BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy521
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VD25|RPC6_DROME Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila
melanogaster GN=CG5380 PE=2 SV=1
Length = 293
Score = 183 bits (465), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKR 187
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
GPL ++++C T EV+KFI+DLGISKV L+E D+ TIL+T+++DG E++ DG+ +
Sbjct: 188 EGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFV 247
Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
YRAV+ TGL PCG+CP
Sbjct: 248 YRAVNAPLPPTGLVQMPCGICP 269
>sp|Q2T9S3|RPC6_BOVIN DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus
GN=POLR3F PE=2 SV=1
Length = 316
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
>sp|Q9H1D9|RPC6_HUMAN DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens
GN=POLR3F PE=1 SV=1
Length = 316
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
>sp|Q921X6|RPC6_MOUSE DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus
GN=Polr3f PE=1 SV=1
Length = 316
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 10/148 (6%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TG+ +PCG+CP
Sbjct: 264 DGHMKLYRAVNPILPPTGVVRAPCGLCP 291
>sp|P91529|RPC6_CAEEL Probable DNA-directed RNA polymerase III subunit RPC6
OS=Caenorhabditis elegans GN=W09C3.4 PE=3 SV=1
Length = 296
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
+ +K Y+LF +EPD SLTGGT+Y DQ + E ++ L C + +R+ + +
Sbjct: 136 GTTRKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNI 195
Query: 95 VAQRLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
QR A P+E+ +FIT+ + V LS ED+ ILE + DG IE+ DG RA
Sbjct: 196 QMQREASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTIER--RADGK--IRA 251
Query: 154 VSPYFAVTGLSTSPCGVCP 172
P +++ L + PC +CP
Sbjct: 252 CPPRSSISPLVSVPCAICP 270
>sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III subunit rpc6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc6 PE=2 SV=1
Length = 301
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP-LV- 95
+K+YML+DL P LTGG W+ DQ+ +VEF++ L + YR++ K GP LV
Sbjct: 142 RKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVW 201
Query: 96 -AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ T ++ ++ I+KV+LS ++ ++++ L++DGK+E+ + DG YRA+
Sbjct: 202 GPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKVEKRS--DGAS-YRAI 258
Query: 155 SPYFA-VTGLSTSPCGVCP 172
+ + SPCG CP
Sbjct: 259 RVNNENIDAFTESPCGNCP 277
>sp|P32910|RPC6_YEAST DNA-directed RNA polymerase III subunit RPC6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC34 PE=1
SV=1
Length = 317
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ E T N NG
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFI---SENTFPNGFKNFENG 201
Query: 93 PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
P A +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ +
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH--- 258
Query: 148 TDMYRA 153
D YR
Sbjct: 259 -DCYRV 263
>sp|Q86JM3|RPC6_DICDI DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium
discoideum GN=polr3f PE=3 SV=1
Length = 293
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ++ +KKVYML+++EP R +TGG Y DQ ++ +++ ++ F+ +N
Sbjct: 127 KSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFV--------DNK 178
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+A + +RK + + L EDI+ ++ T+++DG IE++ + M
Sbjct: 179 GAVDLADIITY-----LRKVAEE--ATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAM 231
Query: 151 --------YRAVSPYFAVTGLSTSPCGVCP 172
Y+ V PCG CP
Sbjct: 232 LGRRSGILYKPTKTPIPVNNFCNMPCGNCP 261
>sp|A9VPN7|ILVD_BACWK Dihydroxy-acid dehydratase OS=Bacillus weihenstephanensis (strain
