AmiGO: BLAST Results


BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	1.2e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	3.0e-62
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	4.8e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Bos taurus	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	6.2e-62
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	6.2e-62
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	7.9e-62
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	1.3e-61
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	2.2e-59
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	3.6e-57
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	4.6e-57
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	2.5e-56
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	1.4e-55
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	1.4e-55
BLAST match view associations BLAST with RPT2 RPT2 RPT2	gene_product from Candida albicans	3.5e-52
BLAST match view associations BLAST with RPT2 RPT2 RPT2 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	3.5e-52
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-51
BLAST match view associations BLAST with C10G11.8 C10G11.8 C10G11.8	gene from Caenorhabditis elegans	3.8e-46
BLAST match view associations BLAST with Rpt3 Rpt3 Rpt3 Regulatory particle triple-A ATPase 3	protein from Drosophila melanogaster	2.8e-43
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Homo sapiens	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Macaca fascicularis	3.2e-42
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein from Mus musculus	3.2e-42
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene from Rattus norvegicus	3.2e-42
BLAST match view associations BLAST with rpt-3 rpt-3 rpt-3	gene from Caenorhabditis elegans	1.4e-41
BLAST match view associations BLAST with Rpt3R Rpt3R Rpt3R Regulatory particle triple-A ATPase 3-related	protein from Drosophila melanogaster	2.2e-41
BLAST match view associations BLAST with psmc4 psmc4 psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene_product from Danio rerio	2.8e-41
BLAST match view associations BLAST with psmC4 psmC4 psmC4 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	5.9e-41
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Bos taurus	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Canis lupus familiaris	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Sus scrofa	2.6e-40
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	protein from Mus musculus	2.6e-40
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	gene from Rattus norvegicus	2.6e-40
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 Proteasome (Prosome, macropain) 26S subunit, ATPase 3	protein from Rattus norvegicus	2.6e-40
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26s proteasome aaa-ATPase subunit Rpt3, putative	gene from Plasmodium falciparum	3.3e-40
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26S proteasome AAA-ATPase subunit RPT3, putative	protein from Plasmodium falciparum 3D7	3.3e-40
BLAST match view associations BLAST with RPT3 RPT3 RPT3 AT5G58290	protein from Arabidopsis thaliana	3.3e-40
BLAST match view associations BLAST with psmc3 psmc3 psmc3 proteasome (prosome, macropain) 26S subunit, ATPase, 3	gene_product from Danio rerio	3.3e-40
BLAST match view associations BLAST with psmC3 psmC3 psmC3 26S proteasome ATPase 3 subunit	gene from Dictyostelium discoideum	1.1e-39
BLAST match view associations BLAST with psmc3-b psmc3-b psmc3-b 26S protease regulatory subunit 6A-B	protein from Xenopus laevis	1.1e-39
BLAST match view associations BLAST with LOC100687152 LOC100687152 LOC100687152 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-39
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5	gene from Caenorhabditis elegans	1.8e-39
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5 Protein RPT-5	protein from Caenorhabditis elegans	1.8e-39
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	gene from Plasmodium falciparum	2.9e-39
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	2.9e-39
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	protein from Plasmodium falciparum 3D7	2.9e-39
BLAST match view associations BLAST with RPT5 RPT5 RPT5 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	3.7e-39
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	3.7e-39
BLAST match view associations BLAST with RPT5A RPT5A RPT5A regulatory particle triple-A ATPase 5A	protein from Arabidopsis thaliana	6.1e-39
BLAST match view associations BLAST with Rpt6 Rpt6 Rpt6 Regulatory particle triple-A ATPase 6	protein from Drosophila melanogaster	7.8e-39
BLAST match view associations BLAST with Rpt5 Rpt5 Rpt5 Regulatory particle triple-A ATPase 5	protein from Drosophila melanogaster	9.9e-39
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	1.6e-38
BLAST match view associations BLAST with RPT5B RPT5B RPT5B 26S proteasome AAA-ATPase subunit RPT5B	protein from Arabidopsis thaliana	2.6e-38
BLAST match view associations BLAST with PR26 PR26 PR26	gene_product from Candida albicans	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	1.5e-37
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	1.5e-37
BLAST match view associations BLAST with PR26 PR26 PR26 Likely 26S proteasome regulatory particle ATPase Rpt3p	protein from Candida albicans SC5314	1.5e-37
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Uncharacterized protein	protein from Xenopus laevis	1.5e-37
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Uncharacterized protein	protein from Xenopus (Silurana) tropicalis	1.5e-37
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	1.5e-37
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	1.5e-37
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	1.5e-37
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	1.5e-37
BLAST match view associations BLAST with RPT6 RPT6 RPT6 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.9e-37
BLAST match view associations BLAST with RPT3 RPT3 RPT3 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	8.0e-37
BLAST match view associations BLAST with psmC5 psmC5 psmC5 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	1.0e-36
BLAST match view associations BLAST with psmc5 psmc5 psmc5 26S protease regulatory subunit 8	protein from Xenopus laevis	1.3e-36
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	1.3e-36
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	1.3e-36
BLAST match view associations BLAST with RPT5 RPT5 RPT5	gene_product from Candida albicans	2.1e-36
BLAST match view associations BLAST with psmC2 psmC2 psmC2 26S proteasome ATPase 2 subunit	gene from Dictyostelium discoideum	4.4e-36
BLAST match view associations BLAST with psmc3-a psmc3-a psmc3-a 26S protease regulatory subunit 6A-A	protein from Xenopus laevis	5.7e-36
BLAST match view associations BLAST with RPT1A RPT1A RPT1A regulatory particle triple-A 1A	protein from Arabidopsis thaliana	5.7e-36
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	9.2e-36
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	1.2e-35
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	1.2e-35
BLAST match view associations BLAST with PF13_0033 PF13_0033 PF13_0033 26S proteasome regulatory subunit, putative	gene from Plasmodium falciparum	3.1e-35
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy522
        (131 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0015282 - symbol:Rpt2 "Regulatory particle triple-...   649  1.2e-63   1
UNIPROTKB|F1NSP7 - symbol:PSMC1 "26S protease regulatory ...   636  3.0e-62   1
UNIPROTKB|F1NTZ4 - symbol:PSMC1 "26S protease regulatory ...   636  3.0e-62   1
ZFIN|ZDB-GENE-040625-69 - symbol:psmc1b "proteasome (pros...   634  4.8e-62   1
UNIPROTKB|A4FUZ3 - symbol:PSMC1 "Proteasome (Prosome, mac...   633  6.2e-62   1
UNIPROTKB|F1PQ40 - symbol:PSMC1 "Uncharacterized protein"...   633  6.2e-62   1
UNIPROTKB|B4DR63 - symbol:PSMC1 "cDNA FLJ58247, highly si...   633  6.2e-62   1
UNIPROTKB|P62191 - symbol:PSMC1 "26S protease regulatory ...   633  6.2e-62   1
UNIPROTKB|F2Z5J1 - symbol:PSMC1 "Uncharacterized protein"...   633  6.2e-62   1
MGI|MGI:106054 - symbol:Psmc1 "protease (prosome, macropa...   633  6.2e-62   1
RGD|621097 - symbol:Psmc1 "proteasome (prosome, macropain...   633  6.2e-62   1
UNIPROTKB|Q90732 - symbol:PSMC1 "26S protease regulatory ...   632  7.9e-62   1
ZFIN|ZDB-GENE-030131-8730 - symbol:psmc1a "proteasome (pr...   630  1.3e-61   1
WB|WBGene00004502 - symbol:rpt-2 species:6239 "Caenorhabd...   609  2.2e-59   1
TAIR|locus:2061639 - symbol:RPT2b "regulatory particle AA...   588  3.6e-57   1
DICTYBASE|DDB_G0270784 - symbol:psmC1 "TAT binding protei...   587  4.6e-57   1
TAIR|locus:2119926 - symbol:RPT2a "regulatory particle AA...   580  2.5e-56   1
GENEDB_PFALCIPARUM|PF10_0081 - symbol:PF10_0081 "26S prot...   573  1.4e-55   1
UNIPROTKB|Q8IJW0 - symbol:PF10_0081 "26S proteasome regul...   573  1.4e-55   1
ASPGD|ASPL0000049719 - symbol:AN2213 species:162425 "Emer...   546  1.0e-52   1
CGD|CAL0005257 - symbol:RPT2 species:5476 "Candida albica...   541  3.5e-52   1
SGD|S000002165 - symbol:RPT2 "ATPase of the 19S regulator...   541  3.5e-52   1
UNIPROTKB|J9NWB0 - symbol:J9NWB0 "Uncharacterized protein...   536  1.2e-51   1
POMBASE|SPBC4.07c - symbol:rpt2 "19S proteasome regulator...   519  7.4e-50   1
WB|WBGene00015688 - symbol:C10G11.8 species:6239 "Caenorh...   484  3.8e-46   1
FB|FBgn0028686 - symbol:Rpt3 "Regulatory particle triple-...   457  2.8e-43   1
UNIPROTKB|F1MG70 - symbol:PSMC4 "26S protease regulatory ...   447  3.2e-42   1
UNIPROTKB|Q3T030 - symbol:PSMC4 "26S protease regulatory ...   447  3.2e-42   1
UNIPROTKB|E2RH48 - symbol:PSMC4 "Uncharacterized protein"...   447  3.2e-42   1
UNIPROTKB|P43686 - symbol:PSMC4 "26S protease regulatory ...   447  3.2e-42   1
UNIPROTKB|Q4R7L3 - symbol:PSMC4 "26S protease regulatory ...   447  3.2e-42   1
MGI|MGI:1346093 - symbol:Psmc4 "proteasome (prosome, macr...   447  3.2e-42   1
RGD|621102 - symbol:Psmc4 "proteasome (prosome, macropain...   447  3.2e-42   1
WB|WBGene00004503 - symbol:rpt-3 species:6239 "Caenorhabd...   441  1.4e-41   1
FB|FBgn0037742 - symbol:Rpt3R "Regulatory particle triple...   439  2.2e-41   1
ZFIN|ZDB-GENE-030131-5083 - symbol:psmc4 "proteasome (pro...   438  2.8e-41   1
DICTYBASE|DDB_G0289003 - symbol:psmC4 "HIV TAT binding-pr...   435  5.9e-41   1
UNIPROTKB|F1NDQ1 - symbol:PSMC3 "Uncharacterized protein"...   429  2.6e-40   1
UNIPROTKB|F1P3L9 - symbol:PSMC3 "Uncharacterized protein"...   429  2.6e-40   1
UNIPROTKB|F1MWE0 - symbol:PSMC3 "Uncharacterized protein"...   429  2.6e-40   1
UNIPROTKB|F1PBK7 - symbol:PSMC3 "Uncharacterized protein"...   429  2.6e-40   1
UNIPROTKB|E9PM69 - symbol:PSMC3 "26S protease regulatory ...   429  2.6e-40   1
UNIPROTKB|P17980 - symbol:PSMC3 "26S protease regulatory ...   429  2.6e-40   1
UNIPROTKB|F1SID4 - symbol:PSMC3 "Uncharacterized protein"...   429  2.6e-40   1
MGI|MGI:1098754 - symbol:Psmc3 "proteasome (prosome, macr...   429  2.6e-40   1
RGD|61905 - symbol:Psmc3 "proteasome (prosome, macropain)...   429  2.6e-40   1
UNIPROTKB|Q6P6U2 - symbol:Psmc3 "26S protease regulatory ...   429  2.6e-40   1
GENEDB_PFALCIPARUM|PFD0665c - symbol:PFD0665c "26s protea...   428  3.3e-40   1
UNIPROTKB|Q8I1V1 - symbol:PFD0665c "26S proteasome AAA-AT...   428  3.3e-40   1
TAIR|locus:2161258 - symbol:RPT3 "regulatory particle tri...   428  3.3e-40   1
ZFIN|ZDB-GENE-030131-666 - symbol:psmc3 "proteasome (pros...   428  3.3e-40   1
DICTYBASE|DDB_G0284415 - symbol:psmC3 "26S proteasome ATP...   423  1.1e-39   1
UNIPROTKB|O42586 - symbol:psmc3-b "26S protease regulator...   423  1.1e-39   1
UNIPROTKB|J9NWA6 - symbol:LOC100687152 "Uncharacterized p...   422  1.4e-39   1
WB|WBGene00004505 - symbol:rpt-5 species:6239 "Caenorhabd...   421  1.8e-39   1
UNIPROTKB|O76371 - symbol:rpt-5 "Protein RPT-5" species:6...   421  1.8e-39   1
ASPGD|ASPL0000010049 - symbol:AN4236 species:162425 "Emer...   420  2.3e-39   1
GENEDB_PFALCIPARUM|PF11_0314 - symbol:PF11_0314 "26S prot...   419  2.9e-39   1
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl...   419  2.9e-39   1
UNIPROTKB|Q8II60 - symbol:PF11_0314 "26S protease subunit...   419  2.9e-39   1
SGD|S000005643 - symbol:RPT5 "ATPase of the 19S regulator...   418  3.7e-39   1
WB|WBGene00004506 - symbol:rpt-6 species:6239 "Caenorhabd...   418  3.7e-39   1
TAIR|locus:2079742 - symbol:RPT5A "regulatory particle tr...   416  6.1e-39   1
FB|FBgn0020369 - symbol:Rpt6 "Regulatory particle triple-...   415  7.8e-39   1
FB|FBgn0028684 - symbol:Rpt5 "Regulatory particle triple-...   414  9.9e-39   1
POMBASE|SPAC3A11.12c - symbol:rpt5 "19S proteasome regula...   414  9.9e-39   1
CGD|CAL0006022 - symbol:RPT6 species:5476 "Candida albica...   412  1.6e-38   1
TAIR|locus:2036099 - symbol:RPT5B "26S proteasome AAA-ATP...   410  2.6e-38   1
UNIPROTKB|F1LZ09 - symbol:F1LZ09 "Uncharacterized protein...   409  3.4e-38   1
CGD|CAL0001552 - symbol:PR26 species:5476 "Candida albica...   403  1.5e-37   1
UNIPROTKB|F1NU79 - symbol:PSMC5 "Uncharacterized protein"...   403  1.5e-37   1
UNIPROTKB|P62194 - symbol:PSMC5 "26S protease regulatory ...   403  1.5e-37   1
UNIPROTKB|P62195 - symbol:PSMC5 "26S protease regulatory ...   403  1.5e-37   1
UNIPROTKB|P62197 - symbol:PSMC5 "26S protease regulatory ...   403  1.5e-37   1
UNIPROTKB|Q4RG45 - symbol:GSTENG00035021001 "Chromosome 2...   403  1.5e-37   1
UNIPROTKB|Q5A0L8 - symbol:PR26 "Likely 26S proteasome reg...   403  1.5e-37   1
UNIPROTKB|Q6AZU7 - symbol:Q6AZU7 "Putative uncharacterize...   403  1.5e-37   1
UNIPROTKB|Q6P380 - symbol:psmc5 "Putative uncharacterized...   403  1.5e-37   1
MGI|MGI:105047 - symbol:Psmc5 "protease (prosome, macropa...   403  1.5e-37   1
RGD|708376 - symbol:Psmc5 "proteasome (prosome, macropain...   403  1.5e-37   1
WB|WBGene00018991 - symbol:F56F11.4 species:6239 "Caenorh...   403  1.5e-37   1
ZFIN|ZDB-GENE-030131-6547 - symbol:psmc5 "proteasome (pro...   403  1.5e-37   1
SGD|S000003016 - symbol:RPT6 "ATPase of the 19S regulator...   402  1.9e-37   1
ASPGD|ASPL0000036562 - symbol:AN2904 species:162425 "Emer...   397  6.3e-37   1
SGD|S000002802 - symbol:RPT3 "ATPase of the 19S regulator...   396  8.0e-37   1
DICTYBASE|DDB_G0292382 - symbol:psmC5 "HIV TAT binding-pr...   395  1.0e-36   1
UNIPROTKB|P46470 - symbol:psmc5 "26S protease regulatory ...   394  1.3e-36   1
POMBASE|SPBC23G7.12c - symbol:rpt6 "19S proteasome regula...   394  1.3e-36   1
TAIR|locus:2147670 - symbol:RPT6A "regulatory particle tr...   394  1.3e-36   1
TAIR|locus:2147685 - symbol:AT5G20000 species:3702 "Arabi...   394  1.3e-36   1
CGD|CAL0002261 - symbol:RPT5 species:5476 "Candida albica...   392  2.1e-36   1
ASPGD|ASPL0000064945 - symbol:AN6988 species:162425 "Emer...   391  2.7e-36   1
DICTYBASE|DDB_G0276917 - symbol:psmC2 "26S proteasome ATP...   389  4.4e-36   1
UNIPROTKB|O42587 - symbol:psmc3-a "26S protease regulator...   388  5.7e-36   1
TAIR|locus:2024822 - symbol:RPT1A "regulatory particle tr...   388  5.7e-36   1
FB|FBgn0039788 - symbol:Rpt6R "Regulatory particle triple...   386  9.2e-36   1
POMBASE|SPCC576.10c - symbol:rpt3 "19S proteasome regulat...   386  9.2e-36   1
WB|WBGene00004504 - symbol:rpt-4 species:6239 "Caenorhabd...   385  1.2e-35   1
UNIPROTKB|O17071 - symbol:rpt-4 "Probable 26S protease re...   385  1.2e-35   1
GENEDB_PFALCIPARUM|PF13_0033 - symbol:PF13_0033 "26S prot...   381  3.1e-35   1

WARNING:  Descriptions of 574 database sequences were not reported due to the
          limiting value of parameter V = 100.


>FB|FBgn0015282 [details] [associations]
            symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
            evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
            [GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
            spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
            elongation" evidence=IMP] [GO:0008283 "cell proliferation"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
            eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
            OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
            RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
            SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
            STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
            GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
            InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
            BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
            Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
        Length = 439

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 129/131 (98%), Positives = 129/131 (98%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   269 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 328

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF IHTSRMTLAEDVNL ELIMAKDD
Sbjct:   329 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDD 388

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   389 LSGADIKAICT 399


>UNIPROTKB|F1NSP7 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
            EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
            Uniprot:F1NSP7
        Length = 439

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 125/131 (95%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   269 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 328

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L ELIMAKDD
Sbjct:   329 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDD 388

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   389 LSGADIKAICT 399


>UNIPROTKB|F1NTZ4 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
            IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
            Uniprot:F1NTZ4
        Length = 438

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 125/131 (95%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   268 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 327

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L ELIMAKDD
Sbjct:   328 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDD 387

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   388 LSGADIKAICT 398


>ZFIN|ZDB-GENE-040625-69 [details] [associations]
            symbol:psmc1b "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
            IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
            Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
            InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
        Length = 440

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 124/131 (94%), Positives = 129/131 (98%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF IHTSRMT+AEDV+L +LI+AKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVAEDVSLDDLILAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>UNIPROTKB|A4FUZ3 [details] [associations]
            symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
            ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
            EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
            SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
            InParanoid:A4FUZ3 Uniprot:A4FUZ3
        Length = 440

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L +LIMAKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>UNIPROTKB|F1PQ40 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
            RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
            Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
            Uniprot:F1PQ40
        Length = 440

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L +LIMAKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>UNIPROTKB|B4DR63 [details] [associations]
            symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
            regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
            EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
            IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
            Uniprot:B4DR63
        Length = 367

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   197 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 256

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L +LIMAKDD
Sbjct:   257 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD 316

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   317 LSGADIKAICT 327


>UNIPROTKB|P62191 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
            complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
            evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
            evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
            evidence=TAS] [GO:0000209 "protein polyubiquitination"
            evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
            evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
            [GO:0002474 "antigen processing and presentation of peptide antigen
            via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
            presentation of exogenous peptide antigen via MHC class I,
            TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
            Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
            Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
            GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
            EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
            PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
            ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
            MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
            PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
            Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
            GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
            HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
            InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
            ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
            Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
        Length = 440

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L +LIMAKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>UNIPROTKB|F2Z5J1 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
            RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
            SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
            KEGG:ssc:100155274 Uniprot:F2Z5J1
        Length = 440

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L +LIMAKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>MGI|MGI:106054 [details] [associations]
            symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
            ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
            "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
            OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
            RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
            SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
            REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
            Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
            InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
            GermOnline:ENSMUSG00000021178 Uniprot:P62192
        Length = 440

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L +LIMAKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>RGD|621097 [details] [associations]
            symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
            evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
            EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
            ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
            PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
            KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
            Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
        Length = 440

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/131 (94%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L +LIMAKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>UNIPROTKB|Q90732 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
            IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
            ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
            KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
            NextBio:20815872 Uniprot:Q90732
        Length = 440

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 124/131 (94%), Positives = 127/131 (96%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEH PSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTK+RIF IHTSRMTLA+DV L ELIMAKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
            symbol:psmc1a "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
            IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
            ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
            KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
            ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
        Length = 440

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 123/131 (93%), Positives = 128/131 (97%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEEHAPSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF IHTSRMT+A+DV L +LI+AKDD
Sbjct:   330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVADDVTLDDLILAKDD 389

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   390 LSGADIKAICT 400


>WB|WBGene00004502 [details] [associations]
            symbol:rpt-2 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
            binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
            RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
            IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
            PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
            GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
            WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
            NextBio:903424 Uniprot:O16368
        Length = 443

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 119/131 (90%), Positives = 127/131 (96%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVAEE+APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKV+M
Sbjct:   273 LFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLM 332

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIE+LDPALIRPGRIDRKIEFPLPDEKTKRRIF IHTSRMTL ++VNL+E I AKD+
Sbjct:   333 ATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDE 392

Query:   121 LSGADIKAICT 131
             LSGADIKA+CT
Sbjct:   393 LSGADIKAMCT 403


>TAIR|locus:2061639 [details] [associations]
            symbol:RPT2b "regulatory particle AAA-ATPase 2b"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
            "female gamete generation" evidence=IGI] [GO:0010078 "maintenance
            of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
            generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051510 "regulation of unidimensional cell
            growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
            GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
            ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
            EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
            UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
            STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
            GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
            InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
        Length = 443

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 113/131 (86%), Positives = 125/131 (95%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVA++ +PSIVFIDEIDAVGTKRYD+NSGGEREIQRTMLELLNQLDGFDSRGDVKVI+
Sbjct:   273 LFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 332

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT+RRIF IHTS+MTLAEDVNL+E +M KD+
Sbjct:   333 ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDE 392

Query:   121 LSGADIKAICT 131
              SGADIKAICT
Sbjct:   393 FSGADIKAICT 403


>DICTYBASE|DDB_G0270784 [details] [associations]
            symbol:psmC1 "TAT binding protein alpha"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
            GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
            STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
            GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
            Uniprot:Q55BV5
        Length = 439

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 115/131 (87%), Positives = 124/131 (94%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVA+E APSIVFIDEIDAVGTKRYDS SGGEREIQRTMLELLNQLDGFD+R DVKVIM
Sbjct:   269 LFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIM 328

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIETLDPALIRPGRIDRKIEFPLPD KTKR+IF IHT++M L+EDVNL+E +M+KDD
Sbjct:   329 ATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDD 388

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   389 LSGADIKAICT 399


>TAIR|locus:2119926 [details] [associations]
            symbol:RPT2a "regulatory particle AAA-ATPase 2A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0009933 "meristem structural organization" evidence=IMP]
            [GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0010015 "root
            morphogenesis" evidence=IMP] [GO:0010078 "maintenance of root
            meristem identity" evidence=IMP] [GO:0010311 "lateral root
            formation" evidence=IMP] [GO:0035266 "meristem growth"
            evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
            [GO:0048827 "phyllome development" evidence=IMP] [GO:0048829 "root
            cap development" evidence=IMP] [GO:0046686 "response to cadmium
            ion" evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0009408 "response to heat" evidence=IMP] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=RCA;IMP] [GO:0043248 "proteasome assembly"
            evidence=RCA;IMP] [GO:0048364 "root development" evidence=IMP]
            [GO:0051788 "response to misfolded protein" evidence=RCA;IMP]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0007292 "female gamete generation"
            evidence=IGI] [GO:0048232 "male gamete generation" evidence=IGI]
            [GO:0090351 "seedling development" evidence=IMP] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009651
            "response to salt stress" evidence=RCA] [GO:0009853
            "photorespiration" evidence=RCA] [GO:0042023 "DNA
            endoreduplication" evidence=RCA] [GO:0051510 "regulation of
            unidimensional cell growth" evidence=RCA] [GO:0060968 "regulation
            of gene silencing" evidence=IMP] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0046686 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0043161 GO:GO:0016020 EMBL:AL078470
            EMBL:AL161574 GO:GO:0009408 GO:GO:0010311 GO:GO:0048829
            GO:GO:0000502 GO:GO:0043248 GO:GO:0017111 GO:GO:0009965
            GO:GO:0009933 EMBL:AL078469 GO:GO:0007292 GO:GO:0060968
            GO:GO:0010078 HSSP:P43773 GO:GO:0051788 GO:GO:0090351 GO:GO:0048232
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123391 EMBL:AB161192 EMBL:AY034975 IPI:IPI00538666
            PIR:T08959 RefSeq:NP_194633.1 UniGene:At.24596
            ProteinModelPortal:Q9SZD4 SMR:Q9SZD4 IntAct:Q9SZD4 STRING:Q9SZD4
            PaxDb:Q9SZD4 PRIDE:Q9SZD4 EnsemblPlants:AT4G29040.1 GeneID:829025
            KEGG:ath:AT4G29040 GeneFarm:1494 TAIR:At4g29040 InParanoid:Q9SZD4
            KO:K03062 OMA:SAIVMEA PhylomeDB:Q9SZD4 ProtClustDB:CLSN2683303
            GO:GO:0035266 Uniprot:Q9SZD4
        Length = 443

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 111/131 (84%), Positives = 125/131 (95%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFRVA++ +PSIVFIDEIDAVGTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDVKVI+
Sbjct:   273 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 332

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT+RRIF IHTS+MTL+EDVNL+E +M KD+
Sbjct:   333 ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDE 392

Query:   121 LSGADIKAICT 131
              SGADIKAICT
Sbjct:   393 FSGADIKAICT 403


>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory
            subunit 4, putative" species:5833 "Plasmodium falciparum"
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006508
            "proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 109/131 (83%), Positives = 124/131 (94%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F+VAEEHAPSIVFIDEIDAVGTKRY++ SGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   278 MFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 337

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI++LDPALIRPGRIDRKI+ P PD KTKRRIF IHTS+MT++ DV+L+E +M+KD+
Sbjct:   338 ATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 397

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   398 LSGADIKAICT 408


>UNIPROTKB|Q8IJW0 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory subunit 4,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 109/131 (83%), Positives = 124/131 (94%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F+VAEEHAPSIVFIDEIDAVGTKRY++ SGGEREIQRTMLELLNQLDGFDSRGDVKVIM
Sbjct:   278 MFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 337

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI++LDPALIRPGRIDRKI+ P PD KTKRRIF IHTS+MT++ DV+L+E +M+KD+
Sbjct:   338 ATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 397

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   398 LSGADIKAICT 408


>ASPGD|ASPL0000049719 [details] [associations]
            symbol:AN2213 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0043171 "peptide catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001307
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER
            OrthoDB:EOG4FN7S6 EMBL:AACD01000035 RefSeq:XP_659817.1
            ProteinModelPortal:Q5BB67 STRING:Q5BB67
            EnsemblFungi:CADANIAT00008897 GeneID:2875757 KEGG:ani:AN2213.2
            Uniprot:Q5BB67
        Length = 460

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 105/131 (80%), Positives = 118/131 (90%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F+VA EHAPSIVFIDEIDA+GTKRYDS SGGEREIQRTMLELLNQLDGFD RGDVKVIM
Sbjct:   289 IFQVAAEHAPSIVFIDEIDAIGTKRYDSTSGGEREIQRTMLELLNQLDGFDDRGDVKVIM 348

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATN+IETLDPALIRPGRIDRKI F  PD+ TK++IF +HTS+M+L +DV+L E I  KDD
Sbjct:   349 ATNKIETLDPALIRPGRIDRKILFENPDQNTKKKIFTLHTSKMSLGDDVDLDEFINQKDD 408

Query:   121 LSGADIKAICT 131
             LSGADI+AICT
Sbjct:   409 LSGADIRAICT 419


>CGD|CAL0005257 [details] [associations]
            symbol:RPT2 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045732 "positive regulation
            of protein catabolic process" evidence=IEA] [GO:0043171 "peptide
            catabolic process" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005257 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000051 EMBL:AACQ01000050
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03062 RefSeq:XP_717718.1
            RefSeq:XP_717812.1 ProteinModelPortal:Q5A7M6 STRING:Q5A7M6
            GeneID:3640525 GeneID:3640683 KEGG:cal:CaO19.12895
            KEGG:cal:CaO19.5440 Uniprot:Q5A7M6
        Length = 465

