RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy521
         (173 letters)



>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
          RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 26.2 bits (58), Expect = 0.86
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 32 DFEASKKKVYMLFDL 46
             ASKKKVYML++L
Sbjct: 64 SVAASKKKVYMLYNL 78



 Score = 25.1 bits (55), Expect = 2.3
 Identities = 10/12 (83%), Positives = 12/12 (100%)

Query: 5  ASKKKVYMLFDL 16
          ASKKKVYML++L
Sbjct: 67 ASKKKVYMLYNL 78


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 24.5 bits (53), Expect = 4.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 103 TPKEVRKFITDLGISKVELSEEDIR 127
           TP +V K   D  +  V++   D+ 
Sbjct: 1   TPDDVFKLAKDEKVEYVDVRFCDLP 25


>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 23.6 bits (51), Expect = 8.6
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 104 PKEVRKFITDLGISKVELSEEDIRT-ILETLLFDGKIEQINN 144
             ++R   +  GIS+ +L++ +    I + +   G +E +  
Sbjct: 23  DPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQ 64


>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 305

 Score = 24.4 bits (52), Expect = 9.2
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 103 TPKEVRKFITDLGISKVELSEEDIRTILETL-LFDGKIEQIN 143
            P+ +R ++  +G S  +    +I T+ E +  F    E+++
Sbjct: 262 LPEALRNYLCLMGFSMPD--GREIFTLEEFIQAFT--WERVS 299


>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
           {Sulfur-oxidizing endosymbiont of Riftia pachyptila
           [TaxId: 35843]}
          Length = 223

 Score = 24.1 bits (51), Expect = 9.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 101 CATPKEVRKFITDLGISKV 119
             T  E+R  I + G SKV
Sbjct: 4   FRTAVEIRNEIKEHGWSKV 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 655,118
Number of extensions: 29242
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)