+ ++ + + K
Sbjct: 147 KSVEARNRKMYIKSSLQPSDRATGGAWYTDNELDEEFITQISHILFDHIHRKSFYKSSLA 206
Query: 83 ---------------------REKTANN------------TNG---------PLVAQRLA 100
R+KT + +G P+
Sbjct: 207 SLRRPKKVMGKKMSSEEAKALRDKTLGSRVKIEDVTEDDAIDGARRHYDALLPMPPGYQG 266
Query: 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYF-- 158
T E+ FI + G + + L+ +DI+ +L+ L+FD KIE++ YRAV F
Sbjct: 267 YPTLNELTSFIENSGATAMTLTAQDIQQLLDILIFDNKIERVLAGPEGVCYRAVRKGFRE 326
Query: 159 -----AVTGLSTSPCGVCP 172
+ L+ PCG CP
Sbjct: 327 EQEGGPFSALTDVPCGHCP 345
>gi|300708286|ref|XP_002996325.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
gi|239605618|gb|EEQ82654.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
Length = 233
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
+ +KVY+L+D+ P ++TGG W+ D + +VE V + + + +K++ +N N +
Sbjct: 119 NNRKVYVLYDIIPSDAITGGFWFNDNEVDVECVKNVGKIVCNY--IKQKTFIDNENA--I 174
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152
+ + E+ +FI L ++ +E+++ +L TL++D KIE + + G + YR
Sbjct: 175 NKYSNNPSLSEITEFINTLNFLNSKVKDEELKILLNTLIYDEKIELLMD-QGIERYR 230
>gi|225680490|gb|EEH18774.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb03]
gi|226292874|gb|EEH48294.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb18]
Length = 362
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 50/183 (27%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D +V+F+ + ++ ++KR
Sbjct: 154 QRKMYMLSGLQPSEDVTGGAWFTDGVLDVDFIRGIGGWIEHWVSSRSWFDQAAAERKVKR 213
Query: 84 EKTANNTNG------PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDG 137
+K +++ P + T ++ I + G++ V L E I +LE L FDG
Sbjct: 214 QKVRQDSSKGEPQYIPYLPSYSGYPTVTDITNAINNSGLTPVTLCESSISQLLEMLCFDG 273
Query: 138 KIEQINNIDGTDMYRAV----------------------------SPYFAVTGLSTSPCG 169
K+ I+ DG Y++V S G++ +PCG
Sbjct: 274 KL--ISLRDGA-AYKSVKKPNQISLQRDLGLQTGDKKGGNNADQDSLILGGNGMTEAPCG 330
Query: 170 VCP 172
CP
Sbjct: 331 RCP 333
>gi|413943766|gb|AFW76415.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 193
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 27/150 (18%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D +K++M D +P +TGGTWY D + + V + C +
Sbjct: 35 DVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQV------------ 82
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
QRL AT + + + I + + + +R I++T++ D +E++ +
Sbjct: 83 -----QRLGAATAQMIHQGILKED-PRAGYTIDKVRDIIKTMVLDKVLEEVKSTGAGDFS 136
Query: 147 ----GTDMYRAVSPYFAVTGLSTSPCGVCP 172
GT YR V+ + PCGVCP
Sbjct: 137 AVRAGTMCYRLVTGAPQGGMMEGIPCGVCP 166
>gi|358374565|dbj|GAA91156.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus kawachii
IFO 4308]
Length = 355
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 51/182 (28%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML +L P +TGG W+ D + F++ + + K A +++GP +
Sbjct: 149 RKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSDGPR-NK 207
Query: 98 RLACA----------TPKEVRKF----------------ITDLGISKVELSEEDIRTILE 131
R+ A PKE F + + GI+ V L EE I +LE
Sbjct: 208 RMKTADGGVAVKQEGAPKEYLPFPAGYQGYPTIPQLTAAVNESGITPVRLGEESITQLLE 267
Query: 132 TLLFDGKIEQINNIDGTDMYRAVSPYFAV---------------------TGLSTSPCGV 170
L +D K+ +NN + Y++V V G++ +PCG
Sbjct: 268 MLCYDNKLVSLNN---GEFYKSVKNPEQVKSQQARKPRTDDAGIDDRLVKNGMTEAPCGN 324
Query: 171 CP 172
CP
Sbjct: 325 CP 326
>gi|356567166|ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 239
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ + +K YM + EP + +TGG WY + +F++++ C +++
Sbjct: 77 NIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVCLKYI------------ 124
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
R AT V ++ G+ VE++ + I IL TL+ D +I ++ +
Sbjct: 125 -----FRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFS 179
Query: 147 ----GTDMYRAVSPYF-----AVTGLSTSPCGVCP 172
G YR S +++ PCGVCP
Sbjct: 180 SVPVGRICYRCKSKGGNRGEQKPGAMASIPCGVCP 214
>gi|156054874|ref|XP_001593363.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980]
gi|154704065|gb|EDO03804.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 57/199 (28%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK-------- 82
+ E +K+Y+ L+P TGG WY D + + EF+ ++ + + K
Sbjct: 147 KSVENRNRKMYIKSSLQPSDRATGGAWYTDNELDEEFITQISHILFDHIHRKSFYKSSSA 206
Query: 83 ----------REKTANNTNG--------------------------------PLVAQRLA 100
R+ +A+ P+
Sbjct: 207 SLKKPKKVVGRKMSADEAKALRDKALGGRVKIEDTTEDDAVDGARRHYDALLPMPPGYQG 266
Query: 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYF-- 158
T E+ FI + G + + L+ +DI+ +LE L+FD KIE++ YRAV F
Sbjct: 267 YPTLNELTSFIENSGATAMTLTAQDIQQLLEILIFDNKIEKVLAGPEGVCYRAVRKGFRE 326
Query: 159 -----AVTGLSTSPCGVCP 172
+ L+ PCG CP
Sbjct: 327 DQEGGPSSALTDVPCGHCP 345
>gi|326477655|gb|EGE01665.1| DNA-directed RNA polymerase III subunit RPC6 [Trichophyton equinum
CBS 127.97]
Length = 357
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 38/173 (21%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL---------------K 82
+K+YML L+P +TGG W+ D + +F+ L+ ++ K
Sbjct: 155 RKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKGKK 214
Query: 83 REKTANNTNG---PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
R+ A+++ P ++ T ++ K I G++ V + E I +L+ L +DG++
Sbjct: 215 RKLQADDSETQYIPYLSSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRL 274
Query: 140 EQINN--------------------IDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ + + G D G++ +PCG CP
Sbjct: 275 VSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCP 327
>gi|119489044|ref|XP_001262822.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
gi|119410980|gb|EAW20925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
Length = 352
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 47/197 (23%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVD--------- 69
+SL G ++ + + + +K+YML L P +TGG W+ D + F+
Sbjct: 130 KSLEGKSYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYT 189
Query: 70 VLNQQCYRFLQL--KREKTANNTNG-----------PLVAQRLACATPKEVRKFITDLGI 116
V + Y KR KTA+ P A T + + + GI
Sbjct: 190 VSRKSWYEVPATGNKRLKTADGRASVKQESGEKKYLPYPAGYQGYPTVAMITAAVNESGI 249
Query: 117 SKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAV---------------- 160
+ V L EE I +LE L +D K+ +NN Y++V AV
Sbjct: 250 TPVRLGEESIIQLLEMLCYDKKLVALNN---GQFYKSVKNPAAVKMEKNRKPEGDVEDVG 306
Query: 161 -----TGLSTSPCGVCP 172
G++ PCG CP
Sbjct: 307 DKLVTNGMTEVPCGPCP 323
>gi|70982438|ref|XP_746747.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus
fumigatus Af293]
gi|66844371|gb|EAL84709.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus Af293]
gi|159123012|gb|EDP48132.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus A1163]
Length = 352
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 47/197 (23%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVD--------- 69
+SL G ++ + + + +K+YML L P +TGG W+ D + F+
Sbjct: 130 KSLEGKSYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYT 189
Query: 70 VLNQQCYRFLQL--KREKTANNTNG-----------PLVAQRLACATPKEVRKFITDLGI 116
V + Y KR KTA+ P A T + + + GI
Sbjct: 190 VSRKSWYEVPATGNKRLKTADGRASVKQESGEKKYLPYPAGYQGYPTVAMITAAVNESGI 249
Query: 117 SKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAV---------------- 160
+ V L EE I +LE L +D K+ +NN Y++V AV
Sbjct: 250 TPVRLGEESIIQLLEMLCYDKKLVALNN---GQFYKSVKNPAAVKMEKNRKPEGDVEDVG 306
Query: 161 -----TGLSTSPCGVCP 172
G++ PCG CP
Sbjct: 307 DKLVTNGMTEVPCGPCP 323
>gi|303323527|ref|XP_003071755.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111457|gb|EER29610.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 362
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 44/180 (24%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D + +F+ L R++ Q K+
Sbjct: 154 QRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQKKK 213
Query: 84 EKTANNTNGPLVAQRL-------ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
K N+T +Q + T ++ K I G++ V L E I +LE L +D
Sbjct: 214 RKLENDTPKSTESQYIPYLPSYGGYPTVIDITKAINASGLTPVTLGEGSIAQLLEMLCYD 273
Query: 137 GK------------IEQINNID------------GTDMYRAVSPYFAVTGLSTSPCGVCP 172
G+ +++ N I G D G++ PCG CP
Sbjct: 274 GRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGRCP 333
>gi|378754947|gb|EHY64975.1| hypothetical protein NERG_02031 [Nematocida sp. 1 ERTm2]
Length = 231
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWY-QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVA 96
+KVYML+D P L G W+ QD + +V FV+ + + ++ N+ G +
Sbjct: 124 RKVYMLYDAVPSDDLGDGPWFTQDAELDVGFVEAIKGVAHEWIV--------NSIGKDMP 175
Query: 97 QRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
KEV F+ IS V LS ED++ IL+ L+++ KI Q++
Sbjct: 176 AYEDLPGIKEVHSFLMRAEISSVHLSLEDVKRILDILVYERKIIQLDQ 223
>gi|327296369|ref|XP_003232879.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
gi|326465190|gb|EGD90643.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
Length = 357
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 38/173 (21%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YML L+P +TGG W+ D + +F+ L+ ++ + + + P +
Sbjct: 155 RKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKGKK 214
Query: 98 RLACA------------------TPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
R A T ++ K I G++ V + E I +L+ L +DG++
Sbjct: 215 RKLPADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRL 274
Query: 140 EQINN--------------------IDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ + + G D G++ +PCG CP
Sbjct: 275 VSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSSLGSNGMTEAPCGQCP 327
>gi|302502965|ref|XP_003013443.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
gi|291177007|gb|EFE32803.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
Length = 357
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 38/173 (21%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL---------------K 82
+K+YML L+P +TGG W+ D + +F+ L+ ++ K
Sbjct: 155 RKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKGKK 214
Query: 83 REKTANNTNG---PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
R+ A+++ P + T ++ K I G++ V + E I +L+ L +DG++
Sbjct: 215 RKLQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRL 274