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 102/131 (77%), Positives = 118/131 (90%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F++A +HAPSIVFIDEIDA+GTKRY+S SGGEREIQRTMLELLNQLDGFD RGD+KVIM
Sbjct:   271 IFQIAADHAPSIVFIDEIDAIGTKRYESTSGGEREIQRTMLELLNQLDGFDDRGDIKVIM 330

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATN+IE+LDPALIRPGRIDRKI F  PD  TK++I  IHTS+M+LA+DVNL E++  KDD
Sbjct:   331 ATNKIESLDPALIRPGRIDRKILFENPDANTKKKILTIHTSKMSLADDVNLDEIVTGKDD 390

Query:   121 LSGADIKAICT 131
             LSGADIKAICT
Sbjct:   391 LSGADIKAICT 401


>SGD|S000002165 [details] [associations]
            symbol:RPT2 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
            evidence=IDA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IMP] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=IDA] [GO:0045732 "positive regulation of
            protein catabolic process" evidence=IDA] [GO:0043171 "peptide
            catabolic process" evidence=IMP] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002165 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0016887 GO:GO:0043171 GO:GO:0006511
            GO:GO:0045732 EMBL:Z48432 GO:GO:0070682 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T
            PDBsum:4B4T KO:K03062 OMA:FIRNQER GeneTree:ENSGT00550000074818
            OrthoDB:EOG4FN7S6 EMBL:X81070 EMBL:L17040 EMBL:Z74055 PIR:S46613
            RefSeq:NP_010277.1 ProteinModelPortal:P40327 SMR:P40327
            DIP:DIP-6282N IntAct:P40327 MINT:MINT-632695 STRING:P40327
            PaxDb:P40327 PeptideAtlas:P40327 PRIDE:P40327 EnsemblFungi:YDL007W
            GeneID:851557 KEGG:sce:YDL007W NextBio:968983 Genevestigator:P40327
            GermOnline:YDL007W Uniprot:P40327
        Length = 437

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 105/131 (80%), Positives = 118/131 (90%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F+VA E+APSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFD RGDVKVIM
Sbjct:   267 IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIM 326

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATN+IETLDPALIRPGRIDRKI F  PD  TK++I  IHTS+M L+EDVNL+ L+  KDD
Sbjct:   327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDD 386

Query:   121 LSGADIKAICT 131
             LSGADI+A+CT
Sbjct:   387 LSGADIQAMCT 397


>UNIPROTKB|J9NWB0 [details] [associations]
            symbol:J9NWB0 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074818 EMBL:AAEX03014432
            Ensembl:ENSCAFT00000039483 OMA:AGSELIQ Uniprot:J9NWB0
        Length = 436

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 108/130 (83%), Positives = 117/130 (90%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             FRVAEEHAPSIVFIDEIDA+GT+RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA
Sbjct:   269 FRVAEEHAPSIVFIDEIDAIGTRRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 328

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNRI+TLDPAL     +  ++  PLPDEKTK+ IF IHTSRMTLA+DV L +LIMAKDDL
Sbjct:   329 TNRIKTLDPALSHQAALTGRLS-PLPDEKTKKHIFQIHTSRMTLADDVTL-DLIMAKDDL 386

Query:   122 SGADIKAICT 131
             SGADIKAICT
Sbjct:   387 SGADIKAICT 396


>POMBASE|SPBC4.07c [details] [associations]
            symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
            species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IC] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
            GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
            RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
            STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
            KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
            Uniprot:P36612
        Length = 448

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 104/130 (80%), Positives = 113/130 (86%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD-SRGDVKVI 59
             LF  AEEH+PSIVFIDEIDA+GTKRYD+ SG EREIQRTMLELLNQLDGFD S+ D+KVI
Sbjct:   276 LFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVI 335

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             MATNRI  LDPALIRPGRIDRKI F  PDE TKR+IF IHTS+M L EDVNL+ELI  KD
Sbjct:   336 MATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKD 395

Query:   120 DLSGADIKAI 129
             DLSGA+IKAI
Sbjct:   396 DLSGAEIKAI 405


>WB|WBGene00015688 [details] [associations]
            symbol:C10G11.8 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 HSSP:Q9LCZ4 EMBL:FO080499 PIR:D87802
            RefSeq:NP_491811.1 ProteinModelPortal:P91025 SMR:P91025
            STRING:P91025 PaxDb:P91025 EnsemblMetazoa:C10G11.8 GeneID:172324
            KEGG:cel:CELE_C10G11.8 UCSC:C10G11.8 CTD:172324 WormBase:C10G11.8
            InParanoid:P91025 OMA:RGIENAN NextBio:875027 Uniprot:P91025
        Length = 438

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 90/131 (68%), Positives = 116/131 (88%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F++A+E APSIVFIDEIDAVGTKR+D++S GE+E+QRT+LELLNQLDGF+SRGDVK+IM
Sbjct:   268 IFQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRGDVKIIM 327

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI++LDPALIRPGRIDRKIE P PDEKT+++IF IHTS MT+ + V  + ++  +  
Sbjct:   328 ATNRIDSLDPALIRPGRIDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVLGKEKS 387

Query:   121 LSGADIKAICT 131
             +SGA+IKA+CT
Sbjct:   388 ISGAEIKAVCT 398


>FB|FBgn0028686 [details] [associations]
            symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
            GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
            GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
            GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
            EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
            EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
            EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
            SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
            KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
            InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
            Uniprot:Q9V405
        Length = 413

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 83/130 (63%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   245 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 304

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F+  TS+M L+EDV+L+E +   D 
Sbjct:   305 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDK 364

Query:   121 LSGADIKAIC 130
             +SGADI AIC
Sbjct:   365 ISGADINAIC 374


>UNIPROTKB|F1MG70 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
            IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
            Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
        Length = 417

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   249 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 308

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF+  TS+M L+E+V+L++ +   D 
Sbjct:   309 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDK 368

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   369 ISGADINSIC 378


>UNIPROTKB|Q3T030 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
            RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
            SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
            CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
            ArrayExpress:Q3T030 Uniprot:Q3T030
        Length = 418

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   250 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 309

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF+  TS+M L+E+V+L++ +   D 
Sbjct:   310 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDK 369

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   370 ISGADINSIC 379


>UNIPROTKB|E2RH48 [details] [associations]
            symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
            RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
            PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
            KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
        Length = 418

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   250 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 309

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF+  TS+M L+E+V+L++ +   D 
Sbjct:   310 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDK 369

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   370 ISGADINSIC 379


>UNIPROTKB|P43686 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
            "ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006521 "regulation of cellular amino acid metabolic process"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
            [GO:0006977 "DNA damage response, signal transduction by p53 class
            mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0006200 "ATP catabolic process" evidence=TAS]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
            GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
            GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
            EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
            EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
            IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
            RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
            ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
            MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
            OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
            Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
            KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
            HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
            neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
            PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
            GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
            CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
            Uniprot:P43686
        Length = 418

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   250 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 309

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF+  TS+M L+E+V+L++ +   D 
Sbjct:   310 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDK 369

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   370 ISGADINSIC 379


>UNIPROTKB|Q4R7L3 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
            accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
            ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
        Length = 418

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   250 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 309

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF+  TS+M L+E+V+L++ +   D 
Sbjct:   310 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDK 369

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   370 ISGADINSIC 379


>MGI|MGI:1346093 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
            EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
            EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
            UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
            SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
            REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
            Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
            InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
            Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
            Uniprot:P54775
        Length = 418

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   250 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 309

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF+  TS+M L+E+V+L++ +   D 
Sbjct:   310 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDK 369

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   370 ISGADINSIC 379


>RGD|621102 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
            "blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
            evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
            accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
            process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
            EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
            UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
            SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
            PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
            KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
            EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
            GermOnline:ENSRNOG00000018994 Uniprot:Q63570
        Length = 418

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   250 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 309

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF+  TS+M L+E+V+L++ +   D 
Sbjct:   310 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDK 369

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   370 ISGADINSIC 379


>WB|WBGene00004503 [details] [associations]
            symbol:rpt-3 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
            EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
            ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
            MINT:MINT-212949 STRING:P46502 PaxDb:P46502
            EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
            KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
            GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
            Uniprot:P46502
        Length = 414

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 80/130 (61%), Positives = 109/130 (83%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E++PSI+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   246 VFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIM 305

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F+   SRM L++DV+L++ +   D 
Sbjct:   306 ATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDK 365

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   366 ISGADINSIC 375


>FB|FBgn0037742 [details] [associations]
            symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
            PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
            GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
            GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
            RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
            EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
            KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
            OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
            Uniprot:Q9VH79
        Length = 405

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 79/130 (60%), Positives = 107/130 (82%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LFR+A++++PSI+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   ++KVIM
Sbjct:   237 LFRLAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIM 296

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIE PLPD + KR +F   TS+M + EDV+L+++I   D 
Sbjct:   297 ATNRADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIARPDK 356

Query:   121 LSGADIKAIC 130
             +S ADI AIC
Sbjct:   357 ISNADINAIC 366


>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
            symbol:psmc4 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
            Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
            UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
            PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
            Uniprot:Q7SXX0
        Length = 418

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 79/130 (60%), Positives = 109/130 (83%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   250 VFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIM 309

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+ PGR+DRKIEFPLPD + KR +F+  TS+M L+E+V+L++ +   D 
Sbjct:   310 ATNRADTLDPALLCPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEEVDLEDYVARPDK 369

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   370 ISGADINSIC 379


>DICTYBASE|DDB_G0289003 [details] [associations]
            symbol:psmC4 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0006972 "hyperosmotic response"
            evidence=IEP] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS] [GO:0004175 "endopeptidase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0289003 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GO:GO:0006508 GenomeReviews:CM000154_GR GO:GO:0006972
            GO:GO:0004175 EMBL:AAFI02000129 GO:GO:0030163 GO:GO:0017111
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03063 OMA:DQTTNVK EMBL:L16578
            PIR:JN0611 RefSeq:XP_636422.1 ProteinModelPortal:P34123 SMR:P34123
            STRING:P34123 PRIDE:P34123 EnsemblProtists:DDB0191435
            GeneID:8626913 KEGG:ddi:DDB_G0289003 ProtClustDB:PTZ00454
            GO:GO:0005838 Uniprot:P34123
        Length = 403

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 78/130 (60%), Positives = 110/130 (84%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E++P+I+FIDEIDA+ TKR+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIM
Sbjct:   235 VFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIM 294

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF + TS+M L+++V+L++ +   D 
Sbjct:   295 ATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDK 354

Query:   121 LSGADIKAIC 130
             LSGA+I++IC
Sbjct:   355 LSGAEIQSIC 364


>UNIPROTKB|F1NDQ1 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
            Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
        Length = 385

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   218 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 277

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   278 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 337

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   338 NGAQCKAVC 346


>UNIPROTKB|F1P3L9 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
            Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
        Length = 389

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   222 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 281

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   282 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 341

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   342 NGAQCKAVC 350


>UNIPROTKB|F1MWE0 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:DAAA02041602 IPI:IPI00701790
            UniGene:Bt.49089 Ensembl:ENSBTAT00000028983 NextBio:20868523
            Uniprot:F1MWE0
        Length = 456

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   289 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 348

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   349 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 408

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   409 NGAQCKAVC 417


>UNIPROTKB|F1PBK7 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
            Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
        Length = 439

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   272 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 331

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   332 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 391

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   392 NGAQCKAVC 400


>UNIPROTKB|E9PM69 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
            ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
            PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
            Bgee:E9PM69 Uniprot:E9PM69
        Length = 397

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   230 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 289

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   290 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 349

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   350 NGAQCKAVC 358


>UNIPROTKB|P17980 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
            "blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=ISS] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=TAS] [GO:0003714 "transcription corepressor
            activity" evidence=TAS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
            Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
            Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
            GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
            GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
            GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
            EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
            EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
            IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
            ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
            MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
            REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
            PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
            KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
            HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
            PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
            PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
            PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
            Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
        Length = 439

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   272 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 331

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   332 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 391

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   392 NGAQCKAVC 400


>UNIPROTKB|F1SID4 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
            Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
        Length = 446

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   279 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 338

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   339 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 398

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   399 NGAQCKAVC 407


>MGI|MGI:1098754 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
            ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
            cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
            GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
            CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
            EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
            UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
            IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
            PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
            NextBio:295874 Bgee:O88685 Genevestigator:O88685
            GermOnline:ENSMUSG00000002102 Uniprot:O88685
        Length = 442

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   275 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 334

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   335 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 394

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   395 NGAQCKAVC 403


>RGD|61905 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
           3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
           processing body" evidence=ISS] [GO:0001824 "blastocyst development"
           evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
           [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
           evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
           [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
           [GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
           [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
           "perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
           InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
           Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
           GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
           GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
           KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
           IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
           ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
           PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
           UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
           Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
        Length = 439

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   272 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 331

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   332 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 391

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   392 NGAQCKAVC 400


>UNIPROTKB|Q6P6U2 [details] [associations]
            symbol:Psmc3 "26S protease regulatory subunit 6A"
            species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
            IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
            Genevestigator:Q6P6U2 Uniprot:Q6P6U2
        Length = 442

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 78/129 (60%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   275 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 334

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   335 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 394

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   395 NGAQCKAVC 403


>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
            symbol:PFD0665c "26s proteasome aaa-ATPase
            subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
            RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
            MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
            GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
            Uniprot:Q8I1V1
        Length = 392

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/129 (60%), Positives = 104/129 (80%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E++PSI+FIDE+DA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   223 VFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIM 282

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD K KR IF    S+M ++ DVN++  ++  D 
Sbjct:   283 ATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVVRTDK 342

Query:   121 LSGADIKAI 129
             +S ADI AI
Sbjct:   343 ISAADIAAI 351


>UNIPROTKB|Q8I1V1 [details] [associations]
            symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
            GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
            IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
            EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
            EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
        Length = 392

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/129 (60%), Positives = 104/129 (80%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E++PSI+FIDE+DA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD   +VKVIM
Sbjct:   223 VFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIM 282

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD K KR IF    S+M ++ DVN++  ++  D 
Sbjct:   283 ATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVVRTDK 342

Query:   121 LSGADIKAI 129
             +S ADI AI
Sbjct:   343 ISAADIAAI 351


>TAIR|locus:2161258 [details] [associations]
            symbol:RPT3 "regulatory particle triple-A ATPase 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
            "ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
            stimulus" evidence=RCA] [GO:0009853 "photorespiration"
            evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
            evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
            IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
            ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
            PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
            KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
            KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
            GermOnline:AT5G58290 Uniprot:Q9SEI4
        Length = 408

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 75/130 (57%), Positives = 108/130 (83%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A+E+AP+I+FIDE+DA+ T R+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIM
Sbjct:   240 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F + TS+M L+++V+L++ +   D 
Sbjct:   300 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDK 359

Query:   121 LSGADIKAIC 130
             +S A+I AIC
Sbjct:   360 ISAAEIAAIC 369


>ZFIN|ZDB-GENE-030131-666 [details] [associations]
            symbol:psmc3 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
            Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
            Uniprot:F1QJQ2
        Length = 427

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/129 (60%), Positives = 100/129 (77%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   260 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAA 319

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M +  DVN +EL    DD 
Sbjct:   320 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVCPDVNFEELARCTDDF 379

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   380 NGAQCKAVC 388


>DICTYBASE|DDB_G0284415 [details] [associations]
            symbol:psmC3 "26S proteasome ATPase 3 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0284415 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0030163 GO:GO:0000502
            HSSP:Q01853 GO:GO:0017111 EMBL:AAFI02000064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            RefSeq:XP_638617.1 ProteinModelPortal:Q54PN7 STRING:Q54PN7
            PRIDE:Q54PN7 EnsemblProtists:DDB0232967 GeneID:8624588
            KEGG:ddi:DDB_G0284415 InParanoid:Q54PN7 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 Uniprot:Q54PN7
        Length = 421

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 76/129 (58%), Positives = 102/129 (79%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E  P+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF S  ++KVI A
Sbjct:   254 FALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAA 313

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNRI+ LDPAL+R GR+DRKIEFPLP+E+ +  I  IH+ +M ++ DVN  EL  + +D 
Sbjct:   314 TNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDF 373

Query:   122 SGADIKAIC 130
             +GA +KA+C
Sbjct:   374 NGAQLKAVC 382


>UNIPROTKB|O42586 [details] [associations]
            symbol:psmc3-b "26S protease regulatory subunit 6A-B"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
            Xenbase:XB-GENE-1009853 Uniprot:O42586
        Length = 404

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 77/129 (59%), Positives = 100/129 (77%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+G KR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   237 FSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAA 296

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   297 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 356

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   357 NGAQCKAVC 365


>UNIPROTKB|J9NWA6 [details] [associations]
            symbol:LOC100687152 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
            Uniprot:J9NWA6
        Length = 434

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 77/129 (59%), Positives = 100/129 (77%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   267 FALAKEKAPSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 326

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+D+KIEFP+P+E+ + RI  IH+ +M ++ DVN +EL    DD 
Sbjct:   327 TNRVDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCMDDF 386

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   387 NGAQCKAVC 395


>WB|WBGene00004505 [details] [associations]
            symbol:rpt-5 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:FO080337
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371
            SMR:O76371 IntAct:O76371 MINT:MINT-211164 STRING:O76371
            PaxDb:O76371 EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2
            GeneID:172238 KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238
            WormBase:F56H1.4 InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 77/129 (59%), Positives = 99/129 (76%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E AP+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF    D+KVI A
Sbjct:   263 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAA 322

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNRI+ LDPAL+R GR+DRKIE P P+E  + RI  IH+ +M + +DVN +EL    DD 
Sbjct:   323 TNRIDVLDPALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELARCTDDF 382

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   383 NGAQCKAVC 391


>UNIPROTKB|O76371 [details] [associations]
            symbol:rpt-5 "Protein RPT-5" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            GeneTree:ENSGT00560000077230 EMBL:FO080337 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371 SMR:O76371
            IntAct:O76371 MINT:MINT-211164 STRING:O76371 PaxDb:O76371
            EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2 GeneID:172238
            KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238 WormBase:F56H1.4
            InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 77/129 (59%), Positives = 99/129 (76%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E AP+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF    D+KVI A
Sbjct:   263 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAA 322

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNRI+ LDPAL+R GR+DRKIE P P+E  + RI  IH+ +M + +DVN +EL    DD 
Sbjct:   323 TNRIDVLDPALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELARCTDDF 382

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   383 NGAQCKAVC 391


>ASPGD|ASPL0000010049 [details] [associations]
            symbol:AN4236 species:162425 "Emericella nidulans"
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
            GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
            RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
            EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
            Uniprot:Q5B5E4
        Length = 465

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 77/129 (59%), Positives = 101/129 (78%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DAVGTKR+DS   G+RE+QRTMLELLNQLDGF S   +KV+ A
Sbjct:   297 FALAKEKAPSIIFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAA 356

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFPLP+E+ +  I  IH+ +MT+ + VN  EL  + D+ 
Sbjct:   357 TNRVDVLDPALLRSGRLDRKIEFPLPNEEARANILQIHSRKMTVEDSVNWAELARSTDEF 416

Query:   122 SGADIKAIC 130
              GA +KA+C
Sbjct:   417 GGAQLKAVC 425


>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
            symbol:PF11_0314 "26S protease subunit
            regulatory subunit 6a, putative" species:5833 "Plasmodium
            falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/129 (59%), Positives = 103/129 (79%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E AP+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF +   VKVI A
Sbjct:   272 FNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAA 331

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR +TLDPAL+R GR+DRKIE P P+E+++ RI  IH+ +M + +DVN +EL  + DD 
Sbjct:   332 TNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELARSTDDF 391

Query:   122 SGADIKAIC 130
             +GA +KA+C
Sbjct:   392 NGAQLKAVC 400


>UNIPROTKB|Q58576 [details] [associations]
            symbol:pan "Proteasome-activating nucleotidase"
            species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
            "GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
            "proteasome-activating nucleotidase complex" evidence=IDA]
            [GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
            unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
            GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
            GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
            PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
            ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
            KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
            ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
            TIGRFAMs:TIGR01242 Uniprot:Q58576
        Length = 430

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/131 (58%), Positives = 104/131 (79%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F++A+E APSI+FIDEIDA+  KR D+ +GG+RE+QRT+++LL ++DGFD+RGDVK+I 
Sbjct:   255 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 314

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPA++RPGR DR IE P PDEK +  I  IHT +M LAEDVNL+E+    + 
Sbjct:   315 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEG 374

Query:   121 LSGADIKAICT 131
               GA++KAICT
Sbjct:   375 CVGAELKAICT 385


>UNIPROTKB|Q8II60 [details] [associations]
            symbol:PF11_0314 "26S protease subunit regulatory subunit
            6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/129 (59%), Positives = 103/129 (79%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E AP+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF +   VKVI A
Sbjct:   272 FNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAA 331

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR +TLDPAL+R GR+DRKIE P P+E+++ RI  IH+ +M + +DVN +EL  + DD 
Sbjct:   332 TNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELARSTDDF 391

Query:   122 SGADIKAIC 130
             +GA +KA+C
Sbjct:   392 NGAQLKAVC 400


>SGD|S000005643 [details] [associations]
            symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
            GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
            EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
            RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
            DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
            PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
            GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
            NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
            Uniprot:P33297
        Length = 434

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/128 (59%), Positives = 102/128 (79%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E AP+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF S   VKV+ A
Sbjct:   267 FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA 326

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ LDPAL+R GR+DRKIEFPLP E ++ +I  IH+ +MT  +D+N QEL  + D+ 
Sbjct:   327 TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386

Query:   122 SGADIKAI 129
             +GA +KA+
Sbjct:   387 NGAQLKAV 394


>WB|WBGene00004506 [details] [associations]
            symbol:rpt-6 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
            GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
            GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
            DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
            PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
            GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
            WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
            Uniprot:Q9XTT9
        Length = 416

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/131 (58%), Positives = 103/131 (78%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R + +SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   244 LFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 303

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LDPAL+RPGRIDRKIEFP PDEK +  I  IH+ +M L   +N+ ++      
Sbjct:   304 ATNRIDILDPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNLMRGINMAKIAEQIPG 363

Query:   121 LSGADIKAICT 131
              SGA++K++CT
Sbjct:   364 ASGAEVKSVCT 374


>TAIR|locus:2079742 [details] [associations]
            symbol:RPT5A "regulatory particle triple-A ATPase 5A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
            sac development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
            differentiation" evidence=RCA] [GO:0009630 "gravitropism"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
            GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
            IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
            ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
            PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
            KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
            PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
        Length = 424

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 78/129 (60%), Positives = 100/129 (77%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F++A+E AP I+FIDEIDA+GTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI A
Sbjct:   257 FQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAA 316

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR + LDPAL+R GR+DRKIEFP P E+ + RI  IH+ +M +  DVN +EL  + DD 
Sbjct:   317 TNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDF 376

Query:   122 SGADIKAIC 130
             +GA +KA+C
Sbjct:   377 NGAQLKAVC 385


>FB|FBgn0020369 [details] [associations]
            symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
            species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
            "proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
            "microtubule associated complex" evidence=IDA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
            EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
            UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
            IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
            PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
            KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
            InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
            GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
            Uniprot:O18413
        Length = 405

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 76/131 (58%), Positives = 103/131 (78%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +S SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   233 LFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 292

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LDPAL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   293 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 352

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   353 ASGAEVKGVCT 363


>FB|FBgn0028684 [details] [associations]
            symbol:Rpt5 "Regulatory particle triple-A ATPase 5"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 HSSP:Q01853 TIGRFAMs:TIGR01242 GO:GO:0008540
            ChiTaRS:PSMC3 FlyBase:FBgn0028684 EMBL:AF134402
            ProteinModelPortal:Q9XZC3 STRING:Q9XZC3 PRIDE:Q9XZC3
            InParanoid:Q9XZC3 ArrayExpress:Q9XZC3 Bgee:Q9XZC3 Uniprot:Q9XZC3
        Length = 431

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 76/129 (58%), Positives = 102/129 (79%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E AP+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQL+GF S  D+KVI A
Sbjct:   265 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLNGFSSTADIKVIAA 324

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++ L PAL+R GR+DRKIEFP P+E+ + RI  IH+ +M ++ DVN +EL  + DD 
Sbjct:   325 TNRVDIL-PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDF 383

Query:   122 SGADIKAIC 130
             +GA  KA+C
Sbjct:   384 NGAQCKAVC 392


>POMBASE|SPAC3A11.12c [details] [associations]
            symbol:rpt5 "19S proteasome regulatory subunit Rpt5
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPAC3A11.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 GO:GO:0008540
            OMA:GALMYGP EMBL:AB012136 PIR:T11634 RefSeq:XP_001713083.1
            ProteinModelPortal:O14126 STRING:O14126 PRIDE:O14126
            EnsemblFungi:SPAC3A11.12c.1 GeneID:3361462 KEGG:spo:SPAC3A11.12c
            OrthoDB:EOG40VZZ2 NextBio:20811506 Uniprot:O14126
        Length = 438

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 74/129 (57%), Positives = 104/129 (80%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E +P+I+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF S   VKVI A
Sbjct:   271 FALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 330

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR++TLDPAL+R GR+DRK+EFPLP+E+ +  I  IH+ +M + +D+N +EL  + D+ 
Sbjct:   331 TNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEY 390

Query:   122 SGADIKAIC 130
             +GA +K++C
Sbjct:   391 NGAMLKSVC 399


>CGD|CAL0006022 [details] [associations]
            symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0032968 "positive regulation of
            transcription elongation from RNA polymerase II promoter"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051091 "positive regulation
            of sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
            GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
        Length = 401

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 75/131 (57%), Positives = 100/131 (76%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R + +SGG+ E+QRTMLELLNQLDGF+S  D+K+IM
Sbjct:   229 LFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDIKIIM 288

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR++ LDPAL+RPGRIDRKIEFP P    +  I  IH+  M L   +NL+++    + 
Sbjct:   289 ATNRLDILDPALLRPGRIDRKIEFPAPTVAARTDILKIHSRSMNLTRGINLRKIAEKMNG 348

Query:   121 LSGADIKAICT 131
              SGAD+K +CT
Sbjct:   349 CSGADVKGVCT 359


>TAIR|locus:2036099 [details] [associations]
            symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
            binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
            pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
            development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
            beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
            organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
            GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
            GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
            EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
            IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
            UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
            STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
            GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
            InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
            Genevestigator:O04019 Uniprot:O04019
        Length = 423

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 77/129 (59%), Positives = 99/129 (76%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E +P I+FIDEIDA+GTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI A
Sbjct:   256 FLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 315

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR + LDPAL+R GR+DRKIEFP P E+ + RI  IH+ +M +  DVN +EL  + DD 
Sbjct:   316 TNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDF 375

Query:   122 SGADIKAIC 130
             +GA +KA+C
Sbjct:   376 NGAQLKAVC 384


>UNIPROTKB|F1LZ09 [details] [associations]
            symbol:F1LZ09 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR005937 Pfam:PF00004 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00780208
            Ensembl:ENSRNOT00000039743 Uniprot:F1LZ09
        Length = 369

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 75/130 (57%), Positives = 103/130 (79%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F + +E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD    VK IM
Sbjct:   199 VFHLDKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNISVKAIM 258

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDP L+RPG +D KIEFPLPD + KR IF+  TS+M L+E+VN+++ +   D 
Sbjct:   259 ATNRKDTLDPTLLRPGHLDHKIEFPLPDHR-KRLIFSTITSKMNLSEEVNVEDYVACPDK 317

Query:   121 LSGADIKAIC 130
             +SGADI +IC
Sbjct:   318 ISGADINSIC 327


>CGD|CAL0001552 [details] [associations]
            symbol:PR26 species:5476 "Candida albicans" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 78/130 (60%), Positives = 103/130 (79%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E++P+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD    VKVIM
Sbjct:   240 VFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTVKVIM 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             ATNR +TLDPAL+RPGR+DRKIEFP L D + +R IF+   S+M+LA + +L  LI+  D
Sbjct:   300 ATNRADTLDPALLRPGRLDRKIEFPSLKDRRERRLIFSTIASKMSLAPEADLDSLIIRND 359

Query:   120 DLSGADIKAI 129
              LSGA I AI
Sbjct:   360 PLSGAVIAAI 369


>UNIPROTKB|F1NU79 [details] [associations]
            symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
            Ensembl:ENSGALT00000000469 Uniprot:F1NU79
        Length = 412

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   240 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   300 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 359

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   360 ASGAEVKGVCT 370


>UNIPROTKB|P62194 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
            hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
            factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
            UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
            PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
            KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
            InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
            ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
        Length = 406

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   234 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 293

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   294 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 353

