RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy522
(131 letters)
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 247 bits (632), Expect = 3e-84
Identities = 77/131 (58%), Positives = 104/131 (79%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F++A+E APSI+FIDEIDA+ KR D+ +GG+RE+QRT+++LL ++DGFD+RGDVK+I
Sbjct: 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 161
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPA++RPGR DR IE P PDEK + I IHT +M LAEDVNL+E+ +
Sbjct: 162 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEG 221
Query: 121 LSGADIKAICT 131
GA++KAICT
Sbjct: 222 CVGAELKAICT 232
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 163 bits (415), Expect = 1e-49
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
F AE++AP+I+FIDE+DA+ KR ++ ER R + +LL +DG R V V+
Sbjct: 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMA 345
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 121 LSGADIKAICT 131
GAD+ A+C+
Sbjct: 406 HVGADLAALCS 416
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 152 bits (387), Expect = 4e-47
Identities = 47/130 (36%), Positives = 80/130 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A + AP ++F DE+D++ R + G R + ++L ++DG ++ +V +I
Sbjct: 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 159
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + +DPA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L +
Sbjct: 160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 219
Query: 121 LSGADIKAIC 130
SGAD+ IC
Sbjct: 220 FSGADLTEIC 229
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 154 bits (392), Expect = 5e-45
Identities = 47/130 (36%), Positives = 80/130 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A + AP ++F DE+D++ R + G R + ++L ++DG ++ +V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + +DPA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L +
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 121 LSGADIKAIC 130
SGAD+ IC
Sbjct: 682 FSGADLTEIC 691
Score = 122 bits (308), Expect = 1e-33
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
F AE++AP+I+FIDE+DA+ KR ++ ER I +L L+ DG R V V+
Sbjct: 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM---DGLKQRAHVIVMA 345
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 121 LSGADIKAICT 131
GAD+ A+C+
Sbjct: 406 HVGADLAALCS 416
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 141 bits (358), Expect = 4e-43
Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F+ A+ AP ++F DE+DA+ +R D +G R + +LL ++DG ++R V ++
Sbjct: 95 VFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS---VRVVNQLLTEMDGLEARQQVFIMA 151
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHT---SRMTLAEDVNLQEL--I 115
ATNR + +DPA++RPGR+D+ + LP + I T ++ L DVNL+ +
Sbjct: 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211
Query: 116 MAKDDLSGADIKAIC 130
+ D +GAD+ A+
Sbjct: 212 LRCDCYTGADLSALV 226
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 133 bits (337), Expect = 5e-40
Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG---EREIQRTMLELLNQLDGFDSRGDVK 57
LF+ A AP IV+IDEIDAVG KR + SG E E +T+ +LL ++DG + V
Sbjct: 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEE--QTLNQLLVEMDGMGTTDHVI 147
Query: 58 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMA 117
V+ +TNR + LD AL+RPGR+DR + LP + +R IF H + L + +A
Sbjct: 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLA 207
Query: 118 KDD--LSGADIKAIC 130
+ SGADI IC
Sbjct: 208 ELTPGFSGADIANIC 222
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 128 bits (323), Expect = 1e-37
Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 20/144 (13%)
Query: 1 LFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGG--EREIQRTMLELLN-----QLDG 49
+R A E +FI+++DA + + + + T++ + + QL G
Sbjct: 87 RYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 146
Query: 50 FD---SRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA 106
V +I+ N TL LIR GR+++ P +++ + +
Sbjct: 147 MYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG------VCTGIFRT 200
Query: 107 EDVNLQELIMAKDDLSGADIKAIC 130
++V ++++ D+ G I
Sbjct: 201 DNVPAEDVVKIVDNFPGQSIDFFG 224
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 127 bits (321), Expect = 1e-37
Identities = 61/126 (48%), Positives = 78/126 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG KR GG E ++T+ +LL ++DGF+ + V+
Sbjct: 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 243
Query: 121 LSGADI 126
GAD+
Sbjct: 244 FVGADL 249