Query: 140 EQINN--------------------IDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ + + G D G++ +PCG CP
Sbjct: 275 VSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCP 327
>gi|323303202|gb|EGA57001.1| Rpc34p [Saccharomyces cerevisiae FostersB]
Length = 241
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ E T N NG
Sbjct: 142 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFIS---ENTFPNGFKNFENG 198
Query: 93 PLVAQRLACATPKEVRKFITDLGI 116
P +RL C+ K++ + GI
Sbjct: 199 P-KKKRLLCSKRKKLLYHTRNFGI 221
>gi|295661418|ref|XP_002791264.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280826|gb|EEH36392.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 362
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 50/183 (27%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D +V+F+ + ++ + KR
Sbjct: 154 QRKMYMLSGLQPSEDVTGGAWFTDGVLDVDFIRGIGGWIEHWVSSRSWFDQAAAERKAKR 213
Query: 84 EKTANNTNG------PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDG 137
+K +++ P + T ++ I + G++ V + E I +LE L FDG
Sbjct: 214 QKVRQDSSKGEPQYIPYLPSYSGYPTVTDITNAINNSGLTPVTMGESSISQLLEMLCFDG 273
Query: 138 KIEQINNIDGTDMYRAV----------------------------SPYFAVTGLSTSPCG 169
K+ I+ DG Y++V S G++ +PCG
Sbjct: 274 KL--ISLRDGA-AYKSVKKPNQISLQRELGLQTGDKTGENNADQDSLTLGGNGMTEAPCG 330
Query: 170 VCP 172
CP
Sbjct: 331 RCP 333
>gi|258575987|ref|XP_002542175.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902441|gb|EEP76842.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 361
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 43/179 (24%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL------------KRE 84
++K+YML L+P +TGG W+ D + +F+ L R++ K++
Sbjct: 154 QRKIYMLAGLQPSEEVTGGAWFTDGILDADFIHSLGVWIERWISARSWHDTEKADRQKKK 213
Query: 85 KTANNTNGPLVAQRL-------ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDG 137
+ + + P Q L T ++ K I G++ V L E I +LE L +DG
Sbjct: 214 RKLDEASKPTEPQYLPYLPTYTGYPTVTDITKAINASGLTPVTLGEGSIAQLLEMLCYDG 273
Query: 138 K------------IEQINNID----------GTDMYRAVSPYFAV--TGLSTSPCGVCP 172
+ +++ N I G D + A+ G++ PCG CP
Sbjct: 274 RLVSLRDGAAYKSVKKPNQISLQRELGFQGPGADKGTSDQDQLALGSNGMTEVPCGRCP 332
>gi|320035104|gb|EFW17046.1| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides
posadasii str. Silveira]
Length = 362
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 44/180 (24%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D + +F+ L R++ Q K+
Sbjct: 154 QRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQKKK 213
Query: 84 EKTANNTNGPLVAQRL-------ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
K N+T +Q + T ++ K I G++ V L E I +LE L +D
Sbjct: 214 RKLENDTLKSTESQYIPYLPSYGGYPTVIDITKAINASGLTPVTLGEGSIAQLLEMLCYD 273
Query: 137 GK------------IEQINNID------------GTDMYRAVSPYFAVTGLSTSPCGVCP 172
G+ +++ N I G D G++ PCG CP
Sbjct: 274 GRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGRCP 333
>gi|223975579|gb|ACN31977.1| unknown [Zea mays]
gi|413935838|gb|AFW70389.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|413954528|gb|AFW87177.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D +K++M D +P +TGGTWY D + + V + C +
Sbjct: 102 DVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQV------------ 149
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
+RL AT + + I + + + IR I++T++ D +E++ + GT +
Sbjct: 150 -----ERLGAATVQMIHHGILK-DDPRAGYTIDKIRDIIKTMVLDKVLEEVKST-GTGEF 202
Query: 152 RAVSP----YFAVTG------LSTSPCGVCP 172
R V Y VTG + PCGVCP
Sbjct: 203 RDVRAGTMCYRLVTGAPQGGMMEGIPCGVCP 233
>gi|226530096|ref|NP_001151058.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|195643984|gb|ACG41460.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D +K++M D +P +TGGTWY D + + V + C +
Sbjct: 102 DVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQV------------ 149
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
+RL AT + + I + + + IR I++T++ D +E++ + GT +
Sbjct: 150 -----ERLGAATVQMIHHGILK-DDPRAGYTIDKIRDIIKTMVLDKVLEEVKST-GTGEF 202
Query: 152 RAVSP----YFAVTG------LSTSPCGVCP 172
R V Y VTG + PCGVCP
Sbjct: 203 RDVRAGTMCYRLVTGAPQGGTMEGIPCGVCP 233
>gi|302652784|ref|XP_003018234.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
gi|291181855|gb|EFE37589.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
Length = 365
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 38/173 (21%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL---------------K 82
+K+YML L+P +TGG W+ D + +F+ L+ ++ K
Sbjct: 163 RKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKGKK 222
Query: 83 REKTANNTNG---PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
R+ A+++ P + T ++ K I G++ V + E I +L+ L +DG++
Sbjct: 223 RKLQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRL 282
Query: 140 EQINN--------------------IDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
+ + + G D G++ +PCG CP
Sbjct: 283 ISLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCP 335
>gi|299749618|ref|XP_001836233.2| hypothetical protein CC1G_06318 [Coprinopsis cinerea okayama7#130]
gi|298408519|gb|EAU85605.2| hypothetical protein CC1G_06318 [Coprinopsis cinerea okayama7#130]
Length = 207
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL 79
++++ ++L+DLEP +TGG+WY D+ +VEF+D + C R++
Sbjct: 138 TRQRTFILYDLEPGVEITGGSWYTDKKIDVEFIDQVKSFCLRYI 181
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 6 SKKKVYMLFDLEPDRSLTGGTWYQDQDFE 34
++++ ++L+DLEP +TGG+WY D+ +
Sbjct: 138 TRQRTFILYDLEPGVEITGGSWYTDKKID 166
>gi|66475946|ref|XP_627789.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|32399034|emb|CAD98274.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, possible
[Cryptosporidium parvum]
gi|46229200|gb|EAK90049.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|323508939|dbj|BAJ77362.1| cgd6_4580 [Cryptosporidium parvum]
gi|323510447|dbj|BAJ78117.1| cgd6_4580 [Cryptosporidium parvum]
Length = 319
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 22/114 (19%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ +KVY+L LEP + L+GGT+Y++ +F++ FVD + ++ F+ KR+
Sbjct: 148 KSIHVKNRKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFIDSKRK------ 201
Query: 91 NGPLVAQRLACATPKEVRKFIT-----DLGISKVELSEEDIRTILETLLFDGKI 139
T +E+ +FI D ++ +S D+++++ L+ + KI
Sbjct: 202 -----------CTLQEILEFINYDMNMDSSSARKNISLSDLQSVINMLIVELKI 244
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 8 KKVYMLFDLEPDRSLTGGTWYQDQDFEAS-----KKKVYMLFD 45
+KVY+L LEP + L+GGT+Y++ +F+ + K+K+ D
Sbjct: 155 RKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFID 197
>gi|67623655|ref|XP_668110.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis TU502]
gi|54659309|gb|EAL37892.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis]
Length = 319
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 22/114 (19%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ +KVY+L LEP + L+GGT+Y++ +F++ FVD + ++ F+ KR+
Sbjct: 148 KSIHVKNRKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFIDSKRK------ 201
Query: 91 NGPLVAQRLACATPKEVRKFIT-----DLGISKVELSEEDIRTILETLLFDGKI 139
T +E+ +FI D ++ +S D+++++ L+ + KI
Sbjct: 202 -----------CTLQEILEFINYDMNMDSSSARKNISLSDLQSVINMLIVELKI 244
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 8 KKVYMLFDLEPDRSLTGGTWYQDQDFEAS-----KKKVYMLFD 45
+KVY+L LEP + L+GGT+Y++ +F+ + K+K+ D
Sbjct: 155 RKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFID 197
>gi|134079876|emb|CAK41008.1| unnamed protein product [Aspergillus niger]
Length = 366
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 54/184 (29%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK------------REK 85
+K+YML +L P +TGG W+ D + F++ + + K R K
Sbjct: 159 RKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSSDGPRNK 218
Query: 86 TANNTNGPLVAQRLACATPKEVRKF----------------ITDLGISKVELSEEDIRTI 129
+G L ++ PKE F + + GI+ V L EE I +
Sbjct: 219 RMKTADGSLAVKQE--GAPKEYLPFPAGYQGYPTIPMLTAAVNESGITPVRLGEESITQL 276
Query: 130 LETLLFDGKIEQINNIDGTDMYRAVSPYFAV---------------------TGLSTSPC 168
LE L +D K+ +NN + Y++V V G++ +PC
Sbjct: 277 LEMLCYDNKLVSLNN---GEFYKSVKNPEQVKSQQARKPRTDDAGIDDRLVKNGMTEAPC 333
Query: 169 GVCP 172
G CP
Sbjct: 334 GNCP 337
>gi|392867939|gb|EAS33659.2| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides immitis
RS]
Length = 362
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 44/180 (24%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-------------QLKR 83
++K+YML L+P +TGG W+ D + +F+ L R++ Q K+
Sbjct: 154 QRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQKKK 213
Query: 84 EKTANNTNGPLVAQRL-------ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
K N+ +Q + T ++ K I G++ V L E I +LE L +D
Sbjct: 214 RKLENDIPKSTESQYIPYLPSYGGYPTVMDITKAINASGLTPVTLGEGSIAQLLEMLCYD 273
Query: 137 GK------------IEQINNID------------GTDMYRAVSPYFAVTGLSTSPCGVCP 172
G+ +++ N I G D G++ PCG CP
Sbjct: 274 GRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGRCP 333
>gi|317033273|ref|XP_001395167.2| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus niger
CBS 513.88]
gi|350637586|gb|EHA25943.1| hypothetical protein ASPNIDRAFT_190142 [Aspergillus niger ATCC
1015]
Length = 356
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 54/184 (29%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK------------REK 85
+K+YML +L P +TGG W+ D + F++ + + K R K
Sbjct: 149 RKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSSDGPRNK 208
Query: 86 TANNTNGPLVAQRLACATPKEVRKF----------------ITDLGISKVELSEEDIRTI 129
+G L ++ PKE F + + GI+ V L EE I +
Sbjct: 209 RMKTADGSLAVKQE--GAPKEYLPFPAGYQGYPTIPMLTAAVNESGITPVRLGEESITQL 266
Query: 130 LETLLFDGKIEQINNIDGTDMYRAVSPYFAV---------------------TGLSTSPC 168
LE L +D K+ +NN + Y++V V G++ +PC
Sbjct: 267 LEMLCYDNKLVSLNN---GEFYKSVKNPEQVKSQQARKPRTDDAGIDDRLVKNGMTEAPC 323
Query: 169 GVCP 172
G CP
Sbjct: 324 GNCP 327
>gi|342883338|gb|EGU83852.1| hypothetical protein FOXB_05634 [Fusarium oxysporum Fo5176]
Length = 383
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 76/215 (35%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+++ + P TGG WY DQ+F+ F++ L + Y F +KR+ + ++T