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   354 ASGAEVKGVCT 364


>UNIPROTKB|P62195 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
            "nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IPI] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043069 "negative regulation of programmed cell
            death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
            [GO:0003712 "transcription cofactor activity" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
            GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
            EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
            OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
            EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
            IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
            RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
            PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
            MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
            PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
            Ensembl:ENST00000375812 Ensembl:ENST00000580864
            Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
            GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
            neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
            PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
            NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
            Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
        Length = 406

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   234 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 293

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   294 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 353

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   354 ASGAEVKGVCT 364


>UNIPROTKB|P62197 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0008134 "transcription factor binding"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
            ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
            Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
            Uniprot:P62197
        Length = 406

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   234 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 293

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   294 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 353

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   354 ASGAEVKGVCT 364


>UNIPROTKB|Q4RG45 [details] [associations]
            symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
            genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008134 "transcription factor binding" evidence=ISS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
            GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
            ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
        Length = 406

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   234 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 293

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   294 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 353

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   354 ASGAEVKGVCT 364


>UNIPROTKB|Q5A0L8 [details] [associations]
            symbol:PR26 "Likely 26S proteasome regulatory particle
            ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 78/130 (60%), Positives = 103/130 (79%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E++P+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGFD    VKVIM
Sbjct:   240 VFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTVKVIM 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             ATNR +TLDPAL+RPGR+DRKIEFP L D + +R IF+   S+M+LA + +L  LI+  D
Sbjct:   300 ATNRADTLDPALLRPGRLDRKIEFPSLKDRRERRLIFSTIASKMSLAPEADLDSLIIRND 359

Query:   120 DLSGADIKAI 129
              LSGA I AI
Sbjct:   360 PLSGAVIAAI 369


>UNIPROTKB|Q6AZU7 [details] [associations]
            symbol:Q6AZU7 "Putative uncharacterized protein"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
            binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
            ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
        Length = 414

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   242 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 301

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   302 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 361

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   362 ASGAEVKGVCT 372


>UNIPROTKB|Q6P380 [details] [associations]
            symbol:psmc5 "Putative uncharacterized protein MGC75584"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
            ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
            KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
            Uniprot:Q6P380
        Length = 414

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   242 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 301

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   302 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 361

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   362 ASGAEVKGVCT 372


>MGI|MGI:105047 [details] [associations]
            symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
            ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=ISO;ISA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
            evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
            binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
            GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
            GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
            OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
            EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
            RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
            SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
            REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
            PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
            KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
            Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
        Length = 406

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   234 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 293

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   294 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 353

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   354 ASGAEVKGVCT 364


>RGD|708376 [details] [associations]
            symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
            binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0008134 "transcription factor binding" evidence=ISO;ISS]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
            evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
            complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
            GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
            OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
            IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
            ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
            PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
            Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
            UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
            ArrayExpress:P62198 Genevestigator:P62198
            GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
        Length = 406

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   234 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 293

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   294 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 353

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   354 ASGAEVKGVCT 364


>WB|WBGene00018991 [details] [associations]
            symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
            regulation of locomotion" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
            GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
            SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
            EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
            UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
            OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
        Length = 432

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 73/131 (55%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R + + GG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   260 LFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP PDEK + +I  IH+ +M L   + + ++      
Sbjct:   320 ATNRIDILDSALLRPGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPG 379

Query:   121 LSGADIKAICT 131
              SGA++K++CT
Sbjct:   380 ASGAEVKSVCT 390


>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
            symbol:psmc5 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
            UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
            GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
            Uniprot:Q6AZC1
        Length = 406

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   234 LFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 293

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   294 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 353

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   354 ASGAEVKGVCT 364


>SGD|S000003016 [details] [associations]
            symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
            "proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
            "chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IMP] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0019904 "protein domain specific binding"
            evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
            repair" evidence=IGI] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IMP]
            [GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
            GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
            GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
            GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
            OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
            EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
            RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
            DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
            PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
            KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
            GermOnline:YGL048C Uniprot:Q01939
        Length = 405

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 72/131 (54%), Positives = 100/131 (76%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R + + GG+ E+QRTMLELLNQLDGF++  ++K+IM
Sbjct:   233 LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM 292

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR++ LDPAL+RPGRIDRKIEFP P    +  I  IH+ +M L   +NL+++    + 
Sbjct:   293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNG 352

Query:   121 LSGADIKAICT 131
              SGAD+K +CT
Sbjct:   353 CSGADVKGVCT 363


>ASPGD|ASPL0000036562 [details] [associations]
            symbol:AN2904 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
            OMA:EDAYSAQ Uniprot:C8VJ79
        Length = 422

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 76/130 (58%), Positives = 105/130 (80%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E++P+I+FIDEIDA+ TKR+D+ +G +RE+QR +LELLNQ+DGF+   +VKVIM
Sbjct:   251 VFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQTSNVKVIM 310

Query:    61 ATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             ATNR +TLDPAL+RPGR+DRKIEFP L D + +R IF+   S+M+L+ +V+L  LI+  +
Sbjct:   311 ATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNE 370

Query:   120 DLSGADIKAI 129
              LSGA I AI
Sbjct:   371 PLSGAVIAAI 380


>SGD|S000002802 [details] [associations]
            symbol:RPT3 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002802 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0006511 GO:GO:0017111 GO:GO:0045899 EMBL:U32274
            KO:K07101 RefSeq:NP_010687.3 GeneID:852008 KEGG:sce:YDR399W
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 OrthoDB:EOG46HKKC
            EMBL:X73570 EMBL:U06229 PIR:S69678 RefSeq:NP_010682.3 PDB:2DZN
            PDB:2DZO PDBsum:2DZN PDBsum:2DZO ProteinModelPortal:P33298
            SMR:P33298 DIP:DIP-1587N IntAct:P33298 MINT:MINT-383865
            STRING:P33298 PaxDb:P33298 PeptideAtlas:P33298 EnsemblFungi:YDR394W
            GeneID:852003 KEGG:sce:YDR394W EvolutionaryTrace:P33298
            NextBio:970192 Genevestigator:P33298 GermOnline:YDR394W
            Uniprot:P33298
        Length = 428

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 76/130 (58%), Positives = 102/130 (78%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E+APSI+FIDE+D++ TKR+D+ +G +RE+QR ++ELL Q+DGFD   +VKVIM
Sbjct:   257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316

Query:    61 ATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             ATNR +TLDPAL+RPGR+DRKIEFP L D + +R IF    S+M+LA + +L  LI+  D
Sbjct:   317 ATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRND 376

Query:   120 DLSGADIKAI 129
              LSGA I AI
Sbjct:   377 SLSGAVIAAI 386


>DICTYBASE|DDB_G0292382 [details] [associations]
            symbol:psmC5 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
            GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
            ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
            GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
            ProtClustDB:CLSZ2429412 Uniprot:P34124
        Length = 403

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 75/132 (56%), Positives = 102/132 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG-EREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF +A EHAPSI+F+DEID++G+ R +S SGG + E+QRTMLELLNQLDGF+S  ++KV+
Sbjct:   230 LFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVL 289

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             M TNRI+ LDPAL+RPGRIDRKIEFP P +  +  I  IH+ +M L   +NL+++    +
Sbjct:   290 MCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMN 349

Query:   120 DLSGADIKAICT 131
               SGA++KA+CT
Sbjct:   350 GASGAELKAVCT 361


>UNIPROTKB|P46470 [details] [associations]
            symbol:psmc5 "26S protease regulatory subunit 8"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
            UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
            KEGG:xla:397968 Uniprot:P46470
        Length = 461

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   229 LFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 287

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   288 ATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 347

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   348 ASGAEVKGVCT 358


>POMBASE|SPBC23G7.12c [details] [associations]
            symbol:rpt6 "19S proteasome regulatory subunit Rpt6
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
            cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
            OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
            ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
            EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
            OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
        Length = 403

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 74/132 (56%), Positives = 100/132 (75%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF +A EHAPSI+F+DEID++G+ R DS+ G G+ E+QRTMLELLNQLDGF++  ++KVI
Sbjct:   230 LFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVI 289

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             MATNRI+ LDPAL+RPGRIDRKIEFP P  + +  I  IH+  M L   ++L+ +    +
Sbjct:   290 MATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMN 349

Query:   120 DLSGADIKAICT 131
               SGA++K +CT
Sbjct:   350 GASGAELKGVCT 361


>TAIR|locus:2147670 [details] [associations]
            symbol:RPT6A "regulatory particle triple-A ATPase 6A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
            IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
            ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
            PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
            KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
            OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
        Length = 419

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 74/132 (56%), Positives = 104/132 (78%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF +A EHAPSI+F+DEID++G+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+
Sbjct:   246 LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVL 305

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I  IH+ +M L   ++L+++    +
Sbjct:   306 MATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMN 365

Query:   120 DLSGADIKAICT 131
               SGA++KA+CT
Sbjct:   366 GASGAELKAVCT 377


>TAIR|locus:2147685 [details] [associations]
            symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
            EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
            IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
            ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
            PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
            KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
            OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
        Length = 419

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 74/132 (56%), Positives = 104/132 (78%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF +A EHAPSI+F+DEID++G+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+
Sbjct:   246 LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVL 305

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I  IH+ +M L   ++L+++    +
Sbjct:   306 MATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMN 365

Query:   120 DLSGADIKAICT 131
               SGA++KA+CT
Sbjct:   366 GASGAELKAVCT 377


>CGD|CAL0002261 [details] [associations]
            symbol:RPT5 species:5476 "Candida albicans" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0002261 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000086 EMBL:AACQ01000085 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 RefSeq:XP_715432.1 RefSeq:XP_715502.1
            ProteinModelPortal:Q5A0X3 STRING:Q5A0X3 GeneID:3642858
            GeneID:3642911 KEGG:cal:CaO19.10635 KEGG:cal:CaO19.3123
            Uniprot:Q5A0X3
        Length = 454

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 73/129 (56%), Positives = 100/129 (77%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E AP+I+FIDE+DA+GTKR+DS+  G+RE+QRTMLELLNQLDGF S   VKV+ A
Sbjct:   286 FALAKEKAPTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAA 345

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQELIMAKDD 120
             TNR++TLDPAL+R GR+DRKIEFPLP E+ +  +  IH  ++    + VN +EL  + D+
Sbjct:   346 TNRVDTLDPALLRSGRLDRKIEFPLPSEEARESVLKIHARKLHCDNNSVNWRELARSTDE 405

Query:   121 LSGADIKAI 129
              +GA +KA+
Sbjct:   406 FNGAQLKAV 414


>ASPGD|ASPL0000064945 [details] [associations]
            symbol:AN6988 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
            EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
            RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
            EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
            Uniprot:Q5AXJ2
        Length = 389

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 72/131 (54%), Positives = 97/131 (74%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R DS   G+ E+QRTMLELLNQLDGF+   ++K+IM
Sbjct:   217 LFVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFEPTKNIKIIM 276

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR++ LDPAL+RPGRIDRKIEFP P  + +  I  IH+  M L   +NL ++    + 
Sbjct:   277 ATNRLDILDPALLRPGRIDRKIEFPPPSVEARADILRIHSRSMNLTRGINLTKIAEKMNG 336

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   337 CSGAELKGVCT 347


>DICTYBASE|DDB_G0276917 [details] [associations]
            symbol:psmC2 "26S proteasome ATPase 2 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
            "proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
            HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
            STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
            GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
            ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
        Length = 428

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 70/131 (53%), Positives = 97/131 (74%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF++A      I+F DE+DA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   255 LFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 314

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRK+EF LPD + +  IF IH   M+ A D+  + L     +
Sbjct:   315 ATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPN 374

Query:   121 LSGADIKAICT 131
              +GADI+++CT
Sbjct:   375 STGADIRSVCT 385


>UNIPROTKB|O42587 [details] [associations]
            symbol:psmc3-a "26S protease regulatory subunit 6A-A"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
            RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
            PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
        Length = 405

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 71/113 (62%), Positives = 92/113 (81%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   256 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAA 315

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQEL 114
             TNR++ LDPAL+R GR+DRKIEFP+P+E+ + RI  IH+ +M ++ DVN +EL
Sbjct:   316 TNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEEL 368


>TAIR|locus:2024822 [details] [associations]
            symbol:RPT1A "regulatory particle triple-A 1A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
            PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
            ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
            PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
            KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
            KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
            Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
        Length = 426

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 70/131 (53%), Positives = 98/131 (74%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF++A      IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV+M
Sbjct:   253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRK+EF LPD +++ +IF IHT  M    D+  + L     +
Sbjct:   313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372

Query:   121 LSGADIKAICT 131
              +GADI+++CT
Sbjct:   373 STGADIRSVCT 383


>FB|FBgn0039788 [details] [associations]
            symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
            species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
            GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
            UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
            STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
            KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
            InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
            NextBio:834976 Uniprot:Q9VA54
        Length = 399

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 72/131 (54%), Positives = 101/131 (77%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G+ R ++ +G + E+QRTMLELLNQLDGF++  ++KVIM
Sbjct:   228 LFVMAREHAPSIIFMDEIDSIGSARLETGTG-DSEVQRTMLELLNQLDGFEATKNIKVIM 286

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNRI+ LD AL+RPGRIDRKIEFP P+E+ +  I  IH+ +M L   +NL+++      
Sbjct:   287 ATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEEMPG 346

Query:   121 LSGADIKAICT 131
              SGA++K +CT
Sbjct:   347 ASGAEVKGVCT 357


>POMBASE|SPCC576.10c [details] [associations]
            symbol:rpt3 "19S proteasome regulatory subunit Rpt3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
            "ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
            ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
            EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
            OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
        Length = 389

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 74/130 (56%), Positives = 100/130 (76%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR+A E+AP+I+FIDEIDA+ TKR+D+ +G +RE+QR ++ELL Q+DGFD   +VKVIM
Sbjct:   219 VFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIM 278

Query:    61 ATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
             ATNR +TLDPAL+RPGR+DRKIEFP   D + +R +F   T++M L+ +V+L   IM  D
Sbjct:   279 ATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPD 338

Query:   120 DLSGADIKAI 129
               SGA I AI
Sbjct:   339 ASSGAQIAAI 348


>WB|WBGene00004504 [details] [associations]
            symbol:rpt-4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 69/131 (52%), Positives = 99/131 (75%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P IVF+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFDS G VKVIM
Sbjct:   235 MFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIM 294

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIE  LP+E+++  I  IH++++T   +++ + ++   D 
Sbjct:   295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354

Query:   121 LSGADIKAICT 131
              S AD++ +CT
Sbjct:   355 FSAADLRNVCT 365


>UNIPROTKB|O17071 [details] [associations]
            symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
            species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 69/131 (52%), Positives = 99/131 (75%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P IVF+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFDS G VKVIM
Sbjct:   235 MFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIM 294

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIE  LP+E+++  I  IH++++T   +++ + ++   D 
Sbjct:   295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354

Query:   121 LSGADIKAICT 131
              S AD++ +CT
Sbjct:   355 FSAADLRNVCT 365


>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory
            subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
            GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
            GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
            PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
            KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 67/131 (51%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+EH P I+F+DEIDA+G +R+   +  +REIQRT++ELLN LDGF+  G+VK+IM
Sbjct:   222 MFNYAKEHQPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIM 281

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR+DRKIE PLP+E  +  I  IH ++MT   D++ + +    D 
Sbjct:   282 ATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDG 341

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   342 FNGADLRNVCT 352


>UNIPROTKB|Q8IEQ1 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory subunit,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
            RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
            EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
            EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 67/131 (51%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+EH P I+F+DEIDA+G +R+   +  +REIQRT++ELLN LDGF+  G+VK+IM
Sbjct:   222 MFNYAKEHQPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIM 281

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR+DRKIE PLP+E  +  I  IH ++MT   D++ + +    D 
Sbjct:   282 ATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDG 341

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   342 FNGADLRNVCT 352


>FB|FBgn0028685 [details] [associations]
            symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:1901838 "positive regulation of transcription of nuclear large
            rRNA transcript from RNA polymerase I promoter" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
            regulatory region sequence-specific DNA binding" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
            GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
            TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
            ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
            PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
            OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
            Uniprot:Q8SZ19
        Length = 397

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 65/131 (49%), Positives = 98/131 (74%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFDS G VK+IM
Sbjct:   226 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 285

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR ++LDPAL+RPGR+DRKIE PLP+E+ +  I  IH  ++    +++ + ++   D+
Sbjct:   286 ATNRPDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   346 FNGADLRNVCT 356


>FB|FBgn0028687 [details] [associations]
            symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
            EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
            SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
            GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
            FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
            OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 68/131 (51%), Positives = 95/131 (72%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRK+EF LPD+  +  IF IH   M++  D+    L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>UNIPROTKB|E1C4V5 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
            Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
        Length = 424

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   251 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 310

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   311 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 370

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   371 STGAEIRSVCT 381


>UNIPROTKB|F1NFL8 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
            IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
            Uniprot:F1NFL8
        Length = 432

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   259 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 318

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   319 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 378

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   379 STGAEIRSVCT 389


>UNIPROTKB|Q5E9F9 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
            EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
            UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
            Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
            GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
            Uniprot:Q5E9F9
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>UNIPROTKB|F1PPH7 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
            OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
            RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
            Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
            Uniprot:F1PPH7
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>UNIPROTKB|B7Z5E2 [details] [associations]
            symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
            regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
            HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
            IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
            Uniprot:B7Z5E2
        Length = 296

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   123 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 182

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   183 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 242

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   243 STGAEIRSVCT 253


>UNIPROTKB|P35998 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
            evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
            GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
            GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
            EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
            EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
            RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
            ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
            MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
            OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
            REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
            PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
            Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
            GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
            neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
            PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
            ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
            Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>UNIPROTKB|F1SB53 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
        Length = 475

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   302 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 361

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   362 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 421

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   422 STGAEIRSVCT 432


>UNIPROTKB|I3LJ30 [details] [associations]
            symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
        Length = 434

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   261 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 320

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   321 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 380

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   381 STGAEIRSVCT 391


>UNIPROTKB|P46472 [details] [associations]
            symbol:psmc2 "26S protease regulatory subunit 7"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
            RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
            GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
            Uniprot:P46472
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>UNIPROTKB|Q4R4R0 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
            Uniprot:Q4R4R0
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>MGI|MGI:109555 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
            ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
            EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
            UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
            STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
            SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
            Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
            Uniprot:P46471
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>RGD|3428 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase
          2" species:10116 "Rattus norvegicus" [GO:0000502 "proteasome complex"
          evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
          evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
          "nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
          [GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006200 "ATP
          catabolic process" evidence=ISO] [GO:0006511 "ubiquitin-dependent
          protein catabolic process" evidence=IEA;ISO] [GO:0016887 "ATPase
          activity" evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
          evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
          evidence=IEA] [GO:0022624 "proteasome accessory complex"
          evidence=IEA;ISO;ISS] [GO:0030163 "protein catabolic process"
          evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
          InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
          InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
          RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
          GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242
          HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03061
          CTD:5701 OrthoDB:EOG4RXZ05 EMBL:D50694 EMBL:BC061542 EMBL:U13895
          IPI:IPI00421600 RefSeq:NP_150239.1 UniGene:Rn.1202
          ProteinModelPortal:Q63347 IntAct:Q63347 MINT:MINT-1794034
          STRING:Q63347 PhosphoSite:Q63347 PRIDE:Q63347 GeneID:25581
          KEGG:rno:25581 InParanoid:Q63347 NextBio:607227 Genevestigator:Q63347
          GermOnline:ENSRNOG00000012026 Uniprot:Q63347
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>UNIPROTKB|Q63347 [details] [associations]
            symbol:Psmc2 "26S protease regulatory subunit 7"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 CTD:5701 OrthoDB:EOG4RXZ05
            EMBL:D50694 EMBL:BC061542 EMBL:U13895 IPI:IPI00421600
            RefSeq:NP_150239.1 UniGene:Rn.1202 ProteinModelPortal:Q63347
            IntAct:Q63347 MINT:MINT-1794034 STRING:Q63347 PhosphoSite:Q63347
            PRIDE:Q63347 GeneID:25581 KEGG:rno:25581 InParanoid:Q63347
            NextBio:607227 Genevestigator:Q63347 GermOnline:ENSRNOG00000012026
            Uniprot:Q63347
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
            symbol:psmc2 "proteasome (prosome, macropain) 26S
            subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
            OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
            IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
            Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
            InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 69/131 (52%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  IF IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>TAIR|locus:2028200 [details] [associations]
            symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
            "proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
            "cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
            vesicle transport" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
            RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
            SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
            EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
            GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
            Uniprot:Q9MAK9
        Length = 399

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 67/131 (51%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A EH P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+IM
Sbjct:   224 MFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 283

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR+DRKIE PLP+E+++  I  IH S +    +++ + ++   + 
Sbjct:   284 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEG 343

Query:   121 LSGADIKAICT 131
              +GAD++ ICT
Sbjct:   344 FNGADLRNICT 354


>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
            symbol:PFL2345c "tat-binding protein homolog"
            species:5833 "Plasmodium falciparum" [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0003712 "transcription cofactor activity" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
            GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
            RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
            MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
            GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
            Uniprot:Q8I4U5
        Length = 435

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 69/131 (52%), Positives = 100/131 (76%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G++R +   G + E+QRTM+ELLNQLDGF+S  ++KVIM
Sbjct:   264 LFVMAREHAPSIIFMDEIDSIGSQRIEGEHG-DSEVQRTMMELLNQLDGFESTQNIKVIM 322

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
              TNRI+ LD AL+RPGRIDRKIEFP P+ + +  I  IH+ +M L   +++ ++    ++
Sbjct:   323 CTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIATDMNN 382

Query:   121 LSGADIKAICT 131
              SGA++KA+CT
Sbjct:   383 CSGAEVKAVCT 393


>UNIPROTKB|Q8I4U5 [details] [associations]
            symbol:PFL2345c "Tat-binding protein homolog" species:36329
            "Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
            ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
            PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
            KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
        Length = 435

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 69/131 (52%), Positives = 100/131 (76%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A EHAPSI+F+DEID++G++R +   G + E+QRTM+ELLNQLDGF+S  ++KVIM
Sbjct:   264 LFVMAREHAPSIIFMDEIDSIGSQRIEGEHG-DSEVQRTMMELLNQLDGFESTQNIKVIM 322

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
              TNRI+ LD AL+RPGRIDRKIEFP P+ + +  I  IH+ +M L   +++ ++    ++
Sbjct:   323 CTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIATDMNN 382

Query:   121 LSGADIKAICT 131
              SGA++KA+CT
Sbjct:   383 CSGAEVKAVCT 393


>UNIPROTKB|Q5R8D7 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
            UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
            GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
            Uniprot:Q5R8D7
        Length = 433

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 68/131 (51%), Positives = 95/131 (72%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 319

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIEF LPD + +  I  IH   M++  D+  + L     +
Sbjct:   320 ATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPN 379

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   380 STGAEIRSVCT 390


>TAIR|locus:2159996 [details] [associations]
            symbol:RPT4A "regulatory particle triple-A ATPase 4A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
            IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
            ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
            PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
            KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
            OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
        Length = 399

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/131 (50%), Positives = 97/131 (74%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A EH P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD+ G VK+IM
Sbjct:   224 MFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIM 283

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR+DRKIE PLP+E+++  I  IH + +    +++ + ++   + 
Sbjct:   284 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEG 343

Query:   121 LSGADIKAICT 131
              +GAD++ ICT
Sbjct:   344 FNGADLRNICT 354


>ASPGD|ASPL0000032311 [details] [associations]
            symbol:AN5747 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
        Length = 393

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 67/131 (51%), Positives = 96/131 (73%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+EH P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G  K+IM
Sbjct:   222 MFGYAKEHEPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIM 281

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+R GR+DRKIE PLP+E  +  I  IH+S + +  D++ + ++   D 
Sbjct:   282 ATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQMEGDIDFESVVKMSDG 341

Query:   121 LSGADIKAICT 131
             L+GAD++ + T
Sbjct:   342 LNGADLRNVVT 352


>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory
            subunit 7, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
            GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
            RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
            MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
            GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
            Uniprot:Q8IEK3
        Length = 420

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 68/131 (51%), Positives = 99/131 (75%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF++A+     I+FIDE+DA+G  R D ++ G+ E+QRTMLE++NQLDGFD+RG++KV+M
Sbjct:   247 LFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLM 306

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLD AL+RPGRIDR+IEF LPD + +  IF IH + M ++ DV  + L     +
Sbjct:   307 ATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLARLCPN 366

Query:   121 LSGADIKAICT 131
              +G+DI+++CT
Sbjct:   367 STGSDIRSVCT 377


>UNIPROTKB|Q8IEK3 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory subunit 7,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
            EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
            KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
            ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
            PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
            KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
        Length = 420

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 68/131 (51%), Positives = 99/131 (75%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF++A+     I+FIDE+DA+G  R D ++ G+ E+QRTMLE++NQLDGFD+RG++KV+M
Sbjct:   247 LFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLM 306

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLD AL+RPGRIDR+IEF LPD + +  IF IH + M ++ DV  + L     +
Sbjct:   307 ATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLARLCPN 366

Query:   121 LSGADIKAICT 131
              +G+DI+++CT
Sbjct:   367 STGSDIRSVCT 377


>WB|WBGene00004501 [details] [associations]
            symbol:rpt-1 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0016887 GO:GO:0000502 GO:GO:0006511 EMBL:Z78012
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 PIR:T20152
            RefSeq:NP_506005.1 ProteinModelPortal:Q18787 SMR:Q18787
            IntAct:Q18787 MINT:MINT-212537 STRING:Q18787 PaxDb:Q18787
            PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1 EnsemblMetazoa:C52E4.4.2
            GeneID:179641 KEGG:cel:CELE_C52E4.4 UCSC:C52E4.4.1 CTD:179641
            WormBase:C52E4.4 InParanoid:Q18787 NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 68/131 (51%), Positives = 93/131 (70%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDAVG  R+D   GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   262 LFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRK+EF LPD   +  I  IH  +M++  D+    L     +
Sbjct:   322 ATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPN 381

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   382 STGAEIRSVCT 392


>UNIPROTKB|Q18787 [details] [associations]
            symbol:rpt-1 "26S protease regulatory subunit 7"
            species:6239 "Caenorhabditis elegans" [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0016887 GO:GO:0000502
            GO:GO:0006511 EMBL:Z78012 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 PIR:T20152 RefSeq:NP_506005.1
            ProteinModelPortal:Q18787 SMR:Q18787 IntAct:Q18787 MINT:MINT-212537
            STRING:Q18787 PaxDb:Q18787 PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1
            EnsemblMetazoa:C52E4.4.2 GeneID:179641 KEGG:cel:CELE_C52E4.4
            UCSC:C52E4.4.1 CTD:179641 WormBase:C52E4.4 InParanoid:Q18787
            NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 68/131 (51%), Positives = 93/131 (70%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      ++F DEIDAVG  R+D   GG+ E+QRTMLEL+NQLDGFD RG++KV+M
Sbjct:   262 LFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRK+EF LPD   +  I  IH  +M++  D+    L     +
Sbjct:   322 ATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPN 381

Query:   121 LSGADIKAICT 131
              +GA+I+++CT
Sbjct:   382 STGAEIRSVCT 392


>FB|FBgn0036224 [details] [associations]
            symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
            species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
            GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
            UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
            STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
            KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
            InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
            NextBio:813228 Uniprot:Q9VTQ9
        Length = 398

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 65/131 (49%), Positives = 95/131 (72%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+ G VK+IM
Sbjct:   227 MFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIM 286

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRK+E PLP+E  +  I  IH   +    +++ + ++   D 
Sbjct:   287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346

Query:   121 LSGADIKAICT 131
              +GAD++ ICT
Sbjct:   347 FNGADLRNICT 357


>SGD|S000005785 [details] [associations]
            symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IMP] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IMP] [GO:0032968 "positive regulation
            of transcription elongation from RNA polymerase II promoter"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=IGI] [GO:0019904 "protein domain specific binding"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
            GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
            PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
            ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
            MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
            EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
            NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
            Uniprot:P53549
        Length = 437

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 64/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+EH P I+F+DE+DA+G +R+   +  +REIQRT++ELL Q+DGFD+ G  K+IM
Sbjct:   266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRK+E PLP+E  +  IF IHT+++    + + +  +   D 
Sbjct:   326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDG 385

Query:   121 LSGADIKAICT 131
              +GADI+   T
Sbjct:   386 FNGADIRNCAT 396


>CGD|CAL0005689 [details] [associations]
            symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
            STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
            KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
        Length = 444

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/131 (49%), Positives = 95/131 (72%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      I+F DE+DA+G  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ 
Sbjct:   271 LFEMARTKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 330

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR  TLDPAL+RPGRIDRK+EF LPD + +  IF IH+  M++ +D+  + +     +
Sbjct:   331 ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKTMSVEKDIRWELISRLCPN 390

Query:   121 LSGADIKAICT 131
              +GA+++++CT
Sbjct:   391 ATGAELRSVCT 401


