Query psy521
Match_columns 173
No_of_seqs 127 out of 289
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:11:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dk5_A DNA-directed RNA polyme 96.9 0.00044 1.5E-08 49.3 2.6 27 25-51 64-90 (91)
2 2fu4_A Ferric uptake regulatio 94.8 0.12 4.2E-06 34.5 7.0 50 101-153 33-82 (83)
3 1xn7_A Hypothetical protein YH 94.4 0.091 3.1E-06 36.2 5.7 41 103-143 3-50 (78)
4 3mwm_A ZUR, putative metal upt 93.4 0.23 7.7E-06 37.1 6.8 67 70-155 14-80 (139)
5 2o03_A Probable zinc uptake re 93.1 0.39 1.3E-05 35.2 7.6 65 70-153 11-75 (131)
6 2k02_A Ferrous iron transport 93.0 0.17 5.8E-06 35.7 5.2 41 103-143 3-50 (87)
7 2xig_A Ferric uptake regulatio 92.5 0.52 1.8E-05 35.5 7.7 52 100-154 41-92 (150)
8 1mzb_A Ferric uptake regulatio 92.3 0.52 1.8E-05 34.7 7.3 51 101-154 34-84 (136)
9 2fe3_A Peroxide operon regulat 92.3 0.49 1.7E-05 35.3 7.3 52 100-154 36-87 (145)
10 2w57_A Ferric uptake regulatio 91.0 0.58 2E-05 35.2 6.5 51 101-154 33-83 (150)
11 3eyy_A Putative iron uptake re 90.5 0.75 2.6E-05 34.4 6.7 51 101-154 33-83 (145)
12 4ets_A Ferric uptake regulatio 89.0 0.93 3.2E-05 34.7 6.2 52 100-154 47-100 (162)
13 1ldd_A APC2WHB, anaphase promo 88.5 0.52 1.8E-05 32.4 4.0 50 100-153 21-73 (74)
14 1xmk_A Double-stranded RNA-spe 87.5 1.4 4.8E-05 30.3 5.7 59 70-155 11-70 (79)
15 2htj_A P fimbrial regulatory p 86.5 3.4 0.00012 27.2 7.2 47 101-155 14-61 (81)
16 1p6r_A Penicillinase repressor 82.8 5.1 0.00018 26.2 6.8 49 101-154 23-71 (82)
17 2dk8_A DNA-directed RNA polyme 82.8 4.5 0.00016 28.1 6.6 64 69-156 13-76 (81)
18 1qbj_A Protein (double-strande 82.0 6.5 0.00022 26.8 7.1 64 69-156 9-72 (81)
19 3t5x_A PCI domain-containing p 80.6 6.3 0.00022 31.0 7.6 75 56-144 107-182 (203)
20 2xvc_A ESCRT-III, SSO0910; cel 78.6 3 0.0001 27.5 4.1 43 98-140 6-56 (59)
21 2p5k_A Arginine repressor; DNA 77.0 10 0.00036 23.2 7.7 46 100-152 18-63 (64)
22 1qgp_A Protein (double strande 75.6 8.5 0.00029 25.7 6.0 61 70-154 14-74 (77)
23 2jt1_A PEFI protein; solution 70.8 11 0.00036 25.5 5.6 36 101-144 24-59 (77)
24 2heo_A Z-DNA binding protein 1 70.5 15 0.0005 23.6 6.1 55 71-153 11-65 (67)
25 1oyi_A Double-stranded RNA-bin 69.6 3.2 0.00011 28.9 2.7 33 102-142 31-63 (82)
26 2pmy_A RAS and EF-hand domain- 67.8 13 0.00045 24.3 5.6 55 61-136 19-73 (91)
27 1wi9_A Protein C20ORF116 homol 66.8 7.5 0.00026 26.5 4.1 50 103-152 8-64 (72)
28 1sfx_A Conserved hypothetical 66.4 25 0.00084 23.1 7.1 42 102-151 35-76 (109)
29 1h8b_A ACT-EF34, alpha-actinin 66.3 10 0.00035 25.2 4.7 29 99-137 23-52 (75)
30 2k4b_A Transcriptional regulat 64.8 6 0.0002 27.9 3.5 47 101-153 49-96 (99)
31 2kn2_A Calmodulin; S MAPK phos 64.5 18 0.00061 23.2 5.7 35 99-136 23-57 (92)
32 3nw0_A Non-structural maintena 63.3 7.5 0.00026 31.6 4.3 84 36-142 71-154 (238)
33 2igp_A Retinoblastoma-associat 63.3 32 0.0011 25.1 7.3 71 63-139 11-88 (120)
34 1avs_A Troponin C; muscle cont 63.0 24 0.00081 22.6 6.1 35 99-136 34-68 (90)
35 1b4a_A Arginine repressor; hel 62.7 33 0.0011 25.9 7.6 47 100-153 18-64 (149)
36 3d5l_A Regulatory protein RECX 62.4 22 0.00075 28.2 6.8 59 59-140 42-109 (221)
37 2y75_A HTH-type transcriptiona 60.4 12 0.00039 26.7 4.4 47 101-157 26-72 (129)
38 1ufm_A COP9 complex subunit 4; 60.3 15 0.00051 25.2 4.8 42 102-151 31-73 (84)
39 4fp5_D LT-IIB, heat-labIle ent 60.3 7 0.00024 27.5 3.0 31 31-68 28-60 (98)
40 1qb5_D Protein (heat labIle en 60.2 7.2 0.00024 27.5 3.0 40 31-77 28-70 (99)
41 2esh_A Conserved hypothetical 59.1 24 0.00083 24.8 5.9 54 102-155 27-84 (118)
42 2ovk_B RLC, myosin regulatory 59.1 19 0.00065 25.0 5.4 59 61-140 8-66 (153)
43 2opo_A Polcalcin CHE A 3; calc 58.6 20 0.00068 22.6 5.0 34 99-136 25-58 (86)
44 1wwu_A Hypothetical protein FL 56.7 8.9 0.00031 27.7 3.2 31 101-131 23-67 (99)
45 1ucr_A Protein DSVD; dissimila 56.7 11 0.00039 26.0 3.6 60 70-152 3-64 (78)
46 2dk5_A DNA-directed RNA polyme 56.6 23 0.0008 24.4 5.3 54 103-156 21-85 (91)
47 3b73_A PHIH1 repressor-like pr 55.9 11 0.00039 27.1 3.7 61 68-155 11-71 (111)
48 3cuq_B Vacuolar protein-sortin 55.9 16 0.00053 29.4 4.9 63 59-138 69-131 (218)
49 2w84_A Peroxisomal membrane pr 55.4 41 0.0014 22.7 6.1 43 70-132 16-58 (70)
50 2ktg_A Calmodulin, putative; e 53.9 27 0.00093 21.8 5.0 35 99-136 28-62 (85)
51 2lv7_A Calcium-binding protein 53.9 14 0.00048 25.3 3.8 35 99-136 50-84 (100)
52 1y0u_A Arsenical resistance op 52.7 48 0.0016 22.0 7.1 43 102-157 44-86 (96)
53 2dql_A PEX protein; circadian 50.9 45 0.0015 23.5 6.2 54 102-156 36-94 (115)
54 3u1d_A Uncharacterized protein 50.7 50 0.0017 25.1 6.8 48 100-155 44-99 (151)
55 1id3_B Histone H4; nucleosome 50.7 33 0.0011 24.3 5.4 51 61-134 44-94 (102)
56 3i5g_C Myosin catalytic light 49.8 16 0.00055 26.6 3.8 33 99-134 99-131 (159)
57 3cuo_A Uncharacterized HTH-typ 48.9 52 0.0018 21.3 6.1 45 101-155 38-83 (99)
58 1xma_A Predicted transcription 48.7 46 0.0016 24.5 6.2 54 102-155 55-112 (145)
59 2v1n_A KIN17, protein KIN homo 48.6 11 0.00038 27.7 2.6 51 61-120 21-82 (111)
60 3ri2_A Transcriptional regulat 48.6 38 0.0013 24.4 5.6 51 102-155 34-87 (123)
61 3htu_A Vacuolar protein-sortin 48.5 38 0.0013 23.2 5.2 66 69-147 8-73 (79)
62 1ku5_A HPHA, archaeal histon; 48.1 39 0.0013 21.9 5.1 48 60-130 21-68 (70)
63 3f8b_A Transcriptional regulat 48.0 69 0.0023 22.5 9.1 54 102-155 26-83 (116)
64 1okr_A MECI, methicillin resis 47.7 56 0.0019 22.2 6.2 40 101-144 24-63 (123)
65 3t5v_B Nuclear mRNA export pro 47.5 8.8 0.0003 34.2 2.3 81 56-145 323-419 (455)
66 1k9u_A Polcalcin PHL P 7; poll 47.1 17 0.00057 22.5 3.1 33 99-135 17-49 (78)
67 3ff5_A PEX14P, peroxisomal bio 46.1 56 0.0019 20.9 6.3 43 69-131 10-52 (54)
68 2mys_B Myosin; muscle protein, 45.8 62 0.0021 22.6 6.4 37 99-139 39-75 (166)
69 2joj_A Centrin protein; N-term 45.8 37 0.0013 20.6 4.6 35 99-136 21-55 (77)
70 2e8m_A Epidermal growth factor 45.8 7 0.00024 28.2 1.1 31 101-131 33-77 (99)
71 3k69_A Putative transcription 45.5 14 0.00048 28.0 2.9 47 101-157 28-74 (162)
72 3fs7_A Parvalbumin, thymic; ca 45.3 42 0.0014 22.0 5.1 37 99-135 56-92 (109)
73 2p1m_A SKP1-like protein 1A; F 44.7 25 0.00086 26.4 4.2 50 61-130 84-152 (160)
74 1c07_A Protein (epidermal grow 44.4 53 0.0018 21.7 5.5 32 99-135 24-55 (95)
75 3dtp_E RLC, myosin regulatory 44.0 20 0.00068 26.6 3.5 59 61-140 49-107 (196)
76 1j7q_A CAVP, calcium vector pr 43.6 48 0.0016 20.8 5.0 32 99-133 28-62 (86)
77 3fwb_A Cell division control p 43.4 74 0.0025 21.7 6.4 56 61-135 15-70 (161)
78 2f62_A Nucleoside 2-deoxyribos 43.1 17 0.00057 27.8 3.0 30 35-76 7-37 (161)
79 2e1n_A PEX, period extender; c 42.4 77 0.0026 23.3 6.6 55 102-157 48-107 (138)
80 1yg2_A Gene activator APHA; vi 42.4 51 0.0017 24.7 5.7 54 102-155 16-73 (179)
81 2pi2_A Replication protein A 3 42.1 5.4 0.00018 32.8 0.0 31 121-154 237-267 (270)
82 2yfw_B Histone H4, H4; cell cy 42.0 58 0.002 22.9 5.6 51 61-134 45-95 (103)
83 4esf_A PADR-like transcription 41.8 89 0.0031 22.0 7.6 52 102-155 25-80 (117)
84 2oqg_A Possible transcriptiona 41.8 76 0.0026 21.2 6.2 44 102-155 35-79 (114)
85 2p4w_A Transcriptional regulat 41.3 46 0.0016 25.9 5.4 47 102-156 29-79 (202)
86 3cuq_A Vacuolar-sorting protei 41.2 29 0.001 28.4 4.3 61 60-136 69-130 (234)
87 1tzy_D Histone H4-VI; histone- 41.2 52 0.0018 23.1 5.2 51 61-134 45-95 (103)
88 1y29_A Huwentoxin-X; A double- 41.1 6.4 0.00022 22.0 0.2 11 162-172 12-23 (28)
89 3c1d_A Protein ORAA, regulator 41.1 50 0.0017 24.6 5.4 55 68-140 4-63 (159)
90 3l7w_A Putative uncharacterize 40.4 77 0.0026 21.7 6.0 50 102-155 23-75 (108)
91 3qrx_A Centrin; calcium-bindin 40.1 44 0.0015 23.3 4.8 34 99-135 115-148 (169)
92 2kz2_A Calmodulin, CAM; TR2C, 40.1 55 0.0019 21.4 5.0 35 99-136 43-77 (94)
93 2f3n_A SH3 and multiple ankyri 39.7 20 0.00069 23.6 2.7 15 103-117 6-20 (76)
94 1exr_A Calmodulin; high resolu 39.7 51 0.0018 22.6 5.0 34 99-135 97-130 (148)
95 3v9r_A MHF1, uncharacterized p 39.5 68 0.0023 22.4 5.5 47 61-130 31-77 (90)
96 3ox6_A Calcium-binding protein 39.0 86 0.003 21.0 7.9 56 62-136 4-59 (153)
97 1rwy_A Parvalbumin alpha; EF-h 39.0 32 0.0011 22.5 3.6 37 99-135 55-91 (109)
98 1qjt_A EH1, epidermal growth f 38.8 40 0.0014 22.8 4.2 33 99-136 25-57 (99)
99 3akb_A Putative calcium bindin 38.7 52 0.0018 22.6 4.9 32 99-135 112-143 (166)
100 2zfw_A PEX; five alpha-helices 38.5 66 0.0023 24.0 5.7 55 102-157 58-117 (148)
101 1tiz_A Calmodulin-related prot 38.1 39 0.0013 19.8 3.6 34 99-135 15-48 (67)
102 3t8r_A Staphylococcus aureus C 38.1 19 0.00067 26.4 2.6 47 101-157 28-74 (143)
103 2bl0_C Myosin regulatory light 37.8 41 0.0014 22.7 4.1 33 99-134 93-125 (142)
104 1eh2_A EPS15; calcium binding, 37.5 44 0.0015 23.1 4.3 33 99-136 28-60 (106)
105 4ds7_A Calmodulin, CAM; protei 37.4 83 0.0028 21.0 5.7 33 100-135 26-58 (147)
106 1k94_A Grancalcin; penta-EF-ha 37.2 56 0.0019 22.9 4.9 32 99-133 84-115 (165)
107 1d8j_A General transcription f 37.2 72 0.0025 22.0 5.2 45 101-153 31-76 (81)
108 2qac_A Myosin A tail domain in 37.2 29 0.00099 23.8 3.3 32 99-133 98-129 (146)
109 1top_A Troponin C; contractIle 36.8 50 0.0017 22.7 4.6 35 99-136 110-144 (162)
110 2hue_C Histone H4; mini beta s 36.1 36 0.0012 23.1 3.5 50 61-133 26-75 (84)
111 3dfg_A Xcrecx, regulatory prot 36.0 68 0.0023 24.0 5.5 48 70-140 18-65 (162)
112 3bpv_A Transcriptional regulat 35.5 1E+02 0.0035 20.9 6.2 36 101-144 43-78 (138)
113 1u5t_B Defective in vacuolar p 35.2 36 0.0012 26.2 3.8 64 65-136 10-75 (169)
114 1ggw_A Protein (CDC4P); light 35.1 44 0.0015 22.6 4.0 32 99-133 90-121 (140)
115 4aan_A Cytochrome C551 peroxid 35.1 35 0.0012 29.2 4.0 41 91-133 273-313 (341)
116 2lmt_A Calmodulin-related prot 34.4 49 0.0017 23.1 4.2 35 99-136 97-131 (148)
117 1ub9_A Hypothetical protein PH 34.3 93 0.0032 20.0 6.0 46 102-155 31-78 (100)
118 4ds7_A Calmodulin, CAM; protei 34.2 47 0.0016 22.3 4.0 33 99-134 98-130 (147)
119 3iq2_A Sorting nexin-7; SNX7, 34.1 37 0.0013 24.8 3.6 53 48-116 74-126 (138)
120 3i5g_B Myosin regulatory light 33.9 38 0.0013 24.4 3.6 32 98-132 98-129 (153)
121 2ovk_B RLC, myosin regulatory 33.7 53 0.0018 22.6 4.3 33 98-133 98-130 (153)
122 1pva_A Parvalbumin; calcium bi 33.6 34 0.0012 22.4 3.1 37 99-135 56-92 (110)
123 3erp_A Putative oxidoreductase 33.5 93 0.0032 25.9 6.4 32 100-133 318-349 (353)
124 2b1u_A Calmodulin-like protein 33.4 23 0.00079 21.2 2.0 34 99-135 20-53 (71)
125 1s6j_A CDPK, calcium-dependent 33.4 46 0.0016 20.8 3.6 34 99-135 37-70 (87)
126 3k2z_A LEXA repressor; winged 33.3 73 0.0025 24.1 5.3 34 101-142 24-57 (196)
127 1wdc_B Scallop myosin; calcium 33.2 96 0.0033 21.3 5.6 51 62-131 11-61 (156)
128 3bq7_A Diacylglycerol kinase d 33.1 28 0.00094 23.2 2.5 17 102-118 10-26 (81)
129 1bu3_A Calcium-binding protein 33.0 43 0.0015 21.9 3.5 37 99-135 56-92 (109)
130 3fwb_A Cell division control p 32.4 40 0.0014 23.2 3.4 35 99-136 110-144 (161)
131 2nyx_A Probable transcriptiona 32.2 1.1E+02 0.0038 22.0 6.0 25 120-144 70-94 (168)
132 1sd4_A Penicillinase repressor 32.1 1.2E+02 0.0041 20.6 6.6 40 101-144 24-63 (126)
133 2qpq_A Protein BUG27; alpha/be 32.0 1.5E+02 0.0052 24.1 7.4 56 53-131 225-283 (301)
134 3jth_A Transcription activator 31.9 1.1E+02 0.0037 20.0 5.8 45 101-155 36-81 (98)
135 3e3v_A Regulatory protein RECX 31.9 52 0.0018 25.1 4.2 54 64-140 13-66 (177)
136 1fi6_A EH domain protein REPS1 31.9 47 0.0016 21.8 3.6 32 99-135 23-54 (92)
137 5pal_A Parvalbumin; calcium-bi 31.7 49 0.0017 21.6 3.6 37 99-135 55-91 (109)
138 2obh_A Centrin-2; DNA repair c 31.6 84 0.0029 21.5 5.1 34 99-135 93-126 (143)
139 2lhi_A Calmodulin, serine/thre 31.3 59 0.002 23.9 4.4 32 99-133 98-129 (176)
140 2hpk_A Photoprotein berovin; s 31.2 51 0.0017 24.2 4.0 32 99-135 142-173 (208)
141 3r0a_A Putative transcriptiona 31.1 91 0.0031 21.8 5.2 34 102-143 43-76 (123)
142 1ylf_A RRF2 family protein; st 31.0 43 0.0015 24.4 3.5 46 101-157 30-75 (149)
143 3lwf_A LIN1550 protein, putati 31.0 1.7E+02 0.0056 21.9 8.9 47 101-157 44-90 (159)
144 2pvb_A Protein (parvalbumin); 31.0 39 0.0013 22.1 3.0 36 99-134 55-90 (108)
145 2vn2_A DNAD, chromosome replic 31.0 1E+02 0.0035 21.9 5.5 37 100-144 50-86 (128)
146 3k0l_A Repressor protein; heli 30.8 1.2E+02 0.0041 21.5 5.9 36 101-144 60-95 (162)
147 2g9w_A Conserved hypothetical 30.8 1.1E+02 0.0039 21.5 5.7 48 101-153 24-71 (138)
148 3j04_B Myosin regulatory light 30.7 33 0.0011 23.2 2.7 31 99-132 21-51 (143)
149 2mys_C Myosin; muscle protein, 30.3 1.2E+02 0.0042 20.2 6.7 32 99-133 22-53 (149)
150 3u0k_A Rcamp; fluorescent prot 30.3 1E+02 0.0035 27.4 6.4 57 61-136 294-350 (440)
151 3ox6_A Calcium-binding protein 30.2 79 0.0027 21.2 4.6 34 99-135 102-136 (153)
152 3oop_A LIN2960 protein; protei 30.2 83 0.0028 21.7 4.8 25 120-144 62-86 (143)
153 3li6_A Calcium-binding protein 30.0 40 0.0014 19.8 2.7 35 99-136 14-48 (66)
154 3b0c_T CENP-T, centromere prot 29.9 1.2E+02 0.0041 21.6 5.7 23 60-82 22-44 (111)
155 1wlz_A DJBP, CAP-binding prote 29.9 54 0.0018 21.4 3.6 33 99-134 38-70 (105)
156 3l9f_A Putative uncharacterize 29.7 1.1E+02 0.0037 23.9 5.9 54 102-155 50-107 (204)
157 3l3f_X Protein DOA1, DOA1/UFD3 29.4 47 0.0016 28.8 3.9 34 100-133 123-156 (362)
158 3b0b_B CENP-S, centromere prot 29.3 90 0.0031 22.4 4.9 21 61-81 38-58 (107)
159 2mys_B Myosin; muscle protein, 29.2 66 0.0023 22.4 4.2 33 99-134 109-141 (166)
160 2ve7_A Kinetochore protein HEC 29.1 1.5E+02 0.0053 24.7 7.0 70 64-140 10-87 (315)
161 1u5t_A Appears to BE functiona 29.0 31 0.0011 28.2 2.6 54 61-134 89-142 (233)
162 2d58_A Allograft inflammatory 29.0 69 0.0023 21.2 4.1 35 99-136 46-80 (107)
163 2jnf_A Troponin C; stretch act 28.9 71 0.0024 21.9 4.3 34 99-135 105-138 (158)
164 3ayh_A DNA-directed RNA polyme 28.7 1.2E+02 0.0043 22.2 5.7 49 68-132 52-100 (136)
165 1gjy_A Sorcin, CP-22, V19; cal 28.7 89 0.0031 21.9 4.9 38 99-136 15-54 (167)
166 3fyr_A Sporulation inhibitor S 28.6 39 0.0013 21.2 2.4 18 60-77 20-37 (48)
167 1ku9_A Hypothetical protein MJ 28.5 91 0.0031 21.3 4.8 45 102-154 42-86 (152)
168 2kvc_A Putative uncharacterize 28.2 67 0.0023 23.1 3.9 19 116-134 69-87 (103)
169 2cfx_A HTH-type transcriptiona 28.2 1.4E+02 0.0047 21.2 5.8 49 70-143 5-53 (144)
170 4dra_A Centromere protein S; D 27.8 1.3E+02 0.0044 21.9 5.5 21 62-82 47-67 (113)
171 2vxz_A Pyrsv_GP04; viral prote 27.8 62 0.0021 25.2 3.9 43 101-153 24-66 (165)
172 2ovk_C Myosin catalytic light 27.8 41 0.0014 23.3 2.8 32 99-133 99-130 (159)
173 1w7j_B Myosin light chain 1; m 27.6 29 0.00099 23.8 1.9 33 99-134 101-133 (151)
174 3vh5_A CENP-S; histone fold, c 27.5 1.4E+02 0.0047 22.6 5.8 22 61-82 38-59 (140)
175 1exr_A Calmodulin; high resolu 27.5 1.5E+02 0.005 20.2 6.1 32 100-134 25-56 (148)
176 2rdp_A Putative transcriptiona 27.4 1.5E+02 0.0052 20.3 6.5 35 102-144 57-91 (150)
177 2dvz_A BUGE, putative exported 27.3 1.4E+02 0.0049 24.5 6.5 29 53-81 238-269 (314)
178 2w25_A Probable transcriptiona 27.3 1.4E+02 0.0049 21.1 5.8 49 70-143 7-55 (150)
179 2pex_A Transcriptional regulat 27.2 96 0.0033 21.6 4.8 25 120-144 72-96 (153)
180 2mys_C Myosin; muscle protein, 27.2 71 0.0024 21.4 3.9 31 99-132 99-129 (149)
181 1w7p_D VPS36P, YLR417W; ESCRT- 26.9 80 0.0027 29.0 5.2 65 64-136 404-470 (566)
182 3tw5_A Transglutaminase elicit 26.8 61 0.0021 28.3 4.1 54 7-60 268-324 (367)
183 3h4s_E KCBP interacting Ca2+-b 26.8 1.5E+02 0.005 20.4 5.7 36 99-136 54-89 (135)
184 2iie_A Integration HOST factor 26.7 1.3E+02 0.0045 23.5 5.9 31 100-134 45-75 (204)
185 1on2_A Transcriptional regulat 26.6 1.6E+02 0.0055 20.4 6.6 42 101-154 22-63 (142)
186 2f5x_A BUGD; periplasmic bindi 26.6 1.7E+02 0.0057 24.0 6.8 29 53-81 234-265 (312)
187 2nnn_A Probable transcriptiona 26.6 1.5E+02 0.0051 20.0 5.8 25 120-144 63-87 (140)
188 3nrs_A Dihydrofolate:folylpoly 26.4 81 0.0028 27.1 4.9 47 101-147 13-62 (437)
189 3bl5_A Queuosine biosynthesis 26.4 14 0.00049 28.0 0.1 7 166-172 193-199 (219)
190 4b4t_S RPN3, 26S proteasome re 26.4 29 0.00098 31.7 2.1 65 59-144 373-437 (523)
191 2co5_A Viral protein F93; vira 26.4 1.2E+02 0.0042 20.9 5.1 37 119-156 40-76 (99)
192 1xd7_A YWNA; structural genomi 26.4 40 0.0014 24.5 2.6 44 103-157 25-68 (145)
193 1q80_A SCP, sarcoplasmic calci 26.3 69 0.0024 22.3 3.8 32 99-135 108-139 (174)
194 3s2w_A Transcriptional regulat 26.3 1.5E+02 0.0051 20.8 5.7 35 102-144 65-99 (159)
195 1f1e_A Histone fold protein; a 26.3 1.1E+02 0.0036 23.4 5.0 56 63-141 23-78 (154)
196 1juo_A Sorcin; calcium-binding 26.2 69 0.0023 23.4 3.9 32 99-133 117-148 (198)
197 3g3z_A NMB1585, transcriptiona 25.9 1.6E+02 0.0055 20.1 6.0 35 102-144 46-80 (145)
198 2jnf_A Troponin C; stretch act 25.5 1.5E+02 0.0051 20.1 5.5 35 99-136 28-62 (158)
199 2p5v_A Transcriptional regulat 25.2 1.6E+02 0.0055 21.2 5.8 48 71-143 11-58 (162)
200 3ur8_A Glucan endo-1,3-beta-D- 25.2 45 0.0015 28.4 3.0 35 100-135 13-47 (323)
201 1s3j_A YUSO protein; structura 25.2 1.4E+02 0.0047 20.7 5.3 25 120-144 62-86 (155)
202 1wdc_C Scallop myosin; calcium 25.1 55 0.0019 22.5 3.0 32 99-133 98-129 (156)
203 2c35_A Human RPB4, DNA-directe 25.0 36 0.0012 25.8 2.2 29 102-133 116-144 (152)
204 2lky_A Uncharacterized protein 24.6 44 0.0015 24.5 2.4 32 102-135 59-90 (112)
205 2yuf_A NGFI-A-binding protein 24.4 1.8E+02 0.0062 21.9 5.9 45 54-115 1-45 (142)
206 3bro_A Transcriptional regulat 24.4 1.7E+02 0.0057 19.8 6.8 35 102-144 51-85 (141)
207 1y1x_A Leishmania major homolo 24.4 1.1E+02 0.0037 22.2 4.7 34 99-135 107-140 (191)
208 2eth_A Transcriptional regulat 24.2 1.8E+02 0.0063 20.2 6.2 25 120-144 69-93 (154)
209 2jjz_A Ionized calcium-binding 24.1 1.3E+02 0.0043 21.3 4.9 35 99-136 64-98 (150)
210 3cjn_A Transcriptional regulat 24.1 1.7E+02 0.0058 20.5 5.6 25 120-144 77-101 (162)
211 3tgn_A ADC operon repressor AD 24.0 1.2E+02 0.0042 20.7 4.8 35 102-144 52-86 (146)
212 4esb_A Transcriptional regulat 24.0 1.9E+02 0.0064 20.1 6.9 52 102-155 23-78 (115)
213 2ccm_A Calexcitin; EF hand, ca 23.9 1.1E+02 0.0038 21.7 4.7 33 99-136 123-155 (191)
214 3v4g_A Arginine repressor; vib 23.8 2.6E+02 0.0088 21.8 7.7 66 66-154 29-94 (180)
215 3sjs_A URE3-BP sequence specif 23.5 79 0.0027 23.9 3.9 35 99-137 131-165 (220)
216 1lj9_A Transcriptional regulat 23.5 1.8E+02 0.0061 19.8 5.8 25 120-144 54-78 (144)
217 1gjy_A Sorcin, CP-22, V19; cal 23.4 93 0.0032 21.8 4.1 32 99-133 86-117 (167)
