Your job contains 1 sequence.
>psy521
MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQD
QDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVE
LSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy521
(173 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038951 - symbol:CG5380 species:7227 "Drosophila m... 456 3.5e-43 1
UNIPROTKB|F1MYX7 - symbol:POLR3F "DNA-directed RNA polyme... 413 1.3e-38 1
UNIPROTKB|E1BU41 - symbol:POLR3F "Uncharacterized protein... 412 1.6e-38 1
UNIPROTKB|Q2T9S3 - symbol:POLR3F "DNA-directed RNA polyme... 411 2.1e-38 1
UNIPROTKB|F1SBH4 - symbol:POLR3F "Uncharacterized protein... 411 2.1e-38 1
UNIPROTKB|E2RG78 - symbol:POLR3F "Uncharacterized protein... 410 2.6e-38 1
UNIPROTKB|J9P638 - symbol:POLR3F "Uncharacterized protein... 410 2.6e-38 1
UNIPROTKB|Q9H1D9 - symbol:POLR3F "DNA-directed RNA polyme... 409 3.4e-38 1
ZFIN|ZDB-GENE-040426-972 - symbol:polr3f "polymerase (RNA... 407 5.5e-38 1
MGI|MGI:1924086 - symbol:Polr3f "polymerase (RNA) III (DN... 405 8.9e-38 1
RGD|1306428 - symbol:Polr3f "polymerase (RNA) III (DNA di... 405 8.9e-38 1
WB|WBGene00021112 - symbol:W09C3.4 species:6239 "Caenorha... 225 1.1e-18 1
POMBASE|SPCC290.02 - symbol:rpc34 "DNA-directed RNA polym... 214 1.6e-17 1
UNIPROTKB|F1LW73 - symbol:F1LW73 "Uncharacterized protein... 187 1.1e-14 1
CGD|CAL0000539 - symbol:orf19.5608 species:5476 "Candida ... 179 2.1e-13 1
SGD|S000005286 - symbol:RPC34 "RNA polymerase III subunit... 172 1.1e-12 1
DICTYBASE|DDB_G0272022 - symbol:rpc34 "RNA polymerase III... 141 2.6e-09 1
ASPGD|ASPL0000037589 - symbol:AN9125 species:162425 "Emer... 81 1.8e-05 3
TAIR|locus:2171671 - symbol:AT5G23710 species:3702 "Arabi... 104 0.00060 1
>FB|FBgn0038951 [details] [associations]
symbol:CG5380 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:AE014297 GO:GO:0005634 GO:GO:0022008
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:AY119241 RefSeq:NP_001247237.1 RefSeq:NP_651029.1
UniGene:Dm.13730 UniGene:Dm.38066 ProteinModelPortal:Q9VD25
SMR:Q9VD25 DIP:DIP-17810N IntAct:Q9VD25 MINT:MINT-299125
STRING:Q9VD25 PRIDE:Q9VD25 EnsemblMetazoa:FBtr0084236
EnsemblMetazoa:FBtr0305320 GeneID:42619 KEGG:dme:Dmel_CG5380
UCSC:CG5380-RA FlyBase:FBgn0038951 InParanoid:Q9VD25
OrthoDB:EOG4W3R3R PhylomeDB:Q9VD25 GenomeRNAi:42619 NextBio:829724
Bgee:Q9VD25 GermOnline:CG5380 Uniprot:Q9VD25
Length = 293
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 83/138 (60%), Positives = 106/138 (76%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+ GPL
Sbjct: 132 ASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPL 191
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
++++C T EV+KFI+DLGISKV L+E D+ TIL+T+++DG E++ DG+ +YRAV
Sbjct: 192 AFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAV 251
Query: 155 SPYFAVTGLSTSPCGVCP 172
+ TGL PCG+CP
Sbjct: 252 NAPLPPTGLVQMPCGICP 269
Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 5 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFE 34
ASKKKVYML++LEPD S+TGG WYQDQDFE
Sbjct: 132 ASKKKVYMLYNLEPDLSITGGAWYQDQDFE 161
>UNIPROTKB|F1MYX7 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0045089 "positive regulation of
innate immune response" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 IPI:IPI00699294 UniGene:Bt.27185
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:DAAA02035728 EMBL:DAAA02035725 EMBL:DAAA02035726
EMBL:DAAA02035727 Ensembl:ENSBTAT00000011619 Uniprot:F1MYX7
Length = 316
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 81/148 (54%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 141 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 174
>UNIPROTKB|E1BU41 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AADN02041178
IPI:IPI00578749 RefSeq:NP_001186330.1 UniGene:Gga.5581
Ensembl:ENSGALT00000014238 GeneID:416723 KEGG:gga:416723
NextBio:20820145 Uniprot:E1BU41
Length = 314
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 81/148 (54%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 202 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261
Query: 146 DGT-DMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 262 DGQMKLYRAVSPLIQPTGLVRTPCGLCP 289