>UNIPROTKB|Q9FXT8 [details] [associations]
            symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
            sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
            GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
            EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
            OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
            EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
            STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
            KEGG:osa:4328642 Uniprot:Q9FXT8
        Length = 400

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 63/131 (48%), Positives = 95/131 (72%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+IM
Sbjct:   225 MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIM 284

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR+DRKIE PLP+E+ +  +  IH + +    +++ + ++   + 
Sbjct:   285 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYEAVVKLAEG 344

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   345 FNGADLRNVCT 355


>POMBASE|SPCC1682.16 [details] [associations]
            symbol:rpt4 "19S proteasome regulatory subunit Rpt4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISM] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=NAS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
            PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
            STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
            GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
            NextBio:20800360 Uniprot:O74445
        Length = 388

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 64/131 (48%), Positives = 95/131 (72%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+EH P ++F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD  G  K+IM
Sbjct:   217 MFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIM 276

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKIE PLP+E  +  I  IH  +++   +++ + L+   D 
Sbjct:   277 ATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDG 336

Query:   121 LSGADIKAICT 131
              +GAD++ + T
Sbjct:   337 TNGADLRNVVT 347


>CGD|CAL0005827 [details] [associations]
            symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
            RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
            GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
            KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
        Length = 428

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 65/131 (49%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+EH P I+F+DE+DA+G +R+   +  +REIQRT++ELLNQ+DGFD+ G  K+IM
Sbjct:   257 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLGQTKIIM 316

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+R GR+DRKIE  LP+E  +  IF IHTS++    + + +  +   D 
Sbjct:   317 ATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFEAAVKMSDG 376

Query:   121 LSGADIKAICT 131
              +GADI+ + T
Sbjct:   377 FNGADIRNVVT 387


>ZFIN|ZDB-GENE-030131-304 [details] [associations]
            symbol:psmc6 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
            EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
            EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
            UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
            GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
            Uniprot:Q6DRD2
        Length = 389

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 64/131 (48%), Positives = 95/131 (72%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   218 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 277

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH+  +T   D++ + ++   D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   338 FNGADLRNVCT 348


>DICTYBASE|DDB_G0284517 [details] [associations]
            symbol:psmC6 "26S protease regulatory subunit S10B"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
            EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
            OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
        Length = 393

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 63/131 (48%), Positives = 93/131 (70%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P ++F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   222 MFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIM 281

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR+DRKIE PLP+E  +  +  IH + +T   DV+ + +    D 
Sbjct:   282 ATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADG 341

Query:   121 LSGADIKAICT 131
              + AD++ +CT
Sbjct:   342 FNAADLRNVCT 352


>SGD|S000001628 [details] [associations]
            symbol:RPT1 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IMP] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IDA] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IPI] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000001628 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:BK006944 GO:GO:0006511 GO:GO:0017111
            GO:GO:0045899 GO:GO:0045732 PDB:3VLF PDB:4A3V PDBsum:3VLF
            PDBsum:4A3V GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 OrthoDB:EOG4B01XN
            EMBL:Z22817 EMBL:X73571 EMBL:Z28145 PIR:S34354 RefSeq:NP_012777.1
            ProteinModelPortal:P33299 SMR:P33299 DIP:DIP-2883N IntAct:P33299
            MINT:MINT-612502 STRING:P33299 SWISS-2DPAGE:P33299 PaxDb:P33299
            PeptideAtlas:P33299 PRIDE:P33299 EnsemblFungi:YKL145W GeneID:853712
            KEGG:sce:YKL145W CYGD:YKL145w NextBio:974719 Genevestigator:P33299
            GermOnline:YKL145W Uniprot:P33299
        Length = 467

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 66/131 (50%), Positives = 93/131 (70%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      I+F DEIDAVG  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ 
Sbjct:   294 LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 353

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR  TLDPAL+RPGRIDRK+EF LPD + +  IF IH+  M++   +  + +     +
Sbjct:   354 ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPN 413

Query:   121 LSGADIKAICT 131
              +GA+++++CT
Sbjct:   414 STGAELRSVCT 424


>UNIPROTKB|F1NCS8 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
            IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
            Uniprot:F1NCS8
        Length = 403

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   232 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 291

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   352 FNGADLRNVCT 362


>UNIPROTKB|Q5ZKX2 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
            EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
            UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
            GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
            Uniprot:Q5ZKX2
        Length = 389

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   218 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 277

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   338 FNGADLRNVCT 348


>UNIPROTKB|F1MLV1 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
            UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
            Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
        Length = 389

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   218 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 277

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   338 FNGADLRNVCT 348


>UNIPROTKB|J9P1N0 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
            Uniprot:J9P1N0
        Length = 395

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   224 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 283

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   284 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 343

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   344 FNGADLRNVCT 354


>UNIPROTKB|P62333 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
            activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IC]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
            EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
            EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
            PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
            ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
            MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
            REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
            PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
            KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
            H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
            neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
            PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
            CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
            Uniprot:P62333
        Length = 389

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   218 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 277

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   338 FNGADLRNVCT 348


>UNIPROTKB|F1SFE6 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
            TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
            Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
            ArrayExpress:F1SFE6 Uniprot:F1SFE6
        Length = 403

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   232 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 291

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   352 FNGADLRNVCT 362


>UNIPROTKB|P62335 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:43179 "Spermophilus tridecemlineatus" [GO:0022624
            "proteasome accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
            SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
        Length = 389

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   218 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 277

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   338 FNGADLRNVCT 348


>MGI|MGI:1914339 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
            EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
            IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
            ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
            PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
            REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
            Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
            InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
            GermOnline:ENSMUSG00000021832 Uniprot:P62334
        Length = 389

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   218 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 277

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   338 FNGADLRNVCT 348


>RGD|1308825 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
            "plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
            complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
            GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
            IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
            STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
            InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
            Uniprot:Q32PW9
        Length = 381

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   210 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 269

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   330 FNGADLRNVCT 340


>RGD|2318218 [details] [associations]
            symbol:LOC100365869 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
            GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
            UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
            KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
        Length = 403

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/131 (48%), Positives = 94/131 (71%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   232 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 291

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351

Query:   121 LSGADIKAICT 131
              +GAD++ +CT
Sbjct:   352 FNGADLRNVCT 362


>ASPGD|ASPL0000034636 [details] [associations]
            symbol:AN2917 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001306
            EMBL:AACD01000051 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            OrthoDB:EOG4B01XN RefSeq:XP_660521.1 ProteinModelPortal:Q5B963
            STRING:Q5B963 EnsemblFungi:CADANIAT00010170 GeneID:2874156
            KEGG:ani:AN2917.2 Uniprot:Q5B963
        Length = 443

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 66/131 (50%), Positives = 92/131 (70%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      I+F DEIDAVG  R+D  +GG+ E+QRTMLEL+ QLDGFD+RG++KV+ 
Sbjct:   270 LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDARGNIKVMF 329

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR  TLDPAL+RPGRIDRKIEF LPD + +  I  IH   M++  D+  + +     +
Sbjct:   330 ATNRPSTLDPALMRPGRIDRKIEFSLPDVEGRANILRIHAKSMSVERDIRWELISRLCPN 389

Query:   121 LSGADIKAICT 131
              +GA+++++ T
Sbjct:   390 ATGAELRSVAT 400


>UNIPROTKB|Q2KIW6 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
            IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
            ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
            KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
            OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
        Length = 389

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 63/131 (48%), Positives = 93/131 (70%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+IM
Sbjct:   218 MFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIM 277

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +TLDPAL+RPGR+DRKI   LP+E+ +  I  IH   +T   +++ + ++   D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   121 LSGADIKAICT 131
              +GAD+  +CT
Sbjct:   338 FNGADLGNVCT 348


>POMBASE|SPBC16C6.07c [details] [associations]
            symbol:rpt1 "19S proteasome regulatory subunit Rpt1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
            OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
            IntAct:O42931 STRING:O42931 PRIDE:O42931
            EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
            OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
        Length = 438

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 64/131 (48%), Positives = 90/131 (68%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A      I+F DEIDA+G  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ 
Sbjct:   264 LFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLF 323

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR  TLD AL+RPGRIDRK+EF LPD + +  I  IH   M + +D+  + +      
Sbjct:   324 ATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPS 383

Query:   121 LSGADIKAICT 131
              +GA+++++CT
Sbjct:   384 QTGAELRSVCT 394


>UNIPROTKB|E9PKD5 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0017111 EMBL:AC090559 HGNC:HGNC:9549 ChiTaRS:PSMC3
            IPI:IPI00978735 ProteinModelPortal:E9PKD5 SMR:E9PKD5 PRIDE:E9PKD5
            Ensembl:ENST00000524447 ArrayExpress:E9PKD5 Bgee:E9PKD5
            Uniprot:E9PKD5
        Length = 294

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 54/79 (68%), Positives = 66/79 (83%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F +A+E APSI+FIDE+DA+GTKR+DS   G+RE+QRTMLELLNQLDGF     VKVI A
Sbjct:   216 FALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAA 275

Query:    62 TNRIETLDPALIRPGRIDR 80
             TNR++ LDPAL+R GR+DR
Sbjct:   276 TNRVDILDPALLRSGRLDR 294


>UNIPROTKB|E2RC37 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 CTD:166378 OMA:NDIRPSA
            EMBL:AAEX03011797 RefSeq:XP_540960.2 ProteinModelPortal:E2RC37
            Ensembl:ENSCAFT00000006393 GeneID:483840 KEGG:cfa:483840
            Uniprot:E2RC37
        Length = 893

 Score = 295 (108.9 bits), Expect = 6.0e-25, P = 6.0e-25
 Identities = 60/130 (46%), Positives = 83/130 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR A   +PSI+F DE+DA+  +R  S+SG      R + +LL ++DG +   DV ++ 
Sbjct:   712 IFRKARAVSPSIIFFDELDALAIER-GSSSGAGNVADRVLAQLLTEMDGIEQLKDVTILA 770

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +D AL+RPGRIDR I  PLPD  T+R I N+    M ++ DVNL ELI   D 
Sbjct:   771 ATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNDVNLDELIFQTDT 830

Query:   121 LSGADIKAIC 130
              SGA+I A+C
Sbjct:   831 YSGAEIIAVC 840

 Score = 198 (74.8 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 48/131 (36%), Positives = 73/131 (55%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A    PSI+FIDE+DA+  KR  + +  E+ +  ++L L++ +    S G V V+ 
Sbjct:   438 IFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEGSEGQVLVLG 497

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT-LAEDVNLQELIMAKD 119
             ATNR   LD AL RPGR D++IE  +P+   +  I      R+  L  +V L +L  +  
Sbjct:   498 ATNRPHALDAALRRPGRFDKEIEIGVPNAADRLDILQKLLQRVPHLLTEVELLQLANSAH 557

Query:   120 DLSGADIKAIC 130
                GAD+KA+C
Sbjct:   558 GYVGADLKALC 568


>TIGR_CMR|GSU_1180 [details] [associations]
            symbol:GSU_1180 "cell division protein FtsH"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            RefSeq:NP_952233.1 ProteinModelPortal:Q74DY5 SMR:Q74DY5
            GeneID:2686793 KEGG:gsu:GSU1180 PATRIC:22025134 OMA:VCQWGMS
            ProtClustDB:CLSK828230 BioCyc:GSUL243231:GH27-1166-MONOMER
            Uniprot:Q74DY5
        Length = 617

 Score = 291 (107.5 bits), Expect = 7.2e-25, P = 7.2e-25
 Identities = 56/127 (44%), Positives = 86/127 (67%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A++ APSI+FIDE+DAVG  R     GG  E ++T+ +LL+++DGFDS  +V V+ 
Sbjct:   259 LFATAKKSAPSIIFIDELDAVGRSRGAGLGGGHDEREQTLNQLLSEMDGFDSHDEVIVMA 318

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR +    PD + + +I ++HT ++ L +DV+L  +      
Sbjct:   319 ATNRPDVLDPALLRPGRFDRHVVIDRPDWRDREKILHVHTRKIPLDKDVDLAVIARGTPG 378

Query:   121 LSGADIK 127
             ++GAD++
Sbjct:   379 MAGADLE 385


>MGI|MGI:1927170 [details] [associations]
            symbol:Spata5 "spermatogenesis associated 5" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:1927170 GO:GO:0007275
            GO:GO:0005739 GO:GO:0005524 GO:GO:0030154 GO:GO:0007283
            eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 HSSP:Q9WZ49
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073
            CTD:166378 HOVERGEN:HBG108504 OMA:NDIRPSA OrthoDB:EOG43FGWF
            EMBL:AF049099 EMBL:AK011111 EMBL:AK144998 EMBL:AL669927
            EMBL:AL627074 EMBL:AL645968 IPI:IPI00649667 RefSeq:NP_001156983.1
            RefSeq:NP_067318.2 UniGene:Mm.172679 ProteinModelPortal:Q3UMC0
            SMR:Q3UMC0 PhosphoSite:Q3UMC0 PaxDb:Q3UMC0 PRIDE:Q3UMC0
            Ensembl:ENSMUST00000029277 Ensembl:ENSMUST00000108112 GeneID:57815
            KEGG:mmu:57815 UCSC:uc008pau.2 InParanoid:Q3UMC0 NextBio:314006
            Bgee:Q3UMC0 Genevestigator:Q3UMC0 Uniprot:Q3UMC0
        Length = 893

 Score = 287 (106.1 bits), Expect = 4.3e-24, P = 4.3e-24
 Identities = 58/130 (44%), Positives = 84/130 (64%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +FR A   APSI+F DE+DA+  +R  S+SG      R + +LL ++DG +   +V V+ 
Sbjct:   712 IFRKARAVAPSIIFFDELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLA 770

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +D AL+RPGRIDR I  PLPD  T+R I N+    M ++ +V+L EL++  D 
Sbjct:   771 ATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDT 830

Query:   121 LSGADIKAIC 130
              SGA+I A+C
Sbjct:   831 YSGAEIIAVC 840

 Score = 191 (72.3 bits), Expect = 8.1e-14, P = 8.1e-14
 Identities = 48/131 (36%), Positives = 71/131 (54%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A    PSI+FIDE+DA+  KR  + S  E+ +  ++L L++ +    S G V V+ 
Sbjct:   438 IFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLG 497

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT-LAEDVNLQELIMAKD 119
             ATNR + LD AL RPGR D++IE  +P+ + +  I      R+  L     L  L     
Sbjct:   498 ATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAH 557

Query:   120 DLSGADIKAIC 130
                GAD+KA+C
Sbjct:   558 GYVGADLKALC 568


>TIGR_CMR|GSU_1809 [details] [associations]
            symbol:GSU_1809 "cell division protein FtsH"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            RefSeq:NP_952859.2 GeneID:2688702 KEGG:gsu:GSU1809 PATRIC:22026473
            ProtClustDB:CLSK828573 BioCyc:GSUL243231:GH27-1860-MONOMER
            Uniprot:Q74C66
        Length = 610

 Score = 281 (104.0 bits), Expect = 8.5e-24, P = 8.5e-24
 Identities = 58/129 (44%), Positives = 81/129 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF   +++AP I+FIDEIDAVG  R     GG  E ++T+ +LL ++DGF+S   V +I 
Sbjct:   237 LFVQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIA 296

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++  P PD K +  I  +HT +  LA DV+L  +      
Sbjct:   297 ATNRPDVLDPALLRPGRFDRQVVVPQPDVKGREMILKVHTKKTPLASDVDLGVIARGTPG 356

Query:   121 LSGADIKAI 129
              SGAD+  +
Sbjct:   357 FSGADLSNV 365


>UNIPROTKB|Q2GIT4 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 EMBL:CP000235 GenomeReviews:CP000235_GR
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
            SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
            PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
            Uniprot:Q2GIT4
        Length = 611

 Score = 281 (104.0 bits), Expect = 8.5e-24, P = 8.5e-24
 Identities = 54/126 (42%), Positives = 81/126 (64%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F   ++HAP I+F+DEIDAVG  R     GG  E ++T+ +LL ++DGF+S   V +I 
Sbjct:   242 MFEQGKKHAPCIIFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVVIIA 301

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++   +PD   + +I  +H  ++ LA DV+L+ +      
Sbjct:   302 ATNRPDVLDPALLRPGRFDRQVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPG 361

Query:   121 LSGADI 126
              SGAD+
Sbjct:   362 FSGADL 367


>TIGR_CMR|APH_1179 [details] [associations]
            symbol:APH_1179 "ATP-dependent metalloprotease FtsH"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 GO:GO:0000910 EMBL:CP000235
            GenomeReviews:CP000235_GR GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
            SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
            PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
            Uniprot:Q2GIT4
        Length = 611

 Score = 281 (104.0 bits), Expect = 8.5e-24, P = 8.5e-24
 Identities = 54/126 (42%), Positives = 81/126 (64%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F   ++HAP I+F+DEIDAVG  R     GG  E ++T+ +LL ++DGF+S   V +I 
Sbjct:   242 MFEQGKKHAPCIIFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVVIIA 301

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++   +PD   + +I  +H  ++ LA DV+L+ +      
Sbjct:   302 ATNRPDVLDPALLRPGRFDRQVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPG 361

Query:   121 LSGADI 126
              SGAD+
Sbjct:   362 FSGADL 367


>UNIPROTKB|Q8NB90 [details] [associations]
            symbol:SPATA5 "Spermatogenesis-associated protein 5"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            GO:GO:0007275 GO:GO:0005739 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030154 GO:GO:0007283 HSSP:Q01853 eggNOG:COG0464
            HOGENOM:HOG000223225 KO:K14575 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 EMBL:AC021205
            EMBL:AF361489 EMBL:AF479656 EMBL:AK091384 EMBL:AC026402
            EMBL:AC097492 EMBL:AC109357 EMBL:BC048217 IPI:IPI00329583
            IPI:IPI00890715 IPI:IPI00890727 RefSeq:NP_660208.2
            UniGene:Hs.709648 ProteinModelPortal:Q8NB90 SMR:Q8NB90
            IntAct:Q8NB90 STRING:Q8NB90 PhosphoSite:Q8NB90 DMDM:308153554
            PaxDb:Q8NB90 PRIDE:Q8NB90 DNASU:166378 Ensembl:ENST00000274008
            GeneID:166378 KEGG:hsa:166378 UCSC:uc003iey.3 UCSC:uc003iez.4
            CTD:166378 GeneCards:GC04P123844 H-InvDB:HIX0022056 HGNC:HGNC:18119
            HPA:HPA036451 MIM:613940 neXtProt:NX_Q8NB90 PharmGKB:PA38294
            HOVERGEN:HBG108504 InParanoid:Q8NB90 OMA:NDIRPSA OrthoDB:EOG43FGWF
            PhylomeDB:Q8NB90 GenomeRNAi:166378 NextBio:88589 Bgee:Q8NB90
            CleanEx:HS_SPATA5 Genevestigator:Q8NB90 Uniprot:Q8NB90
        Length = 893

 Score = 283 (104.7 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 58/129 (44%), Positives = 82/129 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             FR A   APSI+F DE+DA+  +R  S+ G      R + +LL ++DG +   DV ++ A
Sbjct:   713 FRKARAVAPSIIFFDELDALAVER-GSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILAA 771

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR + +D AL+RPGRIDR I  PLPD  T+R IF +    M ++ +V+L ELI+  D  
Sbjct:   772 TNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELILQTDAY 831

Query:   122 SGADIKAIC 130
             SGA+I A+C
Sbjct:   832 SGAEIVAVC 840

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 46/131 (35%), Positives = 72/131 (54%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A    PSI+FIDE+DA+  KR  + +  E+ +  ++L L++ +    S G V V+ 
Sbjct:   438 IFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLG 497

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT-LAEDVNLQELIMAKD 119
             ATNR   LD AL RPGR D++IE  +P+ + +  I      R+  L  +  L +L  +  
Sbjct:   498 ATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAH 557

Query:   120 DLSGADIKAIC 130
                GAD+K +C
Sbjct:   558 GYVGADLKVLC 568


>TIGR_CMR|CBU_1352 [details] [associations]
            symbol:CBU_1352 "ATP-dependent metalloprotease FtsH"
            species:227377 "Coxiella burnetii RSA 493" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HSSP:P28691 HOGENOM:HOG000217276 KO:K03798
            MEROPS:M41.001 OMA:RSIIDQC RefSeq:NP_820341.1
            ProteinModelPortal:Q83BY5 SMR:Q83BY5 PRIDE:Q83BY5 GeneID:1209258
            KEGG:cbu:CBU_1352 PATRIC:17931447 ProtClustDB:CLSK914722
            BioCyc:CBUR227377:GJ7S-1342-MONOMER Uniprot:Q83BY5
        Length = 647

 Score = 279 (103.3 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 56/129 (43%), Positives = 82/129 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A++ AP I+FIDEIDAVG  R     GG  E ++T+ +LL ++DGF+ +  + V+ 
Sbjct:   240 MFDQAKKQAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGKEGIIVMA 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++  PLPD K +  I  +H +++ LA+DV    +      
Sbjct:   300 ATNRPDVLDPALLRPGRFDRQVVVPLPDIKGREYILKVHMNKLPLAKDVKASVIARGTPG 359

Query:   121 LSGADIKAI 129
              SGAD+  I
Sbjct:   360 FSGADLANI 368


>FB|FBgn0036702 [details] [associations]
            symbol:CG6512 species:7227 "Drosophila melanogaster"
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
            "endoplasmic reticulum" evidence=ISS] [GO:0005739 "mitochondrion"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046331
            "lateral inhibition" evidence=IMP] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AE014296
            GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0030163 GO:GO:0046331
            GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
            OMA:YSEDTAM HSSP:Q9LCZ4 UniGene:Dm.986 GeneID:39922
            KEGG:dme:Dmel_CG6512 FlyBase:FBgn0036702 GenomeRNAi:39922
            NextBio:816090 EMBL:AY084199 RefSeq:NP_730248.2 SMR:Q8T4G5
            IntAct:Q8T4G5 MINT:MINT-1004758 STRING:Q8T4G5
            EnsemblMetazoa:FBtr0075251 UCSC:CG6512-RA InParanoid:Q8T4G5
            Uniprot:Q8T4G5
        Length = 826

 Score = 279 (103.3 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 59/132 (44%), Positives = 82/132 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F +A +HAP I+FIDEIDAVG KR     GG  E + T+ +LL ++DGF++  +V V+ 
Sbjct:   412 MFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 471

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK-- 118
             ATNR++ LD AL+RPGR DR+I  P PD K +  IF +H   +  + D N     MA   
Sbjct:   472 ATNRVDILDKALMRPGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKMAALT 531

Query:   119 DDLSGADIKAIC 130
                +GADI  +C
Sbjct:   532 PGFTGADIANVC 543


>GENEDB_PFALCIPARUM|PFF0940c [details] [associations]
            symbol:PFF0940c "cell division cycle protein 48
            homologue, putative" species:5833 "Plasmodium falciparum"
            [GO:0051726 "regulation of cell cycle" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
            ProteinModelPortal:C6KT34 PRIDE:C6KT34
            EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
            EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
            Uniprot:C6KT34
        Length = 828

 Score = 278 (102.9 bits), Expect = 3.5e-23, P = 3.5e-23
 Identities = 60/130 (46%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE+++P+I+FIDEID++  KR  +N  GE E +R + +LL  +DG  SRG V VI A
Sbjct:   293 FEEAEKNSPAIIFIDEIDSIAPKREKTN--GEVE-RRVVSQLLTLMDGIKSRGQVVVIAA 349

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+I+  +PD+  +  I  IHT  M L+ DV L+EL       
Sbjct:   350 TNRQNSIDPALRRFGRFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVKLEELASNTHGF 409

Query:   122 SGADIKAICT 131
              GAD+  +CT
Sbjct:   410 VGADLAQLCT 419

 Score = 217 (81.4 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 49/130 (37%), Positives = 72/130 (55%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A   AP ++F DE+D++GT+R  S   G     R M +LL ++DG   + ++  I 
Sbjct:   565 VFDKARAAAPCVLFFDELDSIGTQRGSSLGDGSGAGDRVMNQLLTEIDGVGPKKNLFFIG 624

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR E LD AL+RPGR+D+ I  PLPD   +  I      +  +AE+V +  L      
Sbjct:   625 ATNRPELLDEALLRPGRLDQLIYIPLPDLGARISILTAILRKCPVAENVPIDFLAQKTAG 684

Query:   121 LSGADIKAIC 130
              SGAD+  +C
Sbjct:   685 FSGADLAELC 694


>UNIPROTKB|C6KT34 [details] [associations]
            symbol:PFF0940c "Cell division cycle protein 48 homologue,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0051726
            "regulation of cell cycle" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
            ProteinModelPortal:C6KT34 PRIDE:C6KT34
            EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
            EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
            Uniprot:C6KT34
        Length = 828

 Score = 278 (102.9 bits), Expect = 3.5e-23, P = 3.5e-23
 Identities = 60/130 (46%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE+++P+I+FIDEID++  KR  +N  GE E +R + +LL  +DG  SRG V VI A
Sbjct:   293 FEEAEKNSPAIIFIDEIDSIAPKREKTN--GEVE-RRVVSQLLTLMDGIKSRGQVVVIAA 349

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+I+  +PD+  +  I  IHT  M L+ DV L+EL       
Sbjct:   350 TNRQNSIDPALRRFGRFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVKLEELASNTHGF 409

Query:   122 SGADIKAICT 131
              GAD+  +CT
Sbjct:   410 VGADLAQLCT 419

 Score = 217 (81.4 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 49/130 (37%), Positives = 72/130 (55%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A   AP ++F DE+D++GT+R  S   G     R M +LL ++DG   + ++  I 
Sbjct:   565 VFDKARAAAPCVLFFDELDSIGTQRGSSLGDGSGAGDRVMNQLLTEIDGVGPKKNLFFIG 624

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR E LD AL+RPGR+D+ I  PLPD   +  I      +  +AE+V +  L      
Sbjct:   625 ATNRPELLDEALLRPGRLDQLIYIPLPDLGARISILTAILRKCPVAENVPIDFLAQKTAG 684

Query:   121 LSGADIKAIC 130
              SGAD+  +C
Sbjct:   685 FSGADLAELC 694


>TAIR|locus:2052806 [details] [associations]
            symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
            process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
            evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=RCA;TAS]
            [GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
            process" evidence=IDA] [GO:0072593 "reactive oxygen species
            metabolic process" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
            catabolic process" evidence=RCA] [GO:0042793 "transcription from
            plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] [GO:0010206
            "photosystem II repair" evidence=IMP] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
            GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
            GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
            GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
            GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
            EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
            UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
            ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
            MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
            ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
            KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
            OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
            Genevestigator:O80860 Uniprot:O80860
        Length = 695

 Score = 276 (102.2 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 55/126 (43%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A+E+AP IVF+DEIDAVG +R     GG  E ++T+ +LL ++DGF+    V V+ 
Sbjct:   311 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVA 370

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++   +PD K +  I  +H        DV+L+ + M    
Sbjct:   371 ATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPG 430

Query:   121 LSGADI 126
              SGAD+
Sbjct:   431 FSGADL 436


>TAIR|locus:2085064 [details] [associations]
            symbol:CDC48 "cell division cycle 48" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
            "spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
            [GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
            tube growth" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
            glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
            GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
            GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
            GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
            GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
            EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
            UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
            SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
            ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
            KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
            HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
            PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
            GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            Uniprot:P54609
        Length = 809

 Score = 276 (102.2 bits), Expect = 5.4e-23, P = 5.4e-23
 Identities = 61/130 (46%), Positives = 84/130 (64%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++APSI+FIDEID++  KR  +N  GE E +R + +LL  +DG  SR  V V+ A
Sbjct:   293 FEEAEKNAPSIIFIDEIDSIAPKREKTN--GEVE-RRIVSQLLTLMDGLKSRAHVIVMGA 349

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+I+  +PDE  +  +  IHT  M LAEDV+L+ +       
Sbjct:   350 TNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGY 409

Query:   122 SGADIKAICT 131
              GAD+ A+CT
Sbjct:   410 VGADLAALCT 419

 Score = 244 (91.0 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 50/131 (38%), Positives = 79/131 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
             +F  A + AP ++F DE+D++ T+R   + G G     R + +LL ++DG +++  V +I
Sbjct:   565 IFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFII 624

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
              ATNR + +D AL+RPGR+D+ I  PLPDE ++  IF     +  +A+DV++  L     
Sbjct:   625 GATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQ 684

Query:   120 DLSGADIKAIC 130
               SGADI  IC
Sbjct:   685 GFSGADITEIC 695


>TAIR|locus:2831844 [details] [associations]
            symbol:AtCDC48C "cell division cycle 48C" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
            GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
            IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
            SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
            EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
            GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
            PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
            Uniprot:Q9LZF6
        Length = 810

