Query psy5220
Match_columns 286
No_of_seqs 229 out of 1853
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 20:27:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0777 AccD Acetyl-CoA carbox 100.0 1.4E-85 3E-90 580.4 25.2 285 1-285 1-285 (294)
2 TIGR00515 accD acetyl-CoA carb 100.0 7.7E-80 1.7E-84 560.6 28.5 282 1-284 1-282 (285)
3 PRK05654 acetyl-CoA carboxylas 100.0 1.6E-79 3.4E-84 560.8 27.8 284 1-285 1-284 (292)
4 CHL00174 accD acetyl-CoA carbo 100.0 4.2E-77 9E-82 540.8 27.2 262 21-282 31-294 (296)
5 TIGR01117 mmdA methylmalonyl-C 100.0 6.5E-44 1.4E-48 349.5 22.0 221 50-284 22-246 (512)
6 TIGR03133 malonate_beta malona 100.0 1.8E-42 3.8E-47 313.2 24.3 211 56-280 3-232 (274)
7 PRK07189 malonate decarboxylas 100.0 1.8E-42 3.8E-47 316.3 21.9 214 54-282 10-240 (301)
8 PLN02820 3-methylcrotonyl-CoA 100.0 1.2E-42 2.7E-47 342.4 21.4 217 50-283 73-296 (569)
9 COG4799 Acetyl-CoA carboxylase 100.0 1E-40 2.2E-45 321.6 16.9 218 50-284 34-255 (526)
10 PF01039 Carboxyl_trans: Carbo 100.0 8.5E-41 1.8E-45 327.4 16.5 213 54-282 3-221 (493)
11 TIGR01117 mmdA methylmalonyl-C 100.0 4.6E-37 1E-41 301.1 23.6 208 46-284 267-498 (512)
12 KOG0540|consensus 100.0 7.9E-38 1.7E-42 291.7 15.5 211 46-285 301-525 (536)
13 COG4799 Acetyl-CoA carboxylase 100.0 2.3E-35 4.9E-40 284.6 17.3 232 22-285 251-512 (526)
14 PRK12319 acetyl-CoA carboxylas 100.0 4.3E-34 9.3E-39 257.1 21.7 207 50-282 8-238 (256)
15 TIGR00513 accA acetyl-CoA carb 100.0 6.2E-33 1.3E-37 254.9 22.5 203 36-266 49-266 (316)
16 CHL00198 accA acetyl-CoA carbo 100.0 2.8E-33 6.1E-38 257.2 20.0 212 27-266 43-269 (322)
17 PLN02820 3-methylcrotonyl-CoA 100.0 5E-33 1.1E-37 274.4 22.5 204 46-285 323-558 (569)
18 PRK05724 acetyl-CoA carboxylas 100.0 6.1E-33 1.3E-37 255.2 20.5 213 27-267 40-267 (319)
19 PF01039 Carboxyl_trans: Carbo 100.0 4.7E-33 1E-37 272.8 19.4 207 47-284 247-481 (493)
20 PLN03230 acetyl-coenzyme A car 100.0 2E-32 4.2E-37 257.0 21.0 205 35-267 118-337 (431)
21 PLN03229 acetyl-coenzyme A car 100.0 2.8E-31 6.1E-36 262.2 19.7 195 47-267 149-358 (762)
22 KOG0540|consensus 100.0 4.3E-32 9.3E-37 253.4 8.1 226 42-283 47-279 (536)
23 TIGR03134 malonate_gamma malon 100.0 8.6E-29 1.9E-33 220.6 22.9 188 61-282 2-207 (238)
24 COG0825 AccA Acetyl-CoA carbox 100.0 9.3E-28 2E-32 214.5 13.8 206 34-267 46-266 (317)
25 PRK08150 enoyl-CoA hydratase; 99.6 1.7E-13 3.6E-18 124.1 17.1 159 124-284 12-197 (255)
26 PF06833 MdcE: Malonate decarb 99.5 1.4E-13 2.9E-18 121.6 13.5 156 108-266 15-186 (234)
27 PRK06143 enoyl-CoA hydratase; 99.5 4E-13 8.7E-18 121.7 17.1 160 124-284 17-204 (256)
28 PRK08139 enoyl-CoA hydratase; 99.5 4.2E-13 9.2E-18 122.2 16.9 161 123-284 20-208 (266)
29 TIGR02280 PaaB1 phenylacetate 99.5 5.2E-13 1.1E-17 120.8 17.3 160 124-284 9-198 (256)
30 PRK05995 enoyl-CoA hydratase; 99.5 3.9E-13 8.4E-18 122.0 16.5 161 123-284 13-203 (262)
