Query psy522
Match_columns 131
No_of_seqs 131 out of 1222
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 20:26:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-37 2.4E-42 222.7 12.9 131 1-131 236-366 (406)
2 KOG0730|consensus 100.0 1.7E-35 3.7E-40 224.0 10.9 128 1-131 519-646 (693)
3 KOG0734|consensus 100.0 1.4E-34 2.9E-39 215.4 10.2 128 1-131 388-515 (752)
4 KOG0733|consensus 100.0 4.1E-34 8.9E-39 215.3 12.1 128 1-131 596-727 (802)
5 KOG0733|consensus 100.0 2.9E-32 6.2E-37 205.4 10.0 128 1-131 274-405 (802)
6 KOG0738|consensus 100.0 3.4E-32 7.4E-37 196.4 9.1 127 1-131 296-426 (491)
7 KOG0736|consensus 100.0 4.7E-31 1E-35 202.7 12.9 130 1-131 756-889 (953)
8 PTZ00454 26S protease regulato 100.0 9.8E-30 2.1E-34 188.3 13.4 131 1-131 230-360 (398)
9 KOG0735|consensus 100.0 1.5E-29 3.3E-34 193.3 12.2 127 1-130 752-878 (952)
10 COG0465 HflB ATP-dependent Zn 100.0 1.9E-29 4.1E-34 192.1 11.7 131 1-131 234-364 (596)
11 KOG0728|consensus 100.0 3.4E-29 7.3E-34 173.2 10.4 131 1-131 232-362 (404)
12 KOG0731|consensus 100.0 8.8E-29 1.9E-33 191.6 12.0 131 1-131 395-527 (774)
13 TIGR01243 CDC48 AAA family ATP 100.0 1.8E-28 4E-33 193.6 13.6 129 1-131 538-666 (733)
14 KOG0739|consensus 100.0 9.7E-30 2.1E-34 179.1 5.4 125 1-130 217-343 (439)
15 PRK03992 proteasome-activating 100.0 3.8E-28 8.2E-33 180.0 13.5 131 1-131 216-346 (389)
16 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-28 5.9E-33 185.6 12.5 131 1-131 139-269 (495)
17 KOG0652|consensus 100.0 2E-28 4.4E-33 170.2 10.1 129 2-130 257-385 (424)
18 PRK10733 hflB ATP-dependent me 100.0 3.7E-28 7.9E-33 189.3 12.6 131 1-131 236-366 (644)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 5.1E-28 1.1E-32 182.8 12.3 127 1-131 310-438 (489)
20 KOG0726|consensus 100.0 6.9E-29 1.5E-33 174.4 7.0 131 1-131 270-400 (440)
21 COG0464 SpoVK ATPases of the A 100.0 6.5E-28 1.4E-32 183.5 11.8 128 1-131 327-456 (494)
22 KOG0727|consensus 100.0 4.3E-28 9.2E-33 167.9 9.5 131 1-131 240-370 (408)
23 PTZ00361 26 proteosome regulat 99.9 1.3E-27 2.9E-32 178.3 10.9 131 1-131 268-398 (438)
24 KOG0737|consensus 99.9 8.5E-28 1.8E-32 172.6 9.3 126 1-131 178-305 (386)
25 COG1223 Predicted ATPase (AAA+ 99.9 8.3E-28 1.8E-32 166.6 8.9 124 1-128 202-325 (368)
26 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.7E-27 5.8E-32 195.0 11.2 122 1-131 1724-1851(2281)
27 CHL00176 ftsH cell division pr 99.9 4.7E-27 1E-31 182.2 11.6 131 1-131 267-397 (638)
28 TIGR01242 26Sp45 26S proteasom 99.9 1.2E-25 2.5E-30 165.6 13.2 131 1-131 207-337 (364)
29 KOG0740|consensus 99.9 1.8E-25 3.8E-30 164.8 7.4 126 1-131 237-365 (428)
30 KOG0730|consensus 99.9 8.8E-25 1.9E-29 166.2 10.3 126 1-131 269-395 (693)
31 KOG0729|consensus 99.9 9.7E-25 2.1E-29 152.3 7.4 131 1-131 262-392 (435)
32 KOG0732|consensus 99.9 4.6E-24 1E-28 169.5 11.2 128 1-131 355-483 (1080)
33 TIGR03689 pup_AAA proteasome A 99.9 8.9E-24 1.9E-28 160.0 11.3 124 1-131 277-404 (512)
34 KOG0651|consensus 99.9 7.8E-24 1.7E-28 149.6 7.4 130 2-131 218-347 (388)
35 PLN00020 ribulose bisphosphate 99.9 1.8E-22 3.9E-27 146.6 11.1 115 1-120 199-330 (413)
36 TIGR01243 CDC48 AAA family ATP 99.9 4.2E-22 9.1E-27 157.7 12.4 128 1-131 263-390 (733)
37 KOG0741|consensus 99.9 7.2E-23 1.6E-27 153.1 3.3 121 10-131 325-449 (744)
38 KOG0735|consensus 99.7 4E-17 8.7E-22 125.9 9.1 129 1-130 486-617 (952)
39 KOG0742|consensus 99.7 9.9E-17 2.2E-21 117.8 8.9 124 1-130 434-585 (630)
40 KOG0736|consensus 99.7 2.1E-16 4.6E-21 122.7 10.2 125 1-130 482-606 (953)
41 KOG0743|consensus 99.6 1.6E-15 3.5E-20 112.2 9.6 120 8-129 285-412 (457)
42 PF00004 AAA: ATPase family as 99.5 3.3E-14 7.1E-19 90.2 7.3 82 1-86 49-132 (132)
43 COG0464 SpoVK ATPases of the A 99.5 9.5E-13 2.1E-17 100.7 12.1 126 1-130 68-193 (494)
44 KOG0744|consensus 99.2 1.6E-11 3.5E-16 88.2 4.4 116 12-129 253-388 (423)
45 PRK11034 clpA ATP-dependent Cl 99.0 5.4E-10 1.2E-14 89.1 6.9 90 2-103 271-365 (758)
46 TIGR02639 ClpA ATP-dependent C 99.0 1.6E-09 3.4E-14 86.6 8.3 111 1-123 266-386 (731)
47 CHL00181 cbbX CbbX; Provisiona 98.9 9.3E-09 2E-13 73.9 9.7 89 8-105 121-214 (287)
48 TIGR00763 lon ATP-dependent pr 98.9 6E-09 1.3E-13 83.8 9.0 88 2-100 408-505 (775)
49 TIGR03345 VI_ClpV1 type VI sec 98.8 1.6E-08 3.6E-13 81.9 7.7 109 2-123 272-391 (852)
50 TIGR02880 cbbX_cfxQ probable R 98.8 5.3E-08 1.2E-12 69.9 9.1 89 8-105 120-213 (284)
51 TIGR02881 spore_V_K stage V sp 98.7 8.8E-08 1.9E-12 67.9 8.7 88 9-106 105-197 (261)
52 PRK10865 protein disaggregatio 98.7 6.2E-08 1.3E-12 78.7 7.4 108 2-122 263-381 (857)
53 TIGR00635 ruvB Holliday juncti 98.7 1.3E-07 2.8E-12 68.2 8.2 67 54-122 128-195 (305)
54 TIGR03346 chaperone_ClpB ATP-d 98.7 8.1E-08 1.8E-12 78.0 7.3 109 2-123 258-377 (852)
55 PRK00080 ruvB Holliday junctio 98.7 1.4E-07 3E-12 69.0 7.8 67 54-122 149-216 (328)
56 TIGR00362 DnaA chromosomal rep 98.6 1.9E-07 4.1E-12 70.1 7.4 106 9-129 199-310 (405)
57 PRK06893 DNA replication initi 98.5 1.9E-07 4.1E-12 65.1 5.4 100 9-120 91-195 (229)
58 CHL00095 clpC Clp protease ATP 98.5 3.6E-07 7.9E-12 74.1 7.7 110 1-123 263-382 (821)
59 PRK00149 dnaA chromosomal repl 98.5 3.8E-07 8.2E-12 69.4 7.1 104 9-127 211-320 (450)
60 PRK14088 dnaA chromosomal repl 98.5 8.7E-07 1.9E-11 67.3 7.6 105 9-128 194-304 (440)
61 PRK08727 hypothetical protein; 98.4 9.3E-07 2E-11 61.8 6.2 99 8-120 92-196 (233)
62 PRK14086 dnaA chromosomal repl 98.4 2.4E-06 5.2E-11 66.9 8.1 106 8-128 376-487 (617)
63 TIGR02902 spore_lonB ATP-depen 98.4 4.7E-06 1E-10 64.7 9.6 70 56-130 235-305 (531)
64 PF00308 Bac_DnaA: Bacterial d 98.3 1.5E-06 3.2E-11 60.2 6.0 108 8-130 96-209 (219)
65 PRK14961 DNA polymerase III su 98.3 5.9E-06 1.3E-10 61.3 8.6 97 10-126 120-217 (363)
66 TIGR03420 DnaA_homol_Hda DnaA 98.2 4.6E-06 1E-10 57.6 6.7 106 10-130 91-202 (226)
67 PRK08084 DNA replication initi 98.2 2.6E-06 5.6E-11 59.6 5.3 96 11-120 99-201 (235)
68 PRK14087 dnaA chromosomal repl 98.2 4.4E-06 9.4E-11 63.7 7.0 108 8-130 205-320 (450)
69 PRK14956 DNA polymerase III su 98.2 7.3E-06 1.6E-10 62.6 8.1 94 9-121 121-215 (484)
70 PRK07940 DNA polymerase III su 98.2 1E-05 2.2E-10 60.7 8.6 94 10-126 118-211 (394)
71 PRK07003 DNA polymerase III su 98.2 6.6E-06 1.4E-10 65.8 7.9 93 10-121 120-213 (830)
72 PRK12422 chromosomal replicati 98.2 6.3E-06 1.4E-10 62.7 7.4 98 8-119 201-304 (445)
73 TIGR02397 dnaX_nterm DNA polym 98.2 1.1E-05 2.3E-10 59.4 8.0 91 11-120 119-210 (355)
74 PRK05642 DNA replication initi 98.2 1.1E-05 2.4E-10 56.5 7.4 96 11-120 99-200 (234)
75 TIGR02928 orc1/cdc6 family rep 98.2 2.6E-05 5.6E-10 57.6 9.7 81 8-101 128-213 (365)
76 PRK14962 DNA polymerase III su 98.1 1.7E-05 3.8E-10 60.8 8.4 92 10-120 118-210 (472)
77 PRK06645 DNA polymerase III su 98.1 2.1E-05 4.5E-10 60.8 8.6 98 10-127 129-227 (507)
78 PTZ00112 origin recognition co 98.1 1.2E-05 2.6E-10 65.3 7.2 80 9-103 869-952 (1164)
79 PRK10787 DNA-binding ATP-depen 98.1 1.3E-05 2.9E-10 64.8 7.3 80 11-101 418-507 (784)
80 PRK05563 DNA polymerase III su 98.1 2.7E-05 5.8E-10 60.9 8.7 97 10-126 120-217 (559)
81 TIGR00678 holB DNA polymerase 98.1 2.9E-05 6.3E-10 52.3 7.8 88 9-120 96-183 (188)
82 PRK12323 DNA polymerase III su 98.1 1.3E-05 2.8E-10 63.2 6.9 92 10-120 125-217 (700)
83 PRK07994 DNA polymerase III su 98.1 2.2E-05 4.8E-10 62.1 7.8 92 10-120 120-212 (647)
84 PHA02544 44 clamp loader, smal 98.0 3.7E-05 8E-10 55.8 8.1 73 9-99 100-172 (316)
85 PRK00411 cdc6 cell division co 98.0 2.5E-05 5.3E-10 58.3 6.7 100 8-120 137-243 (394)
86 PRK07764 DNA polymerase III su 98.0 4.4E-05 9.5E-10 62.1 8.5 93 9-120 120-213 (824)
87 PRK14951 DNA polymerase III su 98.0 5.7E-05 1.2E-09 59.6 8.8 97 11-127 126-223 (618)
88 PRK04132 replication factor C 98.0 4.9E-05 1.1E-09 61.8 8.4 91 11-120 632-723 (846)
89 PRK04195 replication factor C 98.0 7.9E-05 1.7E-09 57.3 9.2 95 9-120 98-194 (482)
90 PRK14958 DNA polymerase III su 97.9 4.3E-05 9.3E-10 59.1 7.1 98 11-128 121-219 (509)
91 PRK09087 hypothetical protein; 97.9 2.5E-05 5.5E-10 54.4 5.3 92 11-119 89-186 (226)
92 PRK14960 DNA polymerase III su 97.9 7.7E-05 1.7E-09 59.1 8.3 99 9-127 118-217 (702)
93 PRK14964 DNA polymerase III su 97.9 6.1E-05 1.3E-09 58.0 7.5 99 10-128 117-216 (491)
94 PLN03025 replication factor C 97.9 5.9E-05 1.3E-09 55.0 7.1 93 9-120 99-192 (319)
95 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00011 2.4E-09 56.6 8.8 104 10-130 82-186 (489)
96 PRK06620 hypothetical protein; 97.9 2.3E-05 4.9E-10 54.2 4.6 90 10-119 86-180 (214)
97 PRK08451 DNA polymerase III su 97.9 0.00013 2.8E-09 56.7 9.1 97 11-127 119-216 (535)
98 PRK14963 DNA polymerase III su 97.9 0.00013 2.8E-09 56.5 9.0 93 9-120 116-209 (504)
99 COG0593 DnaA ATPase involved i 97.8 7.9E-05 1.7E-09 56.0 7.1 94 10-117 176-275 (408)
100 PRK14970 DNA polymerase III su 97.8 0.00019 4.2E-09 53.2 9.1 92 10-120 109-201 (367)
101 PRK08903 DnaA regulatory inact 97.8 0.00012 2.5E-09 50.8 7.4 104 9-129 90-199 (227)
102 PRK09112 DNA polymerase III su 97.8 0.00021 4.6E-09 52.9 8.9 93 9-121 141-233 (351)
103 PRK06964 DNA polymerase III su 97.8 8E-05 1.7E-09 54.9 6.5 57 38-99 147-203 (342)
104 PRK07133 DNA polymerase III su 97.8 0.0002 4.3E-09 57.4 9.1 92 10-120 119-211 (725)
105 PRK14959 DNA polymerase III su 97.8 0.00011 2.3E-09 58.0 7.5 92 10-120 120-212 (624)
106 PRK06647 DNA polymerase III su 97.8 0.00016 3.4E-09 56.7 8.2 97 10-126 120-217 (563)
107 PRK05896 DNA polymerase III su 97.8 0.00011 2.3E-09 57.8 7.2 91 11-120 121-212 (605)
108 PRK14953 DNA polymerase III su 97.8 0.00019 4.2E-09 55.3 8.5 92 10-120 120-212 (486)
109 PRK12402 replication factor C 97.8 0.00022 4.8E-09 52.0 8.5 90 10-118 126-216 (337)
110 PRK06305 DNA polymerase III su 97.8 0.0002 4.2E-09 54.8 8.3 94 8-120 120-214 (451)
111 PRK14949 DNA polymerase III su 97.7 0.00028 6.1E-09 57.6 9.3 93 10-121 120-213 (944)
112 PRK05707 DNA polymerase III su 97.7 0.00024 5.1E-09 52.2 7.9 72 9-99 106-177 (328)
113 PRK14957 DNA polymerase III su 97.7 0.00019 4E-09 56.0 7.7 92 10-120 120-212 (546)
114 PRK13342 recombination factor 97.7 0.00032 6.9E-09 53.0 8.7 91 9-120 92-188 (413)
115 PRK14952 DNA polymerase III su 97.7 0.00031 6.7E-09 55.3 8.7 92 10-120 119-211 (584)
116 TIGR01650 PD_CobS cobaltochela 97.7 0.00051 1.1E-08 50.3 9.0 81 9-102 134-235 (327)
117 PRK14965 DNA polymerase III su 97.7 0.00012 2.5E-09 57.6 6.0 91 11-120 121-212 (576)
118 PRK05342 clpX ATP-dependent pr 97.6 0.00079 1.7E-08 50.9 9.4 27 69-97 296-322 (412)
119 PRK07471 DNA polymerase III su 97.6 0.00057 1.2E-08 50.9 8.6 74 8-100 140-213 (365)
120 PRK14969 DNA polymerase III su 97.6 0.00037 8E-09 54.3 7.7 92 10-120 120-212 (527)
121 PRK08691 DNA polymerase III su 97.6 0.00036 7.9E-09 55.7 7.7 98 10-127 120-218 (709)
122 PF05496 RuvB_N: Holliday junc 97.6 0.00041 8.9E-09 48.3 7.1 97 9-121 101-214 (233)
123 PRK00440 rfc replication facto 97.6 0.0008 1.7E-08 48.7 9.0 92 10-120 103-195 (319)
124 COG0466 Lon ATP-dependent Lon 97.6 0.00029 6.3E-09 56.0 6.8 91 3-100 412-508 (782)
125 PF05673 DUF815: Protein of un 97.6 0.0025 5.4E-08 44.9 10.7 110 7-129 104-241 (249)
126 COG0714 MoxR-like ATPases [Gen 97.5 0.00039 8.4E-09 51.0 6.9 78 11-101 114-204 (329)
127 COG2256 MGS1 ATPase related to 97.5 0.00049 1.1E-08 51.4 7.2 79 1-100 92-176 (436)
128 COG2812 DnaX DNA polymerase II 97.5 0.00056 1.2E-08 52.9 7.6 92 10-120 120-212 (515)
129 PRK11034 clpA ATP-dependent Cl 97.5 0.00052 1.1E-08 55.6 7.7 82 4-101 552-667 (758)
130 TIGR00382 clpX endopeptidase C 97.5 0.001 2.2E-08 50.3 8.8 59 70-130 303-377 (413)
131 PF01637 Arch_ATPase: Archaeal 97.5 0.00059 1.3E-08 46.7 7.1 105 10-127 119-232 (234)
132 PRK14950 DNA polymerase III su 97.5 0.00073 1.6E-08 53.3 8.2 98 10-127 121-219 (585)
133 COG0542 clpA ATP-binding subun 97.5 0.00025 5.4E-09 57.1 5.6 86 3-100 256-346 (786)
134 PRK14948 DNA polymerase III su 97.5 0.00062 1.3E-08 54.0 7.6 92 10-120 122-214 (620)
135 cd00009 AAA The AAA+ (ATPases 97.5 0.00056 1.2E-08 43.0 6.2 68 5-85 80-150 (151)
136 PRK09111 DNA polymerase III su 97.4 0.00096 2.1E-08 52.7 8.4 97 10-126 133-230 (598)
137 TIGR02639 ClpA ATP-dependent C 97.4 0.00056 1.2E-08 55.2 7.2 82 4-101 548-663 (731)
138 TIGR02640 gas_vesic_GvpN gas v 97.4 0.00083 1.8E-08 47.8 7.3 77 10-100 106-198 (262)
139 KOG0989|consensus 97.4 0.00075 1.6E-08 48.9 6.9 91 11-120 131-222 (346)
140 PRK08769 DNA polymerase III su 97.4 0.0015 3.2E-08 47.9 8.3 69 11-98 115-183 (319)
141 KOG2004|consensus 97.4 0.00057 1.2E-08 54.5 6.5 87 7-100 504-596 (906)
142 PRK11331 5-methylcytosine-spec 97.4 0.00074 1.6E-08 51.5 6.6 34 50-86 320-357 (459)
143 PRK13407 bchI magnesium chelat 97.4 0.00083 1.8E-08 49.5 6.7 77 11-100 130-216 (334)
144 PRK06090 DNA polymerase III su 97.3 0.00088 1.9E-08 49.0 6.6 70 10-98 109-178 (319)
145 PRK06871 DNA polymerase III su 97.3 0.00088 1.9E-08 49.2 6.5 70 11-99 109-178 (325)
146 TIGR02903 spore_lon_C ATP-depe 97.3 0.0049 1.1E-07 49.0 10.5 48 55-105 323-371 (615)
147 PRK07993 DNA polymerase III su 97.3 0.0008 1.7E-08 49.6 5.6 70 10-98 109-178 (334)
148 PRK13341 recombination factor 97.2 0.0016 3.5E-08 52.5 7.5 72 9-101 109-182 (725)
149 TIGR03015 pepcterm_ATPase puta 97.2 0.0015 3.2E-08 46.2 6.7 56 72-130 179-239 (269)
150 TIGR02030 BchI-ChlI magnesium 97.2 0.0015 3.3E-08 48.2 6.6 77 10-99 132-218 (337)
151 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0037 8.1E-08 51.4 8.5 111 3-130 662-823 (852)
152 PRK08058 DNA polymerase III su 97.1 0.0016 3.6E-08 47.8 6.0 70 10-98 111-180 (329)
153 smart00382 AAA ATPases associa 97.1 0.0015 3.2E-08 40.6 5.0 76 2-87 71-147 (148)
154 PRK14971 DNA polymerase III su 97.1 0.005 1.1E-07 48.9 8.8 91 11-120 123-214 (614)
155 PRK05564 DNA polymerase III su 97.1 0.0065 1.4E-07 44.2 8.9 89 10-120 94-182 (313)
156 PRK14955 DNA polymerase III su 97.1 0.0017 3.7E-08 48.9 6.0 91 11-120 129-220 (397)
157 COG2607 Predicted ATPase (AAA+ 97.1 0.014 3.1E-07 41.2 9.9 86 9-107 139-246 (287)
158 PHA02244 ATPase-like protein 97.0 0.0077 1.7E-07 45.0 8.9 70 9-92 180-266 (383)
159 PRK07399 DNA polymerase III su 97.0 0.0065 1.4E-07 44.4 8.3 90 10-121 125-214 (314)
160 PRK07276 DNA polymerase III su 97.0 0.0096 2.1E-07 43.1 9.0 67 10-96 105-171 (290)
161 PRK14954 DNA polymerase III su 97.0 0.0038 8.3E-08 49.6 7.4 92 10-120 128-220 (620)
162 CHL00081 chlI Mg-protoporyphyr 97.0 0.0027 5.8E-08 47.1 6.0 78 10-100 145-232 (350)
163 PRK06581 DNA polymerase III su 97.0 0.0039 8.6E-08 44.0 6.4 76 10-104 90-165 (263)
164 CHL00095 clpC Clp protease ATP 96.9 0.0049 1.1E-07 50.6 7.9 84 3-102 605-734 (821)
165 PF13177 DNA_pol3_delta2: DNA 96.9 0.0039 8.4E-08 41.2 5.6 61 8-87 101-161 (162)
166 KOG0741|consensus 96.8 0.0037 7.9E-08 48.7 5.8 92 1-98 590-684 (744)
167 COG2255 RuvB Holliday junction 96.8 0.009 2E-07 43.1 7.3 66 54-121 150-216 (332)
168 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0058 1.3E-07 50.3 7.2 81 5-101 663-777 (852)
169 KOG2035|consensus 96.8 0.0075 1.6E-07 43.5 6.8 92 11-121 129-221 (351)
170 PF05729 NACHT: NACHT domain 96.7 0.013 2.9E-07 37.8 7.5 88 4-102 76-165 (166)
171 smart00350 MCM minichromosome 96.7 0.0069 1.5E-07 47.1 6.9 79 10-101 301-401 (509)
172 COG1239 ChlI Mg-chelatase subu 96.7 0.011 2.5E-07 44.5 7.7 84 4-101 140-233 (423)
173 COG1220 HslU ATP-dependent pro 96.6 0.0053 1.2E-07 45.4 5.4 82 10-96 251-345 (444)
174 PRK05201 hslU ATP-dependent pr 96.6 0.0035 7.7E-08 47.6 4.5 83 9-96 249-344 (443)
175 COG0470 HolB ATPase involved i 96.6 0.013 2.8E-07 42.4 7.1 70 9-97 109-178 (325)
176 TIGR00390 hslU ATP-dependent p 96.5 0.0057 1.2E-07 46.4 5.1 83 9-96 247-342 (441)
177 PF07693 KAP_NTPase: KAP famil 96.4 0.019 4.1E-07 41.7 7.2 81 7-102 170-265 (325)
178 COG0542 clpA ATP-binding subun 96.3 0.013 2.9E-07 47.5 6.4 83 3-101 587-706 (786)
179 TIGR02031 BchD-ChlD magnesium 96.3 0.016 3.4E-07 45.9 6.8 78 11-101 86-175 (589)
180 PF07728 AAA_5: AAA domain (dy 96.3 0.0046 9.9E-08 39.4 3.1 22 55-78 114-139 (139)
181 COG1474 CDC6 Cdc6-related prot 96.3 0.022 4.9E-07 42.5 6.9 80 8-102 122-205 (366)
182 PRK08699 DNA polymerase III su 96.2 0.01 2.2E-07 43.6 4.8 70 10-98 114-183 (325)
183 TIGR02442 Cob-chelat-sub cobal 96.2 0.017 3.8E-07 46.1 6.3 74 11-100 128-214 (633)
184 PRK10865 protein disaggregatio 96.2 0.019 4.2E-07 47.4 6.7 80 7-102 668-781 (857)
185 PF05707 Zot: Zonular occluden 95.9 0.0079 1.7E-07 40.8 2.9 68 9-87 79-146 (193)
186 PRK07132 DNA polymerase III su 95.9 0.045 9.8E-07 39.8 6.8 71 9-98 90-160 (299)
187 KOG2228|consensus 95.8 0.03 6.6E-07 41.4 5.6 76 10-100 138-219 (408)
188 PF14516 AAA_35: AAA-like doma 95.7 0.18 4E-06 37.1 9.6 104 8-121 126-232 (331)
189 KOG2028|consensus 95.6 0.075 1.6E-06 40.0 7.0 79 1-100 209-294 (554)
190 PRK13531 regulatory ATPase Rav 95.5 0.043 9.4E-07 42.5 5.8 73 11-99 109-193 (498)
191 PF05621 TniB: Bacterial TniB 95.4 0.035 7.5E-07 40.4 4.6 110 3-124 139-257 (302)
192 PRK05818 DNA polymerase III su 95.4 0.07 1.5E-06 38.1 6.1 59 10-87 89-147 (261)
193 KOG1514|consensus 95.3 0.1 2.2E-06 42.0 7.4 82 7-103 506-592 (767)
194 PF05872 DUF853: Bacterial pro 95.2 0.051 1.1E-06 41.7 5.3 89 11-113 257-347 (502)
195 PF06068 TIP49: TIP49 C-termin 95.2 0.069 1.5E-06 40.0 5.8 77 10-106 279-367 (398)
196 PRK08485 DNA polymerase III su 95.0 0.1 2.2E-06 35.9 5.7 58 38-99 69-138 (206)
197 PRK09862 putative ATP-dependen 94.8 0.13 2.9E-06 40.1 6.8 35 54-90 336-391 (506)
198 PF07724 AAA_2: AAA domain (Cd 94.8 0.062 1.3E-06 35.9 4.3 55 11-68 70-133 (171)
199 PRK05917 DNA polymerase III su 94.8 0.068 1.5E-06 38.8 4.7 58 11-87 97-154 (290)
200 PF12846 AAA_10: AAA-like doma 94.7 0.03 6.4E-07 39.8 2.8 72 7-93 218-294 (304)
201 KOG1942|consensus 94.5 0.67 1.4E-05 34.1 9.1 89 8-116 295-397 (456)
202 PF00493 MCM: MCM2/3/5 family 94.3 0.14 3E-06 37.8 5.5 81 10-103 122-224 (331)
203 COG1219 ClpX ATP-dependent pro 94.3 0.11 2.3E-06 38.4 4.7 25 4-29 158-182 (408)
204 KOG0990|consensus 94.0 0.17 3.8E-06 37.2 5.3 75 9-102 131-205 (360)
205 KOG1968|consensus 93.9 0.34 7.4E-06 40.3 7.4 97 12-129 431-528 (871)
206 COG3267 ExeA Type II secretory 93.6 1.2 2.7E-05 31.8 8.9 111 6-130 128-246 (269)
207 COG1224 TIP49 DNA helicase TIP 92.9 1.8 3.9E-05 32.7 9.2 89 10-117 292-392 (450)
208 TIGR00764 lon_rel lon-related 92.9 0.41 8.9E-06 38.3 6.3 44 55-100 268-319 (608)
209 PRK14700 recombination factor 92.9 0.46 1E-05 34.6 6.0 48 52-102 5-54 (300)
210 PF00931 NB-ARC: NB-ARC domain 92.7 0.86 1.9E-05 32.3 7.3 98 7-127 99-200 (287)
211 KOG2227|consensus 92.6 0.33 7.1E-06 37.6 5.1 102 9-123 256-363 (529)
212 TIGR00368 Mg chelatase-related 92.4 0.53 1.1E-05 36.8 6.2 68 10-90 296-394 (499)
213 PTZ00111 DNA replication licen 92.3 0.79 1.7E-05 38.3 7.3 78 11-101 559-658 (915)
214 PF12775 AAA_7: P-loop contain 91.6 0.53 1.2E-05 33.8 5.2 86 8-101 99-194 (272)
215 TIGR00602 rad24 checkpoint pro 91.1 2.7 5.8E-05 34.0 9.0 79 9-102 195-289 (637)
216 KOG2170|consensus 91.0 1.7 3.7E-05 31.9 7.1 51 71-121 271-322 (344)
217 PF13304 AAA_21: AAA domain; P 90.9 0.24 5.1E-06 33.7 2.7 45 11-69 259-303 (303)
218 PRK13406 bchD magnesium chelat 90.8 0.55 1.2E-05 37.4 4.9 65 11-91 95-173 (584)
219 KOG0745|consensus 90.4 0.67 1.4E-05 35.8 4.8 20 5-25 288-307 (564)
220 KOG2383|consensus 90.3 0.089 1.9E-06 39.8 0.2 49 53-112 222-271 (467)
221 PF05272 VirE: Virulence-assoc 90.3 0.79 1.7E-05 31.4 4.8 42 55-99 140-192 (198)
222 PHA00012 I assembly protein 90.2 0.68 1.5E-05 34.4 4.6 57 9-74 81-137 (361)
223 PF07726 AAA_3: ATPase family 88.5 0.11 2.3E-06 33.3 -0.5 23 54-78 102-129 (131)
224 PLN03210 Resistant to P. syrin 87.6 8.8 0.00019 33.2 10.1 92 7-122 294-389 (1153)
225 PRK05574 holA DNA polymerase I 87.6 9 0.00019 27.9 9.1 83 10-106 77-165 (340)
226 PF13401 AAA_22: AAA domain; P 87.5 0.84 1.8E-05 28.2 3.2 19 4-22 82-100 (131)
227 KOG1051|consensus 87.4 1.6 3.5E-05 36.5 5.4 49 2-64 653-710 (898)
228 PRK08116 hypothetical protein; 87.3 1.3 2.9E-05 31.7 4.4 71 9-96 178-256 (268)
229 KOG1051|consensus 87.3 1.5 3.2E-05 36.7 5.1 83 7-102 278-365 (898)
230 TIGR02974 phageshock_pspF psp 87.2 1.4 2.9E-05 32.6 4.6 79 10-101 94-188 (329)
231 PRK13539 cytochrome c biogenes 86.5 1.3 2.8E-05 30.1 3.9 65 3-89 139-203 (207)
232 cd01120 RecA-like_NTPases RecA 86.1 2.3 5.1E-05 26.9 4.8 60 3-66 79-138 (165)
233 COG1136 SalX ABC-type antimicr 86.0 3.2 7E-05 29.1 5.6 63 3-85 154-216 (226)
234 PF09820 AAA-ATPase_like: Pred 85.9 2.7 5.9E-05 30.3 5.4 111 7-123 141-263 (284)
235 COG1241 MCM2 Predicted ATPase 85.7 1.5 3.3E-05 35.6 4.3 79 10-101 384-484 (682)
236 TIGR02237 recomb_radB DNA repa 85.6 0.78 1.7E-05 31.1 2.5 62 5-69 93-154 (209)
237 COG1131 CcmA ABC-type multidru 85.3 2.8 6.1E-05 30.4 5.3 56 2-70 147-202 (293)
238 PRK11388 DNA-binding transcrip 84.8 3.9 8.5E-05 32.9 6.4 13 10-22 417-429 (638)
239 PRK10365 transcriptional regul 84.6 4.3 9.3E-05 30.8 6.3 15 9-23 233-247 (441)
240 KOG1969|consensus 84.5 13 0.00029 30.8 8.9 62 56-119 439-501 (877)
241 PRK11608 pspF phage shock prot 83.9 5.1 0.00011 29.5 6.2 77 10-100 101-194 (326)
242 PF13173 AAA_14: AAA domain 83.8 2.6 5.6E-05 26.3 4.1 64 9-91 61-126 (128)
243 COG4565 CitB Response regulato 83.5 13 0.00028 26.0 7.7 75 6-99 43-117 (224)
244 COG4555 NatA ABC-type Na+ tran 83.4 4.2 9.1E-05 28.4 5.1 52 3-68 145-196 (245)
245 PF14532 Sigma54_activ_2: Sigm 83.3 4.7 0.0001 25.5 5.2 15 8-22 68-82 (138)
246 PRK13538 cytochrome c biogenes 82.4 7.3 0.00016 26.3 6.2 53 3-69 141-193 (204)
247 COG1116 TauB ABC-type nitrate/ 81.9 8.3 0.00018 27.5 6.3 17 2-18 141-157 (248)
248 PF10236 DAP3: Mitochondrial r 81.8 18 0.00039 26.5 11.1 119 9-128 156-308 (309)
249 TIGR01128 holA DNA polymerase 81.6 8.6 0.00019 27.5 6.6 94 10-119 47-144 (302)
250 KOG2680|consensus 81.5 4.9 0.00011 29.9 5.2 39 64-105 338-376 (454)
251 COG1121 ZnuC ABC-type Mn/Zn tr 80.4 5.8 0.00013 28.4 5.2 53 2-68 150-202 (254)
252 KOG0481|consensus 80.2 2.2 4.9E-05 33.7 3.3 82 10-98 429-525 (729)
253 smart00763 AAA_PrkA PrkA AAA d 80.2 3.2 7E-05 31.2 4.0 45 56-103 278-330 (361)
254 COG4175 ProV ABC-type proline/ 80.0 3 6.6E-05 31.0 3.7 70 3-88 176-250 (386)
255 PRK11361 acetoacetate metaboli 79.6 10 0.00023 28.9 6.8 13 10-22 238-250 (457)
256 TIGR01818 ntrC nitrogen regula 79.5 5.6 0.00012 30.4 5.3 79 10-101 229-323 (463)
257 PRK10263 DNA translocase FtsK; 78.9 3.3 7.1E-05 36.2 4.1 74 11-97 1142-1217(1355)
258 COG3899 Predicted ATPase [Gene 78.9 18 0.00039 30.5 8.2 110 6-130 151-261 (849)
259 PRK13541 cytochrome c biogenes 78.8 11 0.00023 25.3 6.0 54 3-70 135-188 (195)
260 COG1119 ModF ABC-type molybden 78.8 9 0.00019 27.4 5.6 61 1-73 181-241 (257)
261 TIGR01166 cbiO cobalt transpor 78.4 8.8 0.00019 25.5 5.5 51 2-66 138-188 (190)
262 PRK11629 lolD lipoprotein tran 78.3 3 6.5E-05 28.9 3.2 55 2-69 156-210 (233)
263 PRK04841 transcriptional regul 78.2 23 0.0005 29.5 8.8 95 8-122 120-219 (903)
264 COG1485 Predicted ATPase [Gene 77.6 3.2 7E-05 31.1 3.3 46 11-71 132-178 (367)
265 KOG0732|consensus 77.5 1.3 2.9E-05 37.5 1.5 83 1-101 645-727 (1080)
266 TIGR01817 nifA Nif-specific re 77.1 8.9 0.00019 30.2 5.8 78 10-101 291-385 (534)
267 PRK13540 cytochrome c biogenes 77.0 10 0.00022 25.6 5.5 54 2-69 138-191 (200)
268 cd03231 ABC_CcmA_heme_exporter 77.0 10 0.00023 25.5 5.6 55 2-70 136-190 (201)
269 KOG0478|consensus 76.8 13 0.00028 30.5 6.6 78 10-100 527-626 (804)
270 COG3950 Predicted ATP-binding 76.6 4.1 8.8E-05 30.8 3.6 54 5-64 291-344 (440)
271 PRK13543 cytochrome c biogenes 76.4 9 0.00019 26.1 5.2 54 2-69 148-201 (214)
272 cd03216 ABC_Carb_Monos_I This 76.2 2.5 5.5E-05 27.6 2.3 54 2-69 93-146 (163)
273 cd03240 ABC_Rad50 The catalyti 76.1 4.5 9.7E-05 27.6 3.6 17 6-22 136-152 (204)
274 cd03233 ABC_PDR_domain1 The pl 75.9 9.2 0.0002 25.9 5.1 55 2-68 129-183 (202)
275 PRK13537 nodulation ABC transp 75.7 7.7 0.00017 28.3 4.9 53 2-68 149-201 (306)
276 cd03298 ABC_ThiQ_thiamine_tran 75.3 2.5 5.3E-05 28.8 2.1 55 2-69 139-193 (211)
277 cd03226 ABC_cobalt_CbiO_domain 75.0 6.9 0.00015 26.4 4.3 53 2-68 137-189 (205)
278 PRK07452 DNA polymerase III su 74.6 30 0.00066 25.2 7.9 63 40-106 81-149 (326)
279 TIGR02211 LolD_lipo_ex lipopro 74.5 5.2 0.00011 27.3 3.6 54 2-68 152-205 (221)
280 COG1106 Predicted ATPases [Gen 74.3 1.9 4.2E-05 32.4 1.5 51 11-74 272-322 (371)
281 TIGR00929 VirB4_CagE type IV s 74.0 6.9 0.00015 32.1 4.7 67 7-88 627-698 (785)
282 cd03232 ABC_PDR_domain2 The pl 73.8 8.1 0.00017 25.9 4.3 51 2-66 119-169 (192)
283 cd03262 ABC_HisP_GlnQ_permease 73.6 8.2 0.00018 26.1 4.4 53 2-68 146-198 (213)
284 PRK13853 type IV secretion sys 73.6 2.5 5.4E-05 35.0 2.1 67 8-89 626-697 (789)
285 COG2909 MalT ATP-dependent tra 73.5 29 0.00064 29.3 7.9 102 3-123 123-228 (894)
286 TIGR03740 galliderm_ABC gallid 73.4 9.6 0.00021 26.1 4.7 54 2-69 135-188 (223)
287 TIGR00960 3a0501s02 Type II (G 73.3 10 0.00022 25.8 4.8 53 2-68 149-201 (216)
288 cd01121 Sms Sms (bacterial rad 73.1 24 0.00052 26.7 7.0 23 2-24 151-173 (372)
289 PRK06526 transposase; Provisio 73.0 5.5 0.00012 28.3 3.5 15 8-22 158-172 (254)
290 COG1067 LonB Predicted ATP-dep 72.7 5.1 0.00011 32.5 3.5 45 56-102 277-329 (647)
291 cd03267 ABC_NatA_like Similar 72.7 4.1 9E-05 28.3 2.8 54 2-68 164-217 (236)
292 TIGR01277 thiQ thiamine ABC tr 72.4 3.1 6.7E-05 28.3 2.1 53 3-68 140-192 (213)
293 PF04465 DUF499: Protein of un 71.5 4.9 0.00011 34.4 3.3 17 7-23 97-113 (1035)
294 TIGR03864 PQQ_ABC_ATP ABC tran 71.3 4.9 0.00011 27.8 2.9 55 2-69 143-197 (236)
295 cd03218 ABC_YhbG The ABC trans 71.2 11 0.00024 25.9 4.6 53 2-68 144-196 (232)
296 cd03252 ABCC_Hemolysin The ABC 71.2 10 0.00022 26.2 4.4 52 2-68 149-200 (237)
297 PF03969 AFG1_ATPase: AFG1-lik 71.1 7.7 0.00017 29.2 4.0 45 11-70 129-174 (362)
298 COG2874 FlaH Predicted ATPases 70.9 4.2 9.1E-05 28.5 2.4 59 6-78 120-178 (235)
299 COG2401 ABC-type ATPase fused 70.9 2.1 4.5E-05 33.1 1.0 54 3-69 519-572 (593)
300 TIGR02915 PEP_resp_reg putativ 70.7 12 0.00027 28.4 5.2 13 10-22 234-246 (445)
301 cd03230 ABC_DR_subfamily_A Thi 70.5 5.1 0.00011 26.4 2.7 53 2-68 106-158 (173)
302 PRK10619 histidine/lysine/argi 70.5 11 0.00023 26.5 4.5 54 2-69 163-216 (257)
303 PRK11231 fecE iron-dicitrate t 70.4 10 0.00023 26.5 4.4 53 2-68 149-201 (255)
304 cd03227 ABC_Class2 ABC-type Cl 70.4 5.9 0.00013 25.8 3.0 47 9-69 99-145 (162)
305 PRK11300 livG leucine/isoleuci 70.3 3.8 8.2E-05 28.7 2.2 55 2-69 164-218 (255)
306 COG1066 Sms Predicted ATP-depe 70.3 16 0.00035 28.2 5.5 102 2-107 161-263 (456)
307 TIGR02770 nickel_nikD nickel i 70.1 3.8 8.2E-05 28.3 2.1 54 2-68 136-189 (230)
308 PRK09361 radB DNA repair and r 70.0 2.2 4.8E-05 29.3 0.9 86 8-94 106-198 (225)
309 TIGR02858 spore_III_AA stage I 69.9 14 0.0003 26.6 4.9 62 2-85 187-256 (270)
310 cd03255 ABC_MJ0796_Lo1CDE_FtsE 69.8 4.7 0.0001 27.5 2.5 54 2-68 151-204 (218)
311 cd03256 ABC_PhnC_transporter A 69.5 4.2 9.2E-05 28.1 2.3 54 2-68 155-208 (241)
312 cd03276 ABC_SMC6_euk Eukaryoti 69.5 11 0.00024 25.5 4.3 51 7-69 129-180 (198)
313 PF03215 Rad17: Rad17 cell cyc 69.4 56 0.0012 26.0 9.1 82 8-101 131-227 (519)
314 cd03247 ABCC_cytochrome_bd The 69.4 12 0.00027 24.6 4.4 52 2-68 109-160 (178)
315 TIGR01188 drrA daunorubicin re 69.3 14 0.00031 26.7 5.0 53 2-68 135-187 (302)
316 COG1373 Predicted ATPase (AAA+ 69.1 46 0.00099 25.4 7.8 79 9-105 94-185 (398)
317 PRK10253 iron-enterobactin tra 68.9 4.8 0.0001 28.5 2.4 54 2-68 154-207 (265)
318 PF06144 DNA_pol3_delta: DNA p 68.9 4.2 9.1E-05 26.5 2.0 41 79-119 116-157 (172)
319 COG1135 AbcC ABC-type metal io 68.8 5.9 0.00013 29.3 2.9 18 3-20 153-170 (339)
320 PRK09984 phosphonate/organopho 68.8 3.9 8.5E-05 28.8 2.0 54 2-68 163-216 (262)
321 cd03301 ABC_MalK_N The N-termi 68.7 3.9 8.5E-05 27.7 1.9 54 2-68 141-194 (213)
322 PRK10938 putative molybdenum t 68.6 17 0.00037 28.2 5.6 55 2-69 412-466 (490)
323 cd03257 ABC_NikE_OppD_transpor 68.1 4.4 9.6E-05 27.7 2.1 54 2-68 156-209 (228)
324 PRK11701 phnK phosphonate C-P 67.8 4.7 0.0001 28.3 2.2 55 2-69 162-216 (258)
325 PRK13645 cbiO cobalt transport 67.8 4.4 9.6E-05 29.1 2.1 54 2-68 161-214 (289)
326 TIGR02746 TraC-F-type type-IV 67.7 5.3 0.00011 32.9 2.8 67 8-87 636-707 (797)
327 COG1674 FtsK DNA segregation A 67.7 5.2 0.00011 33.5 2.7 78 7-97 637-715 (858)
328 PRK10418 nikD nickel transport 67.7 4.2 9.1E-05 28.6 2.0 54 2-68 151-204 (254)
329 TIGR01189 ccmA heme ABC export 67.6 25 0.00055 23.5 5.7 52 3-68 139-190 (198)
330 cd03214 ABC_Iron-Siderophores_ 67.3 5.1 0.00011 26.5 2.2 54 2-68 108-161 (180)
331 PRK13648 cbiO cobalt transport 67.2 7.3 0.00016 27.6 3.1 54 2-68 153-206 (269)
332 KOG0991|consensus 67.2 13 0.00029 26.7 4.2 73 10-101 114-186 (333)
333 PRK10575 iron-hydroxamate tran 67.1 5.6 0.00012 28.2 2.5 54 2-68 158-211 (265)
334 cd01124 KaiC KaiC is a circadi 67.1 26 0.00056 22.9 5.6 20 4-23 90-109 (187)
335 PRK15115 response regulator Gl 67.1 20 0.00044 27.3 5.7 78 10-101 229-323 (444)
336 TIGR03411 urea_trans_UrtD urea 67.0 15 0.00033 25.4 4.7 53 2-69 154-206 (242)
337 COG4619 ABC-type uncharacteriz 66.8 12 0.00026 25.6 3.8 61 7-86 149-209 (223)
338 PRK13536 nodulation factor exp 66.7 15 0.00033 27.3 4.8 53 2-68 183-235 (340)
339 TIGR02315 ABC_phnC phosphonate 66.7 5.1 0.00011 27.8 2.2 54 2-68 156-209 (243)
340 cd03293 ABC_NrtD_SsuB_transpor 66.7 5.2 0.00011 27.4 2.2 54 2-68 142-195 (220)
341 PRK13632 cbiO cobalt transport 66.7 6.6 0.00014 27.9 2.8 54 2-68 153-206 (271)
342 cd03251 ABCC_MsbA MsbA is an e 66.5 16 0.00035 25.1 4.7 52 2-68 149-200 (234)
343 KOG0482|consensus 66.3 1.9 4E-05 34.1 -0.1 44 55-100 482-539 (721)
344 cd03297 ABC_ModC_molybdenum_tr 66.3 4.3 9.3E-05 27.6 1.7 54 2-68 142-195 (214)
345 cd03265 ABC_DrrA DrrA is the A 66.3 5.6 0.00012 27.2 2.3 54 2-68 142-195 (220)
346 cd03259 ABC_Carb_Solutes_like 66.2 4.5 9.8E-05 27.5 1.8 54 2-68 141-194 (213)
347 PRK13635 cbiO cobalt transport 66.2 5.8 0.00013 28.4 2.4 54 2-68 151-204 (279)
348 cd03296 ABC_CysA_sulfate_impor 66.2 4.8 0.0001 27.9 2.0 53 2-67 147-199 (239)
349 cd03253 ABCC_ATM1_transporter 66.1 12 0.00026 25.8 3.9 52 2-68 148-199 (236)
350 cd03228 ABCC_MRP_Like The MRP 66.0 11 0.00024 24.7 3.6 53 2-69 107-159 (171)
351 PRK15112 antimicrobial peptide 65.9 5 0.00011 28.5 2.1 54 2-68 160-213 (267)
352 PF02463 SMC_N: RecF/RecN/SMC 65.9 6.1 0.00013 26.9 2.5 20 5-24 154-173 (220)
353 COG1221 PspF Transcriptional r 65.8 19 0.00041 27.6 5.1 78 11-101 175-265 (403)
354 TIGR01184 ntrCD nitrate transp 65.8 5.7 0.00012 27.5 2.3 54 2-68 125-178 (230)
355 COG1117 PstB ABC-type phosphat 65.5 27 0.00058 24.8 5.4 47 3-63 161-207 (253)
356 PRK09544 znuC high-affinity zi 65.5 5.1 0.00011 28.3 2.0 54 2-68 131-184 (251)
357 TIGR01288 nodI ATP-binding ABC 65.5 18 0.00039 26.2 4.9 53 2-68 146-198 (303)
358 TIGR03522 GldA_ABC_ATP gliding 65.4 20 0.00043 26.0 5.1 52 2-68 144-195 (301)
359 PF00270 DEAD: DEAD/DEAH box h 65.2 7.7 0.00017 24.8 2.7 15 10-24 120-134 (169)
360 cd03244 ABCC_MRP_domain2 Domai 65.2 18 0.00038 24.6 4.7 52 2-68 150-201 (221)
361 PRK13634 cbiO cobalt transport 65.1 5.5 0.00012 28.7 2.2 54 2-68 156-209 (290)
362 PRK10820 DNA-binding transcrip 65.0 68 0.0015 25.4 8.5 13 10-22 299-311 (520)
363 cd01128 rho_factor Transcripti 65.0 23 0.00051 25.1 5.3 57 8-64 102-166 (249)
364 cd03295 ABC_OpuCA_Osmoprotecti 64.9 4.9 0.00011 28.0 1.8 54 2-68 146-199 (242)
365 cd03263 ABC_subfamily_A The AB 64.8 7.9 0.00017 26.4 2.8 53 2-69 144-196 (220)
366 PRK13641 cbiO cobalt transport 64.8 18 0.00038 26.0 4.7 53 2-68 156-208 (287)
367 PRK13652 cbiO cobalt transport 64.8 6.7 0.00014 28.0 2.5 54 2-68 148-201 (277)
368 PRK10771 thiQ thiamine transpo 64.6 5.5 0.00012 27.5 2.1 54 2-68 140-193 (232)
369 COG4598 HisP ABC-type histidin 64.5 9.9 0.00021 26.3 3.1 47 3-62 164-210 (256)
370 TIGR03005 ectoine_ehuA ectoine 64.4 6.6 0.00014 27.5 2.4 54 2-68 157-210 (252)
371 TIGR02314 ABC_MetN D-methionin 64.4 5.8 0.00013 29.5 2.2 54 2-68 151-204 (343)
372 COG1134 TagH ABC-type polysacc 64.4 7.6 0.00016 27.7 2.6 19 2-20 158-176 (249)
373 TIGR02769 nickel_nikE nickel i 64.4 6 0.00013 28.0 2.2 54 2-68 161-214 (265)
374 cd03238 ABC_UvrA The excision 64.3 11 0.00024 25.2 3.4 64 2-86 98-163 (176)
375 COG5245 DYN1 Dynein, heavy cha 64.3 14 0.0003 33.9 4.5 47 54-103 1610-1661(3164)
376 cd03268 ABC_BcrA_bacitracin_re 64.3 7.4 0.00016 26.3 2.6 53 2-68 137-189 (208)
377 cd03225 ABC_cobalt_CbiO_domain 64.0 7.3 0.00016 26.4 2.5 53 2-68 145-197 (211)
378 cd03258 ABC_MetN_methionine_tr 63.8 6.2 0.00013 27.2 2.2 54 2-68 151-204 (233)
379 PF13175 AAA_15: AAA ATPase do 63.7 13 0.00027 27.7 4.0 43 12-67 372-414 (415)
380 PRK10419 nikE nickel transport 63.5 5.5 0.00012 28.3 1.9 54 2-68 162-215 (268)
381 TIGR02982 heterocyst_DevA ABC 63.4 10 0.00022 26.0 3.1 20 2-21 152-171 (220)
382 cd01394 radB RadB. The archaea 63.4 6.2 0.00013 26.9 2.1 83 9-92 103-192 (218)
383 PRK11823 DNA repair protein Ra 63.3 46 0.00099 25.8 6.9 24 2-25 149-172 (446)
384 cd03261 ABC_Org_Solvent_Resist 63.3 6.6 0.00014 27.1 2.2 54 2-68 147-200 (235)
385 PRK13646 cbiO cobalt transport 63.3 5.5 0.00012 28.6 1.9 54 2-68 156-209 (286)
386 PRK11153 metN DL-methionine tr 63.2 6.3 0.00014 29.2 2.2 54 2-68 151-204 (343)
387 cd03213 ABCG_EPDR ABCG transpo 63.1 15 0.00033 24.6 4.0 19 2-20 122-140 (194)
388 TIGR03783 Bac_Flav_CT_G Bacter 63.1 9.9 0.00021 31.9 3.5 67 8-89 664-736 (829)
389 cd01122 GP4d_helicase GP4d_hel 63.0 6.1 0.00013 27.9 2.1 20 5-24 136-155 (271)
390 smart00487 DEXDc DEAD-like hel 63.0 11 0.00023 24.4 3.1 14 10-23 130-143 (201)
391 cd00984 DnaB_C DnaB helicase C 62.9 10 0.00022 26.2 3.1 53 5-63 119-171 (242)
392 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 62.9 7.3 0.00016 26.9 2.4 54 2-69 153-206 (224)
393 PF02702 KdpD: Osmosensitive K 62.8 11 0.00025 26.1 3.2 76 3-93 77-170 (211)
394 PRK14250 phosphate ABC transpo 62.7 6.3 0.00014 27.4 2.1 54 2-68 142-195 (241)
395 PRK09183 transposase/IS protei 62.5 11 0.00023 26.9 3.2 14 8-21 163-176 (259)
396 cd03223 ABCD_peroxisomal_ALDP 62.1 41 0.00089 21.9 6.5 19 2-20 102-120 (166)
397 PRK08181 transposase; Validate 62.1 11 0.00024 27.1 3.2 15 8-22 166-180 (269)
398 PHA00350 putative assembly pro 62.1 13 0.00029 28.4 3.7 67 9-81 81-159 (399)
399 PRK10247 putative ABC transpor 62.0 9 0.0002 26.3 2.7 18 2-19 148-165 (225)
400 cd03246 ABCC_Protease_Secretio 62.0 18 0.00038 23.8 4.0 53 2-68 107-159 (173)
401 PRK13650 cbiO cobalt transport 61.8 7 0.00015 28.0 2.2 54 2-68 151-204 (279)
402 cd03292 ABC_FtsE_transporter F 61.7 15 0.00033 24.8 3.8 53 2-68 147-199 (214)
403 PF07034 ORC3_N: Origin recogn 61.7 38 0.00083 25.0 6.1 78 9-102 199-281 (330)
404 cd03235 ABC_Metallic_Cations A 61.6 8.2 0.00018 26.2 2.4 53 2-68 143-195 (213)
405 PF11796 DUF3323: Protein of u 61.5 21 0.00046 24.6 4.5 54 76-129 1-58 (215)
406 PRK14245 phosphate ABC transpo 61.3 23 0.0005 24.7 4.7 52 2-68 157-208 (250)
407 cd03294 ABC_Pro_Gly_Bertaine T 61.2 7.7 0.00017 27.6 2.3 54 2-68 171-224 (269)
408 TIGR03410 urea_trans_UrtE urea 60.9 7.9 0.00017 26.6 2.3 54 2-68 142-195 (230)
409 KOG0479|consensus 60.7 19 0.00042 29.3 4.5 79 10-101 399-499 (818)
410 PF04665 Pox_A32: Poxvirus A32 60.7 58 0.0013 23.1 6.9 73 9-100 98-170 (241)
411 cd03229 ABC_Class3 This class 60.7 7.2 0.00016 25.8 2.0 54 2-68 111-164 (178)
412 cd03239 ABC_SMC_head The struc 60.5 11 0.00024 25.1 2.8 17 8-24 115-131 (178)
413 cd03300 ABC_PotA_N PotA is an 60.4 6.3 0.00014 27.2 1.7 54 2-68 141-194 (232)
414 PRK11831 putative ABC transpor 60.3 7.1 0.00015 27.7 2.0 54 2-68 154-207 (269)
415 TIGR03608 L_ocin_972_ABC putat 60.1 17 0.00036 24.5 3.7 51 2-66 145-195 (206)
416 PRK13636 cbiO cobalt transport 60.0 7.3 0.00016 28.0 2.0 54 2-68 152-205 (283)
417 TIGR00968 3a0106s01 sulfate AB 60.0 7.5 0.00016 27.0 2.0 53 3-68 142-194 (237)
418 TIGR02323 CP_lyasePhnK phospho 59.9 7.7 0.00017 27.1 2.1 55 2-69 159-213 (253)
419 PRK09493 glnQ glutamine ABC tr 59.7 18 0.0004 25.0 4.0 53 2-68 147-199 (240)
420 PRK13637 cbiO cobalt transport 59.3 8.3 0.00018 27.7 2.2 54 2-68 155-208 (287)
421 PF00158 Sigma54_activat: Sigm 59.2 28 0.0006 23.1 4.6 56 10-79 94-155 (168)
422 TIGR02673 FtsE cell division A 59.2 17 0.00036 24.6 3.6 53 2-68 148-200 (214)
423 cd03249 ABC_MTABC3_MDL1_MDL2 M 59.0 29 0.00062 23.9 4.9 52 2-68 150-201 (238)
424 PRK11248 tauB taurine transpor 59.0 8 0.00017 27.3 2.1 54 2-68 139-192 (255)
425 PRK14258 phosphate ABC transpo 59.0 7.8 0.00017 27.4 2.0 55 2-69 161-215 (261)
426 PRK11124 artP arginine transpo 58.7 19 0.00041 25.0 3.9 53 2-68 152-204 (242)
427 COG1127 Ttg2A ABC-type transpo 58.1 27 0.00059 25.1 4.5 17 2-18 156-172 (263)
428 PRK14243 phosphate transporter 58.0 12 0.00027 26.4 2.9 53 2-69 162-214 (264)
429 PRK11264 putative amino-acid A 57.6 22 0.00048 24.7 4.1 53 2-68 155-207 (250)
430 COG1126 GlnQ ABC-type polar am 57.4 17 0.00036 25.7 3.3 46 3-61 148-193 (240)
431 PRK10923 glnG nitrogen regulat 57.4 46 0.001 25.5 6.1 13 10-22 233-245 (469)
432 PRK13649 cbiO cobalt transport 57.3 18 0.00038 25.8 3.6 53 2-68 156-208 (280)
433 PRK13891 conjugal transfer pro 57.2 20 0.00044 30.1 4.4 69 5-88 683-756 (852)
434 cd03260 ABC_PstB_phosphate_tra 57.1 13 0.00029 25.4 2.9 51 3-68 153-203 (227)
435 PRK09536 btuD corrinoid ABC tr 57.1 27 0.00058 26.7 4.7 53 2-68 150-202 (402)
436 cd03219 ABC_Mj1267_LivG_branch 57.1 11 0.00025 25.9 2.6 53 2-68 154-206 (236)
437 PRK10895 lipopolysaccharide AB 57.1 19 0.00041 24.9 3.7 53 2-68 148-200 (241)
438 cd03369 ABCC_NFT1 Domain 2 of 56.9 19 0.00042 24.2 3.6 52 2-68 136-187 (207)
439 PRK14249 phosphate ABC transpo 56.8 31 0.00068 24.0 4.8 52 3-69 159-210 (251)
440 cd03250 ABCC_MRP_domain1 Domai 56.8 22 0.00048 23.9 3.9 18 3-20 139-156 (204)
441 PRK13633 cobalt transporter AT 56.7 12 0.00025 26.8 2.6 53 3-68 156-208 (280)
442 TIGR03269 met_CoM_red_A2 methy 56.6 10 0.00022 29.6 2.5 54 2-68 179-232 (520)
443 cd00267 ABC_ATPase ABC (ATP-bi 56.6 11 0.00023 24.3 2.2 53 3-69 92-144 (157)
444 PRK14251 phosphate ABC transpo 56.5 30 0.00066 24.1 4.7 52 2-68 158-209 (251)
445 PRK15056 manganese/iron transp 56.5 12 0.00026 26.6 2.6 53 2-68 153-205 (272)
446 cd03215 ABC_Carb_Monos_II This 56.3 23 0.00049 23.4 3.8 53 2-68 115-167 (182)
447 PRK09580 sufC cysteine desulfu 56.2 22 0.00047 24.7 3.9 53 2-68 156-208 (248)
448 cd01393 recA_like RecA is a b 56.1 11 0.00024 25.7 2.3 58 7-65 112-169 (226)
449 PRK14260 phosphate ABC transpo 56.1 14 0.0003 26.0 2.9 53 2-69 161-213 (259)
450 cd03237 ABC_RNaseL_inhibitor_d 56.0 8.8 0.00019 27.0 1.9 54 2-68 126-179 (246)
451 cd03266 ABC_NatA_sodium_export 55.8 22 0.00047 24.2 3.7 53 2-68 147-199 (218)
452 TIGR03744 traC_PFL_4706 conjug 55.4 4.9 0.00011 33.8 0.6 66 8-88 732-800 (893)
453 PRK11022 dppD dipeptide transp 55.3 10 0.00022 27.9 2.2 54 2-68 164-217 (326)
454 PRK13642 cbiO cobalt transport 55.3 11 0.00025 26.8 2.4 19 2-20 151-169 (277)
455 PRK10584 putative ABC transpor 55.2 11 0.00023 25.9 2.2 54 2-68 157-210 (228)
456 PRK14253 phosphate ABC transpo 55.1 12 0.00027 26.0 2.5 52 2-68 156-207 (249)
457 PRK14269 phosphate ABC transpo 55.1 16 0.00035 25.5 3.1 52 2-68 153-204 (246)
458 cd03224 ABC_TM1139_LivF_branch 54.9 22 0.00048 24.2 3.7 52 3-68 144-195 (222)
459 PRK11247 ssuB aliphatic sulfon 54.9 10 0.00023 26.8 2.1 54 2-68 144-197 (257)
460 COG2884 FtsE Predicted ATPase 54.9 62 0.0013 22.6 5.6 53 3-69 149-201 (223)
461 PRK13647 cbiO cobalt transport 54.9 20 0.00043 25.6 3.6 53 2-68 149-201 (274)
462 PRK15093 antimicrobial peptide 54.7 10 0.00023 27.9 2.1 54 2-68 169-222 (330)
463 cd03279 ABC_sbcCD SbcCD and ot 54.7 15 0.00033 25.0 2.9 46 9-68 151-196 (213)
464 cd03269 ABC_putative_ATPase Th 54.6 20 0.00043 24.2 3.4 53 2-68 139-191 (210)
465 cd03281 ABC_MSH5_euk MutS5 hom 54.5 50 0.0011 22.7 5.4 57 6-72 105-161 (213)
466 cd03222 ABC_RNaseL_inhibitor T 54.4 13 0.00027 24.9 2.3 18 3-20 83-100 (177)
467 cd03245 ABCC_bacteriocin_expor 54.4 28 0.0006 23.7 4.1 50 2-66 151-200 (220)
468 PRK11614 livF leucine/isoleuci 54.3 21 0.00045 24.7 3.5 53 2-68 148-200 (237)
469 PRK13651 cobalt transporter AT 54.2 20 0.00043 26.2 3.5 53 2-68 176-228 (305)
470 PRK13898 type IV secretion sys 54.0 17 0.00037 30.3 3.4 69 7-90 640-713 (800)
471 KOG0058|consensus 53.9 22 0.00047 29.3 3.8 20 3-22 616-635 (716)
472 PF12774 AAA_6: Hydrolytic ATP 53.7 75 0.0016 22.3 6.3 38 56-96 135-176 (231)
473 cd03248 ABCC_TAP TAP, the Tran 53.5 33 0.00072 23.4 4.4 51 3-68 162-212 (226)
474 PRK13640 cbiO cobalt transport 53.3 13 0.00028 26.6 2.4 54 2-68 154-207 (282)
475 PRK13643 cbiO cobalt transport 53.2 23 0.00051 25.4 3.7 53 2-68 155-207 (288)
476 PRK13765 ATP-dependent proteas 53.2 65 0.0014 26.4 6.4 44 55-100 277-328 (637)
477 PRK10938 putative molybdenum t 53.0 33 0.00073 26.6 4.8 53 2-68 146-198 (490)
478 TIGR02142 modC_ABC molybdenum 53.0 12 0.00027 27.8 2.3 54 2-68 142-195 (354)
479 TIGR01978 sufC FeS assembly AT 52.8 26 0.00057 24.2 3.8 53 2-68 155-207 (243)
480 cd03221 ABCF_EF-3 ABCF_EF-3 E 52.7 30 0.00065 22.0 3.8 19 3-21 82-100 (144)
481 PRK13638 cbiO cobalt transport 52.6 22 0.00047 25.2 3.4 53 2-68 147-199 (271)
482 PRK13639 cbiO cobalt transport 52.5 26 0.00055 25.0 3.8 53 2-68 148-200 (275)
483 PRK09694 helicase Cas3; Provis 52.5 38 0.00082 28.8 5.2 15 7-21 437-451 (878)
484 smart00534 MUTSac ATPase domai 52.5 18 0.00039 24.1 2.9 13 8-20 77-89 (185)
485 PRK09452 potA putrescine/sperm 52.4 12 0.00026 28.3 2.1 19 2-20 155-173 (375)
486 PRK13644 cbiO cobalt transport 52.4 25 0.00054 25.1 3.7 53 2-68 147-199 (274)
487 PRK14247 phosphate ABC transpo 52.3 20 0.00043 25.0 3.2 52 2-68 157-208 (250)
488 PRK13830 conjugal transfer pro 52.2 16 0.00034 30.6 2.9 66 8-88 651-721 (818)
489 PRK05022 anaerobic nitric oxid 51.8 38 0.00082 26.6 4.9 13 10-22 282-294 (509)
490 PRK11650 ugpC glycerol-3-phosp 51.6 13 0.00027 27.9 2.2 53 2-67 145-197 (356)
491 PRK13546 teichoic acids export 51.6 22 0.00047 25.3 3.3 53 2-68 154-206 (264)
492 COG1125 OpuBA ABC-type proline 51.4 48 0.001 24.2 4.9 70 3-88 147-221 (309)
493 PRK11308 dppF dipeptide transp 51.4 11 0.00024 27.8 1.8 54 2-68 165-218 (327)
494 PRK10908 cell division protein 51.3 26 0.00056 23.9 3.6 53 2-68 148-200 (222)
495 cd00983 recA RecA is a bacter 51.3 33 0.00071 25.5 4.2 64 5-68 129-195 (325)
496 TIGR03873 F420-0_ABC_ATP propo 51.0 28 0.00062 24.4 3.8 53 2-68 148-200 (256)
497 COG3451 VirB4 Type IV secretor 50.8 11 0.00023 31.5 1.8 70 8-92 633-707 (796)
498 PRK13549 xylose transporter AT 50.8 39 0.00084 26.4 4.8 53 2-68 416-468 (506)
499 cd03264 ABC_drug_resistance_li 50.7 24 0.00052 23.8 3.3 52 2-68 141-192 (211)
500 cd03241 ABC_RecN RecN ATPase i 50.7 48 0.001 23.6 5.0 43 9-66 192-234 (276)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=222.73 Aligned_cols=131 Identities=68% Similarity=1.106 Sum_probs=127.1
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++||||||||+|++..+|...+.+...+.++++.++|++|||+...++|-||++||+++-+|||++||||||+
T Consensus 236 lF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR 315 (406)
T COG1222 236 LFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDR 315 (406)
T ss_pred HHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccc
Confidence 59999999999999999999999998888888889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+||+|+.+.|.+||+.+.+.+.+..++||..+|..|+|+|||||+++|+
T Consensus 316 kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 316 KIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICT 366 (406)
T ss_pred eeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984
No 2
>KOG0730|consensus
Probab=100.00 E-value=1.7e-35 Score=224.02 Aligned_cols=128 Identities=45% Similarity=0.735 Sum_probs=120.5
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|++|++.+||||||||+|++...|+..+. ....++++++|++|||+....+|+|||+||+|+.||+|++||||||+
T Consensus 519 iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~ 595 (693)
T KOG0730|consen 519 VFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDR 595 (693)
T ss_pred HHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccce
Confidence 599999999999999999999999963333 44568999999999999888999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++|+|+.+.|.+||+.++++.++.+++|+..||+.|+||||+||..+|+
T Consensus 596 iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 596 IIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred eEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999995
No 3
>KOG0734|consensus
Probab=100.00 E-value=1.4e-34 Score=215.44 Aligned_cols=128 Identities=41% Similarity=0.655 Sum_probs=119.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|++++||||||||+|++..+|.+ .+ .. ...++++++|.+||++..+.+|+|||+||.|+.+|+++.||||||+
T Consensus 388 LF~aAk~~APcIIFIDEiDavG~kR~~-~~-~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~ 464 (752)
T KOG0734|consen 388 LFAAAKARAPCIIFIDEIDAVGGKRNP-SD-QH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDR 464 (752)
T ss_pred HHHHHHhcCCeEEEEechhhhcccCCc-cH-HH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccce
Confidence 599999999999999999999998832 22 22 7789999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+|.+|.||...|.+||++|+++.....++|+.-+|.-|.||+|+||+.|+|
T Consensus 465 ~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 465 HVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred eEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985
No 4
>KOG0733|consensus
Probab=100.00 E-value=4.1e-34 Score=215.29 Aligned_cols=128 Identities=37% Similarity=0.639 Sum_probs=118.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|++||.++||||||||+|+|++.|+... .....++++++|.+|||+....+|+|||+||+|+-||||++||||||+
T Consensus 596 vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk 672 (802)
T KOG0733|consen 596 VFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDK 672 (802)
T ss_pred HHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCc
Confidence 69999999999999999999999996544 334568999999999999888999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhc--CCCCCCcccHHHHHHHcC--CCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIMAKD--DLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~--~~~~~~~~~~~~la~~t~--g~s~~di~~l~~ 131 (131)