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 139 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 172
>UNIPROTKB|Q2T9S3 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045089 "positive regulation of innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0005634 GO:GO:0003677
GO:GO:0045087 GO:GO:0006351 GO:GO:0051607 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 EMBL:BC111292 IPI:IPI00699294
RefSeq:NP_001033237.1 UniGene:Bt.27185 ProteinModelPortal:Q2T9S3
SMR:Q2T9S3 STRING:Q2T9S3 GeneID:529410 KEGG:bta:529410 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817
InParanoid:Q2T9S3 KO:K03025 OrthoDB:EOG4VQ9PP NextBio:20875029
InterPro:IPR016049 PANTHER:PTHR12780 Uniprot:Q2T9S3
Length = 316
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 81/148 (54%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAVSP TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 141 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 174
>UNIPROTKB|F1SBH4 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899
GO:GO:0032728 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OMA:SITGGAW
EMBL:CU914246 RefSeq:XP_003483946.1 Ensembl:ENSSSCT00000007767
GeneID:100738796 KEGG:ssc:100738796 Uniprot:F1SBH4
Length = 316
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 80/148 (54%), Positives = 106/148 (71%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P + TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIISPTGLVRAPCGLCP 291
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 141 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 174
>UNIPROTKB|E2RG78 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 EMBL:AAEX03013766
RefSeq:XP_857138.2 Ensembl:ENSCAFT00000008718 GeneID:477143
KEGG:cfa:477143 NextBio:20852675 Uniprot:E2RG78
Length = 316
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 80/148 (54%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 141 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 174
>UNIPROTKB|J9P638 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AAEX03013766
Ensembl:ENSCAFT00000043193 Uniprot:J9P638
Length = 323
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 80/148 (54%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 151 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 210
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 211 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 270
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 271 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 298
Score = 141 (54.7 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 148 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 181
>UNIPROTKB|Q9H1D9 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=NAS] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=NAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP] [GO:0045089 "positive regulation of
innate immune response" evidence=IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:U93869 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 EMBL:CH471133 GO:GO:0045089 Reactome:REACT_1788
GO:GO:0006359 GO:GO:0005666 GO:GO:0003899 GO:GO:0032728
EMBL:AL121893 GO:GO:0006386 GO:GO:0006385 CTD:10621 eggNOG:COG5111
HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025 OrthoDB:EOG4VQ9PP
InterPro:IPR016049 PANTHER:PTHR12780 OMA:SITGGAW EMBL:AK290892
EMBL:BC012588 IPI:IPI00100245 RefSeq:NP_006457.2 UniGene:Hs.472227
PDB:2DK5 PDB:2YU3 PDBsum:2DK5 PDBsum:2YU3 ProteinModelPortal:Q9H1D9
SMR:Q9H1D9 DIP:DIP-34646N IntAct:Q9H1D9 MINT:MINT-1377146
STRING:Q9H1D9 PhosphoSite:Q9H1D9 DMDM:20139728 PRIDE:Q9H1D9
DNASU:10621 Ensembl:ENST00000377603 GeneID:10621 KEGG:hsa:10621
UCSC:uc002wqv.3 GeneCards:GC20P018457 HGNC:HGNC:15763
neXtProt:NX_Q9H1D9 PharmGKB:PA33520 InParanoid:Q9H1D9
PhylomeDB:Q9H1D9 BindingDB:Q9H1D9 ChEMBL:CHEMBL2143
EvolutionaryTrace:Q9H1D9 GenomeRNAi:10621 NextBio:40356
ArrayExpress:Q9H1D9 Bgee:Q9H1D9 CleanEx:HS_POLR3F
Genevestigator:Q9H1D9 GermOnline:ENSG00000132664 Uniprot:Q9H1D9
Length = 316
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 80/148 (54%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 141 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 174
>ZFIN|ZDB-GENE-040426-972 [details] [associations]
