BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy522
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 105/131 (80%), Positives = 118/131 (90%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F+VA E+APSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFD RGDVKVIM
Sbjct: 267 IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIM 326
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATN+IETLDPALIRPGRIDRKI F PD TK++I IHTS+M L+EDVNL+ L+ KDD
Sbjct: 327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDD 386
Query: 121 LSGADIKAICT 131
LSGADI+A+CT
Sbjct: 387 LSGADIQAMCT 397
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 169 bits (427), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 102/129 (79%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F +A+E AP+I+FIDE+DA+GTKR+DS G+RE+QRTMLELLNQLDGF S VKV+ A
Sbjct: 267 FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA 326
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR++ LDPAL+R GR+DRKIEFPLP E ++ +I IH+ +MT +D+N QEL + D+
Sbjct: 327 TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386
Query: 122 SGADIKAIC 130
+GA +KA+
Sbjct: 387 NGAQLKAVT 395
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 168 bits (426), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 104/131 (79%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F++A+E APSI+FIDEIDA+ KR D+ +GG+RE+QRT+++LL ++DGFD+RGDVK+I
Sbjct: 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 161
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPA++RPGR DR IE P PDEK + I IHT +M LAEDVNL+E+ +
Sbjct: 162 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEG 221
Query: 121 LSGADIKAICT 131
GA++KAICT
Sbjct: 222 CVGAELKAICT 232
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 164 bits (415), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 100/131 (76%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF +A EHAPSI+F+DEID++G+ R + + GG+ E+QRTMLELLNQLDGF++ ++K+IM
Sbjct: 233 LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM 292
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR++ LDPAL+RPGRIDRKIEFP P + I IH+ +M L +NL+++ +
Sbjct: 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNG 352
Query: 121 LSGADIKAICT 131
SGAD+K +CT
Sbjct: 353 CSGADVKGVCT 363
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+FR+A E+APSI+FIDE+D++ TKR+D+ +G +RE+QR ++ELL Q+DGFD +VKVIM
Sbjct: 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316
Query: 61 ATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
ATNR +TLDPAL+RPGR+DRKIEFP L D + +R IF S+M+LA + +L LI+ D
Sbjct: 317 ATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRND 376
Query: 120 DLSGADIKAIC 130
LSGA I AI
Sbjct: 377 SLSGAVIAAIM 387
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 148 bits (373), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 94/131 (71%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A+EH P I+F+DE+DA+G +R+ + +REIQRT++ELL Q+DGFD+ G K+IM
Sbjct: 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR +TLDPAL+RPGR+DRK+E PLP+E + IF IHT+++ + + + + D
Sbjct: 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDG 385
Query: 121 LSGADIKAICT 131
+GADI+ T
Sbjct: 386 FNGADIRNCAT 396
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 93/131 (70%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF +A I+F DEIDAVG R+D +GG+ E+QRTMLEL+ QLDGFD RG++KV+
Sbjct: 294 LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 353
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR TLDPAL+RPGRIDRK+EF LPD + + IF IH+ M++ + + + +
Sbjct: 354 ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPN 413
Query: 121 LSGADIKAICT 131
+GA+++++CT
Sbjct: 414 STGAELRSVCT 424
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 83/131 (63%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG R GG E ++T+ +LL ++DGFDS+ + V+
Sbjct: 100 LFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMA 159
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR D+KI PD +++I IHT LAEDVNL+ +
Sbjct: 160 ATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPG 219
Query: 121 LSGADIKAICT 131
GAD++ +
Sbjct: 220 FVGADLENLVN 230
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 83/131 (63%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG R GG E ++T+ +LL ++DGFDS+ + V+
Sbjct: 100 LFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMA 159
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR D+KI PD +++I IHT LAEDVNL+ +
Sbjct: 160 ATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPG 219
Query: 121 LSGADIKAICT 131
GAD++ +
Sbjct: 220 FVGADLENLVN 230
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 77/125 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG KR GG E ++T+ +LL ++DGF+ + V+
Sbjct: 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 243