KBAB4) GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|Q6HKA0|ILVD_BACHK Dihydroxy-acid dehydratase OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|Q63CV3|ILVD_BACCZ Dihydroxy-acid dehydratase OS=Bacillus cereus (strain ZK / E33L)
GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|Q81F26|ILVD_BACCR Dihydroxy-acid dehydratase OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=ilvD PE=3 SV=2
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|B9IX72|ILVD_BACCQ Dihydroxy-acid dehydratase OS=Bacillus cereus (strain Q1) GN=ilvD
PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|B7HMM7|ILVD_BACC7 Dihydroxy-acid dehydratase OS=Bacillus cereus (strain AH187)
GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|B7HIP0|ILVD_BACC4 Dihydroxy-acid dehydratase OS=Bacillus cereus (strain B4264)
GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|C1EPL6|ILVD_BACC3 Dihydroxy-acid dehydratase OS=Bacillus cereus (strain 03BB102)
GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|B7IS44|ILVD_BACC2 Dihydroxy-acid dehydratase OS=Bacillus cereus (strain G9842)
GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|Q9XBI3|ILVD_BACC1 Dihydroxy-acid dehydratase OS=Bacillus cereus (strain ATCC 10987)
GN=ilvD PE=3 SV=2
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|B7JJG8|ILVD_BACC0 Dihydroxy-acid dehydratase OS=Bacillus cereus (strain AH820)
GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|Q81S26|ILVD_BACAN Dihydroxy-acid dehydratase OS=Bacillus anthracis GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|A0RCL3|ILVD_BACAH Dihydroxy-acid dehydratase OS=Bacillus thuringiensis (strain Al
Hakam) GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|C3L6P6|ILVD_BACAC Dihydroxy-acid dehydratase OS=Bacillus anthracis (strain CDC 684 /
NRRL 3495) GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|C3P6S2|ILVD_BACAA Dihydroxy-acid dehydratase OS=Bacillus anthracis (strain A0248)
GN=ilvD PE=3 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF+ F+ + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFDKPFIAI----CNSFIEIIPGHKHLNEFGKLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|A7GNQ7|ILVD_BACCN Dihydroxy-acid dehydratase OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=ilvD PE=3 SV=1
Length = 557
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 44 FDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLAC 101
FD P RSL T +D+DF FV + C F+++ N G LV A R A
Sbjct: 10 FDKAPHRSLLKATGLKDEDFHKPFVAI----CNSFIEIIPGHKHLNEFGRLVKEAVRAAG 65
Query: 102 ATPKEVRKFITDLGIS-----------KVELSEEDIRTILETLLFDGKI 139
P E D GI+ E+ + + T++ FDG I
Sbjct: 66 MVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMI 114
>sp|Q84HF4|KYNB_PSEFL Kynurenine formamidase OS=Pseudomonas fluorescens GN=kynB PE=3
SV=1
Length = 218
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 43 LFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQC 75
LFD+ P + TW D D++ E V VL+ QC
Sbjct: 6 LFDISPPITTAIATWPGDTDYQQEPVWVLDHQC 38
>sp|Q6F6N3|DNAK_ACIAD Chaperone protein DnaK OS=Acinetobacter sp. (strain ADP1) GN=dnaK
PE=3 SV=1
Length = 647
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 31/106 (29%)
Query: 22 LTGGTWYQDQDFEASKKKVYMLFDLEPDR-----SLTGGTWYQDQDFEVEFVDVLNQQCY 76
L GGT F+ S + + DL+ D+ S G T+ +DF+ +D Y
Sbjct: 194 LGGGT------FDVS---IIEIADLDGDQQIEVLSTNGDTFLGGEDFDTALID------Y 238
Query: 77 RFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELS 122
+ K+E++ N N PL QRL A K +K+ELS
Sbjct: 239 LVEEFKKEQSVNLKNDPLALQRLKEAAEK-----------AKIELS 273
>sp|A6TH74|EPMA_KLEP7 Elongation factor P--(R)-beta-lysine ligase OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=epmA PE=3 SV=1
Length = 325
