Query psy522
Match_columns 131
No_of_seqs 131 out of 1222
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:26:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.4E-36 4.7E-41 223.4 14.5 131 1-131 233-363 (405)
2 4b4t_I 26S protease regulatory 100.0 8.1E-36 2.8E-40 220.3 13.3 131 1-131 267-397 (437)
3 4b4t_L 26S protease subunit RP 100.0 4.1E-35 1.4E-39 218.0 13.8 131 1-131 266-396 (437)
4 4b4t_M 26S protease regulatory 100.0 2.4E-35 8.2E-40 219.1 12.1 131 1-131 266-396 (434)
5 4b4t_H 26S protease regulatory 100.0 9E-35 3.1E-39 216.4 14.6 131 1-131 294-424 (467)
6 4b4t_K 26S protease regulatory 100.0 2E-34 6.8E-39 214.0 12.3 131 1-131 257-388 (428)
7 3cf2_A TER ATPase, transitiona 100.0 5E-34 1.7E-38 224.5 4.9 131 1-131 562-692 (806)
8 3cf2_A TER ATPase, transitiona 100.0 3.3E-30 1.1E-34 202.9 11.5 128 1-131 289-416 (806)
9 3cf0_A Transitional endoplasmi 99.9 3.9E-26 1.3E-30 163.1 10.8 131 1-131 100-230 (301)
10 2ce7_A Cell division protein F 99.9 1E-25 3.4E-30 169.5 12.4 131 1-131 100-230 (476)
11 2x8a_A Nuclear valosin-contain 99.9 2E-25 7E-30 157.7 11.0 128 1-131 95-227 (274)
12 1lv7_A FTSH; alpha/beta domain 99.9 5.4E-24 1.9E-28 148.6 14.1 131 1-131 96-226 (257)
13 1xwi_A SKD1 protein; VPS4B, AA 99.9 4.1E-24 1.4E-28 154.0 12.6 126 1-131 97-224 (322)
14 3h4m_A Proteasome-activating n 99.9 1.2E-23 4E-28 148.6 13.7 131 1-131 102-232 (285)
15 1ixz_A ATP-dependent metallopr 99.9 2.5E-23 8.4E-28 145.0 12.2 131 1-131 100-230 (254)
16 2dhr_A FTSH; AAA+ protein, hex 99.9 1.3E-23 4.5E-28 158.8 11.0 130 2-131 116-245 (499)
17 3eie_A Vacuolar protein sortin 99.9 4.5E-23 1.6E-27 148.4 11.2 126 1-131 102-229 (322)
18 3hu3_A Transitional endoplasmi 99.9 9.8E-23 3.3E-27 153.9 12.9 128 1-131 289-416 (489)
19 1ypw_A Transitional endoplasmi 99.9 1.7E-25 5.8E-30 177.2 -3.4 131 1-131 562-692 (806)
20 2qp9_X Vacuolar protein sortin 99.9 7.9E-23 2.7E-27 149.1 10.8 126 1-131 135-262 (355)
21 2zan_A Vacuolar protein sortin 99.9 1.2E-22 4.1E-27 151.9 11.4 126 1-131 219-346 (444)
22 1iy2_A ATP-dependent metallopr 99.9 2.8E-22 9.5E-27 141.5 12.3 131 1-131 124-254 (278)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2E-22 6.9E-27 140.4 10.9 131 1-131 90-223 (262)
24 2r62_A Cell division protease 99.8 1.1E-22 3.6E-27 142.6 1.6 131 1-131 95-227 (268)
25 3d8b_A Fidgetin-like protein 1 99.8 5.4E-20 1.9E-24 134.1 10.8 126 1-131 168-296 (357)
26 3b9p_A CG5977-PA, isoform A; A 99.8 1.1E-19 3.7E-24 129.0 10.7 126 1-131 105-234 (297)
27 3vfd_A Spastin; ATPase, microt 99.8 5.3E-19 1.8E-23 130.1 12.3 126 1-131 199-327 (389)
28 3t15_A Ribulose bisphosphate c 99.8 5.3E-20 1.8E-24 131.0 4.6 120 2-128 88-222 (293)
29 1ypw_A Transitional endoplasmi 99.8 6.7E-18 2.3E-22 134.0 13.0 127 1-130 289-415 (806)
30 2c9o_A RUVB-like 1; hexameric 99.5 9.9E-18 3.4E-22 125.7 -11.2 120 2-130 116-260 (456)
31 3kw6_A 26S protease regulatory 99.3 1.1E-12 3.7E-17 75.9 4.8 47 85-131 1-47 (78)
32 2krk_A 26S protease regulatory 99.3 2.7E-12 9.1E-17 75.6 3.9 48 84-131 8-55 (86)
33 1d2n_A N-ethylmaleimide-sensit 99.2 2.7E-11 9.4E-16 84.8 6.8 119 2-130 117-242 (272)
34 3syl_A Protein CBBX; photosynt 99.2 4.6E-11 1.6E-15 84.7 6.1 114 8-130 129-255 (309)
35 3m6a_A ATP-dependent protease 99.1 2.9E-11 1E-15 92.4 2.4 85 2-100 169-266 (543)
36 3vlf_B 26S protease regulatory 99.1 1.1E-10 3.7E-15 68.9 3.8 44 88-131 2-45 (88)
37 3aji_B S6C, proteasome (prosom 99.0 1.9E-10 6.5E-15 67.1 4.0 44 88-131 2-45 (83)
38 3pfi_A Holliday junction ATP-d 99.0 2.4E-09 8.3E-14 76.8 8.4 108 8-129 105-226 (338)
39 1hqc_A RUVB; extended AAA-ATPa 99.0 4.3E-09 1.5E-13 74.9 9.4 109 8-130 89-211 (324)
40 1njg_A DNA polymerase III subu 98.9 6.3E-09 2.2E-13 70.3 9.3 103 8-130 125-228 (250)
41 2z4s_A Chromosomal replication 98.9 1.4E-09 4.9E-14 81.1 6.3 107 9-130 194-306 (440)
42 1ofh_A ATP-dependent HSL prote 98.9 4E-09 1.4E-13 74.5 8.0 86 9-98 116-213 (310)
43 3uk6_A RUVB-like 2; hexameric 98.9 2.5E-09 8.6E-14 77.4 7.0 102 10-130 190-303 (368)
44 1l8q_A Chromosomal replication 98.8 1.1E-08 3.9E-13 73.0 7.0 104 9-129 98-207 (324)
45 2chg_A Replication factor C sm 98.8 2.3E-08 7.7E-13 66.8 8.1 99 8-126 101-200 (226)
46 1r6b_X CLPA protein; AAA+, N-t 98.8 3.6E-09 1.2E-13 83.5 4.6 89 2-102 271-364 (758)
47 1g41_A Heat shock protein HSLU 98.7 4.1E-10 1.4E-14 84.1 -2.2 74 15-96 113-188 (444)
48 3bos_A Putative DNA replicatio 98.7 7.9E-09 2.7E-13 70.2 4.4 107 8-129 103-216 (242)
49 2v1u_A Cell division control p 98.7 2.4E-08 8.1E-13 72.3 7.0 99 9-119 130-236 (387)
50 1jbk_A CLPB protein; beta barr 98.7 5.7E-09 1.9E-13 68.3 3.3 78 6-96 112-194 (195)
51 2dzn_B 26S protease regulatory 98.7 7.3E-10 2.5E-14 64.5 -1.4 42 90-131 1-42 (82)
52 4fcw_A Chaperone protein CLPB; 98.7 1.4E-08 4.6E-13 71.9 4.7 112 6-130 116-271 (311)
53 1qvr_A CLPB protein; coiled co 98.6 1.4E-08 4.7E-13 81.3 3.4 87 2-101 255-346 (854)
54 3hws_A ATP-dependent CLP prote 98.6 9.6E-08 3.3E-12 69.4 7.6 91 6-98 113-267 (363)
55 3pxg_A Negative regulator of g 98.6 8.2E-08 2.8E-12 72.2 6.3 97 1-122 259-365 (468)
56 3pxi_A Negative regulator of g 98.6 1.1E-07 3.8E-12 75.1 6.5 78 1-103 259-341 (758)
57 1jr3_A DNA polymerase III subu 98.5 5.9E-07 2E-11 64.9 9.4 101 9-129 119-220 (373)
58 1sxj_E Activator 1 40 kDa subu 98.5 6.2E-07 2.1E-11 64.5 8.7 100 8-127 133-234 (354)
59 2qby_B CDC6 homolog 3, cell di 98.5 1.3E-07 4.5E-12 68.6 5.2 90 11-119 135-232 (384)
60 2chq_A Replication factor C sm 98.5 6.8E-07 2.3E-11 63.1 8.4 94 8-120 101-195 (319)
61 3pxi_A Negative regulator of g 98.4 4.4E-07 1.5E-11 71.8 7.3 88 2-102 572-677 (758)
62 2qby_A CDC6 homolog 1, cell di 98.4 2.9E-07 9.8E-12 66.5 5.4 96 10-119 129-232 (386)
63 1a5t_A Delta prime, HOLB; zinc 98.4 3.6E-06 1.2E-10 60.5 10.9 95 9-127 108-202 (334)
64 1sxj_B Activator 1 37 kDa subu 98.4 7.5E-07 2.6E-11 63.0 7.0 95 9-122 107-202 (323)
65 2p65_A Hypothetical protein PF 98.4 6.4E-08 2.2E-12 63.1 1.0 68 9-88 115-187 (187)
66 1r6b_X CLPA protein; AAA+, N-t 98.4 5.7E-07 1.9E-11 71.0 6.4 112 3-130 551-708 (758)
67 1iqp_A RFCS; clamp loader, ext 98.4 1.9E-06 6.4E-11 61.0 8.6 94 8-120 109-203 (327)
68 1sxj_D Activator 1 41 kDa subu 98.4 2.3E-06 8E-11 61.3 8.9 94 9-121 133-227 (353)
69 3te6_A Regulatory protein SIR3 98.4 1.2E-06 4.1E-11 62.9 7.2 79 7-102 130-213 (318)
70 2r44_A Uncharacterized protein 98.3 1.1E-06 3.9E-11 62.8 6.9 79 11-102 111-200 (331)
71 1g8p_A Magnesium-chelatase 38 98.3 3.1E-06 1.1E-10 60.6 9.0 76 10-98 145-230 (350)
72 3u61_B DNA polymerase accessor 98.3 1.6E-06 5.5E-11 61.7 7.3 95 9-121 105-208 (324)
73 3pvs_A Replication-associated 98.3 1.3E-06 4.5E-11 65.3 6.6 92 8-120 105-206 (447)
74 1fnn_A CDC6P, cell division co 98.3 1.6E-06 5.3E-11 62.8 6.6 95 8-118 124-227 (389)
75 1sxj_A Activator 1 95 kDa subu 98.3 3.3E-06 1.1E-10 64.2 8.0 96 8-120 147-243 (516)
76 2c9o_A RUVB-like 1; hexameric 98.2 4.1E-06 1.4E-10 62.7 6.6 90 10-118 296-398 (456)
77 1in4_A RUVB, holliday junction 98.2 1.2E-05 4.2E-10 57.7 8.7 72 55-129 150-222 (334)
78 1qvr_A CLPB protein; coiled co 98.1 2.5E-06 8.6E-11 68.3 5.5 110 5-130 656-812 (854)
79 3f9v_A Minichromosome maintena 98.1 6.4E-06 2.2E-10 63.7 6.5 80 10-103 392-493 (595)
80 1um8_A ATP-dependent CLP prote 98.0 1.3E-05 4.4E-10 58.3 6.7 28 68-97 256-283 (376)
81 4akg_A Glutathione S-transfera 98.0 1.9E-05 6.5E-10 69.6 7.7 85 9-102 1336-1433(2695)
82 3nbx_X ATPase RAVA; AAA+ ATPas 97.9 1.5E-05 5.1E-10 60.5 6.2 76 9-100 109-196 (500)
83 1sxj_C Activator 1 40 kDa subu 97.9 6.2E-05 2.1E-09 54.0 8.6 92 10-120 111-203 (340)
84 1w5s_A Origin recognition comp 97.7 8.3E-05 2.8E-09 54.1 7.0 102 8-119 137-250 (412)
85 2gno_A DNA polymerase III, gam 97.7 6.1E-05 2.1E-09 53.7 5.6 70 10-100 83-152 (305)
86 1g41_A Heat shock protein HSLU 97.7 0.00051 1.7E-08 51.4 10.1 84 10-97 251-346 (444)
87 2r2a_A Uncharacterized protein 97.2 0.0013 4.4E-08 44.0 6.5 72 9-92 87-158 (199)
88 2qen_A Walker-type ATPase; unk 97.2 0.013 4.4E-07 41.3 12.2 105 8-122 127-239 (350)
89 2fna_A Conserved hypothetical 97.1 0.0048 1.6E-07 43.7 9.6 100 9-122 137-243 (357)
90 1ojl_A Transcriptional regulat 96.9 0.0012 4.3E-08 46.7 5.0 79 10-101 97-191 (304)
91 3cmw_A Protein RECA, recombina 96.9 0.00043 1.5E-08 59.1 2.8 69 1-69 1152-1223(1706)
92 2bjv_A PSP operon transcriptio 96.6 0.0019 6.5E-08 44.5 4.0 80 9-101 100-195 (265)
93 3k1j_A LON protease, ATP-depen 96.6 0.0042 1.4E-07 48.0 6.3 74 55-130 252-348 (604)
94 1jr3_D DNA polymerase III, del 95.8 0.037 1.3E-06 39.4 7.4 93 10-120 77-176 (343)
95 3co5_A Putative two-component 95.3 0.04 1.4E-06 34.3 5.3 61 9-86 75-141 (143)
96 3vkg_A Dynein heavy chain, cyt 94.8 0.095 3.3E-06 47.7 7.9 84 10-101 1375-1470(3245)
97 3f8t_A Predicted ATPase involv 94.5 0.036 1.2E-06 42.0 4.0 68 11-91 302-385 (506)
98 2vhj_A Ntpase P4, P4; non- hyd 94.0 0.013 4.3E-07 42.2 0.7 58 12-72 185-242 (331)
99 4ag6_A VIRB4 ATPase, type IV s 93.7 0.33 1.1E-05 35.2 7.8 76 8-97 261-344 (392)
100 2kjq_A DNAA-related protein; s 93.7 0.028 9.6E-07 35.5 1.8 61 9-85 83-146 (149)
101 2iut_A DNA translocase FTSK; n 92.9 0.14 4.7E-06 39.6 4.7 75 10-97 344-420 (574)
102 1svm_A Large T antigen; AAA+ f 92.7 0.052 1.8E-06 39.7 2.1 69 8-86 215-284 (377)
103 3n70_A Transport activator; si 92.2 0.18 6.2E-06 31.3 4.0 40 9-64 76-115 (145)
104 3cmu_A Protein RECA, recombina 92.1 0.11 3.6E-06 45.6 3.5 65 2-66 1498-1565(2050)
105 4akg_A Glutathione S-transfera 91.8 0.43 1.5E-05 43.1 6.9 86 2-98 691-791 (2695)
106 1ny5_A Transcriptional regulat 89.0 0.97 3.3E-05 32.9 5.9 78 10-101 232-326 (387)
107 3ec2_A DNA replication protein 88.8 0.19 6.6E-06 32.1 1.9 14 8-21 99-112 (180)
108 1ye8_A Protein THEP1, hypothet 88.5 3.3 0.00011 26.6 7.7 15 6-20 96-110 (178)
109 3dzd_A Transcriptional regulat 88.1 1.2 4.1E-05 32.2 5.8 77 11-101 224-317 (368)
110 1z6t_A APAF-1, apoptotic prote 87.9 3.5 0.00012 31.3 8.6 86 8-122 235-321 (591)
111 2ius_A DNA translocase FTSK; n 87.2 0.43 1.5E-05 36.3 3.1 77 9-98 296-375 (512)
112 1e9r_A Conjugal transfer prote 82.8 3.3 0.00011 30.2 6.1 71 8-97 278-358 (437)
113 3sfz_A APAF-1, apoptotic pepti 79.8 15 0.00053 30.1 9.5 85 8-121 235-320 (1249)
114 3cmu_A Protein RECA, recombina 78.1 2 7E-05 38.0 4.0 62 8-69 809-873 (2050)
115 2ixe_A Antigen peptide transpo 78.0 3.5 0.00012 28.4 4.6 54 2-68 167-220 (271)
116 2ghi_A Transport protein; mult 77.9 12 0.00041 25.5 7.3 52 2-68 166-217 (260)
117 2pjz_A Hypothetical protein ST 77.3 8.1 0.00028 26.5 6.3 50 2-68 139-188 (263)
118 1g6h_A High-affinity branched- 76.6 8.2 0.00028 26.2 6.1 53 2-68 164-216 (257)
119 2ff7_A Alpha-hemolysin translo 76.1 15 0.00052 24.7 7.4 52 2-68 156-207 (247)
120 2yz2_A Putative ABC transporte 75.2 8.8 0.0003 26.2 6.0 53 2-68 149-201 (266)
121 2cbz_A Multidrug resistance-as 75.1 11 0.00039 25.2 6.4 17 2-18 138-154 (237)
122 2d2e_A SUFC protein; ABC-ATPas 74.6 8.2 0.00028 26.1 5.7 53 2-68 154-206 (250)
123 3eod_A Protein HNR; response r 73.9 4.6 0.00016 23.5 3.9 48 54-103 80-127 (130)
124 2pcj_A ABC transporter, lipopr 72.5 9.2 0.00032 25.4 5.5 51 2-66 151-201 (224)
125 2zu0_C Probable ATP-dependent 71.5 7.8 0.00027 26.6 5.0 53 2-68 175-227 (267)
126 4g1u_C Hemin import ATP-bindin 71.5 6.2 0.00021 27.1 4.5 47 9-68 165-211 (266)
127 2nq2_C Hypothetical ABC transp 70.2 7.4 0.00025 26.5 4.6 54 2-68 139-192 (253)
128 2olj_A Amino acid ABC transpor 68.3 8.3 0.00028 26.4 4.6 53 2-68 170-222 (263)
129 1n0w_A DNA repair protein RAD5 67.7 5.2 0.00018 26.3 3.4 20 5-24 115-134 (243)
130 3gfo_A Cobalt import ATP-bindi 67.7 8.3 0.00028 26.7 4.5 54 2-68 154-207 (275)
131 1b0u_A Histidine permease; ABC 67.2 7.3 0.00025 26.6 4.1 53 2-68 164-216 (262)
132 3plx_B Aspartate 1-decarboxyla 67.1 4.1 0.00014 24.0 2.4 21 3-23 71-91 (102)
133 3tif_A Uncharacterized ABC tra 66.6 6.1 0.00021 26.5 3.6 52 2-66 156-207 (235)
134 2a5y_B CED-4; apoptosis; HET: 65.9 40 0.0014 25.4 8.3 85 9-121 243-329 (549)
135 1sgw_A Putative ABC transporte 65.6 2.5 8.7E-05 28.1 1.5 18 3-20 145-162 (214)
136 1vpl_A ABC transporter, ATP-bi 64.7 18 0.00062 24.6 5.7 53 2-68 157-209 (256)
137 2w0m_A SSO2452; RECA, SSPF, un 64.3 2.8 9.5E-05 27.3 1.5 18 5-22 117-136 (235)
138 1xp8_A RECA protein, recombina 63.3 8.3 0.00028 27.9 3.9 18 6-23 149-166 (366)
139 3vkg_A Dynein heavy chain, cyt 61.0 32 0.0011 32.4 7.7 42 54-98 706-751 (3245)
140 1ji0_A ABC transporter; ATP bi 60.4 21 0.0007 23.9 5.3 52 2-67 150-201 (240)
141 3tui_C Methionine import ATP-b 59.0 8.6 0.00029 27.9 3.4 52 3-67 175-226 (366)
142 2zr9_A Protein RECA, recombina 58.1 2.3 7.7E-05 30.6 0.2 18 6-23 136-153 (349)
143 4aby_A DNA repair protein RECN 58.0 11 0.00036 27.2 3.7 48 5-67 309-358 (415)
144 1vec_A ATP-dependent RNA helic 57.3 7.4 0.00025 24.8 2.6 14 10-23 147-160 (206)
145 2cvh_A DNA repair and recombin 56.2 4.2 0.00014 26.3 1.2 16 9-24 105-120 (220)
146 3b85_A Phosphate starvation-in 54.3 9.6 0.00033 25.1 2.8 17 3-19 116-132 (208)
147 2i3b_A HCR-ntpase, human cance 54.1 26 0.0009 22.5 4.9 16 6-21 102-117 (189)
148 3nh6_A ATP-binding cassette SU 53.6 32 0.0011 24.1 5.5 17 2-18 201-217 (306)
149 1t6n_A Probable ATP-dependent 53.5 13 0.00046 23.9 3.4 14 10-23 159-172 (220)
150 1f2t_B RAD50 ABC-ATPase; DNA d 53.3 19 0.00066 22.3 3.9 14 5-18 77-90 (148)
151 2ehv_A Hypothetical protein PH 53.0 16 0.00054 23.9 3.8 55 5-68 131-185 (251)
152 2onk_A Molybdate/tungstate ABC 51.9 5.6 0.00019 26.9 1.3 17 2-18 137-153 (240)
153 1z47_A CYSA, putative ABC-tran 51.9 13 0.00045 26.8 3.3 17 2-18 156-172 (355)
154 2c45_A Aspartate 1-decarboxyla 51.6 8.3 0.00028 24.0 1.9 21 3-23 96-116 (139)
155 1cr0_A DNA primase/helicase; R 51.4 4.1 0.00014 28.0 0.6 18 5-22 143-160 (296)
156 3d31_A Sulfate/molybdate ABC t 51.2 14 0.00048 26.5 3.4 16 3-18 139-154 (348)
157 2z43_A DNA repair and recombin 50.6 4 0.00014 28.7 0.5 20 5-24 198-218 (324)
158 3dkp_A Probable ATP-dependent 50.4 3.6 0.00012 27.3 0.2 14 10-23 176-189 (245)
159 1wrb_A DJVLGB; RNA helicase, D 50.4 3.6 0.00012 27.5 0.2 13 11-23 176-188 (253)
160 3b60_A Lipid A export ATP-bind 50.3 63 0.0021 24.6 7.1 18 3-20 492-509 (582)
161 3iuy_A Probable ATP-dependent 49.9 11 0.00037 24.6 2.5 14 10-23 168-181 (228)
162 3cz5_A Two-component response 49.5 38 0.0013 20.0 5.4 97 3-118 45-141 (153)
163 3hr8_A Protein RECA; alpha and 48.6 22 0.00075 25.6 4.1 18 6-23 136-153 (356)
164 1g29_1 MALK, maltose transport 48.3 14 0.0005 26.7 3.1 17 2-18 150-166 (372)
165 3fvq_A Fe(3+) IONS import ATP- 48.1 22 0.00076 25.6 4.0 17 2-18 149-165 (359)
166 1qde_A EIF4A, translation init 47.9 7.7 0.00026 25.2 1.5 14 10-23 156-169 (224)
167 2ihy_A ABC transporter, ATP-bi 47.8 15 0.00052 25.3 3.1 17 2-18 172-188 (279)
168 1q0u_A Bstdead; DEAD protein, 47.4 10 0.00035 24.6 2.0 14 10-23 151-164 (219)
169 3qf4_B Uncharacterized ABC tra 47.2 72 0.0025 24.5 7.0 51 3-68 503-553 (598)
170 2yyz_A Sugar ABC transporter, 47.1 15 0.00051 26.5 3.0 17 2-18 144-160 (359)
171 3qkt_A DNA double-strand break 46.9 38 0.0013 23.8 5.1 14 7-20 270-283 (339)
172 2gxq_A Heat resistant RNA depe 46.7 8.1 0.00028 24.6 1.5 14 10-23 145-158 (207)
173 2r6a_A DNAB helicase, replicat 45.9 6.7 0.00023 29.0 1.0 18 7-24 311-328 (454)
174 1v43_A Sugar-binding transport 45.9 16 0.00054 26.5 3.0 17 2-18 152-168 (372)
175 2oxc_A Probable ATP-dependent 45.8 8.7 0.0003 25.2 1.5 14 10-23 167-180 (230)
176 3rlf_A Maltose/maltodextrin im 45.6 17 0.00057 26.5 3.1 17 2-18 144-160 (381)
177 4a82_A Cystic fibrosis transme 45.3 93 0.0032 23.7 7.3 16 3-18 489-504 (578)
178 2qi9_C Vitamin B12 import ATP- 44.9 24 0.00084 23.8 3.7 52 3-68 138-196 (249)
179 3fe2_A Probable ATP-dependent 44.9 13 0.00043 24.6 2.2 14 10-23 177-190 (242)
180 1tmy_A CHEY protein, TMY; chem 43.5 42 0.0014 18.7 4.5 15 3-17 41-55 (120)
181 3b5x_A Lipid A export ATP-bind 43.4 59 0.002 24.8 6.0 16 3-18 492-507 (582)
182 2pl3_A Probable ATP-dependent 43.1 14 0.00048 24.2 2.2 14 10-23 172-185 (236)
183 3lda_A DNA repair protein RAD5 43.0 14 0.00048 27.0 2.3 21 5-25 269-289 (400)
184 4a74_A DNA repair and recombin 42.5 4.8 0.00016 26.2 -0.2 17 7-23 123-139 (231)
185 3kht_A Response regulator; PSI 42.4 49 0.0017 19.2 5.5 15 3-17 45-59 (144)
186 1pzn_A RAD51, DNA repair and r 41.9 13 0.00043 26.6 1.9 16 8-23 230-245 (349)
187 3ber_A Probable ATP-dependent 41.8 13 0.00046 24.8 2.0 14 10-23 187-200 (249)
188 3nau_A Zinc fingers and homeob 41.8 32 0.0011 18.4 3.1 40 87-128 11-50 (66)
189 3fmo_B ATP-dependent RNA helic 41.5 18 0.0006 25.1 2.6 14 10-23 236-249 (300)
190 2i1q_A DNA repair and recombin 41.4 7.9 0.00027 27.0 0.8 55 8-63 203-257 (322)
191 2w58_A DNAI, primosome compone 41.2 18 0.00061 23.0 2.5 13 10-22 116-128 (202)
192 3bor_A Human initiation factor 41.2 8.5 0.00029 25.4 0.9 14 10-23 174-187 (237)
193 3snk_A Response regulator CHEY 41.1 31 0.0011 19.9 3.4 45 54-101 88-132 (135)
194 1g6u_A Domain swapped dimer; d 41.0 20 0.0007 17.1 2.0 14 116-129 12-25 (48)
195 3qf4_A ABC transporter, ATP-bi 40.9 79 0.0027 24.2 6.3 16 3-18 491-506 (587)
196 2hg7_A Phage-like element PBSX 40.7 16 0.00056 21.2 1.9 38 80-117 34-71 (110)
197 3n53_A Response regulator rece 40.7 52 0.0018 19.0 8.4 80 3-101 40-121 (140)
198 1tue_A Replication protein E1; 40.7 18 0.00063 24.2 2.4 9 11-19 105-113 (212)
199 3ozx_A RNAse L inhibitor; ATP 40.2 33 0.0011 26.1 4.1 17 2-18 396-412 (538)
200 1w1w_A Structural maintenance 39.9 29 0.00099 25.3 3.6 15 8-22 354-368 (430)
201 3hdg_A Uncharacterized protein 39.6 49 0.0017 19.0 4.2 15 3-17 45-59 (137)
202 1u94_A RECA protein, recombina 39.5 11 0.00037 27.1 1.3 18 6-23 138-155 (356)
203 3kta_B Chromosome segregation 39.2 23 0.00079 22.6 2.7 15 9-23 86-100 (173)
204 1v5w_A DMC1, meiotic recombina 38.7 8 0.00027 27.5 0.5 17 8-24 218-234 (343)
205 3auy_A DNA double-strand break 38.5 37 0.0013 24.2 4.0 16 7-22 302-318 (371)
206 1yqt_A RNAse L inhibitor; ATP- 37.5 75 0.0026 24.1 5.7 53 2-68 169-221 (538)
207 3lte_A Response regulator; str 37.4 57 0.0019 18.5 6.9 81 3-103 44-126 (132)
208 2j0s_A ATP-dependent RNA helic 37.0 29 0.00099 24.6 3.2 14 10-23 180-193 (410)
209 1e69_A Chromosome segregation 36.9 51 0.0018 22.9 4.4 15 8-22 240-254 (322)
210 3lhp_S 4E10_D0_1ISEA_004_N (T9 35.9 7.9 0.00027 23.6 0.1 22 78-99 34-55 (123)
211 2yl4_A ATP-binding cassette SU 35.9 68 0.0023 24.5 5.3 51 3-68 495-545 (595)
212 3ubt_Y Modification methylase 35.8 62 0.0021 22.4 4.8 24 2-25 95-118 (331)
213 3io5_A Recombination and repai 35.7 17 0.00057 26.1 1.7 19 6-24 108-126 (333)
214 2ys9_A Homeobox and leucine zi 35.4 55 0.0019 17.8 3.5 32 95-127 20-51 (70)
215 4ad8_A DNA repair protein RECN 35.2 37 0.0013 25.5 3.6 50 4-68 410-461 (517)
216 1wqg_A Ribosome recycling fact 35.0 37 0.0013 22.1 3.2 20 80-99 98-117 (185)
217 1ise_A Ribosome recycling fact 34.4 38 0.0013 22.1 3.2 20 80-99 98-117 (185)
218 1is1_A Ribosome recycling fact 34.4 38 0.0013 22.1 3.2 20 80-99 98-117 (185)
219 1dd5_A Ribosome recycling fact 34.3 39 0.0013 22.1 3.2 20 80-99 98-117 (185)
220 1ge9_A Ribosome recycling fact 34.2 39 0.0013 22.0 3.2 20 80-99 100-119 (184)
221 2qxy_A Response regulator; reg 34.0 69 0.0023 18.4 4.6 82 3-104 42-123 (142)
222 3i5x_A ATP-dependent RNA helic 33.5 58 0.002 24.3 4.5 14 10-23 227-240 (563)
223 3eiq_A Eukaryotic initiation f 33.3 23 0.0008 25.0 2.2 13 10-22 184-196 (414)
224 1oxx_K GLCV, glucose, ABC tran 32.6 11 0.00036 27.2 0.3 17 2-18 151-167 (353)
225 3cfy_A Putative LUXO repressor 32.6 74 0.0025 18.3 4.7 15 3-17 42-56 (137)
226 3llm_A ATP-dependent RNA helic 32.5 26 0.00088 23.0 2.2 12 9-20 176-187 (235)
227 1hv8_A Putative ATP-dependent 32.4 27 0.00093 24.1 2.4 14 10-23 148-161 (367)
228 3bk7_A ABC transporter ATP-bin 32.4 99 0.0034 23.9 5.7 53 2-68 239-291 (607)
229 2qr3_A Two-component system re 32.3 72 0.0025 18.2 4.8 47 54-103 81-127 (140)
230 1uzc_A Hypothetical protein FL 31.9 64 0.0022 17.4 3.6 33 85-117 10-42 (71)
231 3bh0_A DNAB-like replicative h 31.8 24 0.00081 24.6 2.0 17 7-23 177-195 (315)
232 3qf7_A RAD50; ABC-ATPase, ATPa 31.8 70 0.0024 22.8 4.5 11 8-18 302-312 (365)
233 3grc_A Sensor protein, kinase; 31.8 75 0.0026 18.2 4.4 16 2-17 43-58 (140)
234 3b6e_A Interferon-induced heli 31.6 20 0.00067 22.8 1.4 14 9-22 162-175 (216)
235 3ly5_A ATP-dependent RNA helic 31.2 16 0.00055 24.6 1.0 14 10-23 202-215 (262)
236 4e7p_A Response regulator; DNA 31.2 82 0.0028 18.4 6.5 82 3-103 60-141 (150)
237 3ozx_A RNAse L inhibitor; ATP 31.1 1.5E+02 0.0051 22.5 6.4 51 3-68 150-200 (538)
238 3bk7_A ABC transporter ATP-bin 31.0 54 0.0018 25.4 4.0 54 2-68 482-535 (607)
239 3sqw_A ATP-dependent RNA helic 30.9 68 0.0023 24.2 4.5 15 9-23 175-189 (579)
240 2it1_A 362AA long hypothetical 30.7 11 0.00038 27.2 0.1 17 2-18 144-160 (362)
241 3eul_A Possible nitrate/nitrit 29.8 87 0.003 18.3 5.4 83 3-104 55-137 (152)
242 3hzh_A Chemotaxis response reg 29.8 90 0.0031 18.5 5.7 45 54-101 112-156 (157)
243 4gfq_A Ribosome-recycling fact 29.5 45 0.0015 22.2 2.9 20 80-99 122-141 (209)
244 1j2m_A CPI-17, 17-kDa PKC-pote 29.2 52 0.0018 19.2 2.8 38 84-121 60-97 (99)
245 3cmw_A Protein RECA, recombina 28.9 17 0.00057 31.9 0.9 66 3-68 1503-1571(1706)
246 1rfy_A TRAM protein;, transcri 28.8 30 0.001 20.2 1.7 26 105-130 8-33 (102)
247 2pl1_A Transcriptional regulat 28.6 79 0.0027 17.4 5.4 15 3-17 38-52 (121)
248 1xti_A Probable ATP-dependent 27.8 54 0.0018 22.8 3.4 15 9-23 152-166 (391)
249 1nlf_A Regulatory protein REPA 27.8 23 0.00077 24.0 1.3 16 8-23 132-147 (279)
250 2hjd_A Quorum-sensing antiacti 27.6 29 0.001 20.3 1.5 26 105-130 8-33 (102)
251 2juc_A PRE-mRNA-splicing facto 27.4 58 0.002 17.0 2.5 19 83-101 40-58 (59)
252 2dr3_A UPF0273 protein PH0284; 27.4 1.1E+02 0.0037 19.7 4.6 18 5-22 124-141 (247)
253 2p6r_A Afuhel308 helicase; pro 27.3 53 0.0018 25.5 3.4 14 10-23 139-152 (702)
254 2dod_A Transcription elongatio 27.2 77 0.0026 17.6 3.2 32 85-116 12-43 (82)
255 3pey_A ATP-dependent RNA helic 27.0 36 0.0012 23.7 2.3 23 81-103 219-241 (395)
256 2orw_A Thymidine kinase; TMTK, 26.7 90 0.0031 19.7 4.0 13 9-21 76-88 (184)
257 1eh1_A Ribosome recycling fact 26.7 38 0.0013 22.1 2.1 20 80-99 99-118 (185)
258 3fmp_B ATP-dependent RNA helic 26.6 54 0.0018 23.9 3.2 14 10-23 236-249 (479)
259 2q6t_A DNAB replication FORK h 26.6 17 0.00059 26.7 0.5 18 6-23 307-324 (444)
260 1s2m_A Putative ATP-dependent 25.8 52 0.0018 23.1 3.0 14 10-23 164-177 (400)
261 3hfh_A Transcription elongatio 25.6 28 0.00097 22.5 1.4 31 87-117 2-32 (190)
262 1mvo_A PHOP response regulator 25.6 98 0.0033 17.5 6.3 47 54-103 76-122 (136)
263 1q57_A DNA primase/helicase; d 25.6 30 0.001 25.8 1.7 18 6-23 351-368 (503)
264 2pze_A Cystic fibrosis transme 25.5 39 0.0013 22.3 2.1 18 2-19 141-158 (229)
265 1wp9_A ATP-dependent RNA helic 24.7 80 0.0028 22.4 3.8 15 9-23 125-139 (494)
266 3fht_A ATP-dependent RNA helic 24.6 43 0.0015 23.5 2.4 14 10-23 169-182 (412)
267 3szy_A Phosphonoacetate hydrol 24.1 83 0.0028 23.1 3.8 20 6-25 201-220 (427)
268 1rif_A DAR protein, DNA helica 24.1 51 0.0017 22.2 2.5 12 11-22 227-238 (282)
269 1mv5_A LMRA, multidrug resista 23.7 38 0.0013 22.6 1.8 19 2-20 150-168 (243)
270 3lap_A Arginine repressor; arg 23.7 96 0.0033 19.8 3.6 32 86-117 15-47 (170)
271 2db3_A ATP-dependent RNA helic 23.6 64 0.0022 23.3 3.2 14 10-23 204-217 (434)
272 3j16_B RLI1P; ribosome recycli 23.1 1.1E+02 0.0039 23.6 4.5 53 3-69 233-285 (608)
273 2iw3_A Elongation factor 3A; a 22.2 1.4E+02 0.0049 24.7 5.1 51 2-69 559-609 (986)
274 3ux8_A Excinuclease ABC, A sub 22.1 1.6E+02 0.0055 22.8 5.2 51 3-67 214-266 (670)
275 2o0j_A Terminase, DNA packagin 22.0 1.8E+02 0.0062 21.0 5.2 18 4-21 268-285 (385)
276 3lua_A Response regulator rece 21.5 1.2E+02 0.0042 17.2 4.3 48 54-104 82-129 (140)
277 3ff5_A PEX14P, peroxisomal bio 21.3 79 0.0027 16.2 2.3 43 88-130 5-51 (54)
278 2lqt_A Coiled-coil-helix-coile 21.2 77 0.0026 17.9 2.4 19 82-100 63-81 (85)
279 2o71_A Death domain-containing 21.2 1.3E+02 0.0044 17.7 3.6 41 80-129 15-55 (115)
280 1srr_A SPO0F, sporulation resp 21.2 1.2E+02 0.004 16.8 4.7 44 55-101 77-120 (124)
281 2xau_A PRE-mRNA-splicing facto 21.0 42 0.0014 26.7 1.8 13 8-20 207-219 (773)
282 2i4i_A ATP-dependent RNA helic 20.9 47 0.0016 23.5 1.9 13 11-23 177-189 (417)
283 1fuu_A Yeast initiation factor 20.2 32 0.0011 24.1 0.9 15 9-23 162-176 (394)
284 2rjn_A Response regulator rece 20.2 1.4E+02 0.0048 17.3 4.3 15 3-17 45-59 (154)
285 2xgu_A Relik capsid N-terminal 20.1 55 0.0019 20.6 1.8 35 95-130 21-56 (149)
286 2qgz_A Helicase loader, putati 20.1 7.2 0.00025 27.3 -2.5 13 9-21 214-226 (308)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=223.43 Aligned_cols=131 Identities=55% Similarity=0.985 Sum_probs=123.2
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++||||||||+|++++++...+.........+++++|+.||++...++|+||||||+|+.||+|++||||||+
T Consensus 233 lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~ 312 (405)
T 4b4t_J 233 LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDR 312 (405)
T ss_dssp HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCC
T ss_pred HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCce
Confidence 59999999999999999999999987666666667778999999999999888999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++++|+.++|.+||+.++++.++..++|+..+|..|+||||+||+.+|+
T Consensus 313 ~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 313 KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999888999999999999999999999984
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-36 Score=220.27 Aligned_cols=131 Identities=80% Similarity=1.202 Sum_probs=122.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|++++||||||||+|+++.+|...+...+.....++.++|+.++++...++|+||+|||+|+.||+|++||||||+
T Consensus 267 lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~ 346 (437)
T 4b4t_I 267 IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDR 346 (437)
T ss_dssp HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEE
T ss_pred HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeE
Confidence 58999999999999999999999997666666666778999999999999888999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++++|+.++|.+||+.++++..+..++|+..+|..|+||||+||+.+|+
T Consensus 347 ~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 347 KILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp EECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999888999999999999999999999984
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-35 Score=218.01 Aligned_cols=131 Identities=49% Similarity=0.913 Sum_probs=122.6