218 2jq6_A EH domain-containing pr 23.3 65 0.0022 23.8 3.3 33 99-136 64-96 (139)
219 2fbh_A Transcriptional regulat 23.2 1.8E+02 0.0061 19.7 6.0 36 101-144 52-87 (146)
220 4hbl_A Transcriptional regulat 23.2 86 0.0029 22.0 3.9 36 101-144 55-90 (149)
221 1juo_A Sorcin; calcium-binding 23.2 88 0.003 22.8 4.0 37 100-136 47-85 (198)
222 3lmm_A Uncharacterized protein 23.1 17 0.0006 33.1 0.0 33 120-154 541-574 (583)
223 1uhk_A Aequorin 2, aequorin; E 23.0 71 0.0024 22.6 3.4 34 99-135 123-156 (191)
224 1nya_A Calerythrin; EF-hand, m 22.9 80 0.0027 21.9 3.6 32 99-135 116-147 (176)
225 2e8o_A SAM domain and HD domai 22.8 38 0.0013 23.6 1.8 17 102-118 30-46 (103)
226 1brv_A Protein G, BRSV-G regio 22.8 22 0.00076 20.5 0.4 11 162-172 10-20 (32)
227 3bj6_A Transcriptional regulat 22.8 1.6E+02 0.0055 20.2 5.2 25 120-144 65-89 (152)
228 3eco_A MEPR; mutlidrug efflux 22.7 1.4E+02 0.0046 20.3 4.8 35 102-144 48-82 (139)
229 3cdh_A Transcriptional regulat 22.6 1.4E+02 0.0048 20.8 4.9 37 100-144 56-92 (155)
230 1rro_A RAT oncomodulin; calciu 22.5 41 0.0014 22.0 1.8 37 99-135 55-91 (108)
231 2gxg_A 146AA long hypothetical 22.3 1.6E+02 0.0054 20.0 5.1 36 101-144 50-85 (146)
232 1y14_A B32, RPB4, DNA-directed 22.3 66 0.0023 25.5 3.2 31 100-133 150-180 (187)
233 2bl0_B Myosin regulatory light 22.1 47 0.0016 22.4 2.1 32 99-133 90-121 (145)
234 1k94_A Grancalcin; penta-EF-ha 22.0 1.2E+02 0.0041 21.1 4.4 35 100-134 14-50 (165)
235 1taf_A TFIID TBP associated fa 21.9 1.8E+02 0.006 19.1 6.2 22 61-82 17-38 (68)
236 1kmd_A VAM7P, vacuolar morphog 21.6 63 0.0021 22.6 2.8 35 48-82 58-92 (117)
237 2a61_A Transcriptional regulat 21.6 2E+02 0.0067 19.5 6.4 35 102-144 48-82 (145)
238 1dtl_A Cardiac troponin C; hel 21.6 1.9E+02 0.0067 19.5 6.9 33 100-135 34-66 (161)
239 2dbb_A Putative HTH-type trans 21.5 1.5E+02 0.0051 21.0 4.9 49 70-143 9-57 (151)
240 2zo4_A Metallo-beta-lactamase 21.3 1.7E+02 0.0059 23.0 5.7 50 101-153 265-316 (317)
241 4b4t_R RPN7, 26S proteasome re 21.2 1.6E+02 0.0055 25.0 5.8 28 120-147 358-386 (429)
242 2qww_A Transcriptional regulat 21.1 1.3E+02 0.0046 20.8 4.5 45 102-154 56-104 (154)
243 3qrx_A Centrin; calcium-bindin 20.7 2.1E+02 0.0072 19.6 6.1 33 100-135 43-75 (169)
244 2k6x_A Sigma-A, RNA polymerase 20.7 1.8E+02 0.0061 18.7 5.6 34 100-137 22-56 (72)
245 1wy9_A Allograft inflammatory 20.6 1.2E+02 0.0042 21.3 4.3 35 99-136 62-96 (147)
246 1xk4_C Calgranulin B; S100 fam 20.6 2.1E+02 0.007 19.4 6.8 37 100-136 28-68 (113)
247 3ol3_A Putative uncharacterize 20.5 2E+02 0.0069 20.7 5.3 32 102-135 66-97 (107)
248 1c75_A Cytochrome C-553; heme, 20.5 1.5E+02 0.0052 17.9 4.2 33 101-133 33-67 (71)
249 1mul_A NS2, HU-2, DNA binding 20.4 1.1E+02 0.0039 20.3 3.8 28 103-134 2-29 (90)
250 2cg4_A Regulatory protein ASNC 20.4 2E+02 0.0068 20.4 5.4 48 71-143 9-56 (152)
251 2kld_A Polycystin-2; PC2, PKD2 20.2 62 0.0021 22.6 2.5 32 100-136 61-92 (123)
252 1c7v_A CAVP, calcium vector pr 20.1 50 0.0017 20.3 1.8 35 100-136 23-57 (81)
253 1b67_A Protein (histone HMFA); 20.0 1.7E+02 0.006 18.4 5.3 23 60-82 17-39 (68)
No 1
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.90 E-value=0.00044 Score=49.33 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=22.4
Q ss_pred ceeeecccccccceeEEEeeccCCCcC
Q psy521 25 GTWYQDQDFEASKKKVYMLFDLEPDRS 51 (173)
Q Consensus 25 g~~~~d~sV~~~~rk~Yml~~l~Ps~e 51 (173)
|..+...+++.++||+||||+|+||+|
T Consensus 64 glIkr~~~~~~~~rKvy~Ly~l~Ps~e 90 (91)
T 2dk5_A 64 KLIKAVKSVAASKKKVYMLYNLSGPSS 90 (91)
T ss_dssp TSEEEECCSSCSSCCEEEESSSCCCCC
T ss_pred CCEEEecCCCCCCcEEEEEeccCcCCC
Confidence 455667888888999999999999986
No 2
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.77 E-value=0.12 Score=34.50 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~ 153 (173)
.+|++||++.+++.+ ..++..=|...|+.|+-.|.|.++...+|...|+.
T Consensus 33 ~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~ 82 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL 82 (83)
T ss_dssp SBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred CCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeec
Confidence 489999999998865 25789999999999999999999875455566764
No 3
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.38 E-value=0.091 Score=36.20 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhCCce-------eecCHHHHHHHHHHHcccCeeEEEe
Q psy521 103 TPKEVRKFITDLGISK-------VELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 103 T~~eI~~~I~~~~is~-------v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
++++|.++|++.|..+ ...|..-|+.-|+.|+-.|+|+++.
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4555555555544333 2468899999999999999999983
No 4
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=93.42 E-value=0.23 Score=37.07 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCe
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~ 149 (173)
.-|..|+++|.+. ...+|++||.+.+++.+ -.++..=|-..|+.|+-.|.|.++...+|..
T Consensus 14 ~qR~~Il~~L~~~----------------~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~ 74 (139)
T 3mwm_A 14 RQRAAVSAALQEV----------------EEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRTAEGES 74 (139)
T ss_dssp HHHHHHHHHHTTC----------------SSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEECTTSCE
T ss_pred HHHHHHHHHHHhC----------------CCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEcCCCce
Confidence 3467778888763 23589999999999865 2578999999999999999999998667777
Q ss_pred eEEeec
Q psy521 150 MYRAVS 155 (173)
Q Consensus 150 ~YR~~~ 155 (173)
.|....
T Consensus 75 ~Y~~~~ 80 (139)
T 3mwm_A 75 VYRRCS 80 (139)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 787643
No 5
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=93.14 E-value=0.39 Score=35.20 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCe
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~ 149 (173)
.-|..|+.+|.+. ...+|++||++.+++.+ -.++..=|-..|+.|+-.|.|.++...+|..
T Consensus 11 ~qR~~Il~~l~~~----------------~~~~sa~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~ 71 (131)
T 2o03_A 11 RQRAAISTLLETL----------------DDFRSAQELHDELRRRG---ENIGLTTVYRTLQSMASSGLVDTLHTDTGES 71 (131)
T ss_dssp HHHHHHHHHHHHC----------------CSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTTSEEEEECTTSCE
T ss_pred HHHHHHHHHHHhC----------------CCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCEEEEEeCCCce
Confidence 4467778888753 13589999999999865 2578899999999999999999998767777
Q ss_pred eEEe
Q psy521 150 MYRA 153 (173)
Q Consensus 150 ~YR~ 153 (173)
.|..
T Consensus 72 ~y~~ 75 (131)
T 2o03_A 72 VYRR 75 (131)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7775
No 6
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=93.04 E-value=0.17 Score=35.73 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhCCce-------eecCHHHHHHHHHHHcccCeeEEEe
Q psy521 103 TPKEVRKFITDLGISK-------VELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 103 T~~eI~~~I~~~~is~-------v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
++++|.++|++.|..+ ..+|..=|+..|+.|+-.|+|+++.
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 3 SLMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp CTHHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5566666666666444 2478899999999999999999974
No 7
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=92.47 E-value=0.52 Score=35.47 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
..+|++||++.+++.+- .++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus 41 ~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 41 THLSPEEITHSIRQKDK---NTSISSVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp SCBCHHHHHHHHHHHST---TCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred CCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 45899999999998752 46889999999999999999999866776678753
No 8
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=92.29 E-value=0.52 Score=34.73 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
.+|++||.+.+++.+ -.++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus 34 ~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 34 HMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp SBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred CCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 589999999999875 257899999999999999999998765676678763
No 9
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=92.29 E-value=0.49 Score=35.29 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
..+|++||.+.+++.+ -.++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus 36 ~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 36 AHPTADDIYKALEGKF---PNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp SCCCHHHHHHHHGGGC---TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CCCCHHHHHHHHHHhC---CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 4589999999998865 246889999999999999999999766666678753
No 10
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=91.01 E-value=0.58 Score=35.22 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
.+|++||.+.+++.+ -.++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus 33 h~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 83 (150)
T 2w57_A 33 HISAEELYKKLIDLG---EEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELS 83 (150)
T ss_dssp SEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred CCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 489999999999865 257889999999999999999999755666678763
No 11
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=90.51 E-value=0.75 Score=34.40 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
.+|++||++.+++.+- .++..=|-..|+.|+=.|.|.++...+|...|...
T Consensus 33 h~ta~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 33 HATPDDILGEVRKTAS---GINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp SBCHHHHHHHHHTTCT---TCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred CCCHHHHHHHHHhhCC---CCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 4899999999998652 46899999999999999999999766666678754
No 12
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=89.00 E-value=0.93 Score=34.66 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHh--CCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 100 ACATPKEVRKFITDL--GISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~--~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
..+|++||.+.+++. + -.+|..=|-..|+.|+=.|.|.++...+|...|...
T Consensus 47 ~h~sA~eI~~~l~~~~~~---~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 47 THYTPESLYMEIKQAEPD---LNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp SCBCHHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred CCCCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 469999999999986 4 246889999999999999999998655565568764
No 13
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=88.49 E-value=0.52 Score=32.39 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHhCCce--e-ecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521 100 ACATPKEVRKFITDLGISK--V-ELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~--v-~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~ 153 (173)
+...++.||..++=.-... . ..|.+++++.|+.||-|+++|.+. +| .||.
T Consensus 21 ~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~~--gG--~YkL 73 (74)
T 1ldd_A 21 GAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIA--NG--SYEI 73 (74)
T ss_dssp CSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCT--TT--EEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEeC--CC--EEeC
Confidence 4466999999999654322 2 258899999999999999999652 45 5886
No 14
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=87.47 E-value=1.4 Score=30.33 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHH-HHHHHHHHHcccCeeEEEecCCCC
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEE-DIRTILETLLFDGKIEQINNIDGT 148 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~-dI~~iL~~Lv~Dg~iE~~~~~~g~ 148 (173)
..++.|+.||.++ +..|+.+|++.+ .+|.. .|.+.|..|.-||.|++.. -|.
T Consensus 11 ~~~~~IL~~Lk~~-----------------g~~ta~eiA~~L--------git~~~aVr~hL~~Le~eGlV~~~~--~gR 63 (79)
T 1xmk_A 11 EIKEKICDYLFNV-----------------SDSSALNLAKNI--------GLTKARDINAVLIDMERQGDVYRQG--TTP 63 (79)
T ss_dssp HHHHHHHHHHHHT-----------------CCEEHHHHHHHH--------CGGGHHHHHHHHHHHHHTTSEEEEC--SSS
T ss_pred hHHHHHHHHHHHc-----------------CCcCHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCEEecC--CCC
Confidence 5678888888874 347888888765 36777 9999999999999999752 455
Q ss_pred eeEEeec
Q psy521 149 DMYRAVS 155 (173)
Q Consensus 149 ~~YR~~~ 155 (173)
..|+++.
T Consensus 64 P~w~LT~ 70 (79)
T 1xmk_A 64 PIWHLTD 70 (79)
T ss_dssp CEEEECH
T ss_pred CCeEeCH
Confidence 6777654
No 15
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=86.46 E-value=3.4 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEeec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRAVS 155 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~~~ 155 (173)
.+|..||++.+ | +|..-|...|+.|+-+|.|++.....|. ..|+...
T Consensus 14 ~~s~~eLa~~l---g-----vs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~ 61 (81)
T 2htj_A 14 GGKTAEIAEAL---A-----VTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKG 61 (81)
T ss_dssp CCCHHHHHHHH---T-----SCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESS
T ss_pred CCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEECh
Confidence 37899998875 3 5778899999999999999976433343 3455543
No 16
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=82.83 E-value=5.1 Score=26.23 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
.+|+.||++.+... ..++..-|..+|+.|+-.|.|++... .....|+++
T Consensus 23 ~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~~~ 71 (82)
T 1p6r_A 23 SINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYTPN 71 (82)
T ss_dssp SEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEES
T ss_pred CCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEEee
Confidence 47999999999863 24788999999999999999999863 223556654
No 17
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=82.79 E-value=4.5 Score=28.08 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC
Q psy521 69 DVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148 (173)
Q Consensus 69 ~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~ 148 (173)
..+...++.+++++ ...+|=+++..-+ -.++.++....|+.|.=.|+|+-.... |.
T Consensus 13 ~~ie~~IL~l~~~~----------------P~GItd~~L~~~~-------p~~~~~~r~~aIN~LL~~gkiel~K~~-~~ 68 (81)
T 2dk8_A 13 VEIENRIIELCHQF----------------PHGITDQVIQNEM-------PHIEAQQRAVAINRLLSMGQLDLLRSN-TG 68 (81)
T ss_dssp HHHHHHHHHHHHHC----------------SSCEEHHHHHHHC-------TTSCHHHHHHHHHHHHHHTSEEEEECS-SS
T ss_pred HHHHHHHHHHHHhC----------------CCCCCHHHHHHHC-------CCCCHHHHHHHHHHHHHcCCeEEEecC-Ce
Confidence 34445577777664 2346667755544 257899999999999999999977653 66
Q ss_pred eeEEeecC
Q psy521 149 DMYRAVSP 156 (173)
Q Consensus 149 ~~YR~~~~ 156 (173)
..||+..+
T Consensus 69 liYr~k~~ 76 (81)
T 2dk8_A 69 LLYRIKDS 76 (81)
T ss_dssp EEEEECCC
T ss_pred EEEEeccc
Confidence 89998875
No 18
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=82.03 E-value=6.5 Score=26.81 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC
Q psy521 69 DVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT 148 (173)
Q Consensus 69 ~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~ 148 (173)
+.+.+.++.+|.+... ....|+.||++-+. ++...|++.|..|.-+|+|+.+....
T Consensus 9 ~~~~~~IL~~L~~~~p--------------g~~~t~~eLA~~Lg--------vsr~tV~~~L~~Le~~G~I~~~g~~~-- 64 (81)
T 1qbj_A 9 QDQEQRILKFLEELGE--------------GKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKEAGTP-- 64 (81)
T ss_dssp HHHHHHHHHHHHHHCT--------------TCCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEESSSS--
T ss_pred hHHHHHHHHHHHHcCC--------------CCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEecCCCC--
Confidence 4556778888886410 12478999997764 56678999999999999999874211
Q ss_pred eeEEeecC
Q psy521 149 DMYRAVSP 156 (173)
Q Consensus 149 ~~YR~~~~ 156 (173)
-.|++..+
T Consensus 65 ~~W~i~~~ 72 (81)
T 1qbj_A 65 PLWKIAVS 72 (81)
T ss_dssp CEEEEC--
T ss_pred CeeEEeCc
Confidence 24665543
No 19
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=80.60 E-value=6.3 Score=31.04 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=53.1
Q ss_pred cce-ecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 56 TWY-QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 56 ~WY-tD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.|| .++-+ ..++.|+..|++-+-++.....+ .+-.+.++|..-++-+|.. .++.+|+|.||-.|+
T Consensus 107 ~~f~~~~~~--lll~rlr~~v~r~l~rkv~~~~~----------~~rI~l~~i~~~l~~~~~~--~~~~~evE~ila~lI 172 (203)
T 3t5x_A 107 AFFIRCGIF--LILEKLKIITYRNLFKKVYLLLK----------THQLSLDAFLVALKFMQVE--DVDIDEVQCILANLI 172 (203)
T ss_dssp HHHHHHTCH--HHHHTHHHHHHHHHHHHHHHHHC----------CSEEEHHHHHHHHHHTTCT--TCCHHHHHHHHHHHH
T ss_pred HHHHHCChH--HHHHHHHHHHHHHHHHHHHHhcC----------CCcccHHHHHHHHHhcCCC--CCCHHHHHHHHHHHH
Confidence 455 34444 35788888888877665432110 1236799999999876632 359999999999999
Q ss_pred ccCeeEEEec
Q psy521 135 FDGKIEQINN 144 (173)
Q Consensus 135 ~Dg~iE~~~~ 144 (173)
+||+|+-..+
T Consensus 173 ~~G~Ikg~I~ 182 (203)
T 3t5x_A 173 YMGHVKGYIS 182 (203)
T ss_dssp HHTSSCEEEE
T ss_pred HcCceEEEEc
Confidence 9999987764
No 20
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=78.57 E-value=3 Score=27.47 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=35.1
Q ss_pred cCCCCCHHHHHHHHHHhC-Cce-------eecCHHHHHHHHHHHcccCeeE
Q psy521 98 RLACATPKEVRKFITDLG-ISK-------VELSEEDIRTILETLLFDGKIE 140 (173)
Q Consensus 98 ~~~~~T~~eI~~~I~~~~-is~-------v~Ls~~dI~~iL~~Lv~Dg~iE 140 (173)
.+...|-++|.+||+++| |.. -..+.++|..+|+.|.--|.|-
T Consensus 6 ~~~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 6 HHHMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp CSCCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 356789999999999887 333 2589999999999999888774
No 21
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.98 E-value=10 Score=23.25 Aligned_cols=46 Identities=13% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEE
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR 152 (173)
+.+|++||++.+++.+. .+|..=|..-|+.| |.| ++...+|...|.