symbol:polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
ZFIN:ZDB-GENE-040426-972 GO:GO:0003677 GO:GO:0006351 GO:GO:0060041
GO:GO:0003899 CTD:10621 HOVERGEN:HBG006817 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:BC051782 IPI:IPI00483706
RefSeq:NP_957481.1 UniGene:Dr.24983 ProteinModelPortal:Q7ZTZ0
SMR:Q7ZTZ0 STRING:Q7ZTZ0 GeneID:394162 KEGG:dre:394162
InParanoid:Q7ZTZ0 NextBio:20815110 ArrayExpress:Q7ZTZ0
Uniprot:Q7ZTZ0
Length = 314
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 80/148 (54%), Positives = 104/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+ LNQQC++FLQ K E ++ P+
Sbjct: 142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFKFLQSKAETARDSKQSPM 201
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
V + + AT EV K+I +LGISKV+LS EDI TIL TL+FDGK+E + ++
Sbjct: 202 VQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSV 261
Query: 146 DGT-DMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YR V+P TGL +PCG+CP
Sbjct: 262 DGQMKLYRGVNPIIQPTGLVKTPCGLCP 289
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 139 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 172
>MGI|MGI:1924086 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0045089 "positive regulation of innate immune response"
evidence=ISO] [GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 MGI:MGI:1924086
GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AK036166
EMBL:AK076538 EMBL:AK144679 EMBL:BC009159 IPI:IPI00122358
RefSeq:NP_084039.2 UniGene:Mm.389351 PDB:2DK8 PDBsum:2DK8
ProteinModelPortal:Q921X6 SMR:Q921X6 STRING:Q921X6
PhosphoSite:Q921X6 PRIDE:Q921X6 Ensembl:ENSMUST00000028914
GeneID:70408 KEGG:mmu:70408 InParanoid:Q921X6
EvolutionaryTrace:Q921X6 NextBio:331553 Bgee:Q921X6
CleanEx:MM_POLR3F Genevestigator:Q921X6
GermOnline:ENSMUSG00000027427 Uniprot:Q921X6
Length = 316
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 79/148 (53%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK+E + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TG+ +PCG+CP
Sbjct: 264 DGHMKLYRAVNPILPPTGVVRAPCGLCP 291
Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 141 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 174
>RGD|1306428 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed) polypeptide
F" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISO] [GO:0045089 "positive regulation of
innate immune response" evidence=ISO] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 RGD:1306428 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:CH474026 CTD:10621 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 IPI:IPI00195213 RefSeq:NP_001101254.1
UniGene:Rn.22329 Ensembl:ENSRNOT00000010468 GeneID:311487
KEGG:rno:311487 UCSC:RGD:1306428 NextBio:663707 Uniprot:D3ZQ56
Length = 371
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 79/148 (53%), Positives = 105/148 (70%)
Query: 35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E + P+
Sbjct: 199 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 258
Query: 95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
+ + + A+ EV K+I +LGISKVELS EDI TIL TL++DGK++ + ++
Sbjct: 259 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVDMTIIAAKEGTVGSV 318
Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
DG +YRAV+P TGL +PCG+CP
Sbjct: 319 DGHMKLYRAVNPILPPTGLVRAPCGLCP 346
Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA 35
S ASKKKVYML++L+PDRS+TGG WY DQDFE+
Sbjct: 196 SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFES 229
>WB|WBGene00021112 [details] [associations]
symbol:W09C3.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0005634 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 eggNOG:COG5111 HOGENOM:HOG000231688 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:FO080504 PIR:T34460
RefSeq:NP_491427.1 ProteinModelPortal:P91529 SMR:P91529
STRING:P91529 PaxDb:P91529 EnsemblMetazoa:W09C3.4 GeneID:172081
KEGG:cel:CELE_W09C3.4 UCSC:W09C3.4 CTD:172081 WormBase:W09C3.4
GeneTree:ENSGT00390000009679 InParanoid:P91529 OMA:SITGGAW
NextBio:873937 Uniprot:P91529
Length = 296
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 50/136 (36%), Positives = 75/136 (55%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