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|+.++||||||||+|+++.+|...+.........+++++|..|+++...++|+||+|||+|+.||+|++||||||+
T Consensus 266 ~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~ 345 (437)
T 4b4t_L 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDR 345 (437)
T ss_dssp HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEE
T ss_pred HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccce
Confidence 48999999999999999999999987666666666778899999999999888999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++++|+.++|.+||+.++++.....++|+..+|..|+||||+||+.+|+
T Consensus 346 ~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 346 KVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp EECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred eeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999998888999999999999999999999984
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=219.13 Aligned_cols=131 Identities=58% Similarity=0.990 Sum_probs=122.1
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|++++||||||||+|+++.+|...+.........++..+|+.|+++...++|+||||||+|+.||+|++||||||+
T Consensus 266 lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~ 345 (434)
T 4b4t_M 266 AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDR 345 (434)
T ss_dssp HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEE
T ss_pred HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeE
Confidence 58999999999999999999999986655555556778899999999999888999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++++|+.++|.+||+.++++.....++|+..+|..|+||||+||+.+|+
T Consensus 346 ~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 346 KIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999998888999999999999999999999984
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-35 Score=216.40 Aligned_cols=131 Identities=50% Similarity=0.913 Sum_probs=123.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|+.++||||||||+|+++.+|...+.........++.++|..|+++...++|+||+|||+|+.||++++||||||+
T Consensus 294 lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~ 373 (467)
T 4b4t_H 294 LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDR 373 (467)
T ss_dssp HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCE
T ss_pred HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccE
Confidence 58999999999999999999999997766666667778999999999999888999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++++|+.++|.+||+.++++..+..++++..+|+.|+||||+||+.+|+
T Consensus 374 ~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 374 KVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp EECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999888999999999999999999999984
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=213.99 Aligned_cols=131 Identities=58% Similarity=0.978 Sum_probs=121.6
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..|+.++||||||||+|+++.++.............+++++|+.|+++....+|+||||||+|+.||++++||||||+
T Consensus 257 lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~ 336 (428)
T 4b4t_K 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDR 336 (428)
T ss_dssp HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEE
T ss_pred HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceE
Confidence 58999999999999999999999987665555556678999999999999888999999999999999999999999999
Q ss_pred EEEeC-CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~-~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|++| +|+.++|..||+.++++.+...++|+..+|..|+||||+||+.+|+
T Consensus 337 ~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 337 KIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 99996 8999999999999999999888999999999999999999999984
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5e-34 Score=224.51 Aligned_cols=131 Identities=36% Similarity=0.674 Sum_probs=89.0
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|++++||||||||+|+++.+|+...........++++++|.+|+++....+|+||||||+|+.||++++||||||+
T Consensus 562 lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~ 641 (806)
T 3cf2_A 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 641 (806)
T ss_dssp HHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCC
T ss_pred HHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceE
Confidence 59999999999999999999999986543333334457899999999999888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+|++++|+.++|.+||+.++++.++..++|+..+|+.|+||||+||+.+|+
T Consensus 642 ~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 642 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp EEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH
T ss_pred EEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999998888999999999999999999999984
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=3.3e-30 Score=202.95 Aligned_cols=128 Identities=41% Similarity=0.694 Sum_probs=117.1
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|++++||||||||+|.+++++++.+... ...++++++..|+++...++|+||+|||+++.||++++|||||++
T Consensus 289 lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~---~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~ 365 (806)
T 3cf2_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEV---ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp HHHHHTTSCSEEEEEESGGGTCCTTTTCCCTT---HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCE
T ss_pred HHHHHHHcCCeEEEEehhcccccccCCCCChH---HHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccce
Confidence 48999999999999999999999886544433 346788899999998888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+++.|+.++|.+||+.++++.....++|+..+|..|+||+++||+.||+
T Consensus 366 ~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp EEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999998889999999999999999999999873
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.93 E-value=3.9e-26 Score=163.13 Aligned_cols=131 Identities=36% Similarity=0.674 Sum_probs=112.2
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+..+|+||||||+|.+...++.............+..++..++++....+++||+|||.++.+|++++|||||+.
T Consensus 100 ~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~ 179 (301)
T 3cf0_A 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 179 (301)
T ss_dssp HHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCE
T ss_pred HHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccce
Confidence 47889999999999999999987764332211111234667788888888777789999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+++++|+.++|.+|++++++..+...++++..++..+.||+|+||+.+|+
T Consensus 180 ~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 180 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred EEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999888777889999999999999999999874
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.93 E-value=1e-25 Score=169.50 Aligned_cols=131 Identities=47% Similarity=0.745 Sum_probs=111.4
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+.++|+||||||+|.+..+++.............++.++..++++....+++||+|||.++.+|++++|||||+.
T Consensus 100 lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~ 179 (476)
T 2ce7_A 100 LFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDK 179 (476)
T ss_dssp HHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCE
T ss_pred HHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCccee
Confidence 48899999999999999999998775432233334456788899999887667789999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+.+++|+.++|.+|++.+++..++..+.++..++..|.||+++||+.+|+
T Consensus 180 ~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 180 KIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999888888889999999999999999999874
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=157.74 Aligned_cols=128 Identities=34% Similarity=0.604 Sum_probs=105.2
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+...|+++++||+|.++..++.... .......+.++..+++...+..++++++||.|+.+|++++||||||+
T Consensus 95 vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~ 171 (274)
T 2x8a_A 95 VFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDK 171 (274)
T ss_dssp HHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCE
T ss_pred HHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCe
Confidence 478888899999999999998876532211 11234677888999998888889999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcC---CCCCCcccHHHHHHHc--CCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSR---MTLAEDVNLQELIMAK--DDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~---~~~~~~~~~~~la~~t--~g~s~~di~~l~~ 131 (131)
.|++++|+.++|.+||+.++++ .....++++..+|..| +||||+||+.+|+
T Consensus 172 ~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 9999999999999999999864 2345688999999975 5999999999874
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.92 E-value=5.4e-24 Score=148.57 Aligned_cols=131 Identities=40% Similarity=0.715 Sum_probs=113.7
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+...|+++|+||+|.+...+..............+..++..++++....+++||+|||.++.+|++++|+|||+.
T Consensus 96 ~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~ 175 (257)
T 1lv7_A 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 175 (257)
T ss_dssp HHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCE
T ss_pred HHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCe
Confidence 37888888999999999999988764432222333446778888999988777889999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+++++|+.++|.+|++.+++..++..+.++..++..+.||+++||+.+|+
T Consensus 176 ~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 176 QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999888888888999999999999999998863
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=154.04 Aligned_cols=126 Identities=34% Similarity=0.554 Sum_probs=110.1
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-CCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|..|+..+|+||||||+|.+..+++... ......++.+++..++++.. ..+++||+|||.++.+|++++| ||+
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~ 171 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFE 171 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCC
T ss_pred HHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcC
Confidence 47889999999999999999998875432 22345678889999998864 4789999999999999999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
..+++++|+.++|.+|++.++...+.. .+.++..++..|.||+|+||+.+|+
T Consensus 172 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 172 KRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999887654 5678999999999999999999984
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=1.2e-23 Score=148.57 Aligned_cols=131 Identities=59% Similarity=0.996 Sum_probs=117.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|..++...|+||||||+|.+..++..............+..++..++++...+++++|+|||.++.++++++++|||+.
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~ 181 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR 181 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEE
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCe
Confidence 37788999999999999999998876555555556677888899999888777899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+.++.|+.++|.+|++.++.......+.++..++..+.||+++||..+|+
T Consensus 182 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 182 IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999888878889999999999999999999873
No 15
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.90 E-value=2.5e-23 Score=145.01 Aligned_cols=131 Identities=47% Similarity=0.741 Sum_probs=108.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.+....|+++++||+|.+...+..............+..++..+++...+..++++++||.|+.+|++++|+|||+.
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~ 179 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDR 179 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCe
Confidence 36777778899999999999987664321122234456778888899988777789999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.++++.|+.++|.+||+.++++..+..+.++..++..+.||+++||+.+|+
T Consensus 180 ~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 180 QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp EEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999998887778888999999999999999999873
No 16
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.90 E-value=1.3e-23 Score=158.78 Aligned_cols=130 Identities=46% Similarity=0.737 Sum_probs=112.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceE
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRK 81 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~ 81 (131)
|+.|+...|+|+||||+|.+...++.............++.++..+++...+..++++++||.|+.+|++++|||||+..
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~ 195 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 195 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCE
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceE
Confidence 66677788999999999999877643222223344577889999999887778899999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+.++.|+.++|.+||+.++++..+..+.++..++..|.||+++||+.+|+
T Consensus 196 i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 196 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp EECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999998888888888999999999999999999874
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.89 E-value=4.5e-23 Score=148.42 Aligned_cols=126 Identities=34% Similarity=0.515 Sum_probs=105.6
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC-CCCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD-SRGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|..|+..+|+||||||+|.+..++....... ...+...++..++++. ...+++||+|||.++.+|++++| ||+
T Consensus 102 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~ 176 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEA---SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFE 176 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGGGSCC------CC---THHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCC
T ss_pred HHHHHHhcCCeEEEechhhhhhccCCCCcchH---HHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccC
Confidence 47889999999999999999998774433222 3456778888888774 44689999999999999999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
..+++++|+.++|.+|++.++...... .+.++..++..|+||+++||..+|+
T Consensus 177 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 177 RRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999887654 5678999999999999999999873
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.89 E-value=9.8e-23 Score=153.93 Aligned_cols=128 Identities=41% Similarity=0.700 Sum_probs=112.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|...+|++|||||+|.+..+++.... .....+...++..+++.....+++||+|||.++.+|++++++|||+.
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~---~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~ 365 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCC---HHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCE
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccc---hHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCce
Confidence 388899999999999999999987743322 22345677788888877777889999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.++++.|+.++|.+||+.+++......+.++..++..+.||+++||..||+
T Consensus 366 ~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 999999999999999999999988888889999999999999999999873
No 19
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=1.7e-25 Score=177.25 Aligned_cols=131 Identities=36% Similarity=0.674 Sum_probs=109.8
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|+...|+||||||+|.++..+.............+++.++..|+++....+++||+|||.++.+|++++|||||+.
T Consensus 562 ~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~ 641 (806)
T 1ypw_A 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 641 (806)
T ss_dssp HHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTS
T ss_pred HHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCc
Confidence 48899999999999999999998885444434445668889999999998888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.|+++.|+.++|.+||+.+++......+.++..++..+.|||++||+.+|+
T Consensus 642 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 642 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 999999999999999999999888888888999999999999999999874
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.89 E-value=7.9e-23 Score=149.06 Aligned_cols=126 Identities=34% Similarity=0.517 Sum_probs=104.0
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-CCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|..|+..+|+||||||+|.+...+...+. .....+...++..++++.. ..+++||+|||.++.+|++++| ||+
T Consensus 135 ~f~~a~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~ 209 (355)
T 2qp9_X 135 LFAMARENKPSIIFIDQVDALTGTRGEGES---EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFE 209 (355)
T ss_dssp HHHHHHHTSSEEEEEECGGGGTC------C---THHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCC
T ss_pred HHHHHHHcCCeEEEEechHhhcccCCCCcc---hHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccC
Confidence 478889999999999999999887643322 2344567788888887754 4679999999999999999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
..+++++|+.++|.+||+.++...+.. .+.++..|+..|+||+|+||..+|+
T Consensus 210 ~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 210 RRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999887654 5678999999999999999999874
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.89 E-value=1.2e-22 Score=151.94 Aligned_cols=126 Identities=36% Similarity=0.562 Sum_probs=109.0
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-CCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|..|+..+|+||||||+|.++..+..... .....+...++..++++.. ..+++||+|||.++.+|++++| ||+
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~ 293 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCGSRSENES---EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFE 293 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCCCSSCCCC---GGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCC
T ss_pred HHHHHHHcCCeEEEEechHhhccCCCCccc---cHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcc
Confidence 478899999999999999999987754322 2234677889999998754 4689999999999999999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
..+++++|+.++|..||+.++...+.. .+.++..++..|+||+|+||..+|+
T Consensus 294 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 294 KRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999877654 5678999999999999999999874
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.88 E-value=2.8e-22 Score=141.52 Aligned_cols=131 Identities=47% Similarity=0.741 Sum_probs=109.2
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.+....|+++++||+|.+...+..............+..++..+++...+..++++++||.|+.+|++++|++||+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~ 203 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDR 203 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCC
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCe
Confidence 37778878899999999999876653211112233456778888899987777789999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
.+++++|+.++|.+||+.+++...+..+.++..++..+.||+++||+.+|+
T Consensus 204 ~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 204 QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999998887778888999999999999999998863
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=140.40 Aligned_cols=131 Identities=43% Similarity=0.691 Sum_probs=99.2
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCC-chhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 79 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~ 79 (131)
+|+.|+...|+||||||+|.+..++...... ........+..++..+++.....++++|+|||.++.+|++++++|||+
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLD 169 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCC
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCC
Confidence 3778888899999999999998776432211 122233567788888888777788999999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCCCccc--HHHHHHHcCCCCHHHHHHhhC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN--LQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~--~~~la~~t~g~s~~di~~l~~ 131 (131)
..+++++|+.++|.+|+++++...+.....+ +..++..+.||+++||..+|+
T Consensus 170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999998776654333 578999999999999998873
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.85 E-value=1.1e-22 Score=142.61 Aligned_cols=131 Identities=46% Similarity=0.724 Sum_probs=103.2
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCC-CchhHHHHHHHHHHHHhcCCCCC-CCeEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNS-GGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
+|+.|+..+|+||||||+|.+..++...+. .........+..++..+++.... .++++|+|||.++.+|++++++|||
T Consensus 95 ~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf 174 (268)
T 2r62_A 95 LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRF 174 (268)
T ss_dssp THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSS
T ss_pred HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCC
Confidence 588899999999999999999876532110 00001112445566777765443 4599999999999999999999999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+..+++++|+.++|.++|+.+++......+.++..++..+.||+++||..+|+
T Consensus 175 ~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 175 DRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp CCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred CeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999887777778888999999999999998863
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=134.11 Aligned_cols=126 Identities=32% Similarity=0.555 Sum_probs=101.6
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC--CCCeEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
+|..|+..+|+||||||+|.+...++... .......+..++..+++... ..+++||+|||.++.+++++++ ||
T Consensus 168 ~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf 242 (357)
T 3d8b_A 168 LFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RL 242 (357)
T ss_dssp HHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TC
T ss_pred HHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hC
Confidence 37788889999999999999987763322 22344677788888887643 3579999999999999999999 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+..++++.|+.++|.++++.++...... .+.++..++..+.||+++||..+|+
T Consensus 243 ~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 243 VKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999776544 4557899999999999999999874
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=1.1e-19 Score=128.96 Aligned_cols=126 Identities=33% Similarity=0.540 Sum_probs=98.9
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC---CCeEEEeeCCCCCcccccccCCCc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR---GDVKVIMATNRIETLDPALIRPGR 77 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~v~vi~ttn~~~~id~~l~~~gr 77 (131)
+|..|+..+|+||||||+|.+...++....... ......++..+++.... .++++|++||.++.+++++++ |
T Consensus 105 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R 179 (297)
T 3b9p_A 105 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS---RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--R 179 (297)
T ss_dssp HHHHHHHTCSEEEEEETGGGTSBCC-----CCS---HHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--H
T ss_pred HHHHHHHcCCcEEEeccHHHhccccccCcchHH---HHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--h
Confidence 367888899999999999999887743322222 23455666666665433 579999999999999999999 9
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
|+..+++++|+.++|..+++.++...+.. .+.++..++..+.||+++||..+|+
T Consensus 180 ~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 180 FTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999998765543 4456888999999999999998873
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=5.3e-19 Score=130.08 Aligned_cols=126 Identities=33% Similarity=0.497 Sum_probs=98.7
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC--CCCeEEEeeCCCCCcccccccCCCcc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETLDPALIRPGRI 78 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~vi~ttn~~~~id~~l~~~grf 78 (131)
+|..|+..+|+||||||+|.++..+...... ....+...++..+++... ..+++||+|||.++.+++++++ ||
T Consensus 199 ~~~~a~~~~~~il~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~ 273 (389)
T 3vfd_A 199 LFAVARELQPSIIFIDQVDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RF 273 (389)
T ss_dssp HHHHHHHSSSEEEEEETGGGGC--------C---THHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TC
T ss_pred HHHHHHhcCCeEEEEECchhhcccCCCccch---HHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--Cc
Confidence 4788999999999999999998876432222 234566667777776544 3579999999999999999999 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+..++++.|+.++|.+||+.++...... .+.++..++..+.||++++|..||+
T Consensus 274 ~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 274 IKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999876544 4457889999999999999998873
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.79 E-value=5.3e-20 Score=130.99 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=83.7
Q ss_pred HHHH----HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC-----------CCCCeEEEeeCCCCC
Q psy522 2 FRVA----EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------SRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A----~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~v~vi~ttn~~~ 66 (131)
|..| ++.+|+||||||+|.+.+.+... .........+...+++.+++.. ..++++||+|||.++
T Consensus 88 f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 88 YREAAEIIRKGNMCCLFINDLDAGAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp HHHHHHHHTTSSCCCEEEECCC---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred HHHHHHHHhcCCCeEEEEechhhhcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 5555 67899999999999998855321 1111122344556666665332 446799999999999
Q ss_pred cccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHH
Q psy522 67 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 128 (131)
Q Consensus 67 ~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~ 128 (131)
.+|++++|||||+..++ .|+.++|.+|++.++... ++++..++..++||++++|..