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 127 bits (320), Expect = 1e-37
Identities = 61/126 (48%), Positives = 78/126 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG KR GG E ++T+ +LL ++DGF+ + V+
Sbjct: 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 159
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 219
Query: 121 LSGADI 126
GAD+
Sbjct: 220 FVGADL 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 127 bits (320), Expect = 2e-37
Identities = 53/126 (42%), Positives = 80/126 (63%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A++ AP I+FIDEIDAVG +R GG E ++T+ ++L ++DGF+ + VI
Sbjct: 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 155
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR++ LPD + + +I +H R+ LA D++ +
Sbjct: 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 215
Query: 121 LSGADI 126
SGAD+
Sbjct: 216 FSGADL 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 125 bits (317), Expect = 6e-37
Identities = 60/130 (46%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG---EREIQRTMLELLNQLDGFDSRGD-V 56
LF A++ APSI+FIDEIDA+G R ERE +T+ +LL ++DGF S V
Sbjct: 95 LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDERE--QTLNQLLAEMDGFGSENAPV 152
Query: 57 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIM 116
V+ ATNR E LDPAL+RPGR DR++ PD + I +H + LA DVNLQE+
Sbjct: 153 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAK 212
Query: 117 AKDDLSGADI 126
L+GAD+
Sbjct: 213 LTAGLAGADL 222
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 121 bits (306), Expect = 7e-35
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVI 59
LF++A E+ PSI+FIDEID++ R ++ S R R E L Q+ G D + V+
Sbjct: 97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAAR---RIKTEFLVQMQGVGVDNDGILVL 153
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK 118
ATN LD A+ R R +++I PLP+ + +F +H + + + +EL
Sbjct: 154 GATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKT 211
Query: 119 DDLSGADIKAIC 130
D SGADI I
Sbjct: 212 DGYSGADISIIV 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 123 bits (311), Expect = 1e-34
Identities = 65/132 (49%), Positives = 79/132 (59%), Gaps = 12/132 (9%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG--EREIQRTMLELLNQL----DGFDSRG 54
LF A+ HAP IVFIDEIDAVG R GG ERE + LNQL DGFDS+
Sbjct: 100 LFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDERE------QTLNQLLVEMDGFDSKE 153
Query: 55 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQEL 114
+ V+ ATNR + LDPAL+RPGR D+KI PD +++I IHT LAEDVNL+ +
Sbjct: 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEII 213
Query: 115 IMAKDDLSGADI 126
GAD+
Sbjct: 214 AKRTPGFVGADL 225
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 120 bits (304), Expect = 1e-34
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVI 59
LF +A E+ PSI+FID++DA+ R + S R R ELL Q++G + V V+
Sbjct: 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASR---RIKTELLVQMNGVGNDSQGVLVL 158
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAK 118
ATN LD A+ R R +R+I PLPD + +F I+ + + + L
Sbjct: 159 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMT 216
Query: 119 DDLSGADIKAIC 130
+ SG+DI +
Sbjct: 217 EGYSGSDIAVVV 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 123 bits (311), Expect = 2e-34
Identities = 63/128 (49%), Positives = 79/128 (61%), Gaps = 4/128 (3%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG--EREIQRTMLELLNQLDGFDSRGDVKV 58
LF A+ HAP IVFIDEIDAVG KR GG ERE +T+ +LL ++DGF+ + V
Sbjct: 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE--QTLNQLLVEMDGFEKDTAIVV 172
Query: 59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 118
+ ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 173 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT 232
Query: 119 DDLSGADI 126
GAD+
Sbjct: 233 PGFVGADL 240
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 119 bits (300), Expect = 8e-34
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVI 59
LF +A E+ PSI+FID++DA+ R + S R R ELL Q++G + V V+
Sbjct: 135 LFAMARENKPSIIFIDQVDALTGTRGEGESEASR---RIKTELLVQMNGVGNDSQGVLVL 191
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAK 118
ATN LD A+ R R +R+I PLPD + +F I+ ++ + + L
Sbjct: 192 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMT 249
Query: 119 DDLSGADIKAIC 130
+ SG+DI +
Sbjct: 250 EGYSGSDIAVVV 261
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 118 bits (298), Expect = 5e-33
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVI 59