Sbjct: 146 KNVEHPNKKMFIKASIRPSDRATGGPWYTDQNFDEAFIEDLQRVVYDF--IKRQSSYHST 203
Query: 91 NG---------------------------------------------------PLVAQRL 99
+G PL A
Sbjct: 204 HGGGAARTQVPKKGVVKGGVEKGKKRDASHMDEPPAKATKISPTAAVKKDALLPLPAGYT 263
Query: 100 ACATPKEVRKFITDLGISK-VELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV---- 154
T +++ + ++ GI+ LSE D++ +++ L++D IE + + G YR
Sbjct: 264 GYPTVRDIARLLSSSGITHNTILSEHDVQKLVDVLVWDNLIESV-KVAGKIGYRVSRIAK 322
Query: 155 -----------------SPYFAVTGLSTSPCGVCP 172
P V+ + +PCG CP
Sbjct: 323 QSLESWAGRDDPTGREGGPEPIVSAFTEAPCGRCP 357
>gi|346971954|gb|EGY15406.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium dahliae
VdLs.17]
Length = 393
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 72/214 (33%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR------- 83
++ E KK+Y+ ++P TGG W+ DQ + F++ L + Y +++ +
Sbjct: 154 KNVEHPNKKMYIKASMQPSERATGGPWFTDQTLDEAFIEELQRVIYDYIKRQSSYFHKGG 213
Query: 84 -------------------------EKTANNTNG-----------------PLVAQRLAC 101
E+ +++ NG PL A
Sbjct: 214 DARAAVPKKGIVKGGPPAGGRKRGAEQISDDANGGEAHAVGATQVDKTTYLPLPAGYKEY 273
Query: 102 ATPKEVRKFITDLGI-SKVELSEEDIRTILETLLFDGKIE--QINNIDGTDMYRAV---- 154
T +++ +FI+ GI ++ L +DI+ +++ L+FDG +E ++ G + RA
Sbjct: 274 PTVRDIARFISQAGITTETTLGVDDIQKLVDVLVFDGLVEPIRVGGKHGLRVRRAAKQSL 333
Query: 155 ----------------SPYFAVTGLSTSPCGVCP 172
+P G + +PCG CP
Sbjct: 334 GNWAGQGADESGIERGAPEPYANGYTEAPCGRCP 367
>gi|400602056|gb|EJP69681.1| RNA polymerase Rpc34 subunit [Beauveria bassiana ARSEF 2860]
Length = 383
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 74/213 (34%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ + P TGG WY DQ+F+ F++ L + + F +KR+ + ++T
Sbjct: 146 KNVEHPNKKMYIKASIRPSDRATGGPWYTDQNFDDAFIEELQRVVFDF--IKRQSSYHST 203
Query: 91 N------------------GPL-----------------VAQRLACATP----------- 104
+ G L V++ A ATP
Sbjct: 204 HAGSSSSARAQAPKKGVVQGGLERGKKRDAREMSKPPSKVSKTAAGATPRKEALLPLPAG 263
Query: 105 -------KEVRKFITDLGIS-KVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV-- 154
+++ + ++ GI+ LSEED+R +++ L++D IE + + G YR
Sbjct: 264 YTGYPSVRDIARLLSSSGITNNTILSEEDVRKLIDVLVWDNLIEPV-RVAGKVGYRVARV 322
Query: 155 ---------------SPYFAVTGLSTSPCGVCP 172
P + + +PCG CP
Sbjct: 323 ARQSTEPWAGREDPTGPEPYTSPYTEAPCGRCP 355
>gi|388504992|gb|AFK40562.1| unknown [Lotus japonicus]
Length = 232
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 29/153 (18%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
+ ++ KK YM D EP + LTGG WY D F+ +F++ +++ ++ T +
Sbjct: 70 NIQSRGKKRYMAVDFEPSKELTGGDWYTDGKFDTDFINAAKDVFLKYVFKQKVATCDG-- 127
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI------ 145
V ++ + V+++ + + IL L+ D +I ++ +
Sbjct: 128 ---------------VLEWTRKNAVFSVDVTAQQVEEILRALVLDDEIIEVESTGKEEFA 172
Query: 146 ---DGTDMYRA---VSPYFAVTGLSTSPCGVCP 172
G Y++ V +++ PCGVCP
Sbjct: 173 SVPKGKICYKSKGGVRGEKKAGAMASIPCGVCP 205
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 8 KKVYMLFDLEPDRSLTGGTWYQ----DQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDF 63
KK YM D EP + LTGG WY D DF + K V++ + + + G +
Sbjct: 76 KKRYMAVDFEPSKELTGGDWYTDGKFDTDFINAAKDVFLKYVFKQKVATCDGVLEWTRKN 135
Query: 64 EVEFVDVLNQQCYRFLQ 80
V VDV QQ L+
Sbjct: 136 AVFSVDVTAQQVEEILR 152
>gi|326504832|dbj|BAK06707.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326519883|dbj|BAK03866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 267
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 30/151 (19%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D KKV+M +EP +TGGTWY + + + V + ++C +
Sbjct: 110 DVRHRGKKVFMDARIEPSPEITGGTWYHNGQLDTDAVAAVRRRCLDQI------------ 157
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID----- 146
RL ATP V K + + + S + IR IL+T+ D +E+ +
Sbjct: 158 -----DRLGAATPDMVHKGV-EREDPRAGYSIDQIRDILQTMALDRVLEECRSTGEGEFS 211
Query: 147 ----GTDMY-RAVSPYFAVTGLSTSPCGVCP 172
G Y R +P + + PCGVCP
Sbjct: 212 AVRAGRVCYRRGGAPQGGM--IEGIPCGVCP 240
>gi|389631391|ref|XP_003713348.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|351645681|gb|EHA53541.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|440474129|gb|ELQ42893.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
Y34]
gi|440487009|gb|ELQ66821.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
P131]
Length = 415
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 82/225 (36%), Gaps = 83/225 (36%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK-------- 82
+ E KK+Y+ +L P TGG WY D + F+D L + + ++ +
Sbjct: 150 KSVEHPNKKMYIKANLRPSEKATGGPWYNDSTLDEAFIDELERVVFDIVKARSTYRSHAS 209
Query: 83 --------------------REKTA------NNTNG------------------------ 92
+++TA + TNG
Sbjct: 210 DSANAKVPKKAVKGTATAAGKKRTAAEAGVDSTTNGNGHAPKVNGHTGSGAVSSSRRNKL 269
Query: 93 -PLVAQRLACATPKEVRKFITDLGISKVE-LSEEDIRTILETLLFDGKIEQINNI--DGT 148
PL A T K++ I + GI+K + L E+DI+ +++ L+FDG IE +++
Sbjct: 270 RPLPAGYKGYPTTKQIAVMIQEAGIAKNQTLEEDDIQQLVDVLVFDGLIEPVHHGYEPRK 329
Query: 149 DMYRA---------------------VSPYFAVTGLSTSPCGVCP 172
YRA + P GL+ +PCG CP
Sbjct: 330 PGYRAAEVARLDDVTLSDQNQMDVVRMGPPARENGLTEAPCGRCP 374
>gi|237844055|ref|XP_002371325.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|211968989|gb|EEB04185.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|221485540|gb|EEE23821.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221506390|gb|EEE32025.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 325
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ +K+Y+L LEP + + GG++Y + +F V+ L Q FLQ
Sbjct: 151 KSIHVKNRKMYILAHLEPAKEIAGGSFYSNGEFNEHLVEHLRDQTRTFLQ---------N 201
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
G Q LA T + + S+ED+ +L TL F+ KI ++ + G
Sbjct: 202 AGTASFQALAAYTRSSGER-------NGATFSDEDLEKVLNTLEFEQKICRVPTL-GQPT 253
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
+ S + A+ S PC CP
Sbjct: 254 F-VWSKFPALYDPSAVPCSTCP 274
>gi|324511218|gb|ADY44675.1| DNA-directed RNA polymerase III subunit RPC6 [Ascaris suum]
Length = 183
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR 83
+ KK YML+ +E D SLTGG +Y +Q + +FV L C LQ +R
Sbjct: 135 GTSKKCYMLYSVEADESLTGGAFYSEQQLDSQFVQTLVHLCVSMLQSRR 183
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 4 IASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
+ + KK YML+ +E D SLTGG +Y +Q ++
Sbjct: 134 VGTSKKCYMLYSVEADESLTGGAFYSEQQLDS 165
>gi|399217542|emb|CCF74429.1| unnamed protein product [Babesia microti strain RI]
Length = 296
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+D +K+YML +++P + GG++Y + DF+ V+ L Q RFL
Sbjct: 142 KDIHHKNRKLYMLAEIDPAVEIAGGSFYSNGDFDESLVETLRDQISRFL----------- 190
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+ +T +++ ++I KV S+EDI I++ L+ + K + + T +
Sbjct: 191 ------MKFQGSTIEKITQYIKGFVCDKV--SQEDIEKIVQILILENKAYSAISANNTMI 242
Query: 151 YRAV--SPYFAVTGLSTSPCGVCP 172
Y + +T PC CP
Sbjct: 243 YIWCGDAQLETLTYSYNVPCFTCP 266
>gi|358058137|dbj|GAA96023.1| hypothetical protein E5Q_02683 [Mixia osmundae IAM 14324]
Length = 595
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKRE----KTANNTNGP 93
+++YML +L P L+GG W+ D + +++F+++L C L L R K +G
Sbjct: 202 RRIYMLAELTPSAELSGGPWFHDNELDLDFINML---CMTVLNLIRNATWPKAKKGDSGA 258
Query: 94 LVAQRLACATPK--EVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
L+ P ++ + I L I L+ +++ IL+ L+ D +IE+I
Sbjct: 259 LLPASHTPLLPSVWQLLQEIQQLRIVNQPLTADNLAEILDILVLDREIEKI 309
>gi|357502651|ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
Length = 456
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 39 KVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQR 98
K+YM + EP + +TGG +Y + + F+D L Q C + + L+R T +
Sbjct: 82 KIYMGTEFEPSKDITGGHFYSEGSLDTVFIDALKQTCLQCISLERVSTCDG--------- 132
Query: 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
+++ G+ +++ E I IL+TL+ D +I Q+ +
Sbjct: 133 --------CLEWVKRSGVFTTQVTGEQIEEILQTLVLDDEIMQMTS 170
>gi|51090893|dbj|BAD35466.1| unknown protein [Oryza sativa Japonica Group]
gi|125597789|gb|EAZ37569.1| hypothetical protein OsJ_21900 [Oryza sativa Japonica Group]
gi|215717140|dbj|BAG95503.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765565|dbj|BAG87262.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 32/146 (21%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K+YM ++P +TGGTWY++ + + V ++C +
Sbjct: 109 EKIYMDVRIDPSPEITGGTWYRNGQLDSDAVASARRRCLDQI-----------------D 151
Query: 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID---------GT 148
+L AT + + + I+ S + S E +R IL T+ D ++E++ + G
Sbjct: 152 KLGVATAESIHEGISRE-CSNLAYSTEQVRDILRTMALDREVEEVRSTGAGEFGDLRAGR 210
Query: 149 DMYRAVSPYFAVTG--LSTSPCGVCP 172
YR P V G + PCGVCP
Sbjct: 211 VCYRRGGP---VQGGMMERIPCGVCP 233
>gi|401412778|ref|XP_003885836.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
gi|325120256|emb|CBZ55810.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
Length = 311
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ +K+Y+L LEP + + GG++Y + +F V+ L +Q FLQ
Sbjct: 143 KSIHVKNRKMYILAHLEPAKEIAGGSFYSNGEFNEHLVEHLREQTRTFLQ---------N 193
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI-DGTD 149
G Q LA T + + S+ED+ +L +L F+ KI ++ + T
Sbjct: 194 AGTASFQALAAYTRSSGER-------NGATFSDEDLEKVLNSLEFEQKICRVPTLGQPTF 246
Query: 150 MYRAVSPYFAVTGLSTSPCGVCP 172
++ + +GL PC CP
Sbjct: 247 VWSKFPALYDPSGL---PCSTCP 266
>gi|357123938|ref|XP_003563664.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Brachypodium distachyon]
Length = 258
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 30/151 (19%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D KKV+M +EP +TGGTWY + + E V + ++C +
Sbjct: 101 DVRHRGKKVFMDSRMEPAPEITGGTWYHNGQLDTEAVAAVRRRCLDQI------------ 148
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI------ 145
RL ATP V K + + + + IR IL+T+ D +E+ +
Sbjct: 149 -----DRLGAATPDMVHKGV-EREDPRAGYMIDQIRDILKTMALDRVLEECRSTGEGEFS 202
Query: 146 ---DGTDMY-RAVSPYFAVTGLSTSPCGVCP 172
G Y R +P + + PCGVCP
Sbjct: 203 AVRSGRVCYRRGGAPQGGM--IEGIPCGVCP 231
>gi|403367656|gb|EJY83651.1| DNA-directed RNA polymerase III, subunit C34 [Oxytricha trifallax]
Length = 289