T Consensus 18 ~~~t~~el~~~l~~~~~---~vs~~Tv~R~L~~l---g~v-~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGY---KVTQATVSRDIKEL---HLV-KVPTNNGSYKYS 63 (64)
T ss_dssp CCCSHHHHHHHHHHTTC---CCCHHHHHHHHHHH---TCE-EEEETTTEEEEE
T ss_pred CCCCHHHHHHHHHHhCC---CcCHHHHHHHHHHc---CCE-EEecCCCceeee
Confidence 45899999999988762 46777788778744 677 776555655554
No 22
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=75.63 E-value=8.5 Score=25.70 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCe
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~ 149 (173)
.+.+.++.+|.+... ....|+.||++-+. ++...|+..|..|.=+|.|+.+... .-
T Consensus 14 ~~~~~IL~~L~~~~~--------------~~~~t~~eLA~~Lg--------vs~~tV~~~L~~L~~~G~I~~~g~~--~~ 69 (77)
T 1qgp_A 14 DQEQRILKFLEELGE--------------GKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKEAGT--PP 69 (77)
T ss_dssp HHHHHHHHHHHHHCS--------------SSCEEHHHHHHHHC--------CCHHHHHHHHHHHHHHTSEEEECSS--SC
T ss_pred HHHHHHHHHHHHcCC--------------CCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEecCCC--CC
Confidence 334677788887521 12478999987653 5667899999999999999987421 12
Q ss_pred eEEee
Q psy521 150 MYRAV 154 (173)
Q Consensus 150 ~YR~~ 154 (173)
.|++.
T Consensus 70 ~W~i~ 74 (77)
T 1qgp_A 70 LWKIA 74 (77)
T ss_dssp EEEEC
T ss_pred ceEec
Confidence 46654
No 23
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=70.78 E-value=11 Score=25.55 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.||+.||++.+ | +|..-|+.-|+.|+-.|.|++...
T Consensus 24 ~psv~EIa~~l---g-----vS~~TVrr~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 24 PVKTRDIADAA---G-----LSIYQVRLYLEQLHDVGVLEKVNA 59 (77)
T ss_dssp CEEHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEEESC
T ss_pred CcCHHHHHHHH---C-----CCHHHHHHHHHHHHHCCcEEecCC
Confidence 47899988765 4 355669999999999999999863
No 24
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=70.47 E-value=15 Score=23.64 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCee
Q psy521 71 LNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150 (173)
Q Consensus 71 L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~ 150 (173)
.++.++.+|.+. ....|..||++.+ .++..-|.++|++|.-+|.|+... .| .
T Consensus 11 ~~~~IL~~L~~~----------------~~~~s~~eLA~~l--------glsr~tv~~~l~~L~~~G~I~~~~--~G--~ 62 (67)
T 2heo_A 11 LEQKILQVLSDD----------------GGPVAIFQLVKKC--------QVPKKTLNQVLYRLKKEDRVSSPS--PK--Y 62 (67)
T ss_dssp HHHHHHHHHHHH----------------CSCEEHHHHHHHH--------CSCHHHHHHHHHHHHHTTSEEEEE--TT--E
T ss_pred HHHHHHHHHHHc----------------CCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEecCC--Cc--e
Confidence 456677777642 1236788877653 356889999999999999998732 35 3
Q ss_pred EEe
Q psy521 151 YRA 153 (173)
Q Consensus 151 YR~ 153 (173)
|+.
T Consensus 63 y~l 65 (67)
T 2heo_A 63 WSI 65 (67)
T ss_dssp EEE
T ss_pred Eee
Confidence 664
No 25
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=69.56 E-value=3.2 Score=28.89 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEE
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~ 142 (173)
.|+.||++- ..+|...|++.|..|+-+|.|...
T Consensus 31 ~sa~eLAk~--------LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 31 ATAAQLTRQ--------LNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp EEHHHHHHH--------SSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred CCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEeC
Confidence 455555543 347889999999999999999985
No 26
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=67.81 E-value=13 Score=24.27 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=40.5
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.+|..+.++.|+++...|=.++ .++.+.+|+...++..| ++.++++.+++.+-.|
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~----------------~G~I~~~El~~~l~~~g-----~~~~~~~~~~~~~D~d 73 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANR----------------SGRLEREEFRALCTELR-----VRPADAEAVFQRLDAD 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTC----------------SSSEEHHHHHHHHHHTT-----CCHHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCC----------------CCCCcHHHHHHHHHHcC-----cCHHHHHHHHHHhCCC
Confidence 5667777777776655443222 36799999999999987 5889999999887543
No 27
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=66.83 E-value=7.5 Score=26.51 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhCCce-------eecCHHHHHHHHHHHcccCeeEEEecCCCCeeEE
Q psy521 103 TPKEVRKFITDLGISK-------VELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152 (173)
Q Consensus 103 T~~eI~~~I~~~~is~-------v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR 152 (173)
.+.+..+||++..+.. ..|+.+|+-.=|+.|.-+|+|--+.+..|..+|-
T Consensus 8 ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyI 64 (72)
T 1wi9_A 8 FLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYI 64 (72)
T ss_dssp HHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEEC
T ss_pred HHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEe
Confidence 4566666666666554 3589999999999999999999998766875553
No 28
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=66.40 E-value=25 Score=23.06 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeE
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY 151 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~Y 151 (173)
.|..+|++.+ .++..-|..+|+.|+-.|.|++....++...|
T Consensus 35 ~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~ 76 (109)
T 1sfx_A 35 MRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREIVEKGWVGY 76 (109)
T ss_dssp BCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEEESSSEEE
T ss_pred CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEeecCCceEE
Confidence 6788888776 46888999999999999999997643444334
No 29
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=66.25 E-value=10 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc-ccC
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL-FDG 137 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv-~Dg 137 (173)
.+|+|.+++.. .||.++|+.+++.+- +||
T Consensus 23 ~G~It~~eLr~----------~lt~eevd~~i~~~d~~dg 52 (75)
T 1h8b_A 23 KPYILAEELRR----------ELPPDQAQYCIKRMPAYSG 52 (75)
T ss_dssp CSSBCHHHHHH----------HSCHHHHHHHHHHSCSCCC
T ss_pred CCCcCHHHHHh----------cCCHHHHHHHHHhcCcccC
Confidence 37899999988 499999999999987 764
No 30
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=64.83 E-value=6 Score=27.86 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEe
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRA 153 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~ 153 (173)
.+|+.||++.+... ..++..-|..+|+.|+-.|.|++.. +|. ..|++
T Consensus 49 ~~t~~eL~~~l~~~----~~~s~sTVt~~L~rLe~KGlV~R~~--~gR~~~Y~p 96 (99)
T 2k4b_A 49 EARVDEIYAQIPQE----LEWSLATVKTLLGRLVKKEMLSTEK--EGRKFVYRP 96 (99)
T ss_dssp CEEHHHHHHTCCGG----GCCCHHHHHHHHHHHHHTTSCEEEE--ETTEEEEEC
T ss_pred CCCHHHHHHHHhcc----cCCCHhhHHHHHHHHHHCCCEEEEe--CCCEEEEEE
Confidence 37888988887542 2578899999999999999999976 343 44554
No 31
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=64.53 E-value=18 Score=23.18 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.+.+|+...++..| ..++.++++.+++.+-.|
T Consensus 23 ~G~i~~~el~~~l~~~g---~~~~~~~~~~l~~~~d~~ 57 (92)
T 2kn2_A 23 NGYISASELRHVMINLG---EKLTDEEVEQMIKEADLD 57 (92)
T ss_dssp SSEECHHHHHHHHHHTT---CCCCHHHHHHHHHHHCSS
T ss_pred CCeEcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 36799999999999987 358999999999887543
No 32
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=63.34 E-value=7.5 Score=31.60 Aligned_cols=84 Identities=7% Similarity=0.205 Sum_probs=56.3
Q ss_pred cceeEEEeeccCCCcCcccccceecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhC
Q psy521 36 SKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLG 115 (173)
Q Consensus 36 ~~rk~Yml~~l~Ps~eiTGG~WYtD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~ 115 (173)
.++.+|.|.+..+++..-=++=|+..|+ +|+..|.+.+ +... .+..+..++.+-.. .
T Consensus 71 ~g~~~y~lVN~~~d~~~klaT~yt~~Ei--~~fk~lle~i---~~s~----------------~~~~s~~~~lnl~~--~ 127 (238)
T 3nw0_A 71 DGRPIYALVNLATTSISKMATDFAENEL--DLFRKALELI---IDSE----------------TGFASSTNILNLVD--Q 127 (238)
T ss_dssp TCCEEEEEEESSSCTTHHHHTTSCHHHH--HHHHHHHHHH---HHSS----------------SSCEEHHHHHGGGT--T
T ss_pred CCCEEEEEEeCCCCHHHhhccCCCHHHH--HHHHHHHHHH---HhCC----------------CCceeHHHHHHHHh--h
Confidence 5678999999998887766666777665 5555555543 3321 12344444432221 2
Q ss_pred CceeecCHHHHHHHHHHHcccCeeEEE
Q psy521 116 ISKVELSEEDIRTILETLLFDGKIEQI 142 (173)
Q Consensus 116 is~v~Ls~~dI~~iL~~Lv~Dg~iE~~ 142 (173)
+....|+..+.+++|+.||-||=+++.
T Consensus 128 ~~~k~l~~~eae~lL~~lv~~gWl~~~ 154 (238)
T 3nw0_A 128 LKGKKMRKKEAEQVLQKFVQNKWLIEK 154 (238)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334689999999999999999999873
No 33
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=63.31 E-value=32 Score=25.10 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHH---HHHHHHhCCceeecC----HHHHHHHHHHHcc
Q psy521 63 FEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEV---RKFITDLGISKVELS----EEDIRTILETLLF 135 (173)
Q Consensus 63 lD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI---~~~I~~~~is~v~Ls----~~dI~~iL~~Lv~ 135 (173)
=|.+|+....+.+..||..+.++ .++.......||..|+ .+||-+.=-.+.++. +|||-.+|+.|-|
T Consensus 11 ~Dk~~q~~~~~~i~~fL~~~~~~------~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK~L~Y 84 (120)
T 2igp_A 11 NDKAFIQQCIRQLCEFLTENGYA------HNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGY 84 (120)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCS------SCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCC------CCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCC
Confidence 38899999999999999986543 1232233355777664 455554211224443 7899999999998
Q ss_pred cCee
Q psy521 136 DGKI 139 (173)
Q Consensus 136 Dg~i 139 (173)
=..|
T Consensus 85 P~~i 88 (120)
T 2igp_A 85 PFAL 88 (120)
T ss_dssp CSCC
T ss_pred Ccee
Confidence 8764
No 34
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=63.04 E-value=24 Score=22.60 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.+.+|+...++..|. .++.++++.+++.+--|
T Consensus 34 ~G~i~~~el~~~l~~~g~---~~~~~~~~~l~~~~D~~ 68 (90)
T 1avs_A 34 GGDISTKELGTVMRMLGQ---NPTKEELDAIIEEVDED 68 (90)
T ss_dssp SSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHHCTT
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 367999999999999874 68899999999887443
No 35
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=62.67 E-value=33 Score=25.88 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~ 153 (173)
+..|.+|+.+.+++.|+ ..|..=|.+-|+.| .+.++++.+|...|..
T Consensus 18 ~~~tq~eL~~~L~~~G~---~VtqaTisRDL~eL----~~vKv~~~~g~~~Y~l 64 (149)
T 1b4a_A 18 DIETQDELVDRLREAGF---NVTQATVSRDIKEM----QLVKVPMANGRYKYSL 64 (149)
T ss_dssp CCCSHHHHHHHHHHTTC---CCCHHHHHHHHHHT----TCEEEECSSSCEEEEC
T ss_pred CCccHHHHHHHHHHcCC---CcCHHHHHHHHHHc----CCeEEECCCCCEEEEe
Confidence 56899999999999997 46888888888888 4567776678755554
No 36
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=62.40 E-value=22 Score=28.21 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=45.5
Q ss_pred ecccccHHHHHHHH---------HHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHH
Q psy521 59 QDQDFEVEFVDVLN---------QQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTI 129 (173)
Q Consensus 59 tD~elD~eFI~~L~---------~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~i 129 (173)
.+.++|.+.++.|. ..+++||..+ --|..|+.+.|.+.| ++.+.|+.+
T Consensus 42 kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r------------------~~S~~EL~~KL~~kg-----~~~e~i~~v 98 (221)
T 3d5l_A 42 KGTELDEKQIAAIATADQQAKAYSRMLDYLSYQ------------------MRTESDIVKKLKEID-----TPEEFVEPI 98 (221)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------CCCHHHHHHHHHHTT-----CCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHHHhccc------------------cccHHHHHHHHHhcC-----CCHHHHHHH
Confidence 35778877776654 4566666654 248999999999987 478999999
Q ss_pred HHHHcccCeeE
Q psy521 130 LETLLFDGKIE 140 (173)
Q Consensus 130 L~~Lv~Dg~iE 140 (173)
|+-|.-.|.|-
T Consensus 99 l~~L~~~g~ld 109 (221)
T 3d5l_A 99 LKKLRGQQLID 109 (221)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999888873
No 37
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=60.42 E-value=12 Score=26.65 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCC
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~ 157 (173)
.+|.++|++.+ .++..-++++|..|.-.|.|+..+..+| .|+..+.+
T Consensus 26 ~~s~~ela~~~--------~i~~~~v~~il~~L~~~Glv~~~~g~~g--gy~L~~~~ 72 (129)
T 2y75_A 26 PTSLKSIAQTN--------NLSEHYLEQLVSPLRNAGLVKSIRGAYG--GYVLGSEP 72 (129)
T ss_dssp CBCHHHHHHHT--------TSCHHHHHHHHHHHHHTTSEEEC----C--CEEESSCG
T ss_pred cCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEecCCCCC--ceEeCCCH
Confidence 47889988754 4688899999999999999998753334 48887654
No 38
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=60.30 E-value=15 Score=25.16 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec-CCCCeeE
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN-IDGTDMY 151 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~-~~g~~~Y 151 (173)
.+++.+++-+ .|+.++++++|-.|+.|++|....+ .+|...|
T Consensus 31 Isl~~La~ll--------~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f 73 (84)
T 1ufm_A 31 ITFEELGALL--------EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 73 (84)
T ss_dssp EEHHHHHHHT--------TSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEE
T ss_pred eeHHHHHHHH--------CcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEe
Confidence 6788877664 4789999999999999999986543 4564434
No 39
>4fp5_D LT-IIB, heat-labIle enterotoxin IIB, B chain; B pentamer LT-IIB S74A mutant; 1.40A {Escherichia coli} PDB: 1qb5_D 1qcb_D 1tii_D 4fnf_D 4fo2_D
Probab=60.30 E-value=7 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.588 Sum_probs=20.7
Q ss_pred ccccccceeEEEeeccCCCcCcccccceec--ccccHHHH
Q psy521 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQD--QDFEVEFV 68 (173)
Q Consensus 31 ~sV~~~~rk~Yml~~l~Ps~eiTGG~WYtD--~elD~eFI 68 (173)
..++..+|-+|...+ |||.||-. .++-..|.
T Consensus 28 ~din~nt~g~yvvs~-------tggvw~i~~~~dypdn~~ 60 (98)
T 4fp5_D 28 SDINNNTDGMYVVSS-------TGGVWRISRAKDYPDNVM 60 (98)
T ss_dssp EECSTTTCEEEEEET-------TCCEEEECCCSSTTHHHH
T ss_pred hhccCCCccEEEEec-------CCcEEEecCCCCCChhhh
Confidence 456777888998754 89999943 34444443
No 40
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=60.15 E-value=7.2 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=24.3
Q ss_pred ccccccceeEEEeeccCCCcCcccccceec--ccccHHHH-HHHHHHHHH
Q psy521 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQD--QDFEVEFV-DVLNQQCYR 77 (173)
Q Consensus 31 ~sV~~~~rk~Yml~~l~Ps~eiTGG~WYtD--~elD~eFI-~~L~~~~~~ 77 (173)
..++..+|-+|...+ |||.||-. .++-..|. ..++.....
T Consensus 28 ~din~nt~g~yvvs~-------tggvw~i~~~~dypdn~~s~e~rk~ama 70 (99)
T 1qb5_D 28 SDINNNTDGMYVVSS-------TGGVWRISRAKDYPDNVMTAEMRKIAMA 70 (99)
T ss_dssp EECSTTTCEEEEEET-------TSCEEEECCCSSTTHHHHHHHHHHHHHH
T ss_pred hhccCCCccEEEEec-------CCcEEEecCCCCCChhhhhHHHHHHHHH
Confidence 456777888998754 89999953 34444443 234444333
No 41
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=59.10 E-value=24 Score=24.80 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHhCCceeecCH-HHHHHHHHHHcccCeeEEEecC-CC--CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSE-EDIRTILETLLFDGKIEQINNI-DG--TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~-~dI~~iL~~Lv~Dg~iE~~~~~-~g--~~~YR~~~ 155 (173)
.+.-+|.+.|.+.|.....++. ..|-.+|+.|+-+|.|+..... +| ...|+.+.
T Consensus 27 ~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 5789999999885543334778 8899999999999999987642 33 35687764
No 42
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=59.07 E-value=19 Score=24.99 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeE
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE 140 (173)
..|..+-+..|+++-..|=.+ ..+..|.+|+...++..|. .++.++++.+++.. ||.|.
T Consensus 8 ~~l~~~~~~~l~~~F~~~D~d----------------~~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~--~g~i~ 66 (153)
T 2ovk_B 8 VKLSQRQMQELKEAFTMIDQD----------------RDGFIGMEDLKDMFSSLGR---VPPDDELNAMLKEC--PGQLN 66 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCS----------------TTTCCCHHHHHHHTTTTTS---CCCHHHHHHHHHHS--SSCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------------CCCeECHHHHHHHHHHhCC---CCCHHHHHHHHHHc--CCCCC
Confidence 345566667666654433222 1367999999999998875 68999999999987 77664
No 43
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=58.57 E-value=20 Score=22.63 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+...++..| .++.++++.+++.+=-|
T Consensus 25 ~G~i~~~el~~~l~~~g----~~~~~~~~~~~~~~D~~ 58 (86)
T 2opo_A 25 DGKISSSELGDALKTLG----SVTPDEVRRMMAEIDTD 58 (86)
T ss_dssp SSEEEHHHHHHHHHTTT----TCCHHHHHHHHHHHCTT
T ss_pred CCCcCHHHHHHHHHHcC----CCCHHHHHHHHHHhCCC
Confidence 36799999999999877 57999999999887443
No 44
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=56.73 E-value=8.9 Score=27.65 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHhCCcee--------------ecCHHHHHHHHH
Q psy521 101 CATPKEVRKFITDLGISKV--------------ELSEEDIRTILE 131 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v--------------~Ls~~dI~~iL~ 131 (173)
..|++||.+|+...|.++. .|+.+|+++|+-
T Consensus 23 ~Ssp~EV~~WL~~kgFS~~tv~~Lg~ltGaqLf~Ltk~eL~~vCg 67 (99)
T 1wwu_A 23 ESGPDEVRAWLEAKAFSPRIVENLGILTGPQLFSLNKEELKKVCG 67 (99)
T ss_dssp TCCHHHHHHHHHHHTCCTTHHHHTTSSCHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHcCCHHHHHHHCc
Confidence 4789999999999998874 488899988874
No 45
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=56.70 E-value=11 Score=25.99 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCcee-ecCHHHHHHHHHHHcccCeeEEEecCCC-
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKV-ELSEEDIRTILETLLFDGKIEQINNIDG- 147 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v-~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g- 147 (173)
.+++.|+.||+.++.+..+ -=..++.+- + +....+|..+++.||-+|++|=-. .|
T Consensus 3 e~K~~Ile~l~~k~~~Ksk-------------fYf~D~~k~--------~P~~k~r~vKK~~~~LV~Eg~leywS--SGS 59 (78)
T 1ucr_A 3 EAKQKVVDFLNSKSGSKSK-------------FYFNDFTDL--------FPDMKQREVKKILTALVNDEVLEYWS--SGS 59 (78)
T ss_dssp HHHHHHHHHHSSHHHHSSC-------------EEHHHHHHH--------CTTSCHHHHHHHHHHHHHTTSEEEEE--ETT
T ss_pred HHHHHHHHHHHhccccccc-------------chHHHHHHH--------ccccCHHHHHHHHHHHHhcCceEEEe--cCC
Confidence 5788899999987543111 113444441 2 467899999999999999999875 35
Q ss_pred CeeEE
Q psy521 148 TDMYR 152 (173)
Q Consensus 148 ~~~YR 152 (173)
+..|-
T Consensus 60 TTmyg 64 (78)
T 1ucr_A 60 TTMYG 64 (78)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 34443
No 46
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=56.57 E-value=23 Score=24.39 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhC---Cce------eecCHHHHHHHHHHHcccCeeEEEec--CCCCeeEEeecC
Q psy521 103 TPKEVRKFITDLG---ISK------VELSEEDIRTILETLLFDGKIEQINN--IDGTDMYRAVSP 156 (173)
Q Consensus 103 T~~eI~~~I~~~~---is~------v~Ls~~dI~~iL~~Lv~Dg~iE~~~~--~~g~~~YR~~~~ 156 (173)
.-..|++.|.++| |+. ..|+...|-.+|+.|+=-|.|.++.+ .++...|.+...
T Consensus 21 ~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~Ly~l 85 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNL 85 (91)
T ss_dssp SHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEESSS
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEEecc
Confidence 3455777777543 443 45889999999999999999998875 345677877543
No 47
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=55.86 E-value=11 Score=27.08 Aligned_cols=61 Identities=13% Similarity=0.321 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCC
Q psy521 68 VDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147 (173)
Q Consensus 68 I~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g 147 (173)
.+.....|+..|++. +-.|+.+|++.+ .+.+|..-|.+-|+.|+-.|.|+... .|
T Consensus 11 md~~d~~IL~~L~~~-----------------g~~s~~eLA~~l------~~giS~~aVs~rL~~Le~~GLV~~~~--rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHEE-----------------GNGSPKELEDRD------EIRISKSSVSRRLKKLADHDLLQPLA--NG 65 (111)
T ss_dssp CCHHHHHHHHHHHHH-----------------SCBCHHHHHTST------TCCSCHHHHHHHHHHHHHTTSEEECS--TT
T ss_pred cCHHHHHHHHHHHHc-----------------CCCCHHHHHHHH------hcCCCHHHHHHHHHHHHHCCCEEecC--Cc
Confidence 444556777777653 236788887632 23679999999999999999999852 34
Q ss_pred CeeEEeec
Q psy521 148 TDMYRAVS 155 (173)
Q Consensus 148 ~~~YR~~~ 155 (173)
.|+++.
T Consensus 66 --~Y~LT~ 71 (111)
T 3b73_A 66 --VYVITE 71 (111)
T ss_dssp --CEEECH
T ss_pred --eEEECc
Confidence 788874
No 48
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=55.86 E-value=16 Score=29.40 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=45.2
Q ss_pred ecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCe
Q psy521 59 QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGK 138 (173)
Q Consensus 59 tD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~ 138 (173)
+.++|-.|+--+|.++|...+... .+..++.|+...+++..-. -.+|.+|+.+-++.|.==|.
T Consensus 69 s~~~f~~ELa~qi~e~c~~~~~~~----------------GG~I~L~dl~~~~nraRG~-~lVSp~Dl~~A~~~l~~Lg~ 131 (218)
T 3cuq_B 69 SGTQYHMQLAKQLAGILQVPLEER----------------GGIMSLTEVYCLVNRARGM-ELLSPEDLVNACKMLEALKL 131 (218)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHT----------------TSEEEHHHHHHHHHHTCSS-SCCCHHHHHHHHHTTTTTTC
T ss_pred cccHHHHHHHHHHHHHHHHHHHhC----------------CCeEEHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCC
Confidence 566666666666666666654432 3679999999999876532 45899999999998875443
No 49
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=55.40 E-value=41 Score=22.67 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHH
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILET 132 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~ 132 (173)
.|.+...+||++-+- .....++=.+||.+.| ||.+||+..|+.