.+++++|+.++|.+||+..++ +.++..++|++++|..+. ||||+||..||+
T Consensus 673 ~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 673 LLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 999999999999999999999 667779999999999976 999999999984
No 5
>KOG0733|consensus
Probab=99.98 E-value=2.9e-32 Score=205.40 Aligned_cols=128 Identities=40% Similarity=0.638 Sum_probs=116.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC----CCeEEEeeCCCCCcccccccCCC
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR----GDVKVIMATNRIETLDPALIRPG 76 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~v~vi~ttn~~~~id~~l~~~g 76 (131)
+|+.|+.++|||+||||+|++.++|...+...+ .+++.++++.||++... .+|+|||+||+|+++|++++|+|
T Consensus 274 lF~~A~~~aPcivFiDeIDAI~pkRe~aqreME---rRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaG 350 (802)
T KOG0733|consen 274 LFDQAKSNAPCIVFIDEIDAITPKREEAQREME---RRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAG 350 (802)
T ss_pred HHHHHhccCCeEEEeecccccccchhhHHHHHH---HHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccc
Confidence 699999999999999999999999966555444 46777888888887554 57999999999999999999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
|||+.|.++.|++.+|.+||+..+++..+..++|+..||..|.||.|+||.+||.
T Consensus 351 RFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 351 RFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred cccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999983
No 6
>KOG0738|consensus
Probab=99.97 E-value=3.4e-32 Score=196.39 Aligned_cols=127 Identities=38% Similarity=0.584 Sum_probs=117.1
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC-CC---eEEEeeCCCCCcccccccCCC
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GD---VKVIMATNRIETLDPALIRPG 76 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---v~vi~ttn~~~~id~~l~~~g 76 (131)
+|+.|+.++|++|||||||+|+..|++. ..+....++.+++|.+||++... .. |+|+|+||.||.||++++|
T Consensus 296 LFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR-- 371 (491)
T KOG0738|consen 296 LFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR-- 371 (491)
T ss_pred HHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--
Confidence 5999999999999999999999999543 44555678999999999998665 33 9999999999999999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
||+++|++|+|+.+.|..+++..++.....+++++..+++.++||||+||..+|+
T Consensus 372 RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 372 RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999985
No 7
>KOG0736|consensus
Probab=99.97 E-value=4.7e-31 Score=202.67 Aligned_cols=130 Identities=38% Similarity=0.643 Sum_probs=119.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC--CCCeEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
||++||..+|||||+||+|++.++|+..++... -+.++++++|.++|++.. ..+|+|||+||+|+.|||+++|||||
T Consensus 756 VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRF 834 (953)
T KOG0736|consen 756 VFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRF 834 (953)
T ss_pred HHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCcc
Confidence 699999999999999999999999976655443 467899999999999985 46899999999999999999999999
Q ss_pred ceEEEeCCC-CHHHHHHHHHHHhcCCCCCCcccHHHHHHHc-CCCCHHHHHHhhC
Q psy522 79 DRKIEFPLP-DEKTKRRIFNIHTSRMTLAEDVNLQELIMAK-DDLSGADIKAICT 131 (131)
Q Consensus 79 ~~~i~~~~P-~~~~R~~il~~~l~~~~~~~~~~~~~la~~t-~g~s~~di~~l~~ 131 (131)
|+.++++++ +.+.+..+++...+++.+++++|+.++|+.+ ..|||||+.+||.
T Consensus 835 DKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 835 DKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCS 889 (953)
T ss_pred ceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHH
Confidence 999999998 8999999999999999999999999999997 6899999999983
No 8
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=9.8e-30 Score=188.33 Aligned_cols=131 Identities=60% Similarity=1.046 Sum_probs=119.5
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|+.++|+||||||+|.++.++..............+.+++..++++....+++||+|||+++.+|++++||||||+
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~ 309 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDR 309 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccE
Confidence 48899999999999999999998875554444555677889999999998777889999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++++|+.++|..||+.++.+.++..++++..++..|+||||+||+++|+
T Consensus 310 ~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 310 KIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999988888999999999999999999999984
No 9
>KOG0735|consensus
Probab=99.96 E-value=1.5e-29 Score=193.32 Aligned_cols=127 Identities=35% Similarity=0.644 Sum_probs=118.2
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|++|+..+|||+|+||+|++.++|+..+.+.. .++++++|++|||...-++|+++|+|.+|+.||||++||||+|+
T Consensus 752 lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~ 828 (952)
T KOG0735|consen 752 LFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDK 828 (952)
T ss_pred HHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccce
Confidence 599999999999999999999999966555443 46899999999998887999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.++.+.|++.+|.+|++.+........+.|+..+|..|+||||+||..|+
T Consensus 829 ~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 829 LVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred eeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHH
Confidence 99999999999999999999988888999999999999999999999876
No 10
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-29 Score=192.06 Aligned_cols=131 Identities=46% Similarity=0.744 Sum_probs=121.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|++|++++||||||||+|++...|+..........-++++++|.+||++..+.+|+++++||+|+-+|++++||||||+
T Consensus 234 LF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDR 313 (596)
T COG0465 234 LFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDR 313 (596)
T ss_pred HHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcce
Confidence 59999999999999999999999986554444445568999999999999888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+|.++.|+...|.+|++-+.++.++.+++|+..+|..|.||+++|++.+++
T Consensus 314 qI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 314 QILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred eeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHH
Confidence 999999999999999999999999999999999999999999999999874
No 11
>KOG0728|consensus
Probab=99.96 E-value=3.4e-29 Score=173.17 Aligned_cols=131 Identities=58% Similarity=1.004 Sum_probs=125.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|-.|++++|||||.||+|++...|.+.+.+..++..+++.++++++|++....++-||.+||+.+-+|++++||||+|+
T Consensus 232 lfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridr 311 (404)
T KOG0728|consen 232 LFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDR 311 (404)
T ss_pred HHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccc
Confidence 48899999999999999999999998877777888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+||+|+.+.|.+|++.+.+..++...+++..+|+...|.||++++.+|+
T Consensus 312 kiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 312 KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred cccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 999999999999999999999999999999999999999999999999884
No 12
>KOG0731|consensus
Probab=99.96 E-value=8.8e-29 Score=191.63 Aligned_cols=131 Identities=47% Similarity=0.802 Sum_probs=119.0
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCC-CCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYD-SNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|..||.++|||||+||+|++...|+. .....+.+-.+.++++|.+||+...+..|+|+++||+++-+|++++||||||
T Consensus 395 lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfd 474 (774)
T KOG0731|consen 395 LFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFD 474 (774)
T ss_pred HHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccc
Confidence 599999999999999999999999842 2223334455899999999999988888999999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
++|+++.|+..+|..|++.+++..+.. +++++..+|..|.||+|+||..+|+
T Consensus 475 r~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 475 RQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred cceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 999999999999999999999999886 7788999999999999999999986
No 13
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.8e-28 Score=193.62 Aligned_cols=129 Identities=47% Similarity=0.772 Sum_probs=116.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+..+||||||||+|.+++.++..... .....++++++..++++...++++||+|||+|+.||++++||||||+
T Consensus 538 ~f~~A~~~~p~iifiDEid~l~~~r~~~~~~--~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~ 615 (733)
T TIGR01243 538 IFRKARQAAPAIIFFDEIDAIAPARGARFDT--SVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDR 615 (733)
T ss_pred HHHHHHhcCCEEEEEEChhhhhccCCCCCCc--cHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccce
Confidence 5899999999999999999999888543222 23457888999999999888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+++++|+.++|.+||+.++++.+...++++..+|..|+||||+||+.+|+
T Consensus 616 ~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999988888899999999999999999999874
No 14
>KOG0739|consensus
Probab=99.96 E-value=9.7e-30 Score=179.08 Aligned_cols=125 Identities=34% Similarity=0.569 Sum_probs=110.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC-CCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|+.||+++||||||||+|.++..++++.+. ...++..+||.+|.++-.. ++|+|+|+||-||.+|.+++| ||+
T Consensus 217 LFemARe~kPSIIFiDEiDslcg~r~enEse---asRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFe 291 (439)
T KOG0739|consen 217 LFEMARENKPSIIFIDEIDSLCGSRSENESE---ASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFE 291 (439)
T ss_pred HHHHHHhcCCcEEEeehhhhhccCCCCCchH---HHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--Hhh
Confidence 5999999999999999999999988554333 3467889999999998665 689999999999999999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
++|++|+|+...|..||+.++...+.. .+.|+.+|+..|+||||+||.-++
T Consensus 292 kRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivV 343 (439)
T KOG0739|consen 292 KRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVV 343 (439)
T ss_pred cceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEe
Confidence 999999999999999999998876654 567899999999999999987554
No 15
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=3.8e-28 Score=179.97 Aligned_cols=131 Identities=60% Similarity=1.018 Sum_probs=118.6
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++|+||||||+|.++.++..............+..++..++++...+++.||+|||.++.+|++++|||||+.
T Consensus 216 ~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~ 295 (389)
T PRK03992 216 LFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDR 295 (389)
T ss_pred HHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCce
Confidence 48889999999999999999998876554444455667888899999988777899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++++|+.++|.+||+.++++..+..+.++..++..|+||+|+||+.+|+
T Consensus 296 ~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 296 IIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred EEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999988888899999999999999999999984
No 16
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=2.7e-28 Score=185.59 Aligned_cols=131 Identities=44% Similarity=0.723 Sum_probs=117.4
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++|+||||||+|.++.+++.............++.++..++++...++++||+|||.++.+|++++||||||+
T Consensus 139 ~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~ 218 (495)
T TIGR01241 139 LFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDR 218 (495)
T ss_pred HHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceE
Confidence 48899999999999999999998875433333344557888999999999888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+++.|+.++|.+|++.+++......+.++..++..|.|||++||+.+|+
T Consensus 219 ~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 219 QVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999887777889999999999999999999874
No 17
>KOG0652|consensus
Probab=99.96 E-value=2e-28 Score=170.16 Aligned_cols=129 Identities=60% Similarity=1.045 Sum_probs=123.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceE
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRK 81 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~ 81 (131)
|..|+..+|+||||||+|++..+|-...........+.+.++++++|++++...|-||++||+.+-+||+++|.||+|+.
T Consensus 257 FaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRK 336 (424)
T KOG0652|consen 257 FALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRK 336 (424)
T ss_pred HHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhccccccc
Confidence 88999999999999999999999976666777788899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
|+||.|+.+.|..|++.+.++....+++++.++|..|++|.|++.+++|
T Consensus 337 IEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 337 IEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred ccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence 9999999999999999999999999999999999999999999998876
No 18
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=3.7e-28 Score=189.30 Aligned_cols=131 Identities=40% Similarity=0.715 Sum_probs=118.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+..+||||||||+|.++..++...........+.++.++..++++....+++||+|||+|+.+|++++||||||+
T Consensus 236 ~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr 315 (644)
T PRK10733 236 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 315 (644)
T ss_pred HHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccce
Confidence 47889999999999999999998876543334444567889999999999888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.++++.|+.++|.+||+.+++..++..+.++..++..|.|||++||..+|+
T Consensus 316 ~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 316 QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred EEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 999999999999999999999998888899999999999999999999984
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.95 E-value=5.1e-28 Score=182.78 Aligned_cols=127 Identities=25% Similarity=0.452 Sum_probs=108.1
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++||||||||+|.++..+...++ .....+++..++..++. .+.+++||+|||+++.+|++++|+||||+
T Consensus 310 ~f~~A~~~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~ 385 (489)
T CHL00195 310 MIRIAEALSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDE 385 (489)
T ss_pred HHHHHHhcCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCe
Confidence 488899999999999999999876533222 22345677788877774 45689999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC--CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLA--EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~--~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.++++.|+.++|.+||+.++.+.... .+.++..+|..|+||||+||+++|+
T Consensus 386 ~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 386 IFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999999886543 4788999999999999999999873
No 20
>KOG0726|consensus
Probab=99.95 E-value=6.9e-29 Score=174.42 Aligned_cols=131 Identities=95% Similarity=1.380 Sum_probs=125.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|..++|||+||||+|++..+|-..++..+.+..+.+.++|+++|++.+.+.|-||.+||..+++||++.||||+|+
T Consensus 270 lF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDr 349 (440)
T KOG0726|consen 270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 349 (440)
T ss_pred HHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCcccc
Confidence 59999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|.|+.|+...++.||..+..+..+..++++.++...-+-+||+||+++|.
T Consensus 350 KIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 350 KIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred ccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999984
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.5e-28 Score=183.52 Aligned_cols=128 Identities=48% Similarity=0.727 Sum_probs=115.7
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|++.+||||||||+|++++.++....... ..++.+++..++++....+|+||++||.|+.+|++++||||||.
T Consensus 327 ~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~ 403 (494)
T COG0464 327 LFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDR 403 (494)
T ss_pred HHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccce
Confidence 599999999999999999999999854433332 57899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCC--CCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTL--AEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~--~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+++++|+.++|.+||+.++.+... ..++++..++..|+||+++||+.+|+
T Consensus 404 ~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 404 LIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred EeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999999999996554 47899999999999999999999874
No 22
>KOG0727|consensus
Probab=99.95 E-value=4.3e-28 Score=167.90 Aligned_cols=131 Identities=62% Similarity=1.077 Sum_probs=125.4
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|++++|+||||||+|++..+|=..+.+...+..+++.+++++||++...-+|-||.+||+.+.+||+++||||+|+
T Consensus 240 vfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldr 319 (408)
T KOG0727|consen 240 VFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDR 319 (408)
T ss_pred HHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccc
Confidence 59999999999999999999999997777777888899999999999999988999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+||.|++.+++-+|.....++.+.+++|+.++..+.+..|++||.++|+
T Consensus 320 kiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 320 KIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred cccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999985
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=178.33 Aligned_cols=131 Identities=90% Similarity=1.328 Sum_probs=118.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|+.++|+||||||+|.++.++..............+.+++..++++....++.||+|||+++.+|++++||||||.
T Consensus 268 lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~ 347 (438)
T PTZ00361 268 LFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDR 347 (438)
T ss_pred HHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEE
Confidence 48889999999999999999998876554555555667888999999998777889999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+|+.|+.++|.+||+.++.+..+..++++..++..++|||++||+.+|+
T Consensus 348 ~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 348 KIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999988888899999999999999999999984
No 24
>KOG0737|consensus
Probab=99.95 E-value=8.5e-28 Score=172.61 Aligned_cols=126 Identities=35% Similarity=0.591 Sum_probs=116.5
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCC--eEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD--VKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--v~vi~ttn~~~~id~~l~~~grf 78 (131)
+|..|.+.+||||||||+|.++..| +...+.....+.++|...+||+.++++ |+|+|+||+|..+|.+++| |+
T Consensus 178 vFslAsKl~P~iIFIDEvds~L~~R---~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~ 252 (386)
T KOG0737|consen 178 VFSLASKLQPSIIFIDEVDSFLGQR---RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RL 252 (386)
T ss_pred HHhhhhhcCcceeehhhHHHHHhhc---ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hC
Confidence 5889999999999999999999888 244455666788899999999988865 9999999999999999999 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+.++++.|+.++|.+|++-+++..++.+++|++++|..|+||||+||+.+|+
T Consensus 253 p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 253 PRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred cceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=8.3e-28 Score=166.61 Aligned_cols=124 Identities=36% Similarity=0.582 Sum_probs=113.4
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|++|++.+|||+||||+|++.-.|.-.+- ......+++.+|+.||++.++.+|+.|++||.|+.+|+++++ ||+.
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQel--RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEe 277 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQEL--RGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEE 277 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHh--cccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhh
Confidence 488999999999999999999988743222 234668999999999999988999999999999999999999 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHH
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 128 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~ 128 (131)
.|+|.+|+.++|.+|+++|.+.+++.-+.++..++..|.|+|++||+.
T Consensus 278 EIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdike 325 (368)
T COG1223 278 EIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKE 325 (368)
T ss_pred eeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHH
Confidence 999999999999999999999999998889999999999999999975
No 26
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=2.7e-27 Score=194.96 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=102.4
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC---CCCCeEEEeeCCCCCcccccccCCCc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD---SRGDVKVIMATNRIETLDPALIRPGR 77 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~v~vi~ttn~~~~id~~l~~~gr 77 (131)
+|+.|++++||||||||+|++..+.. . ...+..+++.|++.. ...+|+||||||+|+.||||++||||
T Consensus 1724 lFelARk~SPCIIFIDEIDaL~~~ds-----~----~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGR 1794 (2281)
T CHL00206 1724 QFELAKAMSPCIIWIPNIHDLNVNES-----N----YLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNK 1794 (2281)
T ss_pred HHHHHHHCCCeEEEEEchhhcCCCcc-----c----eehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCC
Confidence 49999999999999999999986521 0 124677788888753 34689999999999999999999999
Q ss_pred cceEEEeCCCCHHHHHHHHHHHh--cCCCCCCc-ccHHHHHHHcCCCCHHHHHHhhC
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIHT--SRMTLAED-VNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~l--~~~~~~~~-~~~~~la~~t~g~s~~di~~l~~ 131 (131)
||+.|+++.|+..+|++++..++ ++.....+ .++..+|..|.|||||||+.||+
T Consensus 1795 FDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1795 LNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999988654 44444433 57999999999999999999985
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.94 E-value=4.7e-27 Score=182.17 Aligned_cols=131 Identities=44% Similarity=0.725 Sum_probs=118.0
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++||||||||+|.+...++.............+..++..++++....+++||++||+++.+|++++||||||+
T Consensus 267 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDR 346 (638)
T ss_pred HHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCce
Confidence 48899999999999999999998775544444455567889999999998888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+.+++|+.++|.+||+.+++......+.++..+|..|.||+++||+.+|+
T Consensus 347 ~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 347 QITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999999999999999877778889999999999999999999874
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=1.2e-25 Score=165.63 Aligned_cols=131 Identities=60% Similarity=0.980 Sum_probs=116.6
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++|+||||||+|.++..+..............+..++..++++...+++.||+|||.++.+|+++++||||+.
T Consensus 207 ~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~ 286 (364)
T TIGR01242 207 IFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDR 286 (364)
T ss_pred HHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCce
Confidence 37788999999999999999998775544444455667788899999988777889999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+++.|+.++|.+||+.++.......+.++..++..|+||+|+||..+|+
T Consensus 287 ~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 287 IIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999998888777789999999999999999999874
No 29
>KOG0740|consensus
Probab=99.92 E-value=1.8e-25 Score=164.77 Aligned_cols=126 Identities=37% Similarity=0.539 Sum_probs=109.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC--CCeEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
+|..|+..+|+|||+||+|.++.+|+....+. ..+...+++.++++.... ++|+||||||.||.+|.+++| ||
T Consensus 237 lf~vAr~~qPsvifidEidslls~Rs~~e~e~---srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf 311 (428)
T KOG0740|consen 237 LFKVARSLQPSVIFIDEIDSLLSKRSDNEHES---SRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RF 311 (428)
T ss_pred HHHHHHhcCCeEEEechhHHHHhhcCCccccc---chhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--Hh
Confidence 59999999999999999999999994332222 346777888888876544 589999999999999999999 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+.+++|.|+.+.|..+|..+++..+.. .+.++..+++.|+||+++||.++|.
T Consensus 312 ~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~k 365 (428)
T KOG0740|consen 312 VKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCK 365 (428)
T ss_pred hceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHH
Confidence 9999999999999999999999887443 5678999999999999999999984
No 30
>KOG0730|consensus
Probab=99.92 E-value=8.8e-25 Score=166.17 Aligned_cols=126 Identities=39% Similarity=0.658 Sum_probs=115.3
Q ss_pred CHHHHHhcC-CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHA-PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~-p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|++|..++ |++|||||+|.+++++..... ...++..+++..+++.....+++|+++||+|++||++++| ||||
T Consensus 269 ~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd 343 (693)
T KOG0730|consen 269 AFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFD 343 (693)
T ss_pred HHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCc
Confidence 489999999 999999999999999854433 3457888888889998878899999999999999999999 9999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+.+.++.|+..+|.+|++.+.+.++...+.++..+|..|.||+|+|+..+|+
T Consensus 344 ~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 344 REVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred ceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 9999999999999999999999999888899999999999999999999874
No 31
>KOG0729|consensus
Probab=99.91 E-value=9.7e-25 Score=152.30 Aligned_cols=131 Identities=53% Similarity=0.953 Sum_probs=123.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+..+-||||+||+|++...|=..+....++..+.+.++++++|++...+++-|+.+||+|+.+||+++||||+|+
T Consensus 262 lf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldr 341 (435)
T KOG0729|consen 262 LFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDR 341 (435)
T ss_pred HHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCccccc
Confidence 59999999999999999999999986666667788889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.++|.+|+-+.|..||+.+.+...+..++-|.-+|..+..-||+||.++|.
T Consensus 342 kvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 342 KVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred ceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 999999999999999999999998888888999999999999999999884
No 32
>KOG0732|consensus
Probab=99.91 E-value=4.6e-24 Score=169.51 Aligned_cols=128 Identities=43% Similarity=0.672 Sum_probs=112.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|++++|+|||+||+|.+.+.|+..+...+ ..+..++|..|+++...+.|+|||+||+|+.+|++++||||||+
T Consensus 355 lFeeA~k~qPSIIffdeIdGlapvrSskqEqih---~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdr 431 (1080)
T KOG0732|consen 355 LFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIH---ASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDR 431 (1080)
T ss_pred HHHHHhccCceEEeccccccccccccchHHHhh---hhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccce
Confidence 599999999999999999999999855444333 36788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+++++|+.+.|.+|+.....+-... ...-+..+|+.|.||-|+||+.+|+
T Consensus 432 ef~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 432 EFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred eEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999987765422 2334777999999999999999984
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.91 E-value=8.9e-24 Score=160.03 Aligned_cols=124 Identities=34% Similarity=0.479 Sum_probs=100.8
Q ss_pred CHHHHHhc----CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCC
Q psy522 1 LFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPG 76 (131)
Q Consensus 1 vF~~A~~~----~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~g 76 (131)
+|+.|+.. .|+||||||+|.++.+++...... ....++.+++..++++...++++||+|||+++.||++++|||
T Consensus 277 iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d--~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpG 354 (512)
T TIGR03689 277 IFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSD--VETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPG 354 (512)
T ss_pred HHHHHHHHhhcCCCceEEEehhhhhhcccCCCccch--HHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCcc
Confidence 46677664 799999999999998874332222 234677899999999988789999999999999999999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
|||..|++++|+.++|.+||+.++.... .+...+..+.|++++++..+|+
T Consensus 355 RfD~~I~~~~Pd~e~r~~Il~~~l~~~l-----~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 355 RLDVKIRIERPDAEAAADIFSKYLTDSL-----PLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred ccceEEEeCCCCHHHHHHHHHHHhhccC-----CchHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999999999999987521 1122334579999999998874
No 34
>KOG0651|consensus
Probab=99.90 E-value=7.8e-24 Score=149.65 Aligned_cols=130 Identities=49% Similarity=0.907 Sum_probs=121.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceE
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRK 81 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~ 81 (131)
|..|+.+.|||||+||+|++...+.+..........+++.+++++|++...-++|-+|.|||+|+.+|++++||||.|+.
T Consensus 218 f~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk 297 (388)
T KOG0651|consen 218 FRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRK 297 (388)
T ss_pred HHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccce
Confidence 78999999999999999999998876667777788899999999999998889999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+.+|.|+...|..+++.+-+......+++..++.+.++||.++|+...|+
T Consensus 298 ~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~t 347 (388)
T KOG0651|consen 298 VEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCT 347 (388)
T ss_pred eccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcc
Confidence 99999999999999998888777778899999999999999999988774
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=1.8e-22 Score=146.59 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=91.5
Q ss_pred CHHHHHhc-----CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCC------------CCCCCeEEEeeCC
Q psy522 1 LFRVAEEH-----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF------------DSRGDVKVIMATN 63 (131)
Q Consensus 1 vF~~A~~~-----~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~v~vi~ttn 63 (131)
+|+.|++. +||||||||+|++++.+++.+ .......+..++++.+|++ ...++|+||+|||
T Consensus 199 ~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTN 276 (413)
T PLN00020 199 RYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGN 276 (413)
T ss_pred HHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCC
Confidence 47888764 699999999999999885322 2211223336888888763 2346799999999
Q ss_pred CCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCC
Q psy522 64 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120 (131)
Q Consensus 64 ~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 120 (131)
+|+.||++++||||||+.+ ..|+.++|.+|++.+++..++. ..++..++..+.|
T Consensus 277 rpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 277 DFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred CcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 9999999999999999865 6899999999999999987765 4688888888877
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=4.2e-22 Score=157.69 Aligned_cols=128 Identities=47% Similarity=0.767 Sum_probs=113.1
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|..+.|+||||||+|.++.++....... ...+...++..++++...++++||++||.++.+|++++++|||+.
T Consensus 263 lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~---~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~ 339 (733)
T TIGR01243 263 IFKEAEENAPSIIFIDEIDAIAPKREEVTGEV---EKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDR 339 (733)
T ss_pred HHHHHHhcCCcEEEeehhhhhcccccCCcchH---HHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccE
Confidence 48889999999999999999998874433322 235677888888988777899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+.++.|+.++|.+||+.+.+......+.++..+++.|.||+++||..+|+
T Consensus 340 ~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 340 EIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999888877889999999999999999998863
No 37
>KOG0741|consensus
Probab=99.86 E-value=7.2e-23 Score=153.13 Aligned_cols=121 Identities=36% Similarity=0.615 Sum_probs=105.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
=.||++||+|+++..|++..+... .-..+++++|..||++..-++++|||-||+.+.||+|++|||||+.++++.+||+
T Consensus 325 LHIIIFDEiDAICKqRGS~~g~TG-VhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE 403 (744)
T KOG0741|consen 325 LHIIIFDEIDAICKQRGSMAGSTG-VHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDE 403 (744)
T ss_pred ceEEEehhhHHHHHhcCCCCCCCC-ccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCc
Confidence 468999999999999876443222 1236899999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC----CCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 90 KTKRRIFNIHTSRM----TLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 90 ~~R~~il~~~l~~~----~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+.|.+|++.+.+++ .+..++|+.++|..|..|||++|+.+++
T Consensus 404 ~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 404 KGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred cCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 99999999887654 3457899999999999999999999873
No 38
>KOG0735|consensus
Probab=99.71 E-value=4e-17 Score=125.89 Aligned_cols=129 Identities=21% Similarity=0.341 Sum_probs=101.5
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-C-CCCCCeEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-F-DSRGDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
+|..|-+++||||++|++|.++...++.++ +.......+..+++++-. + ..+..+.||||.+..+.+++-+.+|++|
T Consensus 486 vfse~~~~~PSiIvLDdld~l~~~s~~e~~-q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~F 564 (952)
T KOG0735|consen 486 VFSEALWYAPSIIVLDDLDCLASASSNENG-QDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLF 564 (952)
T ss_pred HHHHHHhhCCcEEEEcchhhhhccCcccCC-cchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccce
Confidence 588999999999999999999984433333 333344455555543332 2 2234589999999999999999999999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
+.++.+++|+..+|.+|+++.+++.... ...|+..++..|+||.+.|++.++
T Consensus 565 q~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 565 QIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred EEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 9999999999999999999999876533 334566699999999999999876
No 39
>KOG0742|consensus
Probab=99.70 E-value=9.9e-17 Score=117.76 Aligned_cols=124 Identities=29% Similarity=0.444 Sum_probs=98.5
Q ss_pred CHHHHHhcCCeE-EEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSI-VFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~i-i~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|++|+.....+ |||||+|+++.+|.+ ...+......++.+|-... ..+.+++++.+||.|..+|.++.. |||
T Consensus 434 lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Rid 507 (630)
T KOG0742|consen 434 LFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RID 507 (630)
T ss_pred HHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhh
Confidence 699998877654 788999999988843 3444455677777774443 234579999999999999999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC---------------------------CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLA---------------------------EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~---------------------------~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
..|+||+|..++|..++..|+..+-.. .+..+++.|..|+||||++|.+|+
T Consensus 508 e~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLv 585 (630)
T KOG0742|consen 508 EVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLV 585 (630)
T ss_pred heeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHH
Confidence 999999999999999999987543211 011278899999999999999986
No 40
>KOG0736|consensus
Probab=99.69 E-value=2.1e-16 Score=122.70 Aligned_cols=125 Identities=25% Similarity=0.377 Sum_probs=106.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|.+|+.++|+|||+-++|.+..++.+ +...+..+.+...+..-+.....++++||+||++.+.+++.+++ .|-+
T Consensus 482 ~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ 556 (953)
T KOG0736|consen 482 IFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLH 556 (953)
T ss_pred HHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhh
Confidence 489999999999999999999855522 34445556666666522233356789999999999999999999 8888
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.|.++.|++++|.+|+++|+.+..+..++.+..++.+|.||+.+|+++++
T Consensus 557 ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~ 606 (953)
T KOG0736|consen 557 EIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALV 606 (953)
T ss_pred hccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
No 41
>KOG0743|consensus
Probab=99.64 E-value=1.6e-15 Score=112.18 Aligned_cols=120 Identities=26% Similarity=0.304 Sum_probs=90.9
Q ss_pred cCCeEEEecccccccCcCCCCCCC--c-h-hHHHHHHHHHHHHhcCCCCCC--CeEEEeeCCCCCcccccccCCCccceE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSG--G-E-REIQRTMLELLNQLDGFDSRG--DVKVIMATNRIETLDPALIRPGRIDRK 81 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~--~-~-~~~~~~~~~~l~~~~~~~~~~--~v~vi~ttn~~~~id~~l~~~grf~~~ 81 (131)
...|||+|++||+-+.-+...... . + ....-+++.+|+.+||+.+.- -.|+|+|||+++.+|||++||||.|.+
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 446999999999987544322211 1 1 122357788999999997774 699999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCC--CCHHHHHHh
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD--LSGADIKAI 129 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g--~s~~di~~l 129 (131)
|+++..+.++-+.++..|+.... +-.-+.++...-+| .||||+...
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999997643 12234445444444 699998753
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=3.3e-14 Score=90.21 Aligned_cols=82 Identities=44% Similarity=0.676 Sum_probs=66.3
Q ss_pred CHHHHHhcC-CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC-CCeEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHA-PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~-p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
+|..|+... |+||+|||+|.++.+. +..........+..++..++..... +++++|+|||.++.+++.++| +||
T Consensus 49 ~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf 124 (132)
T PF00004_consen 49 FFKKAKKSAKPCVLFIDEIDKLFPKS---QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRF 124 (132)
T ss_dssp HHHHHHHTSTSEEEEEETGGGTSHHC---STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTS
T ss_pred ccccccccccceeeeeccchhccccc---ccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCC
Confidence 377888887 9999999999999877 2223333456777888888887666 579999999999999999998 899
Q ss_pred ceEEEeCC
Q psy522 79 DRKIEFPL 86 (131)
Q Consensus 79 ~~~i~~~~ 86 (131)
+..++++.
T Consensus 125 ~~~i~~~~ 132 (132)
T PF00004_consen 125 DRRIEFPL 132 (132)
T ss_dssp EEEEEE-S
T ss_pred cEEEEcCC
Confidence 99999874
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.5e-13 Score=100.68 Aligned_cols=126 Identities=45% Similarity=0.599 Sum_probs=110.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+..+|+++++|++|.+.+.+.. ........+..+++..++++.... +++++.||.+..+++++++||||+.
T Consensus 68 ~~~~a~~~~~~ii~~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~ 143 (494)
T COG0464 68 LFEEAEKLAPSIIFIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDR 143 (494)
T ss_pred HHHHHHHhCCCeEeechhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccce
Confidence 478999999999999999999998865 222234467788888888887445 9999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.+.+..|+...|.+++....+......+.++..++..+.||+++|+..+|
T Consensus 144 ~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 144 EIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred eeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 99999999999999999998888777788999999999999999999887
No 44
>KOG0744|consensus
Probab=99.20 E-value=1.6e-11 Score=88.17 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=91.2
Q ss_pred EEEecccccccCcCCCCC-CCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 12 IVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 12 ii~iDe~d~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
.++|||+|++...|.+.. ........++++.+|+++|.++..++|++++|+|..++||.|+.. |-|-..++++|+.+
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAE 330 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHH
Confidence 478899999998885443 333456678999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhcCC---CC------C---------CcccHHHHHHH-cCCCCHHHHHHh
Q psy522 91 TKRRIFNIHTSRM---TL------A---------EDVNLQELIMA-KDDLSGADIKAI 129 (131)
Q Consensus 91 ~R~~il~~~l~~~---~~------~---------~~~~~~~la~~-t~g~s~~di~~l 129 (131)
.|.+|++.++... ++ + .+...+.++.. +.|+||+-|.+|
T Consensus 331 ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkL 388 (423)
T KOG0744|consen 331 AIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKL 388 (423)
T ss_pred HHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhh
Confidence 9999998875321 00 0 11123334443 589999888765
No 45
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.04 E-value=5.4e-10 Score=89.15 Aligned_cols=90 Identities=31% Similarity=0.415 Sum_probs=67.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRPG 76 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~g 76 (131)
|..+++..|+||||||+|.++..+...+ .......++..++ ..+.+.+||+|+.++ ..|+++.|
T Consensus 271 ~~~l~~~~~~ILfIDEIh~L~g~g~~~~--g~~d~~nlLkp~L-------~~g~i~vIgATt~~E~~~~~~~D~AL~r-- 339 (758)
T PRK11034 271 LKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLL-------SSGKIRVIGSTTYQEFSNIFEKDRALAR-- 339 (758)
T ss_pred HHHHHhcCCCEEEeccHHHHhccCCCCC--cHHHHHHHHHHHH-------hCCCeEEEecCChHHHHHHhhccHHHHh--
Confidence 5567778899999999999987763222 1222223333333 457899999999765 57999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcCC
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
||+ .|.++.|+.+++..|++.+...+
T Consensus 340 RFq-~I~v~ePs~~~~~~IL~~~~~~y 365 (758)
T PRK11034 340 RFQ-KIDITEPSIEETVQIINGLKPKY 365 (758)
T ss_pred hCc-EEEeCCCCHHHHHHHHHHHHHHh
Confidence 996 79999999999999999875544
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.01 E-value=1.6e-09 Score=86.62 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=76.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC-----CcccccccCC
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI-----ETLDPALIRP 75 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~-----~~id~~l~~~ 75 (131)
+|+.|+++.|+||||||+|.++......++.. .....+... + ..+.+.+||+|+.. ...|+++.|
T Consensus 266 i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~--~~~~~L~~~---l----~~g~i~~IgaTt~~e~~~~~~~d~al~r- 335 (731)
T TIGR02639 266 VVSEIEKEPNAILFIDEIHTIVGAGATSGGSM--DASNLLKPA---L----SSGKLRCIGSTTYEEYKNHFEKDRALSR- 335 (731)
T ss_pred HHHHHhccCCeEEEEecHHHHhccCCCCCccH--HHHHHHHHH---H----hCCCeEEEEecCHHHHHHHhhhhHHHHH-
Confidence 46777788899999999999987653222211 122222222 2 35679999999963 357999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCC----CCC-CcccHHHHHHHcCCCCH
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLA-EDVNLQELIMAKDDLSG 123 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t~g~s~ 123 (131)
||. .|.++.|+.+++.+|++.+...+ .+. .+..+..++..+.+|-+
T Consensus 336 -Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 336 -RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred -hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 997 79999999999999999765432 221 33346666666666543
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=98.95 E-value=9.3e-09 Score=73.91 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=63.8
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC--C---cccccccCCCccceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI--E---TLDPALIRPGRIDRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~--~---~id~~l~~~grf~~~i 82 (131)
..+.||||||+|.+...++. ... .......++..|+. ..+.++||++++.. + .++|++++ ||+..|
T Consensus 121 a~ggVLfIDE~~~l~~~~~~--~~~---~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i 191 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNE--RDY---GSEAIEILLQVMEN--QRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHV 191 (287)
T ss_pred ccCCEEEEEccchhccCCCc--cch---HHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceE
Confidence 45689999999998754311 111 23455666666664 23567777777532 1 23689999 999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCC
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTL 105 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~ 105 (131)
+|++++.+++.+|++.++.....