 Score = 276 (102.2 bits), Expect = 5.4e-23, P = 5.4e-23
 Identities = 61/130 (46%), Positives = 84/130 (64%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++APSI+FIDEID++  KR  +N  GE E +R + +LL  +DG  SR  V V+ A
Sbjct:   293 FEEAEKNAPSIIFIDEIDSIAPKREKTN--GEVE-RRIVSQLLTLMDGLKSRAHVIVMGA 349

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+I+  +PDE  +  +  IHT  M LAEDV+L+ +       
Sbjct:   350 TNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGY 409

Query:   122 SGADIKAICT 131
              GAD+ A+CT
Sbjct:   410 VGADLAALCT 419

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 51/132 (38%), Positives = 83/132 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +F  A + AP ++F DE+D++ T+R +S  ++GG  +  R + +LL ++DG +++  V +
Sbjct:   565 IFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAAD--RVLNQLLTEMDGMNAKKTVFI 622

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR + +D AL+RPGR+D+ I  PLPDE ++  IF     +  +A+DV++  L    
Sbjct:   623 IGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYT 682

Query:   119 DDLSGADIKAIC 130
                SGADI  IC
Sbjct:   683 QGFSGADITEIC 694


>UNIPROTKB|Q2GFA1 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000236
            GenomeReviews:CP000236_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST
            MEROPS:M41.001 ProtClustDB:CLSK749654 RefSeq:YP_507882.1
            ProteinModelPortal:Q2GFA1 SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708
            KEGG:ech:ECH_1098 PATRIC:20577534
            BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
        Length = 610

 Score = 272 (100.8 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 53/126 (42%), Positives = 80/126 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F   +++AP I+FIDEIDAVG  R     GG  E ++T+ +LL ++DGF+S   V +I 
Sbjct:   240 MFEQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIIA 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++   +PD   + +I N+H  ++  A DVN++ +      
Sbjct:   300 ATNRPDVLDSALLRPGRFDRQVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARGTPG 359

Query:   121 LSGADI 126
              SGAD+
Sbjct:   360 FSGADL 365


>TIGR_CMR|ECH_1098 [details] [associations]
            symbol:ECH_1098 "ATP-dependent metalloprotease FtsH"
            species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 GO:GO:0000910
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_507882.1 ProteinModelPortal:Q2GFA1
            SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708 KEGG:ech:ECH_1098
            PATRIC:20577534 BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
        Length = 610

 Score = 272 (100.8 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 53/126 (42%), Positives = 80/126 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F   +++AP I+FIDEIDAVG  R     GG  E ++T+ +LL ++DGF+S   V +I 
Sbjct:   240 MFEQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIIA 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++   +PD   + +I N+H  ++  A DVN++ +      
Sbjct:   300 ATNRPDVLDSALLRPGRFDRQVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARGTPG 359

Query:   121 LSGADI 126
              SGAD+
Sbjct:   360 FSGADL 365


>TIGR_CMR|DET_0391 [details] [associations]
            symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
            RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
            STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
            ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
            Uniprot:Q3Z9G3
        Length = 608

 Score = 271 (100.5 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 58/126 (46%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+++AP I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGFD+   V VI 
Sbjct:   243 LFDQAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQILVEMDGFDTDTSVIVIA 302

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++    PD   +  I  IH     LA+ VNL+ L      
Sbjct:   303 ATNRPDILDPALLRPGRFDRRVVLDKPDITGREAILKIHAKGKPLADTVNLENLAKQTVG 362

Query:   121 LSGADI 126
              SGAD+
Sbjct:   363 FSGADL 368


>TAIR|locus:2009235 [details] [associations]
            symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
            "metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
            II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
            eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
            GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
            ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
            EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
            ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
            PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
            GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
            InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
            Genevestigator:Q8W585 Uniprot:Q8W585
        Length = 685

 Score = 272 (100.8 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A+E+AP IVF+DEIDAVG +R     GG  E ++T+ +LL ++DGF+    V V+ 
Sbjct:   304 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVA 363

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++   +PD K +  I  +H+        V+L+ + M    
Sbjct:   364 ATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPG 423

Query:   121 LSGADI 126
              SGAD+
Sbjct:   424 FSGADL 429


>TIGR_CMR|CPS_3452 [details] [associations]
            symbol:CPS_3452 "ATP-dependent metalloprotease FtsH"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 EMBL:CP000083 GenomeReviews:CP000083_GR
            GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 OMA:RSIIDQC
            RefSeq:YP_270126.1 ProteinModelPortal:Q47YJ4 SMR:Q47YJ4
            STRING:Q47YJ4 GeneID:3519317 KEGG:cps:CPS_3452 PATRIC:21469851
            BioCyc:CPSY167879:GI48-3480-MONOMER Uniprot:Q47YJ4
        Length = 660

 Score = 269 (99.8 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 53/126 (42%), Positives = 80/126 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A++ AP I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGF+    V VI 
Sbjct:   238 MFEQAKKAAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQMLVEMDGFEGNEGVIVIA 297

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++   LPD + + +I  +H  ++ L +DV  + +      
Sbjct:   298 ATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREQILKVHMRKVPLGDDVKAEVIARGTPG 357

Query:   121 LSGADI 126
              SGAD+
Sbjct:   358 FSGADL 363


>UNIPROTKB|Q9Y4W6 [details] [associations]
            symbol:AFG3L2 "AFG3-like protein 2" species:9606 "Homo
            sapiens" [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
            "cell death" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0007528
            "neuromuscular junction development" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0021675 "nerve
            development" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0040014 "regulation of multicellular
            organism growth" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
            "righting reflex" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0051082 "unfolded protein binding" evidence=TAS]
            [GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
            GO:GO:0008219 DrugBank:DB00171 GO:GO:0007528 GO:GO:0051082
            GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
            GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 eggNOG:COG0465
            HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            CTD:10939 GO:GO:0021675 GO:GO:0060013 EMBL:Y18314 EMBL:BC065016
            IPI:IPI00001091 RefSeq:NP_006787.2 UniGene:Hs.726355 PDB:2LNA
            PDBsum:2LNA ProteinModelPortal:Q9Y4W6 SMR:Q9Y4W6 IntAct:Q9Y4W6
            MINT:MINT-1161944 STRING:Q9Y4W6 MEROPS:M41.007 PhosphoSite:Q9Y4W6
            DMDM:126302516 PaxDb:Q9Y4W6 PeptideAtlas:Q9Y4W6 PRIDE:Q9Y4W6
            Ensembl:ENST00000269143 GeneID:10939 KEGG:hsa:10939 UCSC:uc002kqz.2
            GeneCards:GC18M012328 H-InvDB:HIX0027367 HGNC:HGNC:315
            HPA:HPA004479 HPA:HPA004480 MIM:604581 MIM:610246 MIM:614487
            neXtProt:NX_Q9Y4W6 Orphanet:101109 PharmGKB:PA24612
            InParanoid:Q9Y4W6 PhylomeDB:Q9Y4W6 GenomeRNAi:10939 NextBio:41551
            ArrayExpress:Q9Y4W6 Bgee:Q9Y4W6 CleanEx:HS_AFG3L2
            Genevestigator:Q9Y4W6 GermOnline:ENSG00000141385 Uniprot:Q9Y4W6
        Length = 797

 Score = 270 (100.1 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 58/134 (43%), Positives = 84/134 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   392 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 451

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIM 116
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   +    TL +D   ++L  
Sbjct:   452 GTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLAS 511

Query:   117 AKDDLSGADIKAIC 130
                  SGAD+  +C
Sbjct:   512 LTPGFSGADVANVC 525


>GENEDB_PFALCIPARUM|PF14_0616 [details] [associations]
            symbol:PF14_0616 "i-AAA protease, putative"
            species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
            EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
            ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
            EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
            EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
            Uniprot:Q8IKI9
        Length = 706

 Score = 269 (99.8 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 57/129 (44%), Positives = 87/129 (67%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A++HAP IVFIDEIDAVG+KR   +S     ++ T+ +LL +LDGF+    + VI 
Sbjct:   338 LFQAAKKHAPCIVFIDEIDAVGSKR---SSRDNSAVRMTLNQLLVELDGFEQNEGIVVIC 394

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATN  ++LD AL+RPGR+D+ I  PLPD K +  I  ++++++ L++DV+L  L      
Sbjct:   395 ATNFPQSLDKALVRPGRLDKTIVVPLPDIKGRYEILKMYSNKIVLSKDVDLHVLSRRTVG 454

Query:   121 LSGADIKAI 129
             ++GAD+  I
Sbjct:   455 MTGADLNNI 463


>UNIPROTKB|Q8IKI9 [details] [associations]
            symbol:PF14_0616 "ATP-dependent protease la, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
            EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
            ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
            EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
            EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
            Uniprot:Q8IKI9
        Length = 706

 Score = 269 (99.8 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 57/129 (44%), Positives = 87/129 (67%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A++HAP IVFIDEIDAVG+KR   +S     ++ T+ +LL +LDGF+    + VI 
Sbjct:   338 LFQAAKKHAPCIVFIDEIDAVGSKR---SSRDNSAVRMTLNQLLVELDGFEQNEGIVVIC 394

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATN  ++LD AL+RPGR+D+ I  PLPD K +  I  ++++++ L++DV+L  L      
Sbjct:   395 ATNFPQSLDKALVRPGRLDKTIVVPLPDIKGRYEILKMYSNKIVLSKDVDLHVLSRRTVG 454

Query:   121 LSGADIKAI 129
             ++GAD+  I
Sbjct:   455 MTGADLNNI 463


>UNIPROTKB|F1N9N5 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
            OMA:LYRFVTT EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
            IPI:IPI00683486 Ensembl:ENSGALT00000016639 ArrayExpress:F1N9N5
            Uniprot:F1N9N5
        Length = 635

 Score = 268 (99.4 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 59/134 (44%), Positives = 85/134 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   236 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 295

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---TLAEDVNL-QELIM 116
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   +   T+ +  NL ++L  
Sbjct:   296 GTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKLDTVLDKDNLARKLAS 355

Query:   117 AKDDLSGADIKAIC 130
                  SGADI  +C
Sbjct:   356 LTPGFSGADIANVC 369


>UNIPROTKB|P37476 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0008233 "peptidase activity" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IDA] [GO:0030428 "cell septum"
            evidence=IDA] [GO:0043934 "sporulation" evidence=IMP]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0006950 GO:GO:0051301 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0007049
            GO:GO:0030163 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0043934
            eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0008233
            GO:GO:0030428 EMBL:D26185 HOGENOM:HOG000217276 KO:K03798 PIR:E69627
            RefSeq:NP_387950.1 ProteinModelPortal:P37476 SMR:P37476
            IntAct:P37476 MEROPS:M41.009 EnsemblBacteria:EBBACT00000001428
            GeneID:938094 KEGG:bsu:BSU00690 PATRIC:18971613 GenoList:BSU00690
            OMA:ENMSYST ProtClustDB:CLSK886567 BioCyc:BSUB:BSU00690-MONOMER
            Uniprot:P37476
        Length = 637

 Score = 268 (99.4 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 54/127 (42%), Positives = 79/127 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+++AP ++FIDEIDAVG +R     GG  E ++T+ +LL ++DGF +   + +I 
Sbjct:   245 LFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIA 304

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR+I    PD   +  +  +H     L E VNL+ + M    
Sbjct:   305 ATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPG 364

Query:   121 LSGADIK 127
              SGAD++
Sbjct:   365 FSGADLE 371


>TAIR|locus:2101933 [details] [associations]
            symbol:AtCDC48B "AT3G53230" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005794 GO:GO:0046686 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0005730 GO:GO:0051301
            GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0045732 GO:GO:0009524 EMBL:AL132958 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK228801 IPI:IPI00520856 PIR:T46169
            RefSeq:NP_190891.1 UniGene:At.23168 ProteinModelPortal:Q9SCN8
            SMR:Q9SCN8 STRING:Q9SCN8 PaxDb:Q9SCN8 PRIDE:Q9SCN8
            EnsemblPlants:AT3G53230.1 GeneID:824489 KEGG:ath:AT3G53230
            GeneFarm:1909 TAIR:At3g53230 InParanoid:Q9SCN8 OMA:DIRRYEE
            PhylomeDB:Q9SCN8 Genevestigator:Q9SCN8 GermOnline:AT3G53230
            Uniprot:Q9SCN8
        Length = 815

 Score = 270 (100.1 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 60/130 (46%), Positives = 84/130 (64%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++APSI+FIDEID++  KR  ++  GE E +R + +LL  +DG  SR  V V+ A
Sbjct:   294 FEEAEKNAPSIIFIDEIDSIAPKREKTH--GEVE-RRIVSQLLTLMDGLKSRAHVIVMGA 350

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+I+  +PDE  +  +  IHT  M LAEDV+L+ +       
Sbjct:   351 TNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGY 410

Query:   122 SGADIKAICT 131
              GAD+ A+CT
Sbjct:   411 VGADLAALCT 420

 Score = 257 (95.5 bits), Expect = 6.0e-21, P = 6.0e-21
 Identities = 53/132 (40%), Positives = 87/132 (65%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +F  A + AP ++F DE+D++ T+R +S  ++GG  +  R + +LL ++DG +++  V +
Sbjct:   566 IFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAAD--RVLNQLLTEMDGMNAKKTVFI 623

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR + +DPAL+RPGR+D+ I  PLPDE+++ +IF     +  +A+DV+L+ L    
Sbjct:   624 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYT 683

Query:   119 DDLSGADIKAIC 130
                SGADI  IC
Sbjct:   684 QGFSGADITEIC 695


>CGD|CAL0000732 [details] [associations]
            symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
            evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
            [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
            AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
            ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
            evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:1900182 "positive regulation of protein
            localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IEA] [GO:0071630
            "nucleus-associated proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
            disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
            membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IEA] [GO:0072671
            "mitochondria-associated protein catabolic process" evidence=IEA]
            [GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
            endoplasmic reticulum localization involved in endoplasmic
            reticulum polarization at cell division site" evidence=IEA]
            [GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
            surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 270 (100.1 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 57/130 (43%), Positives = 85/130 (65%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE+++PSI+FIDEID++  KR  +N  GE E +R + +LL  +DG  +R +V VI A
Sbjct:   301 FEEAEKNSPSIIFIDEIDSIAPKRDKTN--GEVE-RRVVSQLLTLMDGMKARSNVVVIAA 357

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD + +  I  IHT  M LA+DV+L+ +       
Sbjct:   358 TNRPNSIDPALRRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIASETHGF 417

Query:   122 SGADIKAICT 131
              GADI ++C+
Sbjct:   418 VGADIASLCS 427

 Score = 221 (82.9 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 47/129 (36%), Positives = 73/129 (56%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A   AP++VF+DE+D++   R  S+        R + +LL ++DG +++ +V VI 
Sbjct:   573 IFDKARAAAPTVVFLDELDSIAKARGGSHGDAGGASDRVVNQLLTEMDGMNAKKNVFVIG 632

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPAL+RPGR+D+ I  PLPDE  +  I         L   ++L E+      
Sbjct:   633 ATNRPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKITHG 692

Query:   121 LSGADIKAI 129
              SGAD+  I
Sbjct:   693 FSGADLSYI 701


>UNIPROTKB|Q59WG3 [details] [associations]
            symbol:CDC48 "Putative uncharacterized protein CDC48"
            species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 270 (100.1 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 57/130 (43%), Positives = 85/130 (65%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE+++PSI+FIDEID++  KR  +N  GE E +R + +LL  +DG  +R +V VI A
Sbjct:   301 FEEAEKNSPSIIFIDEIDSIAPKRDKTN--GEVE-RRVVSQLLTLMDGMKARSNVVVIAA 357

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD + +  I  IHT  M LA+DV+L+ +       
Sbjct:   358 TNRPNSIDPALRRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIASETHGF 417

Query:   122 SGADIKAICT 131
              GADI ++C+
Sbjct:   418 VGADIASLCS 427

 Score = 221 (82.9 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 47/129 (36%), Positives = 73/129 (56%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A   AP++VF+DE+D++   R  S+        R + +LL ++DG +++ +V VI 
Sbjct:   573 IFDKARAAAPTVVFLDELDSIAKARGGSHGDAGGASDRVVNQLLTEMDGMNAKKNVFVIG 632

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPAL+RPGR+D+ I  PLPDE  +  I         L   ++L E+      
Sbjct:   633 ATNRPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKITHG 692

Query:   121 LSGADIKAI 129
              SGAD+  I
Sbjct:   693 FSGADLSYI 701


>TAIR|locus:2094892 [details] [associations]
            symbol:EMB2083 "embryo defective 2083" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004176 "ATP-dependent peptidase activity"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0004252 "serine-type endopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0009793 "embryo development ending in seed dormancy"
            evidence=NAS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0000023 "maltose metabolic process"
            evidence=RCA] [GO:0010304 "PSII associated light-harvesting complex
            II catabolic process" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
            SMART:SM00382 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AB023046
            eggNOG:COG0465 GO:GO:0017111 IPI:IPI00526963 RefSeq:NP_566541.1
            UniGene:At.38918 ProteinModelPortal:A8MPR5 SMR:A8MPR5 STRING:A8MPR5
            PaxDb:A8MPR5 PRIDE:A8MPR5 EnsemblPlants:AT3G16290.1 GeneID:820876
            KEGG:ath:AT3G16290 TAIR:At3g16290 HOGENOM:HOG000015086
            InParanoid:A8MPR5 OMA:FFTHGEM PhylomeDB:A8MPR5
            ProtClustDB:CLSN2688442 Genevestigator:A8MPR5 Uniprot:A8MPR5
        Length = 876

 Score = 270 (100.1 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 56/129 (43%), Positives = 80/129 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             L++ A E+APS+VFIDE+DAVG +R      G +E   T+ +LL  LDGF+ RG+V  I 
Sbjct:   494 LYQEARENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVSLDGFEGRGEVITIA 553

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             +TNR + LDPAL+RPGR DRKI  P P    +  I  +H  +  +AED++   +    D 
Sbjct:   554 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDG 613

Query:   121 LSGADIKAI 129
             + GA++  I
Sbjct:   614 MVGAELANI 622


>UNIPROTKB|Q3AFJ8 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
            ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
            GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
            BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
        Length = 619

 Score = 267 (99.0 bits), Expect = 2.9e-22, P = 2.9e-22
 Identities = 56/126 (44%), Positives = 78/126 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+++AP IVFIDEIDAVG +R     GG  E ++T+ +LL ++DGF+S   + +I 
Sbjct:   242 LFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNEGIIIIA 301

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR I    PD   ++ I  +H     L +DV+L  L      
Sbjct:   302 ATNRPDILDPALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPG 361

Query:   121 LSGADI 126
              +GAD+
Sbjct:   362 FTGADL 367


>TIGR_CMR|CHY_0214 [details] [associations]
            symbol:CHY_0214 "cell division protein FtsH"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
            RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
            STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
            PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
            Uniprot:Q3AFJ8
        Length = 619

 Score = 267 (99.0 bits), Expect = 2.9e-22, P = 2.9e-22
 Identities = 56/126 (44%), Positives = 78/126 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+++AP IVFIDEIDAVG +R     GG  E ++T+ +LL ++DGF+S   + +I 
Sbjct:   242 LFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNEGIIIIA 301

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR I    PD   ++ I  +H     L +DV+L  L      
Sbjct:   302 ATNRPDILDPALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPG 361

Query:   121 LSGADI 126
              +GAD+
Sbjct:   362 FTGADL 367


>FB|FBgn0032450 [details] [associations]
            symbol:CG5776 species:7227 "Drosophila melanogaster"
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
            "endoplasmic reticulum" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014134 GO:GO:0006200 GO:GO:0016887 HSSP:Q01853
            eggNOG:COG0464 KO:K14575 GeneTree:ENSGT00700000104502 OMA:MLLRCVA
            EMBL:AY051725 RefSeq:NP_609585.1 UniGene:Dm.8715 SMR:Q9VK63
            EnsemblMetazoa:FBtr0080407 EnsemblMetazoa:FBtr0329925 GeneID:34680
            KEGG:dme:Dmel_CG5776 UCSC:CG5776-RA FlyBase:FBgn0032450
            InParanoid:Q9VK63 OrthoDB:EOG4547DV GenomeRNAi:34680 NextBio:789659
            Uniprot:Q9VK63
        Length = 799

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 54/132 (40%), Positives = 86/132 (65%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRY--DSNSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +FR A + AP+IVF DEIDA+G +R   D +S G    +R + +LL +LDG ++  +V +
Sbjct:   620 VFRKARQVAPAIVFFDEIDAIGGERSEGDGSSSGSSVKERVLTQLLTELDGVEALQNVTI 679

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             + ATNR + +D AL+RPGRIDR +   LP  + +R I  I    M ++ DV++++L+   
Sbjct:   680 VAATNRPDMIDKALLRPGRIDRILYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQLT 739

Query:   119 DDLSGADIKAIC 130
             +  SGA+I+A+C
Sbjct:   740 EGYSGAEIQAVC 751

 Score = 101 (40.6 bits), Expect = 0.00029, P = 0.00029
 Identities = 27/99 (27%), Positives = 52/99 (52%)

Query:     1 LFRVAEEHAP--SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVK 57
             +F  A  H P  +++ I+++  +  K+   NS   + +    L LL+QL      +G   
Sbjct:   361 IFERAYNHYPHPTLLLIEDVHNLCPKQ--ENSDLVKRVSLAFLSLLDQLSSPSQLKGSKT 418

Query:    58 VIMATN-RIETLDPALIRPGRIDRKIEFPLPDEKTKRRI 95
              ++AT+ +I+TL P++ R GR+D ++E   P  + +  I
Sbjct:   419 FVLATSSQIDTLHPSIRRAGRLDNEVELGAPSSQARLEI 457


>UNIPROTKB|Q5LNU8 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
            ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
            KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
            Uniprot:Q5LNU8
        Length = 639

 Score = 267 (99.0 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+++AP IVFIDEIDAVG  R     GG  E ++T+ +LL ++DGF++   V ++ 
Sbjct:   240 MFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANEGVIILA 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR +    PD K + +I  +H  +  L  DV+L+ +      
Sbjct:   300 ATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARGTPG 359

Query:   121 LSGADI 126
              SGAD+
Sbjct:   360 FSGADL 365


>TIGR_CMR|SPO_3105 [details] [associations]
            symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
            ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
            KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
            Uniprot:Q5LNU8
        Length = 639

 Score = 267 (99.0 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A+++AP IVFIDEIDAVG  R     GG  E ++T+ +LL ++DGF++   V ++ 
Sbjct:   240 MFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANEGVIILA 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR +    PD K + +I  +H  +  L  DV+L+ +      
Sbjct:   300 ATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARGTPG 359

Query:   121 LSGADI 126
              SGAD+
Sbjct:   360 FSGADL 365


>UNIPROTKB|P0AAI3 [details] [associations]
            symbol:ftsH species:83333 "Escherichia coli K-12"
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
            "proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
            evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
            [GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
            "integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
            activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
            GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
            eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
            HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
            RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
            ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
            MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
            EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
            EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
            KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
            EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
            BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
            BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
            EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
        Length = 644

 Score = 267 (99.0 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 53/126 (42%), Positives = 80/126 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A++ AP I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGF+    + VI 
Sbjct:   236 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 295

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++   LPD + + +I  +H  R+ LA D++   +      
Sbjct:   296 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 355

Query:   121 LSGADI 126
              SGAD+
Sbjct:   356 FSGADL 361


>SGD|S000002284 [details] [associations]
            symbol:CDC48 "AAA ATPase involved in multiple processes"
            species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
            evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
            evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
            evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
            "cell cycle" evidence=IEA] [GO:0015031 "protein transport"
            evidence=IEA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IEA] [GO:1900182 "positive regulation of
            protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
            spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
            reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
            evidence=IMP] [GO:0071712 "ER-associated misfolded protein
            catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IMP] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
            [GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
            [GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IMP] [GO:0016236
            "macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
            biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0072671 "mitochondria-associated protein
            catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
            EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
            GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
            EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
            ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
            MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
            PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
            KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
            OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
            GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
            GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
            Uniprot:P25694
        Length = 835

 Score = 269 (99.8 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 57/130 (43%), Positives = 84/130 (64%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDEID++  KR  +N  GE E +R + +LL  +DG  +R +V VI A
Sbjct:   300 FEEAEKNAPAIIFIDEIDSIAPKRDKTN--GEVE-RRVVSQLLTLMDGMKARSNVVVIAA 356

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  +  IHT  M LA+DV+L+ L       
Sbjct:   357 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALAAETHGY 416

Query:   122 SGADIKAICT 131
              GADI ++C+
Sbjct:   417 VGADIASLCS 426

 Score = 223 (83.6 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 48/128 (37%), Positives = 77/128 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +F  A   AP++VF+DE+D++   R  S  ++GG  +  R + +LL ++DG +++ +V V
Sbjct:   572 IFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASD--RVVNQLLTEMDGMNAKKNVFV 629

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR + +DPA++RPGR+D+ I  PLPDE  +  I N    +  L   + L  +  A 
Sbjct:   630 IGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKAT 689

Query:   119 DDLSGADI 126
                SGAD+
Sbjct:   690 QGFSGADL 697


>UNIPROTKB|I3LLQ8 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
            "myelination" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0040014 "regulation of multicellular organism
            growth" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
            junction development" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0004222 "metalloendopeptidase
            activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
            GO:GO:0006508 GO:GO:0040014 GO:GO:0004222 GO:GO:0042552
            GO:GO:0007409 GO:GO:0030163 GeneTree:ENSGT00530000063070
            GO:GO:0017111 GO:GO:0042407 GO:GO:0008053 GO:GO:0034982
            TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675
            GO:GO:0060013 EMBL:FP565334 Ensembl:ENSSSCT00000025900
            Uniprot:I3LLQ8
        Length = 597

 Score = 266 (98.7 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 57/134 (42%), Positives = 84/134 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   184 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 243

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIM 116
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   +    TL ++   ++L  
Sbjct:   244 GTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLAS 303

Query:   117 AKDDLSGADIKAIC 130
                  SGAD+  +C
Sbjct:   304 LTPGFSGADVANVC 317


>UNIPROTKB|E1BZ74 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743 "mitochondrial
            inner membrane" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0007528 "neuromuscular junction development"
            evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
            [GO:0016265 "death" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0034982 "mitochondrial protein processing"
            evidence=IEA] [GO:0040014 "regulation of multicellular organism
            growth" evidence=IEA] [GO:0042407 "cristae formation" evidence=IEA]
            [GO:0042552 "myelination" evidence=IEA] [GO:0060013 "righting
            reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005524 GO:GO:0005743 GO:GO:0008270 GO:GO:0006508
            GO:GO:0040014 GO:GO:0004222 GO:GO:0030163
            GeneTree:ENSGT00530000063070 GO:GO:0017111 GO:GO:0042407
            GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 GO:GO:0016265
            GO:GO:0060013 EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
            IPI:IPI00603273 Ensembl:ENSGALT00000022474 ArrayExpress:E1BZ74
            Uniprot:E1BZ74
        Length = 805

 Score = 268 (99.4 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 59/134 (44%), Positives = 85/134 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   392 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 451

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---TLAEDVNL-QELIM 116
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   +   T+ +  NL ++L  
Sbjct:   452 GTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKLDTVLDKDNLARKLAS 511

Query:   117 AKDDLSGADIKAIC 130
                  SGADI  +C
Sbjct:   512 LTPGFSGADIANVC 525


>MGI|MGI:1928277 [details] [associations]
            symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (yeast)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IGI] [GO:0008053 "mitochondrial fusion" evidence=IGI]
            [GO:0008152 "metabolic process" evidence=ISA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0034982 "mitochondrial protein processing"
            evidence=IGI] [GO:0042407 "cristae formation" evidence=IGI]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1928277
            GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0031966
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 EMBL:AK012394 EMBL:AK159647 EMBL:AK167964
            EMBL:AK168244 EMBL:BC056978 EMBL:AF329695 IPI:IPI00468514
            IPI:IPI00652659 RefSeq:NP_473411.2 UniGene:Mm.287475
            ProteinModelPortal:Q920A7 SMR:Q920A7 IntAct:Q920A7 STRING:Q920A7
            MEROPS:M41.016 PhosphoSite:Q920A7 PaxDb:Q920A7 PRIDE:Q920A7
            Ensembl:ENSMUST00000001520 Ensembl:ENSMUST00000098320 GeneID:114896
            KEGG:mmu:114896 UCSC:uc009nwd.2 CTD:114896 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 InParanoid:Q920A7 KO:K08956 OMA:WDEKDFR
            OrthoDB:EOG4SBDXC NextBio:368917 Bgee:Q920A7 CleanEx:MM_AFG3L1
            Genevestigator:Q920A7 GermOnline:ENSMUSG00000031967 GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            Uniprot:Q920A7
        Length = 789