T Consensus 16 ~li~~Av~FLqdp~V---------------~~sp~~~K~~FL~sKG-----Lt~eEI~~Al~r 58 (70)
T 2w84_A 16 PLIATAVKFLQNSRV---------------RQSPLATRRAFLKKKG-----LTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHHHHCSTTG---------------GGSCHHHHHHHHHHTT-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhh---------------hhCCHHHHHHHHHHcC-----CCHHHHHHHHHH
Confidence 344455669987321 1245888889999988 889999998875
No 50
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=53.88 E-value=27 Score=21.82 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.+.+|+...++..|. .++.++++.+++.+--|
T Consensus 28 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~d~~ 62 (85)
T 2ktg_A 28 DNKLTAEELGTVMRALGA---NPTKQKISEIVKDYDKD 62 (85)
T ss_dssp CSEEEHHHHHHHHHTTSS---CCCHHHHHHHHHHHSSS
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 367999999999998873 68999999999887543
No 51
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=53.88 E-value=14 Score=25.30 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+.+.++..|+ .++.++|+++++.+=-|
T Consensus 50 ~G~I~~~El~~~l~~lg~---~~~~~ei~~l~~~~D~d 84 (100)
T 2lv7_A 50 NGFISKQELGTAMRSLGY---MPNEVELEVIIQRLDMD 84 (100)
T ss_dssp SSCBCHHHHHHHHHHHTC---CCCTTTHHHHHHHHCSS
T ss_pred CCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHCCC
Confidence 478999999999999984 58999999999876443
No 52
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=52.73 E-value=48 Score=21.99 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCC
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~ 157 (173)
.|+.||++.+ .+|..-|...|+.|+-.|.|++.. | .|++....
T Consensus 44 ~~~~eLa~~l--------~is~~tv~~~L~~L~~~Glv~~~~---g--~y~l~~~g 86 (96)
T 1y0u_A 44 RSEEEIMQTL--------SLSKKQLDYHLKVLEAGFCIERVG---E--RWVVTDAG 86 (96)
T ss_dssp CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEET---T--EEEECTTT
T ss_pred CCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEC---C--EEEECCCc
Confidence 5777777665 467888999999999999999864 4 68876543
No 53
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=50.89 E-value=45 Score=23.53 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecC---CC--CeeEEeecC
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI---DG--TDMYRAVSP 156 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~---~g--~~~YR~~~~ 156 (173)
..--+|.+.|.+.. -...++..-|-.+|+.|+-+|.|+..... +| ...|+.+..
T Consensus 36 ~~Gyei~~~l~~~~-~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~ 94 (115)
T 2dql_A 36 SYGTELIQQLETEH-PTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPE 94 (115)
T ss_dssp BCHHHHHHHHHHHC-TTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGG
T ss_pred CCHHHHHHHHHHHc-CCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHH
Confidence 56788999998754 35689999999999999999999987532 23 267888764
No 54
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=50.74 E-value=50 Score=25.12 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHhCCceee-cCHHHHHHHHHHHcccCeeEEEecCC-----C--CeeEEeec
Q psy521 100 ACATPKEVRKFITDLGISKVE-LSEEDIRTILETLLFDGKIEQINNID-----G--TDMYRAVS 155 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~-Ls~~dI~~iL~~Lv~Dg~iE~~~~~~-----g--~~~YR~~~ 155 (173)
+.+|+++|.+- .. ||..=|.+-|+.|+-.|.|+++...+ | ...|+++.
T Consensus 44 ~~~ta~eL~~~--------l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 44 GVLSVEELLYR--------NPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp SCBCHHHHHHH--------CTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred CCCCHHHHHHh--------cCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 35899998753 24 89999999999999999999886432 2 15677763
No 55
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=50.73 E-value=33 Score=24.29 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
..+..+..+.|++.+..|+.+- ++|-..|-+..+ +.+++.+||...|+.+.
T Consensus 44 ~rIS~da~~~l~~~le~fi~~I---------------------~~dA~~~a~Hak--RKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 44 KRISGLIYEEVRAVLKSFLESV---------------------IRDSVTYTEHAK--RKTVTSLDVVYALKRQG 94 (102)
T ss_dssp CEECTTHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHTT--CSEECHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHcC--CCcCcHHHHHHHHHHcC
Confidence 5677788999999999999873 566677777666 45788999999888874
No 56
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=49.85 E-value=16 Score=26.65 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.++.|.+|+.+.++..|. .||.++++.+++.+-
T Consensus 99 ~G~I~~~el~~~l~~~g~---~ls~~e~~~l~~~~D 131 (159)
T 3i5g_C 99 QGLISSAEIRNVLKMLGE---RITEDQCNDIFTFCD 131 (159)
T ss_dssp SSEECHHHHHHHHHHSSS---CCCHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhC
Confidence 578999999999999883 699999999998763
No 57
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=48.93 E-value=52 Score=21.33 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEeec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRAVS 155 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~~~ 155 (173)
..|..||++.+ | ++..-|...|+.|+-.|.|++.. +|. ..|+.+.
T Consensus 38 ~~s~~ela~~l---~-----is~~tvs~~l~~L~~~glv~~~~--~~r~~~y~l~~ 83 (99)
T 3cuo_A 38 GTSAGELTRIT---G-----LSASATSQHLARMRDEGLIDSQR--DAQRILYSIKN 83 (99)
T ss_dssp SEEHHHHHHHH---C-----CCHHHHHHHHHHHHHTTSEEEEE--CSSCEEEEECC
T ss_pred CcCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEEEEe--cCCEEEEEECh
Confidence 46788888765 3 57888999999999999999876 343 5566654
No 58
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=48.74 E-value=46 Score=24.54 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecC--CC--CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI--DG--TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~--~g--~~~YR~~~ 155 (173)
.+.-||.+.|.+...-...++..-|-.+|+.|+-+|.|++.... +| ...|+++.
T Consensus 55 ~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 55 SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred CCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 57889999998654334568999999999999999999987532 23 35677764
No 59
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=48.65 E-value=11 Score=27.72 Aligned_cols=51 Identities=16% Similarity=0.420 Sum_probs=35.2
Q ss_pred ccccHHHHHHHHHHH-----------HHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceee
Q psy521 61 QDFEVEFVDVLNQQC-----------YRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVE 120 (173)
Q Consensus 61 ~elD~eFI~~L~~~~-----------~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~ 120 (173)
.+|..+|++.|+..- ..||.+|. -.........|+.+..+||-+.|+.+|+
T Consensus 21 ~eF~~~Fl~lLr~~~g~krV~aN~vYnEyI~dk~---------HiHMNaT~W~tLT~Fvk~Lgr~G~c~V~ 82 (111)
T 2v1n_A 21 EEFRNDFLELLRRRFGTKRVHNNIVYNEYISHRE---------HIHMNATQWETLTDFTKWLGREGLCKVD 82 (111)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEHHHHHHHHTTSSC---------CCCGGGSSCSSHHHHHHHHTTTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEeehhHHHHHHhcccc---------cccccccccccHHHHHHHhccCCeEEEe
Confidence 689999999888642 12333321 0111224689999999999999999986
No 60
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=48.59 E-value=38 Score=24.43 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec-CCC--CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN-IDG--TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~-~~g--~~~YR~~~ 155 (173)
.+--+|.+.|.+.+ ..++..-|-.+|+.|+-+|.|+.... .+| ...|+.+.
T Consensus 34 ~~GYei~~~l~~~~---~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~ 87 (123)
T 3ri2_A 34 AYGYALVKSLADHG---IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTD 87 (123)
T ss_dssp EEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECH
T ss_pred CCHHHHHHHHHHhC---CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECH
Confidence 45678999999876 78999999999999999999998742 222 35688764
No 61
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=48.47 E-value=38 Score=23.21 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCC
Q psy521 69 DVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147 (173)
Q Consensus 69 ~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g 147 (173)
+.....+++|+.+.-. ..+..|+-||++--...+-.=-.|..+=+...|++|+-.||.+-+...++
T Consensus 8 eeWa~~Iy~Wv~~~G~-------------~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~~~~ 73 (79)
T 3htu_A 8 EEWGKLIYQWVSRSGQ-------------NNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITVSDG 73 (79)
T ss_dssp HHHHHHHHHHHHTTCC-------------SCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECCTTS
T ss_pred HHHHHHHHHHHHHcCC-------------CCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 4556777888876321 12467888887642222211124788888999999999999999875443
No 62
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=48.08 E-value=39 Score=21.90 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=34.9
Q ss_pred cccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHH
Q psy521 60 DQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTIL 130 (173)
Q Consensus 60 D~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL 130 (173)
...+..+.++.|++.+..|+..- .++-..|=...| +.+++.+||+--+
T Consensus 21 ~~ris~~a~~~l~e~~~~~~~~v---------------------~~dA~~~a~hak--RkTI~~~DV~lA~ 68 (70)
T 1ku5_A 21 AERVSEQAAKVLAEYLEEYAIEI---------------------AKKAVEFARHAG--RKTVKVEDIKLAI 68 (70)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHTTT--CSEECHHHHHHHH
T ss_pred cceeCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHcC--CCcCCHHHHHHHH
Confidence 57899999999999999999973 344444444444 4567778876554
No 63
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=48.02 E-value=69 Score=22.46 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec--CCC--CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN--IDG--TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~--~~g--~~~YR~~~ 155 (173)
.+--+|.+.|.+..--...++..-|-.+|+.|+-+|.|+.... .+| ...|+.+.
T Consensus 26 ~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~ 83 (116)
T 3f8b_A 26 NYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTE 83 (116)
T ss_dssp BCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECH
T ss_pred CCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECH
Confidence 4678999999886655568999999999999999999998752 233 35688764
No 64
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=47.70 E-value=56 Score=22.21 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.+|..+|++.+... ..++..-|-.+|+.|+-.|.|++...
T Consensus 24 ~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 24 YASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp SEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 47999999998753 24788999999999999999999864
No 65
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=47.51 E-value=8.8 Score=34.23 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=54.2
Q ss_pred cceecccccHHHHHHHHHHHHHHHhhhh---hhccCCCCCCcccccCCCCCHHHHHHHHHHhCCc-------------ee
Q psy521 56 TWYQDQDFEVEFVDVLNQQCYRFLQLKR---EKTANNTNGPLVAQRLACATPKEVRKFITDLGIS-------------KV 119 (173)
Q Consensus 56 ~WYtD~elD~eFI~~L~~~~~~~l~~k~---~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is-------------~v 119 (173)
.||-...+---+++.|+..|++-+-+|. .... ...+-.+.++|+.-++-++.. +.
T Consensus 323 ~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~---------~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~ 393 (455)
T 3t5v_B 323 RHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTE---------WGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNG 393 (455)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTT---------TCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCeeeHHHHHHHHhhccCcccccccccccccccc
Confidence 3554444444677888888888777765 2211 111336788888888744221 12
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEecC
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINNI 145 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~~ 145 (173)
..+.+|+|.||-.|++||.|+-..+.
T Consensus 394 ~~~~devEcIlA~LI~~G~IkGyIsh 419 (455)
T 3t5v_B 394 IHSPKNVENVLVTLINLGLLRANCFP 419 (455)
T ss_dssp SCCSSCHHHHHHHHHHHTSCCEEEET
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 47899999999999999999977643
No 66
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=47.12 E-value=17 Score=22.55 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+...++..| .++.++++.+++.+=-
T Consensus 17 ~G~i~~~el~~~l~~~g----~~~~~~~~~~~~~~D~ 49 (78)
T 1k9u_A 17 DGKISLSELTDALRTLG----STSADEVQRMMAEIDT 49 (78)
T ss_dssp SSEECHHHHHHHHHHHH----TCCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHhC----CCCHHHHHHHHHHhCC
Confidence 36799999999999977 6899999999988743
No 67
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=46.13 E-value=56 Score=20.87 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHH
Q psy521 69 DVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILE 131 (173)
Q Consensus 69 ~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~ 131 (173)
+.|.+...+||++-.- ..++.+.=.+||.+.| ||.+||+..|+
T Consensus 10 e~li~~Av~FL~dp~V---------------~~sp~~~K~~FL~sKG-----Lt~~EI~~Al~ 52 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRV---------------RQSPLATRRAFLKKKG-----LTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHHHHHCTTG---------------GGSCHHHHHHHHHHTT-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhh---------------hcCCHHHHHHHHHHcC-----CCHHHHHHHHH
Confidence 4556666779997321 1256888899999988 88999998875
No 68
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=45.81 E-value=62 Score=22.57 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCee
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKI 139 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~i 139 (173)
.+..|.+|+..+++..|.. .++.++++.+++.. ||.|
T Consensus 39 ~G~i~~~el~~~l~~~g~~--~~~~~~~~~l~~~~--dg~i 75 (166)
T 2mys_B 39 DGIIDKDDLRETFAAMGRL--NVKNEELDAMIKEA--SGPI 75 (166)
T ss_pred CCcCCHHHHHHHHHHhCCC--CCCHHHHHHHHHHC--CCCc
Confidence 3678999999999987742 56778888877752 5554
No 69
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=45.78 E-value=37 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.+.+|+...++..|. .++.++++.+++.+-.|
T Consensus 21 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~d~~ 55 (77)
T 2joj_A 21 TGSIDYHELKVAMRALGF---DVKKPEILELMNEYDRE 55 (77)
T ss_dssp SSEEEHHHHHHHHHHHTC---CCHHHHHHHHHHHHCCS
T ss_pred CCCCcHHHHHHHHHHhCC---CCCHHHHHHHHHHHCCC
Confidence 367999999999999873 57899999999887543
No 70
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.75 E-value=7 Score=28.23 Aligned_cols=31 Identities=26% Similarity=0.613 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHhCCcee--------------ecCHHHHHHHHH
Q psy521 101 CATPKEVRKFITDLGISKV--------------ELSEEDIRTILE 131 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v--------------~Ls~~dI~~iL~ 131 (173)
..|++||.+|+...|.++. .|+.+|+++|+-
T Consensus 33 ~Ssp~EV~~WL~~kgFS~~tv~~Lg~ltGaqLl~Ltk~eL~~vCg 77 (99)
T 2e8m_A 33 DSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCP 77 (99)
T ss_dssp TCCTTHHHHHHHHHTCCHHHHHHTSSSCHHHHHHCCHHHHHHHCT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHcCCHHHHHHHCC
Confidence 4789999999999998873 478888887763
No 71
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=45.52 E-value=14 Score=27.95 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCC
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~ 157 (173)
.+|.++|++.+ + ++...+++|+..|.-.|.|+.++...| .|++.+.+
T Consensus 28 ~~s~~~IA~~~---~-----is~~~l~kil~~L~~aGlv~s~rG~~G--Gy~Lar~p 74 (162)
T 3k69_A 28 KVASRELAQSL---H-----LNPVMIRNILSVLHKHGYLTGTVGKNG--GYQLDLAL 74 (162)
T ss_dssp CBCHHHHHHHH---T-----SCGGGTHHHHHHHHHTTSSEEECSTTC--EEECCSCG
T ss_pred CcCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEEeecCCCC--CeEecCCh
Confidence 47999998764 3 456678999999999999998875555 49887654
No 72
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=45.34 E-value=42 Score=21.97 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.+.+|+...++..+.....++.++++.+++.+=-
T Consensus 56 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~ 92 (109)
T 3fs7_A 56 SGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDT 92 (109)
T ss_dssp SSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCT
T ss_pred CCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCC
Confidence 4789999999999987433467899999999987743
No 73
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=44.68 E-value=25 Score=26.38 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=27.4
Q ss_pred ccccHHHHH-------------------HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeec
Q psy521 61 QDFEVEFVD-------------------VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVEL 121 (173)
Q Consensus 61 ~elD~eFI~-------------------~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~L 121 (173)
.+||.+|++ .|...|.++|.+.- ..-|++||.+.. ||.+ ++
T Consensus 84 ~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~i----------------kgkt~eeir~~f---~I~n-d~ 143 (160)
T 2p1m_A 84 KAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMI----------------KGKTPEEIRTTF---NIKN-DF 143 (160)
T ss_dssp -----------------CHHHHHHTTCHHHHHHHHHHHHHTT----------------TTCCHHHHHHHT---TCCC-CC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------------cCCCHHHHHHHc---CCCC-CC
Confidence 578888876 56777777777642 235899988765 4433 78
Q ss_pred CHHHHHHHH
Q psy521 122 SEEDIRTIL 130 (173)
Q Consensus 122 s~~dI~~iL 130 (173)
|.++=++|-
T Consensus 144 t~eEe~~ir 152 (160)
T 2p1m_A 144 TPEEEEEVR 152 (160)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888877764
No 74
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=44.42 E-value=53 Score=21.70 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+...+++.| ++.+++++|++.+=-
T Consensus 24 dG~I~~~el~~~l~~~g-----~~~~~~~~i~~~~D~ 55 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTG-----LPSTLLAHIWSLCDT 55 (95)
T ss_dssp SSEECHHHHHHHHHTTT-----CCHHHHHHHHHHHCT
T ss_pred CCcEeHHHHHHHHHHcC-----CCHHHHHHHHHHHCC
Confidence 37799999999999876 578999999987643
No 75
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=43.96 E-value=20 Score=26.61 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=40.9
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeE
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE 140 (173)
..|..+-+..|+++...|=.+ ..+..|.+|+..+++..| ..++.++++.++..+ ||.|.
T Consensus 49 ~~ls~~~~~~l~~~F~~~D~d----------------~~G~i~~~el~~~l~~lg---~~~~~~~~~~l~~~~--~g~i~ 107 (196)
T 3dtp_E 49 AMFTQHQVQEFKEAFQLIDQD----------------KDGFISKNDIRATFDSLG---RLCTEQELDSMVAEA--PGPIN 107 (196)
T ss_dssp CSSCTTTHHHHHHHHHHHCCS----------------CSSBCCHHHHHHHHHTTS---CCCCHHHHHHHHTTS--SSCCB
T ss_pred hhCCHHHHHHHHHHHHHHCCC----------------CCCcCCHHHHHHHHHHhC---CCCCHHHHHHHHHHc--cCCCc
Confidence 345555566676655444222 136799999999999987 458899999988876 66653
No 76
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=43.58 E-value=48 Score=20.78 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHH---HHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEED---IRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~d---I~~iL~~L 133 (173)
.++.+.+|+...++..|. .++.++ ++.+++.+
T Consensus 28 ~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~~~~ 62 (86)
T 1j7q_A 28 ENIAPVSDTMDMLTKLGQ---TYTKRETEAIMKEARGP 62 (86)
T ss_dssp TSCBCHHHHHHHHHHTSC---CCSHHHHHHHHHHHHCS
T ss_pred CCcCcHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHh
Confidence 368999999999999874 678889 88887744
No 77
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=43.36 E-value=74 Score=21.74 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
..|..+-+..|+++...|=.++ .+..|.+|+..+++..|. .++.++++.+++.+--
T Consensus 15 ~~l~~~~~~~l~~~F~~~D~~~----------------~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~ 70 (161)
T 3fwb_A 15 SELLEEQKQEIYEAFSLFDMNN----------------DGFLDYHELKVAMKALGF---ELPKREILDLIDEYDS 70 (161)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTS----------------SSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHCCCC----------------CCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhCc
Confidence 4567777777777555442222 367899999999999773 6788899988887643
No 78
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=43.09 E-value=17 Score=27.83 Aligned_cols=30 Identities=10% Similarity=0.254 Sum_probs=21.4
Q ss_pred ccceeEEEeeccCCCcCcccccceeccc-ccHHHHHHHHHHHH
Q psy521 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQD-FEVEFVDVLNQQCY 76 (173)
Q Consensus 35 ~~~rk~Yml~~l~Ps~eiTGG~WYtD~e-lD~eFI~~L~~~~~ 76 (173)
+.-||.|.+ ||+||++++ . ++.+.+.+.|.
T Consensus 7 ~~~~~~~y~----------a~~~F~~~e~~--~~~~~l~~~l~ 37 (161)
T 2f62_A 7 HHMRKIYIA----------GPAVFNPDMGA--SYYNKVRELLK 37 (161)
T ss_dssp CCCCEEEEE----------SGGGGSTTTTH--HHHHHHHHHHH
T ss_pred hhhhceEEE----------ECCCCCHHHHH--HHHHHHHHHHH
Confidence 355666654 889999988 7 67777766554
No 79
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=42.40 E-value=77 Score=23.25 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecC---CC--CeeEEeecCC
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI---DG--TDMYRAVSPY 157 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~---~g--~~~YR~~~~~ 157 (173)
.+--+|.+.|.+.. -...++..-|-.+|+.|+-+|.|+..... +| ...|+.+...
T Consensus 48 ~~Gyei~k~l~~~~-~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~G 107 (138)
T 2e1n_A 48 SYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQAN 107 (138)
T ss_dssp EEHHHHHHHHHHHS-TTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSC
T ss_pred CcHHHHHHHHHHHc-CCCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHH
Confidence 45678888888754 35689999999999999999999987532 23 2678887653
No 80
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=42.40 E-value=51 Score=24.73 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecC-CC---CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI-DG---TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~-~g---~~~YR~~~ 155 (173)
.+.-||.+.+..+.-.-..++...|-..|+.|+-+|.|+..... +| ...|+.+.
T Consensus 16 ~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 16 ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQ 73 (179)
T ss_dssp BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECH
T ss_pred CCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeCh
Confidence 67889999997543223478999999999999999999986432 22 36788774
No 81
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=42.08 E-value=5.4 Score=32.82 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 121 LSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 121 Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
+++++|+++|+.|+-+|.|-...+. .-|+++
T Consensus 237 ~~~~~v~~al~~L~~eG~IYsTiDd---~h~k~t 267 (270)
T 2pi2_A 237 MSVSSIKQAVDFLSNEGHIYSTVDD---DHFKST 267 (270)
T ss_dssp ----------------------------------
T ss_pred CCHHHHHHHHHHHHhCCEEeccccc---cceeec
Confidence 7889999999999999999876532 237654
No 82
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=41.96 E-value=58 Score=22.88 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=39.1
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
..+-.+..+.|.+++..|+.+- +++-..|-+..+ +.+++.+||...|+.+.
T Consensus 45 ~rIs~~a~~~l~~vle~~~~~V---------------------~~dA~~~a~hak--Rktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 45 KRISGLIYEEVRNVLKTFLESV---------------------IRDAVTYTEHAK--RKTVTSLDVVYALKRQG 95 (103)
T ss_dssp CEECTTHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHTT--CSEECHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHcC--CCcCcHHHHHHHHHHcC
Confidence 4677788888988888888873 566667777665 45678999999888874
No 83
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=41.85 E-value=89 Score=22.01 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec--CCC--CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN--IDG--TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~--~~g--~~~YR~~~ 155 (173)
.+--+|.+.|.+.|. ..++..-|-.+|+.|+-+|.|+.... .+| ...|+.+.
T Consensus 25 ~~Gyei~~~l~~~g~--~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 25 TYGYEITRHLNDLGF--TEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp BCHHHHHHHHHHHTC--TTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred CCHHHHHHHHHHcCC--CCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 568899999998763 36799999999999999999998753 223 36688764
No 84
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=41.79 E-value=76 Score=21.19 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~~~ 155 (173)
.|+.||++.+ .++..-|...|+.|+-.|.|++... |. ..|+.+.
