BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5220
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9Y|B Chain B, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 304
Score = 339 bits (870), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 151/262 (57%), Positives = 206/262 (78%)
Query: 20 KKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGE 79
K SIP+G+W KC SC +LY+ +L+ N +VC KCD+HM++ AR+RL++ LD+ + E+G
Sbjct: 16 KASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGSLVELGS 75
Query: 80 NILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMG 139
+ P D L F+D+ KY +RL A+K T E DAL+V+KG++ +P+V A FEF FMGGSMG
Sbjct: 76 ELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMG 135
Query: 140 SVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFI 199
SVVG RF++ + +LE P +C +A+GGARMQE L+SLMQMAKT+A L K+ ++ +P+I
Sbjct: 136 SVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYI 195
Query: 200 SVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLPDGFQSSEFLLKKG 259
SVLT+PTMGGVSASFA +GD+ IAEP ALIGFAGPRVI+ TV+EKLP GFQ SEFL++KG
Sbjct: 196 SVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKG 255
Query: 260 ALDMIIDRRKLRFKIANLLALL 281
A+DMI+ R ++R K+A++LA L
Sbjct: 256 AIDMIVRRPEMRLKLASILAKL 277
>pdb|2F9I|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|D Chain D, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 285
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 168/279 (60%), Gaps = 8/279 (2%)
Query: 5 KNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDR 64
K Y KNN +P G+ KC CK I+Y +L N VC CD+H+ + A R
Sbjct: 12 KKYLTVQDSKNN-----DVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKR 66
Query: 65 LNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPL 124
+ D+ +F E + + + L+F Y E+++ ++ T +A++ + +
Sbjct: 67 IEAISDEGSFTEFDKGMTSANPLDFP---SYLEKIEKDQQKTGLKEAVVTGTAQLDGMKF 123
Query: 125 VVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKT 184
VAV + F GSMGSV+GE+ + E ++PF+ +A+GGARMQEG++SLMQM KT
Sbjct: 124 GVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKT 183
Query: 185 TAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEK 244
+ L + S + +IS LT+PT GGVSASFA +GDI ++EP ALIGFAG RVI+ T+ EK
Sbjct: 184 SVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEK 243
Query: 245 LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQK 283
LPD FQ++EFLL+ G LD ++ R +R ++ +L + Q+
Sbjct: 244 LPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQE 282
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 56 HMQIK--ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALI 113
H Q K AR+RLNN LD ++F E+G F+ K+ L K D ++
Sbjct: 39 HSQGKQTARERLNNLLDPHSFDEVGA---------FR---KHRTTLFGMDKAVVPADGVV 86
Query: 114 VIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQE 173
+G+I+ P+ A +F MGGS G + ++ + +L PF+ +GGAR+QE
Sbjct: 87 TGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQE 146
Query: 174 GLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAG 233
G+ SL K KLS +P I+++ P GG S S A D +I A + G
Sbjct: 147 GIDSLSGYGKMFFANVKLS-GVVPQIAIIAGPCAGGASYSPALT-DFIIMTKKAHMFITG 204
Query: 234 PRVIKNTVKEKL 245
P+VIK+ E +
Sbjct: 205 PQVIKSVTGEDV 216
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R++ LD+ +F E+ E T NF N D ++ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDEFARHRST-NFG-----------LDANRPYGDGVVTGYG 92
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
++ P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S IP IS++ P GG S A V+ + + + GP VI
Sbjct: 153 LGAYGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 238 KNTVKEKLPDGFQ 250
K E + GF+
Sbjct: 212 KTVTGEDV--GFE 222
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R++ LD+ +F E+ E T NF N D ++ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDEFARHRST-NFG-----------LDANRPYGDGVVTGYG 92
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
++ P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S IP IS++ P GG S A V+ + + + GP VI
Sbjct: 153 LGAYGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 238 KNTVKEKLPDGFQ 250
K E + GF+
Sbjct: 212 KTVTGEDV--GFE 222
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R++ LD+ +F E+ E T NF N D ++ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDEFARHRST-NFG-----------LDANRPYGDGVVTGYG 92
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
++ P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S IP IS++ P GG S A V+ + + + GP VI
Sbjct: 153 LGAYGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 238 KNTVKEKLPDGFQ 250
K E + GF+
Sbjct: 212 KTVTGEDV--GFE 222