T Consensus 192 ~F~~~t~~el~~I~~~~l~~~~~ 214 (287)
T CHL00181 192 DFPDYTPEELLQIAKIMLEEQQY 214 (287)
T ss_pred EcCCcCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999976543
No 48
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.93 E-value=6e-09 Score=83.78 Aligned_cols=88 Identities=26% Similarity=0.395 Sum_probs=60.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH------hcCC----CCCCCeEEEeeCCCCCccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ------LDGF----DSRGDVKVIMATNRIETLDPA 71 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~----~~~~~v~vi~ttn~~~~id~~ 71 (131)
|..|..+.| ||+|||+|.+.+... ++ . ...+.+++.. .+.+ ...+++++|+|||.++.+|++
T Consensus 408 l~~~~~~~~-villDEidk~~~~~~--~~-~----~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~ 479 (775)
T TIGR00763 408 LKKAKTKNP-LFLLDEIDKIGSSFR--GD-P----ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRP 479 (775)
T ss_pred HHHhCcCCC-EEEEechhhcCCccC--CC-H----HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHH
Confidence 345555565 889999999985431 11 1 1122222211 1111 112578999999999999999
Q ss_pred ccCCCccceEEEeCCCCHHHHHHHHHHHh
Q psy522 72 LIRPGRIDRKIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 72 l~~~grf~~~i~~~~P~~~~R~~il~~~l 100 (131)
+++ ||+ .|.++.|+.+++.+|++.++
T Consensus 480 L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 480 LLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 999 996 78999999999999998876
No 49
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.81 E-value=1.6e-08 Score=81.86 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=75.3
Q ss_pred HHHHHh-cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCC
Q psy522 2 FRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRP 75 (131)
Q Consensus 2 F~~A~~-~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~ 75 (131)
|+.++. ..++||||||++.+...++..+. . ....++... ...+.+.+||||+..+ .+|+++.|
T Consensus 272 i~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~--d~~n~Lkp~-------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r- 340 (852)
T TIGR03345 272 IDEVKASPQPIILFIDEAHTLIGAGGQAGQ-G--DAANLLKPA-------LARGELRTIAATTWAEYKKYFEKDPALTR- 340 (852)
T ss_pred HHHHHhcCCCeEEEEeChHHhccCCCcccc-c--cHHHHhhHH-------hhCCCeEEEEecCHHHHhhhhhccHHHHH-
Confidence 555654 46899999999999877632211 1 111222222 2457899999998643 48999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCCC----CC-CcccHHHHHHHcCCCCH
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSRMT----LA-EDVNLQELIMAKDDLSG 123 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~~~----~~-~~~~~~~la~~t~g~s~ 123 (131)
||. .|.++.|+.+++..|++.+...+. +. .+..+..++..+.+|-+
T Consensus 341 -Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 341 -RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred -hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 995 899999999999999876654332 22 34457777888877754
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.79 E-value=5.3e-08 Score=69.92 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=64.3
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC--CCc---ccccccCCCccceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR--IET---LDPALIRPGRIDRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~--~~~---id~~l~~~grf~~~i 82 (131)
..+++|||||++.+...+. .... .......++..|+. ...++++|++++. ++. ++|++.+ ||...|
T Consensus 120 a~~gvL~iDEi~~L~~~~~--~~~~---~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i 190 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDN--ERDY---GQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHV 190 (284)
T ss_pred ccCcEEEEechhhhccCCC--ccch---HHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEE
Confidence 3468999999999865431 1111 22455566666764 3356777777663 233 3799999 999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCC
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTL 105 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~ 105 (131)
+||+++.+++.+|++++++....
T Consensus 191 ~fp~l~~edl~~I~~~~l~~~~~ 213 (284)
T TIGR02880 191 DFPDYSEAELLVIAGLMLKEQQY 213 (284)
T ss_pred EeCCcCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987543
No 51
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.74 E-value=8.8e-08 Score=67.92 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=62.3
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC-----CcccccccCCCccceEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI-----ETLDPALIRPGRIDRKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~-----~~id~~l~~~grf~~~i~ 83 (131)
.++||||||+|.+.... ........+..++..++.. .+.+++|+++... ..++|++++ ||+..++
T Consensus 105 ~~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~ 174 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISID 174 (261)
T ss_pred cCCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEE
Confidence 46899999999986321 1111234566777777653 3455565554322 236889999 9999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA 106 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~ 106 (131)
++.++.+++.+|++.++......
T Consensus 175 f~~~~~~el~~Il~~~~~~~~~~ 197 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVKEREYK 197 (261)
T ss_pred ECCCCHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999865543
No 52
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.68 E-value=6.2e-08 Score=78.67 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=72.8
Q ss_pred HHHH-HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCC
Q psy522 2 FRVA-EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRP 75 (131)
Q Consensus 2 F~~A-~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~ 75 (131)
|+.+ +...|+||||||++.+.++++..+. .. ...++. ..-..+.+.+||+|+..+ .+|+++.|
T Consensus 263 ~~~~~~~~~~~ILfIDEih~l~~~~~~~~~-~d--~~~~lk-------p~l~~g~l~~IgaTt~~e~r~~~~~d~al~r- 331 (857)
T PRK10865 263 LNDLAKQEGNVILFIDELHTMVGAGKADGA-MD--AGNMLK-------PALARGELHCVGATTLDEYRQYIEKDAALER- 331 (857)
T ss_pred HHHHHHcCCCeEEEEecHHHhccCCCCccc-hh--HHHHhc-------chhhcCCCeEEEcCCCHHHHHHhhhcHHHHh-
Confidence 4443 3457899999999999876632221 11 122222 222457899999999876 48999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCCCCC-----CcccHHHHHHHcCCCC
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----EDVNLQELIMAKDDLS 122 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s 122 (131)
||+ .|.++.|+.+++..|++.+...+... .+..+...+..+.+|-
T Consensus 332 -Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 332 -RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred -hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 997 68999999999999999876544322 2233444555555554
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.68 E-value=1.3e-07 Score=68.25 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=55.7
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCC
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 122 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s 122 (131)
+++.+|++|+.+..+++++++ ||...+.+++|+.++..++++......... ++..+..++..+.|+.
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 458899999999999999999 999899999999999999999887755444 2334777888888864
No 54
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.66 E-value=8.1e-08 Score=78.03 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=73.6
Q ss_pred HHHHHh-cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCC
Q psy522 2 FRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRP 75 (131)
Q Consensus 2 F~~A~~-~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~ 75 (131)
|..+.. ..|+||||||++.+++..+..+. .....+ +......+.+.+||+|+..+ ..|+++.|
T Consensus 258 l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~-------Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~r- 326 (852)
T TIGR03346 258 LNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNM-------LKPALARGELHCIGATTLDEYRKYIEKDAALER- 326 (852)
T ss_pred HHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHH-------hchhhhcCceEEEEeCcHHHHHHHhhcCHHHHh-
Confidence 445544 36899999999999875432211 111112 12223457899999999764 47999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCCCCC-----CcccHHHHHHHcCCCCH
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----EDVNLQELIMAKDDLSG 123 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s~ 123 (131)
||. .|.++.|+.+++..|++.+...+... .+..+..++..+.+|-+
T Consensus 327 -Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 327 -RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred -cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 996 68999999999999999876554332 23346666666766643
No 55
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.65 E-value=1.4e-07 Score=68.97 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=56.3
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCC
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 122 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s 122 (131)
+++.+|++|+.+..+++.+++ ||+..+.+++|+.+++.++++......+.. ++.-+..++..+.|..
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence 457899999999999999999 999999999999999999999887766554 2334778898888864
No 56
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.60 E-value=1.9e-07 Score=70.09 Aligned_cols=106 Identities=17% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCccc--eEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRID--RKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf~--~~i~ 83 (131)
.+.+|+|||+|.+..++ . ....++..++.....+..++|+++..|..+ ++.+++ ||. ..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~------~------~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~ 264 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKE------R------TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVD 264 (405)
T ss_pred hCCEEEEehhhhhcCCH------H------HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEE
Confidence 36799999999986443 1 111233333332234455677666667664 578888 986 5799
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
+++|+.++|..|++..+...+.. ++..+..+|+...| +.++|+.+
T Consensus 265 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~ 310 (405)
T TIGR00362 265 IEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGA 310 (405)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Confidence 99999999999999998766554 33346667776654 45555543
No 57
>PRK06893 DNA replication initiation factor; Validated
Probab=98.53 E-value=1.9e-07 Score=65.10 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=63.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCC-eEEEeeCCCCCccc---ccccCCCccceEEEe
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVIMATNRIETLD---PALIRPGRIDRKIEF 84 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-v~vi~ttn~~~~id---~~l~~~grf~~~i~~ 84 (131)
+..+|+|||++.+..+. .. ... +++.++.....++ +++++++..|..++ +.+.+..+++..+.+
T Consensus 91 ~~dlLilDDi~~~~~~~------~~---~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l 158 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNE------EW---ELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL 158 (229)
T ss_pred cCCEEEEeChhhhcCCh------HH---HHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC
Confidence 46799999999986433 11 112 3333333333343 45666666788776 789984445688999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++|+.++|.++++......++. ++.-+..++.+..|
T Consensus 159 ~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 159 NDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 9999999999999887654443 22224455555443
No 58
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.53 E-value=3.6e-07 Score=74.07 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=76.0
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCC
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRP 75 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~ 75 (131)
+|+.++...|+||||||++.++...+..+. . .....+...+ ..+.+.+||+|+..+ ..|+++.+
T Consensus 263 i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~--~~a~lLkp~l-------~rg~l~~IgaTt~~ey~~~ie~D~aL~r- 331 (821)
T CHL00095 263 IFDEIQENNNIILVIDEVHTLIGAGAAEGA-I--DAANILKPAL-------ARGELQCIGATTLDEYRKHIEKDPALER- 331 (821)
T ss_pred HHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c--cHHHHhHHHH-------hCCCcEEEEeCCHHHHHHHHhcCHHHHh-
Confidence 467778888999999999999977643222 1 1222333222 356789999999754 47899999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhc----CCCCC-CcccHHHHHHHcCCCCH
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTS----RMTLA-EDVNLQELIMAKDDLSG 123 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~----~~~~~-~~~~~~~la~~t~g~s~ 123 (131)
||. .|.++.|+.++...|++.... ..+.. ++..+..++..+.||.+
T Consensus 332 -Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 332 -RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred -cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 996 589999999999999976532 22222 33346677777777765
No 59
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.52 E-value=3.8e-07 Score=69.38 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=68.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc---ccccccCCCccc--eEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---LDPALIRPGRID--RKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~---id~~l~~~grf~--~~i~ 83 (131)
.+.+|+|||++.+..++. ....++..++.....++.++|+++..|.. +++.+++ ||. ..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~------------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~ 276 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKER------------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVD 276 (450)
T ss_pred cCCEEEEehhhhhcCCHH------------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEE
Confidence 578999999999854430 11223333333333445567777667666 6788999 995 5899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHH
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~ 127 (131)
+++|+.++|.+|++..+...+.. ++.-+..+|....| +.++|+
T Consensus 277 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~ 320 (450)
T PRK00149 277 IEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELE 320 (450)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHH
Confidence 99999999999999998765443 23336666666554 344443
No 60
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.45 E-value=8.7e-07 Score=67.28 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=67.8
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCcc--ceEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRI--DRKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf--~~~i~ 83 (131)
+|.+|+|||++.+..+.. ....++..++.+...++.+++++.+.|..+ .+.+++ || +..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~------------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~ 259 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTG------------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAK 259 (440)
T ss_pred cCCEEEEechhhhcCcHH------------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEe
Confidence 688999999998865420 111222233333334456677666777764 567888 87 46788
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHH
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKA 128 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~ 128 (131)
+++|+.+.|.+|++..+...+.. ++.-+..++....| +.++|+.
T Consensus 260 i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g 304 (440)
T PRK14088 260 LEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRG 304 (440)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHH
Confidence 99999999999999998754443 22336667776554 3444443
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=9.3e-07 Score=61.78 Aligned_cols=99 Identities=18% Similarity=0.340 Sum_probs=62.4
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCcc--ceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRI--DRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf--~~~i 82 (131)
.+..+|+|||+|.+..+. .. ...+..+++.. ...+.-+++.+...|..+ ++.+++ || ...+
T Consensus 92 ~~~dlLiIDDi~~l~~~~------~~---~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~ 157 (233)
T PRK08727 92 EGRSLVALDGLESIAGQR------ED---EVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRI 157 (233)
T ss_pred hcCCEEEEeCcccccCCh------HH---HHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceE
Confidence 345799999999886543 11 11222333333 223333444444467766 689999 97 5678
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
.+++|+.++|.++++......++. ++..+..++..+.|
T Consensus 158 ~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 158 GLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 999999999999999866543443 22335667776554
No 62
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.36 E-value=2.4e-06 Score=66.90 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=66.9
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC---cccccccCCCcc--ceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE---TLDPALIRPGRI--DRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~---~id~~l~~~grf--~~~i 82 (131)
..+.+|+|||++.+..+. . ....+++.++.+...++-+||.+...|. .+++.|++ || ...+
T Consensus 376 ~~~DLLlIDDIq~l~gke------~------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv 441 (617)
T PRK14086 376 REMDILLVDDIQFLEDKE------S------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLIT 441 (617)
T ss_pred hcCCEEEEehhccccCCH------H------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceE
Confidence 457899999999986543 1 1122333333333444445554444454 46789999 88 6677
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHH
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKA 128 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~ 128 (131)
.+..|+.+.|.+||+.......+. ++.-+..|+.+..+ +.++|+.
T Consensus 442 ~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~Leg 487 (617)
T PRK14086 442 DVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEG 487 (617)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHH
Confidence 999999999999999998876655 22235556665443 3444443
No 63
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.35 E-value=4.7e-06 Score=64.74 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=52.1
Q ss_pred eEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 56 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 56 v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.++.+||+.|+.+++++++ |+. .+.+++++.++..+++++.++..+.. ++..+..++..+. +++++..++
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll 305 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIV 305 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHH
Confidence 5566777889999999999 985 78899999999999999998876654 2223454555443 567776654
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.34 E-value=1.5e-06 Score=60.23 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=66.4
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCccc--eEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRID--RKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf~--~~i 82 (131)
....+|+||+++.+..+. .+...++..++.+...++.+++++...|..+ ++.+++ ||. ..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~------------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~ 161 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQ------------RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVV 161 (219)
T ss_dssp CTSSEEEEETGGGGTTHH------------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEE
T ss_pred hcCCEEEEecchhhcCch------------HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchh
Confidence 345799999999986432 1223333444443455667777776777765 678888 874 589
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHHcCCCCHHHHHHhh
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTLAEDVN-LQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~di~~l~ 130 (131)
.+.+|+.+.|.++++......+..-+.+ +.-++....+ +.++|+.++
T Consensus 162 ~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l 209 (219)
T PF00308_consen 162 ELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGAL 209 (219)
T ss_dssp EE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHH
Confidence 9999999999999999988776663333 4556665443 667766553
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=5.9e-06 Score=61.31 Aligned_cols=97 Identities=16% Similarity=0.289 Sum_probs=69.1
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..|++|||+|.+-. ...+.++..++. ..+.+.+|.+|+.++.+.+.+++ |+ ..+.+++|+.
T Consensus 120 ~kviIIDEa~~l~~--------------~a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~ 180 (363)
T PRK14961 120 FKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISE 180 (363)
T ss_pred ceEEEEEChhhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCH
Confidence 35999999998731 233445655654 23466777778888999999998 88 5799999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHH
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADI 126 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di 126 (131)
++..++++..++..+.. ++..+..++..+.| +++++
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~a 217 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDA 217 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 99999999887765543 33346667777766 44443
No 66
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.24 E-value=4.6e-06 Score=57.55 Aligned_cols=106 Identities=18% Similarity=0.278 Sum_probs=64.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc---ccccCCCcc--ceEEEe
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD---PALIRPGRI--DRKIEF 84 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id---~~l~~~grf--~~~i~~ 84 (131)
+.+|+|||+|.+.... . ....+..++..+. ..+..++++++..+..++ +.+.+ || ...+.+
T Consensus 91 ~~lLvIDdi~~l~~~~------~---~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l 156 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP------E---WQEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL 156 (226)
T ss_pred CCEEEEeChhhhcCCh------H---HHHHHHHHHHHHH---HcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence 4689999999874321 0 0123333433332 223345555444554443 67777 76 478999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
++|+.+++..+++.+....+.. .+.-+..++.. -+-+++++..++
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l 202 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALL 202 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHH
Confidence 9999999999999887655443 22235666664 444566666553
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=2.6e-06 Score=59.62 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=59.7
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCC-eEEEeeCCCCCc---ccccccCCCccc--eEEEe
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVIMATNRIET---LDPALIRPGRID--RKIEF 84 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-v~vi~ttn~~~~---id~~l~~~grf~--~~i~~ 84 (131)
.+|+|||++.+..+. ..+ ..+-.+++. ....++ .+++.+++.|.. +.+.+++ |+. ..+.+
T Consensus 99 dlliiDdi~~~~~~~-----~~~----~~lf~l~n~---~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l 164 (235)
T PRK08084 99 SLVCIDNIECIAGDE-----LWE----MAIFDLYNR---ILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKL 164 (235)
T ss_pred CEEEEeChhhhcCCH-----HHH----HHHHHHHHH---HHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeee
Confidence 589999999875432 111 122222222 223343 455555556666 5799999 985 88999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++|+.++|.++++......++. ++.-+..++.+..|
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~ 201 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR 201 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC
Confidence 9999999999998855544443 22235556666544
No 68
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=4.4e-06 Score=63.68 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=68.2
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCcc--ceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRI--DRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf--~~~i 82 (131)
..+.+|+|||++.+..+. .....+...++.....++.+|+++...|+.+ ++.+++ || +..+
T Consensus 205 ~~~dvLiIDDiq~l~~k~------------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~ 270 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKE------------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSI 270 (450)
T ss_pred ccCCEEEEeccccccCCH------------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCcee
Confidence 456799999999885432 1222233333333344444555555556555 688999 88 5788
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCC--C-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTL--A-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~--~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.+.+|+.++|.+++++.+...+. . ++.-+..++....| +++.+..++
T Consensus 271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL 320 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSV 320 (450)
T ss_pred ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHH
Confidence 89999999999999999876543 1 22235566776665 455555443
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=7.3e-06 Score=62.60 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
...|++|||+|.+-. ...+.+|..++. ....+++|.+|+.++.|++.+++ |+. .+.|..++
T Consensus 121 ~~KV~IIDEah~Ls~--------------~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls 181 (484)
T PRK14956 121 KYKVYIIDEVHMLTD--------------QSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVP 181 (484)
T ss_pred CCEEEEEechhhcCH--------------HHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCC
Confidence 456999999999832 245556666653 33578899999999999999999 984 78899999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCC
Q psy522 89 EKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 121 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 121 (131)
.++-.+.+++.+...+.. .+..+..++..+.|-
T Consensus 182 ~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 182 LSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 988888888888766554 333467777777763
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=1e-05 Score=60.74 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=64.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..|++|||+|.+... ..+.++..++.. .+++++|.+|++++.+.+.+++ |+ ..++|++|+.
T Consensus 118 ~kViiIDead~m~~~--------------aanaLLk~LEep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~ 178 (394)
T PRK07940 118 WRIVVIEDADRLTER--------------AANALLKAVEEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSV 178 (394)
T ss_pred cEEEEEechhhcCHH--------------HHHHHHHHhhcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCH
Confidence 359999999998422 234566666642 3345555555559999999999 98 5899999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHH
Q psy522 90 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADI 126 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di 126 (131)
++..+++... .+.. ......++..+.|..+.-+
T Consensus 179 ~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 179 EAVAEVLVRR---DGVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred HHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 9977777632 2232 2345667888888766544
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=6.6e-06 Score=65.78 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=69.9
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..|++|||+|.|-. ...+.+|+.|+. ..+.+.+|.+||+++.|.+.|++ |+ ..+.|..++.
T Consensus 120 ~KVIIIDEah~LT~--------------~A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~ 180 (830)
T PRK07003 120 FKVYMIDEVHMLTN--------------HAFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPA 180 (830)
T ss_pred ceEEEEeChhhCCH--------------HHHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCH
Confidence 46899999998832 234455555553 23578899999999999999999 99 5899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 121 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 121 (131)
++-.+.++..+...++. .+..+..|+....|-
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 99999999888765544 333466677776663
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=6.3e-06 Score=62.72 Aligned_cols=98 Identities=19% Similarity=0.314 Sum_probs=61.9
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc---ccccccCCCccc--eEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---LDPALIRPGRID--RKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~---id~~l~~~grf~--~~i 82 (131)
..+.+|+|||++.+..+. .... .+..+++.+ ...++.++++++..|.. +++.+++ ||. ..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~-----~~qe----elf~l~N~l---~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~ 266 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKG-----ATQE----EFFHTFNSL---HTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAI 266 (445)
T ss_pred ccCCEEEEcchhhhcCCh-----hhHH----HHHHHHHHH---HHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEE
Confidence 356799999999875432 1111 222222222 22344566666555654 5789999 995 889
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHHcC
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTLAE-DVNLQELIMAKD 119 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~~~-~~~~~~la~~t~ 119 (131)
.+++|+.+.|.+|++......+..- +.-+..++....
T Consensus 267 ~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~ 304 (445)
T PRK12422 267 PLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS 304 (445)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 9999999999999999887665442 222444555443
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.18 E-value=1.1e-05 Score=59.39 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=65.5
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-||+|||+|.+.. ...+.++..++. ..+.+++|.+|++++.+.+.+++ |+. .+.+++|+.+
T Consensus 119 ~vviidea~~l~~--------------~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~ 179 (355)
T TIGR02397 119 KVYIIDEVHMLSK--------------SAFNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLE 179 (355)
T ss_pred eEEEEeChhhcCH--------------HHHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHH
Confidence 5899999988731 234456666654 23467777888889999999999 884 7899999999
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+...+++..++..+.. ++..+..+++.+.|
T Consensus 180 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 180 DIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999988766543 22335556666554
No 74
>PRK05642 DNA replication initiation factor; Validated
Probab=98.17 E-value=1.1e-05 Score=56.46 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=61.5
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCcc--ceEEEeC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRI--DRKIEFP 85 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf--~~~i~~~ 85 (131)
.+|+|||++.+..+. . ....+++.++.....++.++++++..|..+ .+.+++ || ...+.+.
T Consensus 99 d~LiiDDi~~~~~~~------~------~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~ 164 (234)
T PRK05642 99 ELVCLDDLDVIAGKA------D------WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMR 164 (234)
T ss_pred CEEEEechhhhcCCh------H------HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecC
Confidence 578999999875443 1 112233444444455677888887766554 588999 98 4677889
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 86 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 86 ~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+|+.++|.++++......++. ++.-+..+++...|
T Consensus 165 ~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 165 GLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 999999999999555443333 22224445555443
No 75
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.17 E-value=2.6e-05 Score=57.60 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=57.0
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-CCCCCCeEEEeeCCCCC---cccccccCCCccc-eEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDSRGDVKVIMATNRIE---TLDPALIRPGRID-RKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~v~vi~ttn~~~---~id~~l~~~grf~-~~i 82 (131)
..|.||+|||+|.+.... . ..+..++...+. -....++.+|+++|.++ .+++.+.+ ||. ..+
T Consensus 128 ~~~~vlvIDE~d~L~~~~-------~----~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i 194 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGDD-------D----DLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEI 194 (365)
T ss_pred CCeEEEEECchhhhccCC-------c----HHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCccee
Confidence 457899999999997221 1 123333322111 11235788999999875 57888887 775 679
Q ss_pred EeCCCCHHHHHHHHHHHhc
Q psy522 83 EFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~ 101 (131)
.+++++.++..+|++..+.
T Consensus 195 ~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 195 IFPPYDAEELRDILENRAE 213 (365)
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=1.7e-05 Score=60.75 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=66.1
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..||+|||+|.+.. .....++..++. ..+.+++|++|+.+..+++++++ |+. .+.+.+|+.
T Consensus 118 ~kVvIIDE~h~Lt~--------------~a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~ 178 (472)
T PRK14962 118 YKVYIIDEVHMLTK--------------EAFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISD 178 (472)
T ss_pred eEEEEEEChHHhHH--------------HHHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccH
Confidence 46999999998832 234455666654 23467777777788899999999 884 899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++...+++..+...+.. .+..+..++..+.|
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 99999999887654433 22335666665544
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=2.1e-05 Score=60.76 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=70.9
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+.. ...+.++..++. ..+.+++|++|+.++.+++.+++ |+ ..+.+..++.
T Consensus 129 ~KVvIIDEa~~Ls~--------------~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~ 189 (507)
T PRK06645 129 HKIFIIDEVHMLSK--------------GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSF 189 (507)
T ss_pred cEEEEEEChhhcCH--------------HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCH
Confidence 45899999988731 234455666653 34567888888888999999999 88 4789999999
Q ss_pred HHHHHHHHHHhcCCCCCCc-ccHHHHHHHcCCCCHHHHH
Q psy522 90 KTKRRIFNIHTSRMTLAED-VNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~di~ 127 (131)
++...+++..++..+..-+ ..+..++..+.| +.+++.
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al 227 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAV 227 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 9999999999886665422 336667777666 444443
No 78
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.10 E-value=1.2e-05 Score=65.30 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=57.5
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC---CCcccccccCCCccce-EEEe
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR---IETLDPALIRPGRIDR-KIEF 84 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~---~~~id~~l~~~grf~~-~i~~ 84 (131)
...||+|||+|.|..+. + .++-.++.... ....+++|||.+|. ++.+++.+++ ||.. .+.|
T Consensus 869 ~v~IIILDEID~L~kK~-------Q----DVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF 933 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKT-------Q----KVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVF 933 (1164)
T ss_pred cceEEEeehHhhhCccH-------H----HHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccC
Confidence 35799999999997532 1 23333333222 23457999999985 6677888888 7653 4888
Q ss_pred CCCCHHHHHHHHHHHhcCC
Q psy522 85 PLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~ 103 (131)
++++.++..+|++.-+...
T Consensus 934 ~PYTaEQL~dILk~RAe~A 952 (1164)
T PTZ00112 934 SPYKGDEIEKIIKERLENC 952 (1164)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999987753
No 79
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.09 E-value=1.3e-05 Score=64.78 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=55.6
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH------hcCC----CCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ------LDGF----DSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~----~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
.||+|||+|.+..... ++ ....+.+++.. .|.+ ..-+++++|+|+|+. .|++++++ ||+
T Consensus 418 ~villDEidk~~~~~~--g~-----~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~- 486 (784)
T PRK10787 418 PLFLLDEIDKMSSDMR--GD-----PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME- 486 (784)
T ss_pred CEEEEEChhhcccccC--CC-----HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-
Confidence 3899999999865431 11 11233333321 0111 112679999999987 59999999 996
Q ss_pred EEEeCCCCHHHHHHHHHHHhc
Q psy522 81 KIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~ 101 (131)
.|.+..++.++..+|.+.++.
T Consensus 487 ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 487 VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eeecCCCCHHHHHHHHHHhhh
Confidence 789999999999999998874
No 80
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=2.7e-05 Score=60.92 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=69.2
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+.. ...+.++..++. ..+.+++|.+|+.++.+++.+++ |+. .+.|.+|+.
T Consensus 120 ~kViIIDE~~~Lt~--------------~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~ 180 (559)
T PRK05563 120 YKVYIIDEVHMLST--------------GAFNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISV 180 (559)
T ss_pred eEEEEEECcccCCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCH
Confidence 45899999998731 234556666664 23467777777889999999999 885 688999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHH
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADI 126 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di 126 (131)
++-...++..++..+.. .+..+..++..+.| +.++.
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~a 217 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDA 217 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 99999999888766554 22346666776665 44443
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=2.9e-05 Score=52.34 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=63.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+-||+|||+|.+-.. ..+.++..++.. .+..++|.+|+.+..+.+++++ |+. .+.+++|+
T Consensus 96 ~~kviiide~~~l~~~--------------~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~-~~~~~~~~ 156 (188)
T TIGR00678 96 GRRVVIIEDAERMNEA--------------AANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ-VLPFPPLS 156 (188)
T ss_pred CeEEEEEechhhhCHH--------------HHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-EeeCCCCC
Confidence 3568999999888421 334566666652 3456677777788999999999 874 89999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHcCC
Q psy522 89 EKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 120 (131)
.++...+++.. +++ +..+..++..+.|
T Consensus 157 ~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 157 EEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred HHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 99988888776 233 2346667776665
No 82
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=1.3e-05 Score=63.24 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=69.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..|++|||+|.+.. ...+.+|+.++. ..+++++|.+|+.++.|.+.+++ |+ ..+.|+.++.
T Consensus 125 ~KViIIDEah~Ls~--------------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~ 185 (700)
T PRK12323 125 FKVYMIDEVHMLTN--------------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPP 185 (700)
T ss_pred ceEEEEEChHhcCH--------------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCCh
Confidence 46999999999832 244566666663 34578899999999999999999 98 5899999999
Q ss_pred HHHHHHHHHHhcCCCCCCc-ccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLAED-VNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~-~~~~~la~~t~g 120 (131)
++-.+.+++.+...++..+ ..+..++..+.|
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G 217 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQAAQG 217 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998888765554422 235556666655
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=2.2e-05 Score=62.07 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=69.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.+|..++. ..+.+.+|.+|+.++.|.+.+++ |+ ..+.|.+++.
T Consensus 120 ~KV~IIDEah~Ls~--------------~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~ 180 (647)
T PRK07994 120 FKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDV 180 (647)
T ss_pred CEEEEEechHhCCH--------------HHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCH
Confidence 45999999998832 245566666663 34567888888899999999999 97 6899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++-...+++.+...++. .+..+..++..+.|
T Consensus 181 ~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 181 EQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999999887655443 22346667776666
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.03 E-value=3.7e-05 Score=55.78 Aligned_cols=73 Identities=19% Similarity=0.401 Sum_probs=53.2
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.+|+|||+|.+..+. ....+..++ +.. .+++.+|.|||.+..+++.+++ ||. .+.++.|+
T Consensus 100 ~~~vliiDe~d~l~~~~----------~~~~L~~~l---e~~--~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~ 161 (316)
T PHA02544 100 GGKVIIIDEFDRLGLAD----------AQRHLRSFM---EAY--SKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPT 161 (316)
T ss_pred CCeEEEEECcccccCHH----------HHHHHHHHH---Hhc--CCCceEEEEcCChhhchHHHHh--hce-EEEeCCCC
Confidence 47899999999872211 123333333 322 2456788899999999999999 995 78999999
Q ss_pred HHHHHHHHHHH
Q psy522 89 EKTKRRIFNIH 99 (131)
Q Consensus 89 ~~~R~~il~~~ 99 (131)
.+++.++++.+
T Consensus 162 ~~~~~~il~~~ 172 (316)
T PHA02544 162 KEEQIEMMKQM 172 (316)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 85
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.99 E-value=2.5e-05 Score=58.31 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=63.2
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC---CcccccccCCCccc-eEEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI---ETLDPALIRPGRID-RKIE 83 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~---~~id~~l~~~grf~-~~i~ 83 (131)
..+.||+|||+|.+.... .. ..+..++..++... ..++.+|+++|.. +.+++.+.+ ||. ..++
T Consensus 137 ~~~~viviDE~d~l~~~~------~~----~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~ 203 (394)
T PRK00411 137 DRVLIVALDDINYLFEKE------GN----DVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIY 203 (394)
T ss_pred CCEEEEEECCHhHhhccC------Cc----hHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceee
Confidence 356899999999997221 01 23444444444332 2367788888765 346777776 664 5789
Q ss_pred eCCCCHHHHHHHHHHHhcCCC---CCCcccHHHHHHHcCC
Q psy522 84 FPLPDEKTKRRIFNIHTSRMT---LAEDVNLQELIMAKDD 120 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~---~~~~~~~~~la~~t~g 120 (131)
+++++.++..++++..+.... .-.+..+..+++.+.+
T Consensus 204 f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 243 (394)
T PRK00411 204 FPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAR 243 (394)
T ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHH
Confidence 999999999999998875321 1122235556666533
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=4.4e-05 Score=62.06 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=65.5
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
..-|+||||+|.|-. ...+.+|+.|+.. .+.+++|++|+.++.|.+.|++ |+ ..+.|..++
T Consensus 120 ~~KV~IIDEad~lt~--------------~a~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~ 180 (824)
T PRK07764 120 RYKIFIIDEAHMVTP--------------QGFNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVP 180 (824)
T ss_pred CceEEEEechhhcCH--------------HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCC
Confidence 345999999999842 2455666666642 3567788888888899999999 87 578999999
Q ss_pred HHHHHHHHHHHhcCCCCCC-cccHHHHHHHcCC
Q psy522 89 EKTKRRIFNIHTSRMTLAE-DVNLQELIMAKDD 120 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~~-~~~~~~la~~t~g 120 (131)
.++-..+++..+...++.- +..+..++..+.|
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9998888888876555432 2223444444444
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=5.7e-05 Score=59.61 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=69.4
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+... ..+.++..++. ..+.+.+|.+|+.++.+.+.+++ |+ ..+.|..++.+
T Consensus 126 KV~IIDEvh~Ls~~--------------a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~e 186 (618)
T PRK14951 126 KVFMIDEVHMLTNT--------------AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPE 186 (618)
T ss_pred eEEEEEChhhCCHH--------------HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHH
Confidence 49999999997422 34456666653 23567778888889999999999 88 68999999999
Q ss_pred HHHHHHHHHhcCCCCCC-cccHHHHHHHcCCCCHHHHH
Q psy522 91 TKRRIFNIHTSRMTLAE-DVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~di~ 127 (131)
+-...++..+...++.- +..+..++..+.| +.+++.
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al 223 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDAL 223 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 99999988877665542 2336667776665 344443
No 88
>PRK04132 replication factor C small subunit; Provisional
Probab=97.97 E-value=4.9e-05 Score=61.77 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=66.7
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+-. ...+.++..|+. ..+.+.+|.+||.++.+.+.+++ |+ ..+.|++|+.+
T Consensus 632 KVvIIDEaD~Lt~--------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~ 692 (846)
T PRK04132 632 KIIFLDEADALTQ--------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDE 692 (846)
T ss_pred EEEEEECcccCCH--------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHH
Confidence 5999999999842 233445555553 23578899999999999999999 98 58999999999
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+-...++..+...++. ++..+..++..+.|
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 8888888877654443 23345566665555
No 89
>PRK04195 replication factor C large subunit; Provisional
Probab=97.96 E-value=7.9e-05 Score=57.33 Aligned_cols=95 Identities=14% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc-cccCCCccceEEEeCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~-~l~~~grf~~~i~~~~P 87 (131)
.+.||+|||+|.+..+. .. .....++..+. ..+..+|.+||.+..++. .+++ |+ ..|.|++|
T Consensus 98 ~~kvIiIDEaD~L~~~~------d~----~~~~aL~~~l~----~~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~ 160 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE------DR----GGARAILELIK----KAKQPIILTANDPYDPSLRELRN--AC-LMIEFKRL 160 (482)
T ss_pred CCeEEEEecCccccccc------ch----hHHHHHHHHHH----cCCCCEEEeccCccccchhhHhc--cc-eEEEecCC
Confidence 57899999999986522 11 12223333333 223346667888888877 5665 54 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 88 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+.++...+++..+...+.. .+..+..++..+.|
T Consensus 161 ~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 161 STRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999988766554 23346667766554
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=4.3e-05 Score=59.15 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=69.1
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+.. ...+.++..++.. .+.+.+|.+|+.++.+++.+++ |+ ..+++.+++.+
T Consensus 121 kV~iIDE~~~ls~--------------~a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~ 181 (509)
T PRK14958 121 KVYLIDEVHMLSG--------------HSFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPL 181 (509)
T ss_pred EEEEEEChHhcCH--------------HHHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHH
Confidence 5999999998842 2345566666642 3467788888889999999999 88 57889999999
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHH
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKA 128 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~ 128 (131)
+-...+++.+...+.. .+..+..++..+.| +.+++..
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~ 219 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALS 219 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHH
Confidence 8888888888766554 22336666666655 4555444
No 91
>PRK09087 hypothetical protein; Validated
Probab=97.92 E-value=2.5e-05 Score=54.40 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=61.5
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCccc--eEEEeC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRID--RKIEFP 85 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf~--~~i~~~ 85 (131)
.+|+|||+|.+.. .+. . +++.++.+...++.++|+++..|..+ .+.+++ ||. ..+.+.
T Consensus 89 ~~l~iDDi~~~~~--------~~~----~---lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGGF--------DET----G---LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCCC--------CHH----H---HHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecC
Confidence 4788999997621 111 1 23333333344566777777655543 578999 884 789999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcC
Q psy522 86 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKD 119 (131)
Q Consensus 86 ~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 119 (131)
+|+.+.|.++++..+...+.. ++.-+..++.+..
T Consensus 152 ~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 999999999999998776554 3333556666655
No 92
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=7.7e-05 Score=59.12 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
+..|++|||+|.+-. ...+.++..++. ..+.+.+|.+|+.+..+++.+++ |+ ..+.|.+++
T Consensus 118 k~KV~IIDEVh~LS~--------------~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs 178 (702)
T PRK14960 118 RFKVYLIDEVHMLST--------------HSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLA 178 (702)
T ss_pred CcEEEEEechHhcCH--------------HHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCC
Confidence 346999999998732 134455656654 23567788888889999999998 88 589999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHH
Q psy522 89 EKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~ 127 (131)
.++-...++..+...+.. .+..+..++..+.| +.+++.
T Consensus 179 ~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdAL 217 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDAL 217 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 999999999888766554 23346667776665 444443
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=6.1e-05 Score=57.95 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=72.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+.. ...+.++..++. ..+.+.+|.+|+.++.+++.+++ |+ ..+.+.+++.
T Consensus 117 ~KVvIIDEah~Ls~--------------~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~ 177 (491)
T PRK14964 117 FKVYIIDEVHMLSN--------------SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPT 177 (491)
T ss_pred ceEEEEeChHhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccH
Confidence 45899999988732 245566777764 33567788888888999999999 88 4799999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHH
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKA 128 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~ 128 (131)
++....++..+...+.. .+..+..+++.+.| +.+++..
T Consensus 178 ~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~als 216 (491)
T PRK14964 178 DKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALF 216 (491)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 99999999888766554 33346667777765 4554433
No 94
>PLN03025 replication factor C subunit; Provisional
Probab=97.89 E-value=5.9e-05 Score=55.04 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=62.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.|++|||+|.+.... ...++..++.+ .+...+|.+||.++.+.+.+++ |+ ..+.+++|+
T Consensus 99 ~~kviiiDE~d~lt~~a--------------q~aL~~~lE~~--~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~ 159 (319)
T PLN03025 99 RHKIVILDEADSMTSGA--------------QQALRRTMEIY--SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLS 159 (319)
T ss_pred CeEEEEEechhhcCHHH--------------HHHHHHHHhcc--cCCceEEEEeCCccccchhHHH--hh-hcccCCCCC
Confidence 35799999999984321 12233333322 2335577788888899999999 87 479999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 89 EKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
.++....++..++..+.. .+..+..++..+.|
T Consensus 160 ~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 160 DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999999887765543 22335555555443
No 95
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.89 E-value=0.00011 Score=56.58 Aligned_cols=104 Identities=19% Similarity=0.324 Sum_probs=73.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
|+|+++.|++.++... ...+.+..+..... ..++.+|+.+.+ ..+|+.+.+ +-..+.+|+|+.
T Consensus 82 ~~~~vl~d~h~~~~~~---------~~~r~l~~l~~~~~---~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLNDI---------SISRKLRNLSRILK---TQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhcch---------HHHHHHHHHHHHHH---hCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCH
Confidence 7899999999998321 13344444444333 345555555543 567777775 335789999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
++..++++.+....+.. .+.+++.++..+.|+|..+++.++
T Consensus 145 ~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~ 186 (489)
T CHL00195 145 SEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVL 186 (489)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999998887654433 445688999999999999998764
No 96
>PRK06620 hypothetical protein; Validated
Probab=97.89 E-value=2.3e-05 Score=54.18 Aligned_cols=90 Identities=18% Similarity=0.312 Sum_probs=59.6
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc--ccccccCCCccc--eEEEeC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET--LDPALIRPGRID--RKIEFP 85 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~--id~~l~~~grf~--~~i~~~ 85 (131)
..+++|||+|.+ . + ..+-.+++.+ ...++.++|+++..|.. + +++++ |+. ..+.++
T Consensus 86 ~d~lliDdi~~~---~-------~----~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~ 145 (214)
T PRK06620 86 YNAFIIEDIENW---Q-------E----PALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLN 145 (214)
T ss_pred CCEEEEeccccc---h-------H----HHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeC
Confidence 368999999943 1 1 1222333333 35567788888876665 5 78999 884 479999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcC
Q psy522 86 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKD 119 (131)
Q Consensus 86 ~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 119 (131)
+|+.+.+.++++......++. ++.-++.++....
T Consensus 146 ~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~ 180 (214)
T PRK06620 146 SPDDELIKILIFKHFSISSVTISRQIIDFLLVNLP 180 (214)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Confidence 999999999999887755443 2223455555544
No 97
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00013 Score=56.72 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=68.4
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+-. ...+.++..+... .+.+.+|.+|+.+..+.+.+++ |+ ..+++.+++.+
T Consensus 119 KVvIIDEad~Lt~--------------~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ 179 (535)
T PRK08451 119 KIFIIDEVHMLTK--------------EAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQN 179 (535)
T ss_pred EEEEEECcccCCH--------------HHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHH
Confidence 4899999988732 2344566666643 3456777777888999999999 86 58999999999
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHH
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~ 127 (131)
+-...+++.+...+.. .+..+..++..+.| +.+++.
T Consensus 180 ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~al 216 (535)
T PRK08451 180 SIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTL 216 (535)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 9888888888765544 22346666666555 444443
No 98
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00013 Score=56.48 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.||+|||+|.+.. ..++.++..++. ..+.+++|.+|+.++.+.+.+.+ |+. .+.|.+|+
T Consensus 116 ~~kVVIIDEad~ls~--------------~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls 176 (504)
T PRK14963 116 GRKVYILDEAHMMSK--------------SAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLT 176 (504)
T ss_pred CCeEEEEECccccCH--------------HHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCC
Confidence 456999999986621 234556666654 23467788888999999999999 875 79999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 89 EKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
.++-...+++.++..+.. .+..+..++..+.|
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999999988766554 22335666666655
No 99
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.84 E-value=7.9e-05 Score=55.96 Aligned_cols=94 Identities=21% Similarity=0.317 Sum_probs=66.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc---ccccCCCcc--ceEEEe
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD---PALIRPGRI--DRKIEF 84 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id---~~l~~~grf--~~~i~~ 84 (131)
=.+++|||++.+..+. ++..++.+.+..+...++-+++.+-..|..++ +.+++ || ...+.+
T Consensus 176 ~dlllIDDiq~l~gk~------------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I 241 (408)
T COG0593 176 LDLLLIDDIQFLAGKE------------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEI 241 (408)
T ss_pred cCeeeechHhHhcCCh------------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEee
Confidence 3589999999997664 22333444444445566677777777888875 88999 97 567888
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHH
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA 117 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~ 117 (131)
.+|+.+.|.+|++......++. ++.-...++.+
T Consensus 242 ~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~ 275 (408)
T COG0593 242 EPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKR 275 (408)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 8999999999999977665555 22224445554
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00019 Score=53.22 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=63.9
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
+.||++||+|.+.. .....++..++. ..+..++|.+|+.+..+.+++.+ |+. .+.+++|+.
T Consensus 109 ~kiviIDE~~~l~~--------------~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~ 169 (367)
T PRK14970 109 YKIYIIDEVHMLSS--------------AAFNAFLKTLEE--PPAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITI 169 (367)
T ss_pred cEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCceEEEEEeCCcccCCHHHHh--cce-eEecCCccH
Confidence 46999999987732 134455555554 23345666677778899999998 774 689999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++...++...+...+.. ++..+..++..+.|
T Consensus 170 ~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 170 KDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 99999998877765543 23345666666544
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.82 E-value=0.00012 Score=50.82 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=60.7
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC-CC--cccccccCCCcc--ceEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR-IE--TLDPALIRPGRI--DRKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~-~~--~id~~l~~~grf--~~~i~ 83 (131)
...+|+|||+|.+-.. . ...+..+++.. ...+..++|.+++. +. .+.+.+.+ || ...+.
T Consensus 90 ~~~~liiDdi~~l~~~-------~----~~~L~~~~~~~---~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~ 153 (227)
T PRK08903 90 EAELYAVDDVERLDDA-------Q----QIALFNLFNRV---RAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYE 153 (227)
T ss_pred cCCEEEEeChhhcCch-------H----HHHHHHHHHHH---HHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEE
Confidence 3578999999986321 1 12233333333 23344334444443 32 24567777 77 47999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
+++|+.+++..+++.+..+.++. ++.-+..++....| +..++..+
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~ 199 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMAL 199 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHH
Confidence 99999999999999887665554 22235556664333 34444443
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00021 Score=52.93 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=63.4
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
..-|++|||+|.+-. ...+.++..++.. ..+.++|..|+.++.+.+.+++ |+ ..+.+++|+
T Consensus 141 ~~rVviIDeAd~l~~--------------~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~ 201 (351)
T PRK09112 141 NWRIVIIDPADDMNR--------------NAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLD 201 (351)
T ss_pred CceEEEEEchhhcCH--------------HHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCC
Confidence 456999999999832 2334466666642 3355666667889999999999 98 599999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCC
Q psy522 89 EKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 121 (131)
.++-..++.+......+. +..+..++..+.|-
T Consensus 202 ~~~~~~~L~~~~~~~~~~-~~~~~~i~~~s~G~ 233 (351)
T PRK09112 202 DDELKKALSHLGSSQGSD-GEITEALLQRSKGS 233 (351)
T ss_pred HHHHHHHHHHhhcccCCC-HHHHHHHHHHcCCC
Confidence 999999998743222211 22255566666664
No 103
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=8e-05 Score=54.94 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHH
Q psy522 38 RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~ 99 (131)
...+.+|+.++. ..+++++|.+|++++.+.|.+++ |+ ..+.+++|+.++..+.+...
T Consensus 147 ~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 147 AAANALLKTLEE--PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHHhcC--CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 345667777774 45678999999999999999999 99 58999999999988888653
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.0002 Score=57.37 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=67.9
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..|++|||+|.+-. ...+.++..++. ..+.+++|.+|+.++.|++.+++ |+. .+.+.+|+.
T Consensus 119 ~KV~IIDEa~~LT~--------------~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~ 179 (725)
T PRK07133 119 YKIYIIDEVHMLSK--------------SAFNALLKTLEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISE 179 (725)
T ss_pred CEEEEEEChhhCCH--------------HHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCH
Confidence 46999999998732 245556666664 34567888888889999999999 885 899999999
Q ss_pred HHHHHHHHHHhcCCCCCCc-ccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLAED-VNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~-~~~~~la~~t~g 120 (131)
++-...++..+...+..-+ ..+..++..+.|
T Consensus 180 eeI~~~L~~il~kegI~id~eAl~~LA~lS~G 211 (725)
T PRK07133 180 DEIVSRLEFILEKENISYEKNALKLIAKLSSG 211 (725)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999887766554422 235566666655
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00011 Score=58.00 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=67.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..||+|||+|.+-. ...+.++..++. ..+.+++|++|+.++.+.+.+++ |+. .+.|+.++.
T Consensus 120 ~kVIIIDEad~Lt~--------------~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~ 180 (624)
T PRK14959 120 YKVFIIDEAHMLTR--------------EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSE 180 (624)
T ss_pred ceEEEEEChHhCCH--------------HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCH
Confidence 46999999998832 234556666664 23568888889999999999998 884 789999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++-..+++..+...+.. .+..+..+++.+.|
T Consensus 181 ~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999998877765543 22335666766665
No 106
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00016 Score=56.70 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=69.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.++..++. ..+.+++|++|+.++.+.+.+++ |+. .+.+.+++.
T Consensus 120 ~KVvIIDEa~~Ls~--------------~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~ 180 (563)
T PRK06647 120 YRVYIIDEVHMLSN--------------SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSL 180 (563)
T ss_pred CEEEEEEChhhcCH--------------HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCH
Confidence 45899999988731 244556666664 34568888888888999999999 886 689999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHH
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADI 126 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di 126 (131)
++...+++..+...+.. .+..+..++..+.| +.+++
T Consensus 181 ~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~a 217 (563)
T PRK06647 181 EKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDA 217 (563)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 99999998887655544 22345666766665 34443
No 107
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00011 Score=57.77 Aligned_cols=91 Identities=19% Similarity=0.304 Sum_probs=66.3
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+-. ...+.++..++. ..+.+++|.+|+.+..+.+.+++ |+. .+.+++|+.+
T Consensus 121 KVIIIDEad~Lt~--------------~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~ 181 (605)
T PRK05896 121 KVYIIDEAHMLST--------------SAWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNS 181 (605)
T ss_pred EEEEEechHhCCH--------------HHHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHH
Confidence 4899999998731 133456666664 33467888888889999999999 885 7999999999
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+-...++..+...+.. ++..+..++..+.|
T Consensus 182 eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 182 ELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999887665533 22335666666665
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00019 Score=55.27 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=65.6
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
+-|++|||+|.+.. ...+.++..+... .+.+++|.+|+.++.+++.+.+ |+. .+.+++|+.
T Consensus 120 ~KVvIIDEad~Lt~--------------~a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~ 180 (486)
T PRK14953 120 YKVYIIDEAHMLTK--------------EAFNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTK 180 (486)
T ss_pred eeEEEEEChhhcCH--------------HHHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCH
Confidence 46999999997732 2334556666542 3345666666778889999998 875 799999999
Q ss_pred HHHHHHHHHHhcCCCCCC-cccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLAE-DVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~-~~~~~~la~~t~g 120 (131)
++...+++..++..+... +..+..++..+.|
T Consensus 181 ~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 181 EQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999999888766542 2336667776665
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.77 E-value=0.00022 Score=51.96 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=58.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
+.+|+|||+|.+-.. .... +...++... +...+|.+|+.+..+.+.+.+ |+ ..+.+.+|+.