T Consensus 35 ~~~~ela~~l--------~is~~tv~~~l~~L~~~gli~~~~~--gr~~~y~l~~ 79 (114)
T 2oqg_A 35 QSASSLATRL--------PVSRQAIAKHLNALQACGLVESVKV--GREIRYRALG 79 (114)
T ss_dssp BCHHHHHHHS--------SSCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECS
T ss_pred CCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeEEec--CCEEEEEech
Confidence 5777777654 4788899999999999999998753 43 4566654
No 85
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=41.30 E-value=46 Score=25.94 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecC--C-C-CeeEEeecC
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI--D-G-TDMYRAVSP 156 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~--~-g-~~~YR~~~~ 156 (173)
.|+.+|++.+ .+|..-|-..|+.|.-.|.|++.... + | ...|+++..
T Consensus 29 ~s~~eLa~~l--------~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 29 YFVSELSREL--------GVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp EEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred CCHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChH
Confidence 6888998887 37888999999999999999987642 1 2 366777654
No 86
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=41.19 E-value=29 Score=28.38 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=43.5
Q ss_pred cccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhC-CceeecCHHHHHHHHHHHccc
Q psy521 60 DQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLG-ISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 60 D~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~-is~v~Ls~~dI~~iL~~Lv~D 136 (173)
-++|=.|+=-.|-++|..-...+ .+..+++|++..+++.. ...-.+|.+||..-++.|--=
T Consensus 69 ~gdfy~eLavqIvEvC~~tr~~n----------------GGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~L 130 (234)
T 3cuq_A 69 VGDFYYELGVQIIEVCLALKHRN----------------GGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKAL 130 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------SSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGG
T ss_pred cchHHHHHHHHHHHHHHHHHHhc----------------CCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhc
Confidence 35666666666666666655442 47799999999998754 333579999999999988653
No 87
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=41.16 E-value=52 Score=23.10 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=38.5
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
..+-.+..+.|.+++..|+.+- +++-..|-+..+ +.+++.+||...|+.|.
T Consensus 45 ~rIs~~a~~~l~~vle~~~~~V---------------------~~dA~~~a~hak--RktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 45 KRISGLIYEETRGVLKVFLENV---------------------IRDAVTYTEHAK--RKTVTAMDVVYALKRQG 95 (103)
T ss_dssp CEECTTHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHTT--CSEECHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHcC--CCcCCHHHHHHHHHHcC
Confidence 4677778888888888888873 566666766655 45678999998888874
No 88
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=41.11 E-value=6.4 Score=22.01 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=6.2
Q ss_pred CccccC-ccCCC
Q psy521 162 GLSTSP-CGVCP 172 (173)
Q Consensus 162 ~~~~~P-CG~CP 172 (173)
+...+| ||+|-
T Consensus 12 ~~~riPCCG~Cs 23 (28)
T 1y29_A 12 ATQKIPCCGVCS 23 (28)
T ss_dssp TCCSCCBSSCBS
T ss_pred Cccccccccccc
Confidence 445566 46664
No 89
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.10 E-value=50 Score=24.62 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHh-----CCceeecCHHHHHHHHHHHcccCeeE
Q psy521 68 VDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDL-----GISKVELSEEDIRTILETLLFDGKIE 140 (173)
Q Consensus 68 I~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~-----~is~v~Ls~~dI~~iL~~Lv~Dg~iE 140 (173)
+..+...+++||..+. -|..|+.+.|.+. |.....++.+.|+.+|+-|.-.|.|-
T Consensus 4 ~~~a~~~Al~~Ls~r~------------------~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ld 63 (159)
T 3c1d_A 4 YARLLDRAVRILAVRD------------------HSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLD 63 (159)
T ss_dssp HHHHHHHHHHHHTTSC------------------CCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhhccc------------------ccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcC
Confidence 4567788888998752 5899999999974 42222379999999999999888773
No 90
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=40.44 E-value=77 Score=21.73 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec-CCCC--eeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN-IDGT--DMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~-~~g~--~~YR~~~ 155 (173)
.+--+|.+.|.+ ...++..-|-.+|+.|+-+|.|++... .+|. ..|+.+.
T Consensus 23 ~~gyel~~~l~~----~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~ 75 (108)
T 3l7w_A 23 SYGYDISQTIKL----IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTD 75 (108)
T ss_dssp EEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECH
T ss_pred CcHHHHHHHHHH----HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECH
Confidence 356678888776 246899999999999999999998753 2553 5677764
No 91
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=40.15 E-value=44 Score=23.30 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+.++++..| ..++.++++.+++.+--
T Consensus 115 ~G~i~~~el~~~l~~~g---~~~~~~~~~~~~~~~D~ 148 (169)
T 3qrx_A 115 SGTITIKDLRRVAKELG---ENLTEEELQEMIAEADR 148 (169)
T ss_dssp SSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHHHHcC---CCCCHHHHHHHHHHhCC
Confidence 47899999999999887 57899999999998744
No 92
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=40.12 E-value=55 Score=21.39 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.+.+|+...++..|. .++.++++.+++.+-.|
T Consensus 43 ~G~I~~~El~~~l~~~g~---~~~~~e~~~l~~~~D~d 77 (94)
T 2kz2_A 43 NGYISAAELRHVMTNLGE---KLTDEEVDEMIREADID 77 (94)
T ss_dssp CSCBCHHHHHHHHHHHTC---CCCHHHHHHHHHHHCTT
T ss_pred cCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 378999999999999874 58999999999877443
No 93
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=39.74 E-value=20 Score=23.56 Aligned_cols=15 Identities=7% Similarity=0.326 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHhCCc
Q psy521 103 TPKEVRKFITDLGIS 117 (173)
Q Consensus 103 T~~eI~~~I~~~~is 117 (173)
|+++|.+|+...|..
T Consensus 6 s~~~V~~WL~~lgl~ 20 (76)
T 2f3n_A 6 SKFDVGDWLESIHLG 20 (76)
T ss_dssp CHHHHHHHHHHTTCG
T ss_pred CHHHHHHHHHHCCCH
Confidence 567777777766644
No 94
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=39.68 E-value=51 Score=22.65 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+.+++...|. .++.++++.+++.+--
T Consensus 97 ~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~d~ 130 (148)
T 1exr_A 97 NGLISAAELRHVMTNLGE---KLTDDEVDEMIREADI 130 (148)
T ss_dssp SSCBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHCS
T ss_pred CCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCC
Confidence 478999999999999873 6899999999997643
No 95
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=39.47 E-value=68 Score=22.39 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=33.8
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHH
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTIL 130 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL 130 (173)
=++..+||..|.+.+++|+.+- +.+...|=+..| +.+++.+||.-++
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~i---------------------a~Dl~~fA~HAg--RkTI~~eDV~L~~ 77 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEM---------------------GSDLQAFARHAG--RGVVNKSDLMLYL 77 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHTT--CSEECHHHHHHHT
T ss_pred ceeCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHcC--CCccCHHHHHHHH
Confidence 3588999999999999999763 556666656555 4456777776543
No 96
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=38.99 E-value=86 Score=21.02 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 62 DFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 62 elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.|..+=+..|++....+=.++ .+..|.+|+..+++..|. .++.++++.+++.+--|
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~----------------~G~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~d~~ 59 (153)
T 3ox6_A 4 SLRPEEIEELREAFREFDKDK----------------DGYINCRDLGNCMRTMGY---MPTEMELIELSQQINMN 59 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC----------------SSSCCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------------CCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCC
Confidence 455666677766555443332 367999999999998874 57888888888876443
No 97
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=38.96 E-value=32 Score=22.53 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+...++..+.....++.++++.+++.+--
T Consensus 55 ~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~ 91 (109)
T 1rwy_A 55 SGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDK 91 (109)
T ss_dssp SSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCT
T ss_pred CCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCC
Confidence 4789999999999998533457899999999998743
No 98
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=38.76 E-value=40 Score=22.80 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+.++++++| ++.+++++|++.+=-|
T Consensus 25 dG~Is~~el~~~l~~~~-----l~~~~l~~i~~~~D~d 57 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSG-----LPDLILGKIWDLADTD 57 (99)
T ss_dssp SSCCCSHHHHHHHHTSS-----SCHHHHHHHHHHHCCS
T ss_pred CCcCCHHHHHHHHHHcC-----CCHHHHHHHHHHHCCC
Confidence 47899999999999876 6789999999876543
No 99
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=38.73 E-value=52 Score=22.64 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+..++...| ++.++++.+++.+--
T Consensus 112 ~G~i~~~E~~~~l~~~~-----~~~~~~~~~~~~~D~ 143 (166)
T 3akb_A 112 DGAVTVADTARALTAFG-----VPEDLARQAAAALDT 143 (166)
T ss_dssp SSCCBHHHHHHHHHHTT-----CCHHHHHHHHHHHCT
T ss_pred CCcCCHHHHHHHHHHhC-----CCHHHHHHHHHHhCC
Confidence 47899999999999987 899999999997643
No 100
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=38.53 E-value=66 Score=24.01 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecC---CC--CeeEEeecCC
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI---DG--TDMYRAVSPY 157 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~---~g--~~~YR~~~~~ 157 (173)
.+--+|.+.|.+.. -...++..-|-.+|+.|+-+|.|+..... +| ...|+.+...
T Consensus 58 ~~GYeI~k~l~~~~-~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~G 117 (148)
T 2zfw_A 58 SYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQAN 117 (148)
T ss_dssp EEHHHHHHHHHHHC-TTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSS
T ss_pred CcHHHHHHHHHHHc-CCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHH
Confidence 45678888888764 35688999999999999999999987432 23 3679987653
No 101
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=38.07 E-value=39 Score=19.76 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.+.+|+...++..| ..++.++++.+++.+=-
T Consensus 15 ~G~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~D~ 48 (67)
T 1tiz_A 15 DGKLSLDEFREVALAFS---PYFTQEDIVKFFEEIDV 48 (67)
T ss_dssp SSCEEHHHHHHHHHHTC---TTSCHHHHHHHHHHHCC
T ss_pred CCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHHCC
Confidence 46799999999999877 35789999999988743
No 102
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=38.06 E-value=19 Score=26.41 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCC
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~ 157 (173)
.+|.++|++.+ .++...+++||..|.--|.|+..+..+| .|++.+.+
T Consensus 28 ~~s~~~IA~~~--------~i~~~~l~kil~~L~~aGlv~s~rG~~G--Gy~Lar~p 74 (143)
T 3t8r_A 28 CISLKSIAEEN--------NLSDLYLEQLVGPLRNAGLIRSVRGAKG--GYQLRVPA 74 (143)
T ss_dssp CEEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEECSSSSS--EEEESSCG
T ss_pred CcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCEEEecCCCCC--CeeecCCc
Confidence 47888888653 4688899999999999999998765455 49988765
No 103
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=37.78 E-value=41 Score=22.75 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.++.|.+|+..+++..|. .++.++++.+++.+-
T Consensus 93 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~d 125 (142)
T 2bl0_C 93 TGYIPKAALQDALLNLGD---RLKPHEFAEFLGITE 125 (142)
T ss_dssp CSCEEHHHHHHHHHHSSS---CCCHHHHHHHHHHHC
T ss_pred CCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhC
Confidence 478999999999998873 589999999999885
No 104
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=37.52 E-value=44 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+...++++| |+.+++++|++..=.|
T Consensus 28 dG~Is~~el~~~l~~~g-----l~~~el~~i~~~~D~d 60 (106)
T 1eh2_A 28 NGFLSGDKVKPVLLNSK-----LPVDILGRVWELSDID 60 (106)
T ss_dssp SSCCBHHHHHHHHHTTT-----CCHHHHHHHHHHHCSS
T ss_pred CCeEcHHHHHHHHHHcC-----CCHHHHHHHHHHHcCC
Confidence 47899999999999887 6789999999876543
No 105
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=37.43 E-value=83 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
+..|.+|+..+++..|. .++.++++.+++.+-.
T Consensus 26 G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~ 58 (147)
T 4ds7_A 26 GSISASELATVMRSLGL---SPSEAEVADLMNEIDV 58 (147)
T ss_dssp SEEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHCT
T ss_pred CCcCHHHHHHHHHHhCC---CCCHHHHHHHHHHhcc
Confidence 67889999999988764 5788888888877643
No 106
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=37.21 E-value=56 Score=22.92 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+.+.++..|. .++.++++.+++.+
T Consensus 84 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~ 115 (165)
T 1k94_A 84 SGTVEHHELRQAIGLMGY---RLSPQTLTTIVKRY 115 (165)
T ss_dssp CSBCCHHHHHHHHHHTTC---CCCHHHHHHHHHHH
T ss_pred CceECHHHHHHHHHHhCC---CCCHHHHHHHHHHh
Confidence 468999999999999873 58999999999988
No 107
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=37.18 E-value=72 Score=22.02 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHH-HHHHcccCeeEEEecCCCCeeEEe
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTI-LETLLFDGKIEQINNIDGTDMYRA 153 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~i-L~~Lv~Dg~iE~~~~~~g~~~YR~ 153 (173)
..|++||++.++.. .++..+.+.| -++|.-..+|+-+ ||...||.
T Consensus 31 PltL~EILde~~~~-----d~~~~~k~wL~~eaL~~npkI~~~---dgkf~fkP 76 (81)
T 1d8j_A 31 PLTLDEILDETQHL-----DIGLKQKQWLMTEALVNNPKIEVI---DGKYAFKP 76 (81)
T ss_dssp CBCHHHHHHHHTCS-----SCCHHHHHHHHTTHHHHCTTEEEC---SSSEEECC
T ss_pred CccHHHHHHHHhcc-----CCCHHHHHHHHHHHhhcCCceEEe---CCceeccC
Confidence 37999999998854 4678888888 8899999999964 68766663
No 108
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=37.16 E-value=29 Score=23.81 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+.++++..| ..++.++++.+++.+
T Consensus 98 ~G~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 98 TGYLTKSQMKNILTTWG---DALTDQEAIDALNAF 129 (146)
T ss_dssp SSEEEHHHHHHHHHHSS---SCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHc
Confidence 47899999999999876 468999999999988
No 109
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=36.77 E-value=50 Score=22.67 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+.++++..| ..++.++++.+++.+--|
T Consensus 110 ~G~I~~~e~~~~l~~~g---~~~~~~~~~~~~~~~d~~ 144 (162)
T 1top_A 110 DGFIDIEELGEILRATG---EHVTEEDIEDLMKDSDKN 144 (162)
T ss_dssp SSCBCHHHHHHHHHTTT---CCCCHHHHHHHHHHHCTT
T ss_pred CCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 47899999999999887 468999999999987443
No 110
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=36.11 E-value=36 Score=23.06 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=37.7
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
..+..+..+.|++.+..|+.+- .++-..|-+..+ +.+++.+||...|+.+
T Consensus 26 ~rIs~da~~~l~~~l~~~~~~I---------------------~~dA~~~a~ha~--RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 26 KRISGLIYEETRGVLKVFLENV---------------------IRDAVTYTEHAK--RKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CEECTTHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHTT--CSEECHHHHHHHTTTT
T ss_pred hhccHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHcC--CCcCcHHHHHHHHHHc
Confidence 5566778889999999999873 566667766666 4567889988877765
No 111
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=36.02 E-value=68 Score=23.99 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeE
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE 140 (173)
.+...+++||..+. -|..|+.+.|.+.|+ +.+.|+.+|+-|.-.|.|.
T Consensus 18 ~a~~~Al~~Ls~r~------------------~s~~EL~~KL~~kg~-----~~e~Ie~vl~~l~~~g~ld 65 (162)
T 3dfg_A 18 TPVQRALGLLVHRE------------------HSKKELNRKLQARGI-----EPEAAQAAVERLAGEGWQD 65 (162)
T ss_dssp CHHHHHHHHHHHSC------------------CCHHHHHHHHHHTTC-----CHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhchh------------------hhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCCCC
Confidence 45677888888752 489999999999874 6889999999998888774
No 112
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=35.49 E-value=1e+02 Score=20.85 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
..|..+|++.+ .++..-|..+|+.|+-.|.|++..+
T Consensus 43 ~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~~ 78 (138)
T 3bpv_A 43 GIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp TCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeecC
Confidence 45667776665 3678899999999999999999764
No 113
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=35.23 E-value=36 Score=26.24 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCC-CCCHHHHHHHHHHh-CCceeecCHHHHHHHHHHHccc
Q psy521 65 VEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLA-CATPKEVRKFITDL-GISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 65 ~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~-~~T~~eI~~~I~~~-~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
+.|-..|..++..|+..... ++ ...+.+ ..|+.|+..-+++. ..-.-.+|.+|+.+-++.|.-=
T Consensus 10 ~~f~~ELa~qi~e~c~~~~~-------~~-~~~~GG~~I~L~dl~~~~nra~R~g~~lISp~Dl~~A~~~l~~L 75 (169)
T 1u5t_B 10 ELFLDEIAREIYEFTLSEFK-------DL-NSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHL 75 (169)
T ss_dssp TTHHHHHHHHHHHHHHTTTT-------TS-SSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGG
T ss_pred hHHHHHHHHHHHHHHhhcch-------hh-HHhcCceeEEHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHhc
Confidence 45777788888888884311 00 112347 78999999999987 4323478999999999888653
No 114
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=35.06 E-value=44 Score=22.56 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+.++++..|. .++.++++.+++.+
T Consensus 90 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~ 121 (140)
T 1ggw_A 90 TGMIGVGELRYVLTSLGE---KLSNEEMDELLKGV 121 (140)
T ss_dssp SSCCCHHHHHHHHHHHHS---CSCHHHHHHHHHHT
T ss_pred CCcEeHHHHHHHHHHcCC---CCCHHHHHHHHHhc
Confidence 478999999999998763 58999999999875
No 115
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=35.05 E-value=35 Score=29.20 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 91 ~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
..||.+. -++.|++|+.+|-.+.+ ....||.+|++.|+.=|
T Consensus 273 TaPYmHd-G~~~tLeevv~~y~~~~-~~~~Lt~~E~~~LvAFL 313 (341)
T 4aan_A 273 TMPYFHS-GKVWKLKDAVKIMGSAQ-LGISITDADADKIVTFL 313 (341)
T ss_dssp SCSBSTT-CCBCCHHHHHHHHHHHH-HSCCCCHHHHHHHHHHH
T ss_pred cCCCccC-CCcCCHHHHHHHHhccC-cCCCCCHHHHHHHHHHH
Confidence 4555543 36899999999988654 35789999998887655
No 116
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=34.36 E-value=49 Score=23.10 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+...+...|. .++.++++.+++.+=.|
T Consensus 97 ~G~I~~~El~~~l~~~g~---~~~~~e~~~l~~~~D~d 131 (148)
T 2lmt_A 97 DGFISPAELRFVMINLGE---KVTDEEIDEMIREADFD 131 (148)
T ss_dssp SSEECHHHHHHHHHHHTC---CCCHHHHHHHHHHHCCS
T ss_pred cCcCcHHHHHHHHHHcCc---cccHHHHHHHHHHhCCC
Confidence 478999999999999884 68999999999887543
No 117
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=34.26 E-value=93 Score=20.00 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec-CCCC-eeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN-IDGT-DMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~-~~g~-~~YR~~~ 155 (173)
.|..+|++.+ .++..-|-..|+.|+-.|.|++... .++. ..|+++.
T Consensus 31 ~~~~ela~~l--------~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~ 78 (100)
T 1ub9_A 31 APFSQIQKVL--------DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITD 78 (100)
T ss_dssp EEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH
T ss_pred cCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECH
Confidence 5788888765 3677889999999999999997653 2343 4566654
No 118
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=34.17 E-value=47 Score=22.32 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.++.|.+|+.++++..| ..++.++++.+++.+-
T Consensus 98 ~G~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d 130 (147)
T 4ds7_A 98 DGLISAAELKHVLTSIG---EKLTDAEVDEMLREVS 130 (147)
T ss_dssp SSEECHHHHHHHHHHTT---CCCCHHHHHHHHHHHS
T ss_pred CCeECHHHHHHHHHHcC---CCCCHHHHHHHHHHhc
Confidence 47899999999999887 4689999999999874
No 119
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=34.12 E-value=37 Score=24.84 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=34.1
Q ss_pred CCcCcccccceecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCC
Q psy521 48 PDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGI 116 (173)
Q Consensus 48 Ps~eiTGG~WYtD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~i 116 (173)
|.+.+.||. .+.||.+||+.=+.....||+.-.. .| .......+..||.....
T Consensus 74 P~K~~~~~~---~~~~~~~fie~Rr~~Le~fL~~l~~-------~p------~l~~s~~~~~FL~~~~~ 126 (138)
T 3iq2_A 74 PEKFIVKGM---VERFNDDFIETRRKALHKFLNRIAD-------HP------TLTFNEDFKIFLTAQAW 126 (138)
T ss_dssp CCCC----C---CGGGCHHHHHHHHHHHHHHHHHHHH-------ST------TGGGCHHHHHHHHTTCB
T ss_pred Ccchhhccc---cccCCHHHHHHHHHHHHHHHHHHHc-------CH------hhhcChHHHhhhCCCCC
Confidence 455544432 3678999999999999999997532 11 22345688888886553
No 120
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=33.86 E-value=38 Score=24.40 Aligned_cols=32 Identities=13% Similarity=0.371 Sum_probs=27.5
Q ss_pred cCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHH
Q psy521 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILET 132 (173)
Q Consensus 98 ~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~ 132 (173)
..++.|.+|+...+...| ..||.++|+.+++.
T Consensus 98 ~~G~I~~~el~~~l~~~g---~~ls~~ei~~~~~~ 129 (153)
T 3i5g_B 98 GQGFIPEDYLKDLLENMG---DNFSKEEIKNVWKD 129 (153)
T ss_dssp CSSCCCHHHHHHHHHSSS---SCCCHHHHHHHHTT
T ss_pred CCCeEeHHHHHHHHHHcC---CcCCHHHHHHHHHH
Confidence 358999999999999887 36999999999874
No 121
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=33.73 E-value=53 Score=22.56 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=28.3
Q ss_pred cCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 98 RLACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 98 ~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
..++.|.+|+..+++..|. .++.++++.+++.+
T Consensus 98 ~~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~ 130 (153)
T 2ovk_B 98 GQGFIPEDYLKDLLENMGD---NFSKEEIKNVWKDA 130 (153)
T ss_dssp CSSCCCHHHHHHHHHHSSS---CCCHHHHHHHHHHC
T ss_pred CCCeEcHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 3578999999999999873 68999999998865
No 122
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=33.60 E-value=34 Score=22.41 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.+.+|+...++..+-....++.++++.+++.+=-
T Consensus 56 ~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~ 92 (110)
T 1pva_A 56 SGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADK 92 (110)
T ss_dssp SSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCC
Confidence 4789999999999987432356899999999998743
No 123
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=33.47 E-value=93 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
+..++++|.+-+.-.. ...|+.+|++.|-+.+
T Consensus 318 G~~~~~~l~enl~a~~--~~~Ls~ee~~~i~~~~ 349 (353)
T 3erp_A 318 GASKPSQIEDAVGMLA--NRRFSAAECAEIDAIL 349 (353)
T ss_dssp CCSSHHHHHHHHHGGG--GCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHH
Confidence 4568999999887642 5689999999886665
No 124
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=33.45 E-value=23 Score=21.18 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+...++..| ..++.++++.+++.+-.
T Consensus 20 ~G~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~ 53 (71)
T 2b1u_A 20 DGHITVDELRRAMAGLG---QPLPQEELDAMIREADV 53 (71)
T ss_dssp SSEEEHHHHHHHGGGTT---CSSCHHHHHHHHHHCCS
T ss_pred CCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCC
Confidence 46799999999999887 36899999999987643
No 125
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=33.40 E-value=46 Score=20.77 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.+.+|+...++..|. .++.++++.+++.+-.
