BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy521
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IAH|A Chain A, Crystal Structure Of The Ferripyoverdine Receptor Of The
           Outer Membrane Of Pseudomonas Aeruginosa Bound To
           Ferripyoverdine.
 pdb|2O5P|A Chain A, Crystal Structure Of The Full Length Ferric Pyoverdine
           Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
           In Its Apo Form
 pdb|2O5P|B Chain B, Crystal Structure Of The Full Length Ferric Pyoverdine
           Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
           In Its Apo Form
 pdb|2W16|A Chain A, Structures Of Fpva Bound To Heterologous Pyoverdines
 pdb|2W16|B Chain B, Structures Of Fpva Bound To Heterologous Pyoverdines
 pdb|2W6T|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
 pdb|2W6T|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
 pdb|2W6U|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(G173)-Fe Complex
 pdb|2W6U|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(G173)-Fe Complex
 pdb|2W75|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Apo-Fpva
 pdb|2W75|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Apo-Fpva
 pdb|2W76|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
 pdb|2W76|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
 pdb|2W77|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
 pdb|2W77|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
 pdb|2W78|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
 pdb|2W78|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
           Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
          Length = 772

 Score = 30.4 bits (67), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 1   MSEIASKKKVY---MLFDLEPDRSLTGGTWYQDQDFEASK-KKVYMLFDLEPDRS 51
           M     K  VY   + FDL PD  LT G  YQD D + S     + LFD + +R+
Sbjct: 279 MDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRN 333



 Score = 29.6 bits (65), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 28  YQDQ----DFEASKKKVY---MLFDLEPDRSLTGGTWYQDQD 62
           YQD+    D    K  VY   + FDL PD  LT G  YQD D
Sbjct: 272 YQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDND 313


>pdb|1XKH|A Chain A, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
           Aeruginosa Pao1 Bound To Pyoverdine
 pdb|1XKH|B Chain B, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
           Aeruginosa Pao1 Bound To Pyoverdine
 pdb|1XKH|C Chain C, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
           Aeruginosa Pao1 Bound To Pyoverdine
          Length = 687

 Score = 30.0 bits (66), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 14  FDLEPDRSLTGGTWYQDQDFEASK-KKVYMLFDLEPDRS 51
           FDL PD  LT G  YQD D + S     + LFD + +R+
Sbjct: 210 FDLNPDTXLTVGADYQDNDPKGSGWSGSFPLFDSQGNRN 248



 Score = 30.0 bits (66), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 28  YQDQ----DFEASKKKVY---MLFDLEPDRSLTGGTWYQDQD 62
           YQD+    D    K  VY   + FDL PD  LT G  YQD D
Sbjct: 187 YQDKHSFXDHYERKTSVYYGILEFDLNPDTXLTVGADYQDND 228


>pdb|2V4J|A Chain A, The Crystal Structure Of Desulfovibrio Vulgaris
           Dissimilatory Sulfite Reductase Bound To Dsrc Provides
           Novel Insights Into The Mechanism Of Sulfate Respiration
 pdb|2V4J|D Chain D, The Crystal Structure Of Desulfovibrio Vulgaris
           Dissimilatory Sulfite Reductase Bound To Dsrc Provides
           Novel Insights Into The Mechanism Of Sulfate Respiration
          Length = 437

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 25  GTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRF 78
           GTW  D   +A   K Y+  + +P+     G  +   D E E V+    +C ++
Sbjct: 238 GTWKDDIKIDAEAVKAYVAGEFKPNAGAHSGRDWGKFDIEAEVVNRCPSKCMKW 291


>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
          Length = 494

 Score = 29.3 bits (64), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 13  LFDLEPDR--SLTGGTWYQDQDFEASKKKVYMLF--DLEPDRSLTGGTWYQDQDFEV--E 66
           LF+L P++  +LTG    +++    ++ KV +     +E D  L G    +D    V  E
Sbjct: 75  LFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIEND-LLAGRISLEDVSLIVFDE 133

Query: 67  FVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLAC--ATPKEVRKFITDLGISKVELSEE 124
               +    Y F+  + ++ A N   PLV    A   +TP+++ + I +LGI  +E   E
Sbjct: 134 AHRAVGNYAYVFIAREYKRQAKN---PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSE 190

Query: 125 ---DIRTILETLLFD 136
              D+R  ++ + F+
Sbjct: 191 NSPDVRPYVKGIRFE 205


>pdb|3AIB|A Chain A, Crystal Structure Of Glucansucrase
 pdb|3AIB|B Chain B, Crystal Structure Of Glucansucrase
 pdb|3AIB|C Chain C, Crystal Structure Of Glucansucrase
 pdb|3AIB|D Chain D, Crystal Structure Of Glucansucrase
 pdb|3AIB|G Chain G, Crystal Structure Of Glucansucrase
 pdb|3AIB|E Chain E, Crystal Structure Of Glucansucrase
 pdb|3AIB|F Chain F, Crystal Structure Of Glucansucrase
 pdb|3AIB|H Chain H, Crystal Structure Of Glucansucrase
 pdb|3AIC|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
          Length = 844

 Score = 26.2 bits (56), Expect = 9.9,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 22/101 (21%)

Query: 19  DRSLTGGTWYQDQDFEASKKKVYMLFD-------LEPDRSLTGGTWYQDQDFEVEFVDVL 71
           D  LT  +WY+ +         Y+L D        E D      TW+ DQ+ + ++V+ +
Sbjct: 20  DHYLTAESWYRPK---------YILKDGKTWTQSTEKDFRPLLMTWWPDQETQRQYVNYM 70

Query: 72  NQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFIT 112
           N       QL   +T N    PL     A     ++ + IT
Sbjct: 71  NA------QLGIHQTYNTATSPLQLNLAAQTIQTKIEEKIT 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,165,352
Number of Sequences: 62578
Number of extensions: 198931
Number of successful extensions: 413
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 16
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)