T Consensus 126 ~~vlilDe~~~l~~~-----------~~~~---L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~ 186 (337)
T PRK12402 126 YKTILLDNAEALRED-----------AQQA---LRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTD 186 (337)
T ss_pred CcEEEEeCcccCCHH-----------HHHH---HHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCH
Confidence 469999999987321 1122 333333322 234455566667778788888 76 4789999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHc
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAK 118 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t 118 (131)
++...+++..+...+.. .+..+..++..+
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 99999999988766544 223355555554
No 110
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.0002 Score=54.79 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=67.1
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
....||+|||+|.+.. ...+.++..++.. .+.+++|++|+.++.+.+.+++ |+. .+.++++
T Consensus 120 ~~~kvvIIdead~lt~--------------~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l 180 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK--------------EAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRI 180 (451)
T ss_pred CCCEEEEEecHHhhCH--------------HHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCC
Confidence 3467999999988742 1345566666652 3467777888888999999999 884 7899999
Q ss_pred CHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 88 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+.++-...++..++..+.. .+..+..++..+.|
T Consensus 181 ~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 181 PEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999888888877655443 22335556666554
No 111
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00028 Score=57.65 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=69.5
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.++..|+. ..+.+.+|++|+.+..|.+.+++ |+ ..+.|++++.
T Consensus 120 ~KViIIDEAh~LT~--------------eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~ 180 (944)
T PRK14949 120 FKVYLIDEVHMLSR--------------SSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQ 180 (944)
T ss_pred cEEEEEechHhcCH--------------HHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCH
Confidence 46999999999832 355666766664 34567788888889999999999 88 5899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 121 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 121 (131)
++-.+.+++.+...++. .+..+..++..+.|-
T Consensus 181 eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd 213 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPFEAEALTLLAKAANGS 213 (944)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 99999999888654443 222366677777763
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00024 Score=52.22 Aligned_cols=72 Identities=19% Similarity=0.380 Sum_probs=56.3
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
..-|++||++|.+-. ...+.+++.++. ..+++++|.+|++++.+.+.+++ |+. .+.|++|+
T Consensus 106 ~~kv~iI~~a~~m~~--------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~~~~~~~~ 166 (328)
T PRK05707 106 GRKVVLIEPAEAMNR--------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-QQACPLPS 166 (328)
T ss_pred CCeEEEECChhhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-eeeCCCcC
Confidence 345788899998842 345566666664 33578899999999999999999 996 59999999
Q ss_pred HHHHHHHHHHH
Q psy522 89 EKTKRRIFNIH 99 (131)
Q Consensus 89 ~~~R~~il~~~ 99 (131)
.++-.+.+...
T Consensus 167 ~~~~~~~L~~~ 177 (328)
T PRK05707 167 NEESLQWLQQA 177 (328)
T ss_pred HHHHHHHHHHh
Confidence 99888777654
No 113
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00019 Score=56.03 Aligned_cols=92 Identities=15% Similarity=0.275 Sum_probs=65.9
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.++..++. ..+.+++|++|+.+..+.+.+++ |+ ..+++.+++.
T Consensus 120 ~kViIIDEa~~ls~--------------~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~ 180 (546)
T PRK14957 120 YKVYLIDEVHMLSK--------------QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQ 180 (546)
T ss_pred cEEEEEechhhccH--------------HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCH
Confidence 46999999988732 244556666664 23456777777778999988998 88 6899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++-...++..+...+.. .+..+..++..+.|
T Consensus 181 ~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 181 ADIKDQLKIILAKENINSDEQSLEYIAYHAKG 212 (546)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99888888877765544 22335666666654
No 114
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.71 E-value=0.00032 Score=53.02 Aligned_cols=91 Identities=24% Similarity=0.346 Sum_probs=61.2
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC-C-CCcccccccCCCccceEEEeCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-R-IETLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn-~-~~~id~~l~~~grf~~~i~~~~ 86 (131)
...||||||+|.+... ....++..++ .+.+++|++|. . ...+++++++ |+ ..+.+++
T Consensus 92 ~~~vL~IDEi~~l~~~--------------~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ 150 (413)
T PRK13342 92 RRTILFIDEIHRFNKA--------------QQDALLPHVE----DGTITLIGATTENPSFEVNPALLS--RA-QVFELKP 150 (413)
T ss_pred CceEEEEechhhhCHH--------------HHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCC
Confidence 5689999999987422 1223333333 35677777653 3 4578999999 98 6899999
Q ss_pred CCHHHHHHHHHHHhcCC--CC-C-CcccHHHHHHHcCC
Q psy522 87 PDEKTKRRIFNIHTSRM--TL-A-EDVNLQELIMAKDD 120 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~--~~-~-~~~~~~~la~~t~g 120 (131)
|+.++...+++..+... +. . .+..+..++..+.|
T Consensus 151 ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 151 LSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG 188 (413)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC
Confidence 99999999999887542 11 1 22235566666654
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00031 Score=55.28 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=66.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.++..++. ..+.+++|.+|+.++.+.+.+++ |+ ..+.|..++.
T Consensus 119 ~KVvIIDEah~Lt~--------------~A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~ 179 (584)
T PRK14952 119 YRIFIVDEAHMVTT--------------AGFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPP 179 (584)
T ss_pred ceEEEEECCCcCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCH
Confidence 35899999988732 245556666664 33568888888888999999999 86 5899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++-.++++..+...+.. .+..+..++..+.|
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99888998888766543 22234555555444
No 116
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.67 E-value=0.00051 Score=50.33 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH-----hc----CCCCCCCeEEEeeCCCCC------------c
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ-----LD----GFDSRGDVKVIMATNRIE------------T 67 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~-----~~----~~~~~~~v~vi~ttn~~~------------~ 67 (131)
.+.++++||+|..-++ ....++.+|+. +. .+...+.+.||||.|..+ .
T Consensus 134 ~g~illlDEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 134 HNVALCFDEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred CCeEEEechhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 4589999999986322 33455555542 11 122335688999999755 3
Q ss_pred ccccccCCCccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 68 LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 68 id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
++.+++. ||-..+.+++|+.++-.+|+......
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 5889999 99888899999999999999876543
No 117
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00012 Score=57.59 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=66.2
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+.. ...+.++..++. ..+.+++|.+|+.++.|.+.+++ |+. .+.|..++.+
T Consensus 121 KVvIIdev~~Lt~--------------~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~ 181 (576)
T PRK14965 121 KIFIIDEVHMLST--------------NAFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQ 181 (576)
T ss_pred eEEEEEChhhCCH--------------HHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHH
Confidence 4899999988732 234556666664 34568888888999999999999 874 7889999999
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+-...+...++..+.. .+..+..++..+.|
T Consensus 182 ~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 182 KIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 8888888877766544 22345556666655
No 118
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.60 E-value=0.00079 Score=50.94 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=22.6
Q ss_pred cccccCCCccceEEEeCCCCHHHHHHHHH
Q psy522 69 DPALIRPGRIDRKIEFPLPDEKTKRRIFN 97 (131)
Q Consensus 69 d~~l~~~grf~~~i~~~~P~~~~R~~il~ 97 (131)
.|+|+. |++..+.+.+.+.++...|+.
T Consensus 296 ~PEflg--Rld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 296 IPEFIG--RLPVVATLEELDEEALVRILT 322 (412)
T ss_pred hHHHhC--CCCeeeecCCCCHHHHHHHHH
Confidence 344444 999999999999999999997
No 119
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00057 Score=50.92 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=56.8
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..|-|++|||+|.+-. ...+.++..+.. ..+.+++|.+|+.++.+.+.+++ |+. .+.+++|
T Consensus 140 ~~~kVviIDead~m~~--------------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l 200 (365)
T PRK07471 140 GGWRVVIVDTADEMNA--------------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPL 200 (365)
T ss_pred CCCEEEEEechHhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCC
Confidence 4678999999998732 244456666653 23456788889999999999998 884 8999999
Q ss_pred CHHHHHHHHHHHh
Q psy522 88 DEKTKRRIFNIHT 100 (131)
Q Consensus 88 ~~~~R~~il~~~l 100 (131)
+.++-.+++....
T Consensus 201 ~~~~i~~~L~~~~ 213 (365)
T PRK07471 201 APEDVIDALAAAG 213 (365)
T ss_pred CHHHHHHHHHHhc
Confidence 9999888887753
No 120
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00037 Score=54.29 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..|++|||+|.+.. ...+.++..++. ..+.+++|.+|++++.+.+.+++ |+ ..+.|+.|+.
T Consensus 120 ~kVvIIDEad~ls~--------------~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~ 180 (527)
T PRK14969 120 FKVYIIDEVHMLSK--------------SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPP 180 (527)
T ss_pred ceEEEEcCcccCCH--------------HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCH
Confidence 35999999998732 234556666664 33567788888889999988998 87 5899999999
Q ss_pred HHHHHHHHHHhcCCCCCC-cccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLAE-DVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~-~~~~~~la~~t~g 120 (131)
++-...+...+...+... +..+..++..+.|
T Consensus 181 ~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 181 PLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 998888888876555442 2335666666655
No 121
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.00036 Score=55.66 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=69.5
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
..|++|||+|.+-. ...+.++..++. ..+.+.+|.+|+.++.+.+.+++ |+ ..+.|+.++.
T Consensus 120 ~KVIIIDEad~Ls~--------------~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~ 180 (709)
T PRK08691 120 YKVYIIDEVHMLSK--------------SAFNAMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTA 180 (709)
T ss_pred cEEEEEECccccCH--------------HHHHHHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCH
Confidence 46999999987631 234456666664 23567888888999999999998 88 4788889999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHH
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~ 127 (131)
++-...+++.+...++. .+..+..|+..+.| +.+++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAl 218 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDAL 218 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHH
Confidence 99999999988876654 22336666666554 344443
No 122
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.59 E-value=0.00041 Score=48.26 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC-----CC-----------CCeEEEeeCCCCCcccccc
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----SR-----------GDVKVIMATNRIETLDPAL 72 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-----------~~v~vi~ttn~~~~id~~l 72 (131)
...||||||++.+-.. +...++..|++.. .. ++..+||+|.....+.+.+
T Consensus 101 ~~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pL 166 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPL 166 (233)
T ss_dssp TT-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCC
T ss_pred CCcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhH
Confidence 4689999999998432 2222333333210 11 4689999999999999999
Q ss_pred cCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCC
Q psy522 73 IRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 121 (131)
Q Consensus 73 ~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 121 (131)
+. ||.....+..=+.++-.+|++......++. .+.-..++|.++.|-
T Consensus 167 rd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 167 RD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp CT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred Hh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 99 999888999999999999998877666655 333477788888774
No 123
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.58 E-value=0.0008 Score=48.65 Aligned_cols=92 Identities=13% Similarity=0.233 Sum_probs=63.2
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
+.+|+|||+|.+... ....++..++... +...+|.++|.+..+.+.+.+ |+. .+++++|+.
T Consensus 103 ~~vviiDe~~~l~~~--------------~~~~L~~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~ 163 (319)
T PRK00440 103 FKIIFLDEADNLTSD--------------AQQALRRTMEMYS--QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKK 163 (319)
T ss_pred ceEEEEeCcccCCHH--------------HHHHHHHHHhcCC--CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCH
Confidence 568999999988321 1123344444332 335566677888888888888 875 589999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++...+++.+++..+.. .+..+..++..+.|
T Consensus 164 ~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 164 EAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999999988766553 33346667776655
No 124
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00029 Score=55.98 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=61.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHH--HHHHHhcCCCCC----CCeEEEeeCCCCCcccccccCCC
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTML--ELLNQLDGFDSR----GDVKVIMATNRIETLDPALIRPG 76 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~----~~v~vi~ttn~~~~id~~l~~~g 76 (131)
.+|....| +++|||+|.+...- .+++. +.+..++. +--+..|.+-.- +.|++|+|+|+.+.||..++.
T Consensus 412 kka~~~NP-v~LLDEIDKm~ss~--rGDPa-SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD-- 485 (782)
T COG0466 412 KKAGVKNP-VFLLDEIDKMGSSF--RGDPA-SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD-- 485 (782)
T ss_pred HHhCCcCC-eEEeechhhccCCC--CCChH-HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--
Confidence 34555666 77889999997543 12222 12222221 001112222221 479999999999999999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHh
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l 100 (131)
|.+ .|.+.-=+.++..+|-+.||
T Consensus 486 RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 486 RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cee-eeeecCCChHHHHHHHHHhc
Confidence 996 78888889999999999886
No 125
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.56 E-value=0.0025 Score=44.93 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=70.7
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-CCC-CCCeEEEeeCCCCCcccccccC----------
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDS-RGDVKVIMATNRIETLDPALIR---------- 74 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~v~vi~ttn~~~~id~~l~~---------- 74 (131)
...+-|||+|++- |... +. .-..+...+++ +.. .++|++.+|+|+-+.+++.+..
T Consensus 104 ~~~kFIlf~DDLs--Fe~~-------d~----~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih 170 (249)
T PF05673_consen 104 RPYKFILFCDDLS--FEEG-------DT----EYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIH 170 (249)
T ss_pred CCCCEEEEecCCC--CCCC-------cH----HHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccC
Confidence 3457899999863 3322 11 11223333454 322 3579999999988777664432
Q ss_pred -----------CCccceEEEeCCCCHHHHHHHHHHHhcCCCCCCc-ccHHH----HHHHcCCCCHHHHHHh
Q psy522 75 -----------PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQE----LIMAKDDLSGADIKAI 129 (131)
Q Consensus 75 -----------~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~-~~~~~----la~~t~g~s~~di~~l 129 (131)
..||...|.|.+|+.++-.+|+++++...++.-+ ..+.. .|..-.|.||+-=.+.
T Consensus 171 ~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF 241 (249)
T PF05673_consen 171 PSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQF 241 (249)
T ss_pred cchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2389999999999999999999999987766532 22222 2333456777654443
No 126
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.54 E-value=0.00039 Score=50.97 Aligned_cols=78 Identities=27% Similarity=0.366 Sum_probs=53.5
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH----hcC---CCCCCCeEEEeeCC-----CCCcccccccCCCcc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ----LDG---FDSRGDVKVIMATN-----RIETLDPALIRPGRI 78 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~~~~~v~vi~ttn-----~~~~id~~l~~~grf 78 (131)
+|+++||++..-++ ....+.+.++. ..+ +.-..+.+||+|.| ....+++++++ ||
T Consensus 114 ~ill~DEInra~p~-----------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf 180 (329)
T COG0714 114 VILLLDEINRAPPE-----------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RF 180 (329)
T ss_pred eEEEEeccccCCHH-----------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hE
Confidence 59999999775322 23344444433 111 22336789999999 67778999999 99
Q ss_pred ceEEEeCCC-CHHHHHHHHHHHhc
Q psy522 79 DRKIEFPLP-DEKTKRRIFNIHTS 101 (131)
Q Consensus 79 ~~~i~~~~P-~~~~R~~il~~~l~ 101 (131)
-..++++.| ..++...+......
T Consensus 181 ~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 181 LLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEEecCCCCchHHHHHHHHhCcc
Confidence 999999999 66666666665543
No 127
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00049 Score=51.43 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=56.5
Q ss_pred CHHHHHhcC----CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC-C-CCcccccccC
Q psy522 1 LFRVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-R-IETLDPALIR 74 (131)
Q Consensus 1 vF~~A~~~~----p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn-~-~~~id~~l~~ 74 (131)
+|+.|++.. ..|||+||+..+-..+ ...||-.+ +.+.+++||+|. + .-++.+++++
T Consensus 92 i~e~a~~~~~~gr~tiLflDEIHRfnK~Q--------------QD~lLp~v----E~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 92 IIEEARKNRLLGRRTILFLDEIHRFNKAQ--------------QDALLPHV----ENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHHHHHHHhcCCceEEEEehhhhcChhh--------------hhhhhhhh----cCCeEEEEeccCCCCCeeecHHHhh
Confidence 366775443 5899999999985433 12233333 467888998665 4 4568999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHHHh
Q psy522 75 PGRIDRKIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 75 ~grf~~~i~~~~P~~~~R~~il~~~l 100 (131)
|. ..+.+.+.+.++-.++++..+
T Consensus 154 --R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 154 --RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred --hh-heeeeecCCHHHHHHHHHHHH
Confidence 87 367888889999999998843
No 128
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00056 Score=52.93 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=71.7
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||++-+. ...++.+|..+.. ....|++|.+|..++.+|..+++ |+. ++.+...+.
T Consensus 120 yKVyiIDEvHMLS--------------~~afNALLKTLEE--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~ 180 (515)
T COG2812 120 YKVYIIDEVHMLS--------------KQAFNALLKTLEE--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDL 180 (515)
T ss_pred ceEEEEecHHhhh--------------HHHHHHHhccccc--CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCH
Confidence 4588899987662 2466777766653 34579999999999999999999 984 788899999
Q ss_pred HHHHHHHHHHhcCCCCCCcc-cHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLAEDV-NLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~~-~~~~la~~t~g 120 (131)
++-...+.+.+...++.-+. -+.-++...+|
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 99999999999888777443 36667777776
No 129
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00052 Score=55.57 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=57.3
Q ss_pred HHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC--CCC-------CCCeEEEeeCCCC---------
Q psy522 4 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG--FDS-------RGDVKVIMATNRI--------- 65 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-------~~~v~vi~ttn~~--------- 65 (131)
..+++..+||||||+|.+-+ .+.+.++..++. +.. -.++++|+|||.-
T Consensus 552 ~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~ 617 (758)
T PRK11034 552 AVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_pred HHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhccc
Confidence 34556679999999999832 234444444442 111 1368899999932
Q ss_pred ----------------CcccccccCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 66 ----------------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 66 ----------------~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
..+.|.++. |+|..|.|++.+.++..+|+..++.
T Consensus 618 g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 618 GLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 124577777 9999999999999999999987754
No 130
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.50 E-value=0.001 Score=50.29 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=36.9
Q ss_pred ccccCCCccceEEEeCCCCHHHHHHHHHHH----hcC-------CCCC---CcccHHHHHHH--cCCCCHHHHHHhh
Q psy522 70 PALIRPGRIDRKIEFPLPDEKTKRRIFNIH----TSR-------MTLA---EDVNLQELIMA--KDDLSGADIKAIC 130 (131)
Q Consensus 70 ~~l~~~grf~~~i~~~~P~~~~R~~il~~~----l~~-------~~~~---~~~~~~~la~~--t~g~s~~di~~l~ 130 (131)
|+|+. |++..+.+.+.+.++...|+..- +++ .++. .+.-+..+++. ..+|-.+-|..++
T Consensus 303 PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~ii 377 (413)
T TIGR00382 303 PEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIV 377 (413)
T ss_pred HHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHH
Confidence 55555 99999999999999999998652 221 1222 12226667765 2445556665543
No 131
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.50 E-value=0.00059 Score=46.69 Aligned_cols=105 Identities=17% Similarity=0.303 Sum_probs=54.3
Q ss_pred CeEEEeccccccc-CcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc------ccccCCCccceEE
Q psy522 10 PSIVFIDEIDAVG-TKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD------PALIRPGRIDRKI 82 (131)
Q Consensus 10 p~ii~iDe~d~l~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id------~~l~~~grf~~~i 82 (131)
..||+|||++.+. ... .... .+..+.+.++......++.+|.+........ ..+. ||+.. +
T Consensus 119 ~~iiviDe~~~~~~~~~------~~~~---~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~ 186 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASE------EDKD---FLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-I 186 (234)
T ss_dssp CEEEEEETGGGGGBCTT------TTHH---HHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-E
T ss_pred cEEEEEecHHHHhhccc------chHH---HHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-E
Confidence 4899999999998 221 1122 3333333334333344444444333321111 1222 47776 9
Q ss_pred EeCCCCHHHHHHHHHHHhcCCC-C-CCcccHHHHHHHcCCCCHHHHH
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMT-L-AEDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~-~-~~~~~~~~la~~t~g~s~~di~ 127 (131)
.+++.+.++..+++...+.... + ..+.++..+...|.|+ |.-|.
T Consensus 187 ~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 187 ELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp EE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred EEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHHh
Confidence 9999999999999999876651 1 2556788899999997 44443
No 132
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00073 Score=53.31 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=67.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-||+|||+|.+-. ...+.++..++.. .+.+++|.+|+.++.+.+.+++ |+. .+.|..++.
T Consensus 121 ~kVvIIDEa~~L~~--------------~a~naLLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~ 181 (585)
T PRK14950 121 YKVYIIDEVHMLST--------------AAFNALLKTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSV 181 (585)
T ss_pred eEEEEEeChHhCCH--------------HHHHHHHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCH
Confidence 45899999987732 2344566666643 2456777777778888888988 874 688999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHH
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~ 127 (131)
++-..+++..+...+.. .+..+..++..+.| +..++.
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al 219 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAE 219 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 99888888887665543 22235666666665 444443
No 133
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00025 Score=57.11 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=62.2
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc-----ccccccCCCc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET-----LDPALIRPGR 77 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~-----id~~l~~~gr 77 (131)
+..+...+.|+||||++.+.+...+.++ .-....++.-.| ..+.+-+||+|..-+. =|+|+-| |
T Consensus 256 ~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaL-------ARGeL~~IGATT~~EYRk~iEKD~AL~R--R 324 (786)
T COG0542 256 KEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPAL-------ARGELRCIGATTLDEYRKYIEKDAALER--R 324 (786)
T ss_pred HHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHH-------hcCCeEEEEeccHHHHHHHhhhchHHHh--c
Confidence 4556667999999999999988754332 122233444333 3466778888875333 3899999 9
Q ss_pred cceEEEeCCCCHHHHHHHHHHHh
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~l 100 (131)
|. .|.+.-|+.++-..|++-+-
T Consensus 325 FQ-~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 325 FQ-KVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred Cc-eeeCCCCCHHHHHHHHHHHH
Confidence 96 89999999999999997653
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00062 Score=54.02 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=64.5
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.++..++. ..+.+++|++|++++.+-+.+++ |+ ..+.|..++.
T Consensus 122 ~KViIIDEad~Lt~--------------~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~ 182 (620)
T PRK14948 122 WKVYVIDECHMLST--------------AAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPL 182 (620)
T ss_pred ceEEEEECccccCH--------------HHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCH
Confidence 35999999998832 244566766664 33567888888889999999999 88 4788888888
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++-...+.+.....+.. ....+..+++.+.|
T Consensus 183 ~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 183 EAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 88777777766654433 22236666666665
No 135
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00056 Score=43.04 Aligned_cols=68 Identities=43% Similarity=0.618 Sum_probs=42.7
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-CCCCCCeEEEeeCCCCC--cccccccCCCccceE
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDSRGDVKVIMATNRIE--TLDPALIRPGRIDRK 81 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~v~vi~ttn~~~--~id~~l~~~grf~~~ 81 (131)
+....+.+|++||++.+... ....+..++..... .....++.+|+++|... .+++.+.+ ||+..
T Consensus 80 ~~~~~~~~lilDe~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~ 146 (151)
T cd00009 80 AEKAKPGVLFIDEIDSLSRG-----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIR 146 (151)
T ss_pred hccCCCeEEEEeChhhhhHH-----------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccE
Confidence 44567899999999987211 11122222222211 01135788889998776 77888888 99877
Q ss_pred EEeC
Q psy522 82 IEFP 85 (131)
Q Consensus 82 i~~~ 85 (131)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 7775
No 136
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.00096 Score=52.71 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=67.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+.. ...+.++..++. ..+.+++|.+|+.++.+.+.+++ |+ ..+.+..|+.
T Consensus 133 ~KVvIIDEad~Ls~--------------~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~ 193 (598)
T PRK09111 133 YKVYIIDEVHMLST--------------AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEA 193 (598)
T ss_pred cEEEEEEChHhCCH--------------HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCH
Confidence 46899999988732 234556666654 23457777777888889889998 88 4799999999
Q ss_pred HHHHHHHHHHhcCCCCCC-cccHHHHHHHcCCCCHHHH
Q psy522 90 KTKRRIFNIHTSRMTLAE-DVNLQELIMAKDDLSGADI 126 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~di 126 (131)
++-..+++..++..+..- +..+..++..+.| +.+++
T Consensus 194 ~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~a 230 (598)
T PRK09111 194 DVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDG 230 (598)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 999999988877665442 2335556666655 34433
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.44 E-value=0.00056 Score=55.25 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=58.2
Q ss_pred HHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCC--C-------CCCCeEEEeeCCCCC--------
Q psy522 4 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF--D-------SRGDVKVIMATNRIE-------- 66 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-------~~~~v~vi~ttn~~~-------- 66 (131)
..+.+..+||+|||+|.+-+ ...+.+++.+++- . .-.++++|+|||...
T Consensus 548 ~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~ 613 (731)
T TIGR02639 548 AVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPI 613 (731)
T ss_pred HHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccC
Confidence 34567789999999997632 2334444444431 0 113578999998632
Q ss_pred -----------------cccccccCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 67 -----------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 67 -----------------~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
.+.|.++. |+|..+.|.+.+.++..+|++..+.
T Consensus 614 ~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 614 GFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 14567776 9999999999999999999998875
No 138
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.44 E-value=0.00083 Score=47.76 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=52.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh----cCC-------CCCCCeEEEeeCCCC-----Cccccccc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL----DGF-------DSRGDVKVIMATNRI-----ETLDPALI 73 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~-------~~~~~v~vi~ttn~~-----~~id~~l~ 73 (131)
+.+|++||+|.+-+. ....+..+++.- .+. ...++..+|+|+|.. ..++++++
T Consensus 106 g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 106 GFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL 174 (262)
T ss_pred CCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence 479999999985321 223334444320 000 112357799999965 35689999
Q ss_pred CCCccceEEEeCCCCHHHHHHHHHHHh
Q psy522 74 RPGRIDRKIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 74 ~~grf~~~i~~~~P~~~~R~~il~~~l 100 (131)
+ || ..++++.|+.++-.+|++...
T Consensus 175 ~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 175 D--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred h--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 9 99 589999999999999998754
No 139
>KOG0989|consensus
Probab=97.43 E-value=0.00075 Score=48.90 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=65.0
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+..+ ....+...|+. ....+.+|..||+++.|+.-+.+ |+. .+.|++...+
T Consensus 131 KiiIlDEcdsmtsd--------------aq~aLrr~mE~--~s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~ 191 (346)
T KOG0989|consen 131 KIIILDECDSMTSD--------------AQAALRRTMED--FSRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDE 191 (346)
T ss_pred eEEEEechhhhhHH--------------HHHHHHHHHhc--cccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchH
Confidence 68999999998533 33344445554 23468899999999999999999 986 5667777666
Q ss_pred HHHHHHHHHhcCCCCCCc-ccHHHHHHHcCC
Q psy522 91 TKRRIFNIHTSRMTLAED-VNLQELIMAKDD 120 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~~~-~~~~~la~~t~g 120 (131)
....-|+......++.-+ .-++.+++.++|
T Consensus 192 ~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 192 DIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 666677777666655532 337777877766
No 140
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0015 Score=47.91 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=53.2
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++||++|.+-. ...+.+|+.++. ..+++++|.+|+.++.+.|.+++ |+. .+.+++|+.+
T Consensus 115 kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~ 175 (319)
T PRK08769 115 QVVIVDPADAINR--------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAH 175 (319)
T ss_pred EEEEeccHhhhCH--------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHH
Confidence 5899999999832 344556666664 34568888889999999999999 995 7899999998
Q ss_pred HHHHHHHH
Q psy522 91 TKRRIFNI 98 (131)
Q Consensus 91 ~R~~il~~ 98 (131)
+-.+.+..
T Consensus 176 ~~~~~L~~ 183 (319)
T PRK08769 176 EALAWLLA 183 (319)
T ss_pred HHHHHHHH
Confidence 87766653
No 141
>KOG2004|consensus
Probab=97.40 E-value=0.00057 Score=54.51 Aligned_cols=87 Identities=22% Similarity=0.362 Sum_probs=57.3
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHH-----HHHHHHhcCCC-CCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTM-----LELLNQLDGFD-SRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~-~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
.+.| +++|||+|.+... ..+++.+ .+..++ ..|+...=++. .-.+|++|+|+|..+.||+.++. |.+
T Consensus 504 t~NP-liLiDEvDKlG~g--~qGDPas-ALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME- 576 (906)
T KOG2004|consen 504 TENP-LILIDEVDKLGSG--HQGDPAS-ALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME- 576 (906)
T ss_pred CCCc-eEEeehhhhhCCC--CCCChHH-HHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-
Confidence 3444 7888999999732 2222222 111222 12221111111 12579999999999999999999 996
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy522 81 KIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l 100 (131)
.|.++-=..++..+|-+.||
T Consensus 577 vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 577 VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eeeccCccHHHHHHHHHHhh
Confidence 78888778899999998886
No 142
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.36 E-value=0.00074 Score=51.49 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeeCCCCC----cccccccCCCccceEEEeCC
Q psy522 50 FDSRGDVKVIMATNRIE----TLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 50 ~~~~~~v~vi~ttn~~~----~id~~l~~~grf~~~i~~~~ 86 (131)
+....++.+|||+|..+ .+|.|++| ||. .|.+.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 33446799999999877 79999999 995 566665
No 143
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.36 E-value=0.00083 Score=49.48 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=52.7
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh------cCC--CCCCCeEEEeeCCCCC-cccccccCCCccceE
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL------DGF--DSRGDVKVIMATNRIE-TLDPALIRPGRIDRK 81 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~--~~~~~v~vi~ttn~~~-~id~~l~~~grf~~~ 81 (131)
.+||+||++.+-.+ ....+.+.+..- ++. ....++++++|+|-.+ .++++++. ||...
T Consensus 130 GiL~lDEInrl~~~-----------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~ 196 (334)
T PRK13407 130 GYLYIDEVNLLEDH-----------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLS 196 (334)
T ss_pred CeEEecChHhCCHH-----------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceE
Confidence 58999999987321 223333333211 111 1124689999988534 58999999 99999
Q ss_pred EEeCCCCH-HHHHHHHHHHh
Q psy522 82 IEFPLPDE-KTKRRIFNIHT 100 (131)
Q Consensus 82 i~~~~P~~-~~R~~il~~~l 100 (131)
+.+++|.. ++|.+|++...
T Consensus 197 v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 197 VEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred EEcCCCCcHHHHHHHHHHhh
Confidence 99999866 99999998754
No 144
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.00088 Score=49.04 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=54.7
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
--|++||++|.+-. ...+.+|+.++. ..+++++|.+|+.++.+-|.+++ |+. .+.+++|+.
T Consensus 109 ~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~ 169 (319)
T PRK06090 109 YRLFVIEPADAMNE--------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPST 169 (319)
T ss_pred ceEEEecchhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCH
Confidence 35888888888732 345667776764 44578999999999999999999 995 889999999
Q ss_pred HHHHHHHHH
Q psy522 90 KTKRRIFNI 98 (131)
Q Consensus 90 ~~R~~il~~ 98 (131)
++-.+.+..
T Consensus 170 ~~~~~~L~~ 178 (319)
T PRK06090 170 AQAMQWLKG 178 (319)
T ss_pred HHHHHHHHH
Confidence 988777654
No 145
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.00088 Score=49.17 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=54.3
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++||++|.+-. ...+.+|+.++. +.+.+++|.+|+.++.+.+.+++ |+. .+.+++|+.+
T Consensus 109 KV~iI~~a~~m~~--------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~ 169 (325)
T PRK06871 109 KVVYIQGAERLTE--------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQ 169 (325)
T ss_pred eEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHH
Confidence 4788888888732 345566766664 44678899999999999999999 984 7899999999
Q ss_pred HHHHHHHHH
Q psy522 91 TKRRIFNIH 99 (131)
Q Consensus 91 ~R~~il~~~ 99 (131)
+-.+.+...
T Consensus 170 ~~~~~L~~~ 178 (325)
T PRK06871 170 QALDWLQAQ 178 (325)
T ss_pred HHHHHHHHH
Confidence 887777653
No 146
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.27 E-value=0.0049 Score=48.99 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=38.7
Q ss_pred CeEEEe-eCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCC
Q psy522 55 DVKVIM-ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL 105 (131)
Q Consensus 55 ~v~vi~-ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~ 105 (131)
.+++|+ ||+.++.+++++++ ||. .+.+++.+.++...|++..+.....
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v 371 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINV 371 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 355555 55678999999999 997 6788999999999999999876543
No 147
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0008 Score=49.58 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=55.2
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
--|++||++|.+-. ...+.+|+.++. +.+++++|.+|++++.+.+.++| |+. .+.+++|+.
T Consensus 109 ~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~ 169 (334)
T PRK07993 109 AKVVWLPDAALLTD--------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPE 169 (334)
T ss_pred ceEEEEcchHhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCH
Confidence 45888888888732 355667777774 45678999999999999999999 986 689999999
Q ss_pred HHHHHHHHH
Q psy522 90 KTKRRIFNI 98 (131)
Q Consensus 90 ~~R~~il~~ 98 (131)
++-.+.+..
T Consensus 170 ~~~~~~L~~ 178 (334)
T PRK07993 170 QYALTWLSR 178 (334)
T ss_pred HHHHHHHHH
Confidence 887777653
No 148
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.23 E-value=0.0016 Score=52.52 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=51.2
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC-C-CCcccccccCCCccceEEEeCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-R-IETLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn-~-~~~id~~l~~~grf~~~i~~~~ 86 (131)
...+|||||+|.+.... ...++..++ .+.+++|++|. . ...+++++++ |+ ..+.+++
T Consensus 109 ~~~IL~IDEIh~Ln~~q--------------QdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~p 167 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ--------------QDALLPWVE----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKS 167 (725)
T ss_pred CceEEEEeChhhCCHHH--------------HHHHHHHhc----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCC
Confidence 45799999999874221 122333332 35677777654 3 3568899998 75 4689999
Q ss_pred CCHHHHHHHHHHHhc
Q psy522 87 PDEKTKRRIFNIHTS 101 (131)
Q Consensus 87 P~~~~R~~il~~~l~ 101 (131)
++.++...+++..+.
T Consensus 168 Ls~edi~~IL~~~l~ 182 (725)
T PRK13341 168 LSDEDLHQLLKRALQ 182 (725)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999886
No 149
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.23 E-value=0.0015 Score=46.19 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=41.6
Q ss_pred ccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-----CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 72 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 72 l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
+.+ |+...+++++.+.++-.+++.+.+...+.. .+..+..+...+.|.. ..|..+|
T Consensus 179 l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~ 239 (269)
T TIGR03015 179 LRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILC 239 (269)
T ss_pred HHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHH
Confidence 555 788889999999999999999888654321 2235777889999984 4476665
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.19 E-value=0.0015 Score=48.17 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=52.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh------cCCC--CCCCeEEEeeCCCCC-cccccccCCCccce
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL------DGFD--SRGDVKVIMATNRIE-TLDPALIRPGRIDR 80 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~--~~~~v~vi~ttn~~~-~id~~l~~~grf~~ 80 (131)
..+||+||++.+-.+ ....+.+.+..= ++.. ...++++|+|.|-.+ .+++++.. ||..
T Consensus 132 ~GvL~lDEi~~L~~~-----------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l 198 (337)
T TIGR02030 132 RGILYIDEVNLLEDH-----------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGL 198 (337)
T ss_pred CCEEEecChHhCCHH-----------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcce
Confidence 478999999987321 222333333210 1111 123688888888544 68999999 9999
Q ss_pred EEEeCCCCH-HHHHHHHHHH
Q psy522 81 KIEFPLPDE-KTKRRIFNIH 99 (131)
Q Consensus 81 ~i~~~~P~~-~~R~~il~~~ 99 (131)
.+.++.|.. ++|.+|++..
T Consensus 199 ~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 199 HAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 999999965 8999999874
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.11 E-value=0.0037 Score=51.42 Aligned_cols=111 Identities=14% Similarity=0.275 Sum_probs=68.4
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCC--CC-------CCCeEEEeeCCCCCc------
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF--DS-------RGDVKVIMATNRIET------ 67 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~-------~~~v~vi~ttn~~~~------ 67 (131)
+..++++.+||+|||+|..-+ ...+.++..++.= .. -.+.++|.|||....
T Consensus 662 ~~v~~~p~svvllDEieka~~--------------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEKAHP--------------DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred HHHHhCCCcEEEEechhhcCH--------------HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 345678889999999986421 1333344444421 01 145889999885211
Q ss_pred -----------------------ccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC--------CCC---CcccHHH
Q psy522 68 -----------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--------TLA---EDVNLQE 113 (131)
Q Consensus 68 -----------------------id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~--------~~~---~~~~~~~ 113 (131)
+.|+|++ |++ .|.|.+.+.++-.+|+...+... +.. .+.-+..
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~ 804 (852)
T TIGR03345 728 ADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEH 804 (852)
T ss_pred cCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHH
Confidence 4566777 897 88999999999999998876431 222 1222555
Q ss_pred HHHHcCC--CCHHHHHHhh
Q psy522 114 LIMAKDD--LSGADIKAIC 130 (131)
Q Consensus 114 la~~t~g--~s~~di~~l~ 130 (131)
|+....+ |-.+.|..++
T Consensus 805 La~~g~~~~~GAR~L~r~I 823 (852)
T TIGR03345 805 IVARCTEVESGARNIDAIL 823 (852)
T ss_pred HHHHcCCCCCChHHHHHHH
Confidence 6666432 4456665544
No 152
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0016 Score=47.79 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=52.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.++..++. ..+.+++|.+|+.++.+.+.+++ |+. .+++++|+.
T Consensus 111 ~kvviI~~a~~~~~--------------~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~ 171 (329)
T PRK08058 111 KKVYIIEHADKMTA--------------SAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPP 171 (329)
T ss_pred ceEEEeehHhhhCH--------------HHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCH
Confidence 35888899887732 244567777764 34567788888899999999999 884 799999999
Q ss_pred HHHHHHHHH
Q psy522 90 KTKRRIFNI 98 (131)
Q Consensus 90 ~~R~~il~~ 98 (131)
++-...++.
T Consensus 172 ~~~~~~L~~ 180 (329)
T PRK08058 172 ESLIQRLQE 180 (329)
T ss_pred HHHHHHHHH
Confidence 887666653
No 153
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.0015 Score=40.60 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=45.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC-CCcccccccCCCccce
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR-IETLDPALIRPGRIDR 80 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~-~~~id~~l~~~grf~~ 80 (131)
++.|+...|.+|++||++.+...... .. ....................+|+++|. ....+..+.. |++.
T Consensus 71 ~~~~~~~~~~viiiDei~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~ 140 (148)
T smart00382 71 LALARKLKPDVLILDEITSLLDAEQE-------AL-LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDR 140 (148)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHH-------HH-HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccce
Confidence 56777778899999999998755410 00 000000000111123356788888886 5556666666 8888
Q ss_pred EEEeCCC
Q psy522 81 KIEFPLP 87 (131)
Q Consensus 81 ~i~~~~P 87 (131)
.+.+..+
T Consensus 141 ~~~~~~~ 147 (148)
T smart00382 141 RIVLLLI 147 (148)
T ss_pred EEEecCC
Confidence 8887665
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.005 Score=48.95 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=65.4
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+.. ...+.++..++.. .+.+++|.+|+.+..|-+.+++ |+. .+.+.+++.+
T Consensus 123 KVvIIdea~~Ls~--------------~a~naLLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ 183 (614)
T PRK14971 123 KIYIIDEVHMLSQ--------------AAFNAFLKTLEEP--PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVA 183 (614)
T ss_pred EEEEEECcccCCH--------------HHHHHHHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHH
Confidence 3899999888732 2445666666643 3456677777778899999999 874 6999999999
Q ss_pred HHHHHHHHHhcCCCCCCc-ccHHHHHHHcCC
Q psy522 91 TKRRIFNIHTSRMTLAED-VNLQELIMAKDD 120 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~~~-~~~~~la~~t~g 120 (131)
+-...++..+...+..-+ ..+..++..+.|
T Consensus 184 ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 184 DIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 988888888776665532 236667776654
No 155
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.0065 Score=44.23 Aligned_cols=89 Identities=9% Similarity=0.181 Sum_probs=59.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++||++|.+-. ...+.++..++. ..+.+++|.+|++++.+.+.+++ |+. .+.+++|+.
T Consensus 94 ~kv~iI~~ad~m~~--------------~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~ 154 (313)
T PRK05564 94 KKVIIIYNSEKMTE--------------QAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RCQ-IYKLNRLSK 154 (313)
T ss_pred ceEEEEechhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hce-eeeCCCcCH
Confidence 45888899887731 244566666764 33456666677889999999999 884 899999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 120 (131)
++-..+++....+ . .+.....++..+.|
T Consensus 155 ~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 155 EEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred HHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 9887777655432 1 12234445555555
No 156
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0017 Score=48.85 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=61.4
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-|++|||+|.+.. ...+.++..++. ..+..++|.+|+.+..+.+.+++ |+. .+.+.+++.+
T Consensus 129 kvvIIdea~~l~~--------------~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ 189 (397)
T PRK14955 129 RVYIIDEVHMLSI--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLE 189 (397)
T ss_pred EEEEEeChhhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHH
Confidence 5889999988732 123345555553 23456666677778889889988 775 7889999998
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+-...++..++..+.. .+..+..++..+.|
T Consensus 190 ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 190 EIQQQLQGICEAEGISVDADALQLIGRKAQG 220 (397)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888888877654433 22235556666655
No 157
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.014 Score=41.19 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=60.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-CCCC-CCeEEEeeCCCCCccccccc-------------
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDSR-GDVKVIMATNRIETLDPALI------------- 73 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~v~vi~ttn~~~~id~~l~------------- 73 (131)
.+-|||+|++- |.. .. ...+.+...| ++ +... .+|++-+|+|+.+.|++.+.
T Consensus 139 ~kFIlFcDDLS--Fe~-------gd-~~yK~LKs~L---eG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~e 205 (287)
T COG2607 139 EKFILFCDDLS--FEE-------GD-DAYKALKSAL---EGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSE 205 (287)
T ss_pred ceEEEEecCCC--CCC-------Cc-hHHHHHHHHh---cCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhH
Confidence 46889999872 211 11 1223344333 44 3333 57999999999888874332
Q ss_pred -------CCCccceEEEeCCCCHHHHHHHHHHHhcCCCCCC
Q psy522 74 -------RPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE 107 (131)
Q Consensus 74 -------~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~ 107 (131)
-..||+..+.|.+|+.++-..|+.+|.++++++-
T Consensus 206 aveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 206 AVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred HHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 2348999999999999999999999999888774
No 158
>PHA02244 ATPase-like protein
Probab=97.03 E-value=0.0077 Score=45.03 Aligned_cols=70 Identities=27% Similarity=0.349 Sum_probs=46.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHH-----HhcCC-CCCCCeEEEeeCCCC-----------Cccccc
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLN-----QLDGF-DSRGDVKVIMATNRI-----------ETLDPA 71 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~-~~~~~v~vi~ttn~~-----------~~id~~ 71 (131)
...+++|||++.+-+. ....++.++. ..++. ...+++.+|+|+|.+ ..++++
T Consensus 180 ~GgvLiLDEId~a~p~-----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~A 248 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA 248 (383)
T ss_pred cCCEEEEeCcCcCCHH-----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHH
Confidence 4589999999987432 2233333332 11111 223578999999963 578999
Q ss_pred ccCCCccceEEEeCCCCHHHH
Q psy522 72 LIRPGRIDRKIEFPLPDEKTK 92 (131)
Q Consensus 72 l~~~grf~~~i~~~~P~~~~R 92 (131)
++. ||- .|++..|+.-+.
T Consensus 249 llD--RFv-~I~~dyp~~~E~ 266 (383)
T PHA02244 249 TLD--RFA-PIEFDYDEKIEH 266 (383)
T ss_pred HHh--hcE-EeeCCCCcHHHH
Confidence 999 995 799999984443
No 159
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0065 Score=44.44 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=61.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++||++|.+-. ...+.++..++... +.++|..|+.++.+-+.+++ |+ ..+.+++|+.
T Consensus 125 ~kVvII~~ae~m~~--------------~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~ 184 (314)
T PRK07399 125 RKVVVIEDAETMNE--------------AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSD 184 (314)
T ss_pred ceEEEEEchhhcCH--------------HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCH
Confidence 46788888877632 24455666666543 44677777899999999999 98 5899999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHcCCC
Q psy522 90 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 121 (131)
++-.+++........ .+.+...++....|=
T Consensus 185 ~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs 214 (314)
T PRK07399 185 EQLEQVLKRLGDEEI--LNINFPELLALAQGS 214 (314)
T ss_pred HHHHHHHHHhhcccc--chhHHHHHHHHcCCC
Confidence 998888887533211 112245566655553
No 160
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0096 Score=43.11 Aligned_cols=67 Identities=16% Similarity=0.345 Sum_probs=47.9
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++||++|.+-. ...+.+|+.++. +.+++++|.+|++++.+-|.+++ |+. .++|+. +.
T Consensus 105 ~kV~II~~ad~m~~--------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~ 164 (290)
T PRK07276 105 QQVFIIKDADKMHV--------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHFPK-NE 164 (290)
T ss_pred cEEEEeehhhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeCCC-cH
Confidence 36888999988842 345566666664 34568899999999999999999 984 777765 44
Q ss_pred HHHHHHH
Q psy522 90 KTKRRIF 96 (131)
Q Consensus 90 ~~R~~il 96 (131)
++-.+++
T Consensus 165 ~~~~~~L 171 (290)
T PRK07276 165 AYLIQLL 171 (290)
T ss_pred HHHHHHH
Confidence 4433444
No 161
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0038 Score=49.58 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=63.7
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+.. ...+.++..++.. .+.+++|.+|+.++.+.+.+++ |+ ..+.+.+++.
T Consensus 128 ~KVvIIdEad~Lt~--------------~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~ 188 (620)
T PRK14954 128 YRVYIIDEVHMLST--------------AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPL 188 (620)
T ss_pred CEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCH
Confidence 35889999888732 2345566666643 2346666667778999999998 77 4899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++-...++..++..+.. .+..+..++..+.|
T Consensus 189 ~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 189 DEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 99888888777654433 22345666666665
No 162
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.96 E-value=0.0027 Score=47.09 Aligned_cols=78 Identities=18% Similarity=0.351 Sum_probs=53.2
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH----h--cCCC--CCCCeEEEeeCCCCC-cccccccCCCccce
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ----L--DGFD--SRGDVKVIMATNRIE-TLDPALIRPGRIDR 80 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~----~--~~~~--~~~~v~vi~ttn~~~-~id~~l~~~grf~~ 80 (131)
..+||+||++.+-.. ....+...+.. + ++.. ...++++|+|.|-.+ .+++++.. ||..
T Consensus 145 ~GiL~lDEInrL~~~-----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l 211 (350)
T CHL00081 145 RGILYVDEVNLLDDH-----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGM 211 (350)
T ss_pred CCEEEecChHhCCHH-----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCc
Confidence 378999999987432 12223333321 1 1111 123688888888544 58999999 9999
Q ss_pred EEEeCCCC-HHHHHHHHHHHh
Q psy522 81 KIEFPLPD-EKTKRRIFNIHT 100 (131)
Q Consensus 81 ~i~~~~P~-~~~R~~il~~~l 100 (131)
.+.+..|+ .+.|.+|++...
T Consensus 212 ~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 212 HAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred eeecCCCCChHHHHHHHHhhh
Confidence 99999997 699999998754
No 163
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0039 Score=43.97 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=57.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|+++|.+-. ...+.+|..++. +.+.+++|..|..++.+.+.+++ |+- .+.++.|+.
T Consensus 90 ~KViII~~ae~mt~--------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~ 150 (263)
T PRK06581 90 YKVAIIYSAELMNL--------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSIL 150 (263)
T ss_pred cEEEEEechHHhCH--------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCH
Confidence 35777788777732 345566766664 44568888888889999999999 984 789999999
Q ss_pred HHHHHHHHHHhcCCC
Q psy522 90 KTKRRIFNIHTSRMT 104 (131)
Q Consensus 90 ~~R~~il~~~l~~~~ 104 (131)
..-.+.+...+....
T Consensus 151 ~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 151 HAYNELYSQFIQPIA 165 (263)
T ss_pred HHHHHHHHHhccccc
Confidence 888888877766543
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.94 E-value=0.0049 Score=50.56 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=57.3
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC---------CCCCeEEEeeCCCCCc------
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD---------SRGDVKVIMATNRIET------ 67 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~v~vi~ttn~~~~------ 67 (131)
+..+.+..+||+|||+|..-+ ...+.++..++.-. .-.+.++|.|||....
T Consensus 605 ~~~~~~p~~VvllDeieka~~--------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~ 670 (821)
T CHL00095 605 EAVRKKPYTVVLFDEIEKAHP--------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNS 670 (821)
T ss_pred HHHHhCCCeEEEECChhhCCH--------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhc
Confidence 344556669999999998622 23444444444310 1246899999995321
Q ss_pred -------------------------------ccccccCCCccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 68 -------------------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 68 -------------------------------id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
..|.|+. |+|..+.|.+.+.++-.+|+...+..
T Consensus 671 ~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 671 GGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred cccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1245666 99999999999999999999877653
No 165
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.86 E-value=0.0039 Score=41.22 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=42.0
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
...-|++||++|.+-. ...+.++..|+. ....+++|.+|++++.|-+.+++ |+- .+.+++.
T Consensus 101 ~~~KviiI~~ad~l~~--------------~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE--------------EAQNALLKTLEE--PPENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-H--------------HHHHHHHHHHHS--TTTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCceEEEeehHhhhhH--------------HHHHHHHHHhcC--CCCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 3467999999999842 355566666664 34679999999999999999999 873 5666543
No 166
>KOG0741|consensus
Probab=96.82 E-value=0.0037 Score=48.69 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=62.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCC-CeEEEeeCCCCCccc-ccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG-DVKVIMATNRIETLD-PALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~v~vi~ttn~~~~id-~~l~~~grf 78 (131)
+|+-|.+..-+||++|++|.|..-- +-+. .....++..++-.+.....++ +.++++||+..+-+- -.+.. +|
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~v-pIGP---RfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F 663 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYV-PIGP---RFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CF 663 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhccc-ccCc---hhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hh
Confidence 5889999999999999999987433 1111 122345555666666655554 578888888766663 34556 99
Q ss_pred ceEEEeCCCCH-HHHHHHHHH
Q psy522 79 DRKIEFPLPDE-KTKRRIFNI 98 (131)
Q Consensus 79 ~~~i~~~~P~~-~~R~~il~~ 98 (131)
+..+++|..+. ++-.+++..
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred hheeecCccCchHHHHHHHHH
Confidence 99999998755 565555543
No 167
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.009 Score=43.13 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCC
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 121 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 121 (131)
++..+||+|.....+..-++. ||.....+..=+.++-.+|+...-+..... .+....++|.++.|.
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 578999999999999999999 999999999999999999999887766655 333467788888774
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0058 Score=50.34 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=54.7
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC--CC-------CCCCeEEEeeCCCCCc--------
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG--FD-------SRGDVKVIMATNRIET-------- 67 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-------~~~~v~vi~ttn~~~~-------- 67 (131)
.+.+.-+||+|||+|.+-+ .+.+.++..++. +. .-.+.++|+|||....
T Consensus 663 v~~~p~~vlllDeieka~~--------------~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~ 728 (852)
T TIGR03346 663 VRRKPYSVVLFDEVEKAHP--------------DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGG 728 (852)
T ss_pred HHcCCCcEEEEeccccCCH--------------HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhccc
Confidence 3555667999999997621 233334444432 11 1145789999997221
Q ss_pred -----------------ccccccCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 68 -----------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 68 -----------------id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
..|.|.. |+|..+.+.+++.+....|+...+.