T Consensus 37 ~G~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~d~ 70 (87)
T 1s6j_A 37 SGTITFDELKDGLKRVGS---ELMESEIKDLMDAADI 70 (87)
T ss_dssp SSCEEHHHHHHHHHTTTS---SCCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCC
Confidence 478999999999998874 5889999999998743
No 126
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=33.26 E-value=73 Score=24.08 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEE
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQI 142 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~ 142 (173)
.||..||++.+ |++ ..-+...|+.|+-+|.|++.
T Consensus 24 ~~s~~eia~~l---gl~-----~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRF---RIT-----PRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHH---TSC-----HHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHc---CCC-----cHHHHHHHHHHHHCCCEEec
Confidence 38999999876 444 33489999999999999875
No 127
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=33.19 E-value=96 Score=21.26 Aligned_cols=51 Identities=6% Similarity=0.172 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHH
Q psy521 62 DFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILE 131 (173)
Q Consensus 62 elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~ 131 (173)
.|..+-++.|+++-..|=.++ .+..|.+|+...++..|. .++.++++.+++
T Consensus 11 ~l~~~~~~~l~~~F~~~D~d~----------------~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~ 61 (156)
T 1wdc_B 11 KLPQKQIQEMKEAFSMIDVDR----------------DGFVSKEDIKAISEQLGR---APDDKELTAMLK 61 (156)
T ss_dssp -CCHHHHHHHHHHHHHHCTTC----------------SSSCCHHHHHHHHHHHSS---CCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHCCCC----------------CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHH
Confidence 455566666666544332221 367889999999888763 467777777664
No 128
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=33.12 E-value=28 Score=23.17 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHhCCce
Q psy521 102 ATPKEVRKFITDLGISK 118 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~ 118 (173)
=|+++|.+|+...|...
T Consensus 10 Ws~~~V~~WL~~lgl~~ 26 (81)
T 3bq7_A 10 WGTEEVAAWLEHLSLCE 26 (81)
T ss_dssp CCHHHHHHHHHHTTCGG
T ss_pred CCHHHHHHHHHHCCCHH
Confidence 57888888888877553
No 129
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=32.98 E-value=43 Score=21.91 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+...++..+.....++.++++.+++.+=-
T Consensus 56 ~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~ 92 (109)
T 1bu3_A 56 SGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDS 92 (109)
T ss_dssp SSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCC
Confidence 4789999999999998522356899999999987643
No 130
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=32.40 E-value=40 Score=23.18 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+.++++..| ..++.++++.+++.+-.|
T Consensus 110 ~G~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~ 144 (161)
T 3fwb_A 110 TGKISIKNLRRVAKELG---ETLTDEELRAMIEEFDLD 144 (161)
T ss_dssp SSEECHHHHHHHHHHTT---CCCCHHHHHHHHHTTCSS
T ss_pred CCeEeHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 47899999999999887 468999999999877543
No 131
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=32.19 E-value=1.1e+02 Score=21.96 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=22.3
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++..+
T Consensus 70 ~is~~tvs~~l~~Le~~GlV~r~~~ 94 (168)
T 2nyx_A 70 GVQPSATGRMVDRLVGAELIDRLPH 94 (168)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccC
Confidence 4788899999999999999999764
No 132
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=32.09 E-value=1.2e+02 Score=20.56 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
..|..||++.+... -.++..-|-.+|+.|+=.|.|++..+
T Consensus 24 ~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 24 SVSANEIVVEIQKY----KEVSDKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp SEEHHHHHHHHHTT----SCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHhhc----CCCChhhHHHHHHHHHHCCceEEEeC
Confidence 37899999998753 24678889999999999999999863
No 133
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=31.96 E-value=1.5e+02 Score=24.07 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=39.6
Q ss_pred ccccce---ecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHH
Q psy521 53 TGGTWY---QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTI 129 (173)
Q Consensus 53 TGG~WY---tD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~i 129 (173)
+-+.|| .-...+.+.|+.|.+.+.+-+++- ++.+++.+.|+....++.++..+.
T Consensus 225 ~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~-----------------------~~~~~~~~~g~~~~~~~~~~~~~~ 281 (301)
T 2qpq_A 225 ELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRD-----------------------DVQKKLADLGYSTASDGPEVFQKM 281 (301)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHTCEEEEECHHHHHHH
T ss_pred EEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCH-----------------------HHHHHHHHCCCcCCCCCHHHHHHH
Confidence 345676 567899999999999999887652 345555666666666666666665
Q ss_pred HH
Q psy521 130 LE 131 (173)
Q Consensus 130 L~ 131 (173)
++
T Consensus 282 ~~ 283 (301)
T 2qpq_A 282 VE 283 (301)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 134
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=31.95 E-value=1.1e+02 Score=20.04 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEeec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRAVS 155 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~~~ 155 (173)
..|+.||++.+ | ++..-|..-|+.|.-.|.|++.. +|. ..|+...
T Consensus 36 ~~~~~ela~~l---~-----is~~tvs~~L~~L~~~Glv~~~~--~g~~~~y~l~~ 81 (98)
T 3jth_A 36 ELSVGELCAKL---Q-----LSQSALSQHLAWLRRDGLVTTRK--EAQTVYYTLKS 81 (98)
T ss_dssp CEEHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEEEC--CTTCCEEEECC
T ss_pred CCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCeEEEE--eCCEEEEEECH
Confidence 36788888776 3 56777889999999999999875 454 4576654
No 135
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=31.89 E-value=52 Score=25.10 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeE
Q psy521 64 EVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIE 140 (173)
Q Consensus 64 D~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE 140 (173)
..+-+..+...+++||..+. -|..|+.+.|.+.| ++.+.|+.+|+-|.-.|.|-
T Consensus 13 ~~~~~~~a~~~Al~~Ls~r~------------------~S~~EL~~KL~~kg-----~~~~~ie~vl~~L~~~g~ld 66 (177)
T 3e3v_A 13 LADDISKGYNAALNYLSYQL------------------RTRKEVEDKLRSLD-----IHEDYISEIINKLIDLDLIN 66 (177)
T ss_dssp CHHHHHHHHHHHHHHHHSSC------------------CCHHHHHTTSGGGT-----CCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHhcccc------------------ccHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCC
Confidence 34556667777888888752 48999999998876 56899999999998888773
No 136
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.88 E-value=47 Score=21.75 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+...++..| ++.++++++++.+=-
T Consensus 23 dG~I~~~el~~~l~~~g-----~~~~~~~~i~~~~D~ 54 (92)
T 1fi6_A 23 NGFIPGSAAKEFFTKSK-----LPILELSHIWELSDF 54 (92)
T ss_dssp TCEEEHHHHHHHHHHHS-----SCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHcC-----CCHHHHHHHHHHHCC
Confidence 47899999999999876 678899999987643
No 137
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=31.67 E-value=49 Score=21.62 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.+.+|+...++..+-....++.++++.+++.+=-
T Consensus 55 ~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~ 91 (109)
T 5pal_A 55 SGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDS 91 (109)
T ss_dssp SSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 4789999999999987433457899999999988743
No 138
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=31.55 E-value=84 Score=21.53 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+.++++..| ..++.++++.+++.+=-
T Consensus 93 ~G~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~D~ 126 (143)
T 2obh_A 93 TGKISFKNLKRVAKELG---ENLTDEELQEMIDEADR 126 (143)
T ss_dssp SSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCC
Confidence 47899999999999877 35899999999987643
No 139
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.27 E-value=59 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+.+.+...| ..++.++|+.+++..
T Consensus 98 ~G~I~~~el~~~l~~~g---~~~~~~ei~~l~~~~ 129 (176)
T 2lhi_A 98 DGLISAAELKHVLTSIG---EKLTDAEVDDMLREV 129 (176)
T ss_dssp SSSBCHHHHHHHHHTTT---CCCCHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHcC---cccchHHHHHHHHhh
Confidence 57899999999999877 468999999999865
No 140
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=31.18 E-value=51 Score=24.20 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+.++++..| ++.++++.+++.+=-
T Consensus 142 ~G~Is~~El~~~l~~~g-----~~~~~~~~~~~~~D~ 173 (208)
T 2hpk_A 142 DGTVDVDELKTMMKAFD-----VPQEAAYTFFEKADT 173 (208)
T ss_dssp SSSBCHHHHHHHHHHTT-----SCTTHHHHHHHHHCT
T ss_pred CCcCCHHHHHHHHHHhC-----cCHHHHHHHHHHhCC
Confidence 47899999999999988 788999999988643
No 141
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=31.12 E-value=91 Score=21.84 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEe
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
.|+.||++.+. ++..-|...|+.|+-.|.|++..
T Consensus 43 ~t~~eLa~~l~--------~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 43 IDTDALSKSLK--------LDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp EEHHHHHHHHT--------SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEeeC
Confidence 69999998874 68899999999999999999865
No 142
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=31.02 E-value=43 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCC
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~ 157 (173)
.+|.++|++.+ .++..-+++|+..|.-.|.|+..+. .| .|++.+.+
T Consensus 30 ~~~~~~iA~~~--------~i~~~~l~kil~~L~~~Glv~s~rG-~G--Gy~L~~~p 75 (149)
T 1ylf_A 30 LCTSDYMAESV--------NTNPVVIRKIMSYLKQAGFVYVNRG-PG--GAGLLKDL 75 (149)
T ss_dssp GCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEC----C--CEEESSCG
T ss_pred CcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEccC-CC--ceEeCCCh
Confidence 37899998764 4688899999999999999998765 55 48887754
No 143
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=30.98 E-value=1.7e+02 Score=21.88 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCC
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~ 157 (173)
.+|.++|++-+ .++..-+++||..|.--|.|+..+..+| .|++.+++
T Consensus 44 ~~s~~eIA~~~--------~i~~~~l~kil~~L~~aGlv~s~rG~~G--Gy~Lar~p 90 (159)
T 3lwf_A 44 PISLRSIAQDK--------NLSEHYLEQLIGPLRNAGIVKSIRGAHG--GYVLNGDP 90 (159)
T ss_dssp CBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECSTTC--EEEECSCT
T ss_pred CcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCeEEEecCCCC--ceEecCCH
Confidence 47899998764 4578899999999999999999875555 49988765
No 144
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=30.97 E-value=39 Score=22.08 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.++.|.+|+..+++..+.....++.++++.+++.+=
T Consensus 55 ~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D 90 (108)
T 2pvb_A 55 SGFIEEDELKLFLQNFSPSARALTDAETKAFLADGD 90 (108)
T ss_dssp SSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC
Confidence 478999999999998742235689999999998764
No 145
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.96 E-value=1e+02 Score=21.88 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.+||.++|++.+ .+|..+|.++|+.|+=.|.|++...
T Consensus 50 ~~ps~~~LA~~l--------~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 50 LFPTPAELAERM--------TVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSCCHHHHHHTS--------SSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 358999988753 4689999999999999999998653
No 146
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=30.84 E-value=1.2e+02 Score=21.50 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
..|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 60 ~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 60 NLSNAKLAERS--------FIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp TCCHHHHHHHH--------TSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHH--------CCCHHHHHHHHHHHHHCcCeEecCC
Confidence 46666666655 2566778889999999999999875
No 147
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=30.78 E-value=1.1e+02 Score=21.54 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~ 153 (173)
.+|..||++.+... ..++..-|-.+|+.|+-.|.|++..+ .....|++
T Consensus 24 ~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~~ 71 (138)
T 2g9w_A 24 PQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYAP 71 (138)
T ss_dssp CEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEEE
T ss_pred CCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEec-CCeEEEEe
Confidence 47999999998753 24688899999999999999999763 22345554
No 148
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=30.73 E-value=33 Score=23.24 Aligned_cols=31 Identities=6% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILET 132 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~ 132 (173)
.+..|.+|+..+++..|. .++.++++.+++.
T Consensus 21 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~ 51 (143)
T 3j04_B 21 DGFIDKEDLHDMLASMGK---NPTDEYLEGMMSE 51 (143)
T ss_dssp TTCCCHHHHHHHHHHTSC---CCCHHHHHTTTTT
T ss_pred CCCcCHHHHHHHHHHhCC---CCCHHHHHHHHHh
Confidence 467888888888888774 4566666666554
No 149
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=30.32 E-value=1.2e+02 Score=20.17 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.+..|.+|+...++..|. .++.++++.+++.+
T Consensus 22 ~G~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~ 53 (149)
T 2mys_C 22 DAKITASQVGDIARALGQ---NPTNAEINKILGNP 53 (149)
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHh
Confidence 367888888888888764 46778888888776
No 150
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=30.28 E-value=1e+02 Score=27.44 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=45.2
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
..|..|=|+.|+++-..|=.++ .+..|.+|+.+.++..|+ .++.++|++|++.+=-|
T Consensus 294 E~Lt~EEI~ELREaF~~fDkDg----------------dG~IS~eELk~aLrsLG~---~~TeeEI~~Lf~~~D~D 350 (440)
T 3u0k_A 294 DQLTEEQIAEFKEAFSLFDKDG----------------DGTITTKELGTVMRSLGQ---NPTEAELQDMINEVDAD 350 (440)
T ss_dssp BCCCHHHHHHHHHHHHHHCTTC----------------SSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHHCSS
T ss_pred hhhhHHHHHHHHHHHHHHcCCC----------------CCEECHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCC
Confidence 4788899999998765553332 367999999999999884 68999999999887544
No 151
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=30.19 E-value=79 Score=21.23 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHH-hCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITD-LGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~-~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+.++++. .| ..++.++++.+++.+--
T Consensus 102 ~G~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~~d~ 136 (153)
T 3ox6_A 102 DGEISTSELREAMRALLG---HQVGHRDIEEIIRDVDL 136 (153)
T ss_dssp SSSBCHHHHHHHHHHHHS---SCCCHHHHHHHHHHHCS
T ss_pred CCcCcHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCC
Confidence 478999999999998 66 45899999999998743
No 152
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=30.17 E-value=83 Score=21.68 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.6
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++..+
T Consensus 62 ~~~~~~vs~~l~~L~~~Glv~r~~~ 86 (143)
T 3oop_A 62 KKDTPTVNRIVDVLLRKELIVREIS 86 (143)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred CCCHhhHHHHHHHHHHCCCeeccCC
Confidence 4688899999999999999999764
No 153
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=30.00 E-value=40 Score=19.78 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.+..|.+|+..+++..| ..++.++++.+++.+=-|
T Consensus 14 ~G~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~D~~ 48 (66)
T 3li6_A 14 DGAVSYEEVKAFVSKKR---AIKNEQLLQLIFKSIDAD 48 (66)
T ss_dssp SSSCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTT
T ss_pred CCcccHHHHHHHHHHcc---CCCcHHHHHHHHHHHCCC
Confidence 47899999999999875 457888999998876433
No 154
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=29.95 E-value=1.2e+02 Score=21.63 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=19.5
Q ss_pred cccccHHHHHHHHHHHHHHHhhh
Q psy521 60 DQDFEVEFVDVLNQQCYRFLQLK 82 (173)
Q Consensus 60 D~elD~eFI~~L~~~~~~~l~~k 82 (173)
...+..+.++.|.+++..|+..-
T Consensus 22 ~~rIS~~a~~~l~e~l~~f~~~v 44 (111)
T 3b0c_T 22 KTPVTRDAYKIVEKCSERYFKQI 44 (111)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999998873
No 155
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=29.87 E-value=54 Score=21.37 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.++.+.+|+...++..|. .++.++++.+++.+-
T Consensus 38 ~G~i~~~el~~~l~~~g~---~~~~~e~~~l~~~~d 70 (105)
T 1wlz_A 38 TNTISREEFRAICNRRVQ---ILTDEQFDRLWNEMP 70 (105)
T ss_dssp SSCBCHHHHHHHHHHHTC---CCCHHHHHHHHTTSC
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHcC
Confidence 478999999999999873 589999999987653
No 156
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=29.69 E-value=1.1e+02 Score=23.94 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec-CCC---CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN-IDG---TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~-~~g---~~~YR~~~ 155 (173)
.+--||.+.|.+..---..++...|-..|+.|+-+|.|+.... .+| ...|+.+.
T Consensus 50 ~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~ 107 (204)
T 3l9f_A 50 RSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITE 107 (204)
T ss_dssp EEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECH
T ss_pred CCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEECh
Confidence 5788999999876333457899999999999999999997643 223 36798874
No 157
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=29.37 E-value=47 Score=28.77 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.-+.++.|.+-|++.+-....|+++|+.+|...|
T Consensus 123 ~~~n~~~i~~kl~efN~~~~~ls~~el~~l~~~l 156 (362)
T 3l3f_X 123 ENYNPDTIFNGIVKINSNEKTFDDEILAQIGGAL 156 (362)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcccccCCCHHHHHHHHHHH
Confidence 3467999999999877555689999999887766
No 158
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=29.35 E-value=90 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.3
Q ss_pred ccccHHHHHHHHHHHHHHHhh
Q psy521 61 QDFEVEFVDVLNQQCYRFLQL 81 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~ 81 (173)
.++..++|..|.+.+++|+..
T Consensus 38 ~~vs~~~i~aL~E~~~~~~~~ 58 (107)
T 3b0b_B 38 VLFSKQTVAAISEITFRQCEN 58 (107)
T ss_dssp CEECHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHH
Confidence 568889999999999999876
No 159
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=29.24 E-value=66 Score=22.40 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.++.|.+|+..++...| ..++.++++.+++.+=
T Consensus 109 ~G~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~D 141 (166)
T 2mys_B 109 KGSIKKSFLEELLTTGG---GRFTPEEIKNMWAAFP 141 (166)
T ss_pred CcceeHHHHHHHHHHcC---CCCCHHHHHHHHHhcC
Confidence 47899999999999876 3589999999998763
No 160
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.07 E-value=1.5e+02 Score=24.67 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHH---HHHHHHhCCc-eeec----CHHHHHHHHHHHcc
Q psy521 64 EVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEV---RKFITDLGIS-KVEL----SEEDIRTILETLLF 135 (173)
Q Consensus 64 D~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI---~~~I~~~~is-~v~L----s~~dI~~iL~~Lv~ 135 (173)
|..|+....+.+..||..+.++ .|+.......||..++ .+||=+. |. +..+ =++||-.+|+.|=|
T Consensus 10 Dk~~q~~~~~~i~~fL~~~~~~------~~is~k~L~~Pt~KdF~~if~fL~~~-idp~~~~~~~k~eeev~~~lK~L~Y 82 (315)
T 2ve7_A 10 DKAFIQQCIRQLCEFLTENGYA------HNVSMKSLQAPSVKDFLKIFTFLYGF-LCPSYELPDTKFEEEVPRIFKDLGY 82 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCS------SCCCTGGGSSCCHHHHHHHHHHHHTT-TSTTCCCCSSCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhcCCC------CCCCcccCCCCCHHHHHHHHHHHHHh-cCCCCccCCCChHHHHHHHHHHcCC
Confidence 7889999999999999987543 2333333455777664 4555442 22 2233 27889999999998
Q ss_pred cCeeE
Q psy521 136 DGKIE 140 (173)
Q Consensus 136 Dg~iE 140 (173)
=..|-
T Consensus 83 P~~is 87 (315)
T 2ve7_A 83 PFALS 87 (315)
T ss_dssp SSCCC
T ss_pred CceeC
Confidence 88643
No 161
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=29.04 E-value=31 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=38.5
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
++|=-|+=-.|-++|...... +.+..+++|++..+++. -.+|.+||..=++.|-
T Consensus 89 gdfy~eLavqIvEvC~~tr~~----------------nGGli~l~el~~~~~r~----~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 89 NDFYYEVCLKVIEICRQTKDM----------------NGGVISFQELEKVHFRK----LNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----------------SSSCEEHHHHHHTTTTT----TTCCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHh----------------cCCeeEHHHHHHHHHhh----cCCCHHHHHHHHHHhh
Confidence 555555555555555544433 24789999999999886 5789999998888774
No 162
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=29.02 E-value=69 Score=21.16 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+...++..| ..++.++++.+++.+-.|
T Consensus 46 ~G~I~~~el~~~l~~~g---~~~~~~~~~~l~~~~D~d 80 (107)
T 2d58_A 46 NGDIDIMSLKRMLEKLG---VPKTHLELKKLIGEVSSG 80 (107)
T ss_dssp TSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHCSS
T ss_pred CCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 47899999999999987 458999999999887443
No 163
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=28.95 E-value=71 Score=21.89 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+..+++..|. .++.++++.+++.+=-
T Consensus 105 ~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~D~ 138 (158)
T 2jnf_A 105 NGYISTDVMREILAELDE---TLSSEDLDAMIDEIDA 138 (158)
T ss_dssp SSSEEHHHHHHHHHHHCT---TCCHHHHHHHHHHHCS
T ss_pred CCeEcHHHHHHHHHHhCC---cCCHHHHHHHHHHhCC
Confidence 478999999999998874 5899999999998743
No 164
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=28.69 E-value=1.2e+02 Score=22.16 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHH
Q psy521 68 VDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILET 132 (173)
Q Consensus 68 I~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~ 132 (173)
.+.+...+++||.+.... ..-|.+.|.+|++.. ....|+..++-+|++.
T Consensus 52 l~ti~~e~l~YL~~~p~~--------------~~q~~e~i~~l~~~L--~~~~Ltk~E~LqivNl 100 (136)
T 3ayh_A 52 LRTIQFEILKYLSSQGNC--------------EGLTKERFLDCIAIF--NEFELTKAEILVILNN 100 (136)
T ss_dssp HHHHHHHHHHHHHTTTCC--------------TTCCHHHHHHHHHTT--TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc--------------cccCHHHHHHHHHHH--HhcCCCHHHHHHHhcc
Confidence 344456678888874211 123688888888764 3567888888887764
No 165
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=28.65 E-value=89 Score=21.90 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHhCCc--eeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGIS--KVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is--~v~Ls~~dI~~iL~~Lv~D 136 (173)
.+..|.+|+...++..|+. ...++.++++.+++.+=-|
T Consensus 15 ~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~ 54 (167)
T 1gjy_A 15 DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD 54 (167)
T ss_dssp TSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTT
T ss_pred CCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCC
Confidence 4678899999999888862 3367888888888776433
No 166
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=28.61 E-value=39 Score=21.18 Aligned_cols=18 Identities=11% Similarity=0.551 Sum_probs=14.6
Q ss_pred cccccHHHHHHHHHHHHH
Q psy521 60 DQDFEVEFVDVLNQQCYR 77 (173)
Q Consensus 60 D~elD~eFI~~L~~~~~~ 77 (173)
+-.+|.+||+.|.+-|.+
T Consensus 20 el~L~~dFI~LL~~Ei~R 37 (48)
T 3fyr_A 20 EMNLNRDFIELIENEIKR 37 (48)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 467999999999887653
No 167
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=28.55 E-value=91 Score=21.26 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
.|+.||++.+ .++..-|-.+|+.|+-.|.|++..+......|...
T Consensus 42 ~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 42 LTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp EEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEE
T ss_pred CCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEee
Confidence 5666666654 36788899999999999999997632222345443
No 168
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=28.24 E-value=67 Score=23.15 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=9.8
Q ss_pred CceeecCHHHHHHHHHHHc
Q psy521 116 ISKVELSEEDIRTILETLL 134 (173)
Q Consensus 116 is~v~Ls~~dI~~iL~~Lv 134 (173)
+++..=+.+||.++...|.
T Consensus 69 vt~~~Ps~eDI~RV~arLa 87 (103)
T 2kvc_A 69 FTDELPSPEDVERVRARLA 87 (103)
T ss_dssp CCSSCSCHHHHHHHHHHHG
T ss_pred HhccCCCHHHHHHHHHHHH
Confidence 3444455555555555554
No 169
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=28.23 E-value=1.4e+02 Score=21.19 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEe
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
.+...++..|++. +..|..||++.+ .+|..-|...|+.|.-.|.|++..