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R++ LD+ +F E+ E T NF N D ++ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDEFARHRST-NFG-----------LDANRPYGDGVVTGYG 92
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
++ P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S IP IS++ P GG S A V+ + + + GP VI
Sbjct: 153 LGAYGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 238 KNTVKEKLPDGFQ 250
K E + GF+
Sbjct: 212 KTVTGEDV--GFE 222
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R++ LD+ +F E+ E T NF N D ++ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDEFARHRST-NFG-----------LDANRPYGDGVVTGYG 92
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
++ P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S IP IS++ P GG S A V+ + + + GP VI
Sbjct: 153 LGAYGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 238 KNTVKEKLPDGFQ 250
K E + GF+
Sbjct: 212 KTVTGEDV--GFE 222
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R++ LD+ +F E+ E T NF N D ++ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDEFARHRST-NFG-----------LDANRPYGDGVVTGYG 92
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
++ P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S IP IS++ P GG S A V+ + + + GP VI
Sbjct: 153 LGAYGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 238 KNTVKEKLPDGFQ 250
K E + GF+
Sbjct: 212 KTVTGEDV--GFE 222
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ A +RL LD F EI + + +T D +K D +I G
Sbjct: 46 KLTAWERLELLLDPGTFVEIDKFVEHRNTYFGLDKVKLPR------------DGVITGVG 93
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
I + V +F GGS+G ++ ++ ++L+ IP + I +GGAR+QEG+ +
Sbjct: 94 EINGRKVAVFSQDFTVXGGSLGEXHAKKIVKLLDLALKXGIPVIGINDSGGARIQEGVDA 153
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + + L+ +P I+V+ P GG S A IV + A GP VI
Sbjct: 154 LAGYGEIF-LRNTLASGVVPQITVIAGPCAGGAVYSPALTDFIVXVDQTARXFITGPNVI 212
Query: 238 KNTVKEKL 245
K E++
Sbjct: 213 KAVTGEEI 220
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 21/192 (10%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTL--NFKDNIKYSERLKLAKKNTNETDALIVI 115
++ AR+R+ LD+++F E+ D L + N E+ L D ++
Sbjct: 56 KLTARERIYALLDEDSFVEL-------DALAKHRSTNFNLGEKRPLG-------DGVVTG 101
Query: 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGL 175
G+I + + + GGS+G V GE+ ++ +++++ P + I GAR+QEG+
Sbjct: 102 YGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGV 161
Query: 176 LSLMQMAKTTAILTK--LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAG 233
+SL ++ I L+ IP IS++ GG S A +++ + + + G
Sbjct: 162 VSLGLYSR---IFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITG 218
Query: 234 PRVIKNTVKEKL 245
P VIK E++
Sbjct: 219 PDVIKTVTGEEV 230
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 21/192 (10%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTL--NFKDNIKYSERLKLAKKNTNETDALIVI 115
++ AR+R+ LD+++F E+ D L + N E+ L D ++
Sbjct: 56 KLTARERIYALLDEDSFVEL-------DALAKHRSTNFNLGEKRPLG-------DGVVTG 101
Query: 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGL 175
G+I + + + GGS+G V GE+ ++ +++++ P + I GAR+QEG+
Sbjct: 102 YGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGV 161
Query: 176 LSLMQMAKTTAILTK--LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAG 233
+SL ++ I L+ IP IS++ GG S A +++ + + + G
Sbjct: 162 VSLGLYSR---IFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITG 218
Query: 234 PRVIKNTVKEKL 245
P VIK E++
Sbjct: 219 PDVIKTVTGEEV 230
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 14/189 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+RL D F+EI + F + L K+ D ++ G
Sbjct: 39 KLTARERLALLFDDGKFNEI---------MTFATT--RATEFGLDKQRFY-GDGVVTGWG 86
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
+ + +F +GGS+G + ++ +++L+ P V I +GGAR+QEG LS
Sbjct: 87 KVDGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQEGALS 146
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGF-AGPRV 236
L + ++ IP I+++ P GG S A I++ + A F GP +
Sbjct: 147 LEGYGAVFK-MNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEI 205
Query: 237 IKNTVKEKL 245
K + E++
Sbjct: 206 TKVVLGEEV 214
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|D Chain D, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|F Chain F, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|H Chain H, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|J Chain J, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|L Chain L, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 531
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDT-LNFKDNIKYSERLKLAKKNTNETDALIVIK 116
++ AR+R++ LD+ +F E + T N +D D ++
Sbjct: 53 KLTARERVDLLLDEGSFEEFDMFVTHRCTDFNMQDQKPAG-------------DGVVTGW 99
