RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy522
(131 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 161 bits (410), Expect = 1e-51
Identities = 53/131 (40%), Positives = 81/131 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A++ AP I+FIDEIDAVG +R GG E ++T+ ++L ++DGF+ + VI
Sbjct: 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 155
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR++ LPD + + +I +H R+ LA D++ +
Sbjct: 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 215
Query: 121 LSGADIKAICT 131
SGAD+ +
Sbjct: 216 FSGADLANLVN 226
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 159 bits (403), Expect = 9e-51
Identities = 61/131 (46%), Positives = 80/131 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
LF A+ HAP IVFIDEIDAVG KR GG E ++T+ +LL ++DGF+ + V+
Sbjct: 93 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 152
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L
Sbjct: 153 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 212
Query: 121 LSGADIKAICT 131
GAD++ +
Sbjct: 213 FVGADLENLLN 223
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 117 bits (294), Expect = 3e-34
Identities = 47/131 (35%), Positives = 80/131 (61%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+F A + AP ++F DE+D++ R + G R + ++L ++DG ++ +V +I
Sbjct: 92 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 151
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 120
ATNR + +DPA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L +
Sbjct: 152 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 211
Query: 121 LSGADIKAICT 131
SGAD+ IC
Sbjct: 212 FSGADLTEICQ 222
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 90.9 bits (225), Expect = 1e-23
Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 12/128 (9%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 60
+ R +H ++ ID + V + + G R +LL+ + + VI
Sbjct: 176 IARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGIS--RGAFDLLSDIGAMAASRGCVVIA 231
Query: 61 ATNRIE---TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-----TLAEDVNLQ 112
+ N + + R + D + ++ + TL
Sbjct: 232 SLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEH 291
Query: 113 ELIMAKDD 120
++
Sbjct: 292 SVLTIHTS 299
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 77.8 bits (190), Expect = 4e-19
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 61
F AE++AP+I+FIDE+DA+ KR ++ +R + +LL +DG R V V+ A
Sbjct: 90 FEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQRAHVIVMAA 146
Query: 62 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL 121
TNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 147 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 206
Query: 122 SGADIKAICT 131
GAD+ A+C+
Sbjct: 207 VGADLAALCS 216
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 57.4 bits (138), Expect = 2e-11
Identities = 14/128 (10%), Positives = 28/128 (21%), Gaps = 16/128 (12%)
Query: 5 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 64
PS I+ +D + S + + I+ N
Sbjct: 216 ESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPP----------GIVTMNE 265
Query: 65 IETLDPALIRPGRIDRKIEFPLPDEKTK-RRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 123
R ++I+F D + + + L+M
Sbjct: 266 ---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII--QSGIALLLMLIWYRPV 320
Query: 124 ADIKAICT 131
A+
Sbjct: 321 AEFAQSIQ 328
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 52.6 bits (125), Expect = 7e-10
Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 10/130 (7%)
Query: 2 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKV-IM 60
F A + S V +D+I+ + R + LL L +G + I
Sbjct: 93 FDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIG 148
Query: 61 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELI-MAKD 119
T+R + L + I P+ T ++ +D + K
Sbjct: 149 TTSRKDVLQEMEML-NAFSTTIHV--PNIATGEQLLEALELLGNF-KDKERTTIAQQVKG 204
Query: 120 DLSGADIKAI 129
IK +
Sbjct: 205 KKVWIGIKKL 214
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 50.3 bits (119), Expect = 6e-09
Identities = 11/139 (7%), Positives = 32/139 (23%), Gaps = 11/139 (7%)
Query: 1 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLEL--------LNQLDGFDS 52
+ + ++ + G R + ++
Sbjct: 86 VVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAV 145
Query: 53 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQ 112
+ R ET+ R K + + + +H + + + +
Sbjct: 146 PKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNR 205
Query: 113 ELIMAKDDLSGADIKAICT 131
E + S + +I
Sbjct: 206 EGVKL---YSSLETPSISP 221
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 40.2 bits (93), Expect = 2e-05
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 8 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN---- 63
IVFIDEID + K S + RE +LL ++G ++ +
Sbjct: 114 EQNGIVFIDEIDKICKKGEYSGADVSRE--GVQRDLLPLVEGSTVSTKHGMVKTDHILFI 171
Query: 64 ---RIETLDPALIRP---GRIDRKIEFPLPDEKTKRRIFNIHTSRMT 104
+ P+ + P GR+ ++E RI + +T
Sbjct: 172 ASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 218
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 26.2 bits (57), Expect = 1.0
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 12 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA 71
+ IDE+ + + + +T+ E VK ++AT + L
Sbjct: 118 VYLIDEVHML-------SRHSFNALLKTLEE---------PPEHVKFLLATTDPQKLPVT 161
Query: 72 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMA 117
++ + L E+ + ++ +I E LQ L A
Sbjct: 162 ILSR--CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 205
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus
elongatus [TaxId: 32046]}
Length = 743
Score = 26.3 bits (58), Expect = 1.3
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 57 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 99
+V++ + + T +PG DR + +T I+N+H
Sbjct: 1 RVVVDNDPVPTSFEKWAKPGHFDRTLA---RGPQTTTWIWNLH 40
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV
(Porcine reproductive and respiratory syndrome virus)
[TaxId: 28344]}
Length = 57
Score = 23.0 bits (49), Expect = 6.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 71 ALIRPGRIDRKIEFPLPDEKTKRRI 95
L GRI +EF LP T R I
Sbjct: 30 TLSDSGRISYTVEFSLPTHHTVRLI 54
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 23.2 bits (50), Expect = 8.9
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 16/65 (24%)
Query: 24 KRYDSNSGGE--REIQR--------TMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 73
KRY + E EI ++N+L + K+ MA + L+P
Sbjct: 17 KRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLER----KITMA--KAYLLNPEDY 70
Query: 74 RPGRI 78
PG
Sbjct: 71 SPGET 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.384
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,827
Number of extensions: 21851
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 17
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)