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 28/152 (18%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ + ++V+ML ++EP ++TGG Q+ +F+++ ++++ ++ +L+
Sbjct: 131 KSLNKNNRQVWMLMEIEPSINVTGGLIGQE-NFDLDSIEIIQERLLEYLR---------K 180
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISK--VELSEEDIRTILETLLFDGKIEQINN---- 144
GP + +E+ I G+ + E +EDI+ I++ L++D KIEQI
Sbjct: 181 QGP--------TSYRELSLHIKQCGVIQKGSEFRDEDIKQIIQVLVYDQKIEQIQTGLGS 232
Query: 145 -IDGTD--MYR-AVSPYFAVTGLSTSPCGVCP 172
I G D +Y+ + + Y + PC CP
Sbjct: 233 MIGGADNIVYKLSNNKYPQQVYYTQIPCAHCP 264
>gi|302404176|ref|XP_002999926.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
gi|261361428|gb|EEY23856.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
Length = 390
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 73/213 (34%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ ++P TGG W+ DQ + F++ L + Y + +KR+ + +
Sbjct: 154 KNVEHPNKKMYIKASMQPSERATGGPWFTDQTLDEAFIEELQRVIYDY--IKRQSSYFHK 211
Query: 91 NG------------------------------------------------PLVAQRLACA 102
G PL A
Sbjct: 212 GGEARAAVPKKGIVKGGPPAGGRKRGAEQISDDGEAHAVGATQVDKTTYLPLPAGYKEYP 271
Query: 103 TPKEVRKFITDLGI-SKVELSEEDIRTILETLLFDGKIE--QINNIDGTDMYRAV----- 154
T +++ +FI+ GI ++ L +DI+ +++ L+FDG +E ++ G + RA
Sbjct: 272 TVRDIARFISQAGITTETTLGVDDIQKLVDVLVFDGLVEAIRVGGKHGLRVRRAAKQSLG 331
Query: 155 ---------------SPYFAVTGLSTSPCGVCP 172
+P G + +PCG CP
Sbjct: 332 NWAGQGADESGIERGAPEPYANGYTEAPCGRCP 364
>gi|392333133|ref|XP_003752804.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Rattus norvegicus]
gi|392353214|ref|XP_003751428.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Rattus norvegicus]
Length = 317
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 85 KTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILET--LLFDGKIEQI 142
K + P++ + + +P +V K + +L ISK EL+ EDIRTI T LL +G ++
Sbjct: 211 KALKSVANPMLHRDSSLISPHKVWKXLLELDISKTELAIEDIRTISNTMALLANGHMK-- 268
Query: 143 NNIDGTDMYRAVSP-YFAVTGLSTSPCGVC 171
+YR SP TGL +PC +C
Sbjct: 269 -------LYRTDSPTLLPTTGLVRAPCELC 291
>gi|46107790|ref|XP_380954.1| hypothetical protein FG00778.1 [Gibberella zeae PH-1]
Length = 383
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 76/215 (35%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+++ + P TGG WY DQ+ + F+D L + + F +KR+ + ++T
Sbjct: 146 KNVEHPNKKMFIKASIRPSDRATGGPWYTDQNLDEAFIDELQRVVFDF--IKRQSSYHST 203
Query: 91 NG---------------------------------------------------PLVAQRL 99
+G PL A
Sbjct: 204 HGGGAARTQVPKKGVVKGGMDKGKKRDASHMDEPPAKVPKTSPTATVKKDALLPLPAGYT 263
Query: 100 ACATPKEVRKFITDLGISK-VELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV---- 154
T +++ + ++ GI+ LSE D++ +++ L++D +E + + G YR
Sbjct: 264 GYPTVRDIARLLSASGITHNTILSEHDVQKLVDVLVWDNLVESV-KVAGKIGYRVSRVAK 322
Query: 155 -----------------SPYFAVTGLSTSPCGVCP 172
P V+ + +PCG CP
Sbjct: 323 QSLESWAGRDDPTGREGGPESFVSAFTEAPCGRCP 357
>gi|398018787|ref|XP_003862558.1| hypothetical protein, conserved [Leishmania donovani]
gi|322500788|emb|CBZ35865.1| hypothetical protein, conserved [Leishmania donovani]
Length = 448
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 49/163 (30%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL--------- 79
+ + F K++Y LF+++P +TGG Y ++ +V FVD ++ RF+
Sbjct: 124 EHRSFTNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSFD 183
Query: 80 QLKREKTANNT-----------------------------NGPLV-------AQRLACAT 103
Q+KR A + N P+V QR A
Sbjct: 184 QIKRHVEAVQSAAGGRGSGSAPPAAGLAANHPSSTSTQPYNLPVVFTMIDSAMQRPAGGG 243
Query: 104 PKEVRKFITDLGISKV----ELSEEDIRTILETLLFDGKIEQI 142
P + G S +LS+ D+RT++ TL+ DG +E +
Sbjct: 244 PSLSTSGMASAGSSYTFVAKQLSDLDLRTLVHTLVLDGVLEML 286
>gi|346325877|gb|EGX95473.1| DNA-directed RNA polymerase III subunit Rpc34 [Cordyceps militaris
CM01]
Length = 383
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 74/213 (34%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ + P TGG WY DQ+F+ F++ L + + F +KR+ + ++T
Sbjct: 146 KNVEHPNKKMYIKASIRPSDRATGGPWYTDQNFDDAFIEELQRVVFDF--IKRQSSYHST 203
Query: 91 NG-----------------------------------------------------PLVAQ 97
+ PL A
Sbjct: 204 HAGSGAARSQAPKKGVIQGGTERGKKRDASEMSKPPSKVSKTTPGTTPRKEAALLPLPAG 263
Query: 98 RLACATPKEVRKFITDLGIS-KVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV-- 154
+ +++ + ++ GI+ LSE+D+R +++ L++D IE + + G YR
Sbjct: 264 YTGYPSVRDIARLLSSSGITNNTILSEDDVRKLIDVLVWDNLIEPV-RVAGKIGYRVARV 322
Query: 155 ---------------SPYFAVTGLSTSPCGVCP 172
P + + +PCG CP
Sbjct: 323 VKQSTEPWAGREEPGGPEPYTSPYTEAPCGRCP 355
>gi|387592799|gb|EIJ87823.1| hypothetical protein NEQG_01895 [Nematocida parisii ERTm3]
gi|387595420|gb|EIJ93044.1| hypothetical protein NEPG_02000 [Nematocida parisii ERTm1]
Length = 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 38 KKVYMLFDLEPDRSLTGGTWY-QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVA 96
+KVYML+D P L G W+ Q+ + + FVD + Y ++ N+T +
Sbjct: 124 RKVYMLYDAIPSDDLGDGPWFTQEAELDTGFVDAIKNVAYEWI-------LNSTRSDGLP 176
Query: 97 QRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143
+ K V F+ IS V L+ +D++ IL+ L+++ K+ Q++
Sbjct: 177 PFESLPEVKHVHAFLLRAEISSVILTLDDVKRILDILVYERKLIQLD 223
>gi|15237811|ref|NP_197760.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|8809689|dbj|BAA97230.1| unnamed protein product [Arabidopsis thaliana]
gi|37202026|gb|AAQ89628.1| At5g23710 [Arabidopsis thaliana]
gi|332005818|gb|AED93201.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 39 KVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQR 98
K Y+ + EP LTGG WY D ++ ++ L +C L+ R++ +V
Sbjct: 77 KHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQR--------VVTLE 128
Query: 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM----YRAV 154
+ C F+ + +S + E IL+ L+ + K +N T + YR
Sbjct: 129 VLCGY------FVKEEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVCYRLT 182
Query: 155 SPYFA-----VTGLSTSPCGVCPD 173
F ++ PCGVCP
Sbjct: 183 GKKFGNGEPRAGAFASIPCGVCPH 206
>gi|110739405|dbj|BAF01613.1| hypothetical protein [Arabidopsis thaliana]
Length = 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 39 KVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQR 98
K Y+ + EP LTGG WY D ++ ++ L +C L+ R++ +V
Sbjct: 77 KHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQR--------VVTLE 128
Query: 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM----YRAV 154
+ C F+ + +S + E IL+ L+ + K +N T + YR
Sbjct: 129 VLCGY------FVKEEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVCYRLT 182
Query: 155 SPYFA-----VTGLSTSPCGVCPD 173
F ++ PCGVCP
Sbjct: 183 GKKFGNGEPRAGAFASIPCGVCPH 206
>gi|389593925|ref|XP_003722211.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438709|emb|CBZ12469.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 448
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 49/163 (30%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL--------- 79
+ + F K++Y LF+++P +TGG Y ++ +V FVD ++ RF+
Sbjct: 124 EHRSFTNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSFD 183
Query: 80 QLKREK---------------------TANNTNG--------PLVAQRLACATPKEV--- 107
Q+KR AN+ +G P+V + A + V
Sbjct: 184 QIKRHVEAVQSAASSRGSGSALPTAGLAANHPSGTSTQPYNLPVVFTMIDSAMQRHVGGG 243
Query: 108 ----RKFITDLGISKV----ELSEEDIRTILETLLFDGKIEQI 142
+T G S +LS+ D+RT++ TL+ DG +E +
Sbjct: 244 PSSSTSGMTSAGSSYAFVAKQLSDLDLRTLVHTLVLDGVLEML 286
>gi|310790201|gb|EFQ25734.1| RNA polymerase Rpc34 subunit [Glomerella graminicola M1.001]
Length = 396
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 78/219 (35%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK-------- 82
++ E K++++ + P TGG W+ D F+ F++ L + + +++ K
Sbjct: 153 KNVEHPNKRMFIKASMRPSERATGGPWFTDSAFDEAFIEELQRVIFDYVKRKSTYLSTGS 212
Query: 83 ---------------------------REKTANN--------------------TNGPLV 95
R++ A+ N PL
Sbjct: 213 SSSSAGATRTAVPKKGVLKGGLDAKANRKRAADEMSAADEKSSVPAVQPPRKAPVNLPLP 272
Query: 96 AQRLACATPKEVRKFITDLGI-SKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
A T +E+ +FI+ GI S L EED++ +++ L+FDG IE I + G YR
Sbjct: 273 AGFKEYPTVREIARFISQSGITSDTILGEEDMQKLIDVLVFDGLIEPI-RVAGRLGYRVT 331
Query: 155 -SPYFAVT--------------------GLSTSPCGVCP 172
+P + T G + +PCG CP
Sbjct: 332 RAPRQSTTNWAARQDGGPEEGGPEPFVNGYTEAPCGRCP 370
>gi|380480792|emb|CCF42228.1| RNA polymerase Rpc34 subunit [Colletotrichum higginsianum]
Length = 394
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 76/217 (35%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E K++++ + P TGG W+ D + F++ L + + +++ K + +
Sbjct: 153 KNVEHPNKRMFIKASMRPSERATGGPWFTDSALDEAFIEELQRVIFDYIKKKSTYLSTGS 212
Query: 91 NG-----------------------------------------------------PLVAQ 97
+G PL A
Sbjct: 213 SGTRTAVPKKGVLKGGLDAKGKKRGASEMSGVDDEAGAKSAVLAVQPPKKVPVNLPLPAG 272
Query: 98 RLACATPKEVRKFITDLGI-SKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV-S 155
T +E+ +FI+ GI S L EED++ +++ L+FDG IE I I G YR +
Sbjct: 273 YKEYPTVREIARFISQSGITSDTILGEEDMQKLIDVLVFDGLIEPI-RISGHLGYRVTRA 331
Query: 156 PYFAVT--------------------GLSTSPCGVCP 172
P + T G + +PCG CP
Sbjct: 332 PRQSTTNWAARQGGGPDEGGPEPFVNGYTEAPCGRCP 368
>gi|408391211|gb|EKJ70592.1| hypothetical protein FPSE_09237 [Fusarium pseudograminearum CS3096]
Length = 383
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 74/214 (34%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+++ + P TGG WY DQ+ + F+D L + + F +KR+ + ++T
Sbjct: 146 KNVEHPNKKMFIKASIRPSDRATGGPWYTDQNLDEAFIDELQRVVFDF--IKRQSSYHST 203
Query: 91 NG---------------------------------------------------PLVAQRL 99
+G PL A
Sbjct: 204 HGGGAARTQVPKKGVVKGGVDKGKKRDASHMDEPPAKVPKMSPTTTVKKDALLPLPAGYT 263
Query: 100 ACATPKEVRKFITDLGISK-VELSEEDIRTILETLLFD---------GKI---------E 140
T +++ + ++ GI+ LSE D++ +++ L++D GKI +
Sbjct: 264 GYPTVRDIARLLSASGITHNTILSEHDVQKLVDVLVWDNLVESVKVAGKIGFRVSRVAKQ 323
Query: 141 QINNIDGTD--MYRAVSPYFAVTGLSTSPCGVCP 172
+ + G D R P V+ + +PCG CP
Sbjct: 324 SLESWAGRDDPTGREGGPESFVSAFTEAPCGRCP 357
>gi|398408736|ref|XP_003855833.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
gi|339475718|gb|EGP90809.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
Length = 349