 Score = 267 (99.0 bits), Expect = 4.8e-22, P = 4.8e-22
 Identities = 56/134 (41%), Positives = 84/134 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F +A +HAP I+FIDEIDA+G KR   + GG+ E + T+ ++L ++DGF+S  +V V+ 
Sbjct:   384 MFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLA 443

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIM 116
              TNR + LDPAL RPGR DR+I    PD K +  IF +H   +    +L++D   ++L  
Sbjct:   444 GTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAA 503

Query:   117 AKDDLSGADIKAIC 130
                  +GADI  +C
Sbjct:   504 LTPGFTGADISNVC 517


>ZFIN|ZDB-GENE-070912-46 [details] [associations]
            symbol:afg3l2 "AFG3 ATPase family gene 3-like 2 (S.
            cerevisiae)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-070912-46 GO:GO:0016021 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
            CTD:10939 MEROPS:M41.007 EMBL:BX000484 EMBL:BC155655
            IPI:IPI00513225 RefSeq:NP_001104667.1 UniGene:Dr.82691 SMR:A9JRG9
            STRING:A9JRG9 Ensembl:ENSDART00000089834 GeneID:569168
            KEGG:dre:569168 NextBio:20889547 Uniprot:A9JRG9
        Length = 800

 Score = 267 (99.0 bits), Expect = 4.9e-22, P = 4.9e-22
 Identities = 60/134 (44%), Positives = 85/134 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V V+ 
Sbjct:   387 LFVLARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTATNVVVLA 446

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELI--MAK 118
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   + L  +++ + L   MA 
Sbjct:   447 GTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKLEAELDKEALARKMAA 506

Query:   119 --DDLSGADIKAIC 130
                  SGADI  +C
Sbjct:   507 LTPGFSGADIANVC 520


>RGD|1309722 [details] [associations]
            symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (S.
            cerevisiae)" species:10116 "Rattus norvegicus" [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0007005 "mitochondrion
            organization" evidence=ISO] [GO:0008053 "mitochondrial fusion"
            evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0034982
            "mitochondrial protein processing" evidence=ISO] [GO:0042407
            "cristae formation" evidence=ISO] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1309722
            GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            IPI:IPI00365343 Ensembl:ENSRNOT00000065957 UCSC:RGD:1309722
            ArrayExpress:F1LS61 Uniprot:F1LS61
        Length = 761

 Score = 266 (98.7 bits), Expect = 5.7e-22, P = 5.7e-22
 Identities = 57/134 (42%), Positives = 82/134 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F +A +HAP I+FIDEIDA+G KR   + GG+ E + T+ ++L ++DGF+S  +V V+ 
Sbjct:   356 MFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSTTNVVVLA 415

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE----DVNLQELIM 116
              TNR + LDPAL RPGR DR+I    PD K +  IF +H   + L E    D   ++L  
Sbjct:   416 GTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDESLTRDALSRKLAA 475

Query:   117 AKDDLSGADIKAIC 130
                  +GADI  +C
Sbjct:   476 LTPGFTGADISNVC 489


>TIGR_CMR|BA_0064 [details] [associations]
            symbol:BA_0064 "cell division protein FtsH" species:198094
            "Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
            ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
            RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
            SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
            EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
            EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
            GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
            BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
            Uniprot:Q81VX5
        Length = 633

 Score = 264 (98.0 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 53/127 (41%), Positives = 79/127 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+++AP I+FIDEIDAVG +R     GG  E ++T+ +LL ++DGF +   + +I 
Sbjct:   246 LFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIA 305

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR+I    PD   +  +  +H     L E++NL+ +      
Sbjct:   306 ATNRPDILDPALLRPGRFDRQITVDRPDVNGREAVLKVHARNKPLDENINLRAIATRTPG 365

Query:   121 LSGADIK 127
              SGAD++
Sbjct:   366 FSGADLE 372


>CGD|CAL0004443 [details] [associations]
            symbol:orf19.2057 species:5476 "Candida albicans" [GO:0005745
            "m-AAA complex" evidence=IEA] [GO:0097002 "mitochondrial inner
            boundary membrane" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
            evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 CGD:CAL0004443 GO:GO:0016021
            GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 KO:K08956 GO:GO:0017111
            TIGRFAMs:TIGR01241 EMBL:AACQ01000031 EMBL:AACQ01000030
            MEROPS:M41.003 RefSeq:XP_719505.1 RefSeq:XP_719629.1
            ProteinModelPortal:Q5AD10 SMR:Q5AD10 GeneID:3638753 GeneID:3638884
            KEGG:cal:CaO19.2057 KEGG:cal:CaO19.9604 Uniprot:Q5AD10
        Length = 846

 Score = 266 (98.7 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 56/134 (41%), Positives = 83/134 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTML-ELLNQLDGFDSRGDVKVI 59
             LF+ A E+APSIVF+DEIDA+G +R   N+ G  + + T L +LL ++DGFD+   V V+
Sbjct:   457 LFKTARENAPSIVFVDEIDAIGKQRSKGNATGANDERETTLNQLLVEMDGFDTSDHVVVL 516

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQ---ELIM 116
               TNR + LD AL+RPGR DR +    P+   ++ IF++H  ++TL +D++      L  
Sbjct:   517 AGTNRPDILDRALMRPGRFDRHVHIDNPELLGRKEIFDVHLQKITLQKDIDPDLSGRLAA 576

Query:   117 AKDDLSGADIKAIC 130
                  SGADI  +C
Sbjct:   577 LTPGFSGADIANVC 590


>UNIPROTKB|Q55700 [details] [associations]
            symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
            species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
            [GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
            "thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
            EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
            HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
            RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
            IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
            GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
            OMA:NTASTRM Uniprot:Q55700
        Length = 627

 Score = 263 (97.6 bits), Expect = 8.1e-22, P = 8.1e-22
 Identities = 51/126 (40%), Positives = 78/126 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A+E+AP ++FIDEIDAVG +R     GG  E ++T+ +LL ++DGF+    + +I 
Sbjct:   256 LFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIA 315

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++    PD   ++ I  +H     LA +V++  +      
Sbjct:   316 ATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPG 375

Query:   121 LSGADI 126
              SGAD+
Sbjct:   376 FSGADL 381


>MGI|MGI:1916847 [details] [associations]
            symbol:Afg3l2 "AFG3(ATPase family gene 3)-like 2 (yeast)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
            membrane" evidence=IDA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0007005 "mitochondrion organization" evidence=IGI] [GO:0007409
            "axonogenesis" evidence=IMP] [GO:0007528 "neuromuscular junction
            development" evidence=IMP] [GO:0008053 "mitochondrial fusion"
            evidence=IGI] [GO:0008233 "peptidase activity" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016265 "death" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0021675 "nerve development" evidence=IMP]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0034982
            "mitochondrial protein processing" evidence=IGI] [GO:0040014
            "regulation of multicellular organism growth" evidence=IMP]
            [GO:0042407 "cristae formation" evidence=IGI] [GO:0042552
            "myelination" evidence=IMP] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IMP]
            [GO:0060013 "righting reflex" evidence=IMP] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1916847
            GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
            GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
            GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
            eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            CTD:10939 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            MEROPS:M41.007 EMBL:BC036999 EMBL:BC043056 IPI:IPI00170357
            RefSeq:NP_081406.1 UniGene:Mm.426052 ProteinModelPortal:Q8JZQ2
            SMR:Q8JZQ2 IntAct:Q8JZQ2 STRING:Q8JZQ2 PhosphoSite:Q8JZQ2
            PaxDb:Q8JZQ2 PRIDE:Q8JZQ2 Ensembl:ENSMUST00000025408 GeneID:69597
            KEGG:mmu:69597 UCSC:uc008fmf.1 InParanoid:Q8JZQ2 NextBio:329880
            Bgee:Q8JZQ2 CleanEx:MM_AFG3L2 Genevestigator:Q8JZQ2
            GermOnline:ENSMUSG00000024527 Uniprot:Q8JZQ2
        Length = 802

 Score = 265 (98.3 bits), Expect = 8.1e-22, P = 8.1e-22
 Identities = 57/134 (42%), Positives = 83/134 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   391 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 450

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIM 116
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   +     L +D   ++L  
Sbjct:   451 GTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLAS 510

Query:   117 AKDDLSGADIKAIC 130
                  SGAD+  +C
Sbjct:   511 LTPGFSGADVANVC 524


>UNIPROTKB|F1LN92 [details] [associations]
            symbol:Afg3l2 "Protein Afg3l2" species:10116 "Rattus
            norvegicus" [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
            "mitochondrial inner membrane" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0007528 "neuromuscular junction development"
            evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
            to membrane" evidence=IEA] [GO:0016265 "death" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0021675 "nerve development" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0040014 "regulation of multicellular
            organism growth" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
            "righting reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1305259
            GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
            GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
            GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
            GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
            GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
            OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            IPI:IPI00192903 RefSeq:NP_001128336.1 UniGene:Rn.8386
            ProteinModelPortal:F1LN92 PRIDE:F1LN92 Ensembl:ENSRNOT00000024632
            GeneID:307350 KEGG:rno:307350 NextBio:657254 ArrayExpress:F1LN92
            Uniprot:F1LN92
        Length = 802

 Score = 265 (98.3 bits), Expect = 8.1e-22, P = 8.1e-22
 Identities = 57/134 (42%), Positives = 83/134 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   391 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 450

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIM 116
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   +     L +D   ++L  
Sbjct:   451 GTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLAS 510

Query:   117 AKDDLSGADIKAIC 130
                  SGAD+  +C
Sbjct:   511 LTPGFSGADVANVC 524


>UNIPROTKB|Q2KJI7 [details] [associations]
            symbol:AFG3L2 "AFG3-like protein 2" species:9913 "Bos
            taurus" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
            "myelination" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0040014 "regulation of multicellular organism
            growth" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
            junction development" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005524 GO:GO:0005743 GO:GO:0046872 GO:GO:0007528
            GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
            GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 MEROPS:M41.016
            eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            EMBL:BC105322 IPI:IPI00686580 RefSeq:NP_001039676.1 UniGene:Bt.1657
            HSSP:Q9WZ49 ProteinModelPortal:Q2KJI7 SMR:Q2KJI7 STRING:Q2KJI7
            PRIDE:Q2KJI7 Ensembl:ENSBTAT00000031029 GeneID:515757
            KEGG:bta:515757 CTD:10939 InParanoid:Q2KJI7 OMA:LYRFVTT
            NextBio:20871990 GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            Uniprot:Q2KJI7
        Length = 805

 Score = 265 (98.3 bits), Expect = 8.2e-22, P = 8.2e-22
 Identities = 57/134 (42%), Positives = 84/134 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   393 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 452

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIM 116
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   +    TL ++   ++L  
Sbjct:   453 GTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLAS 512

Query:   117 AKDDLSGADIKAIC 130
                  SGAD+  +C
Sbjct:   513 LTPGFSGADVANVC 526


>DICTYBASE|DDB_G0282241 [details] [associations]
            symbol:DDB_G0282241 species:44689 "Dictyostelium
            discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0282241 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 EMBL:AAFI02000046 RefSeq:XP_640304.1
            ProteinModelPortal:Q54ST1 EnsemblProtists:DDB0205288 GeneID:8623480
            KEGG:ddi:DDB_G0282241 InParanoid:Q54ST1 OMA:IEMISID Uniprot:Q54ST1
        Length = 825

 Score = 264 (98.0 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 53/131 (40%), Positives = 83/131 (63%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKR-YDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 59
             +F+ A +  PSI+F DEIDA+ +KR    NS G+    R +   LN++DG +    V VI
Sbjct:   655 IFKKARQTTPSILFFDEIDAIVSKRNLSDNSSGDNAQSRVLSTFLNEMDGVEQLNGVIVI 714

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
              ATNR++ +D AL+RPGR D+ +E  LPD+ ++ +I  I T  + L+++VNL E+    +
Sbjct:   715 GATNRLDMIDNALLRPGRFDKILEIKLPDQLSRLKILKIKTKSIPLSDNVNLIEISNLTN 774

Query:   120 DLSGADIKAIC 130
               SGAD++ +C
Sbjct:   775 GFSGADLENLC 785

 Score = 185 (70.2 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 46/131 (35%), Positives = 78/131 (59%)

Query:     4 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMAT 62
             +A+ ++P +VFIDEID +   R  S     R +     + L  LDG  +R G++ +I AT
Sbjct:   381 IAKSNSPIVVFIDEIDTICPPRSKSTQNESRVVG----QFLTLLDGIGARKGNLIIIAAT 436

Query:    63 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV-NLQELIMAKDDL 121
             NR   +D AL RPGR+DR+IE P+P+++ +  I  ++ S++ ++    NL + I A + +
Sbjct:   437 NRPNQIDNALRRPGRLDREIEIPVPNKQQRLDILKLYCSKLPISPTPSNLLDQI-ADETV 495

Query:   122 S--GADIKAIC 130
                GA+I+ +C
Sbjct:   496 GYVGANIQFLC 506


>TIGR_CMR|SO_1197 [details] [associations]
            symbol:SO_1197 "ATP-dependent metalloprotease FtsH"
            species:211586 "Shewanella oneidensis MR-1" [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0051301 "cell division" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006200
            GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0030163 TIGRFAMs:TIGR01241
            HSSP:P28691 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            OMA:RSIIDQC RefSeq:NP_716822.2 ProteinModelPortal:Q8EHM2 SMR:Q8EHM2
            GeneID:1169025 KEGG:son:SO_1197 PATRIC:23522048
            ProtClustDB:CLSK906146 Uniprot:Q8EHM2
        Length = 652

 Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 52/126 (41%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A++ AP I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGF+    + VI 
Sbjct:   241 MFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 300

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++   LPD + + +I  +H  ++ L+EDV    +      
Sbjct:   301 ATNRPDVLDSALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLSEDVKASVIARGTPG 360

Query:   121 LSGADI 126
              SGAD+
Sbjct:   361 FSGADL 366


>UNIPROTKB|Q9KU86 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
            KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
            ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
            KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
            Uniprot:Q9KU86
        Length = 651

 Score = 261 (96.9 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 52/126 (41%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A++ +P I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGF+    + VI 
Sbjct:   240 MFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++   LPD + + +I  +H  ++ LA DV    +      
Sbjct:   300 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARGTPG 359

Query:   121 LSGADI 126
              SGAD+
Sbjct:   360 FSGADL 365


>TIGR_CMR|VC_0637 [details] [associations]
            symbol:VC_0637 "cell division protein FtsH" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
            evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
            HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
            RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
            DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
            ProtClustDB:CLSK874054 Uniprot:Q9KU86
        Length = 651

 Score = 261 (96.9 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 52/126 (41%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A++ +P I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGF+    + VI 
Sbjct:   240 MFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 299

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR++   LPD + + +I  +H  ++ LA DV    +      
Sbjct:   300 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARGTPG 359

Query:   121 LSGADI 126
              SGAD+
Sbjct:   360 FSGADL 365


>WB|WBGene00004978 [details] [associations]
            symbol:spg-7 species:6239 "Caenorhabditis elegans"
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
            process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0008340 "determination of adult lifespan" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0030968 "endoplasmic reticulum unfolded protein response"
            evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
            GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0008270 GO:GO:0006508
            GO:GO:0000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0030968
            EMBL:FO081580 HSSP:Q9LCZ4 RefSeq:NP_491165.2
            ProteinModelPortal:Q9N3T5 SMR:Q9N3T5 STRING:Q9N3T5 MEROPS:M41.A10
            PaxDb:Q9N3T5 EnsemblMetazoa:Y47G6A.10 GeneID:171915
            KEGG:cel:CELE_Y47G6A.10 UCSC:Y47G6A.10 CTD:171915
            WormBase:Y47G6A.10 InParanoid:Q9N3T5 NextBio:873225 Uniprot:Q9N3T5
        Length = 782

 Score = 262 (97.3 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 59/134 (44%), Positives = 83/134 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNS-GGEREIQRTMLELLNQLDGFDS-RGDVKV 58
             +F +A +++P I+FIDEIDAVG KR      GG  E + T+ +LL ++DGF +    V V
Sbjct:   377 MFSMARKNSPCILFIDEIDAVGRKRGGKGGMGGHSEQENTLNQLLVEMDGFTTDESSVIV 436

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIM 116
             I ATNR++ LD AL+RPGR DR+I  P+PD K +  IF +H    R +L + V  ++L  
Sbjct:   437 IAATNRVDILDSALLRPGRFDRQIYVPVPDIKGRASIFRVHLGPLRTSLDKTVLSRKLAA 496

Query:   117 AKDDLSGADIKAIC 130
                  SGADI  +C
Sbjct:   497 HTPGFSGADISNVC 510


>UNIPROTKB|E2QYF3 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0060013 "righting reflex" evidence=IEA]
            [GO:0042552 "myelination" evidence=IEA] [GO:0042407 "cristae
            formation" evidence=IEA] [GO:0040014 "regulation of multicellular
            organism growth" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
            junction development" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
            GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
            GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
            GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
            GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
            OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            EMBL:AAEX03005521 RefSeq:XP_547682.2 ProteinModelPortal:E2QYF3
            Ensembl:ENSCAFT00000029872 GeneID:490560 KEGG:cfa:490560
            Uniprot:E2QYF3
        Length = 806

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 57/134 (42%), Positives = 83/134 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF +A ++AP I+FIDEIDAVG KR   N GG+ E + T+ +LL ++DGF++  +V ++ 
Sbjct:   393 LFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILA 452

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   + L   +  ++L      
Sbjct:   453 GTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKEKLARKLAS 512

Query:   121 L----SGADIKAIC 130
             L    SGAD+  +C
Sbjct:   513 LTPGFSGADVANVC 526


>UNIPROTKB|G4N517 [details] [associations]
            symbol:MGG_05193 "Cell division control protein 48"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
            EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
            Uniprot:G4N517
        Length = 820

 Score = 261 (96.9 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 53/130 (40%), Positives = 84/130 (64%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE+++P+I+FIDEID++  KR  +N  GE E +R + +LL  +DG  +R +V V+ A
Sbjct:   308 FEEAEKNSPAIIFIDEIDSIAPKREKTN--GEVE-RRVVSQLLTLMDGMKARSNVVVMAA 364

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M L +DV+L+++       
Sbjct:   365 TNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGY 424

Query:   122 SGADIKAICT 131
              G+D+ A+C+
Sbjct:   425 VGSDVAALCS 434

 Score = 226 (84.6 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 53/128 (41%), Positives = 76/128 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +F  A   AP IVF+DE+D++   R  S  ++GG  +  R + +LL ++DG  S+ +V V
Sbjct:   581 IFDKARAAAPCIVFLDELDSIAKARGGSVGDAGGASD--RVVNQLLTEMDGMTSKKNVFV 638

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR E LDPAL RPGR+D  I  PLPDE  +  I      +  +++DV+LQ +    
Sbjct:   639 IGATNRPEQLDPALCRPGRLDSLIYVPLPDELGRLSILKAQLRKTPVSDDVDLQYIANKT 698

Query:   119 DDLSGADI 126
                SGAD+
Sbjct:   699 HGFSGADL 706


>UNIPROTKB|P0C5C0 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0006508 "proteolysis" evidence=IMP;IDA] [GO:0006979 "response
            to oxidative stress" evidence=IDA] [GO:0010468 "regulation of gene
            expression" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0040007 GO:GO:0006979 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
            EMBL:BX842583 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0010468
            HOGENOM:HOG000217276 KO:K03798 PIR:C70956 RefSeq:NP_218127.1
            RefSeq:NP_338259.1 RefSeq:YP_006517099.1 ProteinModelPortal:P0C5C0
            SMR:P0C5C0 PRIDE:P0C5C0 EnsemblBacteria:EBMYCT00000001212
            EnsemblBacteria:EBMYCT00000069111 GeneID:13317218 GeneID:885732
            GeneID:926520 KEGG:mtc:MT3714 KEGG:mtu:Rv3610c KEGG:mtv:RVBD_3610c
            PATRIC:18129921 TubercuList:Rv3610c OMA:RSEMIAR
            ProtClustDB:CLSK792593 Uniprot:P0C5C0
        Length = 760

 Score = 260 (96.6 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 53/126 (42%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A++++P I+F+DEIDAVG +R     GG  E ++T+ +LL ++DGF  R  V +I 
Sbjct:   247 LFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIA 306

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR+I    PD   +R +  +H+    +A D +L  L      
Sbjct:   307 ATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVG 366

Query:   121 LSGADI 126
             ++GAD+
Sbjct:   367 MTGADL 372


>DICTYBASE|DDB_G0284249 [details] [associations]
            symbol:DDB_G0284249 "peptidase M41, FtsH
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006461 "protein complex assembly" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0044351 "macropinocytosis" evidence=RCA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0284249 GO:GO:0016021 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0006461 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
            EMBL:AAFI02000064 RefSeq:XP_638674.1 ProteinModelPortal:Q54PX1
            SMR:Q54PX1 MEROPS:M41.A17 EnsemblProtists:DDB0229917 GeneID:8624503
            KEGG:ddi:DDB_G0284249 InParanoid:Q54PX1 OMA:VSIYGMN
            ProtClustDB:CLSZ2846729 Uniprot:Q54PX1
        Length = 764

 Score = 260 (96.6 bits), Expect = 2.6e-21, P = 2.6e-21
 Identities = 59/132 (44%), Positives = 79/132 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF  A ++AP IVFIDEIDAVG  R     SG   E + T+ +LL ++DGF    +V V+
Sbjct:   386 LFEQARKNAPCIVFIDEIDAVGRARGKGGFSGSNDERENTLNQLLVEMDGFKPLKNVVVL 445

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQE-LIMAK 118
              ATNR + LD AL+RPGR DR+I    PD K++  IF +H + + L + +N  E L    
Sbjct:   446 AATNRPDILDKALLRPGRFDRQITIDNPDLKSREEIFRVHLAALLLDKSINYAERLSKLT 505

Query:   119 DDLSGADIKAIC 130
                SGADI  +C
Sbjct:   506 PGFSGADIANVC 517


>POMBASE|SPAC1565.08 [details] [associations]
            symbol:cdc48 "AAA family ATPase Cdc48" species:4896
            "Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
            "endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
            evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IGI] [GO:0033554 "cellular response to
            stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
            complex" evidence=ISO] [GO:0051230 "spindle disassembly"
            evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
            localization involved in endoplasmic reticulum polarization at cell
            division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
            OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
            SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
            EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
            OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
            GO:GO:0051230 Uniprot:Q9P3A7
        Length = 815

 Score = 260 (96.6 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 53/130 (40%), Positives = 85/130 (65%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE+++P+I+FIDEID++  KR  +N  GE E +R + +LL  +DG  +R +V V+ A
Sbjct:   310 FEEAEKNSPAIIFIDEIDSIAPKREKTN--GEVE-RRVVSQLLTLMDGMKARSNVVVMAA 366

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   367 TNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGY 426

Query:   122 SGADIKAICT 131
              G+D+ ++C+
Sbjct:   427 VGSDLASLCS 436

 Score = 235 (87.8 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 53/131 (40%), Positives = 81/131 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +F  A   AP +VF+DE+D++   R  S  +SGG     R + +LL ++DG +S+ +V V
Sbjct:   582 IFDKARAAAPCVVFLDELDSIAKARGASAGDSGGG---DRVVNQLLTEMDGVNSKKNVFV 638

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR + +DPAL+RPGR+D+ I  PLPDE+ +  I         +AEDV+L+ +  A 
Sbjct:   639 IGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKAT 698

Query:   119 DDLSGADIKAI 129
                SGAD++ +
Sbjct:   699 HGFSGADLEFV 709


>UNIPROTKB|E1BFQ0 [details] [associations]
            symbol:E1BFQ0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0042407 "cristae formation" evidence=IEA] [GO:0034982
            "mitochondrial protein processing" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            GeneTree:ENSGT00530000063070 OMA:WDEKDFR GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            EMBL:DAAA02046282 IPI:IPI00707325 Ensembl:ENSBTAT00000056979
            Uniprot:E1BFQ0
        Length = 802

 Score = 259 (96.2 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 57/136 (41%), Positives = 83/136 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F +A ++AP I+F+DEIDA+G KR   + GG+ E + T+ +LL ++DGF+S  +V V+ 
Sbjct:   387 MFALARKNAPCILFVDEIDAIGRKRGRGHFGGQSEQENTLNQLLVEMDGFNSTTNVVVLA 446

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
              TNR + LDPAL+RPGR DR+I    PD K +  IF +H   + L E ++   L      
Sbjct:   447 GTNRPDVLDPALMRPGRFDRQIYIGPPDIKGRSSIFRVHLRPLKLDESLSKDALARKLAA 506

Query:   121 L------SGADIKAIC 130
             L      SGADI  +C
Sbjct:   507 LTPGFTGSGADISNVC 522


>ASPGD|ASPL0000069340 [details] [associations]
            symbol:AN7254 species:162425 "Emericella nidulans"
            [GO:0071470 "cellular response to osmotic stress" evidence=IEP]
            [GO:0097308 "cellular response to farnesol" evidence=IEP]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=IEA] [GO:0031134 "sister chromatid biorientation"
            evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:1900182 "positive regulation of protein
            localization to nucleus" evidence=IEA] [GO:0071630
            "nucleus-associated proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IEA] [GO:0051228
            "mitotic spindle disassembly" evidence=IEA] [GO:0016320
            "endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
            "piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
            "mitochondria-associated protein catabolic process" evidence=IEA]
            [GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
            endoplasmic reticulum localization involved in endoplasmic
            reticulum polarization at cell division site" evidence=IEA]
            [GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
            binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
            "nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
            AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
            AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
            STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
            OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
        Length = 823

 Score = 258 (95.9 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 53/130 (40%), Positives = 84/130 (64%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE+++P+I+FIDEID++  KR  +N  GE E +R + +LL  +DG  +R +V V+ A
Sbjct:   311 FEEAEKNSPAIIFIDEIDSIAPKREKTN--GEVE-RRVVSQLLTLMDGMKARSNVVVMAA 367

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I +IHT  M L EDV+L+ +       
Sbjct:   368 TNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGY 427

Query:   122 SGADIKAICT 131
              G+D+ ++C+
Sbjct:   428 VGSDLASLCS 437

 Score = 219 (82.2 bits), Expect = 7.2e-17, P = 7.2e-17
 Identities = 48/128 (37%), Positives = 76/128 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +F  A   AP +VF+DE+D++   R  S  ++GG  +  R + +LL ++DG  S+ +V V
Sbjct:   584 IFDKARAAAPCVVFLDELDSIAKSRGGSVGDAGGASD--RVVNQLLTEMDGMTSKKNVFV 641

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR E LD AL+RPGR+D  +  PLPD+ ++  I      +  +A DV+++ +    
Sbjct:   642 IGATNRPEQLDAALVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVASDVDIEFIASKT 701

Query:   119 DDLSGADI 126
                SGAD+
Sbjct:   702 HGFSGADL 709


>UNIPROTKB|H9KYT1 [details] [associations]
            symbol:LOC430766 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
            PANTHER:PTHR23077:SF18 GeneTree:ENSGT00700000104534
            EMBL:AADN02071262 Ensembl:ENSGALT00000000527 OMA:NRRTHAK
            Uniprot:H9KYT1
        Length = 538

 Score = 254 (94.5 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:    22 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 78

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:    79 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVGNETHGH 138

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   139 VGADLAALCS 148

 Score = 240 (89.5 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 47/130 (36%), Positives = 79/130 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   294 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 353

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L  L    + 
Sbjct:   354 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKMTNG 413

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   414 FSGADLTEIC 423


>CGD|CAL0000075 [details] [associations]
            symbol:AFG3 species:5476 "Candida albicans" [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005745 "m-AAA complex"
            evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
            evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
            EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
            ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
            GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
            Uniprot:Q5AJC2
        Length = 795

 Score = 257 (95.5 bits), Expect = 5.8e-21, P = 5.8e-21
 Identities = 48/115 (41%), Positives = 78/115 (67%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A E AP+I+F+DEIDA+G +R +   GG  E + T+ +LL ++DGFD+   V V+ 
Sbjct:   371 LFKTAREMAPAIIFVDEIDAIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTDHVVVLA 430

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL--AEDVNLQE 113
              TNR + LD AL+RPGR DR I   +PD + +++IF +H +++ L   +D++ ++
Sbjct:   431 GTNRPDILDKALLRPGRFDRHISIDVPDVEGRKQIFKVHLNKLKLKSVQDIDAKQ 485


>UNIPROTKB|Q5AJC2 [details] [associations]
            symbol:AFG3 "Putative uncharacterized protein"
            species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
            membrane" evidence=IDA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
            EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
            ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
            GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
            Uniprot:Q5AJC2
        Length = 795

 Score = 257 (95.5 bits), Expect = 5.8e-21, P = 5.8e-21
 Identities = 48/115 (41%), Positives = 78/115 (67%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A E AP+I+F+DEIDA+G +R +   GG  E + T+ +LL ++DGFD+   V V+ 
Sbjct:   371 LFKTAREMAPAIIFVDEIDAIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTDHVVVLA 430