T Consensus 167 ~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 167 TLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp C--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred cCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999999999998887 579999999999888743 567888999999999998863
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.76 E-value=6.7e-18 Score=133.99 Aligned_cols=127 Identities=41% Similarity=0.702 Sum_probs=111.7
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+|+.|....|+++|+||+|.+..++..... .....+...++..+++......+++|++||.++.+|++++++|||+.
T Consensus 289 vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~ 365 (806)
T 1ypw_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp HHHHHHHHCSEEEEEESGGGTSCTTSCCCS---HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCE
T ss_pred HHHHHHhcCCcEEEeccHHHhhhccccccc---hHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccccc
Confidence 478899999999999999999987743322 22345667788888888777889999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.+.++.|+.++|.++++.++.+.....+.++..++..+.||+++|+..+|
T Consensus 366 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp EECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 99999999999999999999988888888899999999999999999876
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.51 E-value=9.9e-18 Score=125.65 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=70.9
Q ss_pred HHHH---HhcCCeEEEecccccccCcCCCCCCCchh-HHH---------------HHHHHHHHHhc--CCCCCCCeEEEe
Q psy522 2 FRVA---EEHAPSIVFIDEIDAVGTKRYDSNSGGER-EIQ---------------RTMLELLNQLD--GFDSRGDVKVIM 60 (131)
Q Consensus 2 F~~A---~~~~p~ii~iDe~d~l~~~~~~~~~~~~~-~~~---------------~~~~~~l~~~~--~~~~~~~v~vi~ 60 (131)
|+.| +..+|+||||||+|.++.+++........ ... .+...++..++ ++...+.+++++
T Consensus 116 f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~a 195 (456)
T 2c9o_A 116 FRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEA 195 (456)
T ss_dssp HHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEET
T ss_pred HHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEc
Confidence 6667 77889999999999999888543211110 000 11123444443 333444577779
Q ss_pred eCCCCCcccccccCCCccce--EEEeCCC--CHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 61 ATNRIETLDPALIRPGRIDR--KIEFPLP--DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 61 ttn~~~~id~~l~~~grf~~--~i~~~~P--~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
|||.++.+|+++.||||||. .++++.| +.++|.+|++.+.. .+++.++..|+| |+||..+|
T Consensus 196 ttn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~ 260 (456)
T 2c9o_A 196 NSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMM 260 (456)
T ss_dssp TTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------------
T ss_pred CCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHH
Confidence 99999999999999999998 6677777 45788888876553 268889999999 99999887
No 31
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=75.91 Aligned_cols=47 Identities=34% Similarity=0.698 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
|+|+.++|.+||+.++++.+...++|+..+|..|+||||+||+.+|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 68999999999999999998888899999999999999999999984
No 32
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.28 E-value=2.7e-12 Score=75.62 Aligned_cols=48 Identities=31% Similarity=0.636 Sum_probs=45.0
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
-.+|+.++|.+||+.++++.++..++|+..||+.|+||||+||+.+|+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999999998888899999999999999999999984
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.21 E-value=2.7e-11 Score=84.76 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=80.1
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC-CCeEEEeeCCCCCcccc-cccCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNRIETLDP-ALIRPGRID 79 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~v~vi~ttn~~~~id~-~l~~~grf~ 79 (131)
|+.+....|++|+|||+|.++..+.... .... ..+..+...+++.... .++++|+|||.++.+++ .+.+ ||+
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~---~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~ 190 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSN---LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFS 190 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCH---HHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSS
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCCh-hHHH---HHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccc
Confidence 5667777899999999999987653221 1222 3445555556655433 46889999999999988 6666 999
Q ss_pred eEEEeCCCCH-HHHHHHHHHHhcCCCCCCcccHHHHHHHcCCC----CHHHHHHhh
Q psy522 80 RKIEFPLPDE-KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL----SGADIKAIC 130 (131)
Q Consensus 80 ~~i~~~~P~~-~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~----s~~di~~l~ 130 (131)
..+.+|+++. ++...++.. ...+ .+.++..++..+.|| ...++..++
T Consensus 191 ~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 191 TTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred eEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 9998877654 444444443 2222 345688899999998 556655543
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.16 E-value=4.6e-11 Score=84.74 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=76.7
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCCCccceEE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRPGRIDRKI 82 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~grf~~~i 82 (131)
..++||||||+|.++..++. ..... ..+..++..++. ...++++|++||.++ .+++++++ ||+..+
T Consensus 129 ~~~~vl~iDEid~l~~~~~~--~~~~~---~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i 199 (309)
T 3syl_A 129 AMGGVLFIDEAYYLYRPDNE--RDYGQ---EAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFRS--RIAHHI 199 (309)
T ss_dssp HTTSEEEEETGGGSCCCC-----CCTH---HHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEE
T ss_pred cCCCEEEEEChhhhccCCCc--ccccH---HHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEE
Confidence 35789999999999866532 11222 344555555553 345788889988643 35799999 999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHc------CCC-CHHHHHHhh
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK------DDL-SGADIKAIC 130 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t------~g~-s~~di~~l~ 130 (131)
++++|+.+++.+|+++++...+.. .+..+..++... ..+ .++++..++
T Consensus 200 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 200 EFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 999999999999999999866544 222344455542 222 356666554
No 35
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.08 E-value=2.9e-11 Score=92.45 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=60.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-------------CCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-------------RGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~v~vi~ttn~~~~i 68 (131)
|..|....| |+||||+|.+...... .....++..++.... ...+++|+|||.++.+
T Consensus 169 ~~~a~~~~~-vl~lDEid~l~~~~~~----------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l 237 (543)
T 3m6a_A 169 MKKAGKLNP-VFLLDEIDKMSSDFRG----------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATI 237 (543)
T ss_dssp HHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTS
T ss_pred HHHhhccCC-EEEEhhhhhhhhhhcc----------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccC
Confidence 444555665 9999999999765421 122334444443211 1568999999999999
Q ss_pred cccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q psy522 69 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 69 d~~l~~~grf~~~i~~~~P~~~~R~~il~~~l 100 (131)
++++++ ||+ .|.++.|+.+++.+|++.++
T Consensus 238 ~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 238 PGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred CHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 999999 996 79999999999999999886
No 36
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.06 E-value=1.1e-10 Score=68.93 Aligned_cols=44 Identities=23% Similarity=0.519 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 88 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
|.++|.+||+.++++.+...++|+..||+.|+||||+||+.+|+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~ 45 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 45 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHH
Confidence 56899999999999999888999999999999999999999984
No 37
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.03 E-value=1.9e-10 Score=67.09 Aligned_cols=44 Identities=45% Similarity=0.808 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 88 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
+.++|.+||+.++++.+...++|+..+|..|+||||+||+.+|+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~ 45 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQ 45 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 78999999999999998888899999999999999999999984
No 38
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.97 E-value=2.4e-09 Score=76.80 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=75.0
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc------------CCC-CCCCeEEEeeCCCCCcccccccC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD------------GFD-SRGDVKVIMATNRIETLDPALIR 74 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~~-~~~~v~vi~ttn~~~~id~~l~~ 74 (131)
..+++|||||+|.+... ....+...+..-. .+. ..+++++|++||....+++++++
T Consensus 105 ~~~~vl~lDEi~~l~~~-----------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~ 173 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPA-----------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD 173 (338)
T ss_dssp CTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT
T ss_pred cCCCEEEEechhhcCHH-----------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh
Confidence 46899999999998421 1222333332211 000 11258999999999999999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 75 PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 75 ~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
||+..+.+++|+.+++..+++.++...+.. .+..+..++..+.|. ++++..+
T Consensus 174 --R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~ 226 (338)
T 3pfi_A 174 --RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST-PRIALRL 226 (338)
T ss_dssp --TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC-HHHHHHH
T ss_pred --hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC-HHHHHHH
Confidence 999999999999999999999998765543 233466677766664 4555443
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.96 E-value=4.3e-09 Score=74.90 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=77.6
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc-----CCC--------CCCCeEEEeeCCCCCcccccccC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD-----GFD--------SRGDVKVIMATNRIETLDPALIR 74 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~--------~~~~v~vi~ttn~~~~id~~l~~ 74 (131)
..+.+|||||+|.+... ....+..++.... +.. ...++.+|++||.+..+++++.+
T Consensus 89 ~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~ 157 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157 (324)
T ss_dssp CTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT
T ss_pred cCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh
Confidence 46789999999987422 1223333333321 000 11358899999999999999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 75 PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 75 ~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
||+..+.+++|+.+++..+++.++...+.. .+..+..++..+.|. ++++..++
T Consensus 158 --R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l 211 (324)
T 1hqc_A 158 --RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLF 211 (324)
T ss_dssp --TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHH
T ss_pred --cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHH
Confidence 999899999999999999999998765544 233477788888775 56666553
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.94 E-value=6.3e-09 Score=70.25 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=77.0
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..|.+|+|||+|.+.. .....++..++. ...++.+|++|+.+..+++.+.+ |+ ..+.+++|
T Consensus 125 ~~~~vlviDe~~~l~~--------------~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l 185 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKAL 185 (250)
T ss_dssp SSSEEEEEETGGGSCH--------------HHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCC
T ss_pred CCceEEEEECcccccH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCC
Confidence 3579999999999731 133344555543 24578899999999999999998 76 68999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 88 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
+.++..++++.++...+.. .+..+..+++.+.| .++.+..++
T Consensus 186 ~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~ 228 (250)
T 1njg_A 186 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLT 228 (250)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 9999999999988654433 33347788888888 677777654
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.93 E-value=1.4e-09 Score=81.15 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=73.2
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc---ccccccCCCccc--eEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---LDPALIRPGRID--RKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~---id~~l~~~grf~--~~i~ 83 (131)
.|.||+|||+|.+..++ ..... ++..++.....+..++|+|.+.+.. +++.+++ ||. ..+.
T Consensus 194 ~~~vL~IDEi~~l~~~~---------~~q~~---l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~ 259 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT---------GVQTE---LFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAK 259 (440)
T ss_dssp TCSEEEEECGGGGSSCH---------HHHHH---HHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCB
T ss_pred CCCEEEEeCcccccCCh---------HHHHH---HHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEE
Confidence 78999999999986532 01122 2222222224456677777766666 7899999 986 7899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
+++|+.++|.++++..+...+.. ++..+..++..+.| +++++..++
T Consensus 260 l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L 306 (440)
T 2z4s_A 260 LEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAI 306 (440)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 99999999999999987643332 22236778887766 577776554
No 42
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.92 E-value=4e-09 Score=74.46 Aligned_cols=86 Identities=27% Similarity=0.346 Sum_probs=63.0
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC--------CCCCeEEEee----CCCCCcccccccCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD--------SRGDVKVIMA----TNRIETLDPALIRPG 76 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~v~vi~t----tn~~~~id~~l~~~g 76 (131)
.++||||||+|.+....... ........+...++..+++.. ...++++|++ ++.+..+++++++
T Consensus 116 ~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~-- 191 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG-- 191 (310)
T ss_dssp HHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--
T ss_pred CCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--
Confidence 47899999999998765321 122222233455666666431 2346888888 5688999999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHH
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNI 98 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~ 98 (131)
||+..+++++|+.+++.+|++.
T Consensus 192 R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 192 RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp TCCEEEECCCCCHHHHHHHHHS
T ss_pred hCCceEEcCCcCHHHHHHHHHh
Confidence 9998999999999999999983
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.92 E-value=2.5e-09 Score=77.44 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=73.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeC-----------CCCCcccccccCCCcc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMAT-----------NRIETLDPALIRPGRI 78 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~tt-----------n~~~~id~~l~~~grf 78 (131)
|+||||||+|.+.. .....++..++.. ..+++++++. |.+..+++++++ ||
T Consensus 190 ~~vl~IDEi~~l~~--------------~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI--------------ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp BCEEEEESGGGSBH--------------HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred CceEEEhhccccCh--------------HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 78999999998842 2334455555432 2346655554 357889999999 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHhh
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.. +.+++|+.+++.++++..+...+.. .+..+..++..+.|.+++++..++
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 76 8999999999999999988754443 333477788888756788877765
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.80 E-value=1.1e-08 Score=73.03 Aligned_cols=104 Identities=15% Similarity=0.276 Sum_probs=71.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC---cccccccCCCccc--eEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE---TLDPALIRPGRID--RKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~---~id~~l~~~grf~--~~i~ 83 (131)
.|.+|||||++.+..++ .....+..+++.+ ...+..+++++++.+. .+++++.+ ||. ..+.
T Consensus 98 ~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~---~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~ 163 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTL---YLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVE 163 (324)
T ss_dssp TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHH---HHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEE
T ss_pred CCCEEEEcCcccccCCh---------HHHHHHHHHHHHH---HHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEE
Confidence 48999999999986532 0112222232222 2345678888888777 68999999 996 7899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
+++ +.++|.++++..+...+.. ++..+..++..+ | ..+++..+
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~ 207 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGK 207 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHH
Confidence 999 9999999999998754443 233477788877 4 45655544
No 45
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.80 E-value=2.3e-08 Score=66.79 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=70.5
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..|.+|+|||+|.+... ....+..+ ++. ...++.+|++||.++.+++++.+ ||. .+.+++|
T Consensus 101 ~~~~vliiDe~~~l~~~-----------~~~~l~~~---l~~--~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~ 161 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-----------AQAALRRT---MEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPV 161 (226)
T ss_dssp CSCEEEEEETGGGSCHH-----------HHHHHHHH---HHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCC
T ss_pred cCceEEEEeChhhcCHH-----------HHHHHHHH---HHh--cCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCC
Confidence 56899999999998432 11223333 332 23567889999999999999999 997 8999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHH
Q psy522 88 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADI 126 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di 126 (131)
+.++..++++..+...+.. .+..+..++..+.|- +..+
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~l 200 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKA 200 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHH
Confidence 9999999999987643333 223466677777663 4433
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.80 E-value=3.6e-09 Score=83.50 Aligned_cols=89 Identities=30% Similarity=0.397 Sum_probs=64.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRPG 76 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~g 76 (131)
|+.++...++||||||+|.++++..... .... ..+.+..+...+.+.+|++|+.++ .+|+++.+
T Consensus 271 ~~~~~~~~~~iL~IDEi~~l~~~~~~~~--~~~~-------~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~-- 339 (758)
T 1r6b_X 271 LKQLEQDTNSILFIDEIHTIIGAGAASG--GQVD-------AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR-- 339 (758)
T ss_dssp HHHHSSSSCEEEEETTTTTTTTSCCSSS--CHHH-------HHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGG--
T ss_pred HHHHHhcCCeEEEEechHHHhhcCCCCc--chHH-------HHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHh--
Confidence 4556666789999999999987653221 1111 122333444567788999998653 57899999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
||+ .+.++.|+.++|.++++.+...
T Consensus 340 Rf~-~i~v~~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 340 RFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_dssp GEE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred Cce-EEEcCCCCHHHHHHHHHHHHHH
Confidence 998 7999999999999999987643
No 47
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.74 E-value=4.1e-10 Score=84.07 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=5.0
Q ss_pred ecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEee-CCCCCcccccccCCCccceEEEeCCCCHH-HH
Q psy522 15 IDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA-TNRIETLDPALIRPGRIDRKIEFPLPDEK-TK 92 (131)
Q Consensus 15 iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~t-tn~~~~id~~l~~~grf~~~i~~~~P~~~-~R 92 (131)
+||+|.+.... .. .....++..++..|+++.....+ +++ ||+++.+|++++||||||+.|+++.|+.. .|
T Consensus 113 ~De~d~~~~~~---~~---~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~ 184 (444)
T 1g41_A 113 QQEIAKNRARA---ED---VAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMG 184 (444)
T ss_dssp HHHHHSCC------------------------------------------------------------------------
T ss_pred hhhhhhhhccc---hh---hHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccch
Confidence 67766654222 11 12246788888899988665554 455 99999999999999999999999999988 77
Q ss_pred HHHH
Q psy522 93 RRIF 96 (131)
Q Consensus 93 ~~il 96 (131)
.+|+
T Consensus 185 ~ei~ 188 (444)
T 1g41_A 185 VEIM 188 (444)
T ss_dssp ----
T ss_pred hhhh
Confidence 7775
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.74 E-value=7.9e-09 Score=70.16 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=68.2
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCe-EEEeeCCCCC---cccccccCCCccc--eE
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV-KVIMATNRIE---TLDPALIRPGRID--RK 81 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v-~vi~ttn~~~---~id~~l~~~grf~--~~ 81 (131)
..|.+|+|||+|.+.... .....+..++... ...+.+ ++++++..+. .+++.+.+ ||. ..
T Consensus 103 ~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~---~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~ 168 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRV---AEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLT 168 (242)
T ss_dssp GGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHH---HHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEE
T ss_pred cCCCEEEEeccccccCCH---------HHHHHHHHHHHHH---HHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCce
Confidence 347899999999985432 0112233333222 223344 5555555554 45688888 886 89
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
+.+++|+.+++.++++.++...+.. .+..+..++..+.| +.+++..+
T Consensus 169 i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~ 216 (242)
T 3bos_A 169 YQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDV 216 (242)
T ss_dssp EECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 9999999999999999998754433 22346667777765 56665554
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.74 E-value=2.4e-08 Score=72.26 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC---CcccccccCCCccce-EEEe
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI---ETLDPALIRPGRIDR-KIEF 84 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~---~~id~~l~~~grf~~-~i~~ 84 (131)
.|.+|+|||+|.+...+ .....+..++..+.......++.+|++||.+ +.+++.+.+ ||.. .+.+
T Consensus 130 ~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l 198 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVF 198 (387)
T ss_dssp SEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCB
T ss_pred CeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEee
Confidence 48899999999986432 0124555566655543225578999999987 788999999 9975 8999
Q ss_pred CCCCHHHHHHHHHHHhcC----CCCCCcccHHHHHHHcC
Q psy522 85 PLPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKD 119 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~ 119 (131)
++|+.++..++++..+.. ..+. +..+..++..+.
T Consensus 199 ~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~ 236 (387)
T 2v1u_A 199 PPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAA 236 (387)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHH
Confidence 999999999999988753 2222 223666777666
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.73 E-value=5.7e-09 Score=68.25 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=53.7
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCCCccce
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRPGRIDR 80 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~grf~~ 80 (131)
+...|+||+|||+|.+...+....... ....+..++ ..+++.+|++||.+. .+++++++ ||+
T Consensus 112 ~~~~~~vl~iDe~~~l~~~~~~~~~~~---~~~~l~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~- 178 (195)
T 1jbk_A 112 KQEGNVILFIDELHTMVGAGKADGAMD---AGNMLKPAL-------ARGELHCVGATTLDEYRQYIEKDAALER--RFQ- 178 (195)
T ss_dssp HSTTTEEEEEETGGGGTT------CCC---CHHHHHHHH-------HTTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-
T ss_pred hcCCCeEEEEeCHHHHhccCcccchHH---HHHHHHHhh-------ccCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-
Confidence 345689999999999976542211111 122333333 234677888888776 78999999 998
Q ss_pred EEEeCCCCHHHHHHHH
Q psy522 81 KIEFPLPDEKTKRRIF 96 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il 96 (131)
.+++++|+.++|.+|+
T Consensus 179 ~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 179 KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECCCCCHHHHHTTC
T ss_pred eeecCCCCHHHHHHHh
Confidence 6999999999998875
No 51
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.71 E-value=7.3e-10 Score=64.47 Aligned_cols=42 Identities=43% Similarity=0.611 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHhhC
Q psy522 90 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 131 (131)
++|.+||+.++++.++..++|+..+|..|+||||+||+.+|+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~ 42 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 42 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 479999999999988878899999999999999999999984
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.70 E-value=1.4e-08 Score=71.92 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=73.3
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC------CCCCeEEEeeCCC---------------
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD------SRGDVKVIMATNR--------------- 64 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~v~vi~ttn~--------------- 64 (131)
+....+||||||+|.+-. .....+..++..-.-.. .-.++++|+|||.
T Consensus 116 ~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~ 184 (311)
T 4fcw_A 116 RRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPY 184 (311)
T ss_dssp HHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCS
T ss_pred HhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccH
Confidence 344559999999998732 12233333333211000 1136789999998
Q ss_pred -----------CCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC-------CCC---CcccHHHHHHHcC--CC
Q psy522 65 -----------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMAKD--DL 121 (131)
Q Consensus 65 -----------~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~~t~--g~ 121 (131)
...+++++.+ ||+..+.+++|+.+++..|+++++... ... .+..+..++...- ..
T Consensus 185 ~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 262 (311)
T 4fcw_A 185 ERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVF 262 (311)
T ss_dssp STHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTT
T ss_pred HHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccC
Confidence 5578899998 999999999999999999999987542 111 2223555666544 56
Q ss_pred CHHHHHHhh
Q psy522 122 SGADIKAIC 130 (131)
Q Consensus 122 s~~di~~l~ 130 (131)
..++|+.++
T Consensus 263 n~R~L~~~i 271 (311)
T 4fcw_A 263 GARPLRRVI 271 (311)
T ss_dssp BTTTHHHHH
T ss_pred CchhHHHHH
Confidence 677776654
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.63 E-value=1.4e-08 Score=81.33 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=54.1
Q ss_pred HHHHHhc-CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC----cccccccCCC
Q psy522 2 FRVAEEH-APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE----TLDPALIRPG 76 (131)
Q Consensus 2 F~~A~~~-~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~----~id~~l~~~g 76 (131)
|..++.. .|+||||||+|.+.+.....+ .......+..++ ..+.+.+|++||.++ .+++++.+
T Consensus 255 ~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l-------~~~~i~~I~at~~~~~~~~~~d~aL~r-- 322 (854)
T 1qvr_A 255 IQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPAL-------ARGELRLIGATTLDEYREIEKDPALER-- 322 (854)
T ss_dssp HHHHHTTCSSEEEEECCC----------------------HHHH-------HTTCCCEEEEECHHHHHHHTTCTTTCS--
T ss_pred HHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHH-------hCCCeEEEEecCchHHhhhccCHHHHh--
Confidence 4555554 789999999999986653211 111222333333 235677999998765 47999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 77 RIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 77 rf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
||+. +.++.|+.+++.+|++.++.
T Consensus 323 Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 323 RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 9985 99999999999999987765
No 54
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.63 E-value=9.6e-08 Score=69.37 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=58.9
Q ss_pred HhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC-------------------CCCCeEEEeeCCCC-
Q psy522 6 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD-------------------SRGDVKVIMATNRI- 65 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~v~vi~ttn~~- 65 (131)
....|+||||||+|.+...+.+.+.........+...++..|++.. ...++++|+++|..
T Consensus 113 ~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~ 192 (363)
T 3hws_A 113 QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAG 192 (363)
T ss_dssp HHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTT
T ss_pred HhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHH
Confidence 3446899999999999887754443333333346666666666321 11233444444421
Q ss_pred ---------C------------------------------c-----ccccccCCCccceEEEeCCCCHHHHHHHHHH
Q psy522 66 ---------E------------------------------T-----LDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 98 (131)
Q Consensus 66 ---------~------------------------------~-----id~~l~~~grf~~~i~~~~P~~~~R~~il~~ 98 (131)
. . +.+++.. ||+..+.+++|+.+++..|+..
T Consensus 193 l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 193 LDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp HHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 1 1 6778887 9999999999999999999986
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.59 E-value=8.2e-08 Score=72.18 Aligned_cols=97 Identities=24% Similarity=0.276 Sum_probs=66.6
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCC
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRP 75 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~ 75 (131)
+|..++...|.||||| ... ... +.+......+.+.+|++||.++ .+|+++++
T Consensus 259 ~~~~~~~~~~~iLfiD------~~~------------~a~----~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~- 315 (468)
T 3pxg_A 259 VMDEIRQAGNIILFID------AAI------------DAS----NILKPSLARGELQCIGATTLDEYRKYIEKDAALER- 315 (468)
T ss_dssp HHHHHHTCCCCEEEEC------C------------------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH-
T ss_pred HHHHHHhcCCeEEEEe------Cch------------hHH----HHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH-
Confidence 3667778889999999 100 011 1122223456799999999887 68999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCC----CCC-CcccHHHHHHHcCCCC
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLA-EDVNLQELIMAKDDLS 122 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t~g~s 122 (131)
||. .+.++.|+.+++.+|++.++..+ +.. .+..+..++..+.+|.
T Consensus 316 -Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 316 -RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp -SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred -hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 997 59999999999999999987663 222 2233566666655544
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.55 E-value=1.1e-07 Score=75.12 Aligned_cols=78 Identities=26% Similarity=0.268 Sum_probs=58.4
Q ss_pred CHHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCC
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRP 75 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~ 75 (131)
+|..++...|+||||| ... ...+ .+......+.+.+|++||..+ .+|++++|
T Consensus 259 ~~~~~~~~~~~iLfiD------~~~------------~~~~----~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r- 315 (758)
T 3pxi_A 259 VMDEIRQAGNIILFID------AAI------------DASN----ILKPSLARGELQCIGATTLDEYRKYIEKDAALER- 315 (758)
T ss_dssp HHHHHHTCCCCEEEEC------C------------------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH-
T ss_pred HHHHHHhcCCEEEEEc------Cch------------hHHH----HHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh-
Confidence 3677888899999999 000 0111 122223456799999999888 79999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCC
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
||. .|.++.|+.+++.+|++.+...+
T Consensus 316 -Rf~-~i~v~~p~~~~~~~il~~~~~~~ 341 (758)
T 3pxi_A 316 -RFQ-PIQVDQPSVDESIQILQGLRDRY 341 (758)
T ss_dssp -SEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred -hCc-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 994 69999999999999999887663
No 57
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.53 E-value=5.9e-07 Score=64.86 Aligned_cols=101 Identities=22% Similarity=0.259 Sum_probs=73.3
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.||+|||+|.+.. .....++..++. ..+++++|++|+.+..+.+.+++ |+ ..+.+++|+
T Consensus 119 ~~~vliiDe~~~l~~--------------~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~ 179 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALD 179 (373)
T ss_dssp SSEEEEEECGGGSCH--------------HHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCC
T ss_pred CeEEEEEECcchhcH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCC
Confidence 478999999998732 133444555553 34578888889999999999998 87 689999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 89 EKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
.++...+++..+...+.. .+..+..++..+.| .+.++..+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~ 220 (373)
T 1jr3_A 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL 220 (373)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 999999999988654443 22336678888877 45555443
No 58
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=6.2e-07 Score=64.49 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=70.3
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..|.||+|||++.+- . .....++..+... ..++.+|.+|+.++.+.+.+++ |+ ..+.+++|
T Consensus 133 ~~~~vlilDE~~~L~-~-------------~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~ 193 (354)
T 1sxj_E 133 HRYKCVIINEANSLT-K-------------DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAP 193 (354)
T ss_dssp -CCEEEEEECTTSSC-H-------------HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCC
T ss_pred CCCeEEEEeCccccC-H-------------HHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCc
Confidence 367899999999852 1 1222333333332 2357888888999999999999 98 78999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-C-cccHHHHHHHcCCCCHHHHH
Q psy522 88 DEKTKRRIFNIHTSRMTLA-E-DVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~-~~~~~~la~~t~g~s~~di~ 127 (131)
+.++..++++..+...+.. + +..+..++..+.|- .+++.
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~-~r~a~ 234 (354)
T 1sxj_E 194 SDSEISTILSDVVTNERIQLETKDILKRIAQASNGN-LRVSL 234 (354)
T ss_dssp CHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTC-HHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCC-HHHHH
Confidence 9999999999988654443 2 34577788877663 44433
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.50 E-value=1.3e-07 Score=68.55 Aligned_cols=90 Identities=21% Similarity=0.362 Sum_probs=64.3
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHH-HHHHHHHhcCCCCCCCeEEEeeCCCC---CcccccccCCCccceEEEeCC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRT-MLELLNQLDGFDSRGDVKVIMATNRI---ETLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~v~vi~ttn~~---~~id~~l~~~grf~~~i~~~~ 86 (131)
.||+|||+|.+...+. . .. +..++... .++.+|+|||.+ +.+++.+.+ ||...+.+++
T Consensus 135 ~vlilDEi~~l~~~~~------~----~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~ 196 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRG------G----DIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKP 196 (384)
T ss_dssp EEEEEETTHHHHHSTT------S----HHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECC
T ss_pred CEEEEECHHHhccCCC------C----ceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECC
Confidence 4999999999864320 1 12 33333211 678999999987 788999999 9878999999
Q ss_pred CCHHHHHHHHHHHhcC----CCCCCcccHHHHHHHcC
Q psy522 87 PDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKD 119 (131)
Q Consensus 87 P~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~ 119 (131)
|+.++..++++..+.. ..+ .+..+..++..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~ 232 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISA 232 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHH
Confidence 9999999999998752 222 2234666777665
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.48 E-value=6.8e-07 Score=63.08 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=69.6
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..+.||+|||+|.+... ....++..++. ..+.+.+|++||.+..+++.+.+ |+. .+.+++|
T Consensus 101 ~~~~vliiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~ 161 (319)
T 2chq_A 101 APFKIIFLDEADALTAD--------------AQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPV 161 (319)
T ss_dssp CCCEEEEEETGGGSCHH--------------HHHTTGGGTSS--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCC
T ss_pred CCceEEEEeCCCcCCHH--------------HHHHHHHHHHh--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCC
Confidence 34799999999998421 22334444443 23568899999999999999999 886 8999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 88 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+.++...++...+...+.. .+..+..++..+.|
T Consensus 162 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999988766554 22346667766655
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.44 E-value=4.4e-07 Score=71.76 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=59.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC------CCCCCCeEEEeeCCCCCc--------
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG------FDSRGDVKVIMATNRIET-------- 67 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~v~vi~ttn~~~~-------- 67 (131)
+...+...++||||||+|.+- ......+..+++.-.- .....++++|+|||.+..