LF++A E+ PSI+FIDEID++ R ++ S R R E L Q+ G D + V+
Sbjct: 219 LFQLARENKPSIIFIDEIDSLCGSRSENESEAAR---RIKTEFLVQMQGVGVDNDGILVL 275
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK 118
ATN LD A+ R R +++I PLP+ + +F +H + + + QEL
Sbjct: 276 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKT 333
Query: 119 DDLSGADIKAIC 130
D SGADI I
Sbjct: 334 DGYSGADISIIV 345
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 115 bits (290), Expect = 1e-32
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD---VK 57
LF VA PSI+FIDE+D++ ++R S R R E L + DG D +
Sbjct: 105 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR---RLKTEFLVEFDGLPGNPDGDRIV 161
Query: 58 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIM 116
V+ ATNR + LD A +R R +++ LPDE+T+ + N + + L+ L
Sbjct: 162 VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219
Query: 117 AKDDLSGADIKAIC 130
D SG+D+ A+
Sbjct: 220 ITDGYSGSDLTALA 233
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 116 bits (291), Expect = 2e-32
Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTML-ELLNQLDGFDSRGD--VK 57
LF VA P+++FIDEID++ ++R GE E R + E L QLDG + + +
Sbjct: 168 LFAVARCQQPAVIFIDEIDSLLSQR----GDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223
Query: 58 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR-MTLAEDVNLQELIM 116
V+ ATNR + +D A R R+ +++ PLP+ +++I S+ + +++++
Sbjct: 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ 281
Query: 117 AKDDLSGADIKAIC 130
D SGAD+ +C
Sbjct: 282 QSDAFSGADMTQLC 295
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 114 bits (288), Expect = 7e-32
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD--VKV 58
LF VA E PSI+FID++D++ +R + R R E L + DG S GD V V
Sbjct: 199 LFAVARELQPSIIFIDQVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLV 255
Query: 59 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMA 117
+ ATNR + LD A++R R +++ LP+E+T+ + + + L +L
Sbjct: 256 MGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARM 313
Query: 118 KDDLSGADIKAIC 130
D SG+D+ A+
Sbjct: 314 TDGYSGSDLTALA 326
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 80.6 bits (200), Expect = 2e-21
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 82 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
P+E+ + I IH+ +M L +NL+++ SGA++K +CT
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 85.2 bits (211), Expect = 3e-21
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 10/133 (7%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVI 59
+F A + S V +D+I+ + G R + LL L +G + +I
Sbjct: 116 IFDDAYKSQLSCVVVDDIERLLDYV----PIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171
Query: 60 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELI-MAK 118
T+R + L + I +P+ T ++ +D + K
Sbjct: 172 GTTSRKDVLQ-EMEMLNAFSTTIH--VPNIATGEQLLEALELLGNF-KDKERTTIAQQVK 227
Query: 119 DDLSGADIKAICT 131
IK +
Sbjct: 228 GKKVWIGIKKLLM 240
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 75.6 bits (187), Expect = 2e-19
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 85 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
P P+E+ + I IH+ +M L +NL+++ SGA++K +CT
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 68.5 bits (168), Expect = 1e-16
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 88 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
D + KR IF+ TS+M L+E+V+L++ + D +SGADI +IC
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQ 45
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 63.1 bits (154), Expect = 1e-14
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 92 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
+R IF S+M+LA + +L LI+ D LSGA I AI
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 42
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 40.6 bits (96), Expect = 6e-06
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 88 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 131
D + + IF IH+ M++ + + + + +GA+++++CT
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 45
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 34.7 bits (79), Expect = 0.005
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 4 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN 63
V + ++FIDE + + + G E +E+L Q+ + R D+ VI+A
Sbjct: 125 VLKRAMGGVLFIDEAYYLYRPDNERDYGQE------AIEILLQVMENN-RDDLVVILAGY 177
Query: 64 RIETLDPALIRPG---RIDRKIEFPL--PDEKTKRRIFNIHTSRMTLAED 108
+ PG RI IEFP +E + + + +