T Consensus 729 ~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 729 DDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 2356666 9999999999999999999987764
No 169
>KOG2035|consensus
Probab=96.78 E-value=0.0075 Score=43.46 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=67.9
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHH
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
-+++|-|+|.+..+. +..+.+++... .+.+-+|..+|+...+=+.+++ |+ ..|.+|+|+.+
T Consensus 129 Kvvvi~ead~LT~dA-------Q~aLRRTMEkY---------s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~e 189 (351)
T KOG2035|consen 129 KVVVINEADELTRDA-------QHALRRTMEKY---------SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDE 189 (351)
T ss_pred EEEEEechHhhhHHH-------HHHHHHHHHHH---------hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHH
Confidence 478889999885432 22233333322 1356788899999999999998 76 46999999999
Q ss_pred HHHHHHHHHhcCCCCC-CcccHHHHHHHcCCC
Q psy522 91 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 121 (131)
Q Consensus 91 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 121 (131)
+-..++...+++.++. +..-+.++++.+.|=
T Consensus 190 eI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 190 EITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 9999999999887776 444578888887763
No 170
>PF05729 NACHT: NACHT domain
Probab=96.74 E-value=0.013 Score=37.83 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=50.8
Q ss_pred HHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC--CCCcccccccCCCccceE
Q psy522 4 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN--RIETLDPALIRPGRIDRK 81 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn--~~~~id~~l~~~grf~~~ 81 (131)
.+....+.+|+||.+|.+...... .........+..++.. ...+++-++.|++ ....+...+... ..
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~~----~~ 144 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQA----QI 144 (166)
T ss_pred HHHcCCceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCCC----cE
Confidence 345667889999999999764321 1122233344444432 1122333344433 222233333331 57
Q ss_pred EEeCCCCHHHHHHHHHHHhcC
Q psy522 82 IEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~ 102 (131)
+.++..+.+++.++++.++++
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 899999999999999999875
No 171
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.73 E-value=0.0069 Score=47.11 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=52.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh------cCCC--CCCCeEEEeeCCCCC-------------cc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL------DGFD--SRGDVKVIMATNRIE-------------TL 68 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~--~~~~v~vi~ttn~~~-------------~i 68 (131)
..+++|||+|.+-.+ ....+.+.+++- .++. -..+..||||+|-.+ .+
T Consensus 301 ~Gil~iDEi~~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 301 NGVCCIDEFDKMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred CCEEEEechhhCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 468999999987422 223333333220 1111 114688999999532 69
Q ss_pred cccccCCCccceEEEe-CCCCHHHHHHHHHHHhc
Q psy522 69 DPALIRPGRIDRKIEF-PLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 69 d~~l~~~grf~~~i~~-~~P~~~~R~~il~~~l~ 101 (131)
++++++ |||..+.+ ..|+.+...+|.++.+.
T Consensus 370 ~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 370 PAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999 99976554 78999999999998654
No 172
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.72 E-value=0.011 Score=44.51 Aligned_cols=84 Identities=19% Similarity=0.400 Sum_probs=58.7
Q ss_pred HHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH------hcCCCCC--CCeEEEeeCC-CCCcccccccC
Q psy522 4 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ------LDGFDSR--GDVKVIMATN-RIETLDPALIR 74 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~--~~v~vi~ttn-~~~~id~~l~~ 74 (131)
.|++|. .|+++||+-.|- . .+.-++...+.. .+|++-. -++++|||+| ....|-+-|+.
T Consensus 140 La~AnR-GIlYvDEvnlL~-d----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD 207 (423)
T COG1239 140 LARANR-GILYVDEVNLLD-D----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD 207 (423)
T ss_pred hhhccC-CEEEEecccccc-H----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh
Confidence 356676 899999997662 1 122333333322 2233333 3699999999 46678888888
Q ss_pred CCccceEEEeCCC-CHHHHHHHHHHHhc
Q psy522 75 PGRIDRKIEFPLP-DEKTKRRIFNIHTS 101 (131)
Q Consensus 75 ~grf~~~i~~~~P-~~~~R~~il~~~l~ 101 (131)
||...+.+..| +.++|.+|.+.-+.
T Consensus 208 --Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 208 --RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred --hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 99999999988 88999999987654
No 173
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0053 Score=45.37 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=54.6
Q ss_pred CeEEEecccccccCcCCCCC-CCchhHHHHHHHHHHHHhcCC--------CCCCCeEEEeeCC----CCCcccccccCCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGF--------DSRGDVKVIMATN----RIETLDPALIRPG 76 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--------~~~~~v~vi~ttn----~~~~id~~l~~~g 76 (131)
-.||||||+|.++.+.+..+ +.+.. .+..-+|-.+.+. -.++.+++||+-. .|..+=|.+--
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSRE---GVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG-- 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSRE---GVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG-- 325 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchh---hhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--
Confidence 46999999999987764222 21221 1222333333331 2335699998643 46677677765
Q ss_pred ccceEEEeCCCCHHHHHHHH
Q psy522 77 RIDRKIEFPLPDEKTKRRIF 96 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il 96 (131)
||.-++++...+.+....||
T Consensus 326 RfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 326 RFPIRVELDALTKEDFERIL 345 (444)
T ss_pred CCceEEEcccCCHHHHHHHH
Confidence 99999999999999988887
No 174
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.63 E-value=0.0035 Score=47.55 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=55.5
Q ss_pred CCeEEEecccccccCcCCCCC-CCchhHHHHHHHHHHHHhcCC--------CCCCCeEEEeeCC----CCCcccccccCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGF--------DSRGDVKVIMATN----RIETLDPALIRP 75 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--------~~~~~v~vi~ttn----~~~~id~~l~~~ 75 (131)
+-.||||||+|+++.+.++.+ +.+. ..+...+|..+.+- -.++.+++|++=. .|..+=|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~---eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSR---EGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCc---cchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 457999999999997753211 1111 12344455555541 2235688887533 35566677776
Q ss_pred CccceEEEeCCCCHHHHHHHH
Q psy522 76 GRIDRKIEFPLPDEKTKRRIF 96 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il 96 (131)
||...+.+.+++.+.-..||
T Consensus 325 -R~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred -ccceEEECCCCCHHHHHHHh
Confidence 99999999999999988887
No 175
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.013 Score=42.38 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=50.7
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
..-||+|||+|.+... ..+.++..+.. ......+|.+||.++.+-+-+++ |+. .+.|++|+
T Consensus 109 ~~kviiidead~mt~~--------------A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~ 169 (325)
T COG0470 109 GYKVVIIDEADKLTED--------------AANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPS 169 (325)
T ss_pred CceEEEeCcHHHHhHH--------------HHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-eeecCCch
Confidence 3578999999998542 33334444442 34578899999999999999999 884 78888877
Q ss_pred HHHHHHHHH
Q psy522 89 EKTKRRIFN 97 (131)
Q Consensus 89 ~~~R~~il~ 97 (131)
...+....+
T Consensus 170 ~~~~i~~~e 178 (325)
T COG0470 170 RLEAIAWLE 178 (325)
T ss_pred HHHHHHHhh
Confidence 776666555
No 176
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.53 E-value=0.0057 Score=46.44 Aligned_cols=83 Identities=25% Similarity=0.333 Sum_probs=54.5
Q ss_pred CCeEEEecccccccCcCCCCC-CCchhHHHHHHHHHHHHhcCC--------CCCCCeEEEeeCC----CCCcccccccCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGF--------DSRGDVKVIMATN----RIETLDPALIRP 75 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--------~~~~~v~vi~ttn----~~~~id~~l~~~ 75 (131)
+-.||||||+|+++.+..+.+ +.+.. .+...+|..+.+- -.++++++|++-. .|..+=|.|.-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~e---GVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSRE---GVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCcc---chhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 567999999999997652211 11111 2334455555541 2235688887644 35555566665
Q ss_pred CccceEEEeCCCCHHHHHHHH
Q psy522 76 GRIDRKIEFPLPDEKTKRRIF 96 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il 96 (131)
||...+.+.+++.+.-..||
T Consensus 323 -R~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERIL 342 (441)
T ss_pred -ccceEEECCCCCHHHHHHHh
Confidence 99999999999999988887
No 177
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.42 E-value=0.019 Score=41.66 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=49.6
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCC---------C-
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRP---------G- 76 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~---------g- 76 (131)
...|-||+|||+|.+-++. ...++. .+..+-..+++++|.+.+. +.+-.++... |
T Consensus 170 ~~~~iViiIDdLDR~~~~~----------i~~~l~----~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~ 234 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEE----------IVELLE----AIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGR 234 (325)
T ss_pred CCceEEEEEcchhcCCcHH----------HHHHHH----HHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHH
Confidence 3567899999999984432 222333 2222223467777777763 3332222221 0
Q ss_pred -----ccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 77 -----RIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 77 -----rf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
-|+..+.+|.|+..+...++...+..
T Consensus 235 ~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 235 EYLEKIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHHhhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 36788999999999888888777543
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.013 Score=47.52 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=59.5
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC--CCC-C------CCeEEEeeCCCCCc------
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG--FDS-R------GDVKVIMATNRIET------ 67 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~------~~v~vi~ttn~~~~------ 67 (131)
+..|++..|||+|||+|+- ++ .+++.|++-+|. +.. + .+.++|+|||.-..
T Consensus 587 EaVRr~PySViLlDEIEKA-----------Hp---dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~ 652 (786)
T COG0542 587 EAVRRKPYSVILLDEIEKA-----------HP---DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDA 652 (786)
T ss_pred HhhhcCCCeEEEechhhhc-----------CH---HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhc
Confidence 3456777899999999874 22 366666666663 111 1 24899999995321
Q ss_pred ----------------------ccccccCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 68 ----------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 68 ----------------------id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
..|+|+. |+|..|.|.+.+++.-.+|+...+.
T Consensus 653 ~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 653 DGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred cccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 2355666 9999999999999999999988764
No 179
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.33 E-value=0.016 Score=45.95 Aligned_cols=78 Identities=13% Similarity=0.289 Sum_probs=52.6
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh----c--CCCC--CCCeEEEeeCCCCC---cccccccCCCccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL----D--GFDS--RGDVKVIMATNRIE---TLDPALIRPGRID 79 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~--~~~~--~~~v~vi~ttn~~~---~id~~l~~~grf~ 79 (131)
.+||+||++.+-.. ....+.+.+..= . +... ..++.+|+|+|..+ .+++++.. ||.
T Consensus 86 GvL~lDEi~rl~~~-----------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~ 152 (589)
T TIGR02031 86 GVLYVDMANLLDDG-----------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLA 152 (589)
T ss_pred CcEeccchhhCCHH-----------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hcc
Confidence 58999999887432 223333333211 0 1111 13588999998654 78999999 999
Q ss_pred eEEEeCC-CCHHHHHHHHHHHhc
Q psy522 80 RKIEFPL-PDEKTKRRIFNIHTS 101 (131)
Q Consensus 80 ~~i~~~~-P~~~~R~~il~~~l~ 101 (131)
.++.+.. |+.++|.+|++..+.
T Consensus 153 l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 153 LHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred CeeecCCCCCHHHHHHHHHHHHH
Confidence 9888875 588889999988763
No 180
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.31 E-value=0.0046 Score=39.41 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=18.7
Q ss_pred CeEEEeeCCCCC----cccccccCCCcc
Q psy522 55 DVKVIMATNRIE----TLDPALIRPGRI 78 (131)
Q Consensus 55 ~v~vi~ttn~~~----~id~~l~~~grf 78 (131)
+..+|+|+|... .+++++++ ||
T Consensus 114 ~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 114 NFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 389999999888 89999999 87
No 181
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.022 Score=42.54 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=58.2
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC---CcccccccCCCccc-eEEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI---ETLDPALIRPGRID-RKIE 83 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~---~~id~~l~~~grf~-~~i~ 83 (131)
..+.||++||+|.|..+.+ ..+-+++..-... ..++.+|+.+|.. +.+|+.+.+ +|. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 4578899999999987652 2444444333332 4578999999975 467899998 652 4478
Q ss_pred eCCCCHHHHHHHHHHHhcC
Q psy522 84 FPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~ 102 (131)
|++=+.+|-..|++.-...
T Consensus 187 F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 187 FPPYTAEELYDILRERVEE 205 (366)
T ss_pred eCCCCHHHHHHHHHHHHHh
Confidence 8888999999999887653
No 182
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.01 Score=43.60 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=50.1
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|+++|++|.+-. ...+.++..++... ..+.+|.+|++++.+.+.+++ |+ ..+.|++|+.
T Consensus 114 ~kV~iiEp~~~Ld~--------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~ 174 (325)
T PRK08699 114 LRVILIHPAESMNL--------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSH 174 (325)
T ss_pred ceEEEEechhhCCH--------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCH
Confidence 45888899888732 23334444555432 346677799999999999999 88 4788999999
Q ss_pred HHHHHHHHH
Q psy522 90 KTKRRIFNI 98 (131)
Q Consensus 90 ~~R~~il~~ 98 (131)
++-.+.+..
T Consensus 175 ~~~~~~L~~ 183 (325)
T PRK08699 175 EEALAYLRE 183 (325)
T ss_pred HHHHHHHHh
Confidence 987777654
No 183
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.19 E-value=0.017 Score=46.11 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=51.5
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC---------C--CCCCCeEEEeeCCC-CCcccccccCCCcc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG---------F--DSRGDVKVIMATNR-IETLDPALIRPGRI 78 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~--~~~~~v~vi~ttn~-~~~id~~l~~~grf 78 (131)
.||||||++.+-.. +...++..|+. . ....++.+|+|+|- ...+.++++. ||
T Consensus 128 GiL~lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~ 191 (633)
T TIGR02442 128 GILYIDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RF 191 (633)
T ss_pred CeEEeChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hc
Confidence 58999999987422 23333333331 1 11135899999884 3468899999 99
Q ss_pred ceEEEeCCC-CHHHHHHHHHHHh
Q psy522 79 DRKIEFPLP-DEKTKRRIFNIHT 100 (131)
Q Consensus 79 ~~~i~~~~P-~~~~R~~il~~~l 100 (131)
+.++.++.| +.++|.+++++.+
T Consensus 192 ~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 192 GLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ceEEEccCCCchHHHHHHHHHHH
Confidence 999999987 5788888887654
No 184
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.19 E-value=0.019 Score=47.40 Aligned_cols=80 Identities=26% Similarity=0.373 Sum_probs=53.7
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC--CC-------CCCCeEEEeeCCCCC-----------
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG--FD-------SRGDVKVIMATNRIE----------- 66 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-------~~~~v~vi~ttn~~~----------- 66 (131)
....+||+|||+|.+-+ ...+.++..++. +. .-.+.++|.|||...
T Consensus 668 ~~p~~vLllDEieka~~--------------~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~ 733 (857)
T PRK10865 668 RRPYSVILLDEVEKAHP--------------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD 733 (857)
T ss_pred hCCCCeEEEeehhhCCH--------------HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccc
Confidence 33448999999987521 133334444432 11 113467899999731
Q ss_pred --------------cccccccCCCccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 67 --------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 67 --------------~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
.+.|+|+. |+|..+.+.+++.+.-.+|++.++..
T Consensus 734 ~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 734 YAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred hHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 23467887 99999999999999999999887754
No 185
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.92 E-value=0.0079 Score=40.79 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=41.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..++|+|||+..+++.+....... ...+ .++... ...+.-++.+|.++..||+.++. +.+.++++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~----~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKV----PEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T--------HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccc----hHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 479999999999998884321111 1222 333222 23467899999999999999998 99988888655
No 186
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.045 Score=39.83 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=49.2
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
..-|++||++|.+. ....+.++..++. ..+.+++|.+|+.++.+-+.+++ |+. .+.+.+|+
T Consensus 90 ~~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~ 150 (299)
T PRK07132 90 QKKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPD 150 (299)
T ss_pred CceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCC
Confidence 34567777766652 1244566777765 34567777777788999999998 874 79999998
Q ss_pred HHHHHHHHHH
Q psy522 89 EKTKRRIFNI 98 (131)
Q Consensus 89 ~~~R~~il~~ 98 (131)
.++-.+.+..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8886665543
No 187
>KOG2228|consensus
Probab=95.80 E-value=0.03 Score=41.43 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=51.7
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC-CCCCeEEEeeCCCCC---cccccccCCCccceE-EEe
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD-SRGDVKVIMATNRIE---TLDPALIRPGRIDRK-IEF 84 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~vi~ttn~~~---~id~~l~~~grf~~~-i~~ 84 (131)
|.|.++||+|.+++-. ++++ +.+.+|-.. .+.++.+||.|.+.+ .+...+.+ ||.++ |++
T Consensus 138 ~ViFIldEfDlf~~h~-----------rQtl--lYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m 202 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHS-----------RQTL--LYNLFDISQSARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFM 202 (408)
T ss_pred eEEEEeehhhccccch-----------hhHH--HHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeec
Confidence 5667779999987543 1222 233344322 246899999887654 45678888 99877 777
Q ss_pred CCC-CHHHHHHHHHHHh
Q psy522 85 PLP-DEKTKRRIFNIHT 100 (131)
Q Consensus 85 ~~P-~~~~R~~il~~~l 100 (131)
.+| .-++-..+++..+
T Consensus 203 ~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 203 LPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCChHHHHHHHHHHh
Confidence 765 7888888888887
No 188
>PF14516 AAA_35: AAA-like domain
Probab=95.72 E-value=0.18 Score=37.11 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=59.6
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCC--eEEEeeCCCCCcccccc-cCCCccceEEEe
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD--VKVIMATNRIETLDPAL-IRPGRIDRKIEF 84 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--v~vi~ttn~~~~id~~l-~~~grf~~~i~~ 84 (131)
.+|-||+|||+|.++... .........+..+.+.-.....-.+ .+++++|.. .+.... .+|=.+...+.+
T Consensus 126 ~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~--~~~~~~~~SPFNIg~~i~L 198 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED--YIILDINQSPFNIGQPIEL 198 (331)
T ss_pred CCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCccc--ccccCCCCCCcccccceeC
Confidence 579999999999998643 1122344455555442221111122 333333322 222222 344445678899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCC
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 121 (131)
+..+.++-..+++.+-.. .... .+..+-..|.|.
T Consensus 199 ~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgGh 232 (331)
T PF14516_consen 199 PDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGGH 232 (331)
T ss_pred CCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCCC
Confidence 988999999998877433 2222 377788888885
No 189
>KOG2028|consensus
Probab=95.59 E-value=0.075 Score=40.02 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=53.5
Q ss_pred CHHHHHh-----cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC-CC-Cccccccc
Q psy522 1 LFRVAEE-----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-RI-ETLDPALI 73 (131)
Q Consensus 1 vF~~A~~-----~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn-~~-~~id~~l~ 73 (131)
+|+.|+. ...+||||||+..+...+ ...||-. -+.+.|++||+|. +| -.+..+++
T Consensus 209 ife~aq~~~~l~krkTilFiDEiHRFNksQ--------------QD~fLP~----VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 209 IFEQAQNEKSLTKRKTILFIDEIHRFNKSQ--------------QDTFLPH----VENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHHHHhhhcceeEEEeHHhhhhhhhh--------------hhcccce----eccCceEEEecccCCCccchhHHHH
Confidence 3556654 347999999999875433 1122211 2457789998765 33 45789999
Q ss_pred CCCccceEEEeCCCCHHHHHHHHHHHh
Q psy522 74 RPGRIDRKIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 74 ~~grf~~~i~~~~P~~~~R~~il~~~l 100 (131)
+ |+- .+.+...+.+.-..|+.+..
T Consensus 271 S--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 271 S--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred h--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 9 874 67778888888888887743
No 190
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.53 E-value=0.043 Score=42.51 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=42.9
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-C-------CCCCCeEEEeeCCC-CC--cccccccCCCccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-F-------DSRGDVKVIMATNR-IE--TLDPALIRPGRID 79 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-------~~~~~v~vi~ttn~-~~--~id~~l~~~grf~ 79 (131)
.++|+||+...-+ ++.+.++..|.. . ..-+..++++|||. |+ ...+++.. ||-
T Consensus 109 ~lLfLDEI~rasp--------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFl 172 (498)
T PRK13531 109 EIVFLDEIWKAGP--------------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RML 172 (498)
T ss_pred cEEeecccccCCH--------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEE
Confidence 4899999964321 244444444421 0 11123455555563 22 12248888 998
Q ss_pred eEEEeCCCC-HHHHHHHHHHH
Q psy522 80 RKIEFPLPD-EKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~-~~~R~~il~~~ 99 (131)
..+.+++|+ .++..+|+...
T Consensus 173 iri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 173 IRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EEEECCCCCchHHHHHHHHcc
Confidence 899999996 56667777653
No 191
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.38 E-value=0.035 Score=40.38 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=64.0
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc--cccccCCCccce
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL--DPALIRPGRIDR 80 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i--d~~l~~~grf~~ 80 (131)
...+..++-+|+|||+..++.... . -.+.+..++..+.+- -+=+++.+||-.....+ |+.+.+ ||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~----~----~qr~~Ln~LK~L~Ne-L~ipiV~vGt~~A~~al~~D~QLa~--RF~- 206 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSY----R----KQREFLNALKFLGNE-LQIPIVGVGTREAYRALRTDPQLAS--RFE- 206 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccH----H----HHHHHHHHHHHHhhc-cCCCeEEeccHHHHHHhccCHHHHh--ccC-
Confidence 456788899999999999875431 1 122333333333221 11257778876655554 677878 997
Q ss_pred EEEeCC-CCHHHHHHHHHHHhcCCCCC--Ccc---c-HHHHHHHcCCCCHH
Q psy522 81 KIEFPL-PDEKTKRRIFNIHTSRMTLA--EDV---N-LQELIMAKDDLSGA 124 (131)
Q Consensus 81 ~i~~~~-P~~~~R~~il~~~l~~~~~~--~~~---~-~~~la~~t~g~s~~ 124 (131)
.+.+|. ...++...++..+-+..++. ..+ + ...+-..|+|.+|.
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 455553 23344455677765555443 112 2 34566778898764
No 192
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.07 Score=38.06 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=43.7
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
--|++|+++|.+-. ...+.+|..++. +.+++++|.+|+.++.+.+.+++ |+. .+.++.+
T Consensus 89 ~KV~II~~ae~m~~--------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLNK--------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred CEEEEeccHhhhCH--------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 35777788777632 355667777764 45678999999999999999999 974 4566665
No 193
>KOG1514|consensus
Probab=95.35 E-value=0.1 Score=41.99 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=52.9
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc----cccccCCCccc-eE
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL----DPALIRPGRID-RK 81 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i----d~~l~~~grf~-~~ 81 (131)
...|+||+|||+|.|+... ..++-.+++-. ...+.+++||+..|..+.. ...+.+ |.+ .+
T Consensus 506 ~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWp--t~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tR 570 (767)
T KOG1514|consen 506 KRSTTVVLIDELDILVTRS-----------QDVLYNIFDWP--TLKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTR 570 (767)
T ss_pred CCCCEEEEeccHHHHhccc-----------HHHHHHHhcCC--cCCCCceEEEEecccccCHHHHhccchhh--hcccee
Confidence 3468999999999998754 12333333211 1234567777777753332 223333 432 46
Q ss_pred EEeCCCCHHHHHHHHHHHhcCC
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~ 103 (131)
|.|.+=+.+|-++|+..-|++.
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcch
Confidence 7777779999999999998876
No 194
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=95.24 E-value=0.051 Score=41.69 Aligned_cols=89 Identities=10% Similarity=0.192 Sum_probs=56.9
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE--EeCCCC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI--EFPLPD 88 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i--~~~~P~ 88 (131)
-|+||||++.+|... ...+...+.++...+ .+.+|-|+..|.+|..||..++. -+..+| -+..-+
T Consensus 257 lVfFfDEAHLLF~da-------~kall~~ieqvvrLI----RSKGVGv~fvTQ~P~DiP~~VL~--QLGnrIQHaLRAfT 323 (502)
T PF05872_consen 257 LVFFFDEAHLLFNDA-------PKALLDKIEQVVRLI----RSKGVGVYFVTQNPTDIPDDVLG--QLGNRIQHALRAFT 323 (502)
T ss_pred EEEEEechhhhhcCC-------CHHHHHHHHHHHHHh----hccCceEEEEeCCCCCCCHHHHH--hhhhHHHHHHhcCC
Confidence 457799999999654 333444455555444 35578899999999999999998 555555 455556
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHH
Q psy522 89 EKTKRRIFNIHTSRMTLAEDVNLQE 113 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~~~~~~~~ 113 (131)
..+++.+-. ....+...+..|+.+
T Consensus 324 P~DqKavk~-aa~tfr~np~~d~~~ 347 (502)
T PF05872_consen 324 PKDQKAVKA-AAETFRPNPAFDTEE 347 (502)
T ss_pred HhHHHHHHH-HHHhCCCCccccHHH
Confidence 666655533 334444444455443
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.20 E-value=0.069 Score=40.05 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=42.9
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC------------CCCcccccccCCCc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN------------RIETLDPALIRPGR 77 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn------------~~~~id~~l~~~gr 77 (131)
|.|+||||++-|= ...++.+-..++. +-.++++++ || +|+-+|..|+. |
T Consensus 279 pGVLFIDEvHmLD--------------iEcFsfLnralEs--~~sPiiIlA-TNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLD--------------IECFSFLNRALES--ELSPIIILA-TNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGSB--------------HHHHHHHHHHHTS--TT--EEEEE-ES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhcc--------------HHHHHHHHHHhcC--CCCcEEEEe-cCceeeeccCccCcCCCCCCcchHh--h
Confidence 8999999997761 1233322233331 223455444 45 56678888888 7
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhcCCCCC
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA 106 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~l~~~~~~ 106 (131)
+ ..|...+-+.++-.+|++.-++...+.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 7 467777789999999999888765544
No 196
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.1 Score=35.88 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce------------EEEeCCCCHHHHHHHHHHH
Q psy522 38 RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR------------KIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~------------~i~~~~P~~~~R~~il~~~ 99 (131)
...+.+|..+.. +..++++|..|..+..+.+.+++ |+.. .+.+...+.++-.+.++..
T Consensus 69 ~A~NaLLK~LEE--Pp~~~~fiL~t~~~~~llpTI~S--Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~ 138 (206)
T PRK08485 69 EAQNALLKILEE--PPKNICFIIVAKSKNLLLPTIRS--RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKEL 138 (206)
T ss_pred HHHHHHHHHhcC--CCCCeEEEEEeCChHhCchHHHh--hheeccccccccccccccccCCCCHHHHHHHHHHH
Confidence 355667766664 44568888888889999999999 8753 5778888999988888883
No 197
>PRK09862 putative ATP-dependent protease; Provisional
Probab=94.85 E-value=0.13 Score=40.10 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=28.2
Q ss_pred CCeEEEeeCCCCC---------------------cccccccCCCccceEEEeCCCCHH
Q psy522 54 GDVKVIMATNRIE---------------------TLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 54 ~~v~vi~ttn~~~---------------------~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
.++.+|+|+|-.. .++..++. |||.++.++.|+.+
T Consensus 336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 3589999999632 46778888 99999999998755
No 198
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.80 E-value=0.062 Score=35.88 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=33.0
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCC--C-------CCCCeEEEeeCCCCCcc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF--D-------SRGDVKVIMATNRIETL 68 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-------~~~~v~vi~ttn~~~~i 68 (131)
.||||||+|+..+.. +.........+...++..+++- . ...++++|+|+|.-...
T Consensus 70 gVVllDEidKa~~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 70 GVVLLDEIDKAHPSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp TEEEEETGGGCSHTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred hhhhhHHHhhccccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 499999999987652 1222222234555666655431 1 11569999999965444
No 199
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=0.068 Score=38.77 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=42.1
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
-|++|+++|.+-. ...+.+|+.++. ..+++++|..|+.++.+.|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~mt~--------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMTL--------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcCH--------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 4777788877732 344556666664 44678889999999999999999 884 5667654
No 200
>PF12846 AAA_10: AAA-like domain
Probab=94.73 E-value=0.03 Score=39.83 Aligned_cols=72 Identities=26% Similarity=0.311 Sum_probs=53.2
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc-----ccccCCCccceE
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD-----PALIRPGRIDRK 81 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id-----~~l~~~grf~~~ 81 (131)
...|.++++||+..+.... .....+..++.... +.++.++.+|+.+..++ ++++. -+...
T Consensus 218 ~~~~~~i~iDEa~~~~~~~---------~~~~~~~~~~~~~R----k~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~ 282 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNP---------SGAEFLDELLREGR----KYGVGLILATQSPSDLPKSPIEDAILA--NCNTK 282 (304)
T ss_pred CCceEEEEeCCcccccccc---------chhhhhhHHHHHHH----hcCCEEEEeeCCHHHHhccchHHHHHH--hCCcE
Confidence 3678999999998887653 12234445554443 45678999999999999 78888 88888
Q ss_pred EEeCCCCHHHHH
Q psy522 82 IEFPLPDEKTKR 93 (131)
Q Consensus 82 i~~~~P~~~~R~ 93 (131)
+.+...+.+.+.
T Consensus 283 i~~~~~~~~~~~ 294 (304)
T PF12846_consen 283 IIFRLEDSDDAE 294 (304)
T ss_pred EEecCChHHHHH
Confidence 888888877766
No 201
>KOG1942|consensus
Probab=94.49 E-value=0.67 Score=34.14 Aligned_cols=89 Identities=24% Similarity=0.367 Sum_probs=46.8
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC-------------CCCcccccccC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-------------RIETLDPALIR 74 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn-------------~~~~id~~l~~ 74 (131)
.-|.|+||||+.-+= ...+..+-..+.+ .-.++++++ || .|+-+|+.++.
T Consensus 295 lvPGVLFIDEVhMLD--------------iEcFTyL~kalES--~iaPivifA-sNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLD--------------IECFTYLHKALES--PIAPIVIFA-SNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhhh--------------hHHHHHHHHHhcC--CCCceEEEe-cCCcceeecCCcCCCCCCCCCHHHhh
Confidence 348999999997651 1334444444432 113444443 33 35566777776
Q ss_pred CCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHH
Q psy522 75 PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIM 116 (131)
Q Consensus 75 ~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~ 116 (131)
|+--.=.++. +.++-++|++.-.+..++. .+..+..++.
T Consensus 358 --Rl~Iirt~~y-~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 358 --RLLIIRTLPY-DEEEIRQIIKIRAQVEGLQVEEEALDLLAE 397 (456)
T ss_pred --heeEEeeccC-CHHHHHHHHHHHHhhhcceecHHHHHHHHh
Confidence 6532222333 5566667777666555554 2223444544
No 202
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=94.26 E-value=0.14 Score=37.79 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=45.1
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH-hcCCCCC-------CCeEEEeeCCCCC-------------cc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ-LDGFDSR-------GDVKVIMATNRIE-------------TL 68 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-------~~v~vi~ttn~~~-------------~i 68 (131)
..|++|||+|.+-.. ....+.+.+++ .-.+... -+.-|+|++|-.. .+
T Consensus 122 ~GiccIDe~dk~~~~-----------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l 190 (331)
T PF00493_consen 122 GGICCIDEFDKMKED-----------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINL 190 (331)
T ss_dssp TSEEEECTTTT--CH-----------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S
T ss_pred Cceeeecccccccch-----------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhccc
Confidence 379999999997432 12333333332 1112221 2478999998655 48
Q ss_pred cccccCCCccceEEEe-CCCCHHHHHHHHHHHhcCC
Q psy522 69 DPALIRPGRIDRKIEF-PLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 69 d~~l~~~grf~~~i~~-~~P~~~~R~~il~~~l~~~ 103 (131)
++.+++ |||..+.+ ..|+.+.=..+.++.+...
T Consensus 191 ~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 191 PPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp -CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred chhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 899999 99977665 5778877777888777654
No 203
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.11 Score=38.44 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=18.8
Q ss_pred HHHhcCCeEEEecccccccCcCCCCC
Q psy522 4 VAEEHAPSIVFIDEIDAVGTKRYDSN 29 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l~~~~~~~~ 29 (131)
.+++.. .||+|||+|.+.++..+++
T Consensus 158 V~rAer-GIIyIDEIDKIarkSeN~S 182 (408)
T COG1219 158 VERAER-GIIYIDEIDKIARKSENPS 182 (408)
T ss_pred HHHHhC-CeEEEechhhhhccCCCCC
Confidence 344444 8999999999998876553
No 204
>KOG0990|consensus
Probab=93.99 E-value=0.17 Score=37.20 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+-.+++||+|++..+. ++.+++++ ..+ +.++.+..-+|++..+.|++.+ ||. .+.+.+.+
T Consensus 131 ~fKlvILDEADaMT~~A-------QnALRRvi-------ek~--t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~ 191 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDA-------QNALRRVI-------EKY--TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLT 191 (360)
T ss_pred ceeEEEecchhHhhHHH-------HHHHHHHH-------HHh--ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCC
Confidence 57789999999986543 22222222 211 2344555778999999999999 986 55666667
Q ss_pred HHHHHHHHHHHhcC
Q psy522 89 EKTKRRIFNIHTSR 102 (131)
Q Consensus 89 ~~~R~~il~~~l~~ 102 (131)
.++-...+.+.+..
T Consensus 192 ~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 192 MAQQTERQSHIRES 205 (360)
T ss_pred hhhhhhHHHHHHhc
Confidence 66666666666543
No 205
>KOG1968|consensus
Probab=93.90 E-value=0.34 Score=40.27 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=62.9
Q ss_pred EEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHH
Q psy522 12 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 91 (131)
Q Consensus 12 ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~ 91 (131)
||++||+|.++. . .......+..+.. ...+-+|.+||....-...-.. +-...++|+.|+.+.
T Consensus 431 vil~devD~~~~-~-------dRg~v~~l~~l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~ 493 (871)
T KOG1968|consen 431 LILMDEVDGMFG-E-------DRGGVSKLSSLCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSEL 493 (871)
T ss_pred EEEEeccccccc-h-------hhhhHHHHHHHHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHH
Confidence 899999999986 2 1112223333332 2234588888887766654444 433569999999999
Q ss_pred HHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 92 KRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 92 R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
...-+..++....+. ..-.+.++.+.+ ++||.+.
T Consensus 494 i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~ 528 (871)
T KOG1968|consen 494 IRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQI 528 (871)
T ss_pred HHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHH
Confidence 988888887765544 334577777775 5666554
No 206
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.61 E-value=1.2 Score=31.79 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=68.2
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-ccc---ccccCCCccceE
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-TLD---PALIRPGRIDRK 81 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-~id---~~l~~~grf~~~ 81 (131)
+...|-++++||++.+.... ...+.-+.+.-.+...--+++.+|-...-. --- ..+.. |++-.
T Consensus 128 ~g~r~v~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir 194 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIR 194 (269)
T ss_pred hCCCCeEEeehhHhhhChhH-----------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEE
Confidence 34557899999999885432 223333333333222223477777643211 111 23334 78877
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRMTLA----EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~~~~----~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
+.+++-+.++-..++++.++..+.. .+..+..+...+.|| |.-|..+|
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~ 246 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLA 246 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHH
Confidence 8889999999999999998766443 334477788888885 66565554
No 207
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.94 E-value=1.8 Score=32.69 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=50.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC-----------CCCcccccccCCCcc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-----------RIETLDPALIRPGRI 78 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn-----------~~~~id~~l~~~grf 78 (131)
|.||||||+.-|= ...+..+-..+.+ .-.+++++||.. +|+-||..++. |.
T Consensus 292 pGVLFIDEvHmLD--------------IE~FsFlnrAlEs--e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl 353 (450)
T COG1224 292 PGVLFIDEVHMLD--------------IECFSFLNRALES--ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL 353 (450)
T ss_pred cceEEEechhhhh--------------HHHHHHHHHHhhc--ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he
Confidence 8999999997651 1222222222221 113455554432 35667777776 65
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHH
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA 117 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~ 117 (131)
..|...+=++++-++|++.-.+...+. .+..+..|+..
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~i 392 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDI 392 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhh
Confidence 244444558999999998877655544 22234445443
No 208
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.88 E-value=0.41 Score=38.29 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=31.7
Q ss_pred CeEEEeeCCC--CCcccccccCCCccc---eEEEeCC--C-CHHHHHHHHHHHh
Q psy522 55 DVKVIMATNR--IETLDPALIRPGRID---RKIEFPL--P-DEKTKRRIFNIHT 100 (131)
Q Consensus 55 ~v~vi~ttn~--~~~id~~l~~~grf~---~~i~~~~--P-~~~~R~~il~~~l 100 (131)
.+.+|+++|. ...+++.+++ ||+ ..+.++. | +.+.|..+.+...
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~ 319 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVA 319 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHH
Confidence 5788898885 3678999999 999 6666653 3 6777766655543
No 209
>PRK14700 recombination factor protein RarA; Provisional
Probab=92.86 E-value=0.46 Score=34.61 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=40.1
Q ss_pred CCCCeEEEeeCC-C-CCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 52 SRGDVKVIMATN-R-IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 52 ~~~~v~vi~ttn-~-~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
+.+.+++||+|. + --.+.+++++ |+ +.+.+.+++.++-..+++..+..
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~ 54 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQ 54 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHh
Confidence 457788998775 4 4568999999 98 58999999999999999998864
No 210
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.69 E-value=0.86 Score=32.33 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=52.3
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCC
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~ 86 (131)
...+++|+||+++... .+..+...+.. ...+.-+|.||.... +-..... -...+.++.
T Consensus 99 ~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~~kilvTTR~~~-v~~~~~~---~~~~~~l~~ 156 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE----------------DLEELREPLPS--FSSGSKILVTTRDRS-VAGSLGG---TDKVIELEP 156 (287)
T ss_dssp CCTSEEEEEEEE-SHH----------------HH-------HC--HHSS-EEEEEESCGG-GGTTHHS---CEEEEECSS
T ss_pred ccccceeeeeeecccc----------------ccccccccccc--ccccccccccccccc-ccccccc---ccccccccc
Confidence 3448999999986542 11112111111 122455677777642 2222221 157899999
Q ss_pred CCHHHHHHHHHHHhcCCC----CCCcccHHHHHHHcCCCCHHHHH
Q psy522 87 PDEKTKRRIFNIHTSRMT----LAEDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~~----~~~~~~~~~la~~t~g~s~~di~ 127 (131)
.+.++..+++........ ...+.....+++.+.|+ |--|.
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~ 200 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALK 200 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 999999999999865443 11222367788888876 43333
No 211
>KOG2227|consensus
Probab=92.58 E-value=0.33 Score=37.56 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=68.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccC----CCccceEEEe
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR----PGRIDRKIEF 84 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~----~grf~~~i~~ 84 (131)
.|-++++||.|.|..... .++.++ -++.. ....++++||-+|..+.=|..+-| -+.-...+.|
T Consensus 256 ~~~llVlDEmD~L~tr~~-----------~vLy~l-Fewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F 322 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQ-----------TVLYTL-FEWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVF 322 (529)
T ss_pred ceEEEEechhhHHhhccc-----------ceeeee-hhccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeee
Confidence 377899999999984331 122222 12222 234679999999988776654432 1233567888
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCccc--HHHHHHHcCCCCH
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLAEDVN--LQELIMAKDDLSG 123 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~~~~~--~~~la~~t~g~s~ 123 (131)
++=+.++-.+|+..-+.........+ +.-.|....|.||
T Consensus 323 ~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 323 PPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred cCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 88899999999999988776554333 5556777777765
No 212
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=92.38 E-value=0.53 Score=36.80 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=42.5
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc----C----CCCCCCeEEEeeCCCC-----C----------
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD----G----FDSRGDVKVIMATNRI-----E---------- 66 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~----~----~~~~~~v~vi~ttn~~-----~---------- 66 (131)
..+|||||++.+-. .....+.+.++.-. . ..-..++.+|+++|-- .
T Consensus 296 ~GvLfLDEi~e~~~-----------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~ 364 (499)
T TIGR00368 296 NGVLFLDELPEFKR-----------SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSP 364 (499)
T ss_pred CCeEecCChhhCCH-----------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCH
Confidence 37999999987632 12334444432210 0 0011368899999842 1
Q ss_pred --------cccccccCCCccceEEEeCCCCHH
Q psy522 67 --------TLDPALIRPGRIDRKIEFPLPDEK 90 (131)
Q Consensus 67 --------~id~~l~~~grf~~~i~~~~P~~~ 90 (131)
.+...++. |||..+.++.++.+
T Consensus 365 ~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 365 QQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 47788888 99999999977544
No 213
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=92.28 E-value=0.79 Score=38.32 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=48.2
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc------CCCC--CCCeEEEeeCCCCC-------------ccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMATNRIE-------------TLD 69 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~--~~~v~vi~ttn~~~-------------~id 69 (131)
.+++|||+|.+-.. ....+.+.+++-. ++.. ..++.||||+|-.+ .++
T Consensus 559 GtL~IDEidkms~~-----------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp 627 (915)
T PTZ00111 559 GVCCIDELDKCHNE-----------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINIS 627 (915)
T ss_pred CeEEecchhhCCHH-----------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCC
Confidence 58899999987322 2233444442211 1111 14689999999632 367
Q ss_pred ccccCCCccceEE-EeCCCCHHHHHHHHHHHhc
Q psy522 70 PALIRPGRIDRKI-EFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 70 ~~l~~~grf~~~i-~~~~P~~~~R~~il~~~l~ 101 (131)
+.+++ |||... .+..|+.+.=..|-.+.++
T Consensus 628 ~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 628 PSLFT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hHHhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 99999 998664 4567787776666666553
No 214
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.62 E-value=0.53 Score=33.79 Aligned_cols=86 Identities=17% Similarity=0.371 Sum_probs=48.9
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-------CCCeEEEeeCCCC---CcccccccCCCc
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-------RGDVKVIMATNRI---ETLDPALIRPGR 77 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~v~vi~ttn~~---~~id~~l~~~gr 77 (131)
.+..|+|+||+..-..+. .......+.+.++++.=.-+.. -.++-++|+++-+ ..+++.+.| .
T Consensus 99 ~k~lv~fiDDlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 99 GKKLVLFIDDLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp SSEEEEEEETTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred CcEEEEEecccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 456899999986654332 2222234566666543211111 1358888988742 247888888 7
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhc
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
| ..+.++.|+.+.-..|+..++.
T Consensus 172 f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 172 F-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp E-EEEE----TCCHHHHHHHHHHH
T ss_pred e-EEEEecCCChHHHHHHHHHHHh
Confidence 7 4899999999988888877664
No 215
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.14 E-value=2.7 Score=34.01 Aligned_cols=79 Identities=14% Similarity=0.296 Sum_probs=44.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHH-HhcCCCCCCCeEEEeeCC-CCC--------c------ccccc
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLN-QLDGFDSRGDVKVIMATN-RIE--------T------LDPAL 72 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~v~vi~ttn-~~~--------~------id~~l 72 (131)
...||||||+|.++... . ..+..++. ... ..+.+.+|++++ .+. . +.+++
T Consensus 195 ~~~IILIDEiPn~~~r~-------~----~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eL 260 (637)
T TIGR00602 195 DKKIILVEDLPNQFYRD-------T----RALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEI 260 (637)
T ss_pred ceeEEEeecchhhchhh-------H----HHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhH
Confidence 56799999999887432 1 12222322 111 233334444333 222 0 22566
Q ss_pred cCCCccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 73 IRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 73 ~~~grf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
++.-|. ..|.|++.+...-.+.|+..+..
T Consensus 261 ls~~rv-~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 261 LEEPRV-SNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred hcccce-eEEEeCCCCHHHHHHHHHHHHHh
Confidence 642233 37899999999988878777764
No 216
>KOG2170|consensus
Probab=91.01 E-value=1.7 Score=31.95 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=35.2
Q ss_pred cccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCCCccc-HHHHHHHcCCC
Q psy522 71 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN-LQELIMAKDDL 121 (131)
Q Consensus 71 ~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~-~~~la~~t~g~ 121 (131)
.+...++.|+.|.+.+.++..-...++..+.+.+...+.+ +.++++...-|
T Consensus 271 ~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~erva~~l~ff 322 (344)
T KOG2170|consen 271 RLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVERVANSLSFF 322 (344)
T ss_pred ccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHHHHHHhhccc
Confidence 3344445677788888888888888888888777665555 55666655433
No 217
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=90.88 E-value=0.24 Score=33.70 Aligned_cols=45 Identities=36% Similarity=0.489 Sum_probs=26.8
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
++++|||.|.-+... ....+..++.... . .++=||.||.+|.-||
T Consensus 259 ~illiDEpE~~LHp~----------~q~~l~~~l~~~~---~-~~~QviitTHSp~ild 303 (303)
T PF13304_consen 259 SILLIDEPENHLHPS----------WQRKLIELLKELS---K-KNIQVIITTHSPFILD 303 (303)
T ss_dssp SEEEEESSSTTSSHH----------HHHHHHHHHHHTG---G-GSSEEEEEES-GGG--
T ss_pred eEEEecCCcCCCCHH----------HHHHHHHHHHhhC---c-cCCEEEEeCccchhcC
Confidence 899999999876432 3333334443333 2 3455899999887654
No 218
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=90.78 E-value=0.55 Score=37.42 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=43.5
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC---------CCC--CCCeEEEeeCCCC---CcccccccCCC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG---------FDS--RGDVKVIMATNRI---ETLDPALIRPG 76 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~--~~~v~vi~ttn~~---~~id~~l~~~g 76 (131)
.|||+||+..+-. .++..+++-|+. ... ..++++|+|-|-. ..+++.++.
T Consensus 95 GvL~lDe~n~~~~--------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD-- 158 (584)
T PRK13406 95 GVLVLAMAERLEP--------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD-- 158 (584)
T ss_pred CEEEecCcccCCH--------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--
Confidence 7999999977632 244455554442 111 1358888874322 348899999
Q ss_pred ccceEEEeCCCCHHH
Q psy522 77 RIDRKIEFPLPDEKT 91 (131)
Q Consensus 77 rf~~~i~~~~P~~~~ 91 (131)
||+.++.++.|+..+
T Consensus 159 Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 159 RLAFHLDLDGLALRD 173 (584)
T ss_pred heEEEEEcCCCChHH
Confidence 999999999987654
No 219
>KOG0745|consensus
Probab=90.42 E-value=0.67 Score=35.78 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=15.2
Q ss_pred HHhcCCeEEEecccccccCcC
Q psy522 5 AEEHAPSIVFIDEIDAVGTKR 25 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~ 25 (131)
+++.+ .||||||+|.+..+.
T Consensus 288 ekAQq-GIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 288 EKAQQ-GIVFLDEVDKITKKA 307 (564)
T ss_pred HHHhc-CeEEEehhhhhcccC
Confidence 34444 899999999998544
No 220
>KOG2383|consensus
Probab=90.35 E-value=0.089 Score=39.83 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCCeEEEeeCCC-CCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHH
Q psy522 53 RGDVKVIMATNR-IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQ 112 (131)
Q Consensus 53 ~~~v~vi~ttn~-~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~ 112 (131)
+++|+++||+|+ |+.+-..=+. +...+| ...+|++.+.-..+...+|+.
T Consensus 222 ~~GvVlvATSNR~P~dLYknGlQ-----R~~F~P------fI~~L~~rc~vi~ldS~vDYR 271 (467)
T KOG2383|consen 222 KNGVVLVATSNRAPEDLYKNGLQ-----RENFIP------FIALLEERCKVIQLDSGVDYR 271 (467)
T ss_pred hCCeEEEEeCCCChHHHhhcchh-----hhhhhh------HHHHHHHhheEEecCCccchh
Confidence 348999999995 7777544333 233333 235667766666666667776
No 221
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=90.26 E-value=0.79 Score=31.36 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=26.2
Q ss_pred CeEEEeeCCCCCcc-cccccCCCccceEEEeCC------CC----HHHHHHHHHHH
Q psy522 55 DVKVIMATNRIETL-DPALIRPGRIDRKIEFPL------PD----EKTKRRIFNIH 99 (131)
Q Consensus 55 ~v~vi~ttn~~~~i-d~~l~~~grf~~~i~~~~------P~----~~~R~~il~~~ 99 (131)
..++|||||..+-+ |+.=-| || ..|.+.. |. .+.|.++|...
T Consensus 140 ~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~~i~~~~~~~~~~~~~~~qlwAeA 192 (198)
T PF05272_consen 140 RAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSKRIDIKSIDIDLLEEDRDQLWAEA 192 (198)
T ss_pred eEEEEeccCCcceeeCCCCCe--EE-EEEEEcCcccccccchhhhHHHHHHHHHHH
Confidence 47899999998866 555666 77 3444443 22 23466666544
No 222
>PHA00012 I assembly protein
Probab=90.23 E-value=0.68 Score=34.39 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 74 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~ 74 (131)
.-+++++||+-..++.|+..+.... ...+++... ...+.-+|..|.++..+|+.++.
T Consensus 81 ~gsLlVlDEaq~~fp~R~~~sk~p~-----~vie~l~~h----Rh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 81 KNGLLVLDECGTWFNSRSWNDKERQ-----PVIDWFLHA----RKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCcEEEEECcccccCCCCcCcCCcH-----HHHHHHHHh----ccCCceEEEEcCCHHHHhHHHHH
Confidence 4579999999999998854432221 223333332 34567799999999999999974
No 223
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=88.48 E-value=0.11 Score=33.28 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=13.6
Q ss_pred CCeEEEeeCCCCC-----cccccccCCCcc
Q psy522 54 GDVKVIMATNRIE-----TLDPALIRPGRI 78 (131)
Q Consensus 54 ~~v~vi~ttn~~~-----~id~~l~~~grf 78 (131)
++.+||||-|..+ .++++++. ||
T Consensus 102 ~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 102 DPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4689999999766 57888887 77
No 224
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=87.62 E-value=8.8 Score=33.24 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=52.0
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCC
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~ 86 (131)
..++.+|++|++|.. .++..+....+.. .++..||.||.+.+.+ +....++.+.++.
T Consensus 294 ~~krvLLVLDdv~~~----------------~~l~~L~~~~~~~--~~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~ 350 (1153)
T PLN03210 294 KHRKVLIFIDDLDDQ----------------DVLDALAGQTQWF--GSGSRIIVITKDKHFL-----RAHGIDHIYEVCL 350 (1153)
T ss_pred hCCeEEEEEeCCCCH----------------HHHHHHHhhCccC--CCCcEEEEEeCcHHHH-----HhcCCCeEEEecC
Confidence 356789999998642 1222222222211 2233455566654333 2235678899999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCccc----HHHHHHHcCCCC
Q psy522 87 PDEKTKRRIFNIHTSRMTLAEDVN----LQELIMAKDDLS 122 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~~~~~~~~----~~~la~~t~g~s 122 (131)
|+.++..+++..+.-+....+ .+ -.++++.+.|+.
T Consensus 351 l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 351 PSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAGNLP 389 (1153)
T ss_pred CCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhCCCc
Confidence 999999999987653322221 12 334566677754
No 225
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=87.59 E-value=9 Score=27.92 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=47.6
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc---c---cccccCCCccceEEE
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---L---DPALIRPGRIDRKIE 83 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~---i---d~~l~~~grf~~~i~ 83 (131)
.-+|++++++.+-.+. ....+..+...+ +....+.++++..++..+. + -..+.. + ...+.
T Consensus 77 ~klvii~~~~~l~~~~----------~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~--~-~~~~~ 142 (340)
T PRK05574 77 RKLVELRLPEFLTGAK----------GEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKK--K-AVVVE 142 (340)
T ss_pred CeEEEEECCCCCCchh----------HHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHh--C-ceEEE
Confidence 4567777777653221 223444555545 3333334555555553222 1 123322 2 35778
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA 106 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~ 106 (131)
++.|+..+...+++..++..+..
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~g~~ 165 (340)
T PRK05574 143 AQPPKEAELPQWIQQRLKQQGLQ 165 (340)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC
Confidence 88999999999999998877654
No 226
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.46 E-value=0.84 Score=28.24 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHhcCCeEEEeccccccc
Q psy522 4 VAEEHAPSIVFIDEIDAVG 22 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l~ 22 (131)
..+.+...+|+|||+|.+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHCTEEEEEEETTHHHH
T ss_pred HHHhcCCeEEEEeChHhcC
Confidence 3455555699999999975
No 227
>KOG1051|consensus
Probab=87.40 E-value=1.6 Score=36.54 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCC--CC-C------CCeEEEeeCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF--DS-R------GDVKVIMATNR 64 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~------~~v~vi~ttn~ 64 (131)
.+..+++.-+||||||+|.- +. ..++.++..+|.- .. + .+++||+|+|.