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL--AEDVNLQE 113
              TNR + LD AL+RPGR DR I   +PD + +++IF +H +++ L   +D++ ++
Sbjct:   431 GTNRPDILDKALLRPGRFDRHISIDVPDVEGRKQIFKVHLNKLKLKSVQDIDAKQ 485


>UNIPROTKB|G3X757 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
            ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
        Length = 806

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 47/130 (36%), Positives = 80/130 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L+ L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>UNIPROTKB|Q3ZBT1 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
            UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
            STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
            InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
        Length = 806

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 47/130 (36%), Positives = 80/130 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L+ L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>UNIPROTKB|P55072 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
            complex binding" evidence=IEA] [GO:0042802 "identical protein
            binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
            evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0043231 "intracellular membrane-bounded organelle"
            evidence=ISS] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
            damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=IDA] [GO:0019904 "protein domain specific binding"
            evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
            protein catabolic process" evidence=IMP;TAS] [GO:0030968
            "endoplasmic reticulum unfolded protein response" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
            ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
            apoptotic process" evidence=TAS] [GO:0045184 "establishment of
            protein localization" evidence=TAS] [GO:0019985 "translesion
            synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
            evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IMP] [GO:0032436 "positive regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
            GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
            GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
            GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
            PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
            GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
            PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
            PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
            EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
            IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
            PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
            PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
            DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
            PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
            REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
            PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
            KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
            HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
            MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
            InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
            EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
            ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
            Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
        Length = 806

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 47/130 (36%), Positives = 80/130 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L+ L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>UNIPROTKB|P03974 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
            "double-strand break repair" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
            RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
            SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
            Uniprot:P03974
        Length = 806

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 47/130 (36%), Positives = 80/130 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L+ L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>MGI|MGI:99919 [details] [associations]
            symbol:Vcp "valosin containing protein" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
            "receptor binding" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
            "cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
            "double-strand break repair" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IGI]
            [GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IDA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
            [GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
            evidence=ISO] [GO:0019904 "protein domain specific binding"
            evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISO] [GO:0031334 "positive regulation of protein complex
            assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
            evidence=ISO;IDA] [GO:0032403 "protein complex binding"
            evidence=ISO] [GO:0032436 "positive regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
            "identical protein binding" evidence=ISO] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=ISO]
            [GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
            binding" evidence=ISO] [GO:0045732 "positive regulation of protein
            catabolic process" evidence=ISO] [GO:0051260 "protein
            homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
            evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
            GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
            GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
            GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
            PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
            ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
            EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
            EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
            EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
            UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
            PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
            PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
            SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
            STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
            UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
            Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
            UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
            EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
            Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
        Length = 806

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 47/130 (36%), Positives = 80/130 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L+ L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>RGD|621595 [details] [associations]
            symbol:Vcp "valosin-containing protein" species:10116 "Rattus
            norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
            [GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
            [GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
            process" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0016567 "protein ubiquitination"
            evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0018279 "protein N-linked glycosylation via asparagine"
            evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
            evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
            evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
            evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
            process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
            regulation of protein complex assembly" evidence=IEA;ISO]
            [GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
            "protein complex binding" evidence=IPI] [GO:0032436 "positive
            regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
            break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
            evidence=IDA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IDA] [GO:0043234 "protein complex"
            evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
            "positive regulation of protein catabolic process" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
            "aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
            GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
            GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
            GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
            IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
            ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
            MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
            World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
            GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
            NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
            Uniprot:P46462
        Length = 806

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 47/130 (36%), Positives = 80/130 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L+ L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
            symbol:vcp "valosin containing protein"
            species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
            damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
            ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
            break" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:2000058 "regulation of protein ubiquitination involved in
            ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
            ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
            IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
            ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
            Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
            InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
        Length = 806

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/130 (36%), Positives = 79/130 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  S+ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +++DV+L  L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>UNIPROTKB|F1SIH8 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
            EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
            Uniprot:F1SIH8
        Length = 808

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 237 (88.5 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 49/132 (37%), Positives = 80/132 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF--NIHTSRMTLAEDVNLQELIMAK 118
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   N+  S +  A DV+L+ L    
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKAGDVDLEFLAKMT 681

Query:   119 DDLSGADIKAIC 130
             +  SGAD+  IC
Sbjct:   682 NGFSGADLTEIC 693


>TIGR_CMR|NSE_0423 [details] [associations]
            symbol:NSE_0423 "ATP-dependent metalloprotease FtsH"
            species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 EMBL:CP000237 GenomeReviews:CP000237_GR
            HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001 RefSeq:YP_506309.1
            ProteinModelPortal:Q2GDY7 SMR:Q2GDY7 STRING:Q2GDY7 GeneID:3931660
            KEGG:nse:NSE_0423 PATRIC:22680905 OMA:ENIESLH
            ProtClustDB:CLSK749654 BioCyc:NSEN222891:GHFU-445-MONOMER
            Uniprot:Q2GDY7
        Length = 636

 Score = 255 (94.8 bits), Expect = 6.1e-21, P = 6.1e-21
 Identities = 50/126 (39%), Positives = 79/126 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F   +++AP ++FIDEIDAVG  R     GG  E ++T+ +LL ++DGF++   V +I 
Sbjct:   241 MFEQGKKNAPCLIFIDEIDAVGRHRGVGFGGGNDEREQTLNQLLVEMDGFEANEGVIIIA 300

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LDPAL+RPGR DR+I   +PD   +++I  +H  ++  A +V +  +      
Sbjct:   301 ATNRPDVLDPALLRPGRFDRQITISIPDIAGRQKILEVHLKKIPTAPNVEVSIIARGTPG 360

Query:   121 LSGADI 126
              SGAD+
Sbjct:   361 FSGADL 366


>UNIPROTKB|E2RLQ9 [details] [associations]
            symbol:VCP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
            NextBio:20856352 Uniprot:E2RLQ9
        Length = 822

 Score = 257 (95.5 bits), Expect = 6.1e-21, P = 6.1e-21
 Identities = 55/130 (42%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   306 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 362

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   363 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 422

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   423 VGADLAALCS 432

 Score = 242 (90.2 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/130 (36%), Positives = 80/130 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   578 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 637

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L+ L    + 
Sbjct:   638 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 697

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   698 FSGADLTEIC 707


>SGD|S000004695 [details] [associations]
            symbol:YTA12 "Component of the mitochondrial inner membrane
            m-AAA protease" species:4932 "Saccharomyces cerevisiae" [GO:0016887
            "ATPase activity" evidence=ISS;IDA;IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005739 "mitochondrion"
            evidence=IEA;IDA] [GO:0006508 "proteolysis" evidence=IEA;IMP]
            [GO:0016020 "membrane" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;IDA]
            [GO:0008233 "peptidase activity" evidence=IEA] [GO:0008237
            "metallopeptidase activity" evidence=IEA;IMP] [GO:0016021 "integral
            to membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
            evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IDA] [GO:0045041 "protein import into mitochondrial
            intermembrane space" evidence=TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006461 "protein complex assembly" evidence=IMP]
            [GO:0006465 "signal peptide processing" evidence=IMP] [GO:0005745
            "m-AAA complex" evidence=IDA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0031966 "mitochondrial membrane" evidence=IEA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 SGD:S000004695 EMBL:U09358 GO:GO:0005524
            GO:GO:0006461 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0008237 GO:GO:0004222 GO:GO:0016887 EMBL:BK006946
            GO:GO:0030163 EMBL:Z49259 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
            OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0097002 GO:GO:0045041
            GO:GO:0006465 EMBL:X81068 EMBL:AY693099 PIR:S54465
            RefSeq:NP_013807.1 ProteinModelPortal:P40341 SMR:P40341
            DIP:DIP-889N IntAct:P40341 MINT:MINT-596896 STRING:P40341
            MEROPS:M41.003 PaxDb:P40341 PeptideAtlas:P40341
            EnsemblFungi:YMR089C GeneID:855114 KEGG:sce:YMR089C CYGD:YMR089c
            OMA:NFSGAND NextBio:978455 Genevestigator:P40341 GermOnline:YMR089C
            Uniprot:P40341
        Length = 825

 Score = 257 (95.5 bits), Expect = 6.1e-21, P = 6.1e-21
 Identities = 57/133 (42%), Positives = 81/133 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF+ A E+APSIVFIDEIDA+G  R   N SG   E + T+ ++L ++DGF     V V+
Sbjct:   432 LFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPADHVVVL 491

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV-NLQELIMA- 117
               TNR + LD AL+RPGR DR I    P+ + ++ IF +H   + LA ++ +L+  + A 
Sbjct:   492 AGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAAL 551

Query:   118 KDDLSGADIKAIC 130
                 SGADI  +C
Sbjct:   552 TPGFSGADIANVC 564


>GENEDB_PFALCIPARUM|PFL1925w [details] [associations]
            symbol:PFL1925w "cell division protein FtsH,
            putative" species:5833 "Plasmodium falciparum" [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
            GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
            GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
            HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
            ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
            MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
            GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
            ProtClustDB:CLSZ2433071 Uniprot:Q8I526
        Length = 880

 Score = 257 (95.5 bits), Expect = 6.9e-21, P = 6.9e-21
 Identities = 59/134 (44%), Positives = 86/134 (64%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             LF  A   APSIVFIDEIDA+G KR     N  G+RE  +T+ +LL ++DGF +   + V
Sbjct:   233 LFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQREHDQTLNQLLVEMDGFSNTVHIMV 292

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELI-MA 117
             I ATNRI+TLD AL+RPGR DR +  PLPD   +++I  I+  +  +  D+ L+++  +A
Sbjct:   293 IGATNRIDTLDSALLRPGRFDRIVYVPLPDINGRKKILEIYIKK--IKSDLKLEDIEKIA 350

Query:   118 K--DDLSGADIKAI 129
             +     SGAD++ +
Sbjct:   351 RLTPGFSGADLENV 364


>UNIPROTKB|Q8I526 [details] [associations]
            symbol:PFL1925w "Cell division protein FtsH, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
            GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
            GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
            HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
            ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
            MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
            GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
            ProtClustDB:CLSZ2433071 Uniprot:Q8I526
        Length = 880

 Score = 257 (95.5 bits), Expect = 6.9e-21, P = 6.9e-21
 Identities = 59/134 (44%), Positives = 86/134 (64%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             LF  A   APSIVFIDEIDA+G KR     N  G+RE  +T+ +LL ++DGF +   + V
Sbjct:   233 LFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQREHDQTLNQLLVEMDGFSNTVHIMV 292

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELI-MA 117
             I ATNRI+TLD AL+RPGR DR +  PLPD   +++I  I+  +  +  D+ L+++  +A
Sbjct:   293 IGATNRIDTLDSALLRPGRFDRIVYVPLPDINGRKKILEIYIKK--IKSDLKLEDIEKIA 350

Query:   118 K--DDLSGADIKAI 129
             +     SGAD++ +
Sbjct:   351 RLTPGFSGADLENV 364


>DICTYBASE|DDB_G0288065 [details] [associations]
            symbol:cdcD "CDC48 family AAA ATPase" species:44689
            "Dictyostelium discoideum" [GO:0005615 "extracellular space"
            evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
            [GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
            cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
            [GO:0051301 "cell division" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
            GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
            HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
            ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
            EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
            InParanoid:P90532 Uniprot:P90532
        Length = 793

 Score = 256 (95.2 bits), Expect = 7.3e-21, P = 7.3e-21
 Identities = 58/130 (44%), Positives = 80/130 (61%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++APSI+FIDEID++  KR    + GE E +R + +LL  +DG  SR  V V+ A
Sbjct:   288 FEEAEKNAPSIIFIDEIDSIAPKR--EKTQGEVE-RRIVSQLLTLMDGLKSRAHVIVMGA 344

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+I+  +PD   +  I  IHT  M L E V+L+ +       
Sbjct:   345 TNRPNSIDPALRRFGRFDREIDITIPDATGRLEIMRIHTKNMKLDETVDLEAVANETHGY 404

Query:   122 SGADIKAICT 131
              GAD+ A+CT
Sbjct:   405 VGADLAALCT 414

 Score = 226 (84.6 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 48/132 (36%), Positives = 82/132 (62%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             LF  A + AP ++F DE+D++   R  S  ++GG  +  R + ++L ++DG +++ +V +
Sbjct:   560 LFDKARQAAPCVLFFDELDSIARSRGSSQGDAGGAGD--RVINQILTEMDGMNAKKNVFI 617

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR + +DPA++RPGR+D+ I  PLPD  ++  I     ++  +A+DV+L+ L    
Sbjct:   618 IGATNRPDIIDPAILRPGRLDQLIYIPLPDLPSRVAILKACLNKSPVAKDVDLEFLGQKT 677

Query:   119 DDLSGADIKAIC 130
                SGAD+  IC
Sbjct:   678 QGFSGADLTEIC 689


>UNIPROTKB|Q6GL04 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
            "chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
            "translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
            protein catabolic process" evidence=ISS] [GO:0032403 "protein
            complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
            evidence=ISS] [GO:0035861 "site of double-strand break"
            evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
            GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
            ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
            GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
            InParanoid:Q6GL04 Uniprot:Q6GL04
        Length = 805

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 54/130 (41%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M L++DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 240 (89.5 bits), Expect = 3.9e-19, P = 3.9e-19
 Identities = 47/130 (36%), Positives = 79/130 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG  ++ +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV+L  L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPVAKDVDLDFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>UNIPROTKB|P23787 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
            "response to DNA damage stimulus" evidence=ISS] [GO:0016567
            "protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
            via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
            [GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0035101 "FACT
            complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
            EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
            ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
            KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
        Length = 805

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 54/130 (41%), Positives = 83/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   290 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAA 346

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++DPAL R GR DR+++  +PD   +  I  IHT  M L++DV+L+++       
Sbjct:   347 TNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGH 406

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   407 VGADLAALCS 416

 Score = 236 (88.1 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/130 (35%), Positives = 78/130 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F  A + AP ++F DE+D++   R  +   G     R + ++L ++DG   + +V +I 
Sbjct:   562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIG 621

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + +DPA++RPGR+D+ I  PLPDEK++  I   +  +  +A+DV++  L    + 
Sbjct:   622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNG 681

Query:   121 LSGADIKAIC 130
              SGAD+  IC
Sbjct:   682 FSGADLTEIC 691


>TAIR|locus:2075581 [details] [associations]
            symbol:ftsh7 "FTSH protease 7" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
            GO:GO:0009535 EMBL:AL133292 GO:GO:0004176 HOGENOM:HOG000217276
            KO:K03798 EMBL:AY099737 EMBL:BT000368 IPI:IPI00522102 PIR:T45642
            RefSeq:NP_566889.1 UniGene:At.43767 ProteinModelPortal:Q9SD67
            SMR:Q9SD67 MEROPS:M41.A04 PaxDb:Q9SD67 PRIDE:Q9SD67
            EnsemblPlants:AT3G47060.1 GeneID:823859 KEGG:ath:AT3G47060
            GeneFarm:2514 TAIR:At3g47060 InParanoid:Q9SD67 OMA:SNQVQKV
            PhylomeDB:Q9SD67 ProtClustDB:CLSN2689036 Genevestigator:Q9SD67
            Uniprot:Q9SD67
        Length = 802

 Score = 254 (94.5 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 56/129 (43%), Positives = 77/129 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS-NSGGEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF  A++ APSI+FIDEIDAV   R      G   E ++T+ +LL ++DGFDS   V V+
Sbjct:   409 LFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVL 468

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR--MTLAEDVNLQELIMA 117
              ATNR + LDPAL RPGR DR +    PD+  +  I  +H S+  + L +DVNL  +   
Sbjct:   469 GATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASM 528

Query:   118 KDDLSGADI 126
                 +GAD+
Sbjct:   529 TTGFTGADL 537


>TAIR|locus:2011952 [details] [associations]
            symbol:FTSH1 "FTSH protease 1" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0031977
            "thylakoid lumen" evidence=IDA] [GO:0010206 "photosystem II repair"
            evidence=TAS] [GO:0010304 "PSII associated light-harvesting complex
            II catabolic process" evidence=RCA;TAS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0007275
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 eggNOG:COG0465
            TIGRFAMs:TIGR01241 GO:GO:0009535 GO:GO:0031977 GO:GO:0004176
            GO:GO:0010206 EMBL:AC007980 EMBL:X99808 EMBL:AY091095 EMBL:AY123034
            EMBL:Y12780 IPI:IPI00518805 PIR:G96538 RefSeq:NP_564563.1
            UniGene:At.21777 ProteinModelPortal:Q39102 SMR:Q39102 STRING:Q39102
            MEROPS:M41.020 PaxDb:Q39102 PRIDE:Q39102 EnsemblPlants:AT1G50250.1
            GeneID:841447 KEGG:ath:AT1G50250 GeneFarm:2667 TAIR:At1g50250
            HOGENOM:HOG000217276 InParanoid:Q39102 KO:K03798 OMA:GGNPAMN
            PhylomeDB:Q39102 ProtClustDB:CLSN2688633 Genevestigator:Q39102
            GermOnline:AT1G50250 GO:GO:0010304 Uniprot:Q39102
        Length = 716

 Score = 252 (93.8 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 52/127 (40%), Positives = 76/127 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+  AP IVFIDEIDAVG +R     GG  E ++T+ +LL ++DGF     V V+ 
Sbjct:   346 LFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 405

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++    PD   + +I  +H+    L +DV+  ++      
Sbjct:   406 ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPG 465

Query:   121 LSGADIK 127
              +GAD++
Sbjct:   466 FTGADLQ 472


>FB|FBgn0035443 [details] [associations]
            symbol:CG12010 species:7227 "Drosophila melanogaster"
            [GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014296 GO:GO:0006200 GO:GO:0016887 HSSP:Q01853
            UniGene:Dm.11249 GeneID:38421 KEGG:dme:Dmel_CG12010
            FlyBase:FBgn0035443 GenomeRNAi:38421 NextBio:808578
            RefSeq:NP_647812.1 ProteinModelPortal:Q9VZQ0 SMR:Q9VZQ0
            IntAct:Q9VZQ0 MINT:MINT-874256 STRING:Q9VZQ0 PRIDE:Q9VZQ0
            UCSC:CG12010-RA InParanoid:Q9VZQ0 OMA:GCAKTTI PhylomeDB:Q9VZQ0
            ArrayExpress:Q9VZQ0 Bgee:Q9VZQ0 Uniprot:Q9VZQ0
        Length = 736

 Score = 252 (93.8 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 52/134 (38%), Positives = 83/134 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQ-RTMLELLNQLDGFDSRGD---V 56
             +F  A ++AP ++F+DEID++  +R  S+ GG  ++Q R +  LL +++G    G    +
Sbjct:   554 IFDTARKNAPCLIFLDEIDSLVGRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHI 613

Query:    57 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIM 116
              V+ ATNR + +D AL+RPGR D+ I  P PDEK++  +  +H+ RM   E+V LQE+  
Sbjct:   614 LVVAATNRPDMIDDALLRPGRFDKLIHVPAPDEKSRLALLKLHSQRMPFHENVFLQEIAA 673

Query:   117 AKDDLSGADIKAIC 130
               D  SGAD+  +C
Sbjct:   674 RTDRYSGADLCNLC 687


>ZFIN|ZDB-GENE-060312-22 [details] [associations]
            symbol:zgc:136908 "zgc:136908" species:7955 "Danio
            rerio" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
            GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
            EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
            UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
            Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
            InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
        Length = 805

 Score = 252 (93.8 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 55/130 (42%), Positives = 82/130 (63%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F  AE++AP+I+FIDE+DA+  KR  ++  GE E +R + +LL  +DG   R  V V+ A
Sbjct:   292 FEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVVVMAA 348

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++D AL R GR DR+I+  +PD   +  I  IHT  M L+EDV+L+++       
Sbjct:   349 TNRPNSVDAALRRFGRFDREIDIGIPDSTGRLEILQIHTKNMKLSEDVDLEQISAETHGH 408

Query:   122 SGADIKAICT 131
              GAD+ A+C+
Sbjct:   409 VGADLAALCS 418

 Score = 224 (83.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 47/132 (35%), Positives = 80/132 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDS--NSGGEREIQRTMLELLNQLDGFDSRGDVKV 58
             +F  A + AP I+F DE+D++   R     ++GG  +  R + ++L ++DG  ++ +V +
Sbjct:   564 VFDKARQAAPCILFFDELDSIAKARGGGAGDAGGAAD--RVINQILTEMDGMTNKKNVFI 621

Query:    59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
             I ATNR + +DPA++RPGR+D+ I  PLPD  ++  I   +  +  +A+DV+L  L    
Sbjct:   622 IGATNRPDIIDPAILRPGRLDQLIYIPLPDMPSRTAILRANLRKSPVAKDVDLMYLSKIT 681

Query:   119 DDLSGADIKAIC 130
             +  SGAD+  IC
Sbjct:   682 EGFSGADLTEIC 693


>UNIPROTKB|F1NXP0 [details] [associations]
            symbol:SPG7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0007005 "mitochondrion
            organization" evidence=IEA] [GO:0008089 "anterograde axon cargo
            transport" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
            GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
            TIGRFAMs:TIGR01241 GO:GO:0007005 OMA:MMDHEAK EMBL:AADN02054132
            IPI:IPI00601320 Ensembl:ENSGALT00000010016 Uniprot:F1NXP0
        Length = 768

 Score = 251 (93.4 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 59/133 (44%), Positives = 79/133 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LFR A+  AP IV+IDEIDAVG KR  + SG    E ++T+ +LL ++DG  +   V V+
Sbjct:   366 LFREAQARAPCIVYIDEIDAVGKKRSTNVSGFANAEEEQTLNQLLVEMDGMGTTDHVIVL 425

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNL--QELIMA 117
              +TNR + LD AL+RPGR+DR I   LP  + +R IF  H   + L +D +   Q L   
Sbjct:   426 ASTNRADVLDNALMRPGRLDRHIFIDLPTLQERREIFEQHLKGLKLIQDASFYSQHLAEL 485

Query:   118 KDDLSGADIKAIC 130
                 SGADI  IC
Sbjct:   486 TPGFSGADIANIC 498


>TAIR|locus:2154568 [details] [associations]
            symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=RCA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
            GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
            ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
            RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
            SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
            EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
            GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
            PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
        Length = 806

 Score = 251 (93.4 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 58/131 (44%), Positives = 79/131 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKR---YDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 57
             LF  A++ APSI+FIDEIDAV   R   +   S  ERE  +T+ +LL ++DGFDS   V 
Sbjct:   413 LFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDERE--QTLNQLLTEMDGFDSSSAVI 470

Query:    58 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR--MTLAEDVNLQELI 115
             V+ ATNR + LDPAL RPGR DR +    PD+  +  I  +H S+  + L +DVNL  + 
Sbjct:   471 VLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIA 530

Query:   116 MAKDDLSGADI 126
                   +GAD+
Sbjct:   531 SMTTGFTGADL 541


>TAIR|locus:2157637 [details] [associations]
            symbol:VAR1 "VARIEGATED 1" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS;IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA;IDA]
            [GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010304 "PSII
            associated light-harvesting complex II catabolic process"
            evidence=RCA;TAS] [GO:0009579 "thylakoid" evidence=IDA] [GO:0010205
            "photoinhibition" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            [GO:0009773 "photosynthetic electron transport in photosystem I"
            evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
            evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            GO:GO:0016021 GO:GO:0007275 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006508 GO:GO:0009941
            GO:GO:0004222 GO:GO:0016887 EMBL:AB023032 GO:GO:0010205
            eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0009535
            HOGENOM:HOG000217276 KO:K03798 ProtClustDB:CLSN2688633
            GO:GO:0010304 EMBL:AY126987 IPI:IPI00517420 RefSeq:NP_568604.1
            UniGene:At.21670 UniGene:At.66720 ProteinModelPortal:Q9FH02
            SMR:Q9FH02 STRING:Q9FH02 MEROPS:M41.024 PaxDb:Q9FH02 PRIDE:Q9FH02
            EnsemblPlants:AT5G42270.1 GeneID:834232 KEGG:ath:AT5G42270
            GeneFarm:4746 TAIR:At5g42270 InParanoid:Q9FH02 OMA:RARASMP
            PhylomeDB:Q9FH02 Genevestigator:Q9FH02 GermOnline:AT5G42270
            Uniprot:Q9FH02
        Length = 704

 Score = 250 (93.1 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 51/127 (40%), Positives = 77/127 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+  AP IVFIDEIDAVG +R     GG  E ++T+ +LL ++DGF     V V+ 
Sbjct:   334 LFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 393

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL+RPGR DR++    PD   + +I  +H+    + +DV+ +++      
Sbjct:   394 ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPG 453

Query:   121 LSGADIK 127
              +GAD++
Sbjct:   454 FTGADLQ 460


>POMBASE|SPBC543.09 [details] [associations]
            symbol:yta12 "mitochondrial m-AAA protease Yta12
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005745 "m-AAA complex" evidence=ISO] [GO:0006091 "generation
            of precursor metabolites and energy" evidence=NAS] [GO:0006465
            "signal peptide processing" evidence=ISO] [GO:0006508 "proteolysis"
            evidence=ISO] [GO:0008237 "metallopeptidase activity" evidence=ISO]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISO] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
            assembly" evidence=ISO] [GO:0045041 "protein import into
            mitochondrial intermembrane space" evidence=ISO] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC543.09
            GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
            GO:GO:0006508 GO:GO:0008237 GO:GO:0004222 GO:GO:0006091
            GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
            KO:K08956 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 OMA:LYRFVTT
            OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0045041 GO:GO:0006465
            GO:GO:0033108 RefSeq:NP_596797.1 ProteinModelPortal:Q9HGM3
            SMR:Q9HGM3 STRING:Q9HGM3 MEROPS:M41.A14 EnsemblFungi:SPBC543.09.1
            GeneID:2541079 KEGG:spo:SPBC543.09 NextBio:20802192 Uniprot:Q9HGM3
        Length = 773

 Score = 249 (92.7 bits), Expect = 4.0e-20, P = 4.0e-20
 Identities = 53/133 (39%), Positives = 78/133 (58%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNS-GGEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF  A ++AP I+FIDEIDA+G  R      G   E + T+ +LL ++DGF S   + V 
Sbjct:   380 LFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVF 439

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNL--QELIMA 117
               TNR + LDPAL+RPGR DR+I    PD   + +IF +H   +  A++++L  + L + 
Sbjct:   440 AGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVL 499

Query:   118 KDDLSGADIKAIC 130
                 +GADI  +C
Sbjct:   500 TSGFTGADIMNVC 512


>TAIR|locus:2066128 [details] [associations]
            symbol:ftsh3 "FTSH protease 3" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0004222 EMBL:AC005315 GO:GO:0030163 eggNOG:COG0465
            HOGENOM:HOG000217277 KO:K08956 OMA:WDEKDFR TIGRFAMs:TIGR01241
            HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176 EMBL:BT002743 EMBL:AY063914
            EMBL:AK226271 IPI:IPI00525466 PIR:T02738 RefSeq:NP_850129.1
            UniGene:At.24335 ProteinModelPortal:Q84WU8 SMR:Q84WU8
            MEROPS:M41.022 PaxDb:Q84WU8 PRIDE:Q84WU8 EnsemblPlants:AT2G29080.1
            GeneID:817456 KEGG:ath:AT2G29080 GeneFarm:2506 TAIR:At2g29080
            InParanoid:Q84WU8 PhylomeDB:Q84WU8 ProtClustDB:CLSN2692039
            Genevestigator:Q84WU8 Uniprot:Q84WU8
        Length = 809

 Score = 249 (92.7 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 55/132 (41%), Positives = 78/132 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF+ A + APSI+FIDEIDA+G  R     GG  E + T+ +LL ++DGF +   V V+ 
Sbjct:   406 LFQEARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVVVLA 465

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNL--QELIMAK 118
              TNR + LD AL+RPGR DR+I    PD K + +IF I+  ++ L  + +   Q L    
Sbjct:   466 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALT 525

Query:   119 DDLSGADIKAIC 130
                +GADI  +C
Sbjct:   526 PGFAGADIANVC 537


>GENEDB_PFALCIPARUM|PF07_0047 [details] [associations]
            symbol:PF07_0047 "cell division cycle ATPase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0051726 "regulation of cell cycle"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0016887 GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 PANTHER:PTHR23077:SF18
            SMART:SM01073 EMBL:AL844506 EMBL:M96757 RefSeq:XP_001349023.1
            ProteinModelPortal:P46468 IntAct:P46468 MINT:MINT-1593477
            PRIDE:P46468 EnsemblProtists:PF07_0047:mRNA GeneID:2655095
            KEGG:pfa:PF07_0047 EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 251 (93.4 bits), Expect = 5.0e-20, P = 5.0e-20
 Identities = 55/130 (42%), Positives = 79/130 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F+ A E  P I+FIDEID++  KR  SN+  E E +R + +LL  +DG     +V V+ 
Sbjct:   612 IFKKASEKTPCIIFIDEIDSIANKRSKSNN--ELE-KRVVSQLLTLMDGLKKNNNVLVLA 668