Sbjct: 178 ADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.024
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 59/170 (34%)
Query: 1 LFRV---AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTML--------ELLNQLDG 49
LF + E P+ I DS E + ML ++ + ++
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILE------DSLENNE-GVPSPMLSISNLTQEQVQDYVNK 355
Query: 50 FDSR--GDVKVIMA-----TNRI--------ETLDPAL----IRPG----RI---DRKIE 83
+S +V ++ N + L+ L G RI +RK++
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 84 FP---LPDEKTKRRI---FNIHTSRMTLAEDVNLQELIMAKDDLSGADIK 127
F LP + F H+ + A D+ ++L+ + DI+
Sbjct: 416 FSNRFLP-------VASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Score = 27.7 bits (61), Expect = 1.5
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 37/135 (27%)
Query: 1 LFRVAEEHAPSIV-F-IDEIDAVGTKRYDSNSGGE--REIQRTMLELLNQLDGFDSRGDV 56
++ A+ H F I +I + GGE + I+ ++ F++ D
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIVD- 1698
Query: 57 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIM 116
G++ + F +E + F ++ + Q +
Sbjct: 1699 -------------------GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ--FTQPALT 1737
Query: 117 AKDDLSGA---DIKA 128
+ A D+K+
Sbjct: 1738 L---MEKAAFEDLKS 1749
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1
PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_A* 2o01_A* 2wsc_A* 2wse_A* 2wsf_A*
3lw5_A*
Length = 755
Score = 30.1 bits (67), Expect = 0.22
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 55 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 99
V+V++ + + T +PG DR + +T I+N+H
Sbjct: 11 KVRVVVDNDPVPTSFEKWAKPGHFDRTLA---RGPQTTTWIWNLH 52
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 29.2 bits (66), Expect = 0.34
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 12 IVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELL 44
IVFIDEID + K S + RE +QR +L L+
Sbjct: 119 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 27.6 bits (61), Expect = 1.6
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 14/50 (28%)
Query: 32 GEREIQRTMLELLN------QLDG--FDS------RGDVKVIMATNRIET 67
+ L QL+ +D+ GD ++ T+ E
Sbjct: 419 SVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEM 468
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 26.1 bits (57), Expect = 4.3
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 22/112 (19%)
Query: 10 PSIVFIDEIDAVGTKRYDSNSGG---------------EREIQ----RTMLELLNQLDGF 50
V+ E+ + ++ GG + Q ++ E L + +
Sbjct: 127 TKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK-ERV 185
Query: 51 DSRGDVKVIMATNRIETLDPALIRPGRIDRKIE--FPLPDEKTKRRIFNIHT 100
++ + + + ++ D + E PLP ++ I
Sbjct: 186 EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQD 237
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 26.0 bits (58), Expect = 4.5
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 80 RKIEFPLPDEKTKR-RIFNIHTSRM-TLAEDVNLQELIMAKDDLSGADI 126
+ I L + N SR + ++N L A+ L DI
Sbjct: 130 KGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDI 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 25.6 bits (56), Expect = 5.9
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 27/124 (21%)
Query: 10 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 69
++ +DE+D + SGG+R + + + +I+ N E
Sbjct: 149 HFVIIMDEVDGM--------SGGDRGGVGQLAQFC-------RKTSTPLILICN--ERNL 191
Query: 70 PALIRPGR-IDRKIEF-PLPDEKTKRRIFNI-HTSRMTLAEDVNLQELIMAKDDLSGADI 126
P +RP + I+F K R+ I + L +V + LI + DI
Sbjct: 192 PK-MRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLI----QTTRGDI 245
Query: 127 -KAI 129
+ I
Sbjct: 246 RQVI 249
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 25.2 bits (55), Expect = 7.5
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 14/50 (28%)
Query: 32 GEREIQRTMLELLN------QLDG--FDS------RGDVKVIMATNRIET 67
+ + L QL+ +D+ GD ++ T+ E
Sbjct: 199 SVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEM 248
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 25.3 bits (55), Expect = 8.4
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 14/50 (28%)
Query: 32 GEREIQRTMLELLN------QLDG--FDS------RGDVKVIMATNRIET 67
+ L QL FD+ D ++ T+ E
Sbjct: 364 SIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEM 413
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.384
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,082,735
Number of extensions: 122385
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 56
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)