Query: 121 LSGAD 125
GAD
Sbjct: 244 FVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 77/125 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG KR GG E ++T+ +LL ++DGF+ + V+
Sbjct: 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 159
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 219
Query: 121 LSGAD 125
GAD
Sbjct: 220 FVGAD 224
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 77/125 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG KR GG E ++T+ +LL ++DGF+ + V+
Sbjct: 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 243
Query: 121 LSGAD 125
GAD
Sbjct: 244 FVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 77/125 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG KR GG E ++T+ +LL ++DGF+ + V+
Sbjct: 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 174
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 175 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 234
Query: 121 LSGAD 125
GAD
Sbjct: 235 FVGAD 239
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 80/126 (63%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A++ AP I+FIDEIDAVG +R GG E ++T+ ++L ++DGF+ + VI
Sbjct: 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 155
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR++ LPD + + +I +H R+ LA D++ +
Sbjct: 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 215
Query: 121 LSGADI 126
SGAD+
Sbjct: 216 FSGADL 221
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNS-GGEREIQRTMLELLNQLDGFDS-RGDVKV 58
LF A++ APSI+FIDEIDA+G R G E ++T+ +LL ++DGF S V V
Sbjct: 95 LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154
Query: 59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
+ ATNR E LDPAL+RPGR DR++ PD + I +H + LA DVNLQE+
Sbjct: 155 LAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLT 214
Query: 119 DDLSGADIKAICT 131
L+GAD+ I
Sbjct: 215 AGLAGADLANIIN 227
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F AE++AP+I+FIDE+DA+ KR ++ ER R + +LL +DG R V V+ A
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAA 346
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 122 SGADIKAICT 131
GAD+ A+C+
Sbjct: 407 VGADLAALCS 416
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F AE++AP+I+FIDE+DA+ KR ++ ER R + +LL +DG R V V+ A
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAA 346
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 122 SGADIKAICT 131
GAD+ A+C+
Sbjct: 407 VGADLAALCS 416
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F AE++AP+I+FIDE+DA+ KR ++ ER R + +LL +DG R V V+ A
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAA 346
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 122 SGADIKAICT 131
GAD+ A+C+
Sbjct: 407 VGADLAALCS 416
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F AE++AP+I+FIDE+DA+ KR ++ ER R + +LL +DG R V V+ A
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAA 346
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 122 SGADIKAICT 131
GAD+ A+C+
Sbjct: 407 VGADLAALCS 416
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F AE++AP+I+FIDE+DA+ KR ++ ER R + +LL +DG R V V+ A
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAA 346
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 122 SGADIKAICT 131
GAD+ A+C+
Sbjct: 407 VGADLAALCS 416
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A + AP ++F DE+D++ R + G R + ++L ++DG ++ +V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + +DPA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L +
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 121 LSGADIKAIC 130
SGAD+ IC
Sbjct: 682 FSGADLTEIC 691
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F AE++AP+I+FIDE+DA+ KR ++ ER R + +LL +DG R V V+ A
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAA 346
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406
Query: 122 SGADIKAICT 131
GAD+ A+C+
Sbjct: 407 VGADLAALCS 416
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A + AP ++F DE+D++ R + G R + ++L ++DG ++ +V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + +DPA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L +
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 121 LSGADIKAIC 130
SGAD+ IC
Sbjct: 682 FSGADLTEIC 691
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A + AP ++F DE+D++ R + G R + ++L ++DG ++ +V +I
Sbjct: 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 159
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + +DPA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L +
Sbjct: 160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 219
Query: 121 LSGADIKAIC 130
SGAD+ IC
Sbjct: 220 FSGADLTEIC 229
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
LF+ A AP IV+IDEIDAVG KR + SG E ++T+ +LL ++DG + V V+
Sbjct: 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNL--QELIMA 117