+K Y+LF +EPD SLTGGT+Y DQ + E ++ L C + +R+ + + Q
Sbjct: 139 RKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNIQMQ 198
Query: 98 RLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSP 156
R A P+E+ +FIT+ + V LS ED+ ILE + DG IE+ DG RA P
Sbjct: 199 REASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTIER--RADGK--IRACPP 254
Query: 157 YFAVTGLSTSPCGVCP 172
+++ L + PC +CP
Sbjct: 255 RSSISPLVSVPCAICP 270
>POMBASE|SPCC290.02 [details] [associations]
symbol:rpc34 "DNA-directed RNA polymerase III complex
subunit Rpc34 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISO]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
PomBase:SPCC290.02 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 eggNOG:COG5111 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 OMA:SITGGAW EMBL:DQ156223 PIR:T41266
RefSeq:NP_588398.1 ProteinModelPortal:O94553 STRING:O94553
EnsemblFungi:SPCC290.02.1 GeneID:2538992 KEGG:spo:SPCC290.02
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ NextBio:20800167
Uniprot:O94553
Length = 301
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/139 (33%), Positives = 79/139 (56%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP-LV- 95
+K+YML+DL P LTGG W+ DQ+ +VEF++ L + YR++ K GP LV
Sbjct: 142 RKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVW 201
Query: 96 -AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
+ T ++ ++ I+KV+LS ++ ++++ L++DGK+E+ + DG YRA+
Sbjct: 202 GPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKVEKRS--DGAS-YRAI 258
Query: 155 SPYFA-VTGLSTSPCGVCP 172
+ + SPCG CP
Sbjct: 259 RVNNENIDAFTESPCGNCP 277
>UNIPROTKB|F1LW73 [details] [associations]
symbol:F1LW73 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 IPI:IPI00776972
Ensembl:ENSRNOT00000058847 Uniprot:F1LW73
Length = 123
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 52/117 (44%), Positives = 68/117 (58%)
Query: 62 DFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVEL 121
DFE EFV +LNQQC++FLQ+KRE + A+P EV K+ +LGIS VEL
Sbjct: 1 DFESEFVYMLNQQCFKFLQMKRETES-------------LASPLEVWKYC-ELGISTVEL 46
Query: 122 SEEDIRTILETLLFDGKIEQI------NNIDGTDMYRAVSPYFAVTGLSTSPCGVCP 172
S EDI TI +TL++DGK+E I + D + PY TGL +PCG+ P
Sbjct: 47 SLEDIETISDTLIYDGKVEIILIAMKYGTVGSVD--GPMKPYR--TGLVQAPCGLFP 99
>CGD|CAL0000539 [details] [associations]
symbol:orf19.5608 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 CGD:CAL0000539 GO:GO:0003677 GO:GO:0006351
EMBL:AACQ01000034 EMBL:AACQ01000033 GO:GO:0003899 eggNOG:COG5111
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_719169.1
RefSeq:XP_719283.1 ProteinModelPortal:Q5ABU2 STRING:Q5ABU2
GeneID:3639054 GeneID:3639178 KEGG:cal:CaO19.13051
KEGG:cal:CaO19.5608 Uniprot:Q5ABU2
Length = 330
Score = 179 (68.1 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 37/125 (29%), Positives = 71/125 (56%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL-----QLKREKTANNTNG 92
+K+YML++L+P +TGG W+ D + + EF++ L + C+RF+ +K E+ N
Sbjct: 140 RKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIVGKTMYIKDEEADNEDIN 199
Query: 93 PLVA---QRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN-NIDGT 148
PL ++ +FI + I+ VEL DIR++ + L++D +IE++ N + +
Sbjct: 200 PLQTTYHNHHPGVNLDQLVEFINNSNITSVELGINDIRSLCDVLIYDDRIEEVGGNQENS 259
Query: 149 DMYRA 153
+++A
Sbjct: 260 GIFKA 264
>SGD|S000005286 [details] [associations]
symbol:RPC34 "RNA polymerase III subunit C34" species:4932
"Saccharomyces cerevisiae" [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IPI] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 SGD:S000005286 GO:GO:0005739 GO:GO:0003677
EMBL:BK006947 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:X77395
EMBL:X63746 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
Reactome:REACT_87991 GO:GO:0042797 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ EMBL:Z71618 PIR:A45107
RefSeq:NP_014400.1 ProteinModelPortal:P32910 SMR:P32910
DIP:DIP-202N IntAct:P32910 MINT:MINT-567632 STRING:P32910
PaxDb:P32910 PeptideAtlas:P32910 EnsemblFungi:YNR003C GeneID:855737
KEGG:sce:YNR003C CYGD:YNR003c OMA:WFTDSEL NextBio:980127
Genevestigator:P32910 GermOnline:YNR003C Uniprot:P32910
Length = 317
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/122 (31%), Positives = 69/122 (56%)