T Consensus 572 ~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~ 640 (758)
T 3pxi_A 572 TEKVRRKPYSVVLLDAIEKAH-----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640 (758)
T ss_dssp HHHHHHCSSSEEEEECGGGSC-----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHH
T ss_pred hHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHH
Confidence 345666778999999999862 1223334444433110 011235799999996544
Q ss_pred ----ccccccCCCccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 68 ----LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 68 ----id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
+.+++++ ||+..+.+++|+.+++..|++.++..
T Consensus 641 ~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 641 LKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp HHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 7888888 99999999999999999999988754
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.42 E-value=2.9e-07 Score=66.45 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=64.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCC---CcccccccCCCccc-eEEEeC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRI---ETLDPALIRPGRID-RKIEFP 85 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~---~~id~~l~~~grf~-~~i~~~ 85 (131)
|.||+|||+|.+..... . ..+..++..++.. ...++.+|++|+.+ +.+++.+.+ ||. ..+.++
T Consensus 129 ~~vlilDE~~~l~~~~~------~----~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~ 195 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYN------D----DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFP 195 (386)
T ss_dssp CEEEEEETHHHHHHSSC------S----THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEEC
T ss_pred eEEEEEcChhhhhccCc------C----HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeC
Confidence 89999999999864321 0 2344444445443 34578889999876 567888888 775 489999
Q ss_pred CCCHHHHHHHHHHHhcC----CCCCCcccHHHHHHHcC
Q psy522 86 LPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKD 119 (131)
Q Consensus 86 ~P~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~ 119 (131)
+++.++..++++..+.. ..+. +..+..++..+.
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~ 232 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAA 232 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHH
Confidence 99999999999987642 2222 223455666555
No 63
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.41 E-value=3.6e-06 Score=60.54 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.|++|||+|.+.. ...+.++..++. ..+++++|.+|+.++.+.+.+++ |+. .+.+++|+
T Consensus 108 ~~kvviIdead~l~~--------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~ 168 (334)
T 1a5t_A 108 GAKVVWVTDAALLTD--------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-LHYLAPPP 168 (334)
T ss_dssp SCEEEEESCGGGBCH--------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCC
T ss_pred CcEEEEECchhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCC
Confidence 468999999999842 133456666664 34568888899999999999999 885 79999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHH
Q psy522 89 EKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~ 127 (131)
.++..++++... .. .+..+..++..+.|- ++...
T Consensus 169 ~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~-~r~a~ 202 (334)
T 1a5t_A 169 EQYAVTWLSREV---TM-SQDALLAALRLSAGS-PGAAL 202 (334)
T ss_dssp HHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC-HHHHH
T ss_pred HHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC-HHHHH
Confidence 999999998775 22 223456677776663 44433
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=7.5e-07 Score=62.97 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=67.9
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.||+|||+|.+... ....++..++. ..+.+.+|.+||.+..+++.+.+ |+. .+.+++|+
T Consensus 107 ~~~viiiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~ 167 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG--------------AQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLS 167 (323)
T ss_dssp CCEEEEEESGGGSCHH--------------HHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCC
T ss_pred CceEEEEECcccCCHH--------------HHHHHHHHHhc--cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCC
Confidence 4789999999998432 12223333332 23567888888999999999999 876 89999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCC
Q psy522 89 EKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 122 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s 122 (131)
.++..++++..+...+.. .+..+..++..+.|-.
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 202 (323)
T 1sxj_B 168 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDM 202 (323)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 999999999887643333 2334667777776643
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.38 E-value=6.4e-08 Score=63.07 Aligned_cols=68 Identities=29% Similarity=0.394 Sum_probs=46.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC-----cccccccCCCccceEEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRPGRIDRKIE 83 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~-----~id~~l~~~grf~~~i~ 83 (131)
.|.+|+|||+|.+...+...+.. ......+..++ ...++.+|++||.+. .+++++++ ||+ .+.
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~--~~~~~~l~~~~-------~~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~ 182 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGA--LDAGNILKPML-------ARGELRCIGATTVSEYRQFIEKDKALER--RFQ-QIL 182 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTS--CCTHHHHHHHH-------HTTCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEE
T ss_pred CceEEEEeCHHHhcccccccccc--hHHHHHHHHHH-------hcCCeeEEEecCHHHHHHHHhccHHHHH--hcC-ccc
Confidence 68999999999998655311111 11222333333 235678899998765 68999999 998 499
Q ss_pred eCCCC
Q psy522 84 FPLPD 88 (131)
Q Consensus 84 ~~~P~ 88 (131)
+++|+
T Consensus 183 i~~p~ 187 (187)
T 2p65_A 183 VEQPS 187 (187)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 99986
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.38 E-value=5.7e-07 Score=71.04 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=73.7
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC--C-------CCCeEEEeeCCCCC-------
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD--S-------RGDVKVIMATNRIE------- 66 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-------~~~v~vi~ttn~~~------- 66 (131)
...+...++||||||+|.+- . .+.+.++..++.-. . -.++++|+|||...
T Consensus 551 ~~~~~~~~~vl~lDEi~~~~-----------~---~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~ 616 (758)
T 1r6b_X 551 DAVIKHPHAVLLLDEIEKAH-----------P---DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKS 616 (758)
T ss_dssp HHHHHCSSEEEEEETGGGSC-----------H---HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC------
T ss_pred HHHHhCCCcEEEEeCccccC-----------H---HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcc
Confidence 34456668999999999862 1 23444444444210 0 14588999999754
Q ss_pred ------------------cccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC-------C--CC-CcccHHHHHHHc
Q psy522 67 ------------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------T--LA-EDVNLQELIMAK 118 (131)
Q Consensus 67 ------------------~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~-------~--~~-~~~~~~~la~~t 118 (131)
.+++++++ ||+..|.+++|+.+++..|++.++... . +. .+.-+..+++..
T Consensus 617 ~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 617 IGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp -----------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhC
Confidence 67888998 999999999999999999999987632 1 11 122255566543
Q ss_pred --CCCCHHHHHHhh
Q psy522 119 --DDLSGADIKAIC 130 (131)
Q Consensus 119 --~g~s~~di~~l~ 130 (131)
.++..+++..++
T Consensus 695 ~~~~~g~R~l~~~i 708 (758)
T 1r6b_X 695 YDRAMGARPMARVI 708 (758)
T ss_dssp CBTTTBTTTHHHHH
T ss_pred CCcCCCchHHHHHH
Confidence 345566666553
No 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1.9e-06 Score=61.01 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=68.6
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..+.+|+|||+|.+... ....++..++. ....+.+|++||.+..+++.+.+ |+. .+.+++|
T Consensus 109 ~~~~vliiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l 169 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD--------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPL 169 (327)
T ss_dssp CSCEEEEEETGGGSCHH--------------HHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCC
T ss_pred CCCeEEEEeCCCcCCHH--------------HHHHHHHHHHh--cCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCC
Confidence 35789999999998421 12233333332 23467888899999999999999 886 8999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 88 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+.++...+++..+...+.. .+..+..++..+.|
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 9999999999988765543 23346667777766
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.3e-06 Score=61.25 Aligned_cols=94 Identities=14% Similarity=0.227 Sum_probs=67.4
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.||+|||+|.+... ....++..++.. .....+|.+||.+..+++.+++ |+. .+.+++|+
T Consensus 133 ~~~vliiDE~~~l~~~--------------~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~ 193 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD--------------AQSALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALD 193 (353)
T ss_dssp SCEEEEETTGGGSCHH--------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCC
T ss_pred CceEEEEECCCccCHH--------------HHHHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCC
Confidence 4569999999998432 122333334432 2346677788999999999999 986 89999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCC
Q psy522 89 EKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 121 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 121 (131)
.++...+++..+...+.. .+..+..++..+.|.
T Consensus 194 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~ 227 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGD 227 (353)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 999999999987655433 233467777777764
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.2e-06 Score=62.89 Aligned_cols=79 Identities=6% Similarity=0.130 Sum_probs=58.9
Q ss_pred hcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc----ccccccCCCccc-eE
Q psy522 7 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET----LDPALIRPGRID-RK 81 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~----id~~l~~~grf~-~~ 81 (131)
...|.||+|||+|.+. .+ ..+..++.... ....++++|+++|..+. +++++++ ||+ ..
T Consensus 130 ~~~~~ii~lDE~d~l~-~q------------~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~ 192 (318)
T 3te6_A 130 KKRKTLILIQNPENLL-SE------------KILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTE 192 (318)
T ss_dssp GSCEEEEEEECCSSSC-CT------------HHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEE
T ss_pred cCCceEEEEecHHHhh-cc------------hHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCCceE
Confidence 4568999999999997 11 23444443222 24467999999998754 5667778 887 68
Q ss_pred EEeCCCCHHHHHHHHHHHhcC
Q psy522 82 IEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~ 102 (131)
|.|++.+.++-.+|++..+..
T Consensus 193 i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 193 IKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp EECCCCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988765
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.35 E-value=1.1e-06 Score=62.76 Aligned_cols=79 Identities=19% Similarity=0.332 Sum_probs=55.5
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh----cC--CCCCCCeEEEeeCCCCC-----cccccccCCCccc
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL----DG--FDSRGDVKVIMATNRIE-----TLDPALIRPGRID 79 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~--~~~~~~v~vi~ttn~~~-----~id~~l~~~grf~ 79 (131)
+|+||||+|.+-.. ....+...++.- .+ .....++++|+|+|..+ .+++++++ ||+
T Consensus 111 ~vl~iDEi~~~~~~-----------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~ 177 (331)
T 2r44_A 111 NFILADEVNRSPAK-----------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFM 177 (331)
T ss_dssp SEEEEETGGGSCHH-----------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSS
T ss_pred cEEEEEccccCCHH-----------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--hee
Confidence 79999999986321 122333333321 01 11234678888888433 38999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcC
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
..+.++.|+.++|.+|++..+..
T Consensus 178 ~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 178 MKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEEEcCCCCHHHHHHHHHhcccc
Confidence 89999999999999999998765
No 71
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.34 E-value=3.1e-06 Score=60.60 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=53.5
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH----hcCCCC----CCCeEEEeeCCCC-CcccccccCCCccce
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ----LDGFDS----RGDVKVIMATNRI-ETLDPALIRPGRIDR 80 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~----~~~v~vi~ttn~~-~~id~~l~~~grf~~ 80 (131)
+.+|||||+|.+... ....+..+++. +..... ..++++|+|||.. ..+++++++ ||+.
T Consensus 145 ~~vl~iDEi~~l~~~-----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~ 211 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH-----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGL 211 (350)
T ss_dssp TEEEEETTGGGSCHH-----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSE
T ss_pred CCEEEEeChhhCCHH-----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcce
Confidence 689999999987422 12233333332 111000 1368999999964 489999999 9999
Q ss_pred EEEeCCC-CHHHHHHHHHH
Q psy522 81 KIEFPLP-DEKTKRRIFNI 98 (131)
Q Consensus 81 ~i~~~~P-~~~~R~~il~~ 98 (131)
.+.+++| +.++|.+|+++
T Consensus 212 ~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp EEECCCCCSHHHHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHH
Confidence 9999999 78888888876
No 72
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.33 E-value=1.6e-06 Score=61.74 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=64.7
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.+.||+|||+|.+... .....+..+++.. .+++.+|+|||.+..+++++++ ||. .+.+++|+
T Consensus 105 ~~~vliiDEi~~l~~~----------~~~~~L~~~le~~-----~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~ 166 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLA----------ESQRHLRSFMEAY-----SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPT 166 (324)
T ss_dssp CEEEEEEESCCCGGGH----------HHHHHHHHHHHHH-----GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCC
T ss_pred CCeEEEEECCcccCcH----------HHHHHHHHHHHhC-----CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCC
Confidence 5789999999998511 1122333333322 2457889999999999999999 995 79999999
Q ss_pred HHHHHHHHHHHhc-------CCCCC-Cc-ccHHHHHHHcCCC
Q psy522 89 EKTKRRIFNIHTS-------RMTLA-ED-VNLQELIMAKDDL 121 (131)
Q Consensus 89 ~~~R~~il~~~l~-------~~~~~-~~-~~~~~la~~t~g~ 121 (131)
.++|.++++.++. ..+.. .+ ..+..++..+.|-
T Consensus 167 ~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 167 DEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 9998777655432 12222 22 3466777776664
No 73
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.30 E-value=1.3e-06 Score=65.33 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=60.9
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeC--CCCCcccccccCCCccceEEEeC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFP 85 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~tt--n~~~~id~~l~~~grf~~~i~~~ 85 (131)
..+.||||||+|.+.... ...++..++. +.+++|++| |....+++++++ |+. .+.++
T Consensus 105 ~~~~iLfIDEI~~l~~~~--------------q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~ 163 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQ--------------QDAFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLK 163 (447)
T ss_dssp TCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECC
T ss_pred CCCcEEEEeChhhhCHHH--------------HHHHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeC
Confidence 468999999999984332 1223444432 456666655 345689999999 986 78899
Q ss_pred CCCHHHHHHHHHHHhcCCC-------CC-CcccHHHHHHHcCC
Q psy522 86 LPDEKTKRRIFNIHTSRMT-------LA-EDVNLQELIMAKDD 120 (131)
Q Consensus 86 ~P~~~~R~~il~~~l~~~~-------~~-~~~~~~~la~~t~g 120 (131)
+|+.++...+++..+.... .. .+..+..++..+.|
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 9999999999999987621 11 22235666666555
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.29 E-value=1.6e-06 Score=62.82 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=66.7
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC--CCCeEEEeeCCCC---CcccccccCCCccce-E
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRI---ETLDPALIRPGRIDR-K 81 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~vi~ttn~~---~~id~~l~~~grf~~-~ 81 (131)
..|.||+|||+|.+ . . ..+..++..+..... ..++.+|++||.+ +.+++.+.+ ||.. .
T Consensus 124 ~~~~vlilDE~~~l--~---------~---~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~ 187 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL--A---------P---DILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYV 187 (389)
T ss_dssp TCCEEEEEETGGGS--C---------H---HHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCE
T ss_pred CCeEEEEEECcccc--c---------h---HHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCce
Confidence 45899999999998 1 1 234444444443322 1478889999887 667888888 8875 8
Q ss_pred EEeCCCCHHHHHHHHHHHhcC---CCCCCcccHHHHHHHc
Q psy522 82 IEFPLPDEKTKRRIFNIHTSR---MTLAEDVNLQELIMAK 118 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~---~~~~~~~~~~~la~~t 118 (131)
+.+++++.++..++++..+.. ...-.+..+..++..+
T Consensus 188 i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 188 IRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp EECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 999999999999999888753 1111333467788888
No 75
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=3.3e-06 Score=64.15 Aligned_cols=96 Identities=14% Similarity=0.230 Sum_probs=60.9
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P 87 (131)
..+.||+|||+|.+..... .....+..++.. ...++++++++.....+++ +. |+...+.+++|
T Consensus 147 ~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~-----~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~ 209 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRK-----TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRP 209 (516)
T ss_dssp TTSEEEEECSGGGCCTTST--------THHHHHHHHHHH-----CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCC
T ss_pred CCCeEEEEECCCccchhhH--------HHHHHHHHHHHh-----cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCC
Confidence 5689999999999975431 112233333322 2334666665555455543 44 44568999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 88 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 88 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+.+++.++++..+...+.. .+..+..+++.+.|
T Consensus 210 ~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 210 DANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999998876543322 22347788888766
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.16 E-value=4.1e-06 Score=62.69 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=62.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEee---------CC---CCCcccccccCCCc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA---------TN---RIETLDPALIRPGR 77 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~t---------tn---~~~~id~~l~~~gr 77 (131)
|.|++|||+|.+- ....+.++..+... ..++++++| ++ .++.+++.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999983 13556667777653 233655566 43 37889999999 9
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHc
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK 118 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t 118 (131)
|.. +.+++++.++..++++..+...+.. .+..+..++..+
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIG 398 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 976 6999999999999998876533222 222345555554
No 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.15 E-value=1.2e-05 Score=57.72 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=56.8
Q ss_pred CeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCCHHHHHHh
Q psy522 55 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 55 ~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l 129 (131)
.+.++++|+.+..+++.+++ ||...+.+++|+.++..++++...+..+.. .+..+..++..+.|. ++++..+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~l 222 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRL 222 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHH
Confidence 46788899999999999999 999889999999999999999887654443 233477788888774 4555443
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.15 E-value=2.5e-06 Score=68.35 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=72.6
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC---------CCCCeEEEeeCCCC----------
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD---------SRGDVKVIMATNRI---------- 65 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~v~vi~ttn~~---------- 65 (131)
.+...++||||||+|.+-. .+.+.++..++.-. .-.++++|+|||..
T Consensus 656 ~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~ 721 (854)
T 1qvr_A 656 VRRRPYSVILFDEIEKAHP--------------DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQK 721 (854)
T ss_dssp HHHCSSEEEEESSGGGSCH--------------HHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHT
T ss_pred HHhCCCeEEEEecccccCH--------------HHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhccc
Confidence 4455679999999997621 34555555555321 01368899999962
Q ss_pred ----------------CcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC---------CCC-CcccHHHHHHHcC
Q psy522 66 ----------------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---------TLA-EDVNLQELIMAKD 119 (131)
Q Consensus 66 ----------------~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~---------~~~-~~~~~~~la~~t~ 119 (131)
..+.++|+. ||+..+.+.+|+.++...|+++++... ... .+.-+..++...-
T Consensus 722 ~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 722 GWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp TCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCC
Confidence 234567777 999999999999999999999887521 111 1223555666544
Q ss_pred --CCCHHHHHHhh
Q psy522 120 --DLSGADIKAIC 130 (131)
Q Consensus 120 --g~s~~di~~l~ 130 (131)
.+..++|+.++
T Consensus 800 ~~~gn~R~L~~~i 812 (854)
T 1qvr_A 800 DPVFGARPLRRVI 812 (854)
T ss_dssp BTTTBTSTHHHHH
T ss_pred CCCCChHHHHHHH
Confidence 56667776654
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.09 E-value=6.4e-06 Score=63.67 Aligned_cols=80 Identities=28% Similarity=0.310 Sum_probs=54.8
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc------CC--CCCCCeEEEeeCCCCC-------------cc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD------GF--DSRGDVKVIMATNRIE-------------TL 68 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~--~~~~~v~vi~ttn~~~-------------~i 68 (131)
.+|+||||+|.+-.. ....+.++++.-. +. ....++.+|+|||.++ .+
T Consensus 392 ~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l 460 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINL 460 (595)
T ss_dssp SSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCS
T ss_pred CCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCC
Confidence 489999999997432 1233333433210 11 1124688999999876 89
Q ss_pred cccccCCCccc-eEEEeCCCCHHHHHHHHHHHhcCC
Q psy522 69 DPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 69 d~~l~~~grf~-~~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
++++++ ||| ..+..+.|+.+ ...|.++.+...
T Consensus 461 ~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 461 PPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred CHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999999 998 45666778888 888888887643
No 80
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.02 E-value=1.3e-05 Score=58.34 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=24.0
Q ss_pred ccccccCCCccceEEEeCCCCHHHHHHHHH
Q psy522 68 LDPALIRPGRIDRKIEFPLPDEKTKRRIFN 97 (131)
Q Consensus 68 id~~l~~~grf~~~i~~~~P~~~~R~~il~ 97 (131)
+.+.+.+ ||+..+.+++++.++...++.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHh
Confidence 4567777 898899999999999999886
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.96 E-value=1.9e-05 Score=69.56 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=61.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCC--------CCeEEEeeCCCCC-----cccccccCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--------GDVKVIMATNRIE-----TLDPALIRP 75 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~v~vi~ttn~~~-----~id~~l~~~ 75 (131)
+++||||||+|....++. ........+.++++. +++... .++.+|||||.|. .|+++++|
T Consensus 1336 k~~VlFiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR- 1408 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR- 1408 (2695)
T ss_dssp SCEEEEEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred ceEEEEeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh-
Confidence 458999999987433321 122344566666632 222111 3589999999985 89999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcC
Q psy522 76 GRIDRKIEFPLPDEKTKRRIFNIHTSR 102 (131)
Q Consensus 76 grf~~~i~~~~P~~~~R~~il~~~l~~ 102 (131)
|| ..+.++.|+.+++..|+..++..
T Consensus 1409 -rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1409 -HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp -TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred -ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 99 78999999999999999888753
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.95 E-value=1.5e-05 Score=60.45 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=48.1
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-------C-CCCCCeEEEeeCCC-CC--cccccccCCCc
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-------F-DSRGDVKVIMATNR-IE--TLDPALIRPGR 77 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~-~~~~~v~vi~ttn~-~~--~id~~l~~~gr 77 (131)
.++||||||++.+-+ .....++..|+. . ...+..++|+|||. |+ ...+++++ |
T Consensus 109 ~~~IL~IDEI~r~~~--------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--R 172 (500)
T 3nbx_X 109 EAEIVFLDEIWKAGP--------------AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--R 172 (500)
T ss_dssp GCSEEEEESGGGCCH--------------HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--T
T ss_pred cceeeeHHhHhhhcH--------------HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--H
Confidence 467999999976421 233334444431 1 11123355667774 22 13358999 9
Q ss_pred cceEEEeCCCCH-HHHHHHHHHHh
Q psy522 78 IDRKIEFPLPDE-KTKRRIFNIHT 100 (131)
Q Consensus 78 f~~~i~~~~P~~-~~R~~il~~~l 100 (131)
|...+.+++|+. +++.+|++...
T Consensus 173 F~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 173 MLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhhhhhHHHHHhccc
Confidence 999999999976 78889987654
No 83
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=6.2e-05 Score=53.97 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=63.6
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
+.|+++||+|.+... ....++..++.. ...+.+|.+||.+..+.+.+++ |+. .+.+++++.
T Consensus 111 ~~viiiDe~~~l~~~--------------~~~~L~~~le~~--~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~ 171 (340)
T 1sxj_C 111 FKLIILDEADAMTNA--------------AQNALRRVIERY--TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQ 171 (340)
T ss_dssp CEEEEETTGGGSCHH--------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCH
T ss_pred ceEEEEeCCCCCCHH--------------HHHHHHHHHhcC--CCCeEEEEEecCccccchhHHh--hce-eEeccCCCH
Confidence 689999999987421 122233334432 2456777888999999999999 986 789999999
Q ss_pred HHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 90 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 90 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
++..+.+...+...+.. .+..+..++..+.|
T Consensus 172 ~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 172 EAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp HHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999998888544332 22235556665554
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.74 E-value=8.3e-05 Score=54.13 Aligned_cols=102 Identities=12% Similarity=0.161 Sum_probs=63.5
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC-CC--CCeEEEeeCCCCC---ccc---ccccCCCcc
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD-SR--GDVKVIMATNRIE---TLD---PALIRPGRI 78 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~v~vi~ttn~~~---~id---~~l~~~grf 78 (131)
..|.||+|||+|.+...+. ... ..+..++..+.... .. .++.+|++|+.++ .++ +.+.+ +|
T Consensus 137 ~~~~llvlDe~~~l~~~~~-----~~~---~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~ 206 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPR-----IAA---EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QI 206 (412)
T ss_dssp TCEEEEEEESTHHHHSCTT-----SCH---HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TC
T ss_pred CCeEEEEEeCHHHHhhccC-----cch---HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hc
Confidence 4689999999999864310 011 12222222222221 12 5788888887655 344 56667 66
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCC---CCCcccHHHHHHHcC
Q psy522 79 DRKIEFPLPDEKTKRRIFNIHTSRMT---LAEDVNLQELIMAKD 119 (131)
Q Consensus 79 ~~~i~~~~P~~~~R~~il~~~l~~~~---~~~~~~~~~la~~t~ 119 (131)
...+.+++++.++..+++...+.... ...+..+..++..+.
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 66699999999999999987654211 112334667788888
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=6.1e-05 Score=53.65 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=55.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCCH
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 89 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~ 89 (131)
.-|++|||+|.+-. ...+.++..++. ..+.+++|.+|+.++.+.+.+++ | .+.+++|+.
T Consensus 83 ~kvviIdead~lt~--------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~ 141 (305)
T 2gno_A 83 RKYVIVHDCERMTQ--------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVP 141 (305)
T ss_dssp SEEEEETTGGGBCH--------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCC
T ss_pred ceEEEeccHHHhCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCH
Confidence 46999999999842 234456666664 34567888888899999999999 8 799999999
Q ss_pred HHHHHHHHHHh
Q psy522 90 KTKRRIFNIHT 100 (131)
Q Consensus 90 ~~R~~il~~~l 100 (131)
++-.++++..+
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999888775
No 86
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.65 E-value=0.00051 Score=51.38 Aligned_cols=84 Identities=27% Similarity=0.361 Sum_probs=58.2
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC--------CCCCeEEEeeC----CCCCcccccccCCCc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD--------SRGDVKVIMAT----NRIETLDPALIRPGR 77 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~v~vi~tt----n~~~~id~~l~~~gr 77 (131)
..|+++||+|++....++ .........+...+|..+++-. ..+++++|+|. +.|..+-|.++. |
T Consensus 251 ~~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R 326 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--R 326 (444)
T ss_dssp HCEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--T
T ss_pred CCeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--c
Confidence 358999999999866432 1222222234556677677521 34578899886 244545577888 9
Q ss_pred cceEEEeCCCCHHHHHHHHH
Q psy522 78 IDRKIEFPLPDEKTKRRIFN 97 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~ 97 (131)
|...+.++..+.++...|+.
T Consensus 327 ~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 327 LPIRVELTALSAADFERILT 346 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHH
Confidence 99999999999999999983
No 87
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.16 E-value=0.0013 Score=44.00 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=49.5
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
.++||+|||++.+++.+..... .. .++..+..- .....-+|.+|+.+..++.+++. |++.+++++.|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e--~~-------rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSK--IP-------ENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCC--CC-------HHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCccccch--hH-------HHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 4789999999999866522111 11 133344332 23455667777889999999998 999999999876
Q ss_pred HHHH
Q psy522 89 EKTK 92 (131)
Q Consensus 89 ~~~R 92 (131)
...|
T Consensus 155 ~~~~ 158 (199)
T 2r2a_A 155 MGMR 158 (199)
T ss_dssp SCCE
T ss_pred cCcc
Confidence 5544
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.16 E-value=0.013 Score=41.35 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=61.1
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc-----ccc--CCCccce
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP-----ALI--RPGRIDR 80 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~-----~l~--~~grf~~ 80 (131)
..|.+|+|||++.+.... ..........+..+... .+++.+|.|++....+.. ... -.||+..
T Consensus 127 ~~~~vlvlDe~~~~~~~~----~~~~~~~~~~L~~~~~~------~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~ 196 (350)
T 2qen_A 127 LGEFIVAFDEAQYLRFYG----SRGGKELLALFAYAYDS------LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAG 196 (350)
T ss_dssp HSCEEEEEETGGGGGGBT----TTTTHHHHHHHHHHHHH------CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCE
T ss_pred cCCEEEEEeCHHHHhccC----ccchhhHHHHHHHHHHh------cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccc
Confidence 349999999999986411 00112223333333322 135556655543211111 101 1247767
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCCCC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 122 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s 122 (131)
.+.+++.+.++-.+++...+...+.. ....+..+...|.|+.
T Consensus 197 ~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 197 EVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 89999999999999998877544333 2335677888888874
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.12 E-value=0.0048 Score=43.67 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=59.0
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccccc-----c--cCCCccceE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA-----L--IRPGRIDRK 81 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~-----l--~~~grf~~~ 81 (131)
.|.+|+|||++.+.... .. . ....+..+... ..++.+|.|++....+... . .-.||+...