31 PRK05862 enoyl-CoA hydratase; 99.5 4.7E-13 1E-17 121.2 16.9 164 119-284 10-199 (257)
32 PRK08140 enoyl-CoA hydratase; 99.5 6E-13 1.3E-17 120.8 17.5 164 119-284 10-204 (262)
33 PRK08258 enoyl-CoA hydratase; 99.5 6E-13 1.3E-17 121.8 17.3 164 119-284 23-219 (277)
34 PRK09674 enoyl-CoA hydratase-i 99.5 5.9E-13 1.3E-17 120.5 16.9 160 124-284 12-197 (255)
35 PRK06023 enoyl-CoA hydratase; 99.5 6.2E-13 1.3E-17 120.0 16.9 161 123-284 15-202 (251)
36 PRK07938 enoyl-CoA hydratase; 99.5 4.9E-13 1.1E-17 120.6 16.2 159 124-284 12-196 (249)
37 PRK05674 gamma-carboxygeranoyl 99.5 6.4E-13 1.4E-17 120.9 17.0 161 123-284 15-205 (265)
38 PRK09120 p-hydroxycinnamoyl Co 99.5 5.2E-13 1.1E-17 122.1 16.5 161 123-284 17-209 (275)
39 PRK07396 dihydroxynaphthoic ac 99.5 6E-13 1.3E-17 121.6 16.8 161 123-284 22-212 (273)
40 PRK06190 enoyl-CoA hydratase; 99.5 6.9E-13 1.5E-17 120.3 16.8 160 124-284 14-199 (258)
41 PRK07327 enoyl-CoA hydratase; 99.5 7.4E-13 1.6E-17 120.7 17.0 161 123-284 21-211 (268)
42 PRK08138 enoyl-CoA hydratase; 99.5 8.8E-13 1.9E-17 119.7 17.4 162 122-284 16-203 (261)
43 PRK09076 enoyl-CoA hydratase; 99.5 8.8E-13 1.9E-17 119.5 17.2 159 124-284 13-200 (258)
44 PLN02600 enoyl-CoA hydratase 99.5 9.7E-13 2.1E-17 118.8 17.2 160 124-284 5-193 (251)
45 PRK11423 methylmalonyl-CoA dec 99.5 6.6E-13 1.4E-17 120.6 16.1 160 124-284 14-201 (261)
46 PRK05981 enoyl-CoA hydratase; 99.5 8E-13 1.7E-17 120.2 16.7 161 123-284 13-208 (266)
47 PRK07468 enoyl-CoA hydratase; 99.5 1.1E-12 2.4E-17 119.2 17.5 161 123-284 14-204 (262)
48 PRK05869 enoyl-CoA hydratase; 99.5 1.2E-12 2.7E-17 116.1 17.3 159 124-284 18-204 (222)
49 PRK06495 enoyl-CoA hydratase; 99.5 1.1E-12 2.3E-17 118.9 17.1 159 124-284 14-199 (257)
50 TIGR03210 badI 2-ketocyclohexa 99.5 6.5E-13 1.4E-17 120.3 15.7 161 123-284 11-199 (256)
51 PRK06144 enoyl-CoA hydratase; 99.5 1.1E-12 2.5E-17 119.1 17.2 164 119-284 14-208 (262)
52 PLN02664 enoyl-CoA hydratase/d 99.5 1.1E-12 2.3E-17 120.1 17.1 162 122-284 16-217 (275)
53 PRK06142 enoyl-CoA hydratase; 99.5 1.1E-12 2.4E-17 119.7 17.1 160 124-284 16-215 (272)
54 PRK07659 enoyl-CoA hydratase; 99.5 6.9E-13 1.5E-17 120.3 15.4 160 123-284 15-202 (260)
55 PRK07260 enoyl-CoA hydratase; 99.5 1.3E-12 2.8E-17 118.2 16.9 161 123-284 11-203 (255)
56 PRK05980 enoyl-CoA hydratase; 99.5 1.1E-12 2.3E-17 119.0 16.4 160 124-284 13-205 (260)
57 PRK05864 enoyl-CoA hydratase; 99.5 1.2E-12 2.5E-17 119.8 16.7 161 123-284 19-215 (276)
58 PRK06494 enoyl-CoA hydratase; 99.5 9.5E-13 2.1E-17 119.3 15.9 161 123-284 13-199 (259)
59 TIGR01929 menB naphthoate synt 99.5 1E-12 2.3E-17 119.1 16.2 160 124-284 13-202 (259)
60 PRK06127 enoyl-CoA hydratase; 99.5 1.6E-12 3.5E-17 118.5 17.3 161 123-284 20-211 (269)
61 PRK07657 enoyl-CoA hydratase; 99.5 1.5E-12 3.2E-17 118.1 16.7 161 123-284 13-202 (260)
62 PRK06563 enoyl-CoA hydratase; 99.5 1.4E-12 3E-17 118.0 16.5 161 123-284 8-197 (255)