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 101 CATPKEVRKFITDLGISKVE---LSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157
A E+R+F TD G+ +VE +S+ + T + F+ + + G ++Y SP
Sbjct: 20 AAVMAEIRRFFTDRGVLEVETPCMSQATV-TDIHLFPFETRFVGPGHSQGLNLYLMTSPE 78
Query: 158 FAVTGLSTSPCG 169
+ + L + CG
Sbjct: 79 YHMKRLLAAGCG 90
>sp|B5Y345|EPMA_KLEP3 Elongation factor P--(R)-beta-lysine ligase OS=Klebsiella
pneumoniae (strain 342) GN=epmA PE=3 SV=1
Length = 325
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 101 CATPKEVRKFITDLGISKVE---LSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157
A E+R+F TD G+ +VE +S+ + T + F+ + + G ++Y SP
Sbjct: 20 AAVMAEIRRFFTDRGVLEVETPCMSQATV-TDIHLFPFETRFVGPGHSQGLNLYLMTSPE 78
Query: 158 FAVTGLSTSPCG 169
+ + L + CG
Sbjct: 79 YHMKRLLAAGCG 90
>sp|Q30PV8|PCKA_SULDN Phosphoenolpyruvate carboxykinase [ATP] OS=Sulfurimonas
denitrificans (strain ATCC 33889 / DSM 1251) GN=pckA
PE=3 SV=1
Length = 528
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 9 KVYMLFDLEPDRSLTGGTWY 28
+V++LFD+E + S+ GGTWY
Sbjct: 171 EVFVLFDIENNLSVIGGTWY 190
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 39 KVYMLFDLEPDRSLTGGTWY 58
+V++LFD+E + S+ GGTWY
Sbjct: 171 EVFVLFDIENNLSVIGGTWY 190
>sp|B0C5Q2|NUSB_ACAM1 N utilization substance protein B homolog OS=Acaryochloris marina
(strain MBIC 11017) GN=nusB PE=3 SV=1
Length = 205
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 62 DFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLV--AQRLACATPKEVRKFITDLGISKV 119
D E++ +DV + + + KTA N G + + + A + VR + DL I V
Sbjct: 65 DSELKAIDVQSSRAMVTEAIDLTKTAVNRLGLAIDFPEFIQLANQQSVRDYTLDL-IGAV 123
Query: 120 ELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVS 155
++I ILET L D ++ ++ +ID + AV+
Sbjct: 124 HHHRDEIDQILETSLVDWQLHRLAHIDANLLRLAVA 159
>sp|P48632|FPVA_PSEAE Ferripyoverdine receptor OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=fpvA PE=1
SV=2
Length = 815
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MSEIASKKKVY---MLFDLEPDRSLTGGTWYQDQDFEASK-KKVYMLFDLEPDRS 51
M K VY + FDL PD LT G YQD D + S + LFD + +R+
Sbjct: 322 MDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRN 376
>sp|P27189|TRAC4_ECOLX DNA primase TraC OS=Escherichia coli GN=traC PE=1 SV=1
Length = 1061
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 97 QRLACATPKEVR------KFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI 145
+ L TP+ R K + D KV+LSE D + E+LL DG++ ++N+
Sbjct: 945 KELPPITPENYRNHLHAEKRLADAAAGKVQLSEADTAKLKESLLNDGQLAALSNM 999
>sp|Q5GTS0|SYD_WOLTR Aspartate--tRNA ligase OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=aspS PE=3 SV=2
Length = 600
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 24/100 (24%)
Query: 76 YRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVEL------SEEDIRT- 128
YRFL L+REK NN L +Q +A E+RKF+ + G +++ S E R
Sbjct: 140 YRFLDLRREKVRNNI--VLRSQIIA-----ELRKFMIEQGFLEIQTPILTASSPEGARDY 192
Query: 129 ILETLLFDGK----------IEQINNIDGTDMYRAVSPYF 158
++ + L GK +Q+ I G D Y ++P F
Sbjct: 193 LVPSRLNPGKFYALPQAPQIFKQLLMISGFDKYFQIAPCF 232
>sp|Q00727|STCV_EMENI Putative sterigmatocystin biosynthesis dehydrogenase stcV
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=stcV PE=3 SV=2
Length = 387
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 93 PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136
P V + C T +++ IT LG VELS+E+I I +T+ FD
Sbjct: 292 PYVFPVIGCRTVEQLEANITSLG---VELSDEEIYEIEDTIPFD 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,077,014
Number of Sequences: 539616
Number of extensions: 2563818
Number of successful extensions: 6211
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6158
Number of HSP's gapped (non-prelim): 69
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)