T Consensus 137 ~~~vlvlDe~~~~~~~~---~~-~---~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~ 203 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLR---GV-N---LLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFST 203 (357)
T ss_dssp SCEEEEEETGGGGGGCT---TC-C---CHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEE
T ss_pred CCeEEEEECHHHhhccC---ch-h---HHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccce
Confidence 48999999999986421 01 1 12233333322 1355666666543222211 0 012466678
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCC
Q psy522 82 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 122 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 122 (131)
+.+++.+.++-.+++...+...+...+ +...+...|.|+.
T Consensus 204 i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P 243 (357)
T 2fna_A 204 VELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIP 243 (357)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCH
Confidence 999999999999999887653232222 2377888888873
No 90
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.93 E-value=0.0012 Score=46.70 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=42.3
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC--C----CCCCCeEEEeeCCCC-C------cccccccCCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG--F----DSRGDVKVIMATNRI-E------TLDPALIRPG 76 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~----~~~~~v~vi~ttn~~-~------~id~~l~~~g 76 (131)
+.+|||||+|.+-.. ....+..+++.-.- + .....+.+|+|||.. . .+++.+..
T Consensus 97 ~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~-- 163 (304)
T 1ojl_A 97 GGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY-- 163 (304)
T ss_dssp TSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--
T ss_pred CCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--
Confidence 579999999998421 22233333332110 0 011357889999864 1 23455555
Q ss_pred ccc-eEEEeCCCC--HHHHHHHHHHHhc
Q psy522 77 RID-RKIEFPLPD--EKTKRRIFNIHTS 101 (131)
Q Consensus 77 rf~-~~i~~~~P~--~~~R~~il~~~l~ 101 (131)
||. ..+.+|+.. .++...++++++.
T Consensus 164 Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 164 RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 663 335555544 3455556766654
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.91 E-value=0.00043 Score=59.13 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=49.3
Q ss_pred CHHHHHhcCCeEEEecccccccCcCC---CCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 1 LFRVAEEHAPSIVFIDEIDAVGTKRY---DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 1 vF~~A~~~~p~ii~iDe~d~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+|.+|+...|++|++|++|++++.+. ..++.+..-..+.+++++..++++....+|+||+|....+.+.
T Consensus 1152 ~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1152 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 1223 (1706)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEECEEECTT
T ss_pred HHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEeccccccch
Confidence 46789999999999999999999843 2222222233456889999999877777888885554445554
No 92
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.63 E-value=0.0019 Score=44.45 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=45.5
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhc--CC----CCCCCeEEEeeCCCC-C------cccccccCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GF----DSRGDVKVIMATNRI-E------TLDPALIRP 75 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~----~~~~~v~vi~ttn~~-~------~id~~l~~~ 75 (131)
.+.+|||||+|.+-.. ....+..+++.-. .. ....++.+|+|||.+ . .+++.+.+
T Consensus 100 ~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~- 167 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD- 167 (265)
T ss_dssp TTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH-
T ss_pred CCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH-
Confidence 4689999999988421 2233334443210 00 011357888888863 2 36778888
Q ss_pred Cccc-eEEEeCCCCH--HHHHHHHHHHhc
Q psy522 76 GRID-RKIEFPLPDE--KTKRRIFNIHTS 101 (131)
Q Consensus 76 grf~-~~i~~~~P~~--~~R~~il~~~l~ 101 (131)
||. ..+.+|+... ++...+++++++
T Consensus 168 -Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 168 -ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp -HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred -hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 885 3555555543 455556555543
No 93
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.63 E-value=0.0042 Score=48.02 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=44.7
Q ss_pred CeEEEeeCCCC--CcccccccCCCccc---eEEEeCC--C-CHHHHHHHHHHHhcCCC-----CC-CcccHHHHHHHc--
Q psy522 55 DVKVIMATNRI--ETLDPALIRPGRID---RKIEFPL--P-DEKTKRRIFNIHTSRMT-----LA-EDVNLQELIMAK-- 118 (131)
Q Consensus 55 ~v~vi~ttn~~--~~id~~l~~~grf~---~~i~~~~--P-~~~~R~~il~~~l~~~~-----~~-~~~~~~~la~~t-- 118 (131)
++.+|+|||.. +.+++++++ ||. ..+.++. + +.+....+++.+.+... .. .+..+..+....
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r 329 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQK 329 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhh
Confidence 57899999975 689999999 996 5666653 2 45556666655433211 11 222344454432
Q ss_pred -CCC------CHHHHHHhh
Q psy522 119 -DDL------SGADIKAIC 130 (131)
Q Consensus 119 -~g~------s~~di~~l~ 130 (131)
.|- +.+++..++
T Consensus 330 ~~g~r~~l~~~~R~l~~ll 348 (604)
T 3k1j_A 330 RAGRKGHLTLRLRDLGGIV 348 (604)
T ss_dssp TTCSTTEEECCHHHHHHHH
T ss_pred hhccccccccCHHHHHHHH
Confidence 552 677777665
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.83 E-value=0.037 Score=39.42 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=57.2
Q ss_pred CeEEEeccccc-ccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC-----CCcccccccCCCccceEEE
Q psy522 10 PSIVFIDEIDA-VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR-----IETLDPALIRPGRIDRKIE 83 (131)
Q Consensus 10 p~ii~iDe~d~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~-----~~~id~~l~~~grf~~~i~ 83 (131)
.-||+|||+|. +..+ ..+.++..+... ..+.++++.+++. ...+.+.+.+ |. ..+.
T Consensus 77 ~kvvii~~~~~kl~~~--------------~~~aLl~~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~ 138 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAA--------------INEQLLTLTGLL-HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVT 138 (343)
T ss_dssp CEEEEEECCSSCCCTT--------------HHHHHHHHHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEE
T ss_pred CeEEEEECCCCCCChH--------------HHHHHHHHHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEE
Confidence 56899999887 5211 233355555542 2233444455442 3467888888 66 4789
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHcCC
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 120 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 120 (131)
+.+|+.++....++..++..+.. ....+..++..+.|
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 99999999998998888766544 22234445554443
No 95
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.31 E-value=0.04 Score=34.31 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC-CCc----ccccccCCCcc-ceEE
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR-IET----LDPALIRPGRI-DRKI 82 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~-~~~----id~~l~~~grf-~~~i 82 (131)
.+.+|||||+|.+-.. ....+..+++.. ...++.+|+|||. ++. +++.+.. || ...|
T Consensus 75 ~~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~----~~~~~~iI~~tn~~~~~~~~~~~~~L~~--rl~~~~i 137 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRN-----------IQTGITFIIGKA----ERCRVRVIASCSYAAGSDGISCEEKLAG--LFSESVV 137 (143)
T ss_dssp TTSEEEEEECTTCCHH-----------HHHHHHHHHHHH----TTTTCEEEEEEEECTTTC--CHHHHHHH--HSSSEEE
T ss_pred CCCeEEEeChHHCCHH-----------HHHHHHHHHHhC----CCCCEEEEEecCCCHHHHHhCccHHHHH--HhcCcEE
Confidence 3589999999998432 122333344332 1345778888884 333 3334444 43 3456
Q ss_pred EeCC
Q psy522 83 EFPL 86 (131)
Q Consensus 83 ~~~~ 86 (131)
.+|+
T Consensus 138 ~lPp 141 (143)
T 3co5_A 138 RIPP 141 (143)
T ss_dssp EECC
T ss_pred eCCC
Confidence 6665
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.85 E-value=0.095 Score=47.72 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=58.0
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-------CCCeEEEeeCCCC-----CcccccccCCCc
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-------RGDVKVIMATNRI-----ETLDPALIRPGR 77 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~v~vi~ttn~~-----~~id~~l~~~gr 77 (131)
..|+|+||++---.+ ....+.....+.+++..-.-+.. -.++.+|||+|.| ..++++++| |
T Consensus 1375 ~~VlFiDDiNmp~~D-----~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~ 1447 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTD-----KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--H 1447 (3245)
T ss_dssp EEEEEETTTTCCCCC-----TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred eEEEEecccCCCCcc-----ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--h
Confidence 479999999753222 12223345666777654211111 1468899999977 469999999 9
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhc
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
|. .++++.|+.++-..|+..++.
T Consensus 1448 F~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1448 AP-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CC-EEECCCCCHHHHHHHHHHHHH
T ss_pred ce-EEEeCCCCHHHHHHHHHHHHH
Confidence 96 699999999999999876654
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=94.52 E-value=0.036 Score=41.96 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=39.7
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHH----hcCCCCCCCeEEEeeCCCCC-----------cccccccCC
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ----LDGFDSRGDVKVIMATNRIE-----------TLDPALIRP 75 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~v~vi~ttn~~~-----------~id~~l~~~ 75 (131)
.++|+||++.+-.+ ....+.+.+++ +.+..-..++.||||+|-.+ .+++++++
T Consensus 302 Gvl~lDEIn~~~~~-----------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD- 369 (506)
T 3f8t_A 302 GILAVDHLEGAPEP-----------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS- 369 (506)
T ss_dssp SEEEEECCTTCCHH-----------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT-
T ss_pred CeeehHhhhhCCHH-----------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh-
Confidence 78999999886321 22333333332 12221124689999999754 78899999
Q ss_pred CccceEEE-eCCCCHHH
Q psy522 76 GRIDRKIE-FPLPDEKT 91 (131)
Q Consensus 76 grf~~~i~-~~~P~~~~ 91 (131)
|||..+. ++.|+.+.
T Consensus 370 -RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 370 -HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp -TCSEEEETTC------
T ss_pred -heeeEEEecCCCChhH
Confidence 9986443 45565443
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.04 E-value=0.013 Score=42.22 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=28.7
Q ss_pred EEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccc
Q psy522 12 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPAL 72 (131)
Q Consensus 12 ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l 72 (131)
+|+||+++.+............ ..+.+.+++..+.++....++.+|+++| +...++++
T Consensus 185 LLVIDsI~aL~~~~~~~s~~G~--v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 185 VIVIDSLKNVIGAAGGNTTSGG--ISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp EEEEECCTTTC-------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred EEEEecccccccccccccccch--HHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 9999999998654422111000 0122333444443333344567888888 56666554
No 99
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.73 E-value=0.33 Score=35.19 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=50.1
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccc--------cccCCCccc
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP--------ALIRPGRID 79 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~--------~l~~~grf~ 79 (131)
..|.++++||+..++... .......+..++.... +.++.++.+|+++..+.. +++. ..+
T Consensus 261 ~~~~~i~iDEa~~~~~~~-------~~~~~~~l~~~~~~~R----k~g~~~~~~tQ~~~d~~~~~~~~~~~~il~--n~~ 327 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQ-------TPQAIAFLRDTSKRIR----KYNGSLIVISQNVIDFLAPEVQRYGQALLD--NPT 327 (392)
T ss_dssp CTTCEEEETTGGGGCCTT-------CTHHHHHHHHHHHHGG----GGTCEEEEEESCGGGGGSTTTHHHHHHHHH--SCS
T ss_pred CccEEEEEecHHHHhCcC-------chHHHHHHHHHHHHhh----hhCeEEEEEcCCHHHhhChhhHHHHHHHHH--hhh
Confidence 458999999999998632 1123345556665553 345678888898888864 4555 677
Q ss_pred eEEEeCCCCHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFN 97 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~ 97 (131)
..|.++.+. .++..+.+
T Consensus 328 ~~i~l~~~~-~~~~~~~~ 344 (392)
T 4ag6_A 328 YKLLLAQGE-KDLEAITT 344 (392)
T ss_dssp EEEECSCCH-HHHHHHHH
T ss_pred hhheeCCCh-hhHHHHHH
Confidence 888888764 44444433
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.66 E-value=0.028 Score=35.49 Aligned_cols=61 Identities=13% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCe-EEEeeCCCCCccc--ccccCCCccceEEEeC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV-KVIMATNRIETLD--PALIRPGRIDRKIEFP 85 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v-~vi~ttn~~~~id--~~l~~~grf~~~i~~~ 85 (131)
+|.+|+|||++.+.... ...+..+++.+. ..+.. ++|+|...|..+. +.+.+ |+..-..+.
T Consensus 83 ~~~lLilDE~~~~~~~~-----------~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~~ 146 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-----------QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVYE 146 (149)
T ss_dssp GCSEEEEESTTCCCSHH-----------HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEECC
T ss_pred CCCEEEEeCccccChHH-----------HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeEE
Confidence 57899999998753221 123333333322 23333 5554444565554 77888 876554443
No 101
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.88 E-value=0.14 Score=39.57 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=54.2
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC--cccccccCCCccceEEEeCCC
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE--TLDPALIRPGRIDRKIEFPLP 87 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~--~id~~l~~~grf~~~i~~~~P 87 (131)
+-+|+|||+..++.... ......+..+.. ....-++.+|.+|++|. .++..++. -|..+|.+...
T Consensus 344 ~ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar----~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-------KKVEELIARIAQ----KARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHTC-------HHHHHHHHHHHH----HCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhhh-------HHHHHHHHHHHH----HHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 36899999998875321 122233333332 22445799999999988 89988888 89999999999
Q ss_pred CHHHHHHHHH
Q psy522 88 DEKTKRRIFN 97 (131)
Q Consensus 88 ~~~~R~~il~ 97 (131)
+..+...++.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9988888873
No 102
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.70 E-value=0.052 Score=39.71 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=43.9
Q ss_pred cCCeEEEecccccccC-cCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCC
Q psy522 8 HAPSIVFIDEIDAVGT-KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 86 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~ 86 (131)
.+..++++||++.+.. .+.-. .... . .....+.+.+++ .+.|+.+||+++.+ +++.+||+++..++...
T Consensus 215 ~q~~~~l~dd~~~~~~~~r~l~-~~~~--~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 215 IDQFLVVFEDVKGTGGESRDLP-SGQG--I-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCSCEEETTCCCSTTTTTTCC-CCSH--H-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred cchhHHHHHHHHHHHHHHhhcc-ccCc--c-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 3456789999999875 22111 1111 1 122334444554 34578889999999 79999999987776644
No 103
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.19 E-value=0.18 Score=31.25 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 64 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~ 64 (131)
...+|||||+|.+-.. .... ++..+.. ...++.+|+|||.
T Consensus 76 ~~g~l~ldei~~l~~~-----------~q~~---Ll~~l~~--~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPEHLTRE-----------QQYH---LVQLQSQ--EHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGGGSCHH-----------HHHH---HHHHHHS--SSCSSCEEEEESS
T ss_pred CCcEEEEcChHHCCHH-----------HHHH---HHHHHhh--cCCCEEEEEECCc
Confidence 4579999999988422 1222 3333332 2335667888885
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.06 E-value=0.11 Score=45.64 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=40.7
Q ss_pred HHHHHhcCCeEEEecccccccCcC---CCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKR---YDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
+..++..+|++|+||+++.+.+.. +..++.......+.+.+++..+.+.....++++|+|.....
T Consensus 1498 ~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~ 1565 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 1565 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEE
T ss_pred HHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccccc
Confidence 456788999999999999998753 11122122112345566666666655666777777755433
No 105
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.76 E-value=0.43 Score=43.12 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcC-----------CCCCCCeEEEeeCC----CCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-----------FDSRGDVKVIMATN----RIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~v~vi~ttn----~~~ 66 (131)
|.-|.... +.+++||++.+-.. .-+.+...+..+...+.. +.-.++..+++|.| ...
T Consensus 691 ~~g~~~~G-aw~~~DE~nr~~~e-------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~ 762 (2695)
T 4akg_A 691 LVGITQIG-AWGCFDEFNRLDEK-------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRS 762 (2695)
T ss_dssp HHHHHHHT-CEEEEETTTSSCHH-------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSC
T ss_pred HHHHHhcC-CEeeehhhhhcChH-------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcc
Confidence 33344444 89999999886321 112222333333333311 12234577888888 567
Q ss_pred cccccccCCCccceEEEeCCCCHHHHHHHHHH
Q psy522 67 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 98 (131)
Q Consensus 67 ~id~~l~~~grf~~~i~~~~P~~~~R~~il~~ 98 (131)
.+|+++++ || +.+.+..|+.+...+++..
T Consensus 763 eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 763 ELPENLKK--SF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp CCCHHHHT--TE-EEEECCCCCHHHHHHHHHH
T ss_pred cccHHHHh--he-EEEEeeCCCHHHHHHHHHH
Confidence 89999999 99 5899999999998888643
No 106
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.01 E-value=0.97 Score=32.87 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=40.4
Q ss_pred CeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh--cCCCCC----CCeEEEeeCCCCCcccccccCCCcc-----
Q psy522 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL--DGFDSR----GDVKVIMATNRIETLDPALIRPGRI----- 78 (131)
Q Consensus 10 p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~----~~v~vi~ttn~~~~id~~l~~~grf----- 78 (131)
..+|||||++.+-.. ....+..+++.- ..+... -.+.+|+|||.. +. .+...|+|
T Consensus 232 ~gtlfldei~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~-~~~~~g~fr~dl~ 297 (387)
T 1ny5_A 232 GGTLFLDEIGELSLE-----------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN--IK-ELVKEGKFREDLY 297 (387)
T ss_dssp TSEEEEESGGGCCHH-----------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC--HH-HHHHTTSSCHHHH
T ss_pred CcEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC--HH-HHHHcCCccHHHH
Confidence 368999999998322 234444454431 111111 257788888852 11 22223444
Q ss_pred ----ceEEEeCCCC--HHHHHHHHHHHhc
Q psy522 79 ----DRKIEFPLPD--EKTKRRIFNIHTS 101 (131)
Q Consensus 79 ----~~~i~~~~P~--~~~R~~il~~~l~ 101 (131)
...|++|+.. .+....+.++++.
T Consensus 298 ~rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 298 YRLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp HHHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred HhhcCCeecCCcchhccccHHHHHHHHHH
Confidence 2345555542 3555566666654
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.82 E-value=0.19 Score=32.13 Aligned_cols=14 Identities=7% Similarity=0.380 Sum_probs=11.5
Q ss_pred cCCeEEEecccccc
Q psy522 8 HAPSIVFIDEIDAV 21 (131)
Q Consensus 8 ~~p~ii~iDe~d~l 21 (131)
..|.+|+|||++..
T Consensus 99 ~~~~llilDE~~~~ 112 (180)
T 3ec2_A 99 LNSPVLVLDDLGSE 112 (180)
T ss_dssp HTCSEEEEETCSSS
T ss_pred cCCCEEEEeCCCCC
Confidence 46899999999754
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.53 E-value=3.3 Score=26.59 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=12.3
Q ss_pred HhcCCeEEEeccccc
Q psy522 6 EEHAPSIVFIDEIDA 20 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~ 20 (131)
-...|.++++||++-
T Consensus 96 l~~~p~llilDEigp 110 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGK 110 (178)
T ss_dssp HHCTTCEEEECCCST
T ss_pred cccCCCEEEEeCCCC
Confidence 567899999999753
No 109
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.10 E-value=1.2 Score=32.19 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=42.0
Q ss_pred eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHh--cCCCCC----CCeEEEeeCCCCCcccccccCCCccc-----
Q psy522 11 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL--DGFDSR----GDVKVIMATNRIETLDPALIRPGRID----- 79 (131)
Q Consensus 11 ~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~----~~v~vi~ttn~~~~id~~l~~~grf~----- 79 (131)
..|||||++.+-.. ....+..+++.= ..+... -.+-+|++||. .+. .....|+|.
T Consensus 224 gtlfldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~-~~v~~g~fr~dL~~ 289 (368)
T 3dzd_A 224 GTLFLDEVGELDQR-----------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLE-EEIKKGNFREDLYY 289 (368)
T ss_dssp SEEEEETGGGSCHH-----------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHH-HHHHTTSSCHHHHH
T ss_pred CeEEecChhhCCHH-----------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHH-HHHHcCCccHHHHH
Confidence 67999999998322 233444444321 111111 14668888873 222 222334553
Q ss_pred ----eEEEeCCCCH--HHHHHHHHHHhc
Q psy522 80 ----RKIEFPLPDE--KTKRRIFNIHTS 101 (131)
Q Consensus 80 ----~~i~~~~P~~--~~R~~il~~~l~ 101 (131)
..|++|+... +....++++++.
T Consensus 290 rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 290 RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 2577777644 666777777764
No 110
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.92 E-value=3.5 Score=31.26 Aligned_cols=86 Identities=12% Similarity=0.190 Sum_probs=49.4
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEe-CC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF-PL 86 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~-~~ 86 (131)
.+|.+|+|||++.. .. +. .+ .++..||.||+....... . . |.. ..+.. +.
T Consensus 235 ~~~~LLVLDdv~~~----------------~~----l~---~l--~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~ 285 (591)
T 1z6t_A 235 HPRSLLILDDVWDS----------------WV----LK---AF--DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESS 285 (591)
T ss_dssp CTTCEEEEEEECCH----------------HH----HH---TT--CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSS
T ss_pred CCCeEEEEeCCCCH----------------HH----HH---Hh--cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCC
Confidence 36899999999641 01 11 11 234567777776442221 1 1 121 22322 46
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCC
Q psy522 87 PDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 122 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 122 (131)
.+.++-.+++.................+++.+.|..
T Consensus 286 L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 286 LGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp CCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 789999999988875422112334778889898873
No 111
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.21 E-value=0.43 Score=36.31 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=52.3
Q ss_pred CCe-EEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC--cccccccCCCccceEEEeC
Q psy522 9 APS-IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE--TLDPALIRPGRIDRKIEFP 85 (131)
Q Consensus 9 ~p~-ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~--~id~~l~~~grf~~~i~~~ 85 (131)
-|- +|++||+..++... .. .+..++..+......-++.+|.+|++|. .++..++. -|..+|.+.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~----~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GK----KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HH----HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hH----HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 464 89999997776421 11 1222333222222334688889999887 68888888 898999999
Q ss_pred CCCHHHHHHHHHH
Q psy522 86 LPDEKTKRRIFNI 98 (131)
Q Consensus 86 ~P~~~~R~~il~~ 98 (131)
..+..+...++..
T Consensus 363 v~s~~dsr~ilg~ 375 (512)
T 2ius_A 363 VSSKIDSRTILDQ 375 (512)
T ss_dssp CSSHHHHHHHHSS
T ss_pred cCCHHHHHHhcCC
Confidence 9999998888753
No 112
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.83 E-value=3.3 Score=30.23 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=50.4
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc--------ccccCCCccc
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD--------PALIRPGRID 79 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id--------~~l~~~grf~ 79 (131)
..|.++++||+-.+..-. .+..++... .+.++.++..|.++..+. .+++. -+.
T Consensus 278 ~~~~~~~lDE~~~l~~~~-------------~l~~~~~~~----R~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~--n~~ 338 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA-------------SLADALTKG----RKAGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFR 338 (437)
T ss_dssp TCCEEEEESCGGGSCBCS-------------SHHHHHHHC----TTTTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCC
T ss_pred CccEEEEEEcccccccch-------------hHHHHHHHH----hccCCEEEEEecCHHHHHHHHCHHHHHHHHh--ccC
Confidence 458999999999886422 233344433 345788999999988886 45776 788
Q ss_pred eEEEeCCC--CHHHHHHHHH
Q psy522 80 RKIEFPLP--DEKTKRRIFN 97 (131)
Q Consensus 80 ~~i~~~~P--~~~~R~~il~ 97 (131)
..+.++.. +.+....+-+
T Consensus 339 ~~i~~~~~~~d~~ta~~~s~ 358 (437)
T 1e9r_A 339 SLVVLGGSRTDPKTNEDMSL 358 (437)
T ss_dssp EEEEEECCTTCHHHHHHHHH
T ss_pred cEEEEeCCCCCHHHHHHHHH
Confidence 89999988 7777665543
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=79.82 E-value=15 Score=30.06 Aligned_cols=85 Identities=11% Similarity=0.166 Sum_probs=52.8
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCC-
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL- 86 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~- 86 (131)
.++.+|+||+++... .+..+ .++..||.||+.+.-... .. .-...+.++.
T Consensus 235 ~~~~LlvlDd~~~~~-----------------------~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~ 285 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPW-----------------------VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESG 285 (1249)
T ss_dssp SCSCEEEEESCCCHH-----------------------HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSS
T ss_pred CCCEEEEEecCCCHH-----------------------HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCC
Confidence 448999999997431 11222 234567788876543311 11 2335678876
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCC
Q psy522 87 PDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 121 (131)
.+.++-.++|................++++.+.|+
T Consensus 286 l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 286 LGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp CCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 78999999998876443322233477788988887
No 114
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.14 E-value=2 Score=38.00 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=36.9
Q ss_pred cCCeEEEecccccccC-cC--CCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 8 HAPSIVFIDEIDAVGT-KR--YDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
..|++|+||.+..+.. .. +.+++....-..+.+..++..+..+....++.||++.......+
T Consensus 809 ~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e 873 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 873 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTT
T ss_pred cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccch
Confidence 7899999999999986 22 11122221111234566666666655666777777766544443
No 115
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=78.01 E-value=3.5 Score=28.43 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.||++||--+-+ +......+..++..+ ....+..+|.+|.+++.+
T Consensus 167 lAraL~~~p~lllLDEPts~L----------D~~~~~~i~~~l~~~---~~~~g~tviivtHd~~~~ 220 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSAL----------DAGNQLRVQRLLYES---PEWASRTVLLITQQLSLA 220 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTC----------CHHHHHHHHHHHHHC---TTTTTSEEEEECSCHHHH
T ss_pred HHHHHhcCCCEEEEECCccCC----------CHHHHHHHHHHHHHH---HhhcCCEEEEEeCCHHHH
Confidence 356667889999999953322 223334444455443 222234556666655433
No 116
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=77.94 E-value=12 Score=25.47 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=29.9
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.|+++||--+- -+......+..++..+. . + ..+|.+|.+++.+
T Consensus 166 lAraL~~~p~lllLDEPts~----------LD~~~~~~i~~~l~~l~---~-~-~tviivtH~~~~~ 217 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEATSS----------LDSKTEYLFQKAVEDLR---K-N-RTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHCCSEEEEECCCCT----------TCHHHHHHHHHHHHHHT---T-T-SEEEEECSSGGGS
T ss_pred HHHHHHcCCCEEEEECcccc----------CCHHHHHHHHHHHHHhc---C-C-CEEEEEcCCHHHH
Confidence 34566788999999995332 22233445555555553 2 2 3566667665543
No 117
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=77.28 E-value=8.1 Score=26.49 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--+- -+......+..++..+. . .+|.+|.+++.+
T Consensus 139 lAraL~~~p~lllLDEPts~----------LD~~~~~~l~~~L~~~~---~----tviivtHd~~~~ 188 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFEN----------VDAARRHVISRYIKEYG---K----EGILVTHELDML 188 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTT----------CCHHHHHHHHHHHHHSC---S----EEEEEESCGGGG
T ss_pred HHHHHHhCCCEEEEECCccc----------cCHHHHHHHHHHHHHhc---C----cEEEEEcCHHHH
Confidence 35677788999999995322 23333445555555443 2 466666665443
No 118
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=76.63 E-value=8.2 Score=26.23 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||-=+ .-+......+..++..+. .. +..||.+|.+.+.+
T Consensus 164 iAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIA----------GVAPGLAHDIFNHVLELK---AK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTT
T ss_pred HHHHHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 3466778899999999522 222333445555555442 22 34566677765554
No 119
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=76.15 E-value=15 Score=24.74 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--+- -.......+..++..+. .+ ..+|.+|.+++.+
T Consensus 156 iAraL~~~p~lllLDEPts~----------LD~~~~~~i~~~l~~~~----~g-~tviivtH~~~~~ 207 (247)
T 2ff7_A 156 IARALVNNPKILIFDEATSA----------LDYESEHVIMRNMHKIC----KG-RTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHTTCCSEEEECCCCSC----------CCHHHHHHHHHHHHHHH----TT-SEEEEECSSGGGG
T ss_pred HHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHc----CC-CEEEEEeCCHHHH
Confidence 34666788999999995332 22333445555555542 22 3455566655443
No 120
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=75.17 E-value=8.8 Score=26.24 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--+- -+......+..++..+. .. +..+|.+|.+++.+
T Consensus 149 lAraL~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVG----------LDREGKTDLLRIVEKWK---TL-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTT
T ss_pred HHHHHHcCCCEEEEcCcccc----------CCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 35667788999999995332 22233444445554442 22 34566677766554
No 121
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=75.12 E-value=11 Score=25.21 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=13.6
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||-
T Consensus 138 lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDP 154 (237)
T ss_dssp HHHHHHHCCSEEEEEST
T ss_pred HHHHHhcCCCEEEEeCc
Confidence 34666788999999995
No 122
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.57 E-value=8.2 Score=26.10 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--+-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 154 iAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGL----------DIDALKVVARGVNAMR---GP-NFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTT----------CHHHHHHHHHHHHHHC---ST-TCEEEEECSSSGGG
T ss_pred HHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEecCHHHH
Confidence 345667889999999963322 2223345555555553 22 34566667665544
No 123
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=73.87 E-value=4.6 Score=23.50 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
-+++++......+....++.. |-.+ .+.-|.-+.++-...++..+.+.