T Consensus 653 teavrrrP~sVVLfdeIEkA-----------h~---~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 653 TEAVKRRPYSVVLFEEIEKA-----------HP---DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHHHhcCCceEEEEechhhc-----------CH---HHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 45667888899999999873 12 2444444444431 11 1 35999999886
No 228
>PRK08116 hypothetical protein; Validated
Probab=87.28 E-value=1.3 Score=31.68 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=34.8
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC-CCcc----cccccCCCcc---ce
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR-IETL----DPALIRPGRI---DR 80 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~-~~~i----d~~l~~~grf---~~ 80 (131)
...+|+|||+...-. .......+..+ ++..... +..+|.|||. ++.+ +..+.+ |+ ..
T Consensus 178 ~~dlLviDDlg~e~~---------t~~~~~~l~~i---in~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~ 242 (268)
T PRK08116 178 NADLLILDDLGAERD---------TEWAREKVYNI---IDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCT 242 (268)
T ss_pred CCCEEEEecccCCCC---------CHHHHHHHHHH---HHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCE
Confidence 456999999854211 11112223333 3332222 2346667774 5554 556666 64 33
Q ss_pred EEEeCCCCHHHHHHHH
Q psy522 81 KIEFPLPDEKTKRRIF 96 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il 96 (131)
.|.++-|+. |..+.
T Consensus 243 ~v~~~g~d~--R~~~~ 256 (268)
T PRK08116 243 PVENEGKSY--RKEIA 256 (268)
T ss_pred EEEeeCcCh--hHHHH
Confidence 466666653 44443
No 229
>KOG1051|consensus
Probab=87.27 E-value=1.5 Score=36.73 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=53.8
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc-----ccccccCCCccceE
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET-----LDPALIRPGRIDRK 81 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~-----id~~l~~~grf~~~ 81 (131)
.....|||+||+..+.....+ .........+...+ ..+.+.+||||..-+. =||++-+ ||+ .
T Consensus 278 ~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L-------~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l 344 (898)
T KOG1051|consen 278 GGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLL-------ARGGLWCIGATTLETYRKCIEKDPALER--RWQ-L 344 (898)
T ss_pred CCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHH-------hcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-e
Confidence 345688999999999877643 11111122222222 3345999998874333 3899999 997 6
Q ss_pred EEeCCCCHHHHHHHHHHHhcC
Q psy522 82 IEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~ 102 (131)
+.++.|+.+.-..+++..-..
T Consensus 345 ~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 345 VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred eEeccCcccchhhhhhhhhhh
Confidence 788999988766666655433
No 230
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=87.21 E-value=1.4 Score=32.60 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=39.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc--CC---C-CCCCeEEEeeCCCC-------CcccccccCCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GF---D-SRGDVKVIMATNRI-------ETLDPALIRPG 76 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~---~-~~~~v~vi~ttn~~-------~~id~~l~~~g 76 (131)
...|||||+|.+-.. ....+..+++.-. .+ . ....+.+|++|+.. ..+.+.+..
T Consensus 94 gGtL~Ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~-- 160 (329)
T TIGR02974 94 GGTLFLDELATASLL-----------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD-- 160 (329)
T ss_pred CCEEEeCChHhCCHH-----------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--
Confidence 578999999998432 2233333332211 00 0 11347888888742 123344444
Q ss_pred cc-ceEEEeCCCC--HHHHHHHHHHHhc
Q psy522 77 RI-DRKIEFPLPD--EKTKRRIFNIHTS 101 (131)
Q Consensus 77 rf-~~~i~~~~P~--~~~R~~il~~~l~ 101 (131)
|+ ...|.+|+.. .+....++++++.
T Consensus 161 rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 55 2345555543 3444555566553
No 231
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.46 E-value=1.3 Score=30.14 Aligned_cols=65 Identities=18% Similarity=0.056 Sum_probs=38.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 82 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i 82 (131)
.+|-...|.++++||--.=+ .......+..++..+. .+ +..+|.+|.+.+.++. ++.+
T Consensus 139 a~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~--------~~~~ 196 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAAL----------DAAAVALFAELIRAHL---AQ-GGIVIAATHIPLGLPG--------AREL 196 (207)
T ss_pred HHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCchhhcc--------CcEE
Confidence 45666789999999964322 2223344445554442 22 3457777787777764 3456
Q ss_pred EeCCCCH
Q psy522 83 EFPLPDE 89 (131)
Q Consensus 83 ~~~~P~~ 89 (131)
.+..|+.
T Consensus 197 ~~~~~~~ 203 (207)
T PRK13539 197 DLGPFAA 203 (207)
T ss_pred eecCccC
Confidence 6665543
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.11 E-value=2.3 Score=26.90 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=32.0
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
..+....|.+++|||+..+..................+..+..... +.++.+|.+++...
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 4566778999999999988754311001112223344444444443 23455555555443
No 233
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=85.98 E-value=3.2 Score=29.10 Aligned_cols=63 Identities=29% Similarity=0.389 Sum_probs=33.3
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 82 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i 82 (131)
.+|-.+.|.+|+.||= ...-+......+..++..+. ...+..+|..|.+++. -. ++|+.|
T Consensus 154 ARAL~~~P~iilADEP----------TgnLD~~t~~~V~~ll~~~~---~~~g~tii~VTHd~~l-----A~--~~dr~i 213 (226)
T COG1136 154 ARALINNPKIILADEP----------TGNLDSKTAKEVLELLRELN---KERGKTIIMVTHDPEL-----AK--YADRVI 213 (226)
T ss_pred HHHHhcCCCeEEeeCc----------cccCChHHHHHHHHHHHHHH---HhcCCEEEEEcCCHHH-----HH--hCCEEE
Confidence 5677789999999982 11122222233334444332 3334455566665433 33 566666
Q ss_pred EeC
Q psy522 83 EFP 85 (131)
Q Consensus 83 ~~~ 85 (131)
++.
T Consensus 214 ~l~ 216 (226)
T COG1136 214 ELK 216 (226)
T ss_pred EEe
Confidence 653
No 234
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=85.86 E-value=2.7 Score=30.33 Aligned_cols=111 Identities=13% Similarity=0.025 Sum_probs=59.1
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC-CCeEEEeeCCC-CCcccc--------cccCCC
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNR-IETLDP--------ALIRPG 76 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~v~vi~ttn~-~~~id~--------~l~~~g 76 (131)
..+|.||+|||-|..+.+.-..+ .........+..++..+..-... ..+++-|.+.- ..++-+ ++..
T Consensus 141 ~~~kvvlLIDEYD~p~~~~~~~~-e~~~~~~~~lr~ff~~~k~~~~~l~~~~iTGi~~i~k~si~S~lNn~~~~s~~~-- 217 (284)
T PF09820_consen 141 YGKKVVLLIDEYDKPINDALSNG-EYYEEMREFLRNFFSVLKKDNPYLRFAFITGILPISKESIFSGLNNLEDISLDP-- 217 (284)
T ss_pred hCCceEEEecCccHHHHHHhhhh-HHHHHHHHHHHHHHHHhcccchhhhhhheeccchhhhccCccccCCceecccch--
Confidence 35689999999999886652222 12223334444444443321111 12333332221 111111 1222
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcCCCC--CCcccHHHHHHHcCCCCH
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHTSRMTL--AEDVNLQELIMAKDDLSG 123 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l~~~~~--~~~~~~~~la~~t~g~s~ 123 (131)
+|+..+ --+++|-.++++.++..... +.+..+..+-....||.-
T Consensus 218 ~f~~~~---GFT~~Ev~~ll~~~~~~~~~~~~~~~~~~~lk~wYdGY~F 263 (284)
T PF09820_consen 218 RFSEYF---GFTEEEVETLLKYYIENLAEEQDREELLEELKEWYDGYHF 263 (284)
T ss_pred hHhhhc---CcCHHHHHHHHHHHHHHhhhccchHHHHHHHHHHcCCccc
Confidence 444222 23888999999999766544 345567778788888864
No 235
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=85.68 E-value=1.5 Score=35.62 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=45.6
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHH-HHhcCCCCC-------CCeEEEeeCCCCC-------------cc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELL-NQLDGFDSR-------GDVKVIMATNRIE-------------TL 68 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~-------~~v~vi~ttn~~~-------------~i 68 (131)
+.|..|||+|.+-..- ...+++.+ ++.-++.+. .+.-|+|++|-.. .+
T Consensus 384 ~Gv~cIDEfdKm~~~d-----------r~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l 452 (682)
T COG1241 384 GGVCCIDEFDKMNEED-----------RVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINL 452 (682)
T ss_pred CCEEEEEeccCCChHH-----------HHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCC
Confidence 6789999999873211 12222222 111122221 2466788888555 37
Q ss_pred cccccCCCccceEEEeC-CCCHHHHHHHHHHHhc
Q psy522 69 DPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTS 101 (131)
Q Consensus 69 d~~l~~~grf~~~i~~~-~P~~~~R~~il~~~l~ 101 (131)
++.+++ |||..+.+. -|+.+.=..+..+.+.
T Consensus 453 ~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 453 PAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred ChhHHh--hCCeeEEecCCCCccchHHHHHHHHH
Confidence 889999 999766654 4666655555555443
No 236
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.64 E-value=0.78 Score=31.14 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.++.|.+|+||-+..++...... ... ...+.+..++..+..+..+.++.++.|+......+
T Consensus 93 ~~~~~~~lvVIDSis~l~~~~~~~--~~~-~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~ 154 (209)
T TIGR02237 93 IDRDSASLVVVDSFTALYRLELSD--DRI-SRNRELARQLTLLLSLARKKNLAVVITNQVYTDVN 154 (209)
T ss_pred HhhcCccEEEEeCcHHHhHHHhCC--ccH-HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecC
Confidence 455689999999999987532111 111 11122333333344444456777887766444443
No 237
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=85.34 E-value=2.8 Score=30.39 Aligned_cols=56 Identities=30% Similarity=0.533 Sum_probs=35.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP 70 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~ 70 (131)
+..|-.+.|.++++||= ..+-++.....+..++..+. ..++..|+.||..++.+..
T Consensus 147 ia~aL~~~P~lliLDEP----------t~GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 147 IALALLHDPELLILDEP----------TSGLDPESRREIWELLRELA---KEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHhcCCCEEEECCC----------CcCCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcHHHHHH
Confidence 34567788999999993 23334444455555554443 4555788888888777643
No 238
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=84.76 E-value=3.9 Score=32.86 Aligned_cols=13 Identities=8% Similarity=0.501 Sum_probs=10.5
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
...|||||+|.+-
T Consensus 417 ~GtL~ldei~~l~ 429 (638)
T PRK11388 417 GGTLFLEKVEYLS 429 (638)
T ss_pred CCEEEEcChhhCC
Confidence 4679999999874
No 239
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=84.58 E-value=4.3 Score=30.77 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.0
Q ss_pred CCeEEEecccccccC
Q psy522 9 APSIVFIDEIDAVGT 23 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~ 23 (131)
....|||||+|.+-.
T Consensus 233 ~~gtl~ldei~~l~~ 247 (441)
T PRK10365 233 DGGTLFLDEIGDISP 247 (441)
T ss_pred CCCEEEEeccccCCH
Confidence 357899999999853
No 240
>KOG1969|consensus
Probab=84.49 E-value=13 Score=30.84 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=41.0
Q ss_pred eEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHHcC
Q psy522 56 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQELIMAKD 119 (131)
Q Consensus 56 v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~-~~~~~la~~t~ 119 (131)
.-+|+.||+ .--|+++.=--|-..++|.+|....-.+=|+..+...+...+ ..+..|++.|+
T Consensus 439 RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~ 501 (877)
T KOG1969|consen 439 RPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQ 501 (877)
T ss_pred CCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc
Confidence 457888885 445777632358889999999888777777777766655432 23555555544
No 241
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=83.87 E-value=5.1 Score=29.50 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=39.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-------CCCeEEEeeCCCC-------CcccccccCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-------RGDVKVIMATNRI-------ETLDPALIRP 75 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~v~vi~ttn~~-------~~id~~l~~~ 75 (131)
...|||||+|.+-.. ....+..+++.-. +.. ...+.+|+||+.. ..+.+.+..
T Consensus 101 gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~-~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~- 167 (326)
T PRK11608 101 GGTLFLDELATAPML-----------VQEKLLRVIEYGE-LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD- 167 (326)
T ss_pred CCeEEeCChhhCCHH-----------HHHHHHHHHhcCc-EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH-
Confidence 467999999998432 2223333332211 111 1247788887742 234455555
Q ss_pred Ccc-ceEEEeCCCC--HHHHHHHHHHHh
Q psy522 76 GRI-DRKIEFPLPD--EKTKRRIFNIHT 100 (131)
Q Consensus 76 grf-~~~i~~~~P~--~~~R~~il~~~l 100 (131)
|| ...|.+|+.. .+....++++++
T Consensus 168 -~l~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 168 -RLAFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred -hcCCCEEECCChhhhhhhHHHHHHHHH
Confidence 66 3456665541 234455666665
No 242
>PF13173 AAA_14: AAA domain
Probab=83.81 E-value=2.6 Score=26.33 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=32.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc--cccccCCCccceEEEeCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL--DPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i--d~~l~~~grf~~~i~~~~ 86 (131)
.+.+|||||+..+- .....+..+.. . .+.+-+|.|++....+ +-+-.-+||.. .+++.+
T Consensus 61 ~~~~i~iDEiq~~~------------~~~~~lk~l~d---~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~P 121 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP------------DWEDALKFLVD---N---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYP 121 (128)
T ss_pred CCcEEEEehhhhhc------------cHHHHHHHHHH---h---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECC
Confidence 57899999997761 12233333332 1 1223333333332222 11222345875 788888
Q ss_pred CCHHH
Q psy522 87 PDEKT 91 (131)
Q Consensus 87 P~~~~ 91 (131)
.+..|
T Consensus 122 lsf~E 126 (128)
T PF13173_consen 122 LSFRE 126 (128)
T ss_pred CCHHH
Confidence 87765
No 243
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=83.45 E-value=13 Score=26.01 Aligned_cols=75 Identities=27% Similarity=0.288 Sum_probs=46.6
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeC
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 85 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~ 85 (131)
+..+|.+|++|.- .++. ++ .. ++..+.+-.-...|++|.+++..+.|-.+++- |-||+.| .
T Consensus 43 ~~~~pDLILLDiY---mPd~----~G-----i~----lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~-Gv~DYLi--K 103 (224)
T COG4565 43 EEFKPDLILLDIY---MPDG----NG-----IE----LLPELRSQHYPVDVIVITAASDMETIKEALRY-GVVDYLI--K 103 (224)
T ss_pred HhhCCCEEEEeec---cCCC----cc-----HH----HHHHHHhcCCCCCEEEEeccchHHHHHHHHhc-Cchhhee--c
Confidence 5578999998763 5443 11 12 33333332233579999999999999888775 8899655 3
Q ss_pred CCCHHHHHHHHHHH
Q psy522 86 LPDEKTKRRIFNIH 99 (131)
Q Consensus 86 ~P~~~~R~~il~~~ 99 (131)
|-..+.-.+-|..|
T Consensus 104 Pf~~eRl~~aL~~y 117 (224)
T COG4565 104 PFTFERLQQALTRY 117 (224)
T ss_pred ceeHHHHHHHHHHH
Confidence 44554444444444
No 244
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=83.37 E-value=4.2 Score=28.43 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=32.8
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|--+.|+|+++||- .++-+-...+.+..++.++. ..+..+|.+|...+++
T Consensus 145 ARAlvh~P~i~vlDEP----------~sGLDi~~~r~~~dfi~q~k----~egr~viFSSH~m~Ev 196 (245)
T COG4555 145 ARALVHDPSILVLDEP----------TSGLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIMQEV 196 (245)
T ss_pred HHHHhcCCCeEEEcCC----------CCCccHHHHHHHHHHHHHhh----cCCcEEEEecccHHHH
Confidence 4667789999999994 12233334456666665553 3355677777766555
No 245
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=83.26 E-value=4.7 Score=25.48 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=12.0
Q ss_pred cCCeEEEeccccccc
Q psy522 8 HAPSIVFIDEIDAVG 22 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~ 22 (131)
..+..|+|+|+|.+-
T Consensus 68 a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 68 AKGGTLYLKNIDRLS 82 (138)
T ss_dssp CTTSEEEEECGCCS-
T ss_pred cCCCEEEECChHHCC
Confidence 367889999999984
No 246
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.45 E-value=7.3 Score=26.34 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=31.7
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|++++.++
T Consensus 141 a~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~i~ 193 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAI----------DKQGVARLEALLAQHA---EQ-GGMVILTTHQDLPVA 193 (204)
T ss_pred HHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecChhhhc
Confidence 45667889999999964322 2223345555555442 22 235666777777776
No 247
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=81.87 E-value=8.3 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.9
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|-|+++||=
T Consensus 141 iARAL~~~P~lLLlDEP 157 (248)
T COG1116 141 IARALATRPKLLLLDEP 157 (248)
T ss_pred HHHHHhcCCCEEEEcCC
Confidence 45677788999999994
No 248
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=81.82 E-value=18 Score=26.51 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=68.5
Q ss_pred CCeEEEecccccccCcCCC---CCCCchhHHHHHHHHHHHHhcCCCC-CCCeEE--EeeCCC---CC--cccccccCCCc
Q psy522 9 APSIVFIDEIDAVGTKRYD---SNSGGEREIQRTMLELLNQLDGFDS-RGDVKV--IMATNR---IE--TLDPALIRPGR 77 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~v--i~ttn~---~~--~id~~l~~~gr 77 (131)
.|.++-+|++..++....- ....-...-..+...++..+.+-.. .++.++ +++|.. +. .++.++.....
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 4889999999999977421 1122233444555666665443212 234443 555543 33 45555554221
Q ss_pred ------cc-------------eEEEeCCCCHHHHHHHHHHHhcCCCCCCccc----HHHHHHHcCCCCHHHHHH
Q psy522 78 ------ID-------------RKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN----LQELIMAKDDLSGADIKA 128 (131)
Q Consensus 78 ------f~-------------~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~----~~~la~~t~g~s~~di~~ 128 (131)
|. ..+.++.-+++|-..++++|.....+....+ ...+. .+.|-.|+++..
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~-~~s~GNp~el~k 308 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLF-LSSNGNPRELEK 308 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHH-HhcCCCHHHhcc
Confidence 11 2688998899999999999987765553111 22222 234566777764
No 249
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=81.58 E-value=8.6 Score=27.46 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=51.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc---cccccCCCccceEEEeCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL---DPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i---d~~l~~~grf~~~i~~~~ 86 (131)
.-++++++++.+..+. ....++..+... .+..++|..++.++.- ...+..-+ -...+.+..
T Consensus 47 ~kliii~~~~~~~~~~-------------~~~~L~~~l~~~--~~~~~~i~~~~~~~~~~~~~k~~~~~~-~~~~i~~~~ 110 (302)
T TIGR01128 47 RRLVELRNPEGKPGAK-------------GLKALEEYLANP--PPDTLLLIEAPKLDKRKKLTKWLKALK-NAQIVECKT 110 (302)
T ss_pred CeEEEEECCCCCCCHH-------------HHHHHHHHHhcC--CCCEEEEEecCCCCHhHHHHHHHHHhc-CeeEEEecC
Confidence 4578888887653221 234455555543 2344555555432221 11121100 224678889
Q ss_pred CCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcC
Q psy522 87 PDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKD 119 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 119 (131)
|+..+...+++..++..+.. .......++..+.
T Consensus 111 ~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~ 144 (302)
T TIGR01128 111 PKEQELPRWIQARLKKLGLRIDPDAVQLLAELVE 144 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 99999999999998877654 2223444554443
No 250
>KOG2680|consensus
Probab=81.53 E-value=4.9 Score=29.89 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=27.1
Q ss_pred CCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCC
Q psy522 64 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL 105 (131)
Q Consensus 64 ~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~ 105 (131)
+|+-||-.++. |. ..|...+-+.++-++||+.-+....+
T Consensus 338 SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv 376 (454)
T KOG2680|consen 338 SPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDV 376 (454)
T ss_pred CCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhcc
Confidence 46677777776 65 24554555899999999988775544
No 251
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=80.36 E-value=5.8 Score=28.36 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=33.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+++|-...|-++++||= + ..-+......+..++..+. .. +..|+..|.+.+.+
T Consensus 150 lARAL~~~p~lllLDEP---~-------~gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 150 LARALAQNPDLLLLDEP---F-------TGVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHhccCCCEEEecCC---c-------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHHh
Confidence 57788899999999994 1 1222333445555655554 44 56677777766555
No 252
>KOG0481|consensus
Probab=80.21 E-value=2.2 Score=33.75 Aligned_cols=82 Identities=16% Similarity=0.332 Sum_probs=42.7
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC--CCCeEEEeeCCCC-----------Cccc--ccccC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRI-----------ETLD--PALIR 74 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~vi~ttn~~-----------~~id--~~l~~ 74 (131)
-.|+.|||+|++-.. ..-.-+..+-++...+-. .++.+ +.+.-|+|++|.+ +.|| +.+++
T Consensus 429 gGVvCIDEFDKMre~---DRVAIHEAMEQQTISIAK--AGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS 503 (729)
T KOG0481|consen 429 GGVVCIDEFDKMRED---DRVAIHEAMEQQTISIAK--AGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS 503 (729)
T ss_pred CCEEEeehhhccCch---hhhHHHHHHHhhhHHHhh--hcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh
Confidence 368999999998322 111112221111111111 12212 1356677887753 2343 77889
Q ss_pred CCccceEEEeCCCCHHHHHHHHHH
Q psy522 75 PGRIDRKIEFPLPDEKTKRRIFNI 98 (131)
Q Consensus 75 ~grf~~~i~~~~P~~~~R~~il~~ 98 (131)
|||..+-+.---.++|-..+..
T Consensus 504 --RFDmIFIVKD~h~~~~D~~lAk 525 (729)
T KOG0481|consen 504 --RFDMIFIVKDEHDEERDITLAK 525 (729)
T ss_pred --hccEEEEEeccCcchhhhHHHH
Confidence 9998877776544445444433
No 253
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=80.20 E-value=3.2 Score=31.17 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=37.7
Q ss_pred eEEEeeCCCC-------CcccccccCCCccceEEEeCCC-CHHHHHHHHHHHhcCC
Q psy522 56 VKVIMATNRI-------ETLDPALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTSRM 103 (131)
Q Consensus 56 v~vi~ttn~~-------~~id~~l~~~grf~~~i~~~~P-~~~~R~~il~~~l~~~ 103 (131)
.++|+|||.. ....++|++ |+. .+.++.| +.++-.+|.++.+...
T Consensus 278 ~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 278 GLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred eEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 6899999977 366899999 998 8999988 7888889999888743
No 254
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.97 E-value=3 Score=31.04 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=40.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCcc----
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRI---- 78 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf---- 78 (131)
.+|-...|.|++.||.=+ .- +.--.. .+..+++..-..+ .+.+|+-| +.+|++++-..|.
T Consensus 176 ARAla~~~~IlLMDEaFS---AL---DPLIR~---~mQdeLl~Lq~~l---~KTIvFit----HDLdEAlriG~rIaimk 239 (386)
T COG4175 176 ARALANDPDILLMDEAFS---AL---DPLIRT---EMQDELLELQAKL---KKTIVFIT----HDLDEALRIGDRIAIMK 239 (386)
T ss_pred HHHHccCCCEEEecCchh---hc---ChHHHH---HHHHHHHHHHHHh---CCeEEEEe----cCHHHHHhccceEEEec
Confidence 567778899999999722 21 001111 2333444433332 23344444 6889998876675
Q ss_pred -ceEEEeCCCC
Q psy522 79 -DRKIEFPLPD 88 (131)
Q Consensus 79 -~~~i~~~~P~ 88 (131)
...+.++.|.
T Consensus 240 dG~ivQ~Gtp~ 250 (386)
T COG4175 240 DGEIVQVGTPE 250 (386)
T ss_pred CCeEEEeCCHH
Confidence 4667777664
No 255
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=79.58 E-value=10 Score=28.86 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=10.9
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
..+|||||+|.+-
T Consensus 238 ~gtl~ld~i~~l~ 250 (457)
T PRK11361 238 EGTLLLDEIGEMP 250 (457)
T ss_pred CCEEEEechhhCC
Confidence 4689999999984
No 256
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=79.51 E-value=5.6 Score=30.42 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=40.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc--CCCC----CCCeEEEeeCCCC-C------cccccccCCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDS----RGDVKVIMATNRI-E------TLDPALIRPG 76 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~----~~~v~vi~ttn~~-~------~id~~l~~~g 76 (131)
...|||||+|.+-.. ....+..++..-. .+.. ...+-+|+||+.. + .+.+.+..
T Consensus 229 ~gtl~l~ei~~l~~~-----------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~-- 295 (463)
T TIGR01818 229 GGTLFLDEIGDMPLD-----------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH-- 295 (463)
T ss_pred CCeEEEEchhhCCHH-----------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--
Confidence 578999999997432 1223333332210 0000 1246677777642 2 12223333
Q ss_pred ccc-eEEEeCCCC--HHHHHHHHHHHhc
Q psy522 77 RID-RKIEFPLPD--EKTKRRIFNIHTS 101 (131)
Q Consensus 77 rf~-~~i~~~~P~--~~~R~~il~~~l~ 101 (131)
|+. ..|++|+.. .++...++++++.
T Consensus 296 rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 332 366666654 5566667776654
No 257
>PRK10263 DNA translocase FtsK; Provisional
Probab=78.91 E-value=3.3 Score=36.18 Aligned_cols=74 Identities=19% Similarity=0.352 Sum_probs=51.0
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC--cccccccCCCccceEEEeCCCC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE--TLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~--~id~~l~~~grf~~~i~~~~P~ 88 (131)
-||+|||+..|+... ... +...+..+-.....-+|.+|.+|++|. .|...++. -|..+|.|..-+
T Consensus 1142 IVVIIDE~AdLm~~~-------~ke----vE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-------GKK----VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhh-------hHH----HHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 579999997776432 111 222233333223345799999999986 67777777 888899999988
Q ss_pred HHHHHHHHH
Q psy522 89 EKTKRRIFN 97 (131)
Q Consensus 89 ~~~R~~il~ 97 (131)
...-..||.
T Consensus 1209 ~~DSrtILd 1217 (1355)
T PRK10263 1209 KIDSRTILD 1217 (1355)
T ss_pred HHHHHHhcC
Confidence 888888874
No 258
>COG3899 Predicted ATPase [General function prediction only]
Probab=78.90 E-value=18 Score=30.49 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=64.3
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-CCCCCCeEEEeeCCCCCcccccccCCCccceEEEe
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 84 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~ 84 (131)
.+..|-|+|+|++...= ......+..++..... ....+.| ..+.+....+.+..++...+ ..|.+
T Consensus 151 ~~~~plVi~leDlhWaD-----------~~SL~lL~~lm~~~~~~~~~~n~v--~~~h~~~~~~~~~~~~~~~i-~~I~L 216 (849)
T COG3899 151 AEEHPLVIVLEDLHWAD-----------SASLKLLQLLMDRIAIGAYRDNEV--LLLHPLRPTLGEILKSATNI-TTITL 216 (849)
T ss_pred hccCCeEEEEecccccC-----------hhHHHHHHHHHHhcchhhhhcccc--ccCCCccchhhHHhhcCCce-eEEec
Confidence 44569999999997651 1122333334333320 0111122 22222223334444443344 58999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.+.+..+=..++...+.............+.++|.| .|--+.+++
T Consensus 217 ~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~G-nPfFi~e~l 261 (849)
T COG3899 217 APLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKG-NPFFIEEFL 261 (849)
T ss_pred CcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcC-CCccHHHHH
Confidence 999999999999999887444444457778999999 775555543
No 259
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.79 E-value=11 Score=25.34 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=31.3
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP 70 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~ 70 (131)
.+|-...|.++++||--.=+ .......+..++.... . .+..+|.+|++++.+..
T Consensus 135 a~al~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 135 ARLIACQSDLWLLDEVETNL----------SKENRDLLNNLIVMKA---N-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCccccch
Confidence 45666789999999974433 2223344444554322 2 23456777777776653
No 260
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=78.76 E-value=9 Score=27.39 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=34.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccccccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 73 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~ 73 (131)
+|.+|--..|-++++||-=.- .+-.....+...+..+.. ..+.--+|..|.+++++++-+.
T Consensus 181 LiaRALv~~P~LLiLDEP~~G----------LDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 181 LIARALVKDPELLILDEPAQG----------LDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHhcCCCEEEecCcccc----------CChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccc
Confidence 367788899999999995211 111122233334433332 2234456666788888875443
No 261
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=78.45 E-value=8.8 Score=25.55 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=28.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|++++
T Consensus 138 laral~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~~~---~~-~~tili~sH~~~ 188 (190)
T TIGR01166 138 IAGAVAMRPDVLLLDEPTAGL----------DPAGREQMLAILRRLR---AE-GMTVVISTHDVD 188 (190)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeeccc
Confidence 355667789999999953322 2233445555555442 22 334555555543
No 262
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=78.33 E-value=3 Score=28.87 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=30.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ...+..+|.+|++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNL----------DARNADSIFQLLGELN---RLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHH
Confidence 345667889999999964332 2223344445554442 222345666666655543
No 263
>PRK04841 transcriptional regulator MalT; Provisional
Probab=78.23 E-value=23 Score=29.47 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=51.1
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc-cccCCCccceEEEeC-
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFP- 85 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~-~l~~~grf~~~i~~~- 85 (131)
..|.+|+|||++.+-.. .....+..++... .+.+.+|.++...-.++- .+... +..+.+.
T Consensus 120 ~~~~~lvlDD~h~~~~~----------~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~---~~~~~l~~ 181 (903)
T PRK04841 120 HQPLYLVIDDYHLITNP----------EIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR---DQLLEIGS 181 (903)
T ss_pred CCCEEEEEeCcCcCCCh----------HHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---CcceecCH
Confidence 67999999999887211 1223444444322 233344345554212211 11111 2234455
Q ss_pred ---CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCC
Q psy522 86 ---LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 122 (131)
Q Consensus 86 ---~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 122 (131)
+.+.++-.+++...+... . +..+...+.+.|+|..
T Consensus 182 ~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 182 QQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWA 219 (903)
T ss_pred HhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChH
Confidence 668899888887654432 2 2345677888888863
No 264
>COG1485 Predicted ATPase [General function prediction only]
Probab=77.64 E-value=3.2 Score=31.09 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=28.2
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC-CCCccccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-RIETLDPA 71 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn-~~~~id~~ 71 (131)
-||+|||+..- +-. -.-++..+++.+- ..+|++++|+| .|+.+-+.
T Consensus 132 ~vLCfDEF~Vt--------DI~---DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~d 178 (367)
T COG1485 132 RVLCFDEFEVT--------DIA---DAMILGRLLEALF----ARGVVLVATSNTAPDNLYKD 178 (367)
T ss_pred CEEEeeeeeec--------ChH---HHHHHHHHHHHHH----HCCcEEEEeCCCChHHhccc
Confidence 58999998531 101 1124455655553 35899999999 47777443
No 265
>KOG0732|consensus
Probab=77.47 E-value=1.3 Score=37.54 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=45.5
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|.+|+.++||||||-++|........ .....++..++.......+..+-|-+.-+. +.. ..
T Consensus 645 i~~eaR~~~psi~~ip~~d~w~~~~p~----------s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~---~~~-----~~ 706 (1080)
T KOG0732|consen 645 IFMEARKTTPSIVFIPNVDEWARVIPV----------SFLEEFLSSLDEKALSTPILELHTWDTSFE---SVN-----KS 706 (1080)
T ss_pred HHHHHhccCCceeeccchhhhhhcCcc----------hhhhcchhcchhhhhccchhhhcccccccc---ccC-----cc
Confidence 588999999999999999997655411 122223333332222222333222211100 000 23
Q ss_pred EEEeCCCCHHHHHHHHHHHhc
Q psy522 81 KIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~ 101 (131)
...+..|..+.+..+++..++
T Consensus 707 ~~t~~~p~~~s~~~ff~r~I~ 727 (1080)
T KOG0732|consen 707 VVTLSKPSAESTGAFFKRLIR 727 (1080)
T ss_pred ccccccchhhhhHHHHHHHHH
Confidence 456677888888877776653
No 266
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=77.05 E-value=8.9 Score=30.19 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=39.6
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc--CCCC----CCCeEEEeeCCCCCcccccccCCCcc-----
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDS----RGDVKVIMATNRIETLDPALIRPGRI----- 78 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~----~~~v~vi~ttn~~~~id~~l~~~grf----- 78 (131)
...|||||+|.+-.. ....+..++..-. .... ...+.+|+||+.. +.. +...|+|
T Consensus 291 ~GtL~ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~ 356 (534)
T TIGR01817 291 GGTLFLDEIGEISPA-----------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLY 356 (534)
T ss_pred CCeEEEechhhCCHH-----------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHH
Confidence 478999999998432 2223333332210 0000 0147788887642 111 2223444
Q ss_pred ----ceEEEeCCCC--HHHHHHHHHHHhc
Q psy522 79 ----DRKIEFPLPD--EKTKRRIFNIHTS 101 (131)
Q Consensus 79 ----~~~i~~~~P~--~~~R~~il~~~l~ 101 (131)
...|.+|+.. .+....++++++.
T Consensus 357 ~rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 357 YRINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred HHhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 3456666553 3555567777764
No 267
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.05 E-value=10 Score=25.56 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=30.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|+.+..++
T Consensus 138 laral~~~p~~lilDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 191 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVAL----------DELSLLTIITKIQEHR---AK-GGAVLLTSHQDLPLN 191 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccc----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCchhcc
Confidence 345667789999999964332 2223345555554432 22 335666777666654
No 268
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=76.96 E-value=10 Score=25.55 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=31.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP 70 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~ 70 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|+++..++.
T Consensus 136 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~~ 190 (201)
T cd03231 136 LARLLLSGRPLWILDEPTTAL----------DKAGVARFAEAMAGHC---AR-GGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCchhhhh
Confidence 345667789999999964433 2223344445554432 22 3346667776666653
No 269
>KOG0478|consensus
Probab=76.78 E-value=13 Score=30.55 Aligned_cols=78 Identities=28% Similarity=0.454 Sum_probs=45.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc------CCCC--CCCeEEEeeCCCCC-------------cc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMATNRIE-------------TL 68 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~--~~~v~vi~ttn~~~-------------~i 68 (131)
-.|-.|||+|++-.. ...++++.+++-. |+-. +-+.-|+|++|-.+ .+
T Consensus 527 ~GiCCIDEFDKM~dS-----------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~L 595 (804)
T KOG0478|consen 527 NGICCIDEFDKMSDS-----------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINL 595 (804)
T ss_pred CceEEchhhhhhhHH-----------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCC
Confidence 357789999998422 2345555544311 1111 13466889988222 26
Q ss_pred cccccCCCccceEE-EeCCCCHHHHHHHHHHHh
Q psy522 69 DPALIRPGRIDRKI-EFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 69 d~~l~~~grf~~~i-~~~~P~~~~R~~il~~~l 100 (131)
|+.|++ |||... -+..|++..=+.+-.|..
T Consensus 596 pptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 596 PPTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred Chhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 899999 999543 345676664444555443
No 270
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=76.55 E-value=4.1 Score=30.76 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 64 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~ 64 (131)
|....|.|+++||+|-.+..+ .++...+.+..-.-.+.-+.+..+-.|+.|.+.
T Consensus 291 la~~tpgivLiDeIdlflhP~------WQQqi~qkL~saFp~IQfIvstHsP~vlsTv~~ 344 (440)
T COG3950 291 LAKLTPGIVLIDEIDLFLHPK------WQQQINQKLLSAFPEIQFIVSTHSPFVLSTVNG 344 (440)
T ss_pred hhcCCCceEEeehhhhhcCHH------HHHHHHHHHHhhchhhhhhhhcCCceEEEeccc
Confidence 445569999999999987544 222222222222223333334455566666653
No 271
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.41 E-value=9 Score=26.14 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=31.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ..+ ..+|.+|.+.+.++
T Consensus 148 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~-~tiii~sH~~~~~~ 201 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANL----------DLEGITLVNRMISAHL---RGG-GAALVTTHGAYAAP 201 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hCC-CEEEEEecChhhhh
Confidence 345666789999999964322 2223445555555442 223 35666777766665
No 272
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=76.23 E-value=2.5 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 93 laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 93 IARALARNARLLILDEPTAAL----------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 456777889999999964322 2223345555554442 22 335555666655443
No 273
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=76.14 E-value=4.5 Score=27.61 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=12.9
Q ss_pred HhcCCeEEEeccccccc
Q psy522 6 EEHAPSIVFIDEIDAVG 22 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~ 22 (131)
-...|.++++||-..-+
T Consensus 136 l~~~p~illlDEP~~~L 152 (204)
T cd03240 136 FGSNCGILALDEPTTNL 152 (204)
T ss_pred hccCCCEEEEcCCcccc
Confidence 34679999999976544
No 274
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.95 E-value=9.2 Score=25.88 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+.. ..+..++|.+++..+.+
T Consensus 129 laral~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~~~~--~~~~t~ii~~~h~~~~~ 183 (202)
T cd03233 129 IAEALVSRASVLCWDNSTRGL----------DSSTALEILKCIRTMAD--VLKTTTFVSLYQASDEI 183 (202)
T ss_pred HHHHHhhCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHHH--hCCCEEEEEEcCCHHHH
Confidence 345666789999999953322 22233444444444421 22345666666654433
No 275
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=75.72 E-value=7.7 Score=28.25 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=31.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-.+.|.++++||--. ..+......+..++..+. .. +..+|.+|+..+.+
T Consensus 149 la~aL~~~P~lllLDEPt~----------gLD~~~~~~l~~~l~~l~---~~-g~till~sH~l~e~ 201 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTT----------GLDPQARHLMWERLRSLL---AR-GKTILLTTHFMEEA 201 (306)
T ss_pred HHHHHhCCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHH
Confidence 4567778999999999422 233334445555555442 22 44577777766554
No 276
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.26 E-value=2.5 Score=28.75 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+.
T Consensus 139 ia~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAAL----------DPALRAEMLDLVLDLH---AETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 345666789999999964433 2223344444444432 222345666776665553
No 277
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=75.04 E-value=6.9 Score=26.42 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 137 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~ 189 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGL----------DYKNMERVGELIRELA---AQ-GKAVIVITHDYEFL 189 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345667789999999953322 2233445555555442 22 33566666665544
No 278
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=74.61 E-value=30 Score=25.16 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEeeCCCCC---cccccccCCCccceEEEeCCC---CHHHHHHHHHHHhcCCCCC
Q psy522 40 MLELLNQLDGFDSRGDVKVIMATNRIE---TLDPALIRPGRIDRKIEFPLP---DEKTKRRIFNIHTSRMTLA 106 (131)
Q Consensus 40 ~~~~l~~~~~~~~~~~v~vi~ttn~~~---~id~~l~~~grf~~~i~~~~P---~~~~R~~il~~~l~~~~~~ 106 (131)
...+...+.+..+ +.++++.+++.++ .+...+.. +.....+.+| +.++...+++..++..+..
T Consensus 81 ~~~L~~~l~~~~~-~~~li~~~~~~~d~r~k~~k~l~k---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~ 149 (326)
T PRK07452 81 LAELERTLPLIPE-NTHLLLTNTKKPDGRLKSTKLLQK---LAEEKEFSLIPPWDTEGLKQLVERTAQELGVK 149 (326)
T ss_pred HHHHHHHHcCCCC-CcEEEEEeCCCcchHHHHHHHHHH---ceeEEEecCCCcccHHHHHHHHHHHHHHcCCC
Confidence 3345555565422 3455554444332 23333443 2334555443 5566677777777766654
No 279
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=74.45 E-value=5.2 Score=27.31 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 152 laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNL----------DNNNAKIIFDLMLELN---RELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 455667789999999963322 2223344444554442 22234566666665443
No 280
>COG1106 Predicted ATPases [General function prediction only]
Probab=74.30 E-value=1.9 Score=32.45 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=34.4
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 74 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~ 74 (131)
-++++||+|...... .+..++..+..-...+.+.+++||....-+|-.+.+
T Consensus 272 k~l~iDEie~~lHp~-------------lm~~~l~~~~~~~~~~niq~~~TTH~~e~id~~l~~ 322 (371)
T COG1106 272 KVLLIDEIENGLHPS-------------LMILILETLEDKVKNNNIQVFLTTHSTEFIDLLLER 322 (371)
T ss_pred ceEEeehhhhccCHH-------------HHHHHHHHHHhhcccceEEEEeecccHHHHHHHHHh
Confidence 589999999876432 222222222222234478999999999999988886
No 281
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=74.03 E-value=6.9 Score=32.15 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=41.7
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc-----ccccCCCccceE
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD-----PALIRPGRIDRK 81 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id-----~~l~~~grf~~~ 81 (131)
...|.++++||+..++... .....+..++..+. +.+..++.+|+++..+. .+++. -.+..
T Consensus 627 ~~~~~~i~iDEa~~ll~~~---------~~~~~i~~~~r~~R----K~~~~~~~~TQ~~~d~~~~~~~~~il~--n~~~k 691 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNP---------VFAAKIRDWLKTLR----KANGIVVLATQSINDALGSRIADSILE--QCATK 691 (785)
T ss_pred CCCCeEEEEechhhhcCCH---------HHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHhcCchHHHHHH--hCCEE
Confidence 3478999999999887532 12345555555553 23456667777776653 23444 56777
Q ss_pred EEeCCCC
Q psy522 82 IEFPLPD 88 (131)
Q Consensus 82 i~~~~P~ 88 (131)
|.++.|.
T Consensus 692 i~l~~~~ 698 (785)
T TIGR00929 692 IFLPNPE 698 (785)
T ss_pred EEcCCCC
Confidence 7777664
No 282
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.80 E-value=8.1 Score=25.91 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
+.+|-...|.++++||--.-+. ......+..++..+. ..+ ..+|.+|++++
T Consensus 119 la~al~~~p~vlllDEP~~~LD----------~~~~~~l~~~l~~~~---~~~-~tiiivtH~~~ 169 (192)
T cd03232 119 IGVELAAKPSILFLDEPTSGLD----------SQAAYNIVRFLKKLA---DSG-QAILCTIHQPS 169 (192)
T ss_pred HHHHHhcCCcEEEEeCCCcCCC----------HHHHHHHHHHHHHHH---HcC-CEEEEEEcCCh
Confidence 4566678899999999644332 223344444554443 223 34556665544
No 283
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=73.60 E-value=8.2 Score=26.13 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.- .+......+..++..+. ..+ ..+|.+|++++.+
T Consensus 146 la~al~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~---~~~-~tvi~~sh~~~~~ 198 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSA----------LDPELVGEVLDVMKDLA---EEG-MTMVVVTHEMGFA 198 (213)
T ss_pred HHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHH---HcC-CEEEEEeCCHHHH
Confidence 34566778999999995332 22233445555555543 222 3466666665544
No 284
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=73.58 E-value=2.5 Score=35.01 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=44.1
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc-----ccccCCCccceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD-----PALIRPGRIDRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id-----~~l~~~grf~~~i 82 (131)
..|.++++||+..++... .....+..++..+ .+.+..++.+|+++..+- .+++. -.+..|
T Consensus 626 gr~~ii~iDEaw~~l~~~---------~~~~~i~~~~kt~----RK~ng~~~~~TQs~~D~~~s~~~~~i~~--n~~t~I 690 (789)
T PRK13853 626 GRRFVMSCDEFRAYLLNP---------KFAAVVDKFLLTV----RKNNGMLILATQQPEHVLESPLGASLVA--QCMTKI 690 (789)
T ss_pred CCcEEEEEechhHHhCCH---------HHHHHHHHHHHHH----HHcCeEEEEecCCHHHHHcCchHHHHHH--hCCeEE
Confidence 469999999998887532 2234555565554 334556677888777664 33554 567889
Q ss_pred EeCCCCH
Q psy522 83 EFPLPDE 89 (131)
Q Consensus 83 ~~~~P~~ 89 (131)
.+|.|..
T Consensus 691 ~Lpn~~a 697 (789)
T PRK13853 691 FYPSPTA 697 (789)
T ss_pred EcCCccc
Confidence 9988753
No 285
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.48 E-value=29 Score=29.26 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=60.4
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 82 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i 82 (131)
+.++...|..++|||...+-.. .+...+..+++.. .+++.+|.||...-.+.-+=.| -=+..+
T Consensus 123 Ela~~~~pl~LVlDDyHli~~~----------~l~~~l~fLl~~~-----P~~l~lvv~SR~rP~l~la~lR--lr~~ll 185 (894)
T COG2909 123 ELASYEGPLYLVLDDYHLISDP----------ALHEALRFLLKHA-----PENLTLVVTSRSRPQLGLARLR--LRDELL 185 (894)
T ss_pred HHHhhcCceEEEeccccccCcc----------cHHHHHHHHHHhC-----CCCeEEEEEeccCCCCccccee--ehhhHH
Confidence 4577788999999999877322 2334555555322 3567777777653333322222 112334
Q ss_pred EeC----CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCH
Q psy522 83 EFP----LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 123 (131)
Q Consensus 83 ~~~----~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~ 123 (131)
+++ ..+.+|-.+++...... ++ +..+++.+-..|+|...
T Consensus 186 Ei~~~~Lrf~~eE~~~fl~~~~~l-~L-d~~~~~~L~~~teGW~~ 228 (894)
T COG2909 186 EIGSEELRFDTEEAAAFLNDRGSL-PL-DAADLKALYDRTEGWAA 228 (894)
T ss_pred hcChHhhcCChHHHHHHHHHcCCC-CC-ChHHHHHHHhhcccHHH
Confidence 444 45888888888765421 21 34578888888888644
No 286
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=73.38 E-value=9.6 Score=26.09 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=31.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|++++.+.
T Consensus 135 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~L~~~~---~~-~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGL----------DPIGIQELRELIRSFP---EQ-GITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHhcCCCEEEECCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHHHH
Confidence 455667789999999964322 2233445555555442 22 345666777666553
No 287
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=73.33 E-value=10 Score=25.79 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 149 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~ 201 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNL----------DPELSRDIMRLFEEFN---RR-GTTVLVATHDINLV 201 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 356667889999999953322 2233445555555442 22 33466677665544
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=73.06 E-value=24 Score=26.65 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=18.4
Q ss_pred HHHHHhcCCeEEEecccccccCc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~ 24 (131)
++.++..+|.+|+||.+-.++..
T Consensus 151 ~~~i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 151 LASIEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHHHHhcCCcEEEEcchHHhhcc
Confidence 45566789999999999988654
No 289
>PRK06526 transposase; Provisional
Probab=72.97 E-value=5.5 Score=28.35 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.9
Q ss_pred cCCeEEEeccccccc
Q psy522 8 HAPSIVFIDEIDAVG 22 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~ 22 (131)
..+.+|+|||++.+-
T Consensus 158 ~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 158 GRYPLLIVDEVGYIP 172 (254)
T ss_pred ccCCEEEEcccccCC
Confidence 457899999998764
No 290
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=72.70 E-value=5.1 Score=32.54 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=28.7
Q ss_pred eEEEeeCCC--CC---cccccccCCCccceEEEeC--CC-CHHHHHHHHHHHhcC
Q psy522 56 VKVIMATNR--IE---TLDPALIRPGRIDRKIEFP--LP-DEKTKRRIFNIHTSR 102 (131)
Q Consensus 56 v~vi~ttn~--~~---~id~~l~~~grf~~~i~~~--~P-~~~~R~~il~~~l~~ 102 (131)
..+|+..|. .. ..+++++. -|.+..++. .| +.+.|..+++.+.+.
T Consensus 277 ~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~ 329 (647)
T COG1067 277 LKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQE 329 (647)
T ss_pred eEEEeeCCHHHHHhhcccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHH
Confidence 566666663 33 34455555 466656665 46 889999999888653
No 291
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=72.69 E-value=4.1 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=31.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 164 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~ 217 (236)
T cd03267 164 IAAALLHEPEILFLDEPTIGL----------DVVAQENIRNFLKEYN---RERGTTVLLTSHYMKDI 217 (236)
T ss_pred HHHHHhcCCCEEEEcCCCCCC----------CHHHHHHHHHHHHHHH---hcCCCEEEEEecCHHHH
Confidence 456667889999999964322 2233445555554442 22234566677766544
No 292
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=72.36 E-value=3.1 Score=28.35 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-..+|.++++||--.-+. ......+..++..+. ...+..+|.+|.+++.+
T Consensus 140 aral~~~p~llllDEPt~~LD----------~~~~~~~~~~l~~~~---~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALD----------PLLREEMLALVKQLC---SERQRTLLMVTHHLSDA 192 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCC----------HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 455667899999999754332 222334444444332 22234455566655443
No 293
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=71.54 E-value=4.9 Score=34.38 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=13.8
Q ss_pred hcCCeEEEecccccccC
Q psy522 7 EHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~ 23 (131)
...||+|+|||+=..+.
T Consensus 97 ~~~P~LILiDEl~~Y~~ 113 (1035)
T PF04465_consen 97 GGRPVLILIDELVAYAR 113 (1035)
T ss_pred CCCCEEEEeecHHHHHH
Confidence 35699999999977665
No 294
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=71.28 E-value=4.9 Score=27.84 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+.
T Consensus 143 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGL----------DPASRAAIVAHVRALC---RDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEecChhhHh
Confidence 456667889999999964432 2223344444444432 222334666666665553
No 295
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=71.16 E-value=11 Score=25.91 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 144 la~al~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~ 196 (232)
T cd03218 144 IARALATNPKFLLLDEPFAGV----------DPIAVQDIQKIIKILK---DR-GIGVLITDHNVRET 196 (232)
T ss_pred HHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 455667789999999953322 2223445555555543 22 34566677665544
No 296
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=71.16 E-value=10 Score=26.22 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. . +..+|.+|++++.+
T Consensus 149 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~ 200 (237)
T cd03252 149 IARALIHNPRILIFDEATSAL----------DYESEHAIMRNMHDIC---A--GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHhc---C--CCEEEEEeCCHHHH
Confidence 456667889999999964433 2223344445554442 2 34566677766655
No 297
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=71.14 E-value=7.7 Score=29.17 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=27.4
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC-CCcccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR-IETLDP 70 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~-~~~id~ 70 (131)
.+|+|||+..- +.. ..-++..++..+- ..++++|+|+|. |+.+-+
T Consensus 129 ~lLcfDEF~V~--------Dia---DAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 129 RLLCFDEFQVT--------DIA---DAMILKRLFEALF----KRGVVLVATSNRPPEDLYK 174 (362)
T ss_pred CEEEEeeeecc--------chh---HHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC
Confidence 48999998542 111 1234445555443 357899999995 776643
No 298
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.94 E-value=4.2 Score=28.52 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=40.0
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCcc
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
+.+.-.||++|-+..+.... . ...+.++++.+..+...++++++ |-+|+.++++.+. |+
T Consensus 120 k~~~~dViIIDSls~~~~~~------~----~~~vl~fm~~~r~l~d~gKvIil--Tvhp~~l~e~~~~--ri 178 (235)
T COG2874 120 KRWEKDVIIIDSLSAFATYD------S----EDAVLNFMTFLRKLSDLGKVIIL--TVHPSALDEDVLT--RI 178 (235)
T ss_pred HhhcCCEEEEecccHHhhcc------c----HHHHHHHHHHHHHHHhCCCEEEE--EeChhhcCHHHHH--HH
Confidence 35566899999998876443 1 13455566666766666666555 4468899988887 64
No 299
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=70.91 E-value=2.1 Score=33.14 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
..+-+..|.++++||+++.+..- ....+...+ ..+...-++.+++.|++|+-++
T Consensus 519 Akllaerpn~~~iDEF~AhLD~~---------TA~rVArki----selaRe~giTlivvThrpEv~~ 572 (593)
T COG2401 519 AKLLAERPNVLLIDEFAAHLDEL---------TAVRVARKI----SELAREAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHHHhcCCCcEEhhhhhhhcCHH---------HHHHHHHHH----HHHHHHhCCeEEEEecCHHHHh
Confidence 34566789999999999986432 111222222 2223334567888888877664
No 300
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=70.68 E-value=12 Score=28.41 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=11.0
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
...|||||+|.+-
T Consensus 234 ~gtl~l~~i~~l~ 246 (445)
T TIGR02915 234 GGTLFLDEIGDLP 246 (445)
T ss_pred CCEEEEechhhCC
Confidence 5789999999984
No 301
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.50 E-value=5.1 Score=26.37 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 106 laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~ 158 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELK---KE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 356677889999999964433 2223345555554442 22 23466666665544
No 302
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=70.49 E-value=11 Score=26.53 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=31.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 163 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~l~---~~-g~tiiivsH~~~~~~ 216 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSAL----------DPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGFAR 216 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 456677889999999963322 2233445555555543 22 345566666655553
No 303
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=70.39 E-value=10 Score=26.54 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 149 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~l~---~~-~~tiii~tH~~~~~ 201 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYL----------DINHQVELMRLMRELN---TQ-GKTVVTVLHDLNQA 201 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEECCHHHH
Confidence 345667889999999963322 2233445555554442 22 34566666666654
No 304
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=70.37 E-value=5.9 Score=25.84 Aligned_cols=47 Identities=26% Similarity=0.241 Sum_probs=25.5
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
.|.++++||...=.... . ...+...+..... . +..+|.+|.+++...