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVD-VLNQQCY------------- 76
+ +A ++ YML L P +TG +++ D + F D +LN +
Sbjct: 148 KSVKAPAQRTYMLSHLSPSEDVTGNSFFDAGDLDESFRDELLNLIVFWVRTDIEDIASST 207
Query: 77 --RFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISK----VELSEEDIRTIL 130
++ L+ + ++T A + T +E+ +F+T K L+ +I+ +
Sbjct: 208 RPKYRSLRPDLETDHTQLLYRAGTHSYPTAEEIHQFLTTSSAIKPTKAASLTVAEIQGCI 267
Query: 131 ETLLFDGKIEQINNIDGTDM-YRAV-----SPYFAV---------TGLSTSPCGVCP 172
+ L++D K+E I DG YR V P +V TGL+ +PCG CP
Sbjct: 268 DVLIWDDKLEPIRRHDGAGWGYRTVRGVSFKPPGSVFEEFEEAVGTGLTQAPCGHCP 324
>gi|82793544|ref|XP_728084.1| DNA-directed RNA polymerase III 34 kDa polypeptide [Plasmodium
yoelii yoelii 17XNL]
gi|23484251|gb|EAA19649.1| probable DNA-directed RNA polymerase iii 34 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 299
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 4 IASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDF 63
I+ ++Y +F + ++ ++Q + +K+Y+L+D+E + GG++Y+D +F
Sbjct: 121 ISXPPRIYTIFSI-ANKCCMFFFFFQVNNIHVKNRKMYILYDIEASEKVIGGSFYKDGEF 179
Query: 64 EVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSE 123
+ VD + + +L V +I L S S+
Sbjct: 180 NKKVVDYIRENICFYLYNNNNSNVT-----------------SVINYIKKLNNSVGYFSD 222
Query: 124 EDIRTILETLLFDGKIEQINNIDGTDM 150
DI +++TLLF+ +I+ N D ++
Sbjct: 223 NDIYRVIKTLLFEERIKIYKNNDNEEL 249
>gi|440297421|gb|ELP90115.1| hypothetical protein EIN_405290 [Entamoeba invadens IP1]
Length = 169
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 23/122 (18%)
Query: 57 WYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGI 116
+Y + +FVD ++ CY FL K + N +V +++ + GI
Sbjct: 26 FYTKTGLDGDFVDTISDHCYMFLLNKGGASVN-----------------DVYEYVRESGI 68
Query: 117 SKVELSEEDIRTILETLLFDGKIE--QINNIDG----TDMYRAVSPYFAVTGLSTSPCGV 170
S V++ +E+I ++L L+F+G E + + +G + +++ LS PCG
Sbjct: 69 STVDIKKEEILSLLNRLVFNGSAECSVVKSTNGSLYTSKIFKPSKMVAQTNPLSLVPCGN 128
Query: 171 CP 172
CP
Sbjct: 129 CP 130
>gi|322696633|gb|EFY88422.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Metarhizium acridum CQMa 102]
Length = 395
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 76/217 (35%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ + P TGG WY DQ+ + F++ L + + F++ + + ++
Sbjct: 152 KNVEHPNKKMYIKASIRPSDRATGGPWYTDQNLDEAFIEELQRVVFDFVKRQSGYRSTHS 211
Query: 91 NG-----------------------------------------------------PLVAQ 97
+G PL A
Sbjct: 212 SGGASARSQVPTKGVIKGTAADKGKKRDASEMSKPPAKAVKASAGATPRREAALLPLPAG 271
Query: 98 RLACATPKEVRKFITDLGIS-KVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVS- 155
A T +++ + ++ GI+ LSEED++ +++ L++D IE I I G YR
Sbjct: 272 YTAYPTVRDIARLLSSSGITNNTILSEEDVKKLVDVLVWDNLIEPI-KIAGRMGYRVCRV 330
Query: 156 --------------------PYFAVTGLSTSPCGVCP 172
P ++ + +PCG CP
Sbjct: 331 AKQSPQNWAGREDPTGRGGDPEPYLSPYTEAPCGKCP 367
>gi|123487163|ref|XP_001324886.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
gi|121907776|gb|EAY12663.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
Length = 285
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNG 92
K K+Y+L+D+ P +TGG WY D F FV+ L +Q+ T +
Sbjct: 141 IHEKKLKLYLLYDMPPSEEITGGVWYLDGTFNTTFVEQLIANSVNIVQVSGGITVKDMIE 200
Query: 93 PLVAQRLACA--TPKEVRKFITDLGISK 118
+ LA A T KE + IT + SK
Sbjct: 201 KIKLNTLAAAHITDKEAEQVITAMVHSK 228
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1 MSEIASKK-KVYMLFDLEPDRSLTGGTWYQDQDFEAS 36
++ I KK K+Y+L+D+ P +TGG WY D F +
Sbjct: 138 ITSIHEKKLKLYLLYDMPPSEEITGGVWYLDGTFNTT 174
>gi|146093093|ref|XP_001466658.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134071021|emb|CAM69700.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 448
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR 83
+ + F K++Y LF+++P +TGG Y ++ +V FVD ++ RF+ +R
Sbjct: 124 EHRSFTNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRR 178
>gi|402471876|gb|EJW05385.1| hypothetical protein EDEG_00049 [Edhazardia aedis USNM 41457]
Length = 234
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV 95
+ +K+Y+L+ + +TGG W+ D + + EF + + + ++L N P
Sbjct: 118 NNRKIYVLYSDKVCEDVTGGVWFNDGEIDDEFFNCVVKLVIKYLNDNYANEIYYKNFP-- 175
Query: 96 AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152
+ +E+ K I IS V+L+ D+ ++L+ +++D I+++ GT +YR
Sbjct: 176 -------SAEEIHKHIERCKISSVQLNLSDVESLLKVMVYDEYIQELETEVGT-LYR 224
>gi|154341062|ref|XP_001566484.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063807|emb|CAM39996.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 447
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR 83
+ + F K++Y LF+++P +TGG Y ++ +V FVD ++ RF+ +R
Sbjct: 124 EHRSFTNRAKRIYTLFNIDPSSHITGGAMYCGEELDVAFVDEWRRELTRFVSTRR 178
>gi|358390496|gb|EHK39901.1| hypothetical protein TRIATDRAFT_295978 [Trichoderma atroviride IMI
206040]
Length = 407
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ + P TGG WY DQD + F++ L + + F +KR+ + ++T
Sbjct: 152 KNVEHPNKKMYIKASIRPSDRATGGPWYTDQDLDEAFIEDLQRVVFDF--IKRQSSYHST 209
Query: 91 NG 92
+G
Sbjct: 210 HG 211
>gi|401415860|ref|XP_003872425.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488649|emb|CBZ23896.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 448
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR 83
+ + F K++Y LF+++P +TGG Y ++ +V FVD ++ RF+ +R
Sbjct: 124 EHRSFTNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRR 178
>gi|261196936|ref|XP_002624871.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
gi|239596116|gb|EEQ78697.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
Length = 363
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 51/184 (27%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK-------------- 82
++K+YML L+P +TGG W+ D + +F+ L ++ +
Sbjct: 154 QRKMYMLSGLQPSEEVTGGAWFTDGVLDADFIRGLGGWIEHWVSARSWYDRAAAERKAAK 213
Query: 83 ----REKTANNTNG--PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
R A P + T ++ I + G++ V + E I +LE L FD
Sbjct: 214 RQKIRPDNAKEEPQYLPYLPSYNGYPTVTDITNAINNSGLTPVTMGESSIAQLLEMLCFD 273
Query: 137 GKIEQINNIDGTDMYRAV----------------------------SPYFAVTGLSTSPC 168
G++ I+ DG Y++V S G++ +PC
Sbjct: 274 GRL--ISLRDGA-AYKSVKKPNQISLQRDLGLQTSDQTDQDKTDQDSLTLGGNGMTEAPC 330
Query: 169 GVCP 172
G CP
Sbjct: 331 GRCP 334
>gi|156087256|ref|XP_001611035.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis
T2Bo]
gi|154798288|gb|EDO07467.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis]
Length = 293
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 25 GTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKRE 84
G Q + +K+YMLF+++P R LTGG++Y + +F V+ + +Q +L
Sbjct: 135 GLVKQVTNVHQKSRKLYMLFNVKPARELTGGSFYFNGEFNEMLVEHIQEQVGAYL----- 189
Query: 85 KTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
+ ++ ++ F+ E+ EED+ +I++ L+ + K+
Sbjct: 190 ------------AKYQGSSLSQITNFLKTSDKISGEVLEEDVLSIIQILILEEKVYSAPT 237
Query: 145 IDGTDMY---RAVSPYFAVTGLSTSPCGVC 171
G +Y + + FA +PC C
Sbjct: 238 ASGDSIYIWAGSANVNFASKAFG-APCFKC 266
>gi|239609703|gb|EEQ86690.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ER-3]
gi|327355362|gb|EGE84219.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ATCC 18188]
Length = 363
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 51/184 (27%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK-------------- 82
++K+YML L+P +TGG W+ D + +F+ L ++ +
Sbjct: 154 QRKMYMLSGLQPSEDVTGGAWFTDGVLDADFIRGLGGWIEHWVSARSWYDRAAAERKAAK 213
Query: 83 ----REKTANNTNG--PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
R A P + T ++ I + G++ V + E I +LE L FD
Sbjct: 214 RQKIRPDNAKEEPQYLPYLPSYNGYPTVTDITNAINNSGLTPVTMGESSIAQLLEMLCFD 273
Query: 137 GKIEQINNIDGTDMYRAV----------------------------SPYFAVTGLSTSPC 168
G++ I+ DG Y++V S G++ +PC
Sbjct: 274 GRL--ISLRDGA-AYKSVKKPNQISLQRDLGLQTSDQTDQDKTDQDSLTLGGNGMTEAPC 330
Query: 169 GVCP 172
G CP
Sbjct: 331 GRCP 334
>gi|357511407|ref|XP_003625992.1| DNA-directed RNA polymerase III subunit rpc6 [Medicago truncatula]
gi|355501007|gb|AES82210.1| DNA-directed RNA polymerase III subunit rpc6 [Medicago truncatula]
Length = 338
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 39 KVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQR 98
K YM +LEP +TGG +Y D + F+D L + C + + + + T +
Sbjct: 90 KHYMAAELEPSEDITGGHFYSDGKLDTGFIDALKKVCLKCIFMHKVSTCDGC-------- 141
Query: 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
++I I E++ + I IL+TL+ D +I Q+ +
Sbjct: 142 ---------LEWIKKSEIFNTEVTGKQIEEILQTLVLDDEIMQMTS 178
>gi|297812521|ref|XP_002874144.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297319981|gb|EFH50403.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 230
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 39 KVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQR 98
K ++ + EP + LTGG WY D + ++ L +C L+ R + +V
Sbjct: 77 KHFLAMEFEPGKELTGGEWYIDGTLNLSKIEDLKVKCVMILERHRHR--------VVTLE 128
Query: 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI--NNIDGTDMYRAVSP 156
+ C F+ + +LS E + IL+ L+ D I ++ N ++ R
Sbjct: 129 VMCGY------FVKE-----EKLSVEQTKEILKNLVLDNVIMEVKSNGLNEFASTRIGEV 177
Query: 157 YFAVTG------------LSTSPCGVCPD 173
+ +TG ++ PCG CP
Sbjct: 178 CYKLTGKKSGNGEARAGAFASVPCGACPH 206
>gi|171695538|ref|XP_001912693.1| hypothetical protein [Podospora anserina S mat+]
gi|170948011|emb|CAP60175.1| unnamed protein product [Podospora anserina S mat+]
Length = 403
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 56/178 (31%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKR-------- 83
+ E +K+Y+ DL+P TGG W+ D + + F+ V+ + +++ +
Sbjct: 146 NVEMPNRKMYIRADLKPSERATGGPWFTDGELDEAFIKVIEGIIFEYIKTRSAYFSRGTV 205
Query: 84 ------------------EKTANNTNG-------------------------PLVAQRLA 100
++TA + + P+ A
Sbjct: 206 LPQRQPKKGVVTGDARGVKRTATDISNDDATPAPAPATKAAPPPPKGKPMYLPMPAGYKK 265
Query: 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE--QINNIDGTDMYRAVSP 156
T ++ +FI + +S L DI+ +++ L+FDG IE Q++N G YR V P
Sbjct: 266 YPTVNDITEFIHNQKVSTAMLGVADIQALVDVLVFDGLIEPIQVHNRKG---YRVVRP 320
>gi|340924020|gb|EGS18923.1| DNA-directed RNA polymerase III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 400