T Consensus 80 ~~ii~~t~~~~~~~~~~~~~~-g~~~-~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 80 TPVLVISATENMADIAKALRL-GVED-VLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CCEEEEECCCCHHHHHHHHHH-CCSE-EEESCC---CHHHHHHHHHHC--
T ss_pred CCEEEEEcCCCHHHHHHHHHc-CCCE-EEeCCCCcHHHHHHHHHHHhchh
Confidence 355555554444444444443 3333 33322226677777777777653
No 124
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=72.49 E-value=9.2 Score=25.37 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=28.3
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
+.+|-...|.++++||--+- -+......+..++..+. .. +..+|.+|.+.+
T Consensus 151 laral~~~p~lllLDEPt~~----------LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGN----------LDSANTKRVMDIFLKIN---EG-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHH
Confidence 34566788999999995322 22233444445554442 23 345666666543
No 125
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=71.54 E-value=7.8 Score=26.55 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.||++||--+- -+......+..++. .+... +..+|.+|.+++.+
T Consensus 175 iAraL~~~p~lLlLDEPts~----------LD~~~~~~l~~~l~---~l~~~-g~tviivtHd~~~~ 227 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSG----------LDIDALKVVADGVN---SLRDG-KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTT----------CCHHHHHHHHHHHH---TTCCS-SCEEEEECSSGGGG
T ss_pred HHHHHHhCCCEEEEeCCCCC----------CCHHHHHHHHHHHH---HHHhc-CCEEEEEeeCHHHH
Confidence 34566788999999995332 22233344444444 33333 44566677765544
No 126
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=71.50 E-value=6.2 Score=27.08 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.|.+|++||-= ..-+......+..++..+. ..++..+|.+|.+.+.+
T Consensus 165 ~p~lLllDEPt----------s~LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 165 TPRWLFLDEPT----------SALDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp CCEEEEECCCC----------SSCCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHHHH
T ss_pred CCCEEEEeCcc----------ccCCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHHHH
Confidence 89999999942 2223333344444444442 33455677777765543
No 127
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=70.24 E-value=7.4 Score=26.46 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=29.8
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--+- -+......+..++..+. ...+..+|.+|.+.+.+
T Consensus 139 lAraL~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSA----------LDLANQDIVLSLLIDLA---QSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTT----------SCHHHHHHHHHHHHHHH---HTSCCEEEEEESCHHHH
T ss_pred HHHHHHcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 35677788999999995332 22233344444554442 22233456666655443
No 128
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=68.30 E-value=8.3 Score=26.45 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--+ .-+......+..++..+. .. +..+|.+|.+.+.+
T Consensus 170 lAraL~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTS----------ALDPEMVGEVLSVMKQLA---NE-GMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHHCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHHH
Confidence 3566778899999999522 223333445555555442 23 34566677765443
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=67.73 E-value=5.2 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.5
Q ss_pred HHhcCCeEEEecccccccCc
Q psy522 5 AEEHAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~ 24 (131)
++.+.|.+|+||++-.+...
T Consensus 115 ~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 115 MVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHSCEEEEEEETSSGGGC-
T ss_pred HhcCCceEEEEeCchHHHHH
Confidence 44578999999999887643
No 130
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=67.65 E-value=8.3 Score=26.66 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||-=+ .-+......+..++..+.. .. +..+|.+|.+.+.+
T Consensus 154 iAraL~~~P~lLlLDEPts----------~LD~~~~~~i~~~l~~l~~--~~-g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTA----------GLDPMGVSEIMKLLVEMQK--EL-GITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHTTCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHHH--HH-CCEEEEEESCCSSG
T ss_pred HHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHHHh--hC-CCEEEEEecCHHHH
Confidence 3566778899999999422 2222233444444444420 12 34566667665554
No 131
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=67.16 E-value=7.3 Score=26.62 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.+|++||--+ .-+......+..++..+. .. +..+|.+|.+.+.+
T Consensus 164 lAraL~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~~ 216 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTS----------ALDPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGFA 216 (262)
T ss_dssp HHHHHHTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHH---HT-TCCEEEECSCHHHH
T ss_pred HHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 3567778899999999522 223333445555555442 22 33456666665443
No 132
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=67.13 E-value=4.1 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=16.8
Q ss_pred HHHHhcCCeEEEecccccccC
Q psy522 3 RVAEEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~ 23 (131)
++|+.++|.|+++|+-..+..
T Consensus 71 ~e~~~~~P~vv~vd~~N~i~~ 91 (102)
T 3plx_B 71 EEAKTFKPKVVFVDENNTATK 91 (102)
T ss_dssp HHHHHCCCEEEEECTTSCEEE
T ss_pred HHHhcCCCEEEEECCCCcEEE
Confidence 578899999999999555543
No 133
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=66.56 E-value=6.1 Score=26.50 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 66 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~ 66 (131)
+.+|-...|.++++||-=+ .-+......+..++..+. ...+..+|.+|.+++
T Consensus 156 iAral~~~p~llllDEPts----------~LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 156 IARALANNPPIILADQPTW----------ALDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 3566778899999999522 222223344444444442 222345677777654
No 134
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=65.88 E-value=40 Score=25.38 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEEEeCCCC
Q psy522 9 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 88 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~ 88 (131)
++.+|+||+++..- .+ .|... ++..||.||+...-.. .. +..+..+.++..+
T Consensus 243 kr~LlVLDdv~~~~----------------~~-~~~~~-------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~ 294 (549)
T 2a5y_B 243 PNTLFVFDDVVQEE----------------TI-RWAQE-------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLE 294 (549)
T ss_dssp TTEEEEEEEECCHH----------------HH-HHHHH-------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCC
T ss_pred CcEEEEEECCCCch----------------hh-ccccc-------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCC
Confidence 37999999987631 11 12111 3456777777533221 11 1234568999999
Q ss_pred HHHHHHHHHHHhcCCCCCCc--ccHHHHHHHcCCC
Q psy522 89 EKTKRRIFNIHTSRMTLAED--VNLQELIMAKDDL 121 (131)
Q Consensus 89 ~~~R~~il~~~l~~~~~~~~--~~~~~la~~t~g~ 121 (131)
.++-.++|...........+ .....+++.+.|.
T Consensus 295 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 295 IDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp HHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 99999999887433221111 1255677778776
No 135
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=65.62 E-value=2.5 Score=28.12 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=13.9
Q ss_pred HHHHhcCCeEEEeccccc
Q psy522 3 RVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~ 20 (131)
.+|-...|.++++||--+
T Consensus 145 araL~~~p~lllLDEPts 162 (214)
T 1sgw_A 145 ASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp HHHTTSCCSEEEEESTTT
T ss_pred HHHHHhCCCEEEEECCCc
Confidence 456667899999999643
No 136
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.75 E-value=18 Score=24.57 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=29.6
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||--+- -+......+..++..+. .. +..+|.+|.+++.+
T Consensus 157 lAraL~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~---~~-g~tiiivtHd~~~~ 209 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSG----------LDVLNAREVRKILKQAS---QE-GLTILVSSHNMLEV 209 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHH---HT-TCEEEEEECCHHHH
T ss_pred HHHHHHcCCCEEEEeCCccc----------cCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHHH
Confidence 35667788999999995322 23333445555555443 22 33455566654443
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=64.26 E-value=2.8 Score=27.28 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.6
Q ss_pred HHhcCCe--EEEeccccccc
Q psy522 5 AEEHAPS--IVFIDEIDAVG 22 (131)
Q Consensus 5 A~~~~p~--ii~iDe~d~l~ 22 (131)
+..+.|. +|++||.-.+.
T Consensus 117 ~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 117 KQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHCSSCEEEEEETGGGGS
T ss_pred HHhhCCCceEEEEECchHhh
Confidence 4456788 99999998875
No 138
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=63.27 E-value=8.3 Score=27.88 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.1
Q ss_pred HhcCCeEEEecccccccC
Q psy522 6 EEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~ 23 (131)
+...+.+|+||.+..+..
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 346789999999999985
No 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.96 E-value=32 Score=32.36 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCeEEEeeCC----CCCcccccccCCCccceEEEeCCCCHHHHHHHHHH
Q psy522 54 GDVKVIMATN----RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 98 (131)
Q Consensus 54 ~~v~vi~ttn----~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~ 98 (131)
+...++.|.| ....+|++++. || +.|.+..||.+.-.+++-.
T Consensus 706 ~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 706 QDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp TTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHH
T ss_pred CCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHH
Confidence 5688889988 35789999999 99 4699999999998887643
No 140
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=60.39 E-value=21 Score=23.91 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 67 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~ 67 (131)
+.+|-...|.++++||--+- -+......+..++..+. ..+ ..+|.+|.+++.
T Consensus 150 lAraL~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~~~---~~g-~tvi~vtHd~~~ 201 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPSLG----------LAPILVSEVFEVIQKIN---QEG-TTILLVEQNALG 201 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTT----------CCHHHHHHHHHHHHHHH---HTT-CCEEEEESCHHH
T ss_pred HHHHHHcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---HCC-CEEEEEecCHHH
Confidence 35667788999999995322 23333445555555443 222 335555665433
No 141
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=59.00 E-value=8.6 Score=27.91 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 67 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~ 67 (131)
.+|-.+.|.+|++||-=+ .-+......+..++..+. ...++.+|.+|.+.+.
T Consensus 175 ArAL~~~P~lLLlDEPTs----------~LD~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 175 ARALASNPKVLLCDQATS----------ALDPATTRSILELLKDIN---RRLGLTILLITHEMDV 226 (366)
T ss_dssp HHHTTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHH---HHSCCEEEEEESCHHH
T ss_pred HHHHhcCCCEEEEECCCc----------cCCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH
Confidence 456678899999999522 223333444444554442 2324456666666544
No 142
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.13 E-value=2.3 Score=30.58 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.3
Q ss_pred HhcCCeEEEecccccccC
Q psy522 6 EEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~ 23 (131)
+...|.+|+||++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 456799999999999885
No 143
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=58.00 E-value=11 Score=27.24 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHhcCC--eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc
Q psy522 5 AEEHAP--SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 67 (131)
Q Consensus 5 A~~~~p--~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~ 67 (131)
+-...| .||+|||.+.=+.. .....+..++..+. + +.-||.+|.+++-
T Consensus 309 ~l~~~~~~~~LlLDEpt~~LD~----------~~~~~l~~~L~~l~----~-~~~vi~itH~~~~ 358 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDAGIGG----------AAAIAVAEQLSRLA----D-TRQVLVVTHLAQI 358 (415)
T ss_dssp HHHHCCSSSEEEESSTTTTCCH----------HHHHHHHHHHHHHT----T-TSEEEEECSCHHH
T ss_pred HHHhCCCCCEEEEECCCCCCCH----------HHHHHHHHHHHHHh----C-CCEEEEEeCcHHH
Confidence 344567 89999998764432 23445555555543 2 2345556665543
No 144
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=57.34 E-value=7.4 Score=24.84 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=11.6
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 147 ~~~lViDEah~~~~ 160 (206)
T 1vec_A 147 VQMIVLDEADKLLS 160 (206)
T ss_dssp CCEEEEETHHHHTS
T ss_pred CCEEEEEChHHhHh
Confidence 46899999999864
No 145
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.23 E-value=4.2 Score=26.28 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.3
Q ss_pred CCeEEEecccccccCc
Q psy522 9 APSIVFIDEIDAVGTK 24 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~~ 24 (131)
.|.+|+||++-.+...
T Consensus 105 ~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 105 NFALVVVDSITAHYRA 120 (220)
T ss_dssp TEEEEEEECCCCCTTG
T ss_pred CCCEEEEcCcHHHhhh
Confidence 4899999999887643
No 146
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=54.32 E-value=9.6 Score=25.08 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=13.0
Q ss_pred HHHHhcCCeEEEecccc
Q psy522 3 RVAEEHAPSIVFIDEID 19 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d 19 (131)
.+|-...|.+|++||--
T Consensus 116 AraL~~~p~lllLDEPt 132 (208)
T 3b85_A 116 MRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp GTTCCBCSEEEEECSGG
T ss_pred HHHHhcCCCEEEEeCCc
Confidence 34556789999999963
No 147
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=54.10 E-value=26 Score=22.51 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.6
Q ss_pred HhcCCeEEEecccccc
Q psy522 6 EEHAPSIVFIDEIDAV 21 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l 21 (131)
....|.|+++||++.+
T Consensus 102 ~~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 102 SGPGQRVCVIDEIGKM 117 (189)
T ss_dssp CSSCCCCEEECCCSTT
T ss_pred hccCCCEEEEeCCCcc
Confidence 3567999999998555
No 148
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=53.59 E-value=32 Score=24.10 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=13.5
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.||++||.
T Consensus 201 iARAL~~~p~iLlLDEP 217 (306)
T 3nh6_A 201 IARTILKAPGIILLDEA 217 (306)
T ss_dssp HHHHHHHCCSEEEEECC
T ss_pred HHHHHHhCCCEEEEECC
Confidence 34566678999999996
No 149
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=53.55 E-value=13 Score=23.92 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 159 ~~~lViDEah~~~~ 172 (220)
T 1t6n_A 159 IKHFILDECDKMLE 172 (220)
T ss_dssp CCEEEEESHHHHHS
T ss_pred CCEEEEcCHHHHhc
Confidence 46799999999864
No 150
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=53.30 E-value=19 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.2
Q ss_pred HHhcCCeEEEeccc
Q psy522 5 AEEHAPSIVFIDEI 18 (131)
Q Consensus 5 A~~~~p~ii~iDe~ 18 (131)
|-...|.++++||-
T Consensus 77 al~~~p~lllLDEP 90 (148)
T 1f2t_B 77 YLAGEISLLILDEP 90 (148)
T ss_dssp HHHSSCSEEEEESC
T ss_pred HHcCCCCEEEEECC
Confidence 44577999999995
No 151
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=53.02 E-value=16 Score=23.92 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+....|.+|++||.-....... + .......+..++..+. .. ++.+|.+|+..+..
T Consensus 131 l~~~~p~~lilDep~~~ld~~~---d--~~~~~~~l~~l~~~l~---~~-g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 131 VKAINAKRLVIDSIPSIALRLE---E--ERKIREVLLKLNTILL---EM-GVTTILTTEAPDPQ 185 (251)
T ss_dssp HHHTTCSEEEEECHHHHHHHSS---S--GGGHHHHHHHHHHHHH---HH-CCEEEEEECCC---
T ss_pred HHhhCCCEEEEccHHHHHhhcC---C--HHHHHHHHHHHHHHHH---HC-CCeEEEEECCCCCC
Confidence 3457899999999877664221 1 1123334555555543 22 34566666665554
No 152
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=51.92 E-value=5.6 Score=26.86 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.6
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||-
T Consensus 137 lAral~~~p~lllLDEP 153 (240)
T 2onk_A 137 LARALVIQPRLLLLDEP 153 (240)
T ss_dssp HHHHHTTCCSSBEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 34666788999999995
No 153
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=51.88 E-value=13 Score=26.76 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.7
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||=
T Consensus 156 lArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 156 LARALAPRPQVLLFDEP 172 (355)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 34667788999999994
No 154
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=51.58 E-value=8.3 Score=23.97 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=16.0
Q ss_pred HHHHhcCCeEEEecccccccC
Q psy522 3 RVAEEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~ 23 (131)
++|+.++|.|+|+|+-..+..
T Consensus 96 ~E~~~~~P~vV~vd~~N~i~~ 116 (139)
T 2c45_A 96 ARARTYQPRIVFVDAYNKPID 116 (139)
T ss_dssp HHHHSCCCEEEECCTTCC---
T ss_pred HHhccCCCeEEEECCCCCEEE
Confidence 578899999999999777654
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=51.37 E-value=4.1 Score=28.00 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=13.1
Q ss_pred HHhcCCeEEEeccccccc
Q psy522 5 AEEHAPSIVFIDEIDAVG 22 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~ 22 (131)
+..+.|.+|+|||.-.+.
T Consensus 143 ~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 143 RSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHTTCCSEEEEEEEC---
T ss_pred HHhcCCCEEEEcCccccC
Confidence 466789999999998875
No 156
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=51.24 E-value=14 Score=26.51 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.0
Q ss_pred HHHHhcCCeEEEeccc
Q psy522 3 RVAEEHAPSIVFIDEI 18 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~ 18 (131)
.+|-...|.++++||-
T Consensus 139 AraL~~~P~lLLLDEP 154 (348)
T 3d31_A 139 ARALVTNPKILLLDEP 154 (348)
T ss_dssp HHHTTSCCSEEEEESS
T ss_pred HHHHHcCCCEEEEECc
Confidence 4566788999999994
No 157
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=50.62 E-value=4 Score=28.72 Aligned_cols=20 Identities=5% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHh-cCCeEEEecccccccCc
Q psy522 5 AEE-HAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 5 A~~-~~p~ii~iDe~d~l~~~ 24 (131)
.+. ..|.+|+||.+..++..
T Consensus 198 ~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 198 VSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHCTTEEEEEETTTTHHHHH
T ss_pred HHhccCCCEEEEeCcHHHhhh
Confidence 344 77999999999998743
No 158
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=50.39 E-value=3.6 Score=27.31 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=11.3
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-..|++||+|.+..
T Consensus 176 ~~~lViDEah~~~~ 189 (245)
T 3dkp_A 176 VEWLVVDESDKLFE 189 (245)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEeChHHhcc
Confidence 45799999999864
No 159
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=50.36 E-value=3.6 Score=27.49 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.8
Q ss_pred eEEEecccccccC
Q psy522 11 SIVFIDEIDAVGT 23 (131)
Q Consensus 11 ~ii~iDe~d~l~~ 23 (131)
.+|++||+|.+..
T Consensus 176 ~~lViDEah~~~~ 188 (253)
T 1wrb_A 176 KYIVLDEADRMLD 188 (253)
T ss_dssp CEEEEETHHHHHH
T ss_pred CEEEEeCHHHHHh
Confidence 5799999999863
No 160
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=50.34 E-value=63 Score=24.64 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=13.8
Q ss_pred HHHHhcCCeEEEeccccc
Q psy522 3 RVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~ 20 (131)
.+|-...|.|+++||.-+
T Consensus 492 Aral~~~p~illlDEpts 509 (582)
T 3b60_A 492 ARALLRDSPILILDEATS 509 (582)
T ss_dssp HHHHHHCCSEEEEETTTS
T ss_pred HHHHHhCCCEEEEECccc
Confidence 456667899999999633
No 161
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=49.91 E-value=11 Score=24.57 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 46799999998764
No 162
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=49.51 E-value=38 Score=19.98 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=45.7
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 82 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i 82 (131)
+..+...|.+|++|-- .+.. .. ...+..+... ...-+++++......+....++. .|..+ .+
T Consensus 45 ~~l~~~~~dlii~D~~---l~~~------~g---~~~~~~l~~~----~~~~~ii~ls~~~~~~~~~~~~~-~g~~~-~l 106 (153)
T 3cz5_A 45 RLYRETTPDIVVMDLT---LPGP------GG---IEATRHIRQW----DGAARILIFTMHQGSAFALKAFE-AGASG-YV 106 (153)
T ss_dssp HHHHTTCCSEEEECSC---CSSS------CH---HHHHHHHHHH----CTTCCEEEEESCCSHHHHHHHHH-TTCSE-EE
T ss_pred HHHhcCCCCEEEEecC---CCCC------CH---HHHHHHHHHh----CCCCeEEEEECCCCHHHHHHHHH-CCCcE-EE
Confidence 4456677899998742 1111 11 1223323221 12335555554444444444444 34443 33
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHc
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t 118 (131)
. .+-+.++-...++..+.+.......-...+....
T Consensus 107 ~-kp~~~~~L~~~i~~~~~~~~~~~~~~~~~l~~~~ 141 (153)
T 3cz5_A 107 T-KSSDPAELVQAIEAILAGRRAMSPDIAQEIAEER 141 (153)
T ss_dssp E-TTSCTTHHHHHHHHHTTTCCEECHHHHHHHHHHH
T ss_pred e-cCCCHHHHHHHHHHHHhCCccCChHHHHHHHhhc
Confidence 2 2336666677777777655433322233444443
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=48.59 E-value=22 Score=25.62 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=15.2
Q ss_pred HhcCCeEEEecccccccC
Q psy522 6 EEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~ 23 (131)
+...|.++++|.+-.+++
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 347799999999998886
No 164
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=48.26 E-value=14 Score=26.68 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=13.9
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||=
T Consensus 150 lArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp HHHHHHTCCSEEEEECT
T ss_pred HHHHHhcCCCEEEECCC
Confidence 35677789999999994
No 165
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=48.07 E-value=22 Score=25.63 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=13.8
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.+|++||=
T Consensus 149 lArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 149 LARALAPDPELILLDEP 165 (359)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 35677788999999994
No 166
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=47.88 E-value=7.7 Score=25.18 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.5
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 156 ~~~iViDEah~~~~ 169 (224)
T 1qde_A 156 IKMFILDEADEMLS 169 (224)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CcEEEEcChhHHhh
Confidence 46899999998764
No 167
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.78 E-value=15 Score=25.30 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.8
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.+|++||-
T Consensus 172 lAraL~~~p~lLlLDEP 188 (279)
T 2ihy_A 172 IARALMGQPQVLILDEP 188 (279)
T ss_dssp HHHHHHTCCSEEEEEST
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 35667788999999995
No 168
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=47.44 E-value=10 Score=24.59 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 151 ~~~lViDEah~~~~ 164 (219)
T 1q0u_A 151 AHILVVDEADLMLD 164 (219)
T ss_dssp CCEEEECSHHHHHH
T ss_pred ceEEEEcCchHHhh
Confidence 46799999999863
No 169
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=47.19 E-value=72 Score=24.46 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|--..|.|+++||.=+-. +......+...+..+. . +..+|..|++++.+
T Consensus 503 Aral~~~p~illlDEpts~L----------D~~~~~~i~~~l~~~~----~-~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 503 TRAFLANPKILILDEATSNV----------DTKTEKSIQAAMWKLM----E-GKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHTCCSEEEECCCCTTC----------CHHHHHHHHHHHHHHH----T-TSEEEEESCCTTHH
T ss_pred HHHHhcCCCEEEEECCccCC----------CHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 45666889999999963221 2222333444444332 1 23566677776655
No 170
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=47.09 E-value=15 Score=26.51 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.7
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||=
T Consensus 144 lArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEP 160 (359)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEECC
Confidence 35667788999999994
No 171
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=46.88 E-value=38 Score=23.79 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=10.7
Q ss_pred hcCCeEEEeccccc
Q psy522 7 EHAPSIVFIDEIDA 20 (131)
Q Consensus 7 ~~~p~ii~iDe~d~ 20 (131)
...|.++++||--.
T Consensus 270 ~~~p~~lllDEp~~ 283 (339)
T 3qkt_A 270 AGEISLLILDEPTP 283 (339)
T ss_dssp TTTTCEEEEECCCT
T ss_pred cCCCCEEEEECCCC
Confidence 35799999999533
No 172
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=46.69 E-value=8.1 Score=24.62 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.3
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 145 ~~~iViDEah~~~~ 158 (207)
T 2gxq_A 145 VEVAVLDEADEMLS 158 (207)
T ss_dssp CSEEEEESHHHHHH
T ss_pred ceEEEEEChhHhhc
Confidence 46899999998753
No 173
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=45.93 E-value=6.7 Score=29.00 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.0
Q ss_pred hcCCeEEEecccccccCc
Q psy522 7 EHAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~~ 24 (131)
.+.|.+|+||++-.+...
T Consensus 311 ~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTCCCEEEEECGGGSCCS
T ss_pred HcCCCEEEEccHHHhccC
Confidence 467999999999988643
No 174
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=45.85 E-value=16 Score=26.49 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=13.7
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||=
T Consensus 152 lArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEP 168 (372)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHhcCCCEEEEcCC
Confidence 35667788999999995
No 175
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=45.77 E-value=8.7 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 167 ~~~lViDEah~~~~ 180 (230)
T 2oxc_A 167 IRLFILDEADKLLE 180 (230)
T ss_dssp CCEEEESSHHHHHS
T ss_pred CCEEEeCCchHhhc
Confidence 35899999999864
No 176
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=45.61 E-value=17 Score=26.54 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.6
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.+|++||=
T Consensus 144 iArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp HHHHHHHCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEECC
Confidence 34667788999999994
No 177
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=45.32 E-value=93 Score=23.68 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=12.9
Q ss_pred HHHHhcCCeEEEeccc
Q psy522 3 RVAEEHAPSIVFIDEI 18 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~ 18 (131)
.+|-...|.|+++||.
T Consensus 489 Aral~~~p~illlDEp 504 (578)
T 4a82_A 489 ARIFLNNPPILILDEA 504 (578)
T ss_dssp HHHHHHCCSEEEEEST
T ss_pred HHHHHcCCCEEEEECc
Confidence 4566678999999996
No 178
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=44.93 E-value=24 Score=23.81 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHhcCCe-------EEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPS-------IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~-------ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|. ++++||--+- -+......+..++..+. .+ +..+|.+|.+.+.+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~----------LD~~~~~~l~~~l~~l~---~~-g~tviivtHd~~~~ 196 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNS----------LDVAQQSALDKILSALS---QQ-GLAIVMSSHDLNHT 196 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTT----------CCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHcCCCcCCCCCeEEEEECCccc----------CCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 345556677 9999995322 22333444555554442 22 33566677765543
No 179
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=44.88 E-value=13 Score=24.62 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.3
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-..|++||+|.+..
T Consensus 177 ~~~lViDEah~l~~ 190 (242)
T 3fe2_A 177 TTYLVLDEADRMLD 190 (242)
T ss_dssp CCEEEETTHHHHHH
T ss_pred ccEEEEeCHHHHhh
Confidence 45799999998864
No 180
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=43.53 E-value=42 Score=18.68 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=10.5
Q ss_pred HHHHhcCCeEEEecc
Q psy522 3 RVAEEHAPSIVFIDE 17 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe 17 (131)
+..+...|.++++|-
T Consensus 41 ~~~~~~~~dlil~D~ 55 (120)
T 1tmy_A 41 EKYKELKPDIVTMDI 55 (120)
T ss_dssp HHHHHHCCSEEEEEC
T ss_pred HHHHhcCCCEEEEeC
Confidence 345566788888874
No 181
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=43.43 E-value=59 Score=24.77 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.1
Q ss_pred HHHHhcCCeEEEeccc
Q psy522 3 RVAEEHAPSIVFIDEI 18 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~ 18 (131)
.+|-...|.|+++||.
T Consensus 492 Aral~~~p~illlDEp 507 (582)
T 3b5x_A 492 ARALLRDAPVLILDEA 507 (582)
T ss_pred HHHHHcCCCEEEEECc
Confidence 4566688999999996
No 182
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=43.09 E-value=14 Score=24.16 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.1
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 172 ~~~lViDEah~~~~ 185 (236)
T 2pl3_A 172 LQMLVLDEADRILD 185 (236)
T ss_dssp CCEEEETTHHHHHH
T ss_pred ccEEEEeChHHHhc
Confidence 35899999998763
No 183
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=42.98 E-value=14 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=15.4
Q ss_pred HHhcCCeEEEecccccccCcC
Q psy522 5 AEEHAPSIVFIDEIDAVGTKR 25 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~~~~ 25 (131)
+....|.+|+||++-.++...
T Consensus 269 l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 269 MSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HHHSCEEEEEEETGGGGCC--
T ss_pred HHhcCCceEEecchhhhCchh
Confidence 345689999999998877543
No 184
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=42.49 E-value=4.8 Score=26.18 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=13.7
Q ss_pred hcCCeEEEecccccccC
Q psy522 7 EHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 7 ~~~p~ii~iDe~d~l~~ 23 (131)
...|.+|++||.-..+.
T Consensus 123 ~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp SSCEEEEEEETSSHHHH
T ss_pred CCceeEEEECChHHHhc
Confidence 56899999999877653
No 185
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=42.42 E-value=49 Score=19.19 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=10.5
Q ss_pred HHHHhcCCeEEEecc
Q psy522 3 RVAEEHAPSIVFIDE 17 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe 17 (131)
+.++...|.+|++|-
T Consensus 45 ~~l~~~~~dlii~D~ 59 (144)
T 3kht_A 45 YQVQQAKYDLIILDI 59 (144)
T ss_dssp HHHTTCCCSEEEECT
T ss_pred HHhhcCCCCEEEEeC
Confidence 345567788888874
No 186
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=41.93 E-value=13 Score=26.58 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=13.7
Q ss_pred cCCeEEEecccccccC
Q psy522 8 HAPSIVFIDEIDAVGT 23 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~ 23 (131)
..|.+|++|++-+++.