+TNR + LD AL+RPGR+DR + LP + +R IF H + L + Q L
Sbjct: 150 ASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAEL 209
Query: 118 KDDLSGADIKAIC 130
SGADI IC
Sbjct: 210 TPGFSGADIANIC 222
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F+ A+ AP ++F DE+DA+ +R D +G R + +LL ++DG ++R V ++
Sbjct: 95 VFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS---VRVVNQLLTEMDGLEARQQVFIMA 151
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT---LAEDVNLQELI-- 115
ATNR + +DPA++RPGR+D+ + LP + I T T L DVNL+ +
Sbjct: 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211
Query: 116 MAKDDLSGADIKAI 129
+ D +GAD+ A+
Sbjct: 212 LRCDCYTGADLSAL 225
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVI 59
LF++A E+ PSI+FIDEID++ R ++ S R I+ E L Q+ G D + V+
Sbjct: 219 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVL 275
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH--TSRMTLAEDVNLQELIMA 117
ATN LD A+ R R +++I PLP+ + +F +H +++ +L E + QEL
Sbjct: 276 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE-ADFQELGRK 332
Query: 118 KDDLSGADIKAI 129
D SGADI I
Sbjct: 333 TDGYSGADISII 344
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVI 59
LF++A E+ PSI+FIDEID++ R ++ S R I+ E L Q+ G D + V+
Sbjct: 97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKT---EFLVQMQGVGVDNDGILVL 153
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH--TSRMTLAEDVNLQELIMA 117
ATN LD A+ R R +++I PLP+ + +F +H T++ +L E + +EL
Sbjct: 154 GATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTE-ADFRELGRK 210
Query: 118 KDDLSGADIKAIC 130
D SGADI I
Sbjct: 211 TDGYSGADISIIV 223
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTM-LELLNQLDGFDSRGD--VK 57
LF VA P+++FIDEID++ ++R D GE E R + E L QLDG + + +
Sbjct: 168 LFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRIL 223
Query: 58 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRI-FNIHTSRMTLAEDVNLQELIM 116
V+ ATNR + +D A R R+ +++ PLP+ +++I N+ + + +++++
Sbjct: 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ 281
Query: 117 AKDDLSGADIKAIC 130
D SGAD+ +C
Sbjct: 282 QSDAFSGADMTQLC 295
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF +A E+ PSI+FIDE+DA+ R + S R I+ +L +N + G DS+G V V+
Sbjct: 111 LFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLG 168
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH---TSRMTLAEDVNLQELIMA 117
ATN LD A+ R R +R+I PLPD + +F I+ T + ED + L
Sbjct: 169 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED--YRTLGAM 224
Query: 118 KDDLSGADIKAIC 130
+ SG+DI +
Sbjct: 225 TEGYSGSDIAVVV 237
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF +A E+ PSI+FID++DA+ R + S R I+ +L +N + G DS+G V V+
Sbjct: 135 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLG 192
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH---TSRMTLAEDVNLQELIMA 117
ATN LD A+ R R +R+I PLPD + +F I+ T + ED + L
Sbjct: 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED--YRTLGAM 248
Query: 118 KDDLSGADIKAIC 130
+ SG+DI +
Sbjct: 249 TEGYSGSDIAVVV 261
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF +A E+ PSI+FID++DA+ R + S R I+ +L +N + G DS+G V V+
Sbjct: 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLG 159
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH---TSRMTLAEDVNLQELIMA 117
ATN LD A+ R R +R+I PLPD + +F I+ T + ED + L
Sbjct: 160 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED--YRTLGAM 215
Query: 118 KDDLSGADIKAIC 130
+ SG+DI +
Sbjct: 216 TEGYSGSDIAVVV 228
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF +A E+ PSI+FID++DA+ R + S R I+ +L +N + G DS+G V V+
Sbjct: 120 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLG 177
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH---TSRMTLAEDVNLQELIMA 117
ATN LD A+ R R +R+I PLPD + +F I+ T + ED + L
Sbjct: 178 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED--YRTLGAM 233
Query: 118 KDDLSGADIKAIC 130
+ SG+DI +
Sbjct: 234 TEGYSGSDIAVVV 246
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 16/137 (11%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTM-LELLNQLDGFDSRGD--VK 57
LF VA E PSI+FID++D++ +R + GE + R + E L + DG S GD V
Sbjct: 199 LFAVARELQPSIIFIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGDDRVL 254
Query: 58 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTSRMTLAEDVNLQE 113
V+ ATNR + LD A++R R +++ LP+E+T+ + S +T E L +
Sbjct: 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE---LAQ 309
Query: 114 LIMAKDDLSGADIKAIC 130
L D SG+D+ A+
Sbjct: 310 LARMTDGYSGSDLTALA 326
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD---VK 57
LF VA PSI+FIDE+D++ ++R S R R E L + DG D +
Sbjct: 105 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR---RLKTEFLVEFDGLPGNPDGDRIV 161
Query: 58 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN-LQELIM 116