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 44/209 (21%)
Query: 8 KKVYMLFDLEPDRSLTGGTWYQDQDFEAS--------------KKKVYMLFDLEPDRSLT 53
KK+Y+ L P TGG W+ + + + + K Y +P +
Sbjct: 152 KKMYIKASLRPSERATGGPWFTEGELDTAFIQELEGIVFEYIKTKSAYRGSQPQPASAPK 211
Query: 54 GGTWYQD-QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFIT 112
G + + + D+ N + K+ P+ A T E+ KFI
Sbjct: 212 RGAIVGELRGTKRAAADITNDDSTAAPSSRNSKSFRTVFLPMPAGYKHYPTVAEIAKFIH 271
Query: 113 DLGIS-KVELSEEDIRTILETLLFDGKIE--QINNIDGTDMYRAVS----PYFA------ 159
D GI+ L E DI+ +++ L +DG IE ++N G + RA+ P+
Sbjct: 272 DTGITNNTTLGEADIQQLVDVLHYDGLIEPVRVNRRKGYRVTRAMRQDTVPFHKRQKDRE 331
Query: 160 ---------VTG-------LSTSPCGVCP 172
V G L+ +PCG CP
Sbjct: 332 AGIGLDQPLVVGAEPLSNALTEAPCGRCP 360
>gi|258597706|ref|XP_001348381.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
gi|255528800|gb|AAN36820.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
Length = 311
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN 88
Q + +K+Y+L+DLE + GG++Y D +F + VD + + +L N
Sbjct: 133 QVNNIHVKNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLY-----NNN 187
Query: 89 NTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
N++ P V +I L S SE DI +++TL ++ +I
Sbjct: 188 NSSVPSVIN------------YIKKLNNSVDYFSENDIYRVIKTLSYEERI 226
>gi|429856918|gb|ELA31807.1| DNA-directed RNA polymerase iii subunit rpc6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 389
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 23/102 (22%)
Query: 93 PLVAQRLACATPKEVRKFITDLGISK-VELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
PL A T +E+ +FI+ GI+ L EED++ +++ L+FDG +E + + G Y
Sbjct: 263 PLPAGFKEYPTVREIARFISQTGITTDTILGEEDVQKLIDVLVFDGLVEPV-RVAGRTGY 321
Query: 152 RAV---------------------SPYFAVTGLSTSPCGVCP 172
R P V G + +PCG CP
Sbjct: 322 RVCRAPRQSLQGWAGRQEGGADEGGPEPHVNGFTEAPCGRCP 363
Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT 86
++ E K++++ + P TGG W+ D F+ F++ L Q F Q+KR+ T
Sbjct: 140 KNVEHPNKRMFIKASMRPSERATGGPWFTDSAFDEAFIEDL--QRVIFDQIKRKST 193
>gi|71033063|ref|XP_766173.1| RNA polymerase subunit [Theileria parva strain Muguga]
gi|68353130|gb|EAN33890.1| RNA polymerase subunit, putative [Theileria parva]
Length = 295
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D +K+++L LEP +TGG++Y + +F V+ L +Q FL +NN
Sbjct: 141 DVNYKSRKLFILSTLEPSTQVTGGSFYDNGEFNELLVEKLQEQICSFL-------SNNQG 193
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
+ +++ F+ + I + EL E D+ I++ LL + KI
Sbjct: 194 SNI----------QDITTFLKETNIIRGELLETDVNRIIKLLLLENKI 231
>gi|300123760|emb|CBK25032.2| unnamed protein product [Blastocystis hominis]
Length = 170
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 35 ASKKKV-YMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLN 72
ASK K+ Y+L+D E + +TGG WY +Q+F++EF++V++
Sbjct: 113 ASKMKIMYILYDKELPKDITGGPWYVEQEFDLEFINVMS 151
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 4 IASKKKV-YMLFDLEPDRSLTGGTWYQDQDFE 34
IASK K+ Y+L+D E + +TGG WY +Q+F+
Sbjct: 112 IASKMKIMYILYDKELPKDITGGPWYVEQEFD 143
>gi|406865342|gb|EKD18384.1| DNA-directed RNA polymerase III subunit RPC6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 358
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 72/192 (37%), Gaps = 51/192 (26%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ---------- 80
+ E +K+++L L P TGG WY D + + EF++ + + + +Q
Sbjct: 143 KSVEHPTRKMFILSSLRPSERTTGGPWYTDSELDEEFINTVMRVLFEHIQNRTFYKSSLA 202
Query: 81 -------------------------LKREKTANNTNG----------PLVAQRLACATPK 105
+RE+ + P+ A T
Sbjct: 203 SPKAKKVHKKMTPEEIKALRAQGLGRRRERNEDGEAARKRRRIDAMLPMPADYQGYPTLA 262
Query: 106 EVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYF-----AV 160
E+ ++ ++ L+ DI+ +L+ + FD +I ++ + +G Y+A+
Sbjct: 263 ELTLWVENMNAFSQTLAANDIQQLLDIMCFDDRITRVISGEGVS-YKALRRSLRDEEECT 321
Query: 161 TGLSTSPCGVCP 172
+ L+ PCG CP
Sbjct: 322 SRLTEVPCGRCP 333
>gi|449015431|dbj|BAM78833.1| RNA polymerase III subunit C34 [Cyanidioschyzon merolae strain 10D]
Length = 371
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQD-FEVEFVDVLNQQCYRFLQLKREKTA 87
Q Q +K+YML +LEP R +TGG +Y ++ F+ EF+ L + +R L
Sbjct: 161 QVQSIRNKTRKLYMLAELEPSREVTGGPFYDEEGTFDHEFIHRLRELVWRRL-------- 212
Query: 88 NNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
+ P + E+ +F+ + + L D+ +L+T+ +D
Sbjct: 213 --LHTPWT-------SALELTQFLNQSNVLRFSLEVADLEQVLQTMCWD 252
>gi|68071909|ref|XP_677868.1| RNA polymerase subunit [Plasmodium berghei strain ANKA]
gi|56498146|emb|CAH99452.1| RNA polymerase subunit, putative [Plasmodium berghei]
Length = 280
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN 88
Q + +K+Y+L+D+E + GG++Y+D +F + VD + + +L
Sbjct: 126 QVNNIHVKNRKMYILYDIEASEKVIGGSFYKDGEFNKKVVDYIRENICFYLYNNNNSNVT 185
Query: 89 NTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148
V +I L S S+ DI +++TLLF+ +I+ N D
Sbjct: 186 -----------------SVINYIKKLNNSVGYFSDNDIYRVIKTLLFEDRIKIYKNNDNE 228
Query: 149 DM 150
++
Sbjct: 229 EL 230
>gi|322707597|gb|EFY99175.1| DNA-directed RNA polymerase III subunit RPC6 [Metarhizium
anisopliae ARSEF 23]
Length = 397
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 82/221 (37%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ + P TGG WY DQ+ + F++ L + + F +KR+ +T
Sbjct: 152 KNVEHPNKKMYIKASIRPSDRATGGPWYTDQNLDEAFIEELQRVVFDF--VKRQSGYRST 209
Query: 91 NG-------------------------------------PLVAQRL-ACATP-------- 104
+G P A + A ATP
Sbjct: 210 HGGGGASASARSQVPTKGVIKGTAADKGKKRDAGEMSKPPAKAVKASAGATPRREAALLP 269
Query: 105 -----------KEVRKFITDLGIS-KVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152
+++ + ++ GI+ LSEED++ +++ L++D IE I I G YR
Sbjct: 270 LPAGYTAYPTVRDIARLLSSSGITNNTILSEEDVKKLVDVLVWDNLIEPI-KIAGRMGYR 328
Query: 153 AVS---------------------PYFAVTGLSTSPCGVCP 172
P ++ + +PCG CP
Sbjct: 329 VSRVAKQSPQNWAGREDPTGRGGDPEPYLSPYTEAPCGKCP 369
>gi|358381396|gb|EHK19071.1| hypothetical protein TRIVIDRAFT_181834 [Trichoderma virens Gv29-8]
Length = 400
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ + P TGG WY DQD + F++ L + + F +KR+ + ++T
Sbjct: 152 KNVEHPNKKMYIKASIRPSDRATGGPWYTDQDLDEAFIEDLQRVVFDF--IKRQSSYHST 209
Query: 91 N 91
+
Sbjct: 210 H 210
>gi|336275631|ref|XP_003352569.1| hypothetical protein SMAC_01403 [Sordaria macrospora k-hell]
gi|380094459|emb|CCC07838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 411
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 69/233 (29%)
Query: 8 KKVYMLFDLEPDRSLTGGTWYQDQDFEAS--------------KKKVYMLFDLE------ 47
KK+Y+ +L P TGG W+ + + + + +K Y
Sbjct: 145 KKMYIKANLRPSDRATGGPWFTEGELDTAFINELQEIVFDFIKQKSTYTSLGGAVGTQGG 204
Query: 48 ----------PDRSLTGGTWYQDQDF--------EVEFVDVLNQQCYRFLQLKREKTANN 89
P + + GT +D E+ D K+ K A
Sbjct: 205 GGGGAQREKVPKKGVVQGTILHSEDAKGTKRSAGEISNDDTAAASAPTTTTAKKMKPAKP 264
Query: 90 TNGPLVAQRLACATPKEVRKFITDLGISK-VELSEEDIRTILETLLFDGKIEQINNIDGT 148
PL A + T ++ KFI GI+ LSE DI+ +++ L +DG +E + ++G
Sbjct: 265 QLLPLPAGYKSYPTVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPV-KVNGR 323
Query: 149 DMYRA-------------------------VSPYFAV----TGLSTSPCGVCP 172
YR ++ + V +GL +PCG CP
Sbjct: 324 KGYRVTRIPKQDTRTCNQRRLDHDPSKGGIITSFMGVEPSASGLMEAPCGRCP 376
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA 87
++ E KK+Y+ +L P TGG W+ + + + F++ L + + F++ K T+
Sbjct: 138 KNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFINELQEIVFDFIKQKSTYTS 194
>gi|402083524|gb|EJT78542.1| DNA-directed RNA polymerase III subunit RPC6 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 413
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 81/222 (36%), Gaps = 57/222 (25%)
Query: 8 KKVYMLFDLEPDRSLTGGTWYQDQDFEAS--KKKVYMLFDL------------------- 46
KK+Y+ +L+P TGG WY D + + + ++FD+
Sbjct: 156 KKMYIKANLKPSEKATGGPWYNDSTLDEAFIDELERVVFDIVKTQSTYKSHVNGTAAATG 215
Query: 47 --EPDRSLTGGTWYQDQDFEVEFVD----------VLNQQCYRFLQLKREKTANNTNGPL 94
P +++ G + + V+ V N PL
Sbjct: 216 ARAPKKAIKGSADQAKKGKKRSAVEAGVDGGEKPRVNGHAAATAEAAAVAAARKNVLRPL 275
Query: 95 VAQRLACATPKEVRKFITDLGISKVE-LSEEDIRTILETLLFDGKIEQINNI--DGTDMY 151
A T K++ I GI+K + L+E+DI+ +++ L+FDG IE +++ Y
Sbjct: 276 PAGYKGYPTTKQIAVLIGKAGIAKNQTLAEDDIQQLVDVLVFDGLIEPVHHGYEPRKPGY 335
Query: 152 RAVS---------------------PYFAVTGLSTSPCGVCP 172
RA + P GL+ +PCG CP
Sbjct: 336 RATAIPRLDDAATSDSNQLDVVRMGPPARENGLTEAPCGNCP 377
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQ 80
+ E KK+Y+ +L+P TGG WY D + F+D L + + ++
Sbjct: 149 KSVEHPNKKMYIKANLKPSEKATGGPWYNDSTLDEAFIDELERVVFDIVK 198
>gi|429961882|gb|ELA41426.1| hypothetical protein VICG_01531 [Vittaforma corneae ATCC 50505]
Length = 55
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 30/36 (83%)
Query: 107 VRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142
VR+FI+ GIS+V L+ ED+ T+++ L++DGKIE+I
Sbjct: 2 VREFISTSGISEVVLTVEDVNTLIDCLVYDGKIERI 37
>gi|367053057|ref|XP_003656907.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
gi|347004172|gb|AEO70571.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
Length = 376
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 93 PLVAQRLACATPKEVRKFITDLGISK-VELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
P+ A T E+ KFI D GI+ LSE DI+ +++ L +DG IE
Sbjct: 275 PMPAGYKHYPTVAEIAKFIHDTGITNNTTLSEADIQQLVDVLTYDGLIE----------- 323
Query: 152 RAVSPYFAVTGLSTSPCGVCP 172
P GL+ +PCG CP
Sbjct: 324 ----PPLG-NGLTEAPCGRCP 339
>gi|70915434|ref|XP_732170.1| RNA polymerase subunit [Plasmodium chabaudi chabaudi]
gi|56502791|emb|CAH82427.1| RNA polymerase subunit, putative [Plasmodium chabaudi chabaudi]
Length = 98
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQ-CYRFLQLKREKTA 87
Q + +K+Y+L+D+E + GG++Y+D +F + VD + + C+
Sbjct: 1 QVNNIHVKNRKMYILYDIEASEKVIGGSFYKDGEFNKKVVDYIRENICFYLYNNNNSNVT 60
Query: 88 NNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140
+ N +I L S S+ DI +++TLLF+ +I+
Sbjct: 61 SVIN------------------YIKKLNNSVGYFSDNDIYRVIKTLLFEERIK 95
>gi|340052857|emb|CCC47143.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 368
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQD---FEVEFVDVLNQQCYRFLQLKRE 84
F K++Y+LF+ EP +TGGT+Y +D +V FVD + + F+ +R