Query: 117 GSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLL 176
G+I + V +F +GGS+ ++ + ++++ P + I +GGAR+QEG+
Sbjct: 100 GTINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVD 159
Query: 177 SLMQMAKTTAILTK--LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGP 234
SL A + + ++ +P IS++ P GG S A I + + + + GP
Sbjct: 160 SL---AGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGP 216
Query: 235 RVIKNTVKEKL 245
V+K E++
Sbjct: 217 DVVKTVTNEQV 227
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc), Beta Subunit
pdb|3U9S|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|D Chain D, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|F Chain F, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|H Chain H, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|J Chain J, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|L Chain L, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 555
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 19/185 (10%)
Query: 62 RDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMN 121
R+R+N LD G L + L + Y E + A ++ G +
Sbjct: 77 RERINRLLDP------GSPFLELSALAAHE--VYGEEVAAA--------GIVAGIGRVEG 120
Query: 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA---RMQEGLLSL 178
+ ++ + GG+ + ++ ++ I+LE ++P + + +GGA R E
Sbjct: 121 VECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDR 180
Query: 179 MQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIK 238
+ +S + IP I+V+ G + A + V+ A I AGP ++K
Sbjct: 181 EHFGRIFFNQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVK 240
Query: 239 NTVKE 243
E
Sbjct: 241 AATGE 245
>pdb|2ZAE|A Chain A, Crystal Structure Of Protein Ph1601p In Complex With
Protein Ph1771p Of Archaeal Ribonuclease P From
Pyrococcus Horikoshii Ot3
pdb|2ZAE|C Chain C, Crystal Structure Of Protein Ph1601p In Complex With
Protein Ph1771p Of Archaeal Ribonuclease P From
Pyrococcus Horikoshii Ot3
Length = 127
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 NETDALIVIKGS-IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQK 157
+ET ++VI G I +P V++FEFE G+ + GER + ++ L+++
Sbjct: 72 DETRNMLVIAGDRIWKVPKDVSIFEFEADDGTKIKIPGERLVGRPEMRLKKR 123
>pdb|1V76|A Chain A, Crystal Structure Of Archaeal Ribonuclease P Protein
Ph1771p From Pyrococcus Horikoshii Ot3
pdb|1V76|B Chain B, Crystal Structure Of Archaeal Ribonuclease P Protein
Ph1771p From Pyrococcus Horikoshii Ot3
Length = 96
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 NETDALIVIKGS-IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQK 157
+ET ++VI G I +P V++FEFE G+ + GER + ++ L+++
Sbjct: 41 DETRNMLVIAGDRIWKVPKDVSIFEFEADDGTKIKIPGERLVGRPEMRLKKR 92
>pdb|2KI7|A Chain A, The Solution Structure Of Rpp29-Rpp21 Complex From
Pyrococcus Furiosus
Length = 127
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 107 NETDALIVIKGS--IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQK 157
+ET ++VI G + +P V +FEFE G+ + GE+ + ++ L+++
Sbjct: 72 DETRNMLVIAGENKVWKVPKDVCIFEFETWDGTKIKISGEKLVGRPEMRLKKR 124
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 99 LKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKI 158
L L + + +++I GSI N V A F+ G V R QG E I
Sbjct: 324 LSLMTREKHPDGKILIIGGSIANFTNVAATFK--------GIVRAIRDYQGPLKEHEVTI 375
Query: 159 PFVCITATGGARMQEGLLSLMQMAKTTAI 187
FV GG QEGL + ++ KTT I
Sbjct: 376 -FV---RRGGPNYQEGLRVMGEVGKTTGI 400
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 99 LKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKI 158
L L + + +++I GSI N V A F+ G V R QG E I
Sbjct: 324 LSLMTREKHPDGKILIIGGSIANFTNVAATFK--------GIVRAIRDYQGPLKEHEVTI 375
Query: 159 PFVCITATGGARMQEGLLSLMQMAKTTAI 187
FV GG QEGL + ++ KTT I
Sbjct: 376 -FV---RRGGPNYQEGLRVMGEVGKTTGI 400
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 99 LKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKI 158
L L + + +++I GSI N V A F+ G V R QG E I
Sbjct: 324 LSLXTREKHPDGKILIIGGSIANFTNVAATFK--------GIVRAIRDYQGPLKEHEVTI 375
Query: 159 PFVCITATGGARMQEGLLSLMQMAKTTAI 187
FV GG QEGL ++ KTT I
Sbjct: 376 -FV---RRGGPNYQEGLRVXGEVGKTTGI 400
>pdb|4F1I|A Chain A, Crystal Structure Of Semet Tdp2 From Caenorhabditis
Elegans
Length = 362
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 212 ASFAFMGD----IVIAEPGALIGFAGPRVIKNTVKEKLPDGFQSS 252
A F F D I+ PGAL+ F G +++ ++PDG + +
Sbjct: 245 AQFGFCXDKVREIIAQNPGALVFFGGDLNLRDEEVSRVPDGVKDA 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,989,381
Number of Sequences: 62578
Number of extensions: 310298
Number of successful extensions: 714
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 24
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)