T Consensus 5 ~~d~~il~~L~~~-----------------~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 5 QIDLNIIEELKKD-----------------SRLSMRELGRKI--------KLSPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHHHC-----------------SCCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHc-----------------CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEe
Confidence 3445677777653 347899998876 368889999999999999999764
No 170
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=27.82 E-value=1.3e+02 Score=21.94 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHHHHHhhh
Q psy521 62 DFEVEFVDVLNQQCYRFLQLK 82 (173)
Q Consensus 62 elD~eFI~~L~~~~~~~l~~k 82 (173)
++..+||..|.+.+++|+.+-
T Consensus 47 ~vS~~ai~aL~El~~~~~~~i 67 (113)
T 4dra_A 47 QFSKQTIAAISELTFRQCENF 67 (113)
T ss_dssp CBCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999873
No 171
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=27.78 E-value=62 Score=25.16 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~ 153 (173)
..|..+|++- . .||-..++-+|.+|.-||.|+++.. |...|=+
T Consensus 24 ~~~t~~Iak~---L-----GlShg~aq~~Ly~LeREG~V~~Vk~--GK~ayw~ 66 (165)
T 2vxz_A 24 CKTTSLIQQR---L-----GLSHGRAKALIYVLEKEGRVTRVAF--GNVALVC 66 (165)
T ss_dssp CEEHHHHHHH---H-----TCCHHHHHHHHHHHHHTTSCEEEEE--TTEEEEE
T ss_pred CccHHHHHHH---h-----CCcHHHHHHHHHHHHhcCceEEEEE--ccEEEEE
Confidence 3556666543 2 4788999999999999999999973 5544543
No 172
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=27.75 E-value=41 Score=23.33 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+.++++..| ..++.++++.+++..
T Consensus 99 ~G~I~~~El~~~l~~~g---~~~~~~~~~~~~~~~ 130 (159)
T 2ovk_C 99 QGLISSAEIRNVLKMLG---ERITEDQCNDIFTFC 130 (159)
T ss_dssp SSEECHHHHHHHHHHSS---SCCCHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHh
Confidence 47899999999999987 468999999999844
No 173
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=27.60 E-value=29 Score=23.80 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
.++.|.+|+..+++..|. .++.++++.+++.+-
T Consensus 101 ~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~d 133 (151)
T 1w7j_B 101 NGKVMGAELRHVLTTLGE---KMTEEEVETVLAGHE 133 (151)
T ss_dssp SSEEEHHHHHHHHHHSSS---CCCHHHHHHHHTTCC
T ss_pred CCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHhcc
Confidence 478999999999999874 589999999988653
No 174
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=27.52 E-value=1.4e+02 Score=22.60 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.9
Q ss_pred ccccHHHHHHHHHHHHHHHhhh
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLK 82 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k 82 (173)
-.+..+||..|.+.++.|+.+-
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~i 59 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENF 59 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999874
No 175
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=27.50 E-value=1.5e+02 Score=20.17 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
+..|.+|+...++..|. .++.++++.+++.+=
T Consensus 25 G~i~~~el~~~l~~~g~---~~~~~~~~~l~~~~d 56 (148)
T 1exr_A 25 GTITTKELGTVMRSLGQ---NPTEAELQDMINEVD 56 (148)
T ss_dssp SEECHHHHHHHHHHHTC---CCCHHHHHHHHHHHC
T ss_pred CcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHHC
Confidence 56888888888888774 457777877777653
No 176
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=27.35 E-value=1.5e+02 Score=20.31 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 57 ~t~~ela~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 57 LTVGELSNKM--------YLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp BCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHH--------CCCchhHHHHHHHHHHCCCeeecCC
Confidence 4555555443 4688899999999999999999764
No 177
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=27.34 E-value=1.4e+02 Score=24.51 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=23.5
Q ss_pred ccccce---ecccccHHHHHHHHHHHHHHHhh
Q psy521 53 TGGTWY---QDQDFEVEFVDVLNQQCYRFLQL 81 (173)
Q Consensus 53 TGG~WY---tD~elD~eFI~~L~~~~~~~l~~ 81 (173)
+-+.|| .-...+.|.|+.|.+.+.+.+++
T Consensus 238 ~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~ 269 (314)
T 2dvz_A 238 NQPVWYGLLAPKGTPMDVVNKLRDAAVVALKD 269 (314)
T ss_dssp CCCEEEEEEEETTCCHHHHHHHHHHHHHHHTC
T ss_pred EEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcC
Confidence 335676 56788999999999999988775
No 178
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=27.26 E-value=1.4e+02 Score=21.11 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEe
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
.....++..|+.. +..|..||++.+ .+|..-|...|+.|+-.|.|++..
T Consensus 7 ~~~~~iL~~L~~~-----------------~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 7 DIDRILVRELAAD-----------------GRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHHHC-----------------TTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHc-----------------CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3455667777653 347899998876 368889999999999999998875
No 179
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=27.23 E-value=96 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.7
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++...
T Consensus 72 ~~s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 72 YLDSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred CCCcccHHHHHHHHHHCCCEeecCC
Confidence 3788899999999999999999754
No 180
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=27.20 E-value=71 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILET 132 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~ 132 (173)
.++.|.+|+..+++..|. .++.++++.+++.
T Consensus 99 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~ 129 (149)
T 2mys_C 99 NGTVMGAELRHVLATLGE---KMTEEEVEELMKG 129 (149)
T ss_pred CceEcHHHHHHHHHHhCC---CCCHHHHHHHHhh
Confidence 478999999999998874 6899999999876
No 181
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=26.94 E-value=80 Score=29.02 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccc-cCCCCCHHHHHHHHHHh-CCceeecCHHHHHHHHHHHccc
Q psy521 64 EVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ-RLACATPKEVRKFITDL-GISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 64 D~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~-~~~~~T~~eI~~~I~~~-~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
...|...|..++..|+..-... .... +.+..++.|+...+++. ..-.-.+|.+|+++-++.|.-=
T Consensus 404 ~~~f~~ELA~qI~E~c~~~~~~--------~l~~~nGGmItL~DL~~~~NRa~R~g~elISp~Dll~A~~~le~L 470 (566)
T 1w7p_D 404 KELFLDEIAREIYEFTLSEFKD--------LNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHL 470 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--------SSCSCCCCEEEHHHHHHHHHHHTTTTTCCCCHHHHHHHHTTGGGG
T ss_pred hhHHHHHHHHHHHHHHHhhhcc--------cchhcCcCeEEHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc
Confidence 3567777777777777763210 1112 45789999999999987 4333578999999999888653
No 182
>3tw5_A Transglutaminase elicitor; cysteine protease, convergent evolution, innate immunity, PA associated molecular pattern (PAMP); HET: CXS; 2.95A {Phytophthora sojae}
Probab=26.83 E-value=61 Score=28.30 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=34.9
Q ss_pred cceEEEeeccccCCCC-CCceeeecccccc--cceeEEEeeccCCCcCcccccceec
Q psy521 7 KKKVYMLFDLEPDRSL-TGGTWYQDQDFEA--SKKKVYMLFDLEPDRSLTGGTWYQD 60 (173)
Q Consensus 7 ~~k~y~~~~~~p~~~~-tgg~~~~d~sV~~--~~rk~Yml~~l~Ps~eiTGG~WYtD 60 (173)
.+-+|+-+.+..-.|- +.|...+-+.++. ..+..|+|-+|.-.-+|.||-|+.+
T Consensus 268 ~~ivyv~~~~swivEt~~d~~lv~sg~~~~~t~~~~Y~YlLELD~~g~IIGGEW~~~ 324 (367)
T 3tw5_A 268 KSLVYVKSRLSWIYETYTDGGLVSSGQIDKFTTGQYYYYLLELDDAGEIIGGEWVYG 324 (367)
T ss_dssp CEEEEEEEEEEEECCCCCCSCHHHHTGGGGGEEEEEEEEEEEECTTCBEEEEEECTT
T ss_pred ceEEEEEEEEEEEEEccCCCCcccccccccccccceeEEEEEecCCCCEeceEeecC
Confidence 3456666655444333 3444555556654 3455788888888889999999754
No 183
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=26.81 E-value=1.5e+02 Score=20.45 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+...++..|+ -.++.++++.+++.+=-|
T Consensus 54 ~G~I~~~el~~~l~~~g~--~~~~~~e~~~~~~~~D~d 89 (135)
T 3h4s_E 54 RHLITAESLRRNSGILGI--EGMSKEDAQGMVREGDLD 89 (135)
T ss_dssp TTBBCHHHHHHHGGGGTC--CCCCHHHHHHHHHHHCSS
T ss_pred CCcCCHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCC
Confidence 478999999999998774 257999999999876433
No 184
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=26.69 E-value=1.3e+02 Score=23.51 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
...|-.|+.+.|.+. ..|+..|++.+|+.|.
T Consensus 45 ~~Mtk~eLi~~ia~~----~~lsk~da~~vl~~l~ 75 (204)
T 2iie_A 45 GGLTKAEMSEYLFDK----LGLSKRDAKELVELFF 75 (204)
T ss_dssp SSBCHHHHHHHHHHH----HCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH----cCCCHHHHHHHHHHHH
Confidence 457899999999863 3578888887777654
No 185
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=26.60 E-value=1.6e+02 Score=20.36 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~ 154 (173)
.+|+.+|++.+ .++..-|..+|+.|+-.|.|++.. ++ .|+++
T Consensus 22 ~~~~~ela~~l--------~vs~~tvs~~l~~Le~~Glv~r~~--~~--~~~LT 63 (142)
T 1on2_A 22 YARVSDIAEAL--------AVHPSSVTKMVQKLDKDEYLIYEK--YR--GLVLT 63 (142)
T ss_dssp SCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEET--TT--EEEEC
T ss_pred CCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEee--Cc--eEEEc
Confidence 47899999865 357788899999999999999864 22 46654
No 186
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=26.59 E-value=1.7e+02 Score=24.05 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=23.3
Q ss_pred ccccce---ecccccHHHHHHHHHHHHHHHhh
Q psy521 53 TGGTWY---QDQDFEVEFVDVLNQQCYRFLQL 81 (173)
Q Consensus 53 TGG~WY---tD~elD~eFI~~L~~~~~~~l~~ 81 (173)
+-+.|| .-...+.+.|+.|.+.+.+.+++
T Consensus 234 ~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~ 265 (312)
T 2f5x_A 234 EVGIWHGMWAPKGTPKPVVDKLVKSLQAGLAD 265 (312)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcC
Confidence 335676 46788999999999999988765
No 187
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=26.56 E-value=1.5e+02 Score=19.96 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.0
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++..+
T Consensus 63 ~~~~~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 63 AMDAATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 4688899999999999999999764
No 188
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=26.41 E-value=81 Score=27.08 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH---cccCeeEEEecCCC
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETL---LFDGKIEQINNIDG 147 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L---v~Dg~iE~~~~~~g 147 (173)
..|.+|..+||....-..++++.+-|+++|+.| -..-++.-|...+|
T Consensus 13 ~~~~~~~l~~l~~~~~~~~~~gL~r~~~ll~~lg~p~~~~~vI~VtGTNG 62 (437)
T 3nrs_A 13 TSPLAAWLCYLEHLHSQPIELGLERVKQVAERLDLLKPAPKIFTVAGTNG 62 (437)
T ss_dssp TSCHHHHHHHHHTC-------CCHHHHHHHHHTTCSCSSSEEEEEECSSS
T ss_pred CcCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHcCCccccCCEEEEECCcC
Confidence 468999999999988778899999999999999 33556666655566
No 189
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=26.39 E-value=14 Score=28.02 Aligned_cols=7 Identities=57% Similarity=1.625 Sum_probs=6.6
Q ss_pred cCccCCC
Q psy521 166 SPCGVCP 172 (173)
Q Consensus 166 ~PCG~CP 172 (173)
.|||.||
T Consensus 193 ~~CG~C~ 199 (219)
T 3bl5_A 193 DGCGECP 199 (219)
T ss_dssp SCCSCSH
T ss_pred CCCCCCH
Confidence 8999997
No 190
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.38 E-value=29 Score=31.68 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=45.0
Q ss_pred ecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCe
Q psy521 59 QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGK 138 (173)
Q Consensus 59 tD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~ 138 (173)
.||-+ .+|..|++.+++..-++-.. . .+-.++.+|+..+.-. +.+|+|.|+-.|+.||.
T Consensus 373 ~Dgty--~LI~rLr~~vir~~irkis~-------~-----YsrIsL~dIa~kL~L~-------s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 373 KDDTY--QLCVRLRSNVIKTGIRIISL-------T-----YKKISLRDICLKLNLD-------SEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HTTCT--HHHHHHHHHHHHHHHHHSCC-------C-----SSEECHHHHHHHHHHH-------HSSCHHHHHHHHHHHTS
T ss_pred cCChh--HHHHHHHHHHHHHHHHHHHH-------H-----HhcccHHHHHHHhCCC-------CHHHHHHHHHHHHHcCC
Confidence 45544 57777777777766654211 0 1337899998887521 34789999999999999
Q ss_pred eEEEec
Q psy521 139 IEQINN 144 (173)
Q Consensus 139 iE~~~~ 144 (173)
|+-..+
T Consensus 432 I~A~Id 437 (523)
T 4b4t_S 432 IEAKIN 437 (523)
T ss_dssp SCCEEC
T ss_pred ceEEEe
Confidence 998764
No 191
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=26.38 E-value=1.2e+02 Score=20.87 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=30.1
Q ss_pred eecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecC
Q psy521 119 VELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSP 156 (173)
Q Consensus 119 v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~ 156 (173)
..++..-|-.+|+.|+-+|.|+... ......|+.+..
T Consensus 40 ~~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~iT~~ 76 (99)
T 2co5_A 40 IDISDGVLYPLIDSLIDDKILREEE-APDGKVLFLTEK 76 (99)
T ss_dssp CBCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEECHH
T ss_pred CCCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEEECHH
Confidence 4789999999999999999999875 234567887753
No 192
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=26.36 E-value=40 Score=24.54 Aligned_cols=44 Identities=5% Similarity=-0.068 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCC
Q psy521 103 TPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPY 157 (173)
Q Consensus 103 T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~ 157 (173)
|.++|++.+ .++..-+++||..|.--|.|+.++. .| .|++.+++
T Consensus 25 s~~~IA~~~--------~i~~~~l~kIl~~L~~aGlv~s~rG-~G--Gy~Lar~p 68 (145)
T 1xd7_A 25 SSEIIADSV--------NTNPVVVRRMISLLKKADILTSRAG-VP--GASLKKDP 68 (145)
T ss_dssp CHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEECCSS-SS--SCEESSCG
T ss_pred CHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEeecC-CC--CceecCCH
Confidence 788888753 4688899999999999999998875 55 48888765
No 193
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=26.32 E-value=69 Score=22.30 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+..+++..| ++.++++.+++.+--
T Consensus 108 ~G~i~~~e~~~~l~~~g-----~~~~~~~~~~~~~D~ 139 (174)
T 1q80_A 108 DNNISRDEYGIFFGMLG-----LDKTMAPASFDAIDT 139 (174)
T ss_dssp SSSBCHHHHHHHHHHHT-----CCGGGHHHHHHHHCT
T ss_pred CCcccHHHHHHHHHHcC-----CCHHHHHHHHHHhCC
Confidence 47899999999999986 678889999988743
No 194
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=26.31 E-value=1.5e+02 Score=20.83 Aligned_cols=35 Identities=6% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 65 ~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 99 (159)
T 3s2w_A 65 INQESLSDYL--------KIDKGTTARAIQKLVDEGYVFRQRD 99 (159)
T ss_dssp EEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEecC
Confidence 4555555543 4678899999999999999999864
No 195
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=26.28 E-value=1.1e+02 Score=23.43 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEE
Q psy521 63 FEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ 141 (173)
Q Consensus 63 lD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~ 141 (173)
.-.+..+.|++++..|+..-.. +=.++=...| +.+++.+||...+.+|=||+.+++
T Consensus 23 VS~dA~~~l~~~l~~f~~~i~~---------------------~A~~~a~ha~--RKTv~a~DV~~a~~~lg~~~v~d~ 78 (154)
T 1f1e_A 23 LSQDAKDTIYDFVPTMAEYVAN---------------------AAKSVLDASG--KKTLMEEHLKALADVLMVEGVEDY 78 (154)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHTTT--CSEECHHHHHHHHHHHTCTTSTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHcC--CCcCCHHHHHHHHHhcccccCCcc
Confidence 3345666777777777765321 1122222222 446677777777777777766554
No 196
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=26.17 E-value=69 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+.++++..|. .++.++++.+++.+
T Consensus 117 ~G~I~~~el~~~l~~~g~---~~~~~~~~~l~~~~ 148 (198)
T 1juo_A 117 SGTVDPQELQKALTTMGF---RLSPQAVNSIAKRY 148 (198)
T ss_dssp CSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHh
Confidence 467999999999998874 58999999999988
No 197
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=25.92 E-value=1.6e+02 Score=20.15 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 46 ~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 46 RTQKHIGEKW--------SLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp BCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 5666666554 3678889999999999999998764
No 198
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=25.48 E-value=1.5e+02 Score=20.14 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.+..|.+|+..+++..|. .++.++++.+++.+=.|
T Consensus 28 ~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~D~~ 62 (158)
T 2jnf_A 28 SGRVSTDQIGIILEVLGI---QQTKSTIRQLIDEFDPF 62 (158)
T ss_dssp CSSEEHHHHHHHHHHTTC---SCSHHHHHHHHHHHCTT
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 367899999999998774 46788888888876443
No 199
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=25.19 E-value=1.6e+02 Score=21.20 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEe
Q psy521 71 LNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 71 L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
....++..|++. +..|..||++.+ .+|..-+...|+.|.-.|.|++..
T Consensus 11 ~~~~il~~L~~~-----------------~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 11 TDIKILQVLQEN-----------------GRLTNVELSERV--------ALSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHHC-----------------TTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-----------------CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeeec
Confidence 445667777653 336899998865 368889999999999999999764
No 200
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Probab=25.16 E-value=45 Score=28.36 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
..|++++|.+.|++.||.+|.|=..| +.+|+.|.-
T Consensus 13 nlp~p~~Vv~llks~gi~~VRlY~~D-~~vL~Al~~ 47 (323)
T 3ur8_A 13 NLPSDQDVIKLYNANNIKKMRIYYPH-TNVFNALKG 47 (323)
T ss_dssp SCCCHHHHHHHHHHTTCCEEEESSCC-HHHHHHHTT
T ss_pred CCCCHHHHHHHHHhCCCCeEEecCCC-HHHHHHHHh
Confidence 46899999999999999998774444 678888864
No 201
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.15 E-value=1.4e+02 Score=20.69 Aligned_cols=25 Identities=16% Similarity=0.237 Sum_probs=22.3
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++...
T Consensus 62 ~~s~~tvs~~l~~Le~~glv~r~~~ 86 (155)
T 1s3j_A 62 EVKPSAVTLMADRLEQKNLIARTHN 86 (155)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEeecCC
Confidence 4788899999999999999999864
No 202
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=25.05 E-value=55 Score=22.51 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+..+++..|. .++.++++.+++..
T Consensus 98 ~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~ 129 (156)
T 1wdc_C 98 QGFISGAELRHVLTALGE---RLSDEDVDEIIKLT 129 (156)
T ss_dssp SSEEEHHHHHHHHHHSSS---CCCHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHh
Confidence 478999999999999874 68999999999983
No 203
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=24.96 E-value=36 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
-|++|+...|-+.. ..++++++++||+.+
T Consensus 116 ~t~dEar~lipsl~---~r~sdEeLe~ILd~l 144 (152)
T 2c35_A 116 ETAEESKALIPSLE---GRFEDEELQQILDDI 144 (152)
T ss_dssp SSHHHHHHHCGGGT---TTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhc---cCCCHHHHHHHHHHH
Confidence 56677766666654 247888999988876
No 204
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=24.58 E-value=44 Score=24.48 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
+|..+|..+|.+ +++..=+.+||.++...|.-
T Consensus 59 i~~~dI~~~I~~--vt~~~Ps~eDI~RV~arLaa 90 (112)
T 2lky_A 59 FDHIDIGVLITQ--MTDEMPREEDIERVRRHLAL 90 (112)
T ss_dssp CSCCCSHHHHHH--HTTCCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH--HhccCCCHHHHHHHHHHHHh
Confidence 333444444443 44556678888888888764
No 205
>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.41 E-value=1.8e+02 Score=21.94 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=35.5
Q ss_pred cccceecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhC
Q psy521 54 GGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLG 115 (173)
Q Consensus 54 GG~WYtD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~ 115 (173)
||+|=.-..||.+-|..+.+.+.+....- .-..+.++.+.|+...
T Consensus 1 ~~~~~~~e~L~~~~v~~v~e~~erl~~tl-----------------P~~dp~e~~~~l~~~K 45 (142)
T 2yuf_A 1 GSSGSSGEALDAAAALSVAECVERMAPTL-----------------PKSDLNEVKELLKTNK 45 (142)
T ss_dssp CCCCCCCCCSCHHHHHHHHHHHHHHHHHS-----------------CCCCHHHHHHHHHHCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHhhC-----------------CCCCchHHHHHHHHhH
Confidence 89999989999999999999888877763 1245778887777543
No 206
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=24.40 E-value=1.7e+02 Score=19.78 Aligned_cols=35 Identities=3% Similarity=0.104 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 51 ~~~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 51 VLQRDLESEF--------SIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp CBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCHHHHHHHH--------CCCcchHHHHHHHHHHCCCEEeeCC
Confidence 5666666554 3678889999999999999999864
No 207
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=24.36 E-value=1.1e+02 Score=22.24 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+.++++..|. .++.++++.+++.+--
T Consensus 107 ~G~i~~~e~~~~l~~~g~---~~~~~~~~~~~~~~D~ 140 (191)
T 1y1x_A 107 DGRLDSNEVRAALLSSGY---QVSEQTFQALMRKFDR 140 (191)
T ss_dssp SSCBCHHHHHHHHHTTSC---CCCHHHHHHHHHHHCT
T ss_pred CCeEcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCC
Confidence 478999999999998774 6899999999988754
No 208
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.15 E-value=1.8e+02 Score=20.18 Aligned_cols=25 Identities=8% Similarity=0.250 Sum_probs=22.0
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++...
T Consensus 69 ~is~~tvs~~l~~Le~~Gli~r~~~ 93 (154)
T 2eth_A 69 STTKSNVTNVVDSLEKRGLVVREMD 93 (154)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 4688889999999999999999864
No 209
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=24.09 E-value=1.3e+02 Score=21.30 Aligned_cols=35 Identities=6% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+...++..|. .++.++++.+++.+-.|
T Consensus 64 ~G~I~~~el~~~l~~~g~---~~~~~e~~~l~~~~D~d 98 (150)
T 2jjz_A 64 EGEIDLMSLKRMMEKLGV---PKTHLEMKKMISEVTGG 98 (150)
T ss_dssp TSSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTT
T ss_pred cCcCCHHHHHHHHHHcCC---CCCHHHHHHHHHHHCCC
Confidence 478999999999999873 58899999999877543
No 210
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=24.05 E-value=1.7e+02 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=22.0
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++...
T Consensus 77 ~is~~tvs~~l~~Le~~Gli~r~~~ 101 (162)
T 3cjn_A 77 VVEQSTLSRALDGLQADGLVRREVD 101 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCChhHHHHHHHHHHHCCCEEecCC
Confidence 4678889999999999999999864
No 211
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=24.01 E-value=1.2e+02 Score=20.72 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 52 ~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 52 LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEeccC
Confidence 5566666554 3678889999999999999998764
No 212
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=23.95 E-value=1.9e+02 Score=20.15 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec--CCC--CeeEEeec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN--IDG--TDMYRAVS 155 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~--~~g--~~~YR~~~ 155 (173)
.+--+|.+.|.+.| -..++..-|-.+|+.|+-+|.|+.... .+| ...|+.+.