Sbjct: 149 FSNRAKRIYLLFEFEPSDEVTGGTFYGGEDSREMDVWFVDEMRRLILAFVAQRRS 203
>gi|156102106|ref|XP_001616746.1| DNA-directed RNA polymerases III 39 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805620|gb|EDL47019.1| DNA-directed RNA polymerases III 39 kDa polypeptide, putative
[Plasmodium vivax]
Length = 303
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 26/147 (17%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQ-CYRFLQLKREKTA 87
Q + +K+Y+L+DLE + GG++Y D +F + VD + + C+
Sbjct: 141 QVNNIHVKNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVL 200
Query: 88 NNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
+ N +I +L S S+ DI +++TLL++ +I+ N G
Sbjct: 201 SVIN------------------YIKNLNSSIGYFSDNDIYRVIKTLLYEERIKIYKN--G 240
Query: 148 TDMYRAVSPYF---AVTGLSTSPCGVC 171
D + Y+ + S PC C
Sbjct: 241 ND--EEIIYYYNNEKKSYFSNFPCFSC 265
>gi|407410700|gb|EKF33038.1| hypothetical protein MOQ_003101 [Trypanosoma cruzi marinkellei]
Length = 363
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 23/132 (17%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQD---FEVEFVDVLN---------------QQ 74
F K++Y+LF+ EP +TGGT+Y +D +V FVD + +Q
Sbjct: 126 FSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSLEQ 185
Query: 75 CYRFLQLKREKTANN----TNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTIL 130
+ L TA G V A + V + G SK +S+ D + ++
Sbjct: 186 ITQHLHESHGGTAAGEATLGGGDAVVVMTALPSGSVVTSANDNKGGSK-RISQRDAQLLV 244
Query: 131 ETLLFDGKIEQI 142
+TL+ DG ++ +
Sbjct: 245 QTLVLDGVLDCV 256
>gi|221060302|ref|XP_002260796.1| RNA polymerase subunit [Plasmodium knowlesi strain H]
gi|193810870|emb|CAQ42768.1| RNA polymerase subunit, putative [Plasmodium knowlesi strain H]
Length = 301
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 26/147 (17%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQ-CYRFLQLKREKTA 87
Q + +K+Y+L+DLE + GG++Y D +F + VD + + C+
Sbjct: 123 QVNNIHVKNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVL 182
Query: 88 NNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
+ N +I +L S S+ DI +++TLL++ +I+ N G
Sbjct: 183 SVIN------------------YIKNLNSSIGYFSDNDIYRVIKTLLYEERIKIYKN--G 222
Query: 148 TDMYRAVSPYF---AVTGLSTSPCGVC 171
D + Y+ S PC C
Sbjct: 223 ND--EEIIYYYNNEKKNYFSNFPCFSC 247
>gi|389585754|dbj|GAB68484.1| DNA-directed RNA polymerases III 39 kDa polypeptide, partial
[Plasmodium cynomolgi strain B]
Length = 286
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 26/147 (17%)
Query: 29 QDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQ-CYRFLQLKREKTA 87
Q + +K+Y+L+DLE + GG++Y D +F + VD + + C+
Sbjct: 133 QVNNIHVKNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVL 192
Query: 88 NNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
+ N +I +L S S+ DI +++TLL++ +I+ N G
Sbjct: 193 SVIN------------------YIKNLNSSIGYFSDNDIYRVIKTLLYEERIKIYKN--G 232
Query: 148 TDMYRAVSPYF---AVTGLSTSPCGVC 171
D + Y+ S PC C
Sbjct: 233 ND--EEIIYYYNNEKKNYFSNFPCFSC 257
>gi|302927723|ref|XP_003054557.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
gi|256735498|gb|EEU48844.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
Length = 352
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+++ + P TGG WY DQ+ + F++ L + + +L+L+ + +
Sbjct: 143 KNVEHPNKKMFIKASIRPSDRATGGPWYTDQNLDEAFIEELQRFVFDYLKLQSSYHSTHG 202
Query: 91 NG 92
G
Sbjct: 203 GG 204
>gi|350295771|gb|EGZ76748.1| RNA polymerase Rpc34 [Neurospora tetrasperma FGSC 2509]
Length = 399
Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ +L P TGG W+ + + + F++ L + + F++ K T++
Sbjct: 138 KNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFINELQEIVFDFIKQKSTYTSHGG 197
Query: 91 NG 92
G
Sbjct: 198 GG 199
>gi|361124834|gb|EHK96901.1| putative DNA-directed RNA polymerase III subunit rpc6 [Glarea
lozoyensis 74030]
Length = 393
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 57/192 (29%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK--------------- 82
+K+++ L P TGG+WY D + + F+ + Y ++ K
Sbjct: 178 RKMWIKAHLRPSERATGGSWYTDGELDEVFIQQICDLLYAHIKQKSFYFSSSAYKKSSKG 237
Query: 83 ------REKTANN-----TNG---------------------PLVAQRLACATPKEVRKF 110
+E +A + G P+ A E+ F
Sbjct: 238 GKKPSLKEASAARDKVLASKGLDKPEIDDERSSRSRKYDAYFPMPADYNGYPNVDELTGF 297
Query: 111 ITDLGISKVELSEEDIRTILETLLFDGKIEQI--NNIDGTDM---YRAV-----SPYFAV 160
I ++GI+ L +I+ +L+ + FDGKIE++ + +G + Y+A +
Sbjct: 298 IHNIGITSQLLVSSEIQQLLDIMCFDGKIERVVMGSYEGKEASIGYKATRRTLRDEHELG 357
Query: 161 TGLSTSPCGVCP 172
+ L+ +PCG CP
Sbjct: 358 SVLTEAPCGRCP 369
>gi|119188853|ref|XP_001245033.1| hypothetical protein CIMG_04474 [Coccidioides immitis RS]
Length = 289
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 37 KKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK 82
++K+YML L+P +TGG W+ D + +F+ L R++ +
Sbjct: 154 QRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSAR 199
>gi|72387117|ref|XP_843983.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175983|gb|AAX70106.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800515|gb|AAZ10424.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261327110|emb|CBH10086.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 355
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQD---FEVEFVDVLNQQ 74
F K++Y+LF+ EP +TGGT+Y +D ++ FVD + ++
Sbjct: 128 FSNRAKRIYLLFEFEPSDEVTGGTFYGGEDSREMDIGFVDEMRRR 172
>gi|71652514|ref|XP_814912.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879926|gb|EAN93061.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 363
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQD---FEVEFVD---------VLNQQCYRFLQ 80
F K++Y+LF+ EP +TGGT+Y +D +V FVD V + Q
Sbjct: 126 FSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSLEQ 185
Query: 81 LKREKTANNTNGPL------VAQRLACATPKEVRKFITDLGISKV---ELSEEDIRTILE 131
+ + ++ +G V + T +T +K +S+ D + +++
Sbjct: 186 ITQHLHESHGSGAAGEATLGVGDAVVVVTALPSGSVVTSANDNKGGNKRISQRDAQLLVQ 245
Query: 132 TLLFDGKIEQI 142
TL+ DG ++ +
Sbjct: 246 TLVLDGVLDCV 256
>gi|320591601|gb|EFX04040.1| DNA-directed RNA polymerase 3 subunit [Grosmannia clavigera kw1407]
Length = 453
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
KK+Y+ L P TGG WY D F+ F+D L + + ++ R + G +
Sbjct: 152 KKMYIKATLRPSERATGGPWYTDDTFDEAFIDQLQRVVFDLIR-DRSSYLSRHGGAISRG 210
Query: 98 RLACATPKEVRK 109
A AT ++ +K
Sbjct: 211 GAAGATARQPKK 222
>gi|409046494|gb|EKM55974.1| hypothetical protein PHACADRAFT_256971 [Phanerochaete carnosa
HHB-10118-sp]
Length = 307
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 58 YQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGIS 117
+ +Q FE EF ++L R L +++ + G ++A+R+AC PK +R+ I ++
Sbjct: 92 WTEQLFEDEFYNLL-----RHLGVEQYHVLGHCWGGMLAERIACKRPKGLRRLILTDSLA 146
Query: 118 KVELSEEDIRTILETL 133
+E E R +L L
Sbjct: 147 SMETWAESARKLLGKL 162
>gi|403221005|dbj|BAM39138.1| DNA-directed RNA polymerase III [Theileria orientalis strain
Shintoku]
Length = 260
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D +K+++L LEP +TGG++Y + +F V+ L +Q FL + N
Sbjct: 110 DIHHKNRKLFILSTLEPSIDITGGSFYLNGEFNELLVEKLQEQIGLFL-------SKNIG 162
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139
AT ++ ++ + + EL E+D+ ++++ L+ + K+
Sbjct: 163 ----------ATIDQILSYLKSSKLIQGELVEKDVYSVIKLLILENKV 200
>gi|71403489|ref|XP_804539.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70867566|gb|EAN82688.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 363
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQD---FEVEFVD 69
F K++Y+LF+ EP +TGGT+Y +D +V FVD
Sbjct: 126 FSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVD 165
>gi|407850126|gb|EKG04637.1| hypothetical protein TCSYLVIO_004301 [Trypanosoma cruzi]
Length = 363
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 33 FEASKKKVYMLFDLEPDRSLTGGTWYQDQD---FEVEFVD 69
F K++Y+LF+ EP +TGGT+Y +D +V FVD
Sbjct: 126 FSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVD 165
>gi|358332161|dbj|GAA50865.1| DNA-directed RNA polymerase III subunit RPC6 [Clonorchis sinensis]
Length = 1081
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 76/227 (33%), Gaps = 92/227 (40%)
Query: 7 KKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVE 66
K+KVY+L DL+P L T + + + E
Sbjct: 859 KQKVYLLIDLQPSEKLAANTLFAGES-----------------------------GVDGE 889
Query: 67 FVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFI--------------- 111
FV +L C ++LQ + A N PL + + + +E+ +FI
Sbjct: 890 FVAILRTACLKYLQ-DKTNIAANIADPLERRNASYVSVEEIHRFISNARICNKQPNGDVE 948
Query: 112 ---------------------TDLGIS------------KVELSEEDIRTILETLLFDGK 138
TD+ I+ KV ++ +D++ +L+ L + G+
Sbjct: 949 YNMSLVLMFELALNASVCRRVTDITINSYFMLFRTAVTLKVTMTLQDVQCVLDALKYGGE 1008
Query: 139 IEQI------NNIDGTD--------MYRAVSPYFAVTGLSTSPCGVC 171
+E NI + MYR + GL+ PC VC
Sbjct: 1009 LESRITSEIDRNISASSGSPSPMRTMYRLAPQTASTAGLAHLPCTVC 1055
>gi|321259858|ref|XP_003194649.1| DNA-directed RNA polymerase iii 34 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317461121|gb|ADV22862.1| DNA-directed RNA polymerase iii 34 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 557
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 41 YMLFDLEPDRSLTGGTWYQD-QDFEVEFVDVLNQQCYRFLQLKREKT-ANNTNGPLVAQR 98
Y+L L+ ++GG W+ D ++++ V+ + C L R T +N A+
Sbjct: 146 YILAHLKLPEEISGGVWFDDNKEYDQGLVETI---CAVLLNRVRTATYVDNKKRSEEAKS 202
Query: 99 L------------ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID 146
L + TP +R ++ LG++ LS +++ + L DG +E I +
Sbjct: 203 LVPNALNTSTKYHSLLTPMALRTYVNKLGVTSATLSVKNVMECMRALELDGLVEVIKPVG 262
Query: 147 GTDM 150
G +
Sbjct: 263 GVHL 266
>gi|85112653|ref|XP_964380.1| hypothetical protein NCU00727 [Neurospora crassa OR74A]
gi|28926160|gb|EAA35144.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 410
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN 88
++ E KK+Y+ +L P TGG W+ + + + F++ L + + F++ K T++
Sbjct: 138 KNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFINELQEIVFDFIKQKSTYTSH 195
>gi|349699705|ref|ZP_08901334.1| TonB-dependent receptor [Gluconacetobacter europaeus LMG 18494]
Length = 773
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 21 SLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGT--WYQDQDFEVEFVDVLNQQCYRF 78