T Consensus 99 ~~~llllDEp~~gld~~------~---~~~l~~~l~~~~~---~--~~~vii~TH~~~~~~ 145 (162)
T cd03227 99 PRPLYILDEIDRGLDPR------D---GQALAEAILEHLV---K--GAQVIVITHLPELAE 145 (162)
T ss_pred CCCEEEEeCCCCCCCHH------H---HHHHHHHHHHHHh---c--CCEEEEEcCCHHHHH
Confidence 78999999986543221 1 1122222332222 1 345777888766554
No 305
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=70.28 E-value=3.8 Score=28.69 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=31.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+..|-...|.++++||--.-+ +......+..++..+. .+.+..+|.+|++.+.+.
T Consensus 164 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~L~~~~---~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGL----------NPKETKELDELIAELR---NEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCC----------CHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHHHHH
Confidence 345667889999999963322 2223344444444442 232456777777766653
No 306
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.28 E-value=16 Score=28.23 Aligned_cols=102 Identities=17% Similarity=0.300 Sum_probs=58.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc-cccccCCCccce
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL-DPALIRPGRIDR 80 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i-d~~l~~~grf~~ 80 (131)
.+.+...+|.+++||-+-.++...-+.....-...+.....+...-. ..+-.+++++....-..| -|.++- |-.|.
T Consensus 161 ~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDt 237 (456)
T COG1066 161 IAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRVLE-HMVDT 237 (456)
T ss_pred HHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchhee-eeeeE
Confidence 45677899999999999999876633222222223333333433332 112246777766655555 344443 45677
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAE 107 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~ 107 (131)
.++|.- ++..+..|++.+-.+++..+
T Consensus 238 VlyFEG-d~~~~~RiLR~vKNRFG~t~ 263 (456)
T COG1066 238 VLYFEG-DRHSRYRILRSVKNRFGATN 263 (456)
T ss_pred EEEEec-cCCCceeeeehhcccCCccc
Confidence 777754 44556667776655555443
No 307
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=70.13 E-value=3.8 Score=28.32 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.-+ .......+..++..+. ...+..+|.+|.+++.+
T Consensus 136 laral~~~p~vllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 189 (230)
T TIGR02770 136 IALALLLEPPFLIADEPTTDL----------DVVNQARVLKLLRELR---QLFGTGILLITHDLGVV 189 (230)
T ss_pred HHHHHhcCCCEEEEcCCcccc----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 345666789999999964322 2223344444444432 22234566666665544
No 308
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=69.95 E-value=2.2 Score=29.30 Aligned_cols=86 Identities=12% Similarity=0.210 Sum_probs=43.2
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc-cccCCC------ccce
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP-ALIRPG------RIDR 80 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~-~l~~~g------rf~~ 80 (131)
..+.+|+||.+.+++...... ........+.+..++..+..+....++.+|.|+......+. .....| -.+.
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ 184 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKT 184 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccE
Confidence 588999999999987542111 11111112233333333333334456677776554433331 111111 2355
Q ss_pred EEEeCCCCHHHHHH
Q psy522 81 KIEFPLPDEKTKRR 94 (131)
Q Consensus 81 ~i~~~~P~~~~R~~ 94 (131)
.+.+..+..+.|..
T Consensus 185 ii~l~~~~~~~r~~ 198 (225)
T PRK09361 185 ILRLEKFRNGKRRA 198 (225)
T ss_pred EEEEEEccCCeEEE
Confidence 77777766666553
No 309
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=69.89 E-value=14 Score=26.64 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=35.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccccccc--------
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI-------- 73 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~-------- 73 (131)
+..++.+.|.+|++||.- . . ..+..++..+. .+..+|+||..+ .+.....
T Consensus 187 ~~~i~~~~P~villDE~~-----~-------~----e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~~~l~ 244 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIG-----R-------E----EDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVFKELI 244 (270)
T ss_pred HHHHHhCCCCEEEEeCCC-----c-------H----HHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHHHHHH
Confidence 446677899999999941 1 1 12333333332 245678888753 3333332
Q ss_pred CCCccceEEEeC
Q psy522 74 RPGRIDRKIEFP 85 (131)
Q Consensus 74 ~~grf~~~i~~~ 85 (131)
..+-|++.+.+.
T Consensus 245 ~~~~~~r~i~L~ 256 (270)
T TIGR02858 245 ENEAFERYVVLS 256 (270)
T ss_pred hcCceEEEEEEe
Confidence 245677777764
No 310
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=69.76 E-value=4.7 Score=27.47 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 151 IARALANDPKIILADEPTGNL----------DSETGKEVMELLRELN---KEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHccCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HhcCCeEEEEECCHHHH
Confidence 345667789999999963322 2223445555555442 22234566666665443
No 311
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.54 E-value=4.2 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--+-+ +......+..++..+. .+.+..+|.+|.+++.+
T Consensus 155 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 155 IARALMQQPKLILADEPVASL----------DPASSRQVMDLLKRIN---REEGITVIVSLHQVDLA 208 (241)
T ss_pred HHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 345667789999999964322 2223344444444432 22234566666665554
No 312
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=69.53 E-value=11 Score=25.52 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=29.7
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-CCCeEEEeeCCCCCccc
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLD 69 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~vi~ttn~~~~id 69 (131)
...|.++++||-..-+... ....+..++..+. .. .+...+|.+|++.+.+.
T Consensus 129 ~~~p~illlDEP~~glD~~----------~~~~~~~~l~~~~--~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMV----------NRKISTDLLVKEA--KKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCCEEEecCcccccCHH----------HHHHHHHHHHHHH--hcCCCcEEEEEECCcccccc
Confidence 3689999999976644322 2333444444332 12 23446777878777775
No 313
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=69.40 E-value=56 Score=26.00 Aligned_cols=82 Identities=10% Similarity=0.191 Sum_probs=46.4
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEee-C------CCCC--------cccccc
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA-T------NRIE--------TLDPAL 72 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~t-t------n~~~--------~id~~l 72 (131)
..+.||++||+=.++... .......+..++.. ....++++|.| | |... .+++.+
T Consensus 131 ~~~kvILVEDlPN~~~~~-------~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~i 199 (519)
T PF03215_consen 131 SNKKVILVEDLPNVFHRD-------TSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEI 199 (519)
T ss_pred CCceEEEeeccccccchh-------HHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHH
Confidence 357899999987665443 13344455555432 11217777776 2 1111 356666
Q ss_pred cCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 73 IRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 73 ~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
+...++ ..|.|.+-...--..-|...+.
T Consensus 200 l~~~~i-~~I~FNpIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 200 LNHPGI-TRIKFNPIAPTFMKKALKRILK 227 (519)
T ss_pred HhCCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence 654444 4788888776665555555544
No 314
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=69.40 E-value=12 Score=24.59 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ++ ..+|.+|++++.+
T Consensus 109 laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~~-~tii~~sh~~~~~ 160 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----KD-KTLIWITHHLTGI 160 (178)
T ss_pred HHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----CC-CEEEEEecCHHHH
Confidence 356667889999999964432 2223344445554442 23 3455566665555
No 315
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=69.26 E-value=14 Score=26.70 Aligned_cols=53 Identities=21% Similarity=0.465 Sum_probs=30.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-.+.|.+|++||--. .-+......+..++..+. .. +..+|.+|.+.+.+
T Consensus 135 la~al~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~~~---~~-g~tvi~~sH~~~~~ 187 (302)
T TIGR01188 135 IAASLIHQPDVLFLDEPTT----------GLDPRTRRAIWDYIRALK---EE-GVTILLTTHYMEEA 187 (302)
T ss_pred HHHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHH
Confidence 4567778899999999522 223333445555555443 22 34566677665544
No 316
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=69.15 E-value=46 Score=25.37 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=44.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
..+.|||||+..+- .. ...+..+. |.- . .++++.|++...-+-..+-.-+||. ..+.+.|.+
T Consensus 94 ~~~yifLDEIq~v~---------~W---~~~lk~l~---d~~-~-~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlS 155 (398)
T COG1373 94 EKSYIFLDEIQNVP---------DW---ERALKYLY---DRG-N-LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLS 155 (398)
T ss_pred CCceEEEecccCch---------hH---HHHHHHHH---ccc-c-ceEEEECCchhhhccchhhhcCCCc-eeEEECCCC
Confidence 34789999986651 11 12222222 211 1 1466666665544444455556795 578888889
Q ss_pred HHHHHH-------------HHHHHhcCCCC
Q psy522 89 EKTKRR-------------IFNIHTSRMTL 105 (131)
Q Consensus 89 ~~~R~~-------------il~~~l~~~~~ 105 (131)
..+... .++.|+..-+.
T Consensus 156 F~Efl~~~~~~~~~~~~~~~f~~Yl~~GGf 185 (398)
T COG1373 156 FREFLKLKGEEIEPSKLELLFEKYLETGGF 185 (398)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHhCCC
Confidence 888864 56777654333
No 317
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=68.90 E-value=4.8 Score=28.51 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||-..-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 154 laral~~~p~llllDEPt~gL----------D~~~~~~l~~~L~~l~---~~~~~tiii~tH~~~~~ 207 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWL----------DISHQIDLLELLSELN---REKGYTLAAVLHDLNQA 207 (265)
T ss_pred HHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 456677889999999964432 2223344444444432 22234567777766654
No 318
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=68.87 E-value=4.2 Score=26.48 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=25.5
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHHcC
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQELIMAKD 119 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~~~-~~~~~la~~t~ 119 (131)
...+.+..|+..+...+++..++..+..-+ .....++..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~ 157 (172)
T PF06144_consen 116 AIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLIERVG 157 (172)
T ss_dssp EEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHT
T ss_pred cceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 356888999999999999999988776532 23555666543
No 319
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=68.83 E-value=5.9 Score=29.33 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.0
Q ss_pred HHHHhcCCeEEEeccccc
Q psy522 3 RVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~ 20 (131)
.+|-.+.|.|++.||+=+
T Consensus 153 ARALa~~P~iLL~DEaTS 170 (339)
T COG1135 153 ARALANNPKILLCDEATS 170 (339)
T ss_pred HHHHhcCCCEEEecCccc
Confidence 467889999999999744
No 320
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=68.81 E-value=3.9 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=30.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--.-+ +......+..++..+. .+.+..+|.+|.+++.+
T Consensus 163 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tvii~tH~~~~~ 216 (262)
T PRK09984 163 IARALMQQAKVILADEPIASL----------DPESARIVMDTLRDIN---QNDGITVVVTLHQVDYA 216 (262)
T ss_pred HHHHHhcCCCEEEecCccccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 456677889999999964433 2223344444444442 22234566666666554
No 321
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=68.73 E-value=3.9 Score=27.75 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .+.+..+|.+|++++.+
T Consensus 141 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNL----------DAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQVEA 194 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 455667889999999964332 2223344445554442 22234566666665443
No 322
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=68.61 E-value=17 Score=28.16 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--+= .+......+..++..+. ..++..+|.+|.+.+.+.
T Consensus 412 la~al~~~p~lllLDEPt~g----------LD~~~~~~l~~~L~~l~---~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 412 IVRALVKHPTLLILDEPLQG----------LDPLNRQLVRRFVDVLI---SEGETQLLFVSHHAEDAP 466 (490)
T ss_pred HHHHHhcCCCEEEEcCcccc----------CCHHHHHHHHHHHHHHH---hcCCcEEEEEecchhhhh
Confidence 45667788999999995322 23333455555555543 234444666777666664
No 323
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=68.11 E-value=4.4 Score=27.75 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 156 laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 209 (228)
T cd03257 156 IARALALNPKLLIADEPTSAL----------DVSVQAQILDLLKKLQ---EELGLTLLFITHDLGVV 209 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 345667889999999964322 2223344555554442 22234566677665544
No 324
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=67.83 E-value=4.7 Score=28.35 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ...+..+|.+|.+.+.+.
T Consensus 162 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGL----------DVSVQARLLDLLRGLV---RELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHH
Confidence 456667889999999964432 2223334444444332 222456777777666553
No 325
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.81 E-value=4.4 Score=29.09 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 161 laral~~~p~lLlLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiiiisH~~~~~ 214 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPTGGL----------DPKGEEDFINLFERLN---KEYKKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHHHhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 355667789999999964432 2223344444544442 22234566677766544
No 326
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=67.74 E-value=5.3 Score=32.95 Aligned_cols=67 Identities=18% Similarity=0.073 Sum_probs=42.1
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc-----cccCCCccceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP-----ALIRPGRIDRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~-----~l~~~grf~~~i 82 (131)
..|.++++||+..++... .......+..+.... .+.+..++.+|.++..+.. ++.. -.+..+
T Consensus 636 ~~~~~~viDEaw~ll~~~-------~~~~~~~i~~~~r~~----RK~g~~~~~~TQ~~~D~~~~~~~~~il~--n~~~~i 702 (797)
T TIGR02746 636 KRRKICIIDEAWSLLDGA-------NPQAADFIETGYRRA----RKYGGAFITITQGIEDFYSSPEARAAYA--NSDWKI 702 (797)
T ss_pred CCceEEEEecHHHHhhcc-------cHHHHHHHHHHHHHH----hhcCceEEEEEecHHHhccCHHHHHHHh--ccccee
Confidence 468999999999988621 112334444444433 3345677788888888743 3444 456677
Q ss_pred EeCCC
Q psy522 83 EFPLP 87 (131)
Q Consensus 83 ~~~~P 87 (131)
.++.+
T Consensus 703 ~L~~~ 707 (797)
T TIGR02746 703 ILRQS 707 (797)
T ss_pred eecCC
Confidence 77765
No 327
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=67.73 E-value=5.2 Score=33.54 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=54.4
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc-ccccccCCCccceEEEeC
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET-LDPALIRPGRIDRKIEFP 85 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~-id~~l~~~grf~~~i~~~ 85 (131)
....-+++|||++.+.... . +-+...+..+......-++-+|.||++|.. +-..++. .|..+|.+.
T Consensus 637 ~lP~iviiiDe~adlm~~~-------~----k~ve~~i~rLa~~ara~GIHlilatqRps~dVit~ika--nipsrIaf~ 703 (858)
T COG1674 637 ELPYIVIIIDEYADLMMVA-------G----KELEELIARLAQKGRAAGIHLILATQRPSVDVITGIKA--NIPTRIALR 703 (858)
T ss_pred CCCeEEEEEcchHHHhhhh-------h----HHHHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHh--CCcceEEEE
Confidence 3446678999999987543 1 113333333333334568999999999888 6666777 899999999
Q ss_pred CCCHHHHHHHHH
Q psy522 86 LPDEKTKRRIFN 97 (131)
Q Consensus 86 ~P~~~~R~~il~ 97 (131)
.-++.+.+.|+.
T Consensus 704 v~s~~dsr~il~ 715 (858)
T COG1674 704 LSSKIDSRLILG 715 (858)
T ss_pred EcCccceeeecc
Confidence 888888777776
No 328
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=67.66 E-value=4.2 Score=28.57 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~L----------D~~~~~~l~~~L~~~~---~~~g~til~~sH~~~~~ 204 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDL----------DVVAQARILDLLESIV---QKRALGMLLVTHDMGVV 204 (254)
T ss_pred HHHHHhcCCCEEEEeCCCccc----------CHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHH
Confidence 456677889999999964432 2223344444444332 22234566666665554
No 329
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=67.62 E-value=25 Score=23.52 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|.++++||--.=+ +......+..++..+. ..+ ..+|.+|+++..+
T Consensus 139 a~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~-~tii~~sH~~~~~ 190 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTAL----------DKAGVALLAGLLRAHL---ARG-GIVLLTTHQDLGL 190 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---hCC-CEEEEEEcccccc
Confidence 45666789999999964432 2223345555554442 223 3466666665544
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=67.32 E-value=5.1 Score=26.54 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ .......+..++..+. .+.+..+|.+|.+++.+
T Consensus 108 laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 108 LARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLA---RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 345667889999999964322 2223344444554442 22133556666665554
No 331
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.23 E-value=7.3 Score=27.63 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 153 laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~~~~~tiiivtH~~~~~ 206 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSML----------DPDARQNLLDLVRKVK---SEHNITIISITHDLSEA 206 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCchHH
Confidence 356667889999999974433 2223344444554442 22233456666666554
No 332
>KOG0991|consensus
Probab=67.22 E-value=13 Score=26.71 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=40.7
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
--||++||+|++.... ++.+.+++.-. . +..-+..+||-.+.|=+-+.+ |+. .+.+...+.
T Consensus 114 hKIiILDEADSMT~gA-------QQAlRRtMEiy----S-----~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd 174 (333)
T KOG0991|consen 114 HKIIILDEADSMTAGA-------QQALRRTMEIY----S-----NTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSD 174 (333)
T ss_pred eeEEEeeccchhhhHH-------HHHHHHHHHHH----c-----ccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCH
Confidence 3589999999985332 22233333221 1 223466678877777666776 664 455555566
Q ss_pred HHHHHHHHHHhc
Q psy522 90 KTKRRIFNIHTS 101 (131)
Q Consensus 90 ~~R~~il~~~l~ 101 (131)
.+-..=+....+
T Consensus 175 ~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 175 QQILKRLLEVAK 186 (333)
T ss_pred HHHHHHHHHHHH
Confidence 554444444433
No 333
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=67.10 E-value=5.6 Score=28.17 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 158 laral~~~p~lllLDEPt~~L----------D~~~~~~~~~~l~~l~---~~~~~tiii~sH~~~~i 211 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSAL----------DIAHQVDVLALVHRLS---QERGLTVIAVLHDINMA 211 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 456777889999999964432 2223344445554442 22233456666665544
No 334
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=67.07 E-value=26 Score=22.94 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.8
Q ss_pred HHHhcCCeEEEecccccccC
Q psy522 4 VAEEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l~~ 23 (131)
.+....|.++++|++-.+..
T Consensus 90 ~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 90 AIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHhCCCEEEEeCcHHHhh
Confidence 34567899999999988754
No 335
>PRK15115 response regulator GlrR; Provisional
Probab=67.07 E-value=20 Score=27.25 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=39.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh--cCCCC----CCCeEEEeeCCCCCcccccccCCCccc----
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL--DGFDS----RGDVKVIMATNRIETLDPALIRPGRID---- 79 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~----~~~v~vi~ttn~~~~id~~l~~~grf~---- 79 (131)
...|||||+|.+-... ...+..++..- ..+.. ...+.+|+||+. .++..+ ..|+|.
T Consensus 229 ~gtl~l~~i~~l~~~~-----------q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~-~~~~f~~~l~ 294 (444)
T PRK15115 229 GGTLFLDEIGDMPAPL-----------QVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAM-ARGEFREDLY 294 (444)
T ss_pred CCEEEEEccccCCHHH-----------HHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHH-HcCCccHHHH
Confidence 4689999999984332 22333333221 11111 125788888874 344333 335551
Q ss_pred ---eEEEeCCCCHHHHHH----HHHHHhc
Q psy522 80 ---RKIEFPLPDEKTKRR----IFNIHTS 101 (131)
Q Consensus 80 ---~~i~~~~P~~~~R~~----il~~~l~ 101 (131)
..+.+..|.-.+|.+ ++++++.
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~ 323 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLR 323 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHH
Confidence 134455555555543 4455553
No 336
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=66.98 E-value=15 Score=25.40 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.-+ .......+.+++..+. . + ..+|.+|++.+.+.
T Consensus 154 laral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~-~tii~~sH~~~~~~ 206 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGM----------TDEETEKTAELLKSLA---G-K-HSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHhcCCCEEEecCCccCC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEECCHHHHH
Confidence 456667789999999964432 2223445555555543 2 2 35677777666543
No 337
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=66.82 E-value=12 Score=25.57 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=35.9
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCC
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~ 86 (131)
+..|.|+++||+-+-+... .......++..+. ...++.++..|.+++. + .| -+++.|.+.+
T Consensus 149 q~~P~ILLLDE~TsALD~~------nkr~ie~mi~~~v-------~~q~vAv~WiTHd~dq---a-~r--ha~k~itl~~ 209 (223)
T COG4619 149 QFMPKILLLDEITSALDES------NKRNIEEMIHRYV-------REQNVAVLWITHDKDQ---A-IR--HADKVITLQP 209 (223)
T ss_pred hcCCceEEecCchhhcChh------hHHHHHHHHHHHh-------hhhceEEEEEecChHH---H-hh--hhheEEEecc
Confidence 3569999999985543221 1122333444443 2456888888887654 1 22 5677777765
No 338
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=66.73 E-value=15 Score=27.26 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=31.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+..|-.+.|.++++||--. .-+......+..++..+. .. +..+|.+|.+.+.+
T Consensus 183 lA~aL~~~P~lLiLDEPt~----------gLD~~~r~~l~~~l~~l~---~~-g~tilisSH~l~e~ 235 (340)
T PRK13536 183 LARALINDPQLLILDEPTT----------GLDPHARHLIWERLRSLL---AR-GKTILLTTHFMEEA 235 (340)
T ss_pred HHHHHhcCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHH
Confidence 3466778899999999532 223334455555555543 22 34566677665554
No 339
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=66.69 E-value=5.1 Score=27.77 Aligned_cols=54 Identities=15% Similarity=0.341 Sum_probs=29.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 156 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASL----------DPKTSKQVMDYLKRIN---KEDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 345667789999999964432 2223344445554442 22233566666655544
No 340
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.68 E-value=5.2 Score=27.36 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ .......+..++..+. ...+..+|.+|.+++.+
T Consensus 142 la~al~~~p~lllLDEPt~~L----------D~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSAL----------DALTREQLQEELLDIW---RETGKTVLLVTHDIDEA 195 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 355667789999999953322 2223344444444431 22233566666665543
No 341
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.68 E-value=6.6 Score=27.91 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ..++..+|.+|++++.+
T Consensus 153 laral~~~p~lllLDEP~~gL----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 153 IASVLALNPEIIIFDESTSML----------DPKGKREIKKIMVDLR---KTRKKTLISITHDMDEA 206 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEEechhHH
Confidence 456677889999999963322 2223344444444432 22223555566655544
No 342
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.52 E-value=16 Score=25.09 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. . + ..+|.+|++++.+
T Consensus 149 la~al~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~-~-~tii~~sh~~~~~ 200 (234)
T cd03251 149 IARALLKDPPILILDEATSAL----------DTESERLVQAALERLM---K-N-RTTFVIAHRLSTI 200 (234)
T ss_pred HHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHhc---C-C-CEEEEEecCHHHH
Confidence 345666789999999964332 2223344555554442 2 2 3466666666555
No 343
>KOG0482|consensus
Probab=66.33 E-value=1.9 Score=34.15 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=31.6
Q ss_pred CeEEEeeCCCCC-------------cccccccCCCccceEEEeC-CCCHHHHHHHHHHHh
Q psy522 55 DVKVIMATNRIE-------------TLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHT 100 (131)
Q Consensus 55 ~v~vi~ttn~~~-------------~id~~l~~~grf~~~i~~~-~P~~~~R~~il~~~l 100 (131)
+.-++|++|-.+ .+|.++++ |||..+-+. .|+++.=..+-+|..
T Consensus 482 R~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 482 RTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred hHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhH
Confidence 466777776322 37999999 999766654 688887777777753
No 344
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.33 E-value=4.3 Score=27.65 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ...+..+|.+|++.+.+
T Consensus 142 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 142 LARALAAQPELLLLDEPFSAL----------DRALRLQLLPELKQIK---KNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCcEEEEEecCHHHH
Confidence 355667889999999953322 2223344444444432 22234566666665554
No 345
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.28 E-value=5.6 Score=27.18 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .+.+..+|.+|++++.+
T Consensus 142 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tvi~~tH~~~~~ 195 (220)
T cd03265 142 IARSLVHRPEVLFLDEPTIGL----------DPQTRAHVWEYIEKLK---EEFGMTILLTTHYMEEA 195 (220)
T ss_pred HHHHHhcCCCEEEEcCCccCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 456667889999999963322 2223344555554442 22233466666665544
No 346
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.23 E-value=4.5 Score=27.47 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 141 la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 141 LARALAREPSLLLLDEPLSAL----------DAKLREELREELKELQ---RELGITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 345666789999999963322 2223344555554442 22233456666665443
No 347
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.16 E-value=5.8 Score=28.42 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--.=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 151 laral~~~p~lllLDEPt~gL----------D~~~~~~l~~~l~~l~---~~~~~tilivsH~~~~~ 204 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSML----------DPRGRREVLETVRQLK---EQKGITVLSITHDLDEA 204 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HcCCCEEEEEecCHHHH
Confidence 456777889999999964332 2223344444554442 33234455555555544
No 348
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.15 E-value=4.8 Score=27.92 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 67 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~ 67 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.
T Consensus 147 la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~ 199 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGAL----------DAKVRKELRRWLRRLH---DELHVTTVFVTHDQEE 199 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 345666789999999964332 2223445555554442 2223456666666544
No 349
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.05 E-value=12 Score=25.83 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+. ......+..++..+. . +..+|.+|.+++.+
T Consensus 148 la~aL~~~p~llllDEP~~~LD----------~~~~~~l~~~l~~~~---~--~~tiii~sh~~~~~ 199 (236)
T cd03253 148 IARAILKNPPILLLDEATSALD----------THTEREIQAALRDVS---K--GRTTIVIAHRLSTI 199 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCC----------HHHHHHHHHHHHHhc---C--CCEEEEEcCCHHHH
Confidence 3456678899999999644332 223344444444432 3 33466666666555
No 350
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.96 E-value=11 Score=24.68 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.-+ +......+..++..+. . + ..+|.+|++++.+.
T Consensus 107 la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~---~-~-~tii~~sh~~~~~~ 159 (171)
T cd03228 107 IARALLRDPPILILDEATSAL----------DPETEALILEALRALA---K-G-KTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhc---C-C-CEEEEEecCHHHHH
Confidence 345666789999999954322 2223344444544442 2 2 45667777766653
No 351
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=65.89 E-value=5 Score=28.48 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 160 laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tviivsH~~~~~ 213 (267)
T PRK15112 160 LARALILRPKVIIADEALASL----------DMSMRSQLINLMLELQ---EKQGISYIYVTQHLGMM 213 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCcEEEEEeCCHHHH
Confidence 345667789999999964432 2223344444544442 22234456666665554
No 352
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=65.87 E-value=6.1 Score=26.93 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=12.2
Q ss_pred HHhcCCeEEEecccccccCc
Q psy522 5 AEEHAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~ 24 (131)
.+.....+++|||+|+-+..
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~ 173 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDE 173 (220)
T ss_dssp HTCS--SEEEEESTTTTS-H
T ss_pred cccccccccccccccccccc
Confidence 34444568899999986543
No 353
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=65.80 E-value=19 Score=27.63 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=41.2
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH-----hcCCC-CCCCeEEEeeCCCCCcccccccC-----CCccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ-----LDGFD-SRGDVKVIMATNRIETLDPALIR-----PGRID 79 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~-~~~~v~vi~ttn~~~~id~~l~~-----~grf~ 79 (131)
..||+||+-.+-.. ....+..+++. +.+-. ....|.+|++|+. .++.+++. .-|+.
T Consensus 175 GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~ 241 (403)
T COG1221 175 GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNI 241 (403)
T ss_pred CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhhcC
Confidence 57999999776332 23344445543 22200 1135778887773 33333322 01566
Q ss_pred eEEEeCCC--CHHHHHHHHHHHhc
Q psy522 80 RKIEFPLP--DEKTKRRIFNIHTS 101 (131)
Q Consensus 80 ~~i~~~~P--~~~~R~~il~~~l~ 101 (131)
..|++|+. -.+++..+.+++++
T Consensus 242 ~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 242 LTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred ceecCCChhhchhhHHHHHHHHHH
Confidence 66666654 34555666677654
No 354
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=65.79 E-value=5.7 Score=27.49 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 125 la~al~~~p~lllLDEPt~gL----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 178 (230)
T TIGR01184 125 IARALSIRPKVLLLDEPFGAL----------DALTRGNLQEELMQIW---EEHRVTVLMVTHDVDEA 178 (230)
T ss_pred HHHHHHcCCCEEEEcCCCcCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 345667889999999963322 2223344444444332 22234566666665543
No 355
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=65.53 E-value=27 Score=24.78 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN 63 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn 63 (131)
.+|-+..|.||++||-=+- -.+-....+.+++..+. .+-.+||.|-|
T Consensus 161 ARalAv~PeVlLmDEPtSA----------LDPIsT~kIEeLi~eLk----~~yTIviVTHn 207 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSA----------LDPISTLKIEELITELK----KKYTIVIVTHN 207 (253)
T ss_pred HHHHhcCCcEEEecCcccc----------cCchhHHHHHHHHHHHH----hccEEEEEeCC
Confidence 4677788999999995221 22223455666666664 33346666644
No 356
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=65.53 E-value=5.1 Score=28.25 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 131 laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~~~g~tiiivsH~~~~i 184 (251)
T PRK09544 131 LARALLNRPQLLVLDEPTQGV----------DVNGQVALYDLIDQLR---RELDCAVLMVSHDLHLV 184 (251)
T ss_pred HHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 456677889999999964332 2223344444444332 22133466666665554
No 357
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=65.48 E-value=18 Score=26.23 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.= -.......+..++..+. .. +..+|.+|.+++.+
T Consensus 146 la~al~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~~~~---~~-g~til~~sH~~~~~ 198 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTG----------LDPHARHLIWERLRSLL---AR-GKTILLTTHFMEEA 198 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHH
Confidence 34566788999999995322 23333445555554442 22 34566666665544
No 358
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=65.35 E-value=20 Score=25.99 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
|.+|-.+.|.++++||--.= ........+..++..+. . + ..+|.+|.+.+.+
T Consensus 144 la~al~~~p~lliLDEPt~g----------LD~~~~~~l~~~l~~~~---~-~-~tiii~sH~l~~~ 195 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTG----------LDPNQLVEIRNVIKNIG---K-D-KTIILSTHIMQEV 195 (301)
T ss_pred HHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHhc---C-C-CEEEEEcCCHHHH
Confidence 45677789999999995332 23333445555555542 2 2 4566677666654
No 359
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=65.18 E-value=7.7 Score=24.85 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.4
Q ss_pred CeEEEecccccccCc
Q psy522 10 PSIVFIDEIDAVGTK 24 (131)
Q Consensus 10 p~ii~iDe~d~l~~~ 24 (131)
.++|++||+|.+...
T Consensus 120 ~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDE 134 (169)
T ss_dssp ESEEEEETHHHHHHT
T ss_pred ceeeccCcccccccc
Confidence 578999999999753
No 360
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=65.18 E-value=18 Score=24.65 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||-..-+. ......+..++..+. . + ..+|.+|++++.+
T Consensus 150 laral~~~p~llllDEP~~~LD----------~~~~~~l~~~l~~~~---~-~-~tii~~sh~~~~~ 201 (221)
T cd03244 150 LARALLRKSKILVLDEATASVD----------PETDALIQKTIREAF---K-D-CTVLTIAHRLDTI 201 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCC----------HHHHHHHHHHHHHhc---C-C-CEEEEEeCCHHHH
Confidence 3456678899999999744332 223345555554442 2 2 3456666665554
No 361
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.14 E-value=5.5 Score=28.70 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ .......+..++..+ ....+..||.+|.+.+.+
T Consensus 156 lAraL~~~P~llllDEPt~~L----------D~~~~~~l~~~L~~l---~~~~g~tviiitHd~~~~ 209 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGL----------DPKGRKEMMEMFYKL---HKEKGLTTVLVTHSMEDA 209 (290)
T ss_pred HHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 345667889999999964332 222334444444443 223234566666665544
No 362
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=64.96 E-value=68 Score=25.37 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.8
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
...|||||+|.+-
T Consensus 299 ~GtL~LdeI~~L~ 311 (520)
T PRK10820 299 GGSVLLDEIGEMS 311 (520)
T ss_pred CCEEEEeChhhCC
Confidence 4678999999984
No 363
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=64.95 E-value=23 Score=25.13 Aligned_cols=57 Identities=9% Similarity=0.187 Sum_probs=33.7
Q ss_pred cCCeEEEecccccccCcCCC--------CCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYD--------SNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 64 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~ 64 (131)
..+.++++||+..+.....+ ++.+........+.+++.....+..++++..++|+..
T Consensus 102 G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~ 166 (249)
T cd01128 102 GKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALV 166 (249)
T ss_pred CCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehee
Confidence 46889999999887544322 2112222333444566665555445677888866653
No 364
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.89 E-value=4.9 Score=27.95 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 146 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~L~~~~---~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 146 VARALAADPPLLLMDEPFGAL----------DPITRDQLQEEFKRLQ---QELGKTIVFVTHDIDEA 199 (242)
T ss_pred HHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 456667889999999963322 2223345555554442 22234566667666544
No 365
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=64.82 E-value=7.9 Score=26.40 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=32.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.-+ +......+..++..+. . + ..+|.+|++++.+.
T Consensus 144 la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~-~-~tii~~sH~~~~~~ 196 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGL----------DPASRRAIWDLILEVR---K-G-RSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEcCCHHHHH
Confidence 345667889999999964433 2223445555555443 2 2 46777777766553
No 366
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.82 E-value=18 Score=26.01 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--.= .+......+..++..+. .. +..+|.+|.+.+.+
T Consensus 156 laral~~~p~lLlLDEPt~g----------LD~~~~~~l~~~l~~l~---~~-g~tvlivsH~~~~~ 208 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAG----------LDPEGRKEMMQLFKDYQ---KA-GHTVILVTHNMDDV 208 (287)
T ss_pred HHHHHHcCCCEEEEECCCCC----------CCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 45667788999999995332 22223344555555442 22 34455566655544
No 367
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.80 E-value=6.7 Score=28.02 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-..+|.++++||--.=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 148 laraL~~~p~llilDEPt~gL----------D~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGL----------DPQGVKELIDFLNDLP---ETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 456777889999999963322 2223344444444432 22234566677666655
No 368
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=64.63 E-value=5.5 Score=27.50 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .+.+..+|.+|.+++.+
T Consensus 140 laral~~~p~lllLDEP~~gL----------D~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSAL----------DPALRQEMLTLVSQVC---QERQLTLLMVSHSLEDA 193 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHH
Confidence 345667789999999964332 2223344444444432 22233455666666654
No 369
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=64.46 E-value=9.9 Score=26.26 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeC
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMAT 62 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~tt 62 (131)
.+|-+..|.++++||=-+ .-+++ .+.+.|.-|..+...++..|+.|-
T Consensus 164 ARaLameP~vmLFDEPTS----------ALDPE---lVgEVLkv~~~LAeEgrTMv~VTH 210 (256)
T COG4598 164 ARALAMEPEVMLFDEPTS----------ALDPE---LVGEVLKVMQDLAEEGRTMVVVTH 210 (256)
T ss_pred HHHHhcCCceEeecCCcc----------cCCHH---HHHHHHHHHHHHHHhCCeEEEEee
Confidence 467778899999998422 22332 445555556666677777777774
No 370
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=64.45 E-value=6.6 Score=27.47 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=29.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+. ......+..++..+. ...+..+|.+|.+++.+
T Consensus 157 laral~~~p~llllDEP~~~LD----------~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALD----------PELVGEVLNVIRRLA---SEHDLTMLLVTHEMGFA 210 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCC----------HHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHH
Confidence 3456667899999999644332 222334444444332 22234566666655544
No 371
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=64.43 E-value=5.8 Score=29.51 Aligned_cols=54 Identities=19% Similarity=0.410 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||.-.-+ +......+..++..+. ...++.+|.+|...+.+
T Consensus 151 IARAL~~~P~iLLlDEPts~L----------D~~t~~~i~~lL~~l~---~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSAL----------DPATTQSILELLKEIN---RRLGLTILLITHEMDVV 204 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 356677889999999963322 2223344444444442 23244566677665544
No 372
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=64.38 E-value=7.6 Score=27.66 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=16.3
Q ss_pred HHHHHhcCCeEEEeccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~ 20 (131)
|..|..-.|.|+++||+=+
T Consensus 158 Fsia~~~~pdILllDEvla 176 (249)
T COG1134 158 FSVATHVEPDILLLDEVLA 176 (249)
T ss_pred HhhhhhcCCCEEEEehhhh
Confidence 7788889999999999743
No 373
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=64.38 E-value=6 Score=28.01 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-.+.|.++++||--.=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 161 laral~~~p~illLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tiiivsH~~~~~ 214 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNL----------DMVLQAVILELLRKLQ---QAFGTAYLFITHDLRLV 214 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHH
Confidence 355667889999999963322 2222334444444332 22234566666666554
No 374
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=64.31 E-value=11 Score=25.16 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=34.1
Q ss_pred HHHHHhcC--CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccc
Q psy522 2 FRVAEEHA--PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 2 F~~A~~~~--p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+.+|-... |.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+ + .+|
T Consensus 98 laral~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tvIivSH~~~~~-----~--~~d 156 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLI---DL-GNTVILIEHNLDVL-----S--SAD 156 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH-----H--hCC
Confidence 34556677 9999999964432 2223344444444442 22 33455566655433 3 455
Q ss_pred eEEEeCC
Q psy522 80 RKIEFPL 86 (131)
Q Consensus 80 ~~i~~~~ 86 (131)
+.+.+..
T Consensus 157 ~i~~l~~ 163 (176)
T cd03238 157 WIIDFGP 163 (176)
T ss_pred EEEEECC
Confidence 5666643
No 375
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=64.29 E-value=14 Score=33.87 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=34.2
Q ss_pred CCeEEEeeCCCCCccc-----ccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC
Q psy522 54 GDVKVIMATNRIETLD-----PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id-----~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
.++++.|+||-+...- +.+.| + ...+++..|....-..|...++.+.
T Consensus 1610 ~~i~l~Gacnp~td~gRv~~~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1610 CGIILYGACNPGTDEGRVKYYERFIR--K-PVFVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred cceEEEccCCCCCCcccCccHHHHhc--C-ceEEEecCcchhhHHHHHHHHHHHH
Confidence 4689999999765542 33333 1 3468899999999999999887653
No 376
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=64.27 E-value=7.4 Score=26.31 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 137 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~ 189 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGL----------DPDGIKELRELILSLR---DQ-GITVLISSHLLSEI 189 (208)
T ss_pred HHHHHhcCCCEEEECCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHHH
Confidence 345666789999999963322 2223344445554443 22 33566667766554
No 377
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=63.98 E-value=7.3 Score=26.38 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=30.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.= -+......+..++..+. .. +..+|.+|++++.+
T Consensus 145 laral~~~p~llllDEPt~~----------LD~~~~~~~~~~l~~~~---~~-~~tvi~~sH~~~~~ 197 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAG----------LDPAGRRELLELLKKLK---AE-GKTIIIVTHDLDLL 197 (211)
T ss_pred HHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 34566778999999996332 22233445555555443 22 34566677665554
No 378
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.81 E-value=6.2 Score=27.22 Aligned_cols=54 Identities=19% Similarity=0.391 Sum_probs=29.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~~ 204 (233)
T cd03258 151 IARALANNPKVLLCDEATSAL----------DPETTQSILALLRDIN---RELGLTIVLITHEMEVV 204 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 345667789999999953322 2223344444444432 22234566666665554
No 379
>PF13175 AAA_15: AAA ATPase domain
Probab=63.72 E-value=13 Score=27.73 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=28.1
Q ss_pred EEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc
Q psy522 12 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 67 (131)
Q Consensus 12 ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~ 67 (131)
|++|||=|.-+... .++.+...+..+. ...++=||.||.+|.-
T Consensus 372 illidEPE~~LHp~----------~q~~~~~~L~~~~---~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 372 ILLIDEPELHLHPQ----------AQRKFIDFLKKLS---KNNNIQIIITTHSPFI 414 (415)
T ss_pred EEEEeCccccCCHH----------HHHHHHHHHHHHh---ccCCCEEEEECCChhh
Confidence 99999988876433 4444444444433 3455679999998753
No 380
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=63.48 E-value=5.5 Score=28.31 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.||++||--.=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 162 laral~~~p~lllLDEPt~~L----------D~~~~~~~~~~l~~~~---~~~~~tiiivsH~~~~i 215 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNL----------DLVLQAGVIRLLKKLQ---QQFGTACLFITHDLRLV 215 (268)
T ss_pred HHHHHhcCCCEEEEeCCCccc----------CHHHHHHHHHHHHHHH---HHcCcEEEEEECCHHHH
Confidence 456677889999999964332 2222334444444332 22234566666665544
No 381
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=63.44 E-value=10 Score=25.97 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=15.1
Q ss_pred HHHHHhcCCeEEEecccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAV 21 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l 21 (131)
+.+|-...|.++++||--.-
T Consensus 152 laral~~~p~illlDEP~~~ 171 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAA 171 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCc
Confidence 45566778999999997543
No 382
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=63.39 E-value=6.2 Score=26.90 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=42.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCC-------CccceE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRP-------GRIDRK 81 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~-------grf~~~ 81 (131)
.+.+|+||-+-.++........ ........+..++..+..+....++.+|.|+.........-.+| +..|..
T Consensus 103 ~~~lvvIDsi~~l~~~~~~~~~-~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~ 181 (218)
T cd01394 103 KVDLVVVDSATALYRLELGDDD-TTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVI 181 (218)
T ss_pred CCcEEEEechHHhhhHHhcCcc-chHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEE
Confidence 4899999999988643211111 11122233344444444444556777888766543332111111 245777
Q ss_pred EEeCCCCHHHH
Q psy522 82 IEFPLPDEKTK 92 (131)
Q Consensus 82 i~~~~P~~~~R 92 (131)
|.+.....+.|
T Consensus 182 i~l~~~~~~~r 192 (218)
T cd01394 182 LRLEKLRVGTR 192 (218)
T ss_pred EEEEEcCCCeE
Confidence 88876653333
No 383
>PRK11823 DNA repair protein RadA; Provisional
Probab=63.33 E-value=46 Score=25.81 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=18.8
Q ss_pred HHHHHhcCCeEEEecccccccCcC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKR 25 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~ 25 (131)
++..++..|.+|+||.+-.++...
T Consensus 149 ~~~i~~~~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 149 LATIEEEKPDLVVIDSIQTMYSPE 172 (446)
T ss_pred HHHHHhhCCCEEEEechhhhcccc
Confidence 455667789999999999887543
No 384
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.32 E-value=6.6 Score=27.14 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 147 ia~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tvi~vsH~~~~~ 200 (235)
T cd03261 147 LARALALDPELLLYDEPTAGL----------DPIASGVIDDLIRSLK---KELGLTSIMVTHDLDTA 200 (235)
T ss_pred HHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHH
Confidence 345667789999999963322 2223344444554442 22233456666665543
No 385
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.31 E-value=5.5 Score=28.60 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=30.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.-+ .......+..++..+. ...+..+|.+|++.+.+
T Consensus 156 laraL~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~l~---~~~g~tvl~vtH~~~~~ 209 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGL----------DPQSKRQVMRLLKSLQ---TDENKTIILVSHDMNEV 209 (286)
T ss_pred HHHHHHhCCCEEEEECCcccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHH
Confidence 345667889999999964432 2223344555554442 23334566666665544
No 386
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=63.25 E-value=6.3 Score=29.23 Aligned_cols=54 Identities=19% Similarity=0.400 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ...+..+|.+|.+.+.+
T Consensus 151 lAraL~~~p~iLlLDEPts~L----------D~~~~~~l~~~L~~l~---~~~g~tiilvtH~~~~i 204 (343)
T PRK11153 151 IARALASNPKVLLCDEATSAL----------DPATTRSILELLKDIN---RELGLTIVLITHEMDVV 204 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 356677889999999963322 2223344445554442 22234566677665544
No 387
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=63.11 E-value=15 Score=24.61 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=14.5
Q ss_pred HHHHHhcCCeEEEeccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~ 20 (131)
+.+|-...|.++++||--.
T Consensus 122 laral~~~p~illlDEP~~ 140 (194)
T cd03213 122 IALELVSNPSLLFLDEPTS 140 (194)
T ss_pred HHHHHHcCCCEEEEeCCCc
Confidence 3556678899999999644
No 388
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=63.09 E-value=9.9 Score=31.87 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=41.9
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc------ccccCCCccceE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD------PALIRPGRIDRK 81 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id------~~l~~~grf~~~ 81 (131)
..|.++++||+..++... .....+..++..+. + .+..++..|.+++.+. .+++. ..+..
T Consensus 664 grr~iiviDEaW~lL~~p---------~~a~fi~~~~kt~R---K-~ng~~i~iTQs~~Dll~s~i~a~aIi~--ns~tk 728 (829)
T TIGR03783 664 GVRKMILIEEAWKAIASA---------NMAEYIKYLYKTVR---K-YFGEAIVVTQEVDDIISSPIVKESIIN--NSDCK 728 (829)
T ss_pred CCcEEEEEeCHHHHhCCH---------HHHHHHHHHHHHHh---h-cCCEEEEEcCCHHHHhcChHHHHHHHH--hCCEE
Confidence 358999999998887543 12344444444443 3 3445667777776654 24555 56788
Q ss_pred EEeCCCCH
Q psy522 82 IEFPLPDE 89 (131)
Q Consensus 82 i~~~~P~~ 89 (131)
|.++.+..
T Consensus 729 IlL~q~~~ 736 (829)
T TIGR03783 729 ILLDQRKY 736 (829)
T ss_pred EEeCCcch
Confidence 88877653
No 389
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=63.01 E-value=6.1 Score=27.90 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.7
Q ss_pred HHhcCCeEEEecccccccCc
Q psy522 5 AEEHAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~ 24 (131)
++.+.|.+|+||.+-.+...
T Consensus 136 ~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 136 AVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HhcCCceEEEECCHHHHhcc
Confidence 34568999999999888644
No 390
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=62.96 E-value=11 Score=24.37 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
..+|++||++.+..
T Consensus 130 ~~~iIiDE~h~~~~ 143 (201)
T smart00487 130 VDLVILDEAHRLLD 143 (201)
T ss_pred CCEEEEECHHHHhc
Confidence 45899999999865
No 391
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=62.90 E-value=10 Score=26.22 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=28.4
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN 63 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn 63 (131)
++.+.|.+|+||.+..+.... . .... ...+..++..+..+....++.+|.++.
T Consensus 119 ~~~~~~~~vvID~l~~l~~~~--~-~~~~---~~~~~~~~~~L~~la~~~~~~ii~~~q 171 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSGSK--K-KGNR---QQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred HHhcCCCEEEEcCchhcCCCC--C-CCCH---HHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 345689999999999875332 1 1111 122333444444444444556666653
No 392
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=62.89 E-value=7.3 Score=26.86 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=29.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 153 laral~~~p~llllDEP~~gL----------D~~~~~~~~~~l~~~~---~~-~~tiii~sH~~~~~~ 206 (224)
T cd03220 153 FAIATALEPDILLIDEVLAVG----------DAAFQEKCQRRLRELL---KQ-GKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 345666789999999964432 2222334444444432 22 335666666655543
No 393
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=62.81 E-value=11 Score=26.09 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=33.3
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC--CCCc-------------
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN--RIET------------- 67 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn--~~~~------------- 67 (131)
+.+-+..|.|+++||+-.-. .+++.+..+.. -+.++|. .++=|+.|.| +.++
T Consensus 77 daiL~R~P~vvLVDELAHtN----~pgsr~~kR~q-DVeeLL~--------aGIdV~TTlNvqHlESlnd~V~~iTgv~v 143 (211)
T PF02702_consen 77 DAILARRPQVVLVDELAHTN----APGSRHKKRYQ-DVEELLD--------AGIDVYTTLNVQHLESLNDVVEQITGVRV 143 (211)
T ss_dssp HHHHHH--SEEEES-TT-B------TT-SSSBHHH-HHHHHHH--------TT-EEEEEEEGGGBGGGHHHHHHHHS---
T ss_pred HHHHhcCCCEEEeCcccccC----CCCCCCcccHH-hHHHHHH--------CCCeEEEeeeHHHhhhhHHHHHHHhCCee
Confidence 45677889999999974322 22333333222 2223331 2344666666 3444
Q ss_pred ---ccccccCCCccceEEEeCCCCHHHHH
Q psy522 68 ---LDPALIRPGRIDRKIEFPLPDEKTKR 93 (131)
Q Consensus 68 ---id~~l~~~grf~~~i~~~~P~~~~R~ 93 (131)
+|..++. +-|....+..|..+=+.
T Consensus 144 rEtVPD~~l~--~Adev~lVDi~Pe~L~~ 170 (211)
T PF02702_consen 144 RETVPDSVLD--RADEVELVDITPEELLE 170 (211)
T ss_dssp -S-B-HHHHH--T-SCEEEB---HHHHHH
T ss_pred eeeCCHHHHh--hcCeEEEecCCHHHHHH
Confidence 4455555 55666677766554333
No 394
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.71 E-value=6.3 Score=27.44 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=29.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ...+..+|.+|.+.+.+
T Consensus 142 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tii~~sH~~~~~ 195 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSAL----------DPTSTEIIEELIVKLK---NKMNLTVIWITHNMEQA 195 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeccHHHH
Confidence 345667789999999964432 2223344444444432 22223455566665554
No 395
>PRK09183 transposase/IS protein; Provisional
Probab=62.50 E-value=11 Score=26.86 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.2
Q ss_pred cCCeEEEecccccc
Q psy522 8 HAPSIVFIDEIDAV 21 (131)
Q Consensus 8 ~~p~ii~iDe~d~l 21 (131)
..|.+++|||++..
T Consensus 163 ~~~dlLiiDdlg~~ 176 (259)
T PRK09183 163 MAPRLLIIDEIGYL 176 (259)
T ss_pred cCCCEEEEcccccC
Confidence 45789999999765
No 396
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=62.15 E-value=41 Score=21.90 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=14.6
Q ss_pred HHHHHhcCCeEEEeccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~ 20 (131)
+.+|-...|.++++||--.
T Consensus 102 laral~~~p~~lllDEPt~ 120 (166)
T cd03223 102 FARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHcCCCEEEEECCcc
Confidence 3566678899999999644
No 397
>PRK08181 transposase; Validated
Probab=62.13 E-value=11 Score=27.08 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=11.8
Q ss_pred cCCeEEEeccccccc
Q psy522 8 HAPSIVFIDEIDAVG 22 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~ 22 (131)
..+.+|+|||+..+.