V+ ATNR + LD A +R R +++ LPDE+T+ + N + D L+ L
Sbjct: 162 VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219
Query: 117 AKDDLSGADIKAIC 130
D SG+D+ A+
Sbjct: 220 ITDGYSGSDLTALA 233
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 88 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130
D + KR IF+ TS+M L+E+V+L++ + D +SGADI +IC
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSIC 44
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 85 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
P P+E+ + I IH+ + L +NL+++ SGA++K +CT
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCT 47
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 87 PDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
P+E+ + I IH+ +M L +NL+++ SGA++K +CT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 92 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 129
+R IF S+M+LA + +L LI+ D LSGA I AI
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAI 40
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 86 LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
LPD + + IF IH+ M++ + + + + +GA+++++CT
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 52
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGDVK----VIM 60
E+H IVFIDEID + + S RE +QR +L L+ G VK + +
Sbjct: 247 EQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFI 304
Query: 61 ATNRIETLDPALIRP---GRIDRKIEF 84
A+ + P+ + P GR+ ++E
Sbjct: 305 ASGAFQIAKPSDLIPELQGRLPIRVEL 331
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGDVK----VIM 60
E+H IVFIDEID + + S RE +QR +L L+ G VK + +
Sbjct: 254 EQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFI 311
Query: 61 ATNRIETLDPALIRP---GRIDRKIEF 84
A+ + P+ + P GR+ ++E
Sbjct: 312 ASGAFQIAKPSDLIPELQGRLPIRVEL 338
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGDVK----VIM 60
E+H IVFIDEID + + S RE +QR +L L+ G VK + +
Sbjct: 248 EQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFI 305
Query: 61 ATNRIETLDPALIRP---GRIDRKIEF 84
A+ + P+ + P GR+ ++E
Sbjct: 306 ASGAFQIAKPSDLIPELQGRLPIRVEL 332
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 12 IVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGDVK----VIMATNRIE 66
IVFIDEID + K S + RE +QR +L L+ G VK + +A+ +
Sbjct: 253 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTDHILFIASGAFQ 312
Query: 67 TLDPALIRP---GRIDRKIEF 84
P+ + P GR+ ++E
Sbjct: 313 VARPSDLIPELQGRLPIRVEL 333
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 11 SIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGDVK----VIMATNRI 65
IVFIDEID + K S + RE +QR +L L+ G VK + +A+
Sbjct: 118 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF 177
Query: 66 ETLDPALIRP---GRIDRKIEF 84
+ P+ + P GR+ ++E
Sbjct: 178 QVARPSDLIPELQGRLPIRVEL 199
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 12 IVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGDVK----VIMATNRIE 66
IVFIDEID + K S + RE +QR +L L+ G VK + +A+ +
Sbjct: 253 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ 312
Query: 67 TLDPALIRP---GRIDRKIEF 84
P+ + P GR+ ++E
Sbjct: 313 VARPSDLIPELQGRLPIRVEL 333
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 88 DEKTKRRIFN--IHTSRMTLAEDVNLQELIMAKDDLSGADI 126
D K+ R+F+ I T R+ LAE + ELI KDD S D
Sbjct: 316 DVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDF 356
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 88 DEKTKRRIFN--IHTSRMTLAEDVNLQELIMAKDDLSGADI 126
D K+ R+F+ I T R+ LAE + ELI KDD S D
Sbjct: 149 DVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDF 189
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 88 DEKTKRRIFN--IHTSRMTLAEDVNLQELIMAKDDLSGADI 126
D K+ R+F+ I T R+ LAE + ELI KDD S D
Sbjct: 334 DVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDF 374
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 88 DEKTKRRIFN--IHTSRMTLAEDVNLQELIMAKDDLSGADI 126
D K+ R+F+ I T R+ LAE + ELI KDD S D
Sbjct: 314 DVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDF 354
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 11 SIVFIDEIDAV-----GTKRYDSNSGGEREIQRTMLELLN-----QLDGFDSRGD---VK 57
+FI+++DA GT +Y N+ + + T++ + + QL G ++ + V
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYNKQENARVP 157
Query: 58 VIMATNRIETLDPALIRPGRIDRKIEFP 85
+I+ N TL LIR GR+++ P
Sbjct: 158 IIVTGNDFSTLYAPLIRDGRMEKFYWAP 185
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 65 IETLDPA--LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
I+ DP ++ PG D I FP +EK + F+ + ++ N + L + KD
Sbjct: 514 IDVFDPKFNIVSPG-ADXSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKD 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,547,717
Number of Sequences: 62578
Number of extensions: 124318
Number of successful extensions: 309
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 55
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)