T Consensus 23 ~~Gyei~~~l~~~~--~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 78 (115)
T 4esb_A 23 VYGYELSTKLNKHG--FTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITD 78 (115)
T ss_dssp EEHHHHHHHHHHTT--CTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECH
T ss_pred CCHHHHHHHHHHcC--CCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECH
Confidence 46779999999844 236799999999999999999998653 234 25688764
No 213
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=23.87 E-value=1.1e+02 Score=21.70 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.+..|.+|+..+++..| ++.++++.+++.+=-|
T Consensus 123 dG~I~~~E~~~~l~~~g-----~~~~~~~~~~~~~D~d 155 (191)
T 2ccm_A 123 DNIIDKHEYSTVYMSYG-----IPKSDCDAAFDTLSDG 155 (191)
T ss_dssp SSBCCHHHHHHHHHTTT-----CCHHHHHHHHHHHTTT
T ss_pred CCcCcHHHHHHHHHHhC-----CCHHHHHHHHHHhCCC
Confidence 47899999999998876 7889999999887543
No 214
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=23.84 E-value=2.6e+02 Score=21.77 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecC
Q psy521 66 EFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNI 145 (173)
Q Consensus 66 eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~ 145 (173)
.--+.+.+.|.+.|+++ ..-|=+|+.+.|++.|+.-+ |..=|-+=|+-| .+.++++.
T Consensus 29 ~k~~~r~~~I~eiI~~~-----------------~I~TQeEL~~~L~~~Gi~vi--TQATvSRDIkEL----glvKv~~~ 85 (180)
T 3v4g_A 29 EKQDNLVRAFKALLKEE-----------------RFGSQGEIVEALKQEGFENI--NQSKVSRMLTKF----GAVRTRNA 85 (180)
T ss_dssp -CHHHHHHHHHHHHHHT-----------------CCCSHHHHHHHHHHTTCTTC--CHHHHHHHHHHT----TCEEEECT
T ss_pred ccHHHHHHHHHHHHhhC-----------------CcCCHHHHHHHHHHCCCccc--CHHHHHHHHHHc----CCEEeeCC
Confidence 34556777788888875 45799999999999996541 333333334433 67788877
Q ss_pred CCCeeEEee
Q psy521 146 DGTDMYRAV 154 (173)
Q Consensus 146 ~g~~~YR~~ 154 (173)
+|...|...
T Consensus 86 ~G~~~Y~lp 94 (180)
T 3v4g_A 86 KMEMVYCLP 94 (180)
T ss_dssp TSCEEEECC
T ss_pred CCCEEEEeC
Confidence 887666653
No 215
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=23.51 E-value=79 Score=23.94 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccC
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDG 137 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg 137 (173)
.++.|.+|+.+.+++.|. .++.++++.+++.+- |+
T Consensus 131 ~G~I~~~El~~~l~~~g~---~~~~~~~~~l~~~~d-d~ 165 (220)
T 3sjs_A 131 SGTLEPHEILPALQQLGF---YINQRTSLLLHRLFA-RG 165 (220)
T ss_dssp TTEECHHHHHHHHHHHTC---CCCHHHHHHHHHHHC---
T ss_pred CCCCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhc-CC
Confidence 478999999999998884 689999999998875 54
No 216
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=23.50 E-value=1.8e+02 Score=19.78 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.1
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++...
T Consensus 54 ~~s~~~vs~~l~~Le~~gli~r~~~ 78 (144)
T 1lj9_A 54 KVDRTTAARAIKRLEEQGFIYRQED 78 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHhHHHHHHHHHHHCCCEEeecC
Confidence 4688899999999999999999864
No 217
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=23.38 E-value=93 Score=21.80 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+..+++..|. .++.++++.+++.+
T Consensus 86 ~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~ 117 (167)
T 1gjy_A 86 SGTVDPQELQKALTTMGF---RLNPQTVNSIAKRY 117 (167)
T ss_dssp CSEECHHHHHHHHHTTTC---CCCHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHcCC---CCCHHHHHHHHHHh
Confidence 467999999999998774 58999999999987
No 218
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=23.31 E-value=65 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.|.+|+.+.++++| |+.+++++|++..=.|
T Consensus 64 dG~Is~~El~~~l~~~g-----l~~~el~~I~~~~D~d 96 (139)
T 2jq6_A 64 NGKITGANAKKEMVKSK-----LPNTVLGKIWKLADVD 96 (139)
T ss_dssp SSEEEHHHHHHHHHHTT-----CCHHHHHHHHHHHCSS
T ss_pred CCeECHHHHHHHHHHhC-----cCHHHHHHHHHHhCCC
Confidence 37799999999999977 7789999999876543
No 219
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.25 E-value=1.8e+02 Score=19.70 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
..|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 52 ~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~~ 87 (146)
T 2fbh_A 52 SPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLAV 87 (146)
T ss_dssp CCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecCC
Confidence 34555555543 4788899999999999999999764
No 220
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=23.22 E-value=86 Score=21.95 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
..|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 55 ~~~~~eLa~~l--------~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 55 PQTLNSIGRHL--------DLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp SEEHHHHHHHH--------TCCHHHHHHHHHHHHHHTSEEC---
T ss_pred CCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 35566666554 3678889999999999999998764
No 221
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=23.19 E-value=88 Score=22.77 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHhCCc--eeecCHHHHHHHHHHHccc
Q psy521 100 ACATPKEVRKFITDLGIS--KVELSEEDIRTILETLLFD 136 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is--~v~Ls~~dI~~iL~~Lv~D 136 (173)
+..|.+|+.+.++..|+. ...++.++++.+++.+=-|
T Consensus 47 G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d 85 (198)
T 1juo_A 47 GQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD 85 (198)
T ss_dssp TEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTT
T ss_pred CcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCC
Confidence 678999999999998863 3467889999988877444
No 222
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=23.13 E-value=17 Score=33.13 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=0.0
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEee
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRAV 154 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~~ 154 (173)
.||..++..+|+.|+-+|+|++.. .|. ..|+.+
T Consensus 541 ~ls~~qa~~~L~~Lv~~G~l~~~G--~gr~t~Y~~~ 574 (583)
T 3lmm_A 541 GVSRGTAKACVDGLVDEERVVAVG--GGRSRRYRLV 574 (583)
T ss_dssp ------------------------------------
T ss_pred CCCHHHHHHHHHHHHHCCcEEEeC--CCCceEEEEe
Confidence 378889999999999999998863 232 356654
No 223
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=23.04 E-value=71 Score=22.62 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+.++++..| ..++.++++.+++.+--
T Consensus 123 ~G~Is~~El~~~l~~~g---~~~~~~~~~~~~~~~D~ 156 (191)
T 1uhk_A 123 NGAITLDEWKAYTKAAG---IIQSSEDCEETFRVCDI 156 (191)
T ss_dssp SSEECHHHHHHHHHHHT---SCCSHHHHHHHHHHSCC
T ss_pred CCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCC
Confidence 47899999999999987 35899999999988643
No 224
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=22.91 E-value=80 Score=21.93 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+..+++..| ++.++++.+++.+=-
T Consensus 116 ~G~I~~~e~~~~l~~~g-----~~~~~~~~~~~~~D~ 147 (176)
T 1nya_A 116 DGQINADEFAAWLTALG-----MSKAEAAEAFNQVDT 147 (176)
T ss_dssp CSEEEHHHHHHHHHHTT-----CCHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhC-----CCHHHHHHHHHHhCC
Confidence 46799999999999987 899999999998743
No 225
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.79 E-value=38 Score=23.60 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHhCCce
Q psy521 102 ATPKEVRKFITDLGISK 118 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~ 118 (173)
=|+++|.+||...|...
T Consensus 30 Ws~~~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEE 46 (103)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHcCCCh
Confidence 46888888888877653
No 226
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=22.78 E-value=22 Score=20.52 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=8.8
Q ss_pred CccccCccCCC
Q psy521 162 GLSTSPCGVCP 172 (173)
Q Consensus 162 ~~~~~PCG~CP 172 (173)
.|--+||+.|-
T Consensus 10 ~l~~VPCsiC~ 20 (32)
T 1brv_A 10 TLPYVPCSTCE 20 (32)
T ss_pred ccccccccccC
Confidence 46789999993
No 227
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=22.76 E-value=1.6e+02 Score=20.23 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.++..-|-.+|+.|+-.|.|++...
T Consensus 65 ~~~~~~vs~~l~~Le~~Glv~r~~~ 89 (152)
T 3bj6_A 65 QMKRQYISRILQEVQRAGLIERRTN 89 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCeeecCC
Confidence 3678889999999999999999864
No 228
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=22.75 E-value=1.4e+02 Score=20.34 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 48 ~t~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~~~ 82 (139)
T 3eco_A 48 LTQNDIAKAL--------QRTGPTVSNLLRNLERKKLIYRYVD 82 (139)
T ss_dssp EEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCHHHHHHHh--------CCCcccHHHHHHHHHHCCCEeecCC
Confidence 4555555554 3688899999999999999999864
No 229
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=22.62 E-value=1.4e+02 Score=20.77 Aligned_cols=37 Identities=8% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
+..|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 56 ~~~t~~ela~~l--------~i~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 56 DAMMITRLAKLS--------LMEQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp SCBCHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred CCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeccC
Confidence 346777777654 3678889999999999999998753
No 230
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=22.54 E-value=41 Score=21.99 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
.++.|.+|+..+++..+-....++.++++.+++.+=-
T Consensus 55 ~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~ 91 (108)
T 1rro_A 55 SGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN 91 (108)
T ss_dssp SSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCC
Confidence 4679999999999987533456899999999987643
No 231
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=22.30 E-value=1.6e+02 Score=20.04 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
..|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 50 ~~~~~ela~~l--------~~s~~tvs~~l~~Le~~glv~r~~~ 85 (146)
T 2gxg_A 50 PKTMAYLANRY--------FVTQSAITASVDKLEEMGLVVRVRD 85 (146)
T ss_dssp CBCHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CcCHHHHHHHh--------CCCchhHHHHHHHHHHCCCEEeecC
Confidence 35666666543 3678889999999999999999864
No 232
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=22.27 E-value=66 Score=25.51 Aligned_cols=31 Identities=32% Similarity=0.667 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
..-|++|+...|-+... .++.+++++||+.|
T Consensus 150 ~PeTadEaraLIpSle~---rlsdEeLeeILd~L 180 (187)
T 1y14_A 150 ACDTADEAKTLIPSLNN---KISDDELERILKEL 180 (187)
T ss_dssp CCSSHHHHHHHSGGGTT---TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcc---CCCHHHHHHHHHHH
Confidence 34678888888777663 38999999999886
No 233
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=22.14 E-value=47 Score=22.37 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHH
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETL 133 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~L 133 (173)
.++.|.+|+..+++..|. .++.++++.+++.+
T Consensus 90 ~G~i~~~e~~~~l~~~g~---~~~~~~~~~~~~~~ 121 (145)
T 2bl0_B 90 NGTIQEAELRQLLLNLGD---ALTSSEVEELMKEV 121 (145)
T ss_dssp SSEEEHHHHHHHHHHSSS---CCCHHHHHHHHTTC
T ss_pred CCeEcHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 478999999999998873 58999999998765
No 234
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=22.04 E-value=1.2e+02 Score=21.07 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHhCCc--eeecCHHHHHHHHHHHc
Q psy521 100 ACATPKEVRKFITDLGIS--KVELSEEDIRTILETLL 134 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is--~v~Ls~~dI~~iL~~Lv 134 (173)
+..|.+|+...++..|+. ...++.++++.+++.+=
T Consensus 14 G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D 50 (165)
T 1k94_A 14 GEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLD 50 (165)
T ss_dssp TSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhC
Confidence 667888888888887752 23567777877777653
No 235
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.90 E-value=1.8e+02 Score=19.11 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.8
Q ss_pred ccccHHHHHHHHHHHHHHHhhh
Q psy521 61 QDFEVEFVDVLNQQCYRFLQLK 82 (173)
Q Consensus 61 ~elD~eFI~~L~~~~~~~l~~k 82 (173)
.+++..++..|.+..++|..+-
T Consensus 17 ~~~~~~v~~~L~e~~~ry~~~i 38 (68)
T 1taf_A 17 QEYEPRVVNQLLEFTFRYVTSI 38 (68)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999874
No 236
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=21.64 E-value=63 Score=22.62 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCcCcccccceecccccHHHHHHHHHHHHHHHhhh
Q psy521 48 PDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLK 82 (173)
Q Consensus 48 Ps~eiTGG~WYtD~elD~eFI~~L~~~~~~~l~~k 82 (173)
|.+.+.++.-|..+.+|.+||+.=+.....||+.-
T Consensus 58 P~K~~~~~~~~~~~~~~~~~ie~Rr~~Le~yL~~l 92 (117)
T 1kmd_A 58 PEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNEL 92 (117)
T ss_dssp CCCCCSSCSTTCCCTTCHHHHHHHHTTHHHHHHHH
T ss_pred CCCCEecccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444332223557899999999999999999975
No 237
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.58 E-value=2e+02 Score=19.53 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEec
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~ 144 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++..+
T Consensus 48 ~~~~~la~~l--------~~s~~tvs~~l~~L~~~glv~r~~~ 82 (145)
T 2a61_A 48 KRPGELSVLL--------GVAKSTVTGLVKRLEADGYLTRTPD 82 (145)
T ss_dssp BCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHH--------CCCchhHHHHHHHHHHCCCeeecCC
Confidence 4555555544 4688889999999999999999764
No 238
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=21.58 E-value=1.9e+02 Score=19.51 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
+..|.+|+..+++..|. .++.++++.+++.+=-
T Consensus 34 G~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~D~ 66 (161)
T 1dtl_A 34 GSISTKELGKVMRMLGQ---NPTPEELQEMIDEVDE 66 (161)
T ss_dssp GSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHCT
T ss_pred CcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhCC
Confidence 56888888888888763 5677777777776543
No 239
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.53 E-value=1.5e+02 Score=21.02 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEe
Q psy521 70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
.+...++..|+.. +..|..||++.+ .+|..-|...|+.|.-.|.|.+..
T Consensus 9 ~~d~~il~~L~~~-----------------~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 9 RVDMQLVKILSEN-----------------SRLTYRELADIL--------NTTRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHHHC-----------------TTCCHHHHHHHT--------TSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHc-----------------CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3455667777753 347888988754 368888999999999999999764
No 240
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=21.28 E-value=1.7e+02 Score=22.95 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHH--HhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521 101 CATPKEVRKFIT--DLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153 (173)
Q Consensus 101 ~~T~~eI~~~I~--~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~ 153 (173)
..|+.||.+-+= +.......+...++..-|+-|+-+|+|+ . .+|...|++
T Consensus 265 ~~t~~ei~~~~~~~~~~~~~~~~a~~e~~ahL~~L~~~g~v~-~--~~~~~~~~~ 316 (317)
T 2zo4_A 265 PKTAWELSLHLFPQELDPAGRRFAFAETLAHLEYLREEGAVG-R--GGPPYRYFR 316 (317)
T ss_dssp CBCHHHHHHHHCC-------CHHHHHHHHHHHHHHHHTTSEE-E--ETTTTEEEE
T ss_pred CCCHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHCCCEE-e--cCCeEEEEe
Confidence 357888888762 1222233466778889999999999999 3 367666764
No 241
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.24 E-value=1.6e+02 Score=25.05 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=23.4
Q ss_pred ecCHHHHHHHHHHHcccCeeEEEec-CCC
Q psy521 120 ELSEEDIRTILETLLFDGKIEQINN-IDG 147 (173)
Q Consensus 120 ~Ls~~dI~~iL~~Lv~Dg~iE~~~~-~~g 147 (173)
.+++++++..|-.||.||+|.-..+ .+|
T Consensus 358 ~~s~~~~E~~L~~lI~~g~l~akID~~~g 386 (429)
T 4b4t_R 358 GVSVAFLDNDLGKFIPNKQLNCVIDRVNG 386 (429)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCEEEETTTT
T ss_pred CcCHHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 4799999999999999999987654 445
No 242
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=21.14 E-value=1.3e+02 Score=20.77 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEE--Eec-CCCC-eeEEee
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ--INN-IDGT-DMYRAV 154 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~--~~~-~~g~-~~YR~~ 154 (173)
.|..+|++.+ .++..-|-.+|+.|+-.|.|++ ..+ .|+. ..++++
T Consensus 56 ~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT 104 (154)
T 2qww_A 56 ISVADLTKRL--------IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLS 104 (154)
T ss_dssp EEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEEC
T ss_pred CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEEC
Confidence 4555555544 3678889999999999999998 654 3343 234444
No 243
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=20.71 E-value=2.1e+02 Score=19.57 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
+..|.+|+..+++..|+ .++.++++.+++.+=-
T Consensus 43 G~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~ 75 (169)
T 3qrx_A 43 GTIDAKELKVAMRALGF---EPKKEEIKKMISEIDK 75 (169)
T ss_dssp SEECHHHHHHHHHHTSC---CCCHHHHHHHHHHHCS
T ss_pred CcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhcC
Confidence 67899999999998874 5788888888887743
No 244
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=20.70 E-value=1.8e+02 Score=18.73 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHhCCceee-cCHHHHHHHHHHHcccC
Q psy521 100 ACATPKEVRKFITDLGISKVE-LSEEDIRTILETLLFDG 137 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~-Ls~~dI~~iL~~Lv~Dg 137 (173)
++.|.++|.+++... .. |+.++|+.|++.|.-.|
T Consensus 22 G~lTy~EI~d~l~~~----~~~ld~e~id~i~~~L~~~g 56 (72)
T 2k6x_A 22 GYITYEDIDKAFPPD----FEGFDTNLIERIHEELEKHG 56 (72)
T ss_dssp SSCBHHHHHHHCSCS----CSSCCHHHHHHHHHHHHHTC
T ss_pred CCccHHHHHHhCccc----cccCCHHHHHHHHHHHHHCC
Confidence 679999998885431 12 79999999999987655
No 245
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=20.58 E-value=1.2e+02 Score=21.30 Aligned_cols=35 Identities=6% Similarity=0.219 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 99 LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 99 ~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
.++.+.+|+...++..|. .++.++++.+++.+-.|
T Consensus 62 dG~I~~~El~~~l~~~g~---~~~~~~~~~l~~~~D~d 96 (147)
T 1wy9_A 62 NGDIDIMSLKRMLEKLGV---PKTHLELKRLIREVSSG 96 (147)
T ss_dssp TSSEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHCSS
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 478999999999999873 58999999999887544
No 246
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=20.56 E-value=2.1e+02 Score=19.38 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=27.4
Q ss_pred C-CCCHHHHHHHHH-HhCCc--eeecCHHHHHHHHHHHccc
Q psy521 100 A-CATPKEVRKFIT-DLGIS--KVELSEEDIRTILETLLFD 136 (173)
Q Consensus 100 ~-~~T~~eI~~~I~-~~~is--~v~Ls~~dI~~iL~~Lv~D 136 (173)
+ +.|.+|+.+.++ ..|.. ...++.++|+.+++.+=-|
T Consensus 28 G~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d 68 (113)
T 1xk4_C 28 PDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTN 68 (113)
T ss_dssp TTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTT
T ss_pred CCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCC
Confidence 5 799999999998 66632 1127889999999877443
No 247
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=20.55 E-value=2e+02 Score=20.67 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcc
Q psy521 102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLF 135 (173)
Q Consensus 102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~ 135 (173)
+|..+|..+|.+ ++.-.=+.+||+++-..|.-
T Consensus 66 i~~~dI~~~It~--vT~~~P~~eDi~RV~arLaa 97 (107)
T 3ol3_A 66 VTDDDIRNAVHQ--IIEKEPTAEEINQVAARLAS 97 (107)
T ss_dssp BCHHHHHHHHHH--HHSSCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH--HhcCCcCHHHHHHHHHHHHh
Confidence 677777777776 66667788888888777753
No 248
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=20.52 E-value=1.5e+02 Score=17.94 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHh--CCceeecCHHHHHHHHHHH
Q psy521 101 CATPKEVRKFITDL--GISKVELSEEDIRTILETL 133 (173)
Q Consensus 101 ~~T~~eI~~~I~~~--~is~v~Ls~~dI~~iL~~L 133 (173)
.-+.+++.++|++- .-....||++||+.|+.=|
T Consensus 33 ~~~~~~l~~~i~~g~~~Mp~~~ls~~ei~~l~~yl 67 (71)
T 1c75_A 33 NYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWL 67 (71)
T ss_dssp TSCHHHHHHHHHHCBTTBCSCSSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 35789999999762 1112469999999998754
No 249
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=20.43 E-value=1.1e+02 Score=20.28 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521 103 TPKEVRKFITDLGISKVELSEEDIRTILETLL 134 (173)
Q Consensus 103 T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv 134 (173)
|-.|+.+.|.+.. .||..|++.+|+.|.
T Consensus 2 ~k~eli~~ia~~~----~ls~~~~~~~l~~~~ 29 (90)
T 1mul_A 2 NKTQLIDVIAEKA----ELSKTQAKAALESTL 29 (90)
T ss_dssp CHHHHHHHHHHHT----TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence 4567777777532 567778777776653
No 250
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.36 E-value=2e+02 Score=20.39 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEe
Q psy521 71 LNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN 143 (173)
Q Consensus 71 L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~ 143 (173)
+...++..|++. +..|..||++-+ .+|..-|...|+.|.-.|.|.+..
T Consensus 9 ~d~~il~~L~~~-----------------~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 9 LDRGILEALMGN-----------------ARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHHC-----------------TTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-----------------CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcceEE
Confidence 445666677653 347899998865 368899999999999999999754
No 251
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A
Probab=20.19 E-value=62 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
++.+.+|+...++..|. +.++++.+++.+--|
T Consensus 61 G~I~~~El~~~l~~lG~-----t~~ei~~~~~~~D~d 92 (123)
T 2kld_A 61 GKLNFDELRQDLKGKGH-----TDAEIEAIFTKYDQD 92 (123)
T ss_dssp TCEEHHHHHHHTTTCCS-----SHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHhCC-----CHHHHHHHHHHHcCC
Confidence 78999999999998884 899999999987544
No 252
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=20.07 E-value=50 Score=20.34 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHccc
Q psy521 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFD 136 (173)
Q Consensus 100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~D 136 (173)
++.+.+|+...++..|. ..++.++++.+++.+=.|
T Consensus 23 G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~~~D~~ 57 (81)
T 1c7v_A 23 GVIDFDEFKFIMQKVGE--EPLTDAEVEEAMKEADED 57 (81)
T ss_dssp GEECHHHHHHHSSTTTT--CCCCHHHHHHHHHHHCSS
T ss_pred CcCCHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCC
Confidence 67899999999988762 467899999999887543
No 253
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=20.02 E-value=1.7e+02 Score=18.35 Aligned_cols=23 Identities=4% Similarity=-0.184 Sum_probs=19.9
Q ss_pred cccccHHHHHHHHHHHHHHHhhh
Q psy521 60 DQDFEVEFVDVLNQQCYRFLQLK 82 (173)
Q Consensus 60 D~elD~eFI~~L~~~~~~~l~~k 82 (173)
+..+-.+.+..|++.+..||..-
T Consensus 17 ~~ris~~A~~~l~~a~e~fi~~l 39 (68)
T 1b67_A 17 AERVSDDARIALAKVLEEMGEEI 39 (68)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999874
Done!