++ GG W+++ DFE +++ + L D+ TG + W+++ FE ++ N + Y+F
Sbjct: 389 TIEGGFWFENNDFEQARR----FYPLSADK-YTGSSVHWFRNNPFETQWQSAFNTKTYQF 443
>gi|336463706|gb|EGO51946.1| hypothetical protein NEUTE1DRAFT_89784 [Neurospora tetrasperma FGSC
2508]
Length = 398
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
++ E KK+Y+ +L P TGG W+ + + + F++ L + + F+ ++K+ +
Sbjct: 138 KNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFINELQEIVFDFI---KQKSTYTS 194
Query: 91 NGPLVAQR 98
+G QR
Sbjct: 195 HGGGAQQR 202
>gi|405121157|gb|AFR95926.1| DNA-directed RNA polymerase III 34 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 561
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 41 YMLFDLEPDRSLTGGTWYQD-QDFEVEFVDVLNQQCYRFLQLKR------EKTANNTNGP 93
Y+L L+ ++GG W+ D ++++ V+ + C L R +K +
Sbjct: 146 YILAHLKLPEEISGGVWFDDNKEYDQGLVETI---CAVLLNRVRTATYVDDKKRSEEAKS 202
Query: 94 LVAQRLACA-------TPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID 146
LV L + TP +R ++ LG++ LS +++ + L DG +E + +
Sbjct: 203 LVPNALNTSSKYHSLLTPMALRTYVNKLGVTSATLSVKNVMECMRALELDGLVEVVKPVG 262
Query: 147 GTDM 150
G +
Sbjct: 263 GVHL 266
>gi|403341499|gb|EJY70054.1| Uncharacterized protein containing DHHC-type Zn finger [Oxytricha
trifallax]
Length = 753
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 24/154 (15%)
Query: 14 FDLEPDRSLTGGTWYQDQDFEASKKKVYM--------------LFDLEPDRSLTGGTWYQ 59
F+ D S T QD+E+SKK +Y F ++ G Y
Sbjct: 126 FNSNYDDSALKHTSSAIQDYESSKK-IYQNRQEKLRKREVSERCFQCIENKDKQGLMRYL 184
Query: 60 DQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKV 119
DQ+ + VD+L+ + Y L + K + PLV + T +++K++
Sbjct: 185 DQNLAISIVDILDGRGYTLLHMVCFKNQEDMIFPLVERVKEIFTETQIKKWVN------- 237
Query: 120 ELSEEDIRTILETLLFDGKIEQINNI--DGTDMY 151
+EED T L F G I I + +G DMY
Sbjct: 238 HKTEEDGFTALHFASFRGNINAIQLLLDNGADMY 271
>gi|58268956|ref|XP_571634.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112798|ref|XP_774942.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257590|gb|EAL20295.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227869|gb|AAW44327.1| DNA-directed RNA polymerase iii 34 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 559
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 41 YMLFDLEPDRSLTGGTWYQD-QDFEVEFVDVLNQQCYRFLQLKR------EKTANNTNGP 93
Y+L L+ ++GG W+ D ++++ V+ + C L R +K +
Sbjct: 146 YILAHLKLPEEISGGVWFDDNKEYDQGLVETI---CAVLLNRVRTATYVDDKKRSQEAKS 202
Query: 94 LVAQRLACA-------TPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNID 146
LV L + TP +R ++ LG++ LS +++ + L DG +E + +
Sbjct: 203 LVPNALNTSSKYYSLLTPMALRTYVNKLGVTSATLSVKNVMECMRALELDGLVEVVKPVG 262
Query: 147 GTDM 150
G +
Sbjct: 263 GVHL 266
>gi|452983857|gb|EME83615.1| hypothetical protein MYCFIDRAFT_203692 [Pseudocercospora fijiensis
CIRAD86]
Length = 327
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 103 TPKEVRKFITDLGISK----VELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSP-- 156
T +E+ F+ K L+ +I+ ++ L +D K+E+I N +GT YR V
Sbjct: 214 TAEEIHNFLVTSNAIKPTKAASLTVHEIQGCIDVLCWDEKLEKIMNGEGTWGYRTVRGVT 273
Query: 157 ----------YFAV--TGLSTSPCGVCP 172
Y V TGL+ +PCG CP
Sbjct: 274 FKPPGANYDDYEEVVGTGLTQAPCGRCP 301
>gi|423610256|ref|ZP_17586117.1| dihydroxy-acid dehydratase [Bacillus cereus VD107]
gi|401249573|gb|EJR55879.1| dihydroxy-acid dehydratase [Bacillus cereus VD107]
Length = 557
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ FV + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFVAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>gi|423524271|ref|ZP_17500744.1| dihydroxy-acid dehydratase [Bacillus cereus HuA4-10]
gi|401170114|gb|EJQ77355.1| dihydroxy-acid dehydratase [Bacillus cereus HuA4-10]
Length = 557
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ FV + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFVAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>gi|386821114|ref|ZP_10108330.1| molybdenum cofactor synthesis domain [Joostella marina DSM 19592]
gi|386426220|gb|EIJ40050.1| molybdenum cofactor synthesis domain [Joostella marina DSM 19592]
Length = 398
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 20 RSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL 79
RS GG + ++ +A K L E R TG D D + VL ++ FL
Sbjct: 66 RSHQGGFYTIKEEIQAGDSKDIKLEVGEGARIFTGAQVPDDADNVIMKEHVLEKEEQIFL 125
Query: 80 QLKREKTANNTNGPLVAQRLACATPK------EVRKFITDLGISKVELSEEDIRTILET 132
Q K EK G L+ ++ A A PK F+ LGI+KV+++++ IL T
Sbjct: 126 QKKTEKNNIRIPGELI-KKGALALPKGTLLNSAALAFLIGLGIAKVKINKKPSVAILIT 183
>gi|402221960|gb|EJU02028.1| hypothetical protein DACRYDRAFT_22420 [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 53 TGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFIT 112
T GT +Q+ F+ E V + + + LQ+KR ++ ++A R A ATP E R+ +
Sbjct: 12 TLGTLFQNDSFKFEMVGLTPENKHYNLQIKRVDGEDHVLAFIIAPRTAYATPSEFRRALK 71
Query: 113 DLG 115
G
Sbjct: 72 QSG 74
>gi|293332023|ref|NP_001168568.1| uncharacterized protein LOC100382351 [Zea mays]
gi|223949221|gb|ACN28694.1| unknown [Zea mays]
gi|413950365|gb|AFW83014.1| hypothetical protein ZEAMMB73_193969 [Zea mays]
Length = 187
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 25/157 (15%)
Query: 22 LTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQL 81
+ G + D +K++M D + +TGGTWY D + + V + C Q
Sbjct: 23 VASGLLKEVSDVRHRSRKIFMATDFQSFAEITGGTWYHDGRLDTDAVSTARRCC----QA 78
Query: 82 KREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ 141
+ E RL AT + + I + + + ++ I++T++ + +++
Sbjct: 79 QVE-------------RLGAATAQMIHHDILKED-PRAGYTIDKVKDIIKTMVLE-EVKS 123
Query: 142 INNIDGTDMYRAVSPYFAVTG------LSTSPCGVCP 172
D + + Y VTG + CG+CP
Sbjct: 124 TGTRDFSAVMAGTMCYRLVTGAPQGGMMEGIHCGICP 160
>gi|67467108|ref|XP_649674.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56466173|gb|EAL44299.1| hypothetical protein EHI_147230 [Entamoeba histolytica HM-1:IMSS]
gi|449706461|gb|EMD46301.1| Hypothetical protein EHI5A_156760 [Entamoeba histolytica KU27]
Length = 151
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 56 TWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLG 115
++ + +FV L+ + FL N G AT E ++ + G
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLL--------NKGG---------ATVIETYDYVRESG 58
Query: 116 ISKVELSEEDIRTILETLLFDGKIE------QINNIDGTDMYRAVSPYFAVTGLSTSPCG 169
IS V++ +E+I ++LE L++ G E +++ G+ +++ V LS PC
Sbjct: 59 ISNVDIKKEEILSLLERLVYLGNAEVSVAKNSNSSLYGSKVFKPVKFMVGRCPLSEVPCY 118
Query: 170 VCP 172
CP
Sbjct: 119 NCP 121
>gi|167393313|ref|XP_001740524.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165895355|gb|EDR23068.1| hypothetical protein EDI_143800 [Entamoeba dispar SAW760]
Length = 151
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 56 TWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLG 115
++ + +FV L+ + FL N G AT E ++ + G
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLL--------NKGG---------ATVIETYDYVRESG 58
Query: 116 ISKVELSEEDIRTILETLLFDGKIEQI------NNIDGTDMYRAVSPYFAVTGLSTSPCG 169
IS V++ +E+I ++LE L++ G E +++ G+ +++ V LS PC
Sbjct: 59 ISNVDIKKEEILSLLERLVYLGNAEVSVAKNGNSSLYGSKIFKPVKFMVGRCPLSEVPCY 118
Query: 170 VCP 172
CP
Sbjct: 119 NCP 121
>gi|407039037|gb|EKE39429.1| hypothetical protein ENU1_128820 [Entamoeba nuttalli P19]
Length = 151
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 56 TWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLG 115
++ + +FV L+ + FL N G AT E ++ + G
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLL--------NKGG---------ATVIETYDYVRESG 58
Query: 116 ISKVELSEEDIRTILETLLFDGKIEQI------NNIDGTDMYRAVSPYFAVTGLSTSPCG 169
IS V++ +E+I ++LE L++ G E +++ G+ +++ V LS PC
Sbjct: 59 ISNVDIKKEEILSLLERLVYLGNAEVSVAKNGNSSLYGSKVFKPVKFMVGRCPLSEVPCY 118
Query: 170 VCP 172
CP
Sbjct: 119 NCP 121
>gi|251796553|ref|YP_003011284.1| S-layer protein [Paenibacillus sp. JDR-2]
gi|247544179|gb|ACT01198.1| S-layer domain protein [Paenibacillus sp. JDR-2]
Length = 1585
Score = 35.8 bits (81), Expect = 6.6, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
DF S+ +VY P ++ G Q F V +D + YR + + E TA+ T
Sbjct: 1033 DFAVSRYEVYQDGVAAPIATVDGNAVRQ---FTVTNLDPNTEYAYRVVAVDGEGTASETL 1089
Query: 92 GPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151
GP+ + LA E T+L +S V I + + + + G D+Y
Sbjct: 1090 GPVQLRTLAADA--EAPSVPTNLHVSNVTSQSAVIS-------WSAATDNV-GVTGYDVY 1139
Query: 152 RAVSPYFAVTGLSTSPCGVCPD 173
S VTG S + G+ PD
Sbjct: 1140 AGDSKQATVTGTSYTATGLTPD 1161
>gi|84998828|ref|XP_954135.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34 )
[Theileria annulata]
gi|65305133|emb|CAI73458.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34
homologue), putative [Theileria annulata]
Length = 476
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 32 DFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTN 91
D +K+++L LEP +TGG++Y + +F V+ L +Q FL +NN
Sbjct: 141 DVNYKSRKLFILSSLEPSTQITGGSFYNNGEFNELLVEKLQEQICSFL-------SNNQG 193
Query: 92 GPLVAQRLACATPKEVRKFITDLGISK----VELSEEDIRTILETLLFDGKI 139
L +R + ++ EL E D+ I++ L+ + KI
Sbjct: 194 SNLQQIITFLKETNIIRGLYIHIYWNRDKILQELLETDVNRIIKLLILENKI 245
>gi|357610723|gb|EHJ67114.1| putative ribosomal RNA methyltransferase [Danaus plexippus]
Length = 847
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 1 MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQD 60
+S+I + +++ M+ D +PD L +D D E KK ++ +D+E + + G +Y+D
Sbjct: 407 LSDIKNTQQLNMIVDQQPDIVLEK----EDSDDELKKKAKFVKYDIEESKLDSSGLFYKD 462
Query: 61 QDFEVEF 67
D E+E
Sbjct: 463 SDSELEM 469
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,733,175,895
Number of Sequences: 23463169
Number of extensions: 106067149
Number of successful extensions: 247711
Number of sequences better than 100.0: 394
Number of HSP's better than 100.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 246583
Number of HSP's gapped (non-prelim): 862
length of query: 173
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 41
effective length of database: 9,262,057,059
effective search space: 379744339419
effective search space used: 379744339419
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)