T Consensus 230 ~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFR 245 (349)
T ss_dssp SCEEEEEEETSSTTHH
T ss_pred CCCCEEEEeCchHhhh
Confidence 6799999999988763
No 187
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=41.80 E-value=13 Score=24.78 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=11.1
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 187 ~~~lViDEah~l~~ 200 (249)
T 3ber_A 187 LKYLVMDEADRILN 200 (249)
T ss_dssp CCEEEECSHHHHHH
T ss_pred cCEEEEcChhhhhc
Confidence 45799999998754
No 188
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=41.75 E-value=32 Score=18.44 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHH
Q psy522 87 PDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 128 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~ 128 (131)
-++++...+=..+... ......+..+||..+ |+|..+|..
T Consensus 11 ~~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~t-gLt~~qVkv 50 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS-QFPDDAEVYRLIEVT-GLARSEIKK 50 (66)
T ss_dssp CCHHHHHHHHHHHHGG-GSCCHHHHHHHHHHH-CCCHHHHHH
T ss_pred hhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh-CcCHHHhhH
Confidence 3555555554545443 333445688888887 999888753
No 189
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=41.45 E-value=18 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.3
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|+|||+|.+..
T Consensus 236 l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 236 IKVFVLDEADVMIA 249 (300)
T ss_dssp CSEEEETTHHHHHH
T ss_pred ceEEEEeCHHHHhh
Confidence 35799999999873
No 190
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=41.37 E-value=7.9 Score=26.99 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=27.8
Q ss_pred cCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCC
Q psy522 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN 63 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn 63 (131)
..+.+|+||.+-.++....... .........+..++..+..+....++.||.+..
T Consensus 203 ~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 6789999999999874321111 111111123344444444433344556666543
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=41.23 E-value=18 Score=23.00 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=9.9
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
+.+|+|||++...
T Consensus 116 ~~~lilDei~~~~ 128 (202)
T 2w58_A 116 VPVLMLDDLGAEA 128 (202)
T ss_dssp SSEEEEEEECCC-
T ss_pred CCEEEEcCCCCCc
Confidence 5699999997653
No 192
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=41.18 E-value=8.5 Score=25.44 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 174 ~~~lViDEah~~~~ 187 (237)
T 3bor_A 174 IKMFVLDEADEMLS 187 (237)
T ss_dssp CCEEEEESHHHHHH
T ss_pred CcEEEECCchHhhc
Confidence 46899999998863
No 193
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=41.09 E-value=31 Score=19.91 Aligned_cols=45 Identities=11% Similarity=-0.026 Sum_probs=21.9
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
-+++++......+....++. .|-.+ .+ ..+.+.++-...++.+++
T Consensus 88 ~~ii~~s~~~~~~~~~~~~~-~g~~~-~l-~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 88 VPLIAVSDELTSEQTRVLVR-MNASD-WL-HKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CCEEEEESCCCHHHHHHHHH-TTCSE-EE-ESSCCHHHHHHHHHHTC-
T ss_pred CcEEEEeCCCCHHHHHHHHH-cCcHh-hc-cCCCCHHHHHHHHHHHhc
Confidence 34555544444444444444 34444 22 234477776666666554
No 194
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=40.99 E-value=20 Score=17.11 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=10.7
Q ss_pred HHcCCCCHHHHHHh
Q psy522 116 MAKDDLSGADIKAI 129 (131)
Q Consensus 116 ~~t~g~s~~di~~l 129 (131)
-..+||+|.++..+
T Consensus 12 lkkegfspeelaal 25 (48)
T 1g6u_A 12 LKKEGFSPEELAAL 25 (48)
T ss_dssp HHHTTCSHHHHHHH
T ss_pred HHHcCCCHHHHHHH
Confidence 34689999888765
No 195
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=40.93 E-value=79 Score=24.18 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.3
Q ss_pred HHHHhcCCeEEEeccc
Q psy522 3 RVAEEHAPSIVFIDEI 18 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~ 18 (131)
.+|--..|.|+++||.
T Consensus 491 ARal~~~p~illlDEp 506 (587)
T 3qf4_A 491 ARALVKKPKVLILDDC 506 (587)
T ss_dssp HHHHHTCCSEEEEESC
T ss_pred HHHHHcCCCEEEEECC
Confidence 4566788999999996
No 196
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=40.72 E-value=16 Score=21.19 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=21.6
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMA 117 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~ 117 (131)
..+..|.|++++-.+.|+.+...-...+-..+.-+|+.
T Consensus 34 W~l~AP~PT~~eL~~wwee~q~np~yepP~q~~~laqe 71 (110)
T 2hg7_A 34 WNLRAPLPTQAELETWWEELQKNPPYEPPDQVELLAQE 71 (110)
T ss_dssp ECSSSCCCCHHHHHHHHHHHHHSCCCC-----------
T ss_pred hccCCCCCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 34556789999999999999887655543334445443
No 197
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=40.70 E-value=52 Score=18.97 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCC--CCCCeEEEeeCCCCCcccccccCCCccce
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD--SRGDVKVIMATNRIETLDPALIRPGRIDR 80 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~v~vi~ttn~~~~id~~l~~~grf~~ 80 (131)
+.++...|.+|++|-- .+.. ++. . ++..+.... ..-+++++.+....+..-.++. .|-.+
T Consensus 40 ~~~~~~~~dlvi~D~~---l~~~----~g~-----~----~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~- 101 (140)
T 3n53_A 40 EQIDHHHPDLVILDMD---IIGE----NSP-----N----LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLH-SGADD- 101 (140)
T ss_dssp HHHHHHCCSEEEEETT---C---------------C----HHHHHHTSTTCTTCCEEEEECC----CTTTTTT-CCCSE-
T ss_pred HHHhcCCCCEEEEeCC---CCCC----cHH-----H----HHHHHHcCcccCCCCEEEEecCCCHHHHHHHHh-cCCCe-
Confidence 4556778999999842 1111 111 1 222233322 2235565555555555544443 34443
Q ss_pred EEEeCCCCHHHHHHHHHHHhc
Q psy522 81 KIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~ 101 (131)
.+. .+-+.++-...++.+++
T Consensus 102 ~l~-KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 102 YLT-KPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EEE-SSCCHHHHHHHHHHHHH
T ss_pred eee-CCCCHHHHHHHHHHHHh
Confidence 222 33377777777766654
No 198
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=40.68 E-value=18 Score=24.17 Aligned_cols=9 Identities=11% Similarity=0.530 Sum_probs=7.8
Q ss_pred eEEEecccc
Q psy522 11 SIVFIDEID 19 (131)
Q Consensus 11 ~ii~iDe~d 19 (131)
.||+|||+|
T Consensus 105 kIiiLDEad 113 (212)
T 1tue_A 105 KVAMLDDAT 113 (212)
T ss_dssp SSEEEEEEC
T ss_pred CEEEEECCC
Confidence 489999998
No 199
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=40.22 E-value=33 Score=26.09 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=13.8
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.||++||=
T Consensus 396 iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 396 IAATLAKEADLYVLDQP 412 (538)
T ss_dssp HHHHHHSCCSEEEEEST
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 45677789999999994
No 200
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=39.88 E-value=29 Score=25.27 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=12.2
Q ss_pred cCCeEEEeccccccc
Q psy522 8 HAPSIVFIDEIDAVG 22 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~ 22 (131)
..|.++++||.++-+
T Consensus 354 ~~~~~lllDEp~~~L 368 (430)
T 1w1w_A 354 QPSPFFVLDEVDAAL 368 (430)
T ss_dssp SCCSEEEESSTTTTC
T ss_pred CCCCEEEeCCCcccC
Confidence 468899999997755
No 201
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=39.59 E-value=49 Score=18.95 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=11.2
Q ss_pred HHHHhcCCeEEEecc
Q psy522 3 RVAEEHAPSIVFIDE 17 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe 17 (131)
+..+...|.+|++|-
T Consensus 45 ~~l~~~~~dlvi~d~ 59 (137)
T 3hdg_A 45 RLFGLHAPDVIITDI 59 (137)
T ss_dssp HHHHHHCCSEEEECS
T ss_pred HHHhccCCCEEEEeC
Confidence 445667899999885
No 202
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=39.52 E-value=11 Score=27.13 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=15.4
Q ss_pred HhcCCeEEEecccccccC
Q psy522 6 EEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~ 23 (131)
+...+.+|+||.+-.+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 457799999999999875
No 203
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=39.22 E-value=23 Score=22.56 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=11.4
Q ss_pred CCeEEEecccccccC
Q psy522 9 APSIVFIDEIDAVGT 23 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~ 23 (131)
.|.++++||.++-+.
T Consensus 86 ~~~~llLDEp~a~LD 100 (173)
T 3kta_B 86 PAPFYLFDEIDAHLD 100 (173)
T ss_dssp CCSEEEEESTTTTCC
T ss_pred CCCEEEECCCccCCC
Confidence 457999999877553
No 204
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=38.71 E-value=8 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=14.6
Q ss_pred cCCeEEEecccccccCc
Q psy522 8 HAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~~ 24 (131)
..+.+|+||.+-.++..
T Consensus 218 ~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 218 GIFKLLIIDSIMALFRV 234 (343)
T ss_dssp SSEEEEEEETSGGGHHH
T ss_pred CCccEEEEechHHHHHH
Confidence 67899999999998743
No 205
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=38.50 E-value=37 Score=24.19 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=12.7
Q ss_pred hcC-CeEEEeccccccc
Q psy522 7 EHA-PSIVFIDEIDAVG 22 (131)
Q Consensus 7 ~~~-p~ii~iDe~d~l~ 22 (131)
... |.++++||.++-+
T Consensus 302 ~~~~~~~lllDEp~~~L 318 (371)
T 3auy_A 302 IGNRVECIILDEPTVYL 318 (371)
T ss_dssp HSSCCSEEEEESTTTTC
T ss_pred hcCCCCeEEEeCCCCcC
Confidence 456 8999999987654
No 206
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=37.48 E-value=75 Score=24.09 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.||++||== ..-+......+..++..+. .. +..+|.+|.+.+.+
T Consensus 169 iAraL~~~P~lLlLDEPT----------s~LD~~~~~~l~~~L~~l~---~~-g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 169 IAAALLRNATFYFFDEPS----------SYLDIRQRLNAARAIRRLS---EE-GKSVLVVEHDLAVL 221 (538)
T ss_dssp HHHHHHSCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHhcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 356677899999999942 2223333445555555553 22 34566666665443
No 207
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.36 E-value=57 Score=18.46 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=37.9
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCC-CCCeEEEeeCCCCCcccccccCCCccceE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRIDRK 81 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~vi~ttn~~~~id~~l~~~grf~~~ 81 (131)
+.++...|.+|++|-- .+.. .. .. ++..+..... ...++++.+......+..++. .|..+
T Consensus 44 ~~l~~~~~dlii~d~~---l~~~------~g---~~----~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~-~g~~~-- 104 (132)
T 3lte_A 44 IKLSTFEPAIMTLDLS---MPKL------DG---LD----VIRSLRQNKVANQPKILVVSGLDKAKLQQAVT-EGADD-- 104 (132)
T ss_dssp HHHHHTCCSEEEEESC---BTTB------CH---HH----HHHHHHTTTCSSCCEEEEECCSCSHHHHHHHH-HTCCE--
T ss_pred HHHHhcCCCEEEEecC---CCCC------CH---HH----HHHHHHhcCccCCCeEEEEeCCChHHHHHHHH-hChHH--
Confidence 4566788999998752 1111 11 12 2333333222 223344443333333333333 34333
Q ss_pred EEeCCC-CHHHHHHHHHHHhcCC
Q psy522 82 IEFPLP-DEKTKRRIFNIHTSRM 103 (131)
Q Consensus 82 i~~~~P-~~~~R~~il~~~l~~~ 103 (131)
++..| +.++-...++.+....
T Consensus 105 -~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 105 -YLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp -EECSSCCHHHHHHHHHHHHC--
T ss_pred -HhhCCCCHHHHHHHHHHHcCCC
Confidence 34444 7777777777776543
No 208
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=36.99 E-value=29 Score=24.58 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.6
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
..+|++||+|.+..
T Consensus 180 ~~~vViDEah~~~~ 193 (410)
T 2j0s_A 180 IKMLVLDEADEMLN 193 (410)
T ss_dssp CCEEEEETHHHHTS
T ss_pred eeEEEEccHHHHHh
Confidence 56899999999864
No 209
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.86 E-value=51 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=11.6
Q ss_pred cCCeEEEeccccccc
Q psy522 8 HAPSIVFIDEIDAVG 22 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~ 22 (131)
..|.++++||..+-+
T Consensus 240 ~~~~~lllDEp~~~L 254 (322)
T 1e69_A 240 KPSPFYVLDEVDSPL 254 (322)
T ss_dssp SCCSEEEEESCCSSC
T ss_pred CCCCEEEEeCCCCCC
Confidence 457899999986654
No 210
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=35.91 E-value=7.9 Score=23.61 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=17.3
Q ss_pred cceEEEeCCCCHHHHHHHHHHH
Q psy522 78 IDRKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 78 f~~~i~~~~P~~~~R~~il~~~ 99 (131)
|+..|.++.|+.+.|.++.+..
T Consensus 34 ~~~~IRl~iPTEERRkeLvK~a 55 (123)
T 3lhp_S 34 FKAAVRKVFPTEERIKDWLKIV 55 (123)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCeEEeeCCCHHHHHHHHHHH
Confidence 5667778888999999988655
No 211
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=35.90 E-value=68 Score=24.51 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|--..|.|+++||.-+-. +......+...+..+. . + ..+|.+|++++.+
T Consensus 495 Aral~~~p~illlDEpts~L----------D~~~~~~i~~~l~~~~---~-~-~tvi~itH~~~~~ 545 (595)
T 2yl4_A 495 ARALLKNPKILLLDEATSAL----------DAENEYLVQEALDRLM---D-G-RTVLVIAHRLSTI 545 (595)
T ss_dssp HHHHHHCCSEEEEECCCSSC----------CHHHHHHHHHHHHHHH---T-T-SEEEEECCCHHHH
T ss_pred HHHHHcCCCEEEEECcccCC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEecCHHHH
Confidence 45666789999999963322 2223344444444442 1 2 3456666665544
No 212
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=35.83 E-value=62 Score=22.37 Aligned_cols=24 Identities=13% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHhcCCeEEEecccccccCcC
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKR 25 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~ 25 (131)
++.++..+|.+++++++-.+...+
T Consensus 95 ~r~i~~~~Pk~~~~ENV~gl~~~~ 118 (331)
T 3ubt_Y 95 IRILKQKKPIFFLAENVKGMMAQR 118 (331)
T ss_dssp HHHHHHHCCSEEEEEECCGGGGCT
T ss_pred HHHHhccCCeEEEeeeeccccccc
Confidence 356678899999999999887543
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=35.74 E-value=17 Score=26.14 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=16.0
Q ss_pred HhcCCeEEEecccccccCc
Q psy522 6 EEHAPSIVFIDEIDAVGTK 24 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~ 24 (131)
+..+|.+|++|-+-++++.
T Consensus 108 ~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC
T ss_pred hccCceEEEEecccccccc
Confidence 4567999999999999854
No 214
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.43 E-value=55 Score=17.77 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=20.1
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHH
Q psy522 95 IFNIHTSRMTLAEDVNLQELIMAKDDLSGADIK 127 (131)
Q Consensus 95 il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~ 127 (131)
+++.|+...+.-.+.|+..|+.++ +++..+++
T Consensus 20 ~L~~Yy~~hk~L~EeDl~~L~~ks-kms~qqvk 51 (70)
T 2ys9_A 20 PLERYWAAHQQLRETDIPQLSQAS-RLSTQQVL 51 (70)
T ss_dssp HHHHHHHHTCCCCTTHHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHhcccchhhHHHHHHHh-CCCHHHHH
Confidence 444444444545567899999884 46666554
No 215
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=35.17 E-value=37 Score=25.47 Aligned_cols=50 Identities=22% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHhcCC--eEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 4 VAEEHAP--SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 4 ~A~~~~p--~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.|-...| .+|++||.+.=+... ....+..++..+. . +.-||.+|..++.+
T Consensus 410 ~~l~~~~~~~~lilDEp~~gld~~----------~~~~i~~~l~~~~---~--~~~vi~itH~~~~~ 461 (517)
T 4ad8_A 410 VSTVLGADTPSVVFDEVDAGIGGA----------AAIAVAEQLSRLA---D--TRQVLVVTHLAQIA 461 (517)
T ss_dssp HHHHHCCCSSEEEECSCSSSCCTH----------HHHHHHHHHHHHH---H--HSEEEEECCCHHHH
T ss_pred HHHHhCCCCCEEEEeCCcCCCCHH----------HHHHHHHHHHHHh---C--CCEEEEEecCHHHH
Confidence 3455677 999999987654322 2334444444443 1 23466777765544
No 216
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=34.96 E-value=37 Score=22.15 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=16.6
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~ 99 (131)
-.+.+|+++.|.|.++.+..
T Consensus 98 Iri~iP~lTeErRkelvK~~ 117 (185)
T 1wqg_A 98 IRVAVPQLTEERRRELVKQA 117 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 45778888999999998765
No 217
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=34.44 E-value=38 Score=22.09 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=16.3
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~ 99 (131)
-.+.+|+++.|.|.++.+..
T Consensus 98 Iri~iP~lTeErRkelvK~~ 117 (185)
T 1ise_A 98 IRVPLPPLTEERRKDLTKIV 117 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 45777888999999998765
No 218
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=34.38 E-value=38 Score=22.08 Aligned_cols=20 Identities=15% Similarity=0.389 Sum_probs=16.3
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~ 99 (131)
-.+.+|+++.|.|.++.+..
T Consensus 98 Iri~iP~lTeErRkelvK~~ 117 (185)
T 1is1_A 98 IRVPLPPLTEERRKDLVKIV 117 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 45777888999999998765
No 219
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=34.31 E-value=39 Score=22.07 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=16.6
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~ 99 (131)
-.+.+|+++.|.|.++.+..
T Consensus 98 Iri~iP~lTeErRkelvK~~ 117 (185)
T 1dd5_A 98 IRLVFPSPTTEQREKWVKKA 117 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 45778888999999998765
No 220
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=34.20 E-value=39 Score=22.04 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=16.3
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~ 99 (131)
-.+.+|+++.|.|.++.+..
T Consensus 100 Iri~iP~lTeErRkelvK~~ 119 (184)
T 1ge9_A 100 IRVTLPPLTEERRRELVRLL 119 (184)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 35777888999999998765
No 221
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.03 E-value=69 Score=18.41 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=38.1
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 82 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i 82 (131)
+.++...|.+|++|- + +.. .....+..+... ...-+++++......+.+..++.. |..+ .+
T Consensus 42 ~~l~~~~~dlvi~d~---~-~~~---------~g~~~~~~l~~~----~~~~pii~ls~~~~~~~~~~~~~~-g~~~-~l 102 (142)
T 2qxy_A 42 TFLRREKIDLVFVDV---F-EGE---------ESLNLIRRIREE----FPDTKVAVLSAYVDKDLIINSVKA-GAVD-YI 102 (142)
T ss_dssp HHHTTSCCSEEEEEC---T-TTH---------HHHHHHHHHHHH----CTTCEEEEEESCCCHHHHHHHHHH-TCSC-EE
T ss_pred HHHhccCCCEEEEeC---C-CCC---------cHHHHHHHHHHH----CCCCCEEEEECCCCHHHHHHHHHC-Ccce-eE
Confidence 445567799999885 1 111 111223322221 122234444433333334444433 4443 22
Q ss_pred EeCCCCHHHHHHHHHHHhcCCC
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMT 104 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~ 104 (131)
. .+-+.++-...++..+.+..
T Consensus 103 ~-kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 103 L-KPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp E-SSCCHHHHHHHHHHHHHC--
T ss_pred e-CCCCHHHHHHHHHHHHhhcc
Confidence 2 33377777777777776543
No 222
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=33.51 E-value=58 Score=24.29 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.6
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 227 ~~~lViDEah~l~~ 240 (563)
T 3i5x_A 227 VDYKVLDEADRLLE 240 (563)
T ss_dssp CCEEEEETHHHHTS
T ss_pred ceEEEEeCHHHHhc
Confidence 56889999999864
No 223
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=33.31 E-value=23 Score=25.00 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=10.8
Q ss_pred CeEEEeccccccc
Q psy522 10 PSIVFIDEIDAVG 22 (131)
Q Consensus 10 p~ii~iDe~d~l~ 22 (131)
-.+|++||+|.+.
T Consensus 184 ~~~vViDEah~~~ 196 (414)
T 3eiq_A 184 IKMFVLDEADEML 196 (414)
T ss_dssp CCEEEECSHHHHH
T ss_pred CcEEEEECHHHhh
Confidence 4689999999875
No 224
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=32.60 E-value=11 Score=27.18 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.7
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||=
T Consensus 151 lAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEP 167 (353)
T ss_dssp HHHHHTTCCSEEEEEST
T ss_pred HHHHHHhCCCEEEEECC
Confidence 35667788999999995
No 225
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=32.58 E-value=74 Score=18.34 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=10.7
Q ss_pred HHHHhcCCeEEEecc
Q psy522 3 RVAEEHAPSIVFIDE 17 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe 17 (131)
+..+...|.++++|-
T Consensus 42 ~~l~~~~~dlvllD~ 56 (137)
T 3cfy_A 42 QFIERSKPQLIILDL 56 (137)
T ss_dssp HHHHHHCCSEEEECS
T ss_pred HHHHhcCCCEEEEec
Confidence 345567789999874
No 226
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=32.47 E-value=26 Score=23.04 Aligned_cols=12 Identities=42% Similarity=0.504 Sum_probs=9.9
Q ss_pred CCeEEEeccccc
Q psy522 9 APSIVFIDEIDA 20 (131)
Q Consensus 9 ~p~ii~iDe~d~ 20 (131)
.-.+|++||+|.
T Consensus 176 ~~~~lVlDEah~ 187 (235)
T 3llm_A 176 GISHVIVDEIHE 187 (235)
T ss_dssp TCCEEEECCTTS
T ss_pred CCcEEEEECCcc
Confidence 457899999996
No 227
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=32.44 E-value=27 Score=24.07 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 148 ~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 148 VKYFILDEADEMLN 161 (367)
T ss_dssp CCEEEEETHHHHHT
T ss_pred CCEEEEeCchHhhh
Confidence 46899999999853
No 228
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=32.40 E-value=99 Score=23.92 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=30.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.||++||-=+ .-+......+..++..+. .. +..+|.+|.+.+.+
T Consensus 239 IAraL~~~P~lLlLDEPTs----------~LD~~~~~~l~~~L~~l~---~~-g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSS----------YLDIRQRLKVARVIRRLA---NE-GKAVLVVEHDLAVL 291 (607)
T ss_dssp HHHHHHSCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHH---hc-CCEEEEEecChHHH
Confidence 3566778999999999422 223333444555555543 22 34566677665544
No 229
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.32 E-value=72 Score=18.16 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=25.4
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
-+++++......+....++.. |..+ .+. .+-+.++-...++..+.+.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~-g~~~-~l~-kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKE-GASD-FVV-KPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHT-TCCE-EEE-ESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHc-Cchh-eee-CCCCHHHHHHHHHHHHHhc
Confidence 356666555444444444443 4443 232 2337777777777776654
No 230
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=31.88 E-value=64 Score=17.41 Aligned_cols=33 Identities=3% Similarity=0.123 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMA 117 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~ 117 (131)
...+.++..+.|..+|...++++.-.|..+...
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~ 42 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKM 42 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHH
Confidence 456899999999999999998888788776654
No 231
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=31.83 E-value=24 Score=24.64 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=13.4
Q ss_pred hcCCe--EEEecccccccC
Q psy522 7 EHAPS--IVFIDEIDAVGT 23 (131)
Q Consensus 7 ~~~p~--ii~iDe~d~l~~ 23 (131)
++.+. +|+||.+..+..
T Consensus 177 ~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 177 KNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp TSSSCCEEEEEECGGGSBC
T ss_pred hcCCCCeEEEEeCchhcCC
Confidence 34566 999999998864
No 232
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=31.76 E-value=70 Score=22.77 Aligned_cols=11 Identities=36% Similarity=0.313 Sum_probs=9.6
Q ss_pred cCCeEEEeccc
Q psy522 8 HAPSIVFIDEI 18 (131)
Q Consensus 8 ~~p~ii~iDe~ 18 (131)
..|.++++||-
T Consensus 302 ~~p~~lllDEp 312 (365)
T 3qf7_A 302 GRLDAFFIDEG 312 (365)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEEEeCC
Confidence 68999999994
No 233
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.76 E-value=75 Score=18.17 Aligned_cols=16 Identities=6% Similarity=0.083 Sum_probs=11.8
Q ss_pred HHHHHhcCCeEEEecc
Q psy522 2 FRVAEEHAPSIVFIDE 17 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe 17 (131)
++.++...|.+|++|-
T Consensus 43 ~~~l~~~~~dlvi~d~ 58 (140)
T 3grc_A 43 LEQVARRPYAAMTVDL 58 (140)
T ss_dssp HHHHHHSCCSEEEECS
T ss_pred HHHHHhCCCCEEEEeC
Confidence 3456678899999875
No 234
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=31.56 E-value=20 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=8.2
Q ss_pred CCeEEEeccccccc
Q psy522 9 APSIVFIDEIDAVG 22 (131)
Q Consensus 9 ~p~ii~iDe~d~l~ 22 (131)
...+|++||+|.+.
T Consensus 162 ~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 162 DFSLIIIDECHHTN 175 (216)
T ss_dssp GCSEEEETTC----
T ss_pred cccEEEEECchhhc
Confidence 34689999999985
No 235
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=31.20 E-value=16 Score=24.59 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=11.3
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 202 l~~lViDEah~l~~ 215 (262)
T 3ly5_A 202 LQCLVIDEADRILD 215 (262)
T ss_dssp CCEEEECSHHHHHH
T ss_pred CCEEEEcChHHHhh
Confidence 46799999998764
No 236
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=31.15 E-value=82 Score=18.40 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=39.9
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 82 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i 82 (131)
+.++...|.+|++|-- .+.. .. ...+..+.. ....-+++++......+....++.. |-.+ .+
T Consensus 60 ~~l~~~~~dlii~D~~---l~~~------~g---~~~~~~l~~----~~~~~~ii~ls~~~~~~~~~~~~~~-g~~~-~l 121 (150)
T 4e7p_A 60 QLLEKESVDIAILDVE---MPVK------TG---LEVLEWIRS----EKLETKVVVVTTFKRAGYFERAVKA-GVDA-YV 121 (150)
T ss_dssp HHHTTSCCSEEEECSS---CSSS------CH---HHHHHHHHH----TTCSCEEEEEESCCCHHHHHHHHHT-TCSE-EE
T ss_pred HHhhccCCCEEEEeCC---CCCC------cH---HHHHHHHHH----hCCCCeEEEEeCCCCHHHHHHHHHC-CCcE-EE
Confidence 4456677899998742 1111 11 123333322 1122234444443344444444443 4333 22
Q ss_pred EeCCCCHHHHHHHHHHHhcCC
Q psy522 83 EFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~ 103 (131)
. .+-+.++-...++.++.+.
T Consensus 122 ~-Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 122 L-KERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp E-TTSCHHHHHHHHHHHHTTC
T ss_pred e-cCCCHHHHHHHHHHHHcCC
Confidence 2 3337788777888877654
No 237
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=31.06 E-value=1.5e+02 Score=22.50 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
.+|-...|.|+++||==+- -.......+..++..+. . +..+|.+|.+.+.+
T Consensus 150 A~aL~~~p~illlDEPts~----------LD~~~~~~l~~~l~~l~---~--g~tii~vsHdl~~~ 200 (538)
T 3ozx_A 150 AASLLREADVYIFDQPSSY----------LDVRERMNMAKAIRELL---K--NKYVIVVDHDLIVL 200 (538)
T ss_dssp HHHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHC---T--TSEEEEECSCHHHH
T ss_pred HHHHHcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHh---C--CCEEEEEEeChHHH
Confidence 4566788999999995222 22233445555555553 2 34566667665544
No 238
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=31.04 E-value=54 Score=25.38 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=29.0
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
+.+|-...|.++++||==. .-+......+..++..+. ...+..+|.+|.+.+.+
T Consensus 482 iAraL~~~p~lLlLDEPt~----------~LD~~~~~~l~~~l~~l~---~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 482 IAATLLRDADIYLLDEPSA----------YLDVEQRLAVSRAIRHLM---EKNEKTALVVEHDVLMI 535 (607)
T ss_dssp HHHHHTSCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHHHH
T ss_pred HHHHHHhCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHH
Confidence 3466678899999999422 222233344444544442 12233456666665443
No 239
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=30.91 E-value=68 Score=24.21 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=12.0
Q ss_pred CCeEEEecccccccC
Q psy522 9 APSIVFIDEIDAVGT 23 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~ 23 (131)
.-.+|++||+|.+..