Query: 38 KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTA--NNTNGP-- 93
+K+YML+ L+P +TGG W+ D + ++EF++ L +RF+ N NGP
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGPKK 204
Query: 94 --LVAQRLA-CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
A + +T +E+ +FIT ++ VEL+ +IR++ E L++D K+E++ + D
Sbjct: 205 NVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH----DC 260
Query: 151 YR 152
YR
Sbjct: 261 YR 262
>DICTYBASE|DDB_G0272022 [details] [associations]
symbol:rpc34 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
dictyBase:DDB_G0272022 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000007 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
OMA:SITGGAW RefSeq:XP_645385.1 ProteinModelPortal:Q86JM3
STRING:Q86JM3 PRIDE:Q86JM3 EnsemblProtists:DDB0216315
GeneID:8618274 KEGG:ddi:DDB_G0272022 ProtClustDB:CLSZ2729252
Uniprot:Q86JM3
Length = 293
Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 38/150 (25%), Positives = 71/150 (47%)
Query: 31 QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
+ ++ +KKVYML+++EP R +TGG Y DQ ++ +++ ++ F+ +N
Sbjct: 127 KSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFV--------DNK 178
Query: 91 NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
+A + +RK + + S+ L EDI+ ++ T+++DG IE++ + M
Sbjct: 179 GAVDLADIITY-----LRK-VAEEATSQ-SLGPEDIQALVNTVIYDGDIEEMRDTRMGAM 231
Query: 151 --------YRAVSPYFAVTGLSTSPCGVCP 172
Y+ V PCG CP
Sbjct: 232 LGRRSGILYKPTKTPIPVNNFCNMPCGNCP 261
>ASPGD|ASPL0000037589 [details] [associations]
symbol:AN9125 species:162425 "Emericella nidulans"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
EMBL:BN001306 GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000169
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ RefSeq:XP_682394.1
ProteinModelPortal:Q5ARF5 STRING:Q5ARF5
EnsemblFungi:CADANIAT00009485 GeneID:2868020 KEGG:ani:AN9125.2
OMA:IDECSPE Uniprot:Q5ARF5
Length = 359
Score = 81 (33.6 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 20 RSLTGGTWYQD-QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLN 72
+SL G + + + + +K+YML L P +TGG W+ D + F+ V++
Sbjct: 130 KSLEGKNYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFIGVVS 183
Score = 70 (29.7 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 111 ITDLGISKVELSEEDIRTILETLLFDGKIEQINN 144
+ GI+ V L EE + +LE L +D K+ +NN
Sbjct: 249 VNQSGITPVRLGEESVTQLLEMLCYDNKLVALNN 282
Score = 68 (29.0 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 8 KKVYMLFDLEPDRSLTGGTWYQD 30
+K+YML L P +TGG W+ D
Sbjct: 149 RKMYMLAGLAPSEDVTGGAWFTD 171
Score = 41 (19.5 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 162 GLSTSPCGVCP 172
G++ PCG CP
Sbjct: 318 GMTEVPCGNCP 328
>TAIR|locus:2171671 [details] [associations]
symbol:AT5G23710 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0006351 EMBL:AB025633
GO:GO:0003899 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
EMBL:BT010606 IPI:IPI00518437 RefSeq:NP_197760.1 UniGene:At.30994
ProteinModelPortal:Q9LSZ5 STRING:Q9LSZ5 PRIDE:Q9LSZ5
EnsemblPlants:AT5G23710.1 GeneID:832436 KEGG:ath:AT5G23710
TAIR:At5g23710 InParanoid:Q9LSZ5 OMA:FASTRIG PhylomeDB:Q9LSZ5
ProtClustDB:CLSN2686296 Genevestigator:Q9LSZ5 Uniprot:Q9LSZ5
Length = 230
Score = 104 (41.7 bits), Expect = 0.00060, P = 0.00060
Identities = 36/144 (25%), Positives = 63/144 (43%)
Query: 39 KVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQR 98
K Y+ + EP LTGG WY D ++ ++ L +C L+ R++ +V
Sbjct: 77 KHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQR--------VVTLE 128
Query: 99 LACATPKEVRKFITDLGISKVELSEEDIRT-ILETLLFDGKIEQINNIDGTDM----YRA 153
+ C F+ + +S V+ ++E ++ IL+ L+ + K +N T + YR
Sbjct: 129 VLCGY------FVKEEKLS-VDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVCYRL 181
Query: 154 VSPYFA-----VTGLSTSPCGVCP 172
F ++ PCGVCP
Sbjct: 182 TGKKFGNGEPRAGAFASIPCGVCP 205
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 173 173 0.00097 108 3 11 22 0.42 32
31 0.48 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 574 (61 KB)
Total size of DFA: 145 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.54u 0.11s 16.65t Elapsed: 00:00:01
Total cpu time: 16.55u 0.11s 16.66t Elapsed: 00:00:01
Start: Thu Aug 15 16:04:27 2013 End: Thu Aug 15 16:04:28 2013