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR  ++DPAL R GR DR+IE P+PDE+ +  I    T +M L  DVNL+++      
Sbjct:   669 ATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKECHG 728

Query:   121 LSGADIKAIC 130
               GAD+  +C
Sbjct:   729 YVGADLAQLC 738

 Score = 224 (83.9 bits), Expect = 3.8e-17, P = 3.8e-17
 Identities = 48/130 (36%), Positives = 76/130 (58%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A   +P I+F DEID++  +R +SN+  +    R + ++L ++DG + +  + +I 
Sbjct:  1019 LFDKARAASPCIIFFDEIDSLAKER-NSNTNNDAS-DRVINQILTEIDGINEKKTIFIIA 1076

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL RPGR+D+ I   LPD K++  IF        L EDV++ ++    + 
Sbjct:  1077 ATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEG 1136

Query:   121 LSGADIKAIC 130
              SGADI  +C
Sbjct:  1137 FSGADITNLC 1146


>UNIPROTKB|P46468 [details] [associations]
            symbol:PF07_0047 "Putative cell division cycle ATPase"
            species:36329 "Plasmodium falciparum 3D7" [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0051726 "regulation of cell cycle" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0016887
            GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 PANTHER:PTHR23077:SF18 SMART:SM01073 EMBL:AL844506
            EMBL:M96757 RefSeq:XP_001349023.1 ProteinModelPortal:P46468
            IntAct:P46468 MINT:MINT-1593477 PRIDE:P46468
            EnsemblProtists:PF07_0047:mRNA GeneID:2655095 KEGG:pfa:PF07_0047
            EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 251 (93.4 bits), Expect = 5.0e-20, P = 5.0e-20
 Identities = 55/130 (42%), Positives = 79/130 (60%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             +F+ A E  P I+FIDEID++  KR  SN+  E E +R + +LL  +DG     +V V+ 
Sbjct:   612 IFKKASEKTPCIIFIDEIDSIANKRSKSNN--ELE-KRVVSQLLTLMDGLKKNNNVLVLA 668

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR  ++DPAL R GR DR+IE P+PDE+ +  I    T +M L  DVNL+++      
Sbjct:   669 ATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKECHG 728

Query:   121 LSGADIKAIC 130
               GAD+  +C
Sbjct:   729 YVGADLAQLC 738

 Score = 224 (83.9 bits), Expect = 3.8e-17, P = 3.8e-17
 Identities = 48/130 (36%), Positives = 76/130 (58%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A   +P I+F DEID++  +R +SN+  +    R + ++L ++DG + +  + +I 
Sbjct:  1019 LFDKARAASPCIIFFDEIDSLAKER-NSNTNNDAS-DRVINQILTEIDGINEKKTIFIIA 1076

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR + LD AL RPGR+D+ I   LPD K++  IF        L EDV++ ++    + 
Sbjct:  1077 ATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEG 1136

Query:   121 LSGADIKAIC 130
              SGADI  +C
Sbjct:  1137 FSGADITNLC 1146


>UNIPROTKB|G4N7L8 [details] [associations]
            symbol:MGG_06380 "ATPase family AAA domain-containing
            protein 2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0017111 EMBL:CM001234
            RefSeq:XP_003717194.1 EnsemblFungi:MGG_06380T0 GeneID:2684535
            KEGG:mgr:MGG_06380 Uniprot:G4N7L8
        Length = 1706

 Score = 252 (93.8 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 58/131 (44%), Positives = 73/131 (55%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A    PSI+F DEID +   R          I  T+L L+   DG D RG V VI 
Sbjct:   710 LFEEARRTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALM---DGMDGRGQVIVIG 766

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATNR +++DPAL RPGR DR+  FPLPD + +R I +IHT    LA+D     L      
Sbjct:   767 ATNRPDSVDPALRRPGRFDREFYFPLPDVEGRRSIIDIHTKDWGLADDFK-DSLARQTKG 825

Query:   121 LSGADIKAICT 131
               GAD++A+CT
Sbjct:   826 YGGADLRALCT 836


>WB|WBGene00010562 [details] [associations]
            symbol:cdc-48.3 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
            or egg hatching" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0007091
            "metaphase/anaphase transition of mitotic cell cycle" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0007067 "mitosis" evidence=IMP] [GO:0019901 "protein kinase
            binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0006469 "negative regulation of protein kinase activity"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
            "ATP catabolic process" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0009792 GO:GO:0006898
            GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0007052
            GO:GO:0002119 GO:GO:0006469 GO:GO:0000003 GO:GO:0016887 HSSP:Q01853
            eggNOG:COG0464 HOGENOM:HOG000223225 GeneTree:ENSGT00700000104502
            GO:GO:0007091 EMBL:Z75712 KO:K13525 PIR:T23322 RefSeq:NP_492211.1
            ProteinModelPortal:Q21222 SMR:Q21222 PaxDb:Q21222
            EnsemblMetazoa:K04G2.3 GeneID:172586 KEGG:cel:CELE_K04G2.3
            UCSC:K04G2.3 CTD:172586 WormBase:K04G2.3 InParanoid:Q21222
            OMA:QVAPTIV NextBio:876139 Uniprot:Q21222
        Length = 724

 Score = 246 (91.7 bits), Expect = 7.4e-20, P = 7.4e-20
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A + AP+IVF DEIDAVG+ R    S G  +  R + +LL +LDG +    V ++ 
Sbjct:   544 LFSRARQVAPTIVFFDEIDAVGSSRGSEKSSGVSD--RVLAQLLTELDGLEKSSRVILLA 601

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN-LQELIMAKD 119
             ATNR + LD AL+RPGR+DR I   LP E T+R I  + T +M   + V  + +L+    
Sbjct:   602 ATNRPDQLDSALLRPGRLDRAIYVGLPCEVTRRAILEMRTKKMKFDDTVRTIDKLVEKTS 661

Query:   120 DLSGADIKAIC 130
               SGA++ A+C
Sbjct:   662 GYSGAELVAVC 672


>TIGR_CMR|CJE_1085 [details] [associations]
            symbol:CJE_1085 "cell division protein FtsH, putative"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0051301 EMBL:CP000025 GenomeReviews:CP000025_GR
            eggNOG:COG0465 GO:GO:0017111 HOGENOM:HOG000217276 KO:K01417
            RefSeq:YP_179078.1 ProteinModelPortal:Q5HUF7 SMR:Q5HUF7
            STRING:Q5HUF7 GeneID:3231594 KEGG:cjr:CJE1085 PATRIC:20043979
            OMA:HRSDERE ProtClustDB:CLSK2395802
            BioCyc:CJEJ195099:GJC0-1111-MONOMER Uniprot:Q5HUF7
        Length = 538

 Score = 243 (90.6 bits), Expect = 8.2e-20, P = 8.2e-20
 Identities = 58/129 (44%), Positives = 79/129 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+  APSIVFIDEIDAVG  R +  S  ER+   T+ +LL Q+DGF+    V VI 
Sbjct:   236 LFSKAKMMAPSIVFIDEIDAVGKARGEM-SNVERD--STLNQLLTQMDGFEDNSGVIVIA 292

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATN+IE +DPAL+R GR DR+I   LPD K + +I  I+        ++NL ++  A   
Sbjct:   293 ATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKDKN--NNINLNKIAKASVG 350

Query:   121 LSGADIKAI 129
              SGA ++ +
Sbjct:   351 FSGAGLETL 359


>CGD|CAL0002985 [details] [associations]
            symbol:orf19.3949 species:5476 "Candida albicans" [GO:0042406
            "extrinsic to endoplasmic reticulum membrane" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0031936
            "negative regulation of chromatin silencing" evidence=IEA]
            [GO:0042393 "histone binding" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] InterPro:IPR001487 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439
            PROSITE:PS00674 PROSITE:PS50014 SMART:SM00382 CGD:CAL0002985
            GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:1.20.920.10
            SUPFAM:SSF47370 EMBL:AACQ01000012 EMBL:AACQ01000011
            RefSeq:XP_721858.1 RefSeq:XP_722018.1 ProteinModelPortal:Q5AK72
            STRING:Q5AK72 GeneID:3636302 GeneID:3636397 KEGG:cal:CaO19.11431
            KEGG:cal:CaO19.3949 Uniprot:Q5AK72
        Length = 1314

 Score = 248 (92.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 56/132 (42%), Positives = 74/132 (56%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A+   PSI+F DEID +   R          I  T+L L+   DG D+RG V VI 
Sbjct:   490 LFEEAKNQQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALM---DGMDNRGQVIVIG 546

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKD 119
             ATNR + +DPAL RPGR DR+  FPLPD  +++ I  IHT +      D+ L+ L     
Sbjct:   547 ATNRPDAIDPALRRPGRFDREFYFPLPDLGSRKEILKIHTRKWNPELPDLFLERLAQLTK 606

Query:   120 DLSGADIKAICT 131
                GAD++A+CT
Sbjct:   607 GYGGADLRALCT 618


>WB|WBGene00007352 [details] [associations]
            symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
            [GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
            helicase activity" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
            "collagen and cuticulin-based cuticle development" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
            "meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=IMP] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IGI] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
            GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
            HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
            GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
            ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
            MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
            EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
            KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
            InParanoid:P54811 NextBio:884814 Uniprot:P54811
        Length = 809

 Score = 245 (91.3 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 54/130 (41%), Positives = 81/130 (62%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F   E++ P+I+FIDEIDA+  KR  +N  GE E +R + +LL  +DG   R ++ VI A
Sbjct:   296 FEECEKNQPAILFIDEIDAIAPKREKTN--GEVE-RRIVSQLLTLMDGVKGRSNLVVIAA 352

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++D AL R GR DR+I+  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   353 TNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGF 412

Query:   122 SGADIKAICT 131
              GAD+ ++C+
Sbjct:   413 VGADLASLCS 422

 Score = 220 (82.5 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 46/131 (35%), Positives = 77/131 (58%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
             +F  A   AP ++F DE+D++   R     G G     R + ++L ++DG +++ +V +I
Sbjct:   568 VFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNVFII 627

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
              ATNR + +DPA++RPGR+D+ I  PLPDE ++ +I      +  L++D++L  L     
Sbjct:   628 GATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTV 687

Query:   120 DLSGADIKAIC 130
               SGAD+  IC
Sbjct:   688 GFSGADLTEIC 698


>UNIPROTKB|P54811 [details] [associations]
            symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
            homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
            GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
            GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
            OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
            RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
            DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
            PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
            EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
            UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
            NextBio:884814 Uniprot:P54811
        Length = 809

 Score = 245 (91.3 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 54/130 (41%), Positives = 81/130 (62%)

Query:     2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
             F   E++ P+I+FIDEIDA+  KR  +N  GE E +R + +LL  +DG   R ++ VI A
Sbjct:   296 FEECEKNQPAILFIDEIDAIAPKREKTN--GEVE-RRIVSQLLTLMDGVKGRSNLVVIAA 352

Query:    62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
             TNR  ++D AL R GR DR+I+  +PD   +  I  IHT  M LA+DV+L+++       
Sbjct:   353 TNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGF 412

Query:   122 SGADIKAICT 131
              GAD+ ++C+
Sbjct:   413 VGADLASLCS 422

 Score = 220 (82.5 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 46/131 (35%), Positives = 77/131 (58%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVI 59
             +F  A   AP ++F DE+D++   R     G G     R + ++L ++DG +++ +V +I
Sbjct:   568 VFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNVFII 627

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD 119
              ATNR + +DPA++RPGR+D+ I  PLPDE ++ +I      +  L++D++L  L     
Sbjct:   628 GATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTV 687

Query:   120 DLSGADIKAIC 130
               SGAD+  IC
Sbjct:   688 GFSGADLTEIC 698


>TAIR|locus:2025052 [details] [associations]
            symbol:ftsh10 "FTSH protease 10" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009536
            "plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0005743
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
            EMBL:AC022464 ProtClustDB:CLSN2692039 EMBL:AY064138 EMBL:AY124808
            EMBL:AK230173 IPI:IPI00520253 PIR:H86209 RefSeq:NP_172231.2
            UniGene:At.23339 ProteinModelPortal:Q8VZI8 SMR:Q8VZI8 STRING:Q8VZI8
            MEROPS:M41.023 PaxDb:Q8VZI8 PRIDE:Q8VZI8 EnsemblPlants:AT1G07510.1
            GeneID:837265 KEGG:ath:AT1G07510 GeneFarm:2535 GeneFarm:2675
            TAIR:At1g07510 InParanoid:Q8VZI8 OMA:YSEDTAM PhylomeDB:Q8VZI8
            Genevestigator:Q8VZI8 Uniprot:Q8VZI8
        Length = 813

 Score = 245 (91.3 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 56/133 (42%), Positives = 79/133 (59%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVI 59
             LF+ A + APSI+FIDEIDA+G  R     SGG  E + T+ +LL ++DGF +   V V+
Sbjct:   411 LFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 470

Query:    60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNL--QELIMA 117
               TNR + LD AL+RPGR DR+I    PD K + +IF I+  ++ L  + +   Q L   
Sbjct:   471 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAAL 530

Query:   118 KDDLSGADIKAIC 130
                 +GADI  +C
Sbjct:   531 TPGFAGADIANVC 543


>SGD|S000003502 [details] [associations]
            symbol:YTA7 "Protein that localizes to chromatin and
            regulates histone expression" species:4932 "Saccharomyces
            cerevisiae" [GO:0042393 "histone binding" evidence=IDA;IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0031936 "negative regulation of chromatin silencing"
            evidence=IMP] [GO:0003682 "chromatin binding" evidence=IMP;IDA]
            [GO:0042406 "extrinsic to endoplasmic reticulum membrane"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IMP] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] InterPro:IPR001487 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439
            PROSITE:PS00674 PROSITE:PS50014 SMART:SM00382 SGD:S000003502
            GO:GO:0005524 GO:GO:0005634 EMBL:BK006941 GO:GO:0045944
            GO:GO:0003682 GO:GO:0000122 GO:GO:0031936 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0042393 GO:GO:0042406 Gene3D:1.20.920.10
            SUPFAM:SSF47370 PROSITE:PS00633 EMBL:Y07893 EMBL:X81072
            GeneTree:ENSGT00550000074694 EMBL:Z73055 PIR:S64603
            RefSeq:NP_011786.1 ProteinModelPortal:P40340 SMR:P40340
            DIP:DIP-6557N IntAct:P40340 MINT:MINT-629064 STRING:P40340
            PaxDb:P40340 EnsemblFungi:YGR270W GeneID:853186 KEGG:sce:YGR270W
            CYGD:YGR270w HOGENOM:HOG000157282 OMA:YPELYQN OrthoDB:EOG473T0K
            NextBio:973329 Genevestigator:P40340 GermOnline:YGR270W
            Uniprot:P40340
        Length = 1379

 Score = 248 (92.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 55/132 (41%), Positives = 75/132 (56%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A++H PSI+F DEID +   R          I  T+L L+   DG D+RG V VI 
Sbjct:   503 LFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALM---DGMDNRGQVIVIG 559

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN-LQELIMAKD 119
             ATNR + +DPAL RPGR DR+  FPLPD K + +I  I T + +     N + +L     
Sbjct:   560 ATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTK 619

Query:   120 DLSGADIKAICT 131
                GAD++++CT
Sbjct:   620 GYGGADLRSLCT 631


>WB|WBGene00008682 [details] [associations]
            symbol:lex-1 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
            [GO:0045132 "meiotic chromosome segregation" evidence=IMP]
            InterPro:IPR001487 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439 PRINTS:PR00503
            PROSITE:PS00674 PROSITE:PS50014 SMART:SM00297 SMART:SM00382
            GO:GO:0005524 GO:GO:0009792 GO:GO:0008406 GO:GO:0006351
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0045132 Gene3D:1.20.920.10
            SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 EMBL:Z68297
            EMBL:Z68316 EMBL:DQ140399 PIR:T20739 RefSeq:NP_001122768.1
            RefSeq:NP_001122769.1 RefSeq:NP_502289.2 UniGene:Cel.6917
            ProteinModelPortal:P54816 SMR:P54816 STRING:P54816 PaxDb:P54816
            EnsemblMetazoa:F11A10.1a.1 EnsemblMetazoa:F11A10.1a.2 GeneID:178146
            KEGG:cel:CELE_F11A10.1 UCSC:F11A10.1a CTD:178146 WormBase:F11A10.1a
            WormBase:F11A10.1b WormBase:F11A10.1c GeneTree:ENSGT00550000074694
            HOGENOM:HOG000154515 InParanoid:P54816 OMA:QDETENG NextBio:899910
            GO:GO:0031445 Uniprot:P54816
        Length = 1291

 Score = 247 (92.0 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A    PSI+F DEID +   R          I  T+L L+   DG D RG+V VI 
Sbjct:   481 LFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALM---DGLDGRGEVVVIG 537

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV--NLQELIMAK 118
             ATNR++TLDPAL RPGR DR++ F LPD   +R+I +IHTS+    + +   L  +    
Sbjct:   538 ATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERT 597

Query:   119 DDLSGADIKAICT 131
                 GAD+K +CT
Sbjct:   598 SGYCGADLKFLCT 610


>UNIPROTKB|P54816 [details] [associations]
            symbol:lex-1 "Tat-binding homolog 7" species:6239
            "Caenorhabditis elegans" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0031445 "regulation of heterochromatin assembly" evidence=IMP]
            InterPro:IPR001487 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439 PRINTS:PR00503
            PROSITE:PS00674 PROSITE:PS50014 SMART:SM00297 SMART:SM00382
            GO:GO:0005524 GO:GO:0009792 GO:GO:0008406 GO:GO:0006351
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0045132 Gene3D:1.20.920.10
            SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 EMBL:Z68297
            EMBL:Z68316 EMBL:DQ140399 PIR:T20739 RefSeq:NP_001122768.1
            RefSeq:NP_001122769.1 RefSeq:NP_502289.2 UniGene:Cel.6917
            ProteinModelPortal:P54816 SMR:P54816 STRING:P54816 PaxDb:P54816
            EnsemblMetazoa:F11A10.1a.1 EnsemblMetazoa:F11A10.1a.2 GeneID:178146
            KEGG:cel:CELE_F11A10.1 UCSC:F11A10.1a CTD:178146 WormBase:F11A10.1a
            WormBase:F11A10.1b WormBase:F11A10.1c GeneTree:ENSGT00550000074694
            HOGENOM:HOG000154515 InParanoid:P54816 OMA:QDETENG NextBio:899910
            GO:GO:0031445 Uniprot:P54816
        Length = 1291

 Score = 247 (92.0 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A    PSI+F DEID +   R          I  T+L L+   DG D RG+V VI 
Sbjct:   481 LFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALM---DGLDGRGEVVVIG 537

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV--NLQELIMAK 118
             ATNR++TLDPAL RPGR DR++ F LPD   +R+I +IHTS+    + +   L  +    
Sbjct:   538 ATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERT 597

Query:   119 DDLSGADIKAICT 131
                 GAD+K +CT
Sbjct:   598 SGYCGADLKFLCT 610


>POMBASE|SPCC965.04c [details] [associations]
            symbol:SPCC965.04c "mitochondrial inner membrane i-AAA
            protease complex subunit Yme1 (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0004176 "ATP-dependent peptidase
            activity" evidence=ISO] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
            membrane" evidence=ISO] [GO:0006515 "misfolded or incompletely
            synthesized protein catabolic process" evidence=ISO] [GO:0007005
            "mitochondrion organization" evidence=ISS] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0031942 "i-AAA complex" evidence=ISO]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC965.04c GO:GO:0016021 GO:GO:0005524 EMBL:CU329672
            GO:GO:0046872 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 GO:GO:0004176
            HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942 PIR:T41657
            RefSeq:NP_588514.1 ProteinModelPortal:O59824 SMR:O59824
            STRING:O59824 EnsemblFungi:SPCC965.04c.1 GeneID:2538746
            KEGG:spo:SPCC965.04c KO:K08955 OMA:LANANMS OrthoDB:EOG4FR40W
            NextBio:20799930 Uniprot:O59824
        Length = 709

 Score = 243 (90.6 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 57/130 (43%), Positives = 76/130 (58%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD----V 56
             LF  A + APSI+FIDE+DA+G KR   N+     +++T+ +LL  LDGF    D    V
Sbjct:   351 LFAAARKQAPSIIFIDELDAIGQKR---NARDAAHMRQTLNQLLVDLDGFSKNEDLAHPV 407

Query:    57 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIM 116
               I ATN  E+LDPAL RPGR DR I  PLPD + +  I   HT  + L +DV+L  +  
Sbjct:   408 VFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIAR 467

Query:   117 AKDDLSGADI 126
                  +GAD+
Sbjct:   468 GTSGFAGADL 477


>TAIR|locus:2057386 [details] [associations]
            symbol:ftsh4 "FTSH protease 4" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=ISS] [GO:0016020
            "membrane" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
            GO:GO:0009536 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
            GO:GO:0005743 GO:GO:0046872 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
            EMBL:AC004747 GO:GO:0004176 HOGENOM:HOG000217276 EMBL:AK220842
            IPI:IPI00534293 PIR:T02610 RefSeq:NP_565616.1 UniGene:At.23415
            ProteinModelPortal:O80983 SMR:O80983 STRING:O80983 MEROPS:M41.004
            PaxDb:O80983 PRIDE:O80983 EnsemblPlants:AT2G26140.1 GeneID:817154
            KEGG:ath:AT2G26140 GeneFarm:2508 TAIR:At2g26140 InParanoid:O80983
            OMA:HTEGALP PhylomeDB:O80983 ProtClustDB:CLSN2688437
            Genevestigator:O80983 Uniprot:O80983
        Length = 717

 Score = 243 (90.6 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/126 (42%), Positives = 78/126 (61%)

Query:     1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
             LF  A++ +P I+FIDEIDA+G  R   N   ++ ++ T+ ++L +LDGF     + V+ 
Sbjct:   311 LFSAAKKCSPCIIFIDEIDAIGGSR---NPKDQQYMKMTLNQMLVELDGFKQNEGIIVVA 367

Query:    61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
             ATN  E+LD AL+RPGR DR I  P PD + +R+I   H S++  AEDV+L  +      
Sbjct:   368 ATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPG 427

Query:   121 LSGADI 126
              SGAD+
Sbjct:   428 FSGADL 433

WARNING:  HSPs involving 424 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      131       131   0.00091  102 3  11 22  0.39    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  674
  No. of states in DFA:  515 (55 KB)
  Total size of DFA:  104 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  12.97u 0.07s 13.04t   Elapsed:  00:00:03
  Total cpu time:  13.00u 0.07s 13.07t   Elapsed:  00:00:04
  Start:  Thu Aug 15 16:57:56 2013   End:  Thu Aug 15 16:58:00 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	1.2e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	3.0e-62
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	4.8e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Bos taurus	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	6.2e-62
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	6.2e-62
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	6.2e-62
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	7.9e-62
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	1.3e-61
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	2.2e-59
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	3.6e-57
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	4.6e-57
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	2.5e-56
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	1.4e-55
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	1.4e-55
BLAST match view associations BLAST with RPT2 RPT2 RPT2	gene_product from Candida albicans	3.5e-52
BLAST match view associations BLAST with RPT2 RPT2 RPT2 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	3.5e-52
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-51
BLAST match view associations BLAST with C10G11.8 C10G11.8 C10G11.8	gene from Caenorhabditis elegans	3.8e-46
BLAST match view associations BLAST with Rpt3 Rpt3 Rpt3 Regulatory particle triple-A ATPase 3	protein from Drosophila melanogaster	2.8e-43
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Homo sapiens	3.2e-42
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Macaca fascicularis	3.2e-42
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein from Mus musculus	3.2e-42
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene from Rattus norvegicus	3.2e-42
BLAST match view associations BLAST with rpt-3 rpt-3 rpt-3	gene from Caenorhabditis elegans	1.4e-41
BLAST match view associations BLAST with Rpt3R Rpt3R Rpt3R Regulatory particle triple-A ATPase 3-related	protein from Drosophila melanogaster	2.2e-41
BLAST match view associations BLAST with psmc4 psmc4 psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene_product from Danio rerio	2.8e-41
BLAST match view associations BLAST with psmC4 psmC4 psmC4 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	5.9e-41
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Bos taurus	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Canis lupus familiaris	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.6e-40
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Sus scrofa	2.6e-40
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	protein from Mus musculus	2.6e-40
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	gene from Rattus norvegicus	2.6e-40
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 Proteasome (Prosome, macropain) 26S subunit, ATPase 3	protein from Rattus norvegicus	2.6e-40
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26s proteasome aaa-ATPase subunit Rpt3, putative	gene from Plasmodium falciparum	3.3e-40
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26S proteasome AAA-ATPase subunit RPT3, putative	protein from Plasmodium falciparum 3D7	3.3e-40
BLAST match view associations BLAST with RPT3 RPT3 RPT3 AT5G58290	protein from Arabidopsis thaliana	3.3e-40
BLAST match view associations BLAST with psmc3 psmc3 psmc3 proteasome (prosome, macropain) 26S subunit, ATPase, 3	gene_product from Danio rerio	3.3e-40
BLAST match view associations BLAST with psmC3 psmC3 psmC3 26S proteasome ATPase 3 subunit	gene from Dictyostelium discoideum	1.1e-39
BLAST match view associations BLAST with psmc3-b psmc3-b psmc3-b 26S protease regulatory subunit 6A-B	protein from Xenopus laevis	1.1e-39
BLAST match view associations BLAST with LOC100687152 LOC100687152 LOC100687152 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-39
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5	gene from Caenorhabditis elegans	1.8e-39
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5 Protein RPT-5	protein from Caenorhabditis elegans	1.8e-39
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	gene from Plasmodium falciparum	2.9e-39
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	2.9e-39
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	protein from Plasmodium falciparum 3D7	2.9e-39
BLAST match view associations BLAST with RPT5 RPT5 RPT5 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	3.7e-39
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	3.7e-39
BLAST match view associations BLAST with RPT5A RPT5A RPT5A regulatory particle triple-A ATPase 5A	protein from Arabidopsis thaliana	6.1e-39
BLAST match view associations BLAST with Rpt6 Rpt6 Rpt6 Regulatory particle triple-A ATPase 6	protein from Drosophila melanogaster	7.8e-39
BLAST match view associations BLAST with Rpt5 Rpt5 Rpt5 Regulatory particle triple-A ATPase 5	protein from Drosophila melanogaster	9.9e-39
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	1.6e-38
BLAST match view associations BLAST with RPT5B RPT5B RPT5B 26S proteasome AAA-ATPase subunit RPT5B	protein from Arabidopsis thaliana	2.6e-38
BLAST match view associations BLAST with PR26 PR26 PR26	gene_product from Candida albicans	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	1.5e-37
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	1.5e-37
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	1.5e-37
BLAST match view associations BLAST with PR26 PR26 PR26 Likely 26S proteasome regulatory particle ATPase Rpt3p	protein from Candida albicans SC5314	1.5e-37
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Uncharacterized protein	protein from Xenopus laevis	1.5e-37
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Uncharacterized protein	protein from Xenopus (Silurana) tropicalis	1.5e-37
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	1.5e-37
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	1.5e-37
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	1.5e-37
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	1.5e-37
BLAST match view associations BLAST with RPT6 RPT6 RPT6 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.9e-37
BLAST match view associations BLAST with RPT3 RPT3 RPT3 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	8.0e-37
BLAST match view associations BLAST with psmC5 psmC5 psmC5 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	1.0e-36
BLAST match view associations BLAST with psmc5 psmc5 psmc5 26S protease regulatory subunit 8	protein from Xenopus laevis	1.3e-36
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	1.3e-36
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	1.3e-36
BLAST match view associations BLAST with RPT5 RPT5 RPT5	gene_product from Candida albicans	2.1e-36
BLAST match view associations BLAST with psmC2 psmC2 psmC2 26S proteasome ATPase 2 subunit	gene from Dictyostelium discoideum	4.4e-36
BLAST match view associations BLAST with psmc3-a psmc3-a psmc3-a 26S protease regulatory subunit 6A-A	protein from Xenopus laevis	5.7e-36
BLAST match view associations BLAST with RPT1A RPT1A RPT1A regulatory particle triple-A 1A	protein from Arabidopsis thaliana	5.7e-36
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	9.2e-36
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	1.2e-35
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	1.2e-35
BLAST match view associations BLAST with PF13_0033 PF13_0033 PF13_0033 26S proteasome regulatory subunit, putative	gene from Plasmodium falciparum	3.1e-35