T Consensus 166 ~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 166 DKFDLLILDDLAYVT 180 (269)
T ss_pred hcCCEEEEecccccc
Confidence 357899999998754
No 398
>PHA00350 putative assembly protein
Probab=62.11 E-value=13 Score=28.40 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCeEEEecccccccCcCCCCCCCc------h------hHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGG------E------REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPG 76 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~------~------~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~g 76 (131)
.-++|+|||+-.+++.+....... . .....-...++..-. ..+.=++..|.++..||..++.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HR----H~G~DIiliTQ~~~~Id~~iR~-- 154 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHR----HYNWDIILLTPNIRKIHSDIRA-- 154 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhc----ccCceEEEEeCCHHHhhHHHHH--
Confidence 347999999999998874310000 0 000112222332222 2245588889999999999987
Q ss_pred ccceE
Q psy522 77 RIDRK 81 (131)
Q Consensus 77 rf~~~ 81 (131)
+.+..
T Consensus 155 lvE~~ 159 (399)
T PHA00350 155 MIEMT 159 (399)
T ss_pred hhhhe
Confidence 77653
No 399
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=62.01 E-value=9 Score=26.35 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=14.3
Q ss_pred HHHHHhcCCeEEEecccc
Q psy522 2 FRVAEEHAPSIVFIDEID 19 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d 19 (131)
+.+|-...|.++++||--
T Consensus 148 laral~~~p~llllDEPt 165 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred HHHHHhcCCCEEEEeCCc
Confidence 456677889999999963
No 400
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=61.96 E-value=18 Score=23.77 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|++.+.+
T Consensus 107 la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 159 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALK---AA-GATRIVIAHRPETL 159 (173)
T ss_pred HHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 456677889999999964332 2223445555554442 22 33455666654433
No 401
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.76 E-value=7 Score=27.97 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+.+.+
T Consensus 151 lAral~~~p~lLlLDEPt~~L----------D~~~~~~l~~~l~~l~---~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSML----------DPEGRLELIKTIKGIR---DDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 456777889999999964432 2223334444444432 22234566666655544
No 402
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=61.73 E-value=15 Score=24.84 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .+ +..+|.+|++++.+
T Consensus 147 laral~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~~~---~~-~~tiiivtH~~~~~ 199 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNL----------DPDTTWEIMNLLKKIN---KA-GTTVVVATHAKELV 199 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 356667889999999964332 2223345555554442 22 33566666665444
No 403
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=61.70 E-value=38 Score=25.02 Aligned_cols=78 Identities=12% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC-CCeEEEeeCCCCCc----ccccccCCCccceEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNRIET----LDPALIRPGRIDRKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~v~vi~ttn~~~~----id~~l~~~grf~~~i~ 83 (131)
.|-||+|+|+|.+-. .++..++..+...... +=++|+|-+..++. ++.+..+ +......
T Consensus 199 ~~lVIi~eD~EsF~~--------------~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~--~L~~~~F 262 (330)
T PF07034_consen 199 PPLVIIFEDFESFDS--------------QVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLS--LLRIKKF 262 (330)
T ss_pred CCEEEEEcccccCCH--------------HHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHh--hcCceEE
Confidence 589999999998732 3666666666554444 33666664444544 4555555 5543332
Q ss_pred eCCCCHHHHHHHHHHHhcC
Q psy522 84 FPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~ 102 (131)
--.+....-..+++..+-.
T Consensus 263 ~~~~~~~~l~~v~~~~l~~ 281 (330)
T PF07034_consen 263 QLQSSSEILERVLEKVLLS 281 (330)
T ss_pred EeCChHHHHHHHHHHHhcC
Confidence 2233455555666666543
No 404
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=61.57 E-value=8.2 Score=26.20 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.= -+......+..++..+. .. +..+|.+|.+++.+
T Consensus 143 la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tvi~~sH~~~~~ 195 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAG----------VDPKTQEDIYELLRELR---RE-GMTILVVTHDLGLV 195 (213)
T ss_pred HHHHHHcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 34566778999999995332 22233445555555443 22 33566666665544
No 405
>PF11796 DUF3323: Protein of unknown function N-terminus (DUF3323); InterPro: IPR024466 This domain is found to the N terminus of bacterial conserved hypothetical proteins which are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Beta-proteobacteria).
Probab=61.54 E-value=21 Score=24.65 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=33.5
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCCCCC--CcccHHHHHHH--cCCCCHHHHHHh
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA--EDVNLQELIMA--KDDLSGADIKAI 129 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~~~~~--~~~~~~~la~~--t~g~s~~di~~l 129 (131)
||+.-.|.+..|+.+||.++-..+=+..... ..+++.++.+. ..+|.+-++..+
T Consensus 1 G~~~G~v~L~~~t~~Er~al~~llGr~~~~~~~~~v~l~~~~~aL~~s~f~~~~L~~~ 58 (215)
T PF11796_consen 1 GRLGGTVRLTNLTEEEREALAGLLGRDFSGGKSIRVSLADFDKALRRSRFAGVDLREV 58 (215)
T ss_pred CCCceEEEeCCCCHHHHHHHHHHhCCCCCCCCCeeeeHHHHHHHHHHcCCCCCCHHHH
Confidence 6888899999999999998866654443312 34455554332 234555444443
No 406
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.32 E-value=23 Score=24.67 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. . + ..+|.+|.+++.+
T Consensus 157 laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~-~-~tiiivtH~~~~~ 208 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASAL----------DPISTAKVEELIHELK---K-D-YTIVIVTHNMQQA 208 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh---c-C-CeEEEEeCCHHHH
Confidence 355667889999999964322 2223445555555542 2 2 3456666665544
No 407
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.23 E-value=7.7 Score=27.59 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.||++||--.= .+......+..++..+. ...+..+|.+|.+++.+
T Consensus 171 lAral~~~p~illLDEPt~~----------LD~~~~~~l~~~l~~~~---~~~g~tiii~tH~~~~~ 224 (269)
T cd03294 171 LARALAVDPDILLMDEAFSA----------LDPLIRREMQDELLRLQ---AELQKTIVFITHDLDEA 224 (269)
T ss_pred HHHHHhcCCCEEEEcCCCcc----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 35566788999999995332 22223344444544442 22233566666655543
No 408
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=60.91 E-value=7.9 Score=26.60 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ...+..+|.+|.+.+.+
T Consensus 142 la~al~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 195 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGI----------QPSIIKDIGRVIRRLR---AEGGMAILLVEQYLDFA 195 (230)
T ss_pred HHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHHH
Confidence 345667789999999963322 2233445555555443 22234566666665544
No 409
>KOG0479|consensus
Probab=60.72 E-value=19 Score=29.25 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=47.1
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc------CC--CCCCCeEEEeeCCCCC-------------cc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD------GF--DSRGDVKVIMATNRIE-------------TL 68 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~--~~~~~v~vi~ttn~~~-------------~i 68 (131)
..|++|||+|++..- . .-.+++.+++-. |+ .-+.++-|+|++|-.+ .+
T Consensus 399 RGVVCIDEFDKMsDi-------D----RvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgL 467 (818)
T KOG0479|consen 399 RGVVCIDEFDKMSDI-------D----RVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGL 467 (818)
T ss_pred CceEEehhcccccch-------h----HHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCC
Confidence 478999999998421 1 123444443311 11 1124688999998543 26
Q ss_pred cccccCCCccceEEEe-CCCCHHHHHHHHHHHhc
Q psy522 69 DPALIRPGRIDRKIEF-PLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 69 d~~l~~~grf~~~i~~-~~P~~~~R~~il~~~l~ 101 (131)
+.++++ |||..+-+ .--+...=+.|-.|.++
T Consensus 468 pDSLLS--RFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 468 PDSLLS--RFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred cHHHHh--hhcEEEEEeccccchHHHHHHHHHHH
Confidence 899999 99965544 33455555556566553
No 410
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=60.70 E-value=58 Score=23.14 Aligned_cols=73 Identities=15% Similarity=0.315 Sum_probs=47.5
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.+|++|++-. +. .. .+.+..++.. ...-++.+|..+.....+|+.++. -.+..+-++ -+
T Consensus 98 ~~~LiIlDD~~~---~~------~k---~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s 158 (241)
T PF04665_consen 98 PRFLIILDDLGD---KK------LK---SKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NS 158 (241)
T ss_pred CCeEEEEeCCCC---ch------hh---hHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEec-Cc
Confidence 478999999621 10 00 1234444431 122468899999999999999988 888877775 46
Q ss_pred HHHHHHHHHHHh
Q psy522 89 EKTKRRIFNIHT 100 (131)
Q Consensus 89 ~~~R~~il~~~l 100 (131)
......|++.+.
T Consensus 159 ~~dl~~i~~~~~ 170 (241)
T PF04665_consen 159 KRDLENIYRNMN 170 (241)
T ss_pred HHHHHHHHHhcc
Confidence 666666666553
No 411
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.67 E-value=7.2 Score=25.78 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 111 la~al~~~p~llilDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSAL----------DPITRREVRALLKSLQ---AQLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 456677889999999953322 2223445555555443 22233456666655544
No 412
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=60.46 E-value=11 Score=25.15 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.3
Q ss_pred cCCeEEEecccccccCc
Q psy522 8 HAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~ 24 (131)
..|.++++||.+.-+..
T Consensus 115 ~~p~llilDEp~~~LD~ 131 (178)
T cd03239 115 KPSPFYVLDEIDAALDP 131 (178)
T ss_pred CCCCEEEEECCCCCCCH
Confidence 57899999998776543
No 413
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.41 E-value=6.3 Score=27.25 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=29.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||-..=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 141 laral~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~---~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGAL----------DLKLRKDMQLELKRLQ---KELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 345667789999999964433 2223344444544442 22233455555555544
No 414
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=60.25 E-value=7.1 Score=27.74 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.= -+......+..++..+. ...+..+|.+|.+.+.+
T Consensus 154 laral~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~~~g~tiiivsH~~~~~ 207 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVG----------QDPITMGVLVKLISELN---SALGVTCVVVSHDVPEV 207 (269)
T ss_pred HHHHHhcCCCEEEEcCCCcc----------CCHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHH
Confidence 35566778999999995332 22233445555554442 22234566666665544
No 415
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=60.10 E-value=17 Score=24.47 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|++++
T Consensus 145 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSL----------DPKNRDEVLDLLLELN---DE-GKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHH
Confidence 356667889999999964432 2223445555555443 22 334555666554
No 416
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.04 E-value=7.3 Score=27.95 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .+.+..+|.+|.+.+.+
T Consensus 152 laraL~~~p~lLilDEPt~gL----------D~~~~~~l~~~l~~l~---~~~g~tillvsH~~~~~ 205 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGL----------DPMGVSEIMKLLVEMQ---KELGLTIIIATHDIDIV 205 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHH
Confidence 456777889999999964432 2223344444544442 22233455666665554
No 417
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=60.01 E-value=7.5 Score=26.99 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|.++++||-..=+ +......+..++..+. ...+..+|.+|..++.+
T Consensus 142 aral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~---~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 142 ARALAVEPQVLLLDEPFGAL----------DAKVRKELRSWLRKLH---DEVHVTTVFVTHDQEEA 194 (237)
T ss_pred HHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 45566789999999964432 2223344545554442 22234555566655544
No 418
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=59.94 E-value=7.7 Score=27.13 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .+.+..+|.+|.+++.+.
T Consensus 159 laral~~~p~vlllDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGL----------DVSVQARLLDLLRGLV---RDLGLAVIIVTHDLGVAR 213 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 345667889999999963322 2223344444444332 222345666777665543
No 419
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=59.68 E-value=18 Score=25.00 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ..+ ..+|.+|.+++.+
T Consensus 147 la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~~-~tiii~sH~~~~~ 199 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSAL----------DPELRHEVLKVMQDLA---EEG-MTMVIVTHEIGFA 199 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HcC-CEEEEEeCCHHHH
Confidence 345667789999999964432 2223344555555442 223 3455666655554
No 420
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.30 E-value=8.3 Score=27.73 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+..|-...|.+|++||--.-+ .......+..++..+. ...+..+|.+|.+.+.+
T Consensus 155 iAraL~~~P~llllDEPt~gL----------D~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~ 208 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGL----------DPKGRDEILNKIKELH---KEYNMTIILVSHSMEDV 208 (287)
T ss_pred HHHHHHcCCCEEEEECCccCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 356677889999999963322 2223344444554442 22234566666655443
No 421
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=59.16 E-value=28 Score=23.06 Aligned_cols=56 Identities=29% Similarity=0.547 Sum_probs=28.5
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh--cCCCCC----CCeEEEeeCCCCCcccccccCCCccc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL--DGFDSR----GDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~----~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
-..|||||+|.+-.. ....+..+++.= ..+... -++-+|+||+. .+.. +...|+|.
T Consensus 94 ~GtL~Ld~I~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~-~v~~g~fr 155 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPE-----------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEE-LVEQGRFR 155 (168)
T ss_dssp TSEEEEETGGGS-HH-----------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHH-HHHTTSS-
T ss_pred ceEEeecchhhhHHH-----------HHHHHHHHHhhchhccccccccccccceEEeecCc--CHHH-HHHcCCCh
Confidence 468999999998432 334444455431 111111 25888888874 3333 23335663
No 422
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=59.15 E-value=17 Score=24.64 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ..+ ..+|.+|.+++.+
T Consensus 148 la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~-~tii~~tH~~~~~ 200 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNL----------DPDLSERILDLLKRLN---KRG-TTVIVATHDLSLV 200 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HcC-CEEEEEeCCHHHH
Confidence 345666789999999964332 2223344555554442 223 3466666665544
No 423
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=59.05 E-value=29 Score=23.94 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=29.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+ . + +..+|.+|.+++.+
T Consensus 150 la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~---~-~-g~~vi~~sh~~~~~ 201 (238)
T cd03249 150 IARALLRNPKILLLDEATSAL----------DAESEKLVQEALDRA---M-K-GRTTIVIAHRLSTI 201 (238)
T ss_pred HHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHh---c-C-CCEEEEEeCCHHHH
Confidence 345667789999999964432 222334444555443 2 3 33456666665554
No 424
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=58.98 E-value=8 Score=27.28 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.- .+......+..++..+. ...+..+|.+|.+++.+
T Consensus 139 laral~~~p~lllLDEPt~~----------LD~~~~~~l~~~L~~~~---~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGA----------LDAFTREQMQTLLLKLW---QETGKQVLLITHDIEEA 192 (255)
T ss_pred HHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 45566788999999995332 22233444555554431 12233466666666554
No 425
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=58.96 E-value=7.8 Score=27.36 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ...+..+|.+|.+++.+.
T Consensus 161 laral~~~p~vllLDEP~~~L----------D~~~~~~l~~~l~~l~---~~~~~tiiivsH~~~~i~ 215 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGL----------DPIASMKVESLIQSLR---LRSELTMVIVSHNLHQVS 215 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEECCHHHHH
Confidence 345566789999999964432 2223334444444432 122234555666666553
No 426
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=58.67 E-value=19 Score=24.98 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||-..-+ +......+..++..+. .++ ..+|.+|.+++.+
T Consensus 152 laral~~~p~llilDEPt~~L----------D~~~~~~l~~~l~~~~---~~~-~tii~~sh~~~~~ 204 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAAL----------DPEITAQIVSIIRELA---ETG-ITQVIVTHEVEVA 204 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcC----------CHHHHHHHHHHHHHHH---HcC-CEEEEEeCCHHHH
Confidence 345666789999999965433 2223345555555442 223 3456666665544
No 427
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.06 E-value=27 Score=25.06 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.1
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.+||+||=
T Consensus 156 LARAialdPell~~DEP 172 (263)
T COG1127 156 LARAIALDPELLFLDEP 172 (263)
T ss_pred HHHHHhcCCCEEEecCC
Confidence 46777888999999993
No 428
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=57.97 E-value=12 Score=26.39 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.=+ +......+..++..+. . + ..+|.+|.+++.+.
T Consensus 162 laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~-~-~tvi~vtH~~~~~~ 214 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSAL----------DPISTLRIEELMHELK---E-Q-YTIIIVTHNMQQAA 214 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEecCHHHHH
Confidence 456667789999999963322 2223344555555443 2 2 34666666666553
No 429
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=57.58 E-value=22 Score=24.74 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 155 la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tvi~~tH~~~~~ 207 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSAL----------DPELVGEVLNTIRQLA---QE-KRTMVIVTHEMSFA 207 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 345667789999999964432 2223344444554442 22 33455666665544
No 430
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=57.41 E-value=17 Score=25.72 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEee
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~t 61 (131)
.+|-.+.|-|+++||-=+ .-+++ +..+++.-|..+...+-..++.|
T Consensus 148 ARALaM~P~vmLFDEPTS----------ALDPE---lv~EVL~vm~~LA~eGmTMivVT 193 (240)
T COG1126 148 ARALAMDPKVMLFDEPTS----------ALDPE---LVGEVLDVMKDLAEEGMTMIIVT 193 (240)
T ss_pred HHHHcCCCCEEeecCCcc----------cCCHH---HHHHHHHHHHHHHHcCCeEEEEe
Confidence 467778899999999533 22333 44445555555445554455554
No 431
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=57.37 E-value=46 Score=25.52 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=10.5
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
...+||||+|.+-
T Consensus 233 ~Gtl~l~~i~~l~ 245 (469)
T PRK10923 233 GGTLFLDEIGDMP 245 (469)
T ss_pred CCEEEEeccccCC
Confidence 4678999999984
No 432
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.35 E-value=18 Score=25.82 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ .......+..++..+. .. +..+|.+|.+++.+
T Consensus 156 la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiiivsH~~~~~ 208 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGL----------DPKGRKELMTLFKKLH---QS-GMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeccHHHH
Confidence 456677889999999964432 2223445555555442 22 34566666665544
No 433
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=57.22 E-value=20 Score=30.13 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=39.8
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc-----cccCCCccc
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP-----ALIRPGRID 79 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~-----~l~~~grf~ 79 (131)
+....|.++++||.-..+... .....+..++..+. +.+ ..++.+|++++.+.. +++. -.+
T Consensus 683 ~l~~~p~illlDE~w~~L~d~---------~~~~~i~~~lk~~R---K~g-~~vil~TQs~~d~~~s~i~~~ile--n~~ 747 (852)
T PRK13891 683 ALKGQPAVIILDEAWLMLGHP---------AFRAKIREWLKVLR---KAN-CLVLMATQSLSDAANSGILDVIVE--STA 747 (852)
T ss_pred HhcCCCCEEEEeCchhhcCCH---------HHHHHHHHHHHHHH---hcC-CEEEEEeCCHHHHhhCchHHHHHH--cCC
Confidence 445679999999987766322 12344555554443 333 456667777666643 2222 345
Q ss_pred eEEEeCCCC
Q psy522 80 RKIEFPLPD 88 (131)
Q Consensus 80 ~~i~~~~P~ 88 (131)
..|.++.|.
T Consensus 748 t~I~Lpn~~ 756 (852)
T PRK13891 748 TKIFLPNVY 756 (852)
T ss_pred cceecCCCc
Confidence 667777663
No 434
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=57.14 E-value=13 Score=25.40 Aligned_cols=51 Identities=16% Similarity=0.304 Sum_probs=29.4
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|.++++||--+-+ +......+..++..+. .. ..+|.+|++++.+
T Consensus 153 a~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~--~tii~~sH~~~~~ 203 (227)
T cd03260 153 ARALANEPEVLLLDEPTSAL----------DPISTAKIEELIAELK---KE--YTIVIVTHNMQQA 203 (227)
T ss_pred HHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh---hC--cEEEEEeccHHHH
Confidence 45666789999999963322 2223344445554442 22 4566677766544
No 435
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=57.12 E-value=27 Score=26.72 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=31.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-.+.|.|+++||=-.-+ .......+..++..+. .. +..+|.+|.+++.+
T Consensus 150 IArAL~~~P~iLLLDEPtsgL----------D~~~~~~l~~lL~~l~---~~-g~TIIivsHdl~~~ 202 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASL----------DINHQVRTLELVRRLV---DD-GKTAVAAIHDLDLA 202 (402)
T ss_pred HHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEECCHHHH
Confidence 456777899999999953322 2223344445555543 22 34567777766555
No 436
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=57.09 E-value=11 Score=25.89 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 154 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~ 206 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGL----------NPEETEELAELIRELR---ER-GITVLLVEHDMDVV 206 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 345667789999999963322 2223445555555443 22 23466666665554
No 437
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=57.08 E-value=19 Score=24.93 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=29.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ..+ ..+|.+|.+++.+
T Consensus 148 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~g-~tiii~sH~~~~~ 200 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGV----------DPISVIDIKRIIEHLR---DSG-LGVLITDHNVRET 200 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---hcC-CEEEEEEcCHHHH
Confidence 455667889999999964432 2223344444444442 233 3455566655444
No 438
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=56.92 E-value=19 Score=24.25 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=28.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+ . + +..+|.+|++++.+
T Consensus 136 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~---~-~-~~tiii~th~~~~~ 187 (207)
T cd03369 136 LARALLKRPRVLVLDEATASI----------DYATDALIQKTIREE---F-T-NSTILTIAHRLRTI 187 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHh---c-C-CCEEEEEeCCHHHH
Confidence 345666789999999964332 222334444454443 2 2 33455566665544
No 439
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.84 E-value=31 Score=24.03 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
.+|-...|.++++||--.-+ .......+..++..+. ++ ..+|.+|++.+.+.
T Consensus 159 aral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~----~~-~tilivsh~~~~~~ 210 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSAL----------DPVSTMRIEELMQELK----QN-YTIAIVTHNMQQAA 210 (251)
T ss_pred HHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh----cC-CEEEEEeCCHHHHH
Confidence 45666789999999964332 2223345555555542 22 35666666655543
No 440
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=56.82 E-value=22 Score=23.90 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=14.1
Q ss_pred HHHHhcCCeEEEeccccc
Q psy522 3 RVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~ 20 (131)
.+|-...|.++++||-..
T Consensus 139 aral~~~p~llllDEP~~ 156 (204)
T cd03250 139 ARAVYSDADIYLLDDPLS 156 (204)
T ss_pred HHHHhcCCCEEEEeCccc
Confidence 456678899999999644
No 441
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=56.70 E-value=12 Score=26.84 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|.++++||--.-+ +......+..++..+. .+.+..+|.+|.+++.+
T Consensus 156 aral~~~p~llllDEPt~gL----------D~~~~~~l~~~l~~l~---~~~g~tillvtH~~~~~ 208 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAML----------DPSGRREVVNTIKELN---KKYGITIILITHYMEEA 208 (280)
T ss_pred HHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecChHHH
Confidence 45667889999999964322 2223344445554442 22244566666666655
No 442
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=56.59 E-value=10 Score=29.64 Aligned_cols=54 Identities=9% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--+-+ +......+..++..+. .+.+..||.+|.+++.+
T Consensus 179 iA~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 179 LARQLAKEPFLFLADEPTGTL----------DPQTAKLVHNALEEAV---KASGISMVLTSHWPEVI 232 (520)
T ss_pred HHHHHhcCCCEEEeeCCcccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHH
Confidence 456777889999999953332 2223344444444432 22234567777776655
No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.57 E-value=11 Score=24.31 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=29.4
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
..|-..+|.++++||-..=+.. .....+..++..+. .. +..++.+|++.+.++
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~----------~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDP----------ASRERLLELLRELA---EE-GRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCH----------HHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 4455677999999997543322 12334444444432 22 235666776665554
No 444
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.51 E-value=30 Score=24.07 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. . + ..+|.+|.+++.+
T Consensus 158 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~-~-~tiiiisH~~~~~ 209 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSAL----------DPISSSEIEETLMELK---H-Q-YTFIMVTHNLQQA 209 (251)
T ss_pred HHHHHhcCCCEEEecCCCccC----------CHHHHHHHHHHHHHHH---c-C-CeEEEEECCHHHH
Confidence 345667889999999964432 2223445555555442 2 2 3466666665554
No 445
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=56.48 E-value=12 Score=26.63 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..||.+|.+++.+
T Consensus 153 laraL~~~p~llllDEPt~~L----------D~~~~~~l~~~L~~~~---~~-g~tviivsH~~~~~ 205 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGV----------DVKTEARIISLLRELR---DE-GKTMLVSTHNLGSV 205 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 345667789999999964322 2233445555555442 22 33466667666544
No 446
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=56.29 E-value=23 Score=23.45 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+.+.+
T Consensus 115 la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~ 167 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGV----------DVGAKAEIYRLIRELA---DA-GKAVLLISSELDEL 167 (182)
T ss_pred HHHHHccCCCEEEECCCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345666789999999964432 2223344555554442 22 23456666655444
No 447
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=56.21 E-value=22 Score=24.71 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=29.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.-+ +......+..++..+. ..+ ..+|.+|++++.+
T Consensus 156 laral~~~p~illLDEPt~~L----------D~~~~~~l~~~l~~l~---~~~-~tiii~sH~~~~~ 208 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGL----------DIDALKIVADGVNSLR---DGK-RSFIIVTHYQRIL 208 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---hCC-CEEEEEeCCHHHH
Confidence 345667889999999963322 2223344444444442 222 3456666655444
No 448
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=56.09 E-value=11 Score=25.74 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=32.7
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI 65 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~ 65 (131)
...+.+|+||.+-.++..... +..........+..++..+..+....++.+|.|+...
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~-~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFI-GRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhc-CCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 457889999999988754311 1111111223445555555555555667777766433
No 449
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.05 E-value=14 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=31.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.++++||--.=+ +......+..++..+. . + ..+|.+|++++.+.
T Consensus 161 laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~-~-~tiii~tH~~~~i~ 213 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSAL----------DPIATMKVEELIHSLR---S-E-LTIAIVTHNMQQAT 213 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEeCCHHHHH
Confidence 345666789999999963322 2223345555554442 2 2 45677777766654
No 450
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=55.97 E-value=8.8 Score=27.01 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+. ......+..++..+. ...+..+|.+|.+.+.+
T Consensus 126 iaraL~~~p~llllDEPt~~LD----------~~~~~~l~~~l~~~~---~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 126 IAACLSKDADIYLLDEPSAYLD----------VEQRLMASKVIRRFA---ENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHHHhcCCCEEEEeCCcccCC----------HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 3456677899999999644332 223334444444432 22234566666665543
No 451
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=55.82 E-value=22 Score=24.18 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 147 laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~ 199 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGL----------DVMATRALREFIRQLR---AL-GKCILFSTHIMQEV 199 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345667889999999964432 2233445555555442 22 33566666665544
No 452
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=55.43 E-value=4.9 Score=33.82 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=39.0
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccccc---ccCCCccceEEEe
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA---LIRPGRIDRKIEF 84 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~---l~~~grf~~~i~~ 84 (131)
..|.++++||+..++.. ......+..++..+. +.+..++++|.++..+..+ ++. -.+..|.+
T Consensus 732 gr~~~~viDEaw~l~~~---------~~~a~fi~~~~k~~R----K~g~~~~~aTQsi~D~~~sa~~il~--ns~~~i~L 796 (893)
T TIGR03744 732 GRPIVMVTDEGHIITTN---------PLLAPYVVKITKMWR----KLGAWFWLATQNLADFPDSAEKMLN--MIEWWLCL 796 (893)
T ss_pred CceEEEEeehHhhhhcC---------HHHHHHHHHHHHHHH----hcCcEEEEEeCCHHHhhhHHHHHHH--hchhhhhh
Confidence 45899999999887422 122344444444443 3455677888877776533 333 34566666
Q ss_pred CCCC
Q psy522 85 PLPD 88 (131)
Q Consensus 85 ~~P~ 88 (131)
+.|.
T Consensus 797 ~q~~ 800 (893)
T TIGR03744 797 NMPP 800 (893)
T ss_pred cCCH
Confidence 6554
No 453
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=55.34 E-value=10 Score=27.92 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--.-+ +......+..++..+. ...+..+|.+|.+...+
T Consensus 164 iArAL~~~P~llilDEPts~L----------D~~~~~~il~lL~~l~---~~~g~til~iTHdl~~~ 217 (326)
T PRK11022 164 IAMAIACRPKLLIADEPTTAL----------DVTIQAQIIELLLELQ---QKENMALVLITHDLALV 217 (326)
T ss_pred HHHHHHhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 356677889999999964432 2223344444444442 33344566677665544
No 454
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.29 E-value=11 Score=26.82 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=14.5
Q ss_pred HHHHHhcCCeEEEeccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~ 20 (131)
+.+|-...|.++++||--.
T Consensus 151 lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 151 VAGIIALRPEIIILDESTS 169 (277)
T ss_pred HHHHHHcCCCEEEEeCCcc
Confidence 4566778899999999633
No 455
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=55.21 E-value=11 Score=25.89 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 157 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNL----------DRQTGDKIADLLFSLN---REHGTTLILVTHDLQLA 210 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 345666789999999963322 2223345555554442 22233456666665433
No 456
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.12 E-value=12 Score=26.03 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. . + ..+|.+|.+++.+
T Consensus 156 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~-~-~tii~~sh~~~~~ 207 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSAL----------DPIATHKIEELMEELK---K-N-YTIVIVTHSMQQA 207 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh---c-C-CeEEEEecCHHHH
Confidence 345667789999999964422 2223445555665553 2 2 3566666665554
No 457
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.09 E-value=16 Score=25.45 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. . + ..+|.+|.+.+.+
T Consensus 153 laral~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~-~-~tiii~tH~~~~~ 204 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSAL----------DPISSGVIEELLKELS---H-N-LSMIMVTHNMQQG 204 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHh---C-C-CEEEEEecCHHHH
Confidence 456677889999999964433 2223344444554442 2 2 3466666665544
No 458
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=54.93 E-value=22 Score=24.17 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=29.3
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 144 aral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~ 195 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGL----------APKIVEEIFEAIRELR---DE-GVTILLVEQNARFA 195 (222)
T ss_pred HHHHhcCCCEEEECCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 45666789999999963322 2223345555554442 22 34566666665543
No 459
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=54.93 E-value=10 Score=26.82 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 144 laraL~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 144 LARALIHRPGLLLLDEPLGAL----------DALTRIEMQDLIESLW---QQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 456667889999999963322 2223344444554432 22233466666665544
No 460
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=54.92 E-value=62 Score=22.57 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=28.7
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
.+|--++|.+++-||= ...-++....-+..+++.+. ..+. .|+.+|.+.+-++
T Consensus 149 ARAiV~~P~vLlADEP----------TGNLDp~~s~~im~lfeein---r~Gt-TVl~ATHd~~lv~ 201 (223)
T COG2884 149 ARAIVNQPAVLLADEP----------TGNLDPDLSWEIMRLFEEIN---RLGT-TVLMATHDLELVN 201 (223)
T ss_pred HHHHccCCCeEeecCC----------CCCCChHHHHHHHHHHHHHh---hcCc-EEEEEeccHHHHH
Confidence 4566689999998882 22233334444555555554 3333 4555555544443
No 461
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.88 E-value=20 Score=25.56 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+.+.+
T Consensus 149 laraL~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tili~tH~~~~~ 201 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYL----------DPRGQETLMEILDRLH---NQ-GKTVIVATHDVDLA 201 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 456777889999999964332 2223344555554442 23 34456666655544
No 462
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=54.73 E-value=10 Score=27.89 Aligned_cols=54 Identities=19% Similarity=0.402 Sum_probs=30.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--.-+ +......+..++..+. ...+..+|.+|.+...+
T Consensus 169 iArAL~~~P~llilDEPts~L----------D~~~~~~i~~lL~~l~---~~~g~tii~itHdl~~v 222 (330)
T PRK15093 169 IAIALANQPRLLIADEPTNAM----------EPTTQAQIFRLLTRLN---QNNNTTILLISHDLQML 222 (330)
T ss_pred HHHHHHCCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHH
Confidence 456777889999999963322 2223344444444442 33344566677665444
No 463
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=54.70 E-value=15 Score=25.01 Aligned_cols=46 Identities=17% Similarity=0.071 Sum_probs=24.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.|.++++||.-.-+. ......+..++..+. .. +..+|.+|++++.+
T Consensus 151 ~~~~lllDEp~~~lD----------~~~~~~~~~~l~~~~---~~-~~tii~itH~~~~~ 196 (213)
T cd03279 151 RLEALFIDEGFGTLD----------PEALEAVATALELIR---TE-NRMVGVISHVEELK 196 (213)
T ss_pred CCCEEEEeCCcccCC----------HHHHHHHHHHHHHHH---hC-CCEEEEEECchHHH
Confidence 578999999754322 222334444454442 22 33566666655544
No 464
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.64 E-value=20 Score=24.22 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 139 la~al~~~p~~lllDEP~~~L----------D~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~ 191 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGL----------DPVNVELLKDVIRELA---RA-GKTVILSTHQMELV 191 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 445666789999999964322 2223344545554442 22 34567777765544
No 465
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=54.51 E-value=50 Score=22.66 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=29.9
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccc
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPAL 72 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l 72 (131)
....|+++++||.-.-... .........++..+.. .......+|.+|...+.+....
T Consensus 105 ~~~~~slvllDE~~~gtd~---------~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDT---------EDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred hCCCCcEEEeccccCCCCH---------HHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 3467999999997442211 1112333334444421 1122446777888776665443
No 466
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=54.39 E-value=13 Score=24.94 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHHHhcCCeEEEeccccc
Q psy522 3 RVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~ 20 (131)
.+|-...|.++++||--.
T Consensus 83 aral~~~p~lllLDEPts 100 (177)
T cd03222 83 AAALLRNATFYLFDEPSA 100 (177)
T ss_pred HHHHhcCCCEEEEECCcc
Confidence 456667899999999643
No 467
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=54.38 E-value=28 Score=23.65 Aligned_cols=50 Identities=24% Similarity=0.283 Sum_probs=28.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
+.+|-...|.++++||--.=+ +......+..++..+. .. ..+|.+|.+.+
T Consensus 151 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~--~tii~~sH~~~ 200 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAM----------DMNSEERLKERLRQLL---GD--KTLIIITHRPS 200 (220)
T ss_pred HHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHhc---CC--CEEEEEeCCHH
Confidence 345666789999999963322 2223345555554442 22 45666666554
No 468
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=54.28 E-value=21 Score=24.69 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.=+ +......+..++..+. ..+. .+|.+|.+++.+
T Consensus 148 la~al~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~-tiii~sH~~~~~ 200 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGL----------APIIIQQIFDTIEQLR---EQGM-TIFLVEQNANQA 200 (237)
T ss_pred HHHHHHhCCCEEEEcCccccC----------CHHHHHHHHHHHHHHH---HCCC-EEEEEeCcHHHH
Confidence 345666789999999963322 2223344445554442 2333 455566665543
No 469
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=54.15 E-value=20 Score=26.15 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+..|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+.+.+
T Consensus 176 lA~aL~~~P~lLlLDEPt~~L----------D~~~~~~l~~~l~~l~---~~-g~tiiivtHd~~~~ 228 (305)
T PRK13651 176 LAGILAMEPDFLVFDEPTAGL----------DPQGVKEILEIFDNLN---KQ-GKTIILVTHDLDNV 228 (305)
T ss_pred HHHHHHhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeeCHHHH
Confidence 355667889999999964433 2223344445554443 22 33455555555443
No 470
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=53.95 E-value=17 Score=30.28 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=42.2
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc-----ccccCCCccceE
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD-----PALIRPGRIDRK 81 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id-----~~l~~~grf~~~ 81 (131)
...|.++++||+...+... .....+..++..+. +. +..++.+|++++.+- ++++. -....
T Consensus 640 ~g~p~il~iDE~w~~L~~~---------~~~~~i~~~lk~~R---K~-~~~~i~~TQ~~~d~~~s~~~~~i~~--~~~t~ 704 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNP---------VFAPKIKDWLKVLR---KL-NTFVIFATQSVEDASKSAISDTLVQ--QTATQ 704 (800)
T ss_pred cCCCcEEEEeCChhhCCCH---------HHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHHhChhHHHHHH--hCCeE
Confidence 4579999999998876532 12334445554442 33 345677777766643 34444 56677
Q ss_pred EEeCCCCHH
Q psy522 82 IEFPLPDEK 90 (131)
Q Consensus 82 i~~~~P~~~ 90 (131)
|.+|.|+..
T Consensus 705 I~lpn~~a~ 713 (800)
T PRK13898 705 IFLPNLKAT 713 (800)
T ss_pred EEcCChhhH
Confidence 888877543
No 471
>KOG0058|consensus
Probab=53.91 E-value=22 Score=29.32 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=15.3
Q ss_pred HHHHhcCCeEEEeccccccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVG 22 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~ 22 (131)
.+|--..|+|+++||+=+-+
T Consensus 616 ARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSAL 635 (716)
T ss_pred HHHHhcCCCEEEEechhhhc
Confidence 45666889999999985543
No 472
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=53.74 E-value=75 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=20.2
Q ss_pred eEEEeeCC----CCCcccccccCCCccceEEEeCCCCHHHHHHHH
Q psy522 56 VKVIMATN----RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF 96 (131)
Q Consensus 56 v~vi~ttn----~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il 96 (131)
.-++.|.| ....+|+.++. -| +.+.+..||.+.-.+++
T Consensus 135 ~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 135 CGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp -EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHHH
T ss_pred eeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHHH
Confidence 44555666 34678999987 67 68999999988754443
No 473
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=53.47 E-value=33 Score=23.43 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=29.6
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|.++++||--.-+ +......+..++..+. . + ..+|.+|.+++.+
T Consensus 162 aral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~-~tii~~sh~~~~~ 212 (226)
T cd03248 162 ARALIRNPQVLILDEATSAL----------DAESEQQVQQALYDWP---E-R-RTVLVIAHRLSTV 212 (226)
T ss_pred HHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHc---C-C-CEEEEEECCHHHH
Confidence 45667889999999964432 2223445555555443 2 2 3566666665554
No 474
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.31 E-value=13 Score=26.64 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+..|-...|.++++||--.-+ +......+..++..+. ...+..||.+|++.+.+
T Consensus 154 laral~~~P~llllDEPt~gL----------D~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSML----------DPAGKEQILKLIRKLK---KKNNLTVISITHDIDEA 207 (282)
T ss_pred HHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 356677889999999963322 2223344444554442 22233455555555544
No 475
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.20 E-value=23 Score=25.42 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+..|-...|.||++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 155 iA~aL~~~p~illLDEPt~gL----------D~~~~~~l~~~l~~l~---~~-g~til~vtHd~~~~ 207 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGL----------DPKARIEMMQLFESIH---QS-GQTVVLVTHLMDDV 207 (288)
T ss_pred HHHHHHhCCCEEEEECCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 345667889999999964332 2223345555555443 22 34566777766544
No 476
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=53.19 E-value=65 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=29.6
Q ss_pred CeEEEeeCCC--CCcccccccCCCccc---eEEEeCC--C-CHHHHHHHHHHHh
Q psy522 55 DVKVIMATNR--IETLDPALIRPGRID---RKIEFPL--P-DEKTKRRIFNIHT 100 (131)
Q Consensus 55 ~v~vi~ttn~--~~~id~~l~~~grf~---~~i~~~~--P-~~~~R~~il~~~l 100 (131)
.+.+|+++|. ...++++|.. ||. ..+++.. + +.+.+..+++.+-
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~ia 328 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVA 328 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHH
Confidence 4678888876 3667999998 886 5566552 2 4666666666544
No 477
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=53.03 E-value=33 Score=26.58 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=31.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+..|-...|.++++||--+- -+......+..++..+. .. +..+|.+|++++.+
T Consensus 146 la~al~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~~-g~tvii~tH~~~~~ 198 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDG----------LDVASRQQLAELLASLH---QS-GITLVLVLNRFDEI 198 (490)
T ss_pred HHHHHHcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---hc-CCeEEEEeCCHHHH
Confidence 34566778999999995332 23334455555665553 22 34566677766554
No 478
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=52.97 E-value=12 Score=27.79 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|.+++.+
T Consensus 142 lAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~L~~l~---~~~g~tiiivtH~~~~~ 195 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAAL----------DDPRKYEILPYLERLH---AEFGIPILYVSHSLQEV 195 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 456677889999999963322 2223344444444432 22234466666665544
No 479
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=52.77 E-value=26 Score=24.15 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 155 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tvi~vsH~~~~~ 207 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGL----------DIDALKIVAEGINRLR---EP-DRSFLIITHYQRLL 207 (243)
T ss_pred HHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HC-CcEEEEEEecHHHH
Confidence 455667789999999963322 2223445555555442 22 33566666665554
No 480
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=52.67 E-value=30 Score=22.02 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=14.5
Q ss_pred HHHHhcCCeEEEecccccc
Q psy522 3 RVAEEHAPSIVFIDEIDAV 21 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l 21 (131)
.+|-...|.++++||-..=
T Consensus 82 aral~~~p~illlDEP~~~ 100 (144)
T cd03221 82 AKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred HHHHhcCCCEEEEeCCccC
Confidence 4566788999999996543
No 481
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.62 E-value=22 Score=25.24 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. ..+ ..+|.+|.+++.+
T Consensus 147 laraL~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~g-~tii~vtH~~~~~ 199 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGL----------DPAGRTQMIAIIRRIV---AQG-NHVIISSHDIDLI 199 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HCC-CEEEEEeCCHHHH
Confidence 456677889999999964322 2223445555555443 222 3466666665554
No 482
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.52 E-value=26 Score=25.00 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 148 laral~~~p~llllDEPt~gL----------D~~~~~~l~~~l~~l~---~~-~~til~vtH~~~~~ 200 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGL----------DPMGASQIMKLLYDLN---KE-GITIIISTHDVDLV 200 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 456677889999999964432 2223344555554442 22 34466666655554
No 483
>PRK09694 helicase Cas3; Provisional
Probab=52.49 E-value=38 Score=28.79 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.3
Q ss_pred hcCCeEEEecccccc
Q psy522 7 EHAPSIVFIDEIDAV 21 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l 21 (131)
..+-++|+|||++++
T Consensus 437 ~La~svvIiDEVHAy 451 (878)
T PRK09694 437 GLGRSVLIVDEVHAY 451 (878)
T ss_pred hhccCeEEEechhhC
Confidence 345689999999997
No 484
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=52.46 E-value=18 Score=24.12 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.6
Q ss_pred cCCeEEEeccccc
Q psy522 8 HAPSIVFIDEIDA 20 (131)
Q Consensus 8 ~~p~ii~iDe~d~ 20 (131)
..|+++++||.-.
T Consensus 77 ~~~~llllDEp~~ 89 (185)
T smart00534 77 TENSLVLLDELGR 89 (185)
T ss_pred CCCeEEEEecCCC
Confidence 3799999999744
No 485
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=52.38 E-value=12 Score=28.26 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=14.7
Q ss_pred HHHHHhcCCeEEEeccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~ 20 (131)
+.+|-...|.++++||--+
T Consensus 155 LARaL~~~P~llLLDEP~s 173 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLS 173 (375)
T ss_pred HHHHHhcCCCEEEEeCCCC
Confidence 4566778899999999644
No 486
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.38 E-value=25 Score=25.07 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--.=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 147 laral~~~p~lllLDEPt~gL----------D~~~~~~l~~~l~~l~---~~-g~til~~tH~~~~~ 199 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSML----------DPDSGIAVLERIKKLH---EK-GKTIVYITHNLEEL 199 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCHHHH
Confidence 456677889999999964322 2223344444444442 22 34566666666555
No 487
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.34 E-value=20 Score=25.01 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.=+ +......+..++..+. . + ..+|.+|.+++.+
T Consensus 157 laral~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~-~-~tiii~sH~~~~~ 208 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANL----------DPENTAKIESLFLELK---K-D-MTIVLVTHFPQQA 208 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEeCCHHHH
Confidence 345666789999999964322 2223345555555442 2 2 4566666665544
No 488
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=52.18 E-value=16 Score=30.63 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=40.1
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc-----ccccCCCccceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD-----PALIRPGRIDRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id-----~~l~~~grf~~~i 82 (131)
..|.++++||.-..+... .....+..++..+. +. +..+|.+|++++.+. .++.. ..+..+
T Consensus 651 ~~p~illlDE~~~~L~d~---------~~~~~i~~~lk~~R---K~-~~~vil~Tq~~~d~~~s~~a~~i~~--~~~t~i 715 (818)
T PRK13830 651 GAPSLIILDEAWLMLGHP---------VFRDKIREWLKVLR---KA-NCAVVLATQSISDAERSGIIDVLKE--SCPTKI 715 (818)
T ss_pred CCCcEEEEECchhhcCCH---------HHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHhcCchHHHHHh--cCCeEE
Confidence 579999999988776422 12344555554443 23 345677777766653 33444 567777
Q ss_pred EeCCCC
Q psy522 83 EFPLPD 88 (131)
Q Consensus 83 ~~~~P~ 88 (131)
.++.|.
T Consensus 716 ~L~n~~ 721 (818)
T PRK13830 716 CLPNGA 721 (818)
T ss_pred ECCCcc
Confidence 776664
No 489
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=51.81 E-value=38 Score=26.62 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.9
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
...|||||+|.+-
T Consensus 282 gGtL~ldeI~~L~ 294 (509)
T PRK05022 282 GGTLFLDEIGELP 294 (509)
T ss_pred CCEEEecChhhCC
Confidence 4679999999984
No 490
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=51.62 E-value=13 Score=27.88 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=28.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 67 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~ 67 (131)
+.+|-...|.++++||--+=+ +......+...+..+ ....++.+|.+|.+.+.
T Consensus 145 lARAL~~~P~llLLDEP~s~L----------D~~~r~~l~~~l~~l---~~~~g~tii~vTHd~~e 197 (356)
T PRK11650 145 MGRAIVREPAVFLFDEPLSNL----------DAKLRVQMRLEIQRL---HRRLKTTSLYVTHDQVE 197 (356)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHH
Confidence 356677889999999963322 222333333333333 22324456666666543
No 491
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=51.61 E-value=22 Score=25.35 Aligned_cols=53 Identities=17% Similarity=0.428 Sum_probs=29.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+..|-...|.++++||--.-+ .......+.+++..+. .. +..+|.+|.+.+.+
T Consensus 154 Laral~~~p~iLlLDEPt~gL----------D~~~~~~l~~~L~~~~---~~-g~tiIiisH~~~~i 206 (264)
T PRK13546 154 FSINITVNPDILVIDEALSVG----------DQTFAQKCLDKIYEFK---EQ-NKTIFFVSHNLGQV 206 (264)
T ss_pred HHHHHhhCCCEEEEeCccccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHHH
Confidence 355667789999999964432 2223344444554442 22 34566666665554
No 492
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.42 E-value=48 Score=24.23 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=37.0
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCcc----
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRI---- 78 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf---- 78 (131)
.+|-+..|-|++.||= |++-+ .-....+...+..+...+ ++.+|+.| +.+|+|+.-..|.
T Consensus 147 ~RALAadP~ilLMDEP---FgALD---pI~R~~lQ~e~~~lq~~l------~kTivfVT----HDidEA~kLadri~vm~ 210 (309)
T COG1125 147 ARALAADPPILLMDEP---FGALD---PITRKQLQEEIKELQKEL------GKTIVFVT----HDIDEALKLADRIAVMD 210 (309)
T ss_pred HHHHhcCCCeEeecCC---ccccC---hhhHHHHHHHHHHHHHHh------CCEEEEEe----cCHHHHHhhhceEEEec
Confidence 3567778999999984 32221 001111222223332222 34455555 5788888766664
Q ss_pred -ceEEEeCCCC
Q psy522 79 -DRKIEFPLPD 88 (131)
Q Consensus 79 -~~~i~~~~P~ 88 (131)
.+.+.+..|+
T Consensus 211 ~G~i~Q~~~P~ 221 (309)
T COG1125 211 AGEIVQYDTPD 221 (309)
T ss_pred CCeEEEeCCHH
Confidence 3556666654
No 493
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=51.42 E-value=11 Score=27.77 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--.-+ +......+..++..+ ....+..+|.+|.+...+
T Consensus 165 iArAL~~~P~lLilDEPts~L----------D~~~~~~i~~lL~~l---~~~~g~til~iTHdl~~~ 218 (327)
T PRK11308 165 IARALMLDPDVVVADEPVSAL----------DVSVQAQVLNLMMDL---QQELGLSYVFISHDLSVV 218 (327)
T ss_pred HHHHHHcCCCEEEEECCCccC----------CHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 356777889999999964433 222333444444333 222234566666655444
No 494
>PRK10908 cell division protein FtsE; Provisional
Probab=51.33 E-value=26 Score=23.90 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 148 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~ 200 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNL----------DDALSEGILRLFEEFN---RV-GVTVLMATHDIGLI 200 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345666789999999964332 2223344444444442 22 34566666665544
No 495
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=51.26 E-value=33 Score=25.52 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHhcCCeEEEecccccccCcCCCC---CCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDS---NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
++...+.+|++|-+-++++...-. ++.....-.+.+...+..+.......++.+|.|....+.+
T Consensus 129 i~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i 195 (325)
T cd00983 129 VRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKI 195 (325)
T ss_pred HhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 456789999999999998642111 1111111123344445444444455677788876644433
No 496
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=51.00 E-value=28 Score=24.35 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.-+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 148 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~ 200 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHL----------DVRAQLETLALVRELA---AT-GVTVVAALHDLNLA 200 (256)
T ss_pred HHHHHhcCCCEEEEcCccccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 345667789999999964432 2223345555555443 22 23566666666655
No 497
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=50.81 E-value=11 Score=31.50 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=46.4
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc-----ccccCCCccceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD-----PALIRPGRIDRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id-----~~l~~~grf~~~i 82 (131)
.+|.++++||+..+.... .....+..++..+. +.+ .+|+.+|.++..++ .+++- .....|
T Consensus 633 gr~~~i~iDE~w~~l~~~---------~f~~~i~~~lkt~R---K~N-g~vvfatQs~~d~~~s~iA~~~ie--~~~t~I 697 (796)
T COG3451 633 GRPFLIFIDEFWKLLDNP---------KFADFIRDWLKTLR---KLN-GVVVFATQSILDILKSRIADAIIE--QCPTKI 697 (796)
T ss_pred CCCeEEEeehhHHhcCCH---------HHHHHHHHHHHHHH---hhC-cEEEEecCCHHHHhcchhHHHHHH--hCCeEE
Confidence 679999999999887543 34455666666654 334 67778888766664 33333 567788
Q ss_pred EeCCCCHHHH
Q psy522 83 EFPLPDEKTK 92 (131)
Q Consensus 83 ~~~~P~~~~R 92 (131)
.+|.|....+
T Consensus 698 flpn~~~~~~ 707 (796)
T COG3451 698 FLPNPKAIEA 707 (796)
T ss_pred EccCccccch
Confidence 8888844443
No 498
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=50.79 E-value=39 Score=26.40 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++|| +...-+......+..++..+ ...+..||.+|.+.+.+
T Consensus 416 lA~al~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~l----~~~g~tvi~~sHd~~~~ 468 (506)
T PRK13549 416 LAKCLLLNPKILILDE----------PTRGIDVGAKYEIYKLINQL----VQQGVAIIVISSELPEV 468 (506)
T ss_pred HHHHHhhCCCEEEEcC----------CCCCcCHhHHHHHHHHHHHH----HHCCCEEEEECCCHHHH
No 499
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.71 E-value=24 Score=23.85 Aligned_cols=52 Identities=29% Similarity=0.315 Sum_probs=30.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--.- .+......+..++..+. . + ..+|.+|++++.+
T Consensus 141 la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~-~-~tii~vsH~~~~~ 192 (211)
T cd03264 141 IAQALVGDPSILIVDEPTAG----------LDPEERIRFRNLLSELG---E-D-RIVILSTHIVEDV 192 (211)
T ss_pred HHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHh---C-C-CEEEEEcCCHHHH
Confidence 35667788999999995332 22333455555555553 2 2 4566677665554
No 500
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.68 E-value=48 Score=23.64 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
.|.++++||...-+. ......+..++..+. . ...+|.+|+++.
T Consensus 192 ~p~vlllDEp~~~Ld----------~~~~~~l~~~l~~~~---~--~~tii~isH~~~ 234 (276)
T cd03241 192 AVPTLIFDEIDTGIS----------GEVAQAVGKKLKELS---R--SHQVLCITHLPQ 234 (276)
T ss_pred CCCEEEEECCccCCC----------HHHHHHHHHHHHHHh---C--CCEEEEEechHH
Confidence 899999999654332 222334444444332 2 235777777655
Done!