T Consensus 175 ~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 175 FVDYKVLDEADRLLE 189 (579)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCEEEEEChHHhhc
Confidence 356889999999863
No 240
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=30.73 E-value=11 Score=27.24 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHHHhcCCeEEEeccc
Q psy522 2 FRVAEEHAPSIVFIDEI 18 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~ 18 (131)
+.+|-...|.++++||=
T Consensus 144 lArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 144 IARALVKEPEVLLLDEP 160 (362)
T ss_dssp HHHHHTTCCSEEEEESG
T ss_pred HHHHHHcCCCEEEEECc
Confidence 35667788999999995
No 241
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=29.83 E-value=87 Score=18.29 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=39.6
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcccccccCCCccceEE
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 82 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id~~l~~~grf~~~i 82 (131)
+.++...|.+|++|-- .+.. .. ...+..+.. ....-+++++......+.+..++. .|-.+ .+
T Consensus 55 ~~l~~~~~dlii~d~~---l~~~------~g---~~~~~~l~~----~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~-~l 116 (152)
T 3eul_A 55 ELIKAHLPDVALLDYR---MPGM------DG---AQVAAAVRS----YELPTRVLLISAHDEPAIVYQALQ-QGAAG-FL 116 (152)
T ss_dssp HHHHHHCCSEEEEETT---CSSS------CH---HHHHHHHHH----TTCSCEEEEEESCCCHHHHHHHHH-TTCSE-EE
T ss_pred HHHHhcCCCEEEEeCC---CCCC------CH---HHHHHHHHh----cCCCCeEEEEEccCCHHHHHHHHH-cCCCE-EE
Confidence 4456678999998852 1111 11 123333322 112223444444333434444443 44443 22
Q ss_pred EeCCCCHHHHHHHHHHHhcCCC
Q psy522 83 EFPLPDEKTKRRIFNIHTSRMT 104 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~~~~ 104 (131)
. .+-+.++-...++.++.+..
T Consensus 117 ~-Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 117 L-KDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp E-TTCCHHHHHHHHHHHHHCC-
T ss_pred e-cCCCHHHHHHHHHHHHcCCe
Confidence 2 33477777777777776543
No 242
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.82 E-value=90 Score=18.46 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=22.8
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
-+++++......+.+..++.. |-.+ .+ ..+-+.++-...++.++.
T Consensus 112 ~~ii~ls~~~~~~~~~~~~~~-g~~~-~l-~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 112 ARVIMISALGKEQLVKDCLIK-GAKT-FI-VKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEEESCCCHHHHHHHHHT-TCSE-EE-ESSCCHHHHHHHHHHTTC
T ss_pred CcEEEEeccCcHHHHHHHHHc-CCCE-EE-eCCCCHHHHHHHHHHHhc
Confidence 345555554455555444443 4333 22 233377776666666543
No 243
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=29.49 E-value=45 Score=22.24 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.6
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~ 99 (131)
-++.+|+++.|.|.++.+..
T Consensus 122 Iri~iP~LTeErRkelvK~a 141 (209)
T 4gfq_A 122 IRIAFPALTEERRRDLVKVV 141 (209)
T ss_dssp EEEECCBCCHHHHHHHHHHH
T ss_pred eeeeCCCccHHHHHHHHHHH
Confidence 45778888999999998765
No 244
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=29.19 E-value=52 Score=19.18 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=29.0
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCC
Q psy522 84 FPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121 (131)
Q Consensus 84 ~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 121 (131)
+..++.++|..-++..|.......+.-+++|..+..|+
T Consensus 60 LDl~sdeeR~~~LqelL~~C~~ptE~FI~eLL~rlkgl 97 (99)
T 1j2m_A 60 LELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGL 97 (99)
T ss_dssp HCCTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTTT
T ss_pred hcCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 46789999999999998887766555577777777664
No 245
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=28.92 E-value=17 Score=31.93 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=36.6
Q ss_pred HHHHhcCCeEEEecccccccCcCCCC---CCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCcc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDS---NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 68 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~i 68 (131)
..++..+|++|++|-+.++.++..-. ++.+..--.+.+++.+..+.+...+.++.+|++....+.+
T Consensus 1503 ~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---
T ss_pred HHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccccc
Confidence 45788899999999999999876322 1221111123333444444443345567777776654443
No 246
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=28.82 E-value=30 Score=20.22 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=20.6
Q ss_pred CCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 105 LAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 105 ~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
...++.+..+...+.|++.+||+.|.
T Consensus 8 ~~~~~E~~p~~~l~~~l~~sdlE~Lt 33 (102)
T 1rfy_A 8 VTKKVELRPLIGLTRGLPPTDLETIT 33 (102)
T ss_dssp --CCCSSTHHHHHHTTCCHHHHHHHH
T ss_pred ccchhccccchhhhcCCCHHHHHHHH
Confidence 34567788889999999999999874
No 247
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.60 E-value=79 Score=17.41 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=10.5
Q ss_pred HHHHhcCCeEEEecc
Q psy522 3 RVAEEHAPSIVFIDE 17 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe 17 (131)
+..+...|.++++|-
T Consensus 38 ~~~~~~~~dlil~D~ 52 (121)
T 2pl1_A 38 YYLNEHIPDIAIVDL 52 (121)
T ss_dssp HHHHHSCCSEEEECS
T ss_pred HHHhccCCCEEEEec
Confidence 345567789998863
No 248
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=27.83 E-value=54 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=11.7
Q ss_pred CCeEEEecccccccC
Q psy522 9 APSIVFIDEIDAVGT 23 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~ 23 (131)
.-.+|++||+|.+..
T Consensus 152 ~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 152 HIKHFILDECDKMLE 166 (391)
T ss_dssp TCSEEEECSHHHHTS
T ss_pred ccCEEEEeCHHHHhh
Confidence 346799999999854
No 249
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=27.82 E-value=23 Score=24.02 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.2
Q ss_pred cCCeEEEecccccccC
Q psy522 8 HAPSIVFIDEIDAVGT 23 (131)
Q Consensus 8 ~~p~ii~iDe~d~l~~ 23 (131)
..|.+|+||++-.+..
T Consensus 132 ~~~~livlDe~~~~~~ 147 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHI 147 (279)
T ss_dssp TTCSEEEEECGGGGCC
T ss_pred CCCCEEEECCHHHhcC
Confidence 4699999999988754
No 250
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=27.56 E-value=29 Score=20.26 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=19.2
Q ss_pred CCCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 105 LAEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 105 ~~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
...++.+..+...+.|++.+||+.|.
T Consensus 8 ~~~~~E~~p~~~l~~~l~~sdlE~Lt 33 (102)
T 2hjd_A 8 VSDTFELRPVIGLTRGLSSADIETLT 33 (102)
T ss_dssp ----CCSTHHHHHHTTCCHHHHHHHH
T ss_pred ccchhccccchhhhcCCCHHHHHHHH
Confidence 34566788888999999999999874
No 251
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=27.38 E-value=58 Score=17.04 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=16.1
Q ss_pred EeCCCCHHHHHHHHHHHhc
Q psy522 83 EFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 83 ~~~~P~~~~R~~il~~~l~ 101 (131)
+.-.|+...|+++|..+++
T Consensus 40 Y~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 40 FYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp GGGSSCHHHHHHHHHHHHT
T ss_pred eeecCChHHHHHHHHHHhh
Confidence 3468999999999999875
No 252
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.38 E-value=1.1e+02 Score=19.67 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=14.8
Q ss_pred HHhcCCeEEEeccccccc
Q psy522 5 AEEHAPSIVFIDEIDAVG 22 (131)
Q Consensus 5 A~~~~p~ii~iDe~d~l~ 22 (131)
++...|.+|++|++..+.
T Consensus 124 ~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 124 IRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHHHTCCEEEEETSGGGT
T ss_pred HHHhCCCEEEECCchHhh
Confidence 345679999999999886
No 253
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=27.34 E-value=53 Score=25.52 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=11.4
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-++|++||++.+..
T Consensus 139 ~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 139 VSCLVVDEIHLLDS 152 (702)
T ss_dssp CCEEEETTGGGGGC
T ss_pred cCEEEEeeeeecCC
Confidence 36899999998864
No 254
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=27.24 E-value=77 Score=17.64 Aligned_cols=32 Identities=3% Similarity=-0.028 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy522 85 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIM 116 (131)
Q Consensus 85 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~ 116 (131)
...+.+++.+.|..+|...++++.-.|.....
T Consensus 12 ~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~ 43 (82)
T 2dod_A 12 AIVPLEARMKQFKDMLLERGVSAFSTWEKELH 43 (82)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHcCcCCCCCHHHHHH
Confidence 45688999999999999999888777766544
No 255
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=26.99 E-value=36 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=14.9
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCC
Q psy522 81 KIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 81 ~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
......+....+...+..++...
T Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~ 241 (395)
T 3pey_A 219 QLYMDCKNEADKFDVLTELYGLM 241 (395)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCchHHHHHHHHHHHHhc
Confidence 34455667777777777776644
No 256
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=26.70 E-value=90 Score=19.69 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=10.5
Q ss_pred CCeEEEecccccc
Q psy522 9 APSIVFIDEIDAV 21 (131)
Q Consensus 9 ~p~ii~iDe~d~l 21 (131)
.+.+|+|||+..+
T Consensus 76 ~~dvviIDE~Q~~ 88 (184)
T 2orw_A 76 DTRGVFIDEVQFF 88 (184)
T ss_dssp TEEEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 4679999999765
No 257
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=26.68 E-value=38 Score=22.11 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.3
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q psy522 80 RKIEFPLPDEKTKRRIFNIH 99 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~ 99 (131)
-.+.+|+++.|.|.++.+..
T Consensus 99 Iri~iP~lTeErRkelvK~~ 118 (185)
T 1eh1_A 99 LYINIPPLTEERRKDLVRAV 118 (185)
T ss_dssp EEEECCCCCTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 45777888999999998765
No 258
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=26.65 E-value=54 Score=23.94 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.5
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 236 ~~~iViDEah~~~~ 249 (479)
T 3fmp_B 236 IKVFVLDEADVMIA 249 (479)
T ss_dssp CCEEEECCHHHHHT
T ss_pred CCEEEEECHHHHhh
Confidence 46899999998864
No 259
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=26.58 E-value=17 Score=26.68 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=15.0
Q ss_pred HhcCCeEEEecccccccC
Q psy522 6 EEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~ 23 (131)
+.+.|.+|+||.+..+..
T Consensus 307 ~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 307 SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHSCCCEEEEECGGGCBC
T ss_pred HHcCCCEEEEcChhhcCC
Confidence 457899999999998864
No 260
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=25.79 E-value=52 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.3
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 164 ~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 164 CSLFIMDEADKMLS 177 (400)
T ss_dssp CCEEEEESHHHHSS
T ss_pred CCEEEEeCchHhhh
Confidence 47899999998753
No 261
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=25.65 E-value=28 Score=22.48 Aligned_cols=31 Identities=6% Similarity=-0.045 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy522 87 PDEKTKRRIFNIHTSRMTLAEDVNLQELIMA 117 (131)
Q Consensus 87 P~~~~R~~il~~~l~~~~~~~~~~~~~la~~ 117 (131)
|++++|.+.|..+|...++++.-.|..+...
T Consensus 2 ~s~ee~~~~F~~lL~~~~V~~~~~We~~~~~ 32 (190)
T 3hfh_A 2 PLGSARMXQFXDMLLERGVSAFSTWEXELHX 32 (190)
T ss_dssp CCSCHHHHHHHHHHHHTTCCSSSCHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHcCcCCCCchhhhhhh
Confidence 8899999999999998888877777766543
No 262
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=25.58 E-value=98 Score=17.49 Aligned_cols=47 Identities=11% Similarity=-0.097 Sum_probs=24.3
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCC
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 103 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~ 103 (131)
-+++++.+.........++. .|-.+ .+ ..+-+.++-...++..+...
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~-~g~~~-~l-~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 76 FPILMLTAKDEEFDKVLGLE-LGADD-YM-TKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp CCEEEEECTTCCCCHHHHHH-TTCCE-EE-ESSCCHHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHh-CCCCE-EE-ECCCCHHHHHHHHHHHHHhh
Confidence 35555555444444444443 34444 22 23347777667777766543
No 263
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=25.57 E-value=30 Score=25.80 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.7
Q ss_pred HhcCCeEEEecccccccC
Q psy522 6 EEHAPSIVFIDEIDAVGT 23 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~ 23 (131)
+++.|.+|+||-+..+..
T Consensus 351 ~~~~~~lvVID~l~~l~~ 368 (503)
T 1q57_A 351 SGLGCDVIILDHISIVVS 368 (503)
T ss_dssp HTTCCSEEEEECTTCCCS
T ss_pred HhcCCCEEEEccchhcCC
Confidence 456899999999988754
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=25.46 E-value=39 Score=22.32 Aligned_cols=18 Identities=11% Similarity=0.050 Sum_probs=14.1
Q ss_pred HHHHHhcCCeEEEecccc
Q psy522 2 FRVAEEHAPSIVFIDEID 19 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d 19 (131)
+.+|-...|.++++||--
T Consensus 141 lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHSCCSEEEEESTT
T ss_pred HHHHHhcCCCEEEEECcc
Confidence 356677889999999953
No 265
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=24.72 E-value=80 Score=22.38 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=12.2
Q ss_pred CCeEEEecccccccC
Q psy522 9 APSIVFIDEIDAVGT 23 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~ 23 (131)
...+|++||++.+..
T Consensus 125 ~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 125 DVSLIVFDEAHRAVG 139 (494)
T ss_dssp SCSEEEEETGGGCST
T ss_pred hceEEEEECCcccCC
Confidence 457899999999863
No 266
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=24.62 E-value=43 Score=23.52 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.6
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-.+|++||+|.+..
T Consensus 169 ~~~iViDEah~~~~ 182 (412)
T 3fht_A 169 IKVFVLDEADVMIA 182 (412)
T ss_dssp CCEEEEETHHHHHS
T ss_pred CcEEEEeCHHHHhh
Confidence 46899999998864
No 267
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A {Sinorhizobium meliloti} SCOP: c.76.1.0 PDB: 3szz_A 3t00_A 3t01_A 3t02_A
Probab=24.14 E-value=83 Score=23.11 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.7
Q ss_pred HhcCCeEEEecccccccCcC
Q psy522 6 EEHAPSIVFIDEIDAVGTKR 25 (131)
Q Consensus 6 ~~~~p~ii~iDe~d~l~~~~ 25 (131)
+..+|.++++.++|......
T Consensus 201 ~~~~p~l~y~~~~D~~gH~~ 220 (427)
T 3szy_A 201 REFRPDIMYLTTTDYVQHKY 220 (427)
T ss_dssp HHTCCSEEEEECCCHHHHHC
T ss_pred HhcCCCEEEEcccchhhccC
Confidence 56789999999999877654
No 268
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=24.11 E-value=51 Score=22.19 Aligned_cols=12 Identities=17% Similarity=0.244 Sum_probs=10.5
Q ss_pred eEEEeccccccc
Q psy522 11 SIVFIDEIDAVG 22 (131)
Q Consensus 11 ~ii~iDe~d~l~ 22 (131)
.+|++||++.+.
T Consensus 227 ~~vIiDEaH~~~ 238 (282)
T 1rif_A 227 GMMMNDECHLAT 238 (282)
T ss_dssp EEEEEETGGGCC
T ss_pred CEEEEECCccCC
Confidence 689999999985
No 269
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=23.68 E-value=38 Score=22.61 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=14.5
Q ss_pred HHHHHhcCCeEEEeccccc
Q psy522 2 FRVAEEHAPSIVFIDEIDA 20 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~ 20 (131)
+.+|-...|.++++||--+
T Consensus 150 lAral~~~p~lllLDEPts 168 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATA 168 (243)
T ss_dssp HHHHHHHCCSEEEEECCSC
T ss_pred HHHHHhcCCCEEEEECCcc
Confidence 3466678899999999643
No 270
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=23.67 E-value=96 Score=19.83 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccHH-HHHHH
Q psy522 86 LPDEKTKRRIFNIHTSRMTLAEDVNLQ-ELIMA 117 (131)
Q Consensus 86 ~P~~~~R~~il~~~l~~~~~~~~~~~~-~la~~ 117 (131)
+.++.+|.+.++.++....+..-.++. .|.+.
T Consensus 15 ~~~K~~R~~~I~~iI~~~~I~tQeEL~~~L~~~ 47 (170)
T 3lap_A 15 AANRAGRQARIVAILSSAQVRSQNELAALLAAE 47 (170)
T ss_dssp -CCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 348999999999999888777544443 34443
No 271
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=23.65 E-value=64 Score=23.34 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.5
Q ss_pred CeEEEecccccccC
Q psy522 10 PSIVFIDEIDAVGT 23 (131)
Q Consensus 10 p~ii~iDe~d~l~~ 23 (131)
-..|++||+|.+..
T Consensus 204 ~~~lVlDEah~~~~ 217 (434)
T 2db3_A 204 TRFVVLDEADRMLD 217 (434)
T ss_dssp CCEEEEETHHHHTS
T ss_pred CCeEEEccHhhhhc
Confidence 46899999999864
No 272
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=23.09 E-value=1.1e+02 Score=23.64 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=30.4
Q ss_pred HHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 3 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
.+|-...|.|+++||-=+- -.......+..++..+. ..+ ..+|.+|.+.+.+.
T Consensus 233 AraL~~~p~llllDEPts~----------LD~~~~~~l~~~l~~l~---~~g-~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSY----------LDVKQRLNAAQIIRSLL---APT-KYVICVEHDLSVLD 285 (608)
T ss_dssp HHHHHSCCSEEEEECTTTT----------CCHHHHHHHHHHHHGGG---TTT-CEEEEECSCHHHHH
T ss_pred HHHHHhCCCEEEEECcccC----------CCHHHHHHHHHHHHHHH---hCC-CEEEEEeCCHHHHH
Confidence 4566788999999995222 22233344555555443 333 35666677655543
No 273
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=22.17 E-value=1.4e+02 Score=24.74 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHhcCCeEEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCccc
Q psy522 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69 (131)
Q Consensus 2 F~~A~~~~p~ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~id 69 (131)
+.+|-...|.||++||--. .-+......+..++.. . +..+|.+|.+.+.+.
T Consensus 559 LArAL~~~P~lLLLDEPTs----------~LD~~~~~~l~~~L~~------~-g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTN----------HLDTVNVAWLVNYLNT------C-GITSITISHDSVFLD 609 (986)
T ss_dssp HHHHHHTTCSEEEEESTTT----------TCCHHHHHHHHHHHHH------S-CSEEEEECSCHHHHH
T ss_pred HHHHHhcCCCEEEEECCcc----------CCCHHHHHHHHHHHHh------C-CCEEEEEECCHHHHH
Confidence 3456678899999999422 2223334455555543 1 345666677655543
No 274
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=22.12 E-value=1.6e+02 Score=22.82 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=26.7
Q ss_pred HHHHhcCCe--EEEecccccccCcCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCeEEEeeCCCCCc
Q psy522 3 RVAEEHAPS--IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 67 (131)
Q Consensus 3 ~~A~~~~p~--ii~iDe~d~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~ttn~~~~ 67 (131)
.+|-...|. +|++||==+= -+......+..++..+. .. +..+|.+|.+.+.
T Consensus 214 ArAL~~~p~~~lLlLDEPtsg----------LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 214 ATQIGSRLTGVLYVLDEPSIG----------LHQRDNDRLIATLKSMR---DL-GNTLIVVEHDEDT 266 (670)
T ss_dssp HHHHHTCCCSCEEEEECTTTT----------CCGGGHHHHHHHHHHHH---HT-TCEEEEECCCHHH
T ss_pred HHHHhhCCCCCEEEEECCccC----------CCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHH
Confidence 345556777 9999994222 12222344444554443 22 3456666766543
No 275
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=22.00 E-value=1.8e+02 Score=21.04 Aligned_cols=18 Identities=6% Similarity=0.351 Sum_probs=14.5
Q ss_pred HHHhcCCeEEEecccccc
Q psy522 4 VAEEHAPSIVFIDEIDAV 21 (131)
Q Consensus 4 ~A~~~~p~ii~iDe~d~l 21 (131)
.++...+.++++||++.+
T Consensus 268 slrG~~~~~viiDE~a~~ 285 (385)
T 2o0j_A 268 AVRGNSFAMIYIEDCAFI 285 (385)
T ss_dssp HHHTSCCSEEEEESGGGS
T ss_pred CccCCCCCEEEechhhhc
Confidence 346677889999999876
No 276
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.45 E-value=1.2e+02 Score=17.20 Aligned_cols=48 Identities=13% Similarity=-0.114 Sum_probs=24.6
Q ss_pred CCeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhcCCC
Q psy522 54 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT 104 (131)
Q Consensus 54 ~~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~~~~ 104 (131)
-+++++......+.+..++.. |-.+ .+. .+-+.++-...++.++++..
T Consensus 82 ~~ii~ls~~~~~~~~~~~~~~-g~~~-~l~-KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 82 TPVIIATKSDNPGYRHAALKF-KVSD-YIL-KPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp CCEEEEESCCCHHHHHHHHHS-CCSE-EEE-SSCCTTHHHHHHHHHHCC--
T ss_pred CCEEEEeCCCCHHHHHHHHHc-CCCE-EEE-CCCCHHHHHHHHHHHHHhcc
Confidence 345555544444455444443 4333 222 33367777777777776543
No 277
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=21.28 E-value=79 Score=16.18 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=23.8
Q ss_pred CHHHHHHHHH---HHhcCCCCCCcccHHHH-HHHcCCCCHHHHHHhh
Q psy522 88 DEKTKRRIFN---IHTSRMTLAEDVNLQEL-IMAKDDLSGADIKAIC 130 (131)
Q Consensus 88 ~~~~R~~il~---~~l~~~~~~~~~~~~~l-a~~t~g~s~~di~~l~ 130 (131)
+...|.+++. .+|++-.+...---..+ --...|+|..||...+
T Consensus 5 ~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al 51 (54)
T 3ff5_A 5 SPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAF 51 (54)
T ss_dssp CHHHHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445555554 45666555422211222 2236899999998764
No 278
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=21.17 E-value=77 Score=17.91 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=15.2
Q ss_pred EEeCCCCHHHHHHHHHHHh
Q psy522 82 IEFPLPDEKTKRRIFNIHT 100 (131)
Q Consensus 82 i~~~~P~~~~R~~il~~~l 100 (131)
|.-..|+.++|.+|+..+-
T Consensus 63 i~P~~P~~~eR~~I~~~~~ 81 (85)
T 2lqt_A 63 VKPFMPTAAERDEILRAVG 81 (85)
T ss_dssp CSCSSCCHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHhc
Confidence 4446799999999998774
No 279
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=21.17 E-value=1.3e+02 Score=17.74 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=27.5
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHcCCCCHHHHHHh
Q psy522 80 RKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 129 (131)
Q Consensus 80 ~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l 129 (131)
..++-..|+..+-..+-+. + ..+|..+|.. -|++..||..+
T Consensus 15 ~~~~~~~~t~~~l~~Ia~~-L-------G~~Wk~LAR~-LGlse~dId~I 55 (115)
T 2o71_A 15 SHILNSSPSDRQINQLAQR-L-------GPEWEPMVLS-LGLSQTDIYRC 55 (115)
T ss_dssp -CGGGSCCCHHHHHHHHHH-C-------CTTHHHHHHH-TTCCHHHHHHH
T ss_pred chhccCCCCHHHHHHHHHH-H-------hhhHHHHHHH-cCCCHHHHHHH
Confidence 3445578888865555332 2 2479999886 58999999875
No 280
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=21.16 E-value=1.2e+02 Score=16.81 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=21.4
Q ss_pred CeEEEeeCCCCCcccccccCCCccceEEEeCCCCHHHHHHHHHHHhc
Q psy522 55 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 101 (131)
Q Consensus 55 ~v~vi~ttn~~~~id~~l~~~grf~~~i~~~~P~~~~R~~il~~~l~ 101 (131)
+++++.+....+....++. .|..++ + ..+.+.++-...++..+.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~-~g~~~~-l-~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQESKE-LGALTH-F-AKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHHHH-HTCCCE-E-ESSCCHHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHHHh-cChHhh-c-cCCCCHHHHHHHHHHHhc
Confidence 4444444333334444443 344442 2 234477776666666654
No 281
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=21.04 E-value=42 Score=26.74 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=11.1
Q ss_pred cCCeEEEeccccc
Q psy522 8 HAPSIVFIDEIDA 20 (131)
Q Consensus 8 ~~p~ii~iDe~d~ 20 (131)
..+.+|+|||++.
T Consensus 207 ~~~~~lIlDEah~ 219 (773)
T 2xau_A 207 SRYSCIILDEAHE 219 (773)
T ss_dssp TTEEEEEECSGGG
T ss_pred cCCCEEEecCccc
Confidence 5688999999985
No 282
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=20.86 E-value=47 Score=23.46 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=10.7
Q ss_pred eEEEecccccccC
Q psy522 11 SIVFIDEIDAVGT 23 (131)
Q Consensus 11 ~ii~iDe~d~l~~ 23 (131)
.+|++||+|.+..
T Consensus 177 ~~iViDEah~~~~ 189 (417)
T 2i4i_A 177 KYLVLDEADRMLD 189 (417)
T ss_dssp CEEEESSHHHHHH
T ss_pred cEEEEEChhHhhc
Confidence 5799999998764
No 283
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=20.24 E-value=32 Score=24.07 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=11.9
Q ss_pred CCeEEEecccccccC
Q psy522 9 APSIVFIDEIDAVGT 23 (131)
Q Consensus 9 ~p~ii~iDe~d~l~~ 23 (131)
.-++|++||+|.+..
T Consensus 162 ~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 162 KIKMFILDEADEMLS 176 (394)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred hCcEEEEEChHHhhC
Confidence 357899999999753
No 284
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.19 E-value=1.4e+02 Score=17.34 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=10.4
Q ss_pred HHHHhcCCeEEEecc
Q psy522 3 RVAEEHAPSIVFIDE 17 (131)
Q Consensus 3 ~~A~~~~p~ii~iDe 17 (131)
+.++...|.+|++|-
T Consensus 45 ~~l~~~~~dlvi~d~ 59 (154)
T 2rjn_A 45 EALKGTSVQLVISDM 59 (154)
T ss_dssp HHHTTSCCSEEEEES
T ss_pred HHHhcCCCCEEEEec
Confidence 344566788999874
No 285
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid; 1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Probab=20.15 E-value=55 Score=20.58 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=22.5
Q ss_pred HHHHHhcCCCC-CCcccHHHHHHHcCCCCHHHHHHhh
Q psy522 95 IFNIHTSRMTL-AEDVNLQELIMAKDDLSGADIKAIC 130 (131)
Q Consensus 95 il~~~l~~~~~-~~~~~~~~la~~t~g~s~~di~~l~ 130 (131)
.|-+......+ .++ -+.-+...++|.|+.||..+.
T Consensus 21 aWVKvvEek~f~spE-vipmFsAlSeg~TP~Din~mL 56 (149)
T 2xgu_A 21 AWLKQVQEHGLTHPA-TITYFGVISINFTSVDINMLL 56 (149)
T ss_dssp HHHHHHHHHCTTSHH-HHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhccCChH-HHHHHHHHhCCCChHHHHHHH
Confidence 34444444443 333 355577889999999998875
No 286
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=20.12 E-value=7.2 Score=27.29 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=9.6
Q ss_pred CCeEEEecccccc
Q psy522 9 APSIVFIDEIDAV 21 (131)
Q Consensus 9 ~p~ii~iDe~d~l 21 (131)
.+.+|+|||++..
T Consensus 214 ~~~lLiiDdig~~ 226 (308)
T 2qgz_A 214 NVPVLILDDIGAE 226 (308)
T ss_dssp TSSEEEEETCCC-
T ss_pred CCCEEEEcCCCCC
Confidence 3569999999654
Done!