63 KOG1680|consensus 99.5 2.9E-13 6.4E-18 121.3 11.8 164 121-285 44-233 (290)
64 PRK08252 enoyl-CoA hydratase; 99.5 1.2E-12 2.7E-17 118.3 16.1 160 123-284 12-196 (254)
65 PF00378 ECH: Enoyl-CoA hydrat 99.5 8.7E-13 1.9E-17 118.3 15.0 160 124-284 8-195 (245)
66 PRK06688 enoyl-CoA hydratase; 99.5 9.2E-13 2E-17 119.2 15.3 161 123-284 14-201 (259)
67 PRK06210 enoyl-CoA hydratase; 99.5 1.4E-12 3.1E-17 118.9 16.5 164 119-283 11-212 (272)
68 PLN02888 enoyl-CoA hydratase 99.5 1.3E-12 2.8E-17 118.9 16.2 160 124-284 20-204 (265)
69 PRK03580 carnitinyl-CoA dehydr 99.5 1.5E-12 3.2E-17 118.2 16.2 159 124-284 13-199 (261)
70 PRK08272 enoyl-CoA hydratase; 99.5 1.1E-12 2.5E-17 121.4 15.8 161 123-284 19-229 (302)
71 PLN02921 naphthoate synthase 99.5 1.8E-12 3.9E-17 121.3 17.2 161 123-284 76-266 (327)
72 PRK09245 enoyl-CoA hydratase; 99.5 1.6E-12 3.5E-17 118.2 16.5 161 123-284 12-208 (266)
73 PRK05809 3-hydroxybutyryl-CoA 99.5 1.8E-12 3.8E-17 117.5 16.6 161 123-284 13-202 (260)
74 PRK07511 enoyl-CoA hydratase; 99.5 2.1E-12 4.6E-17 117.0 16.8 159 124-283 13-202 (260)
75 PRK07799 enoyl-CoA hydratase; 99.5 1.7E-12 3.7E-17 117.9 16.3 161 123-284 14-205 (263)
76 PRK07658 enoyl-CoA hydratase; 99.5 2E-12 4.3E-17 117.0 16.5 159 124-284 12-199 (257)
77 PRK08290 enoyl-CoA hydratase; 99.5 1.9E-12 4.1E-17 119.3 16.6 161 124-285 14-222 (288)
78 COG1024 CaiD Enoyl-CoA hydrata 99.5 2E-12 4.4E-17 117.0 16.5 158 124-282 15-202 (257)
79 PRK07110 polyketide biosynthes 99.5 2.6E-12 5.7E-17 115.9 16.9 159 124-284 15-199 (249)
80 PRK06213 enoyl-CoA hydratase; 99.5 3E-12 6.5E-17 114.0 17.0 159 123-284 12-197 (229)
81 PRK08260 enoyl-CoA hydratase; 99.5 2.3E-12 5E-17 119.0 16.6 160 123-283 13-217 (296)
82 PRK05870 enoyl-CoA hydratase; 99.5 1.7E-12 3.6E-17 117.1 14.8 158 124-284 13-198 (249)
83 PRK07854 enoyl-CoA hydratase; 99.5 2.6E-12 5.7E-17 115.5 15.8 153 123-277 9-184 (243)
84 PRK12478 enoyl-CoA hydratase; 99.4 2.2E-12 4.8E-17 119.3 15.5 164 119-284 11-214 (298)
85 PRK08259 enoyl-CoA hydratase; 99.4 3.1E-12 6.6E-17 115.8 15.1 161 123-284 12-198 (254)
86 TIGR03189 dienoyl_CoA_hyt cycl 99.4 8.6E-12 1.9E-16 112.7 17.5 148 119-269 7-178 (251)
87 PRK07112 polyketide biosynthes 99.4 5.9E-12 1.3E-16 114.0 16.3 156 123-282 13-196 (255)
88 PRK08321 naphthoate synthase; 99.4 6.3E-12 1.4E-16 116.5 16.6 161 123-284 34-241 (302)
89 PRK08788 enoyl-CoA hydratase; 99.4 1.1E-11 2.4E-16 114.0 17.6 159 123-283 26-225 (287)
90 PLN03214 probable enoyl-CoA hy 99.4 1.6E-11 3.4E-16 112.6 16.8 161 122-284 20-213 (278)
91 TIGR03200 dearomat_oah 6-oxocy 99.4 2.7E-11 5.8E-16 113.8 16.7 149 121-270 35-215 (360)
92 PRK07827 enoyl-CoA hydratase; 99.4 2.4E-11 5.2E-16 110.2 15.8 158 123-283 15-202 (260)
93 PRK05617 3-hydroxyisobutyryl-C 99.4 2.8E-11 6E-16 114.1 16.4 153 119-273 9-193 (342)
94 cd06558 crotonase-like Crotona 99.3 5E-11 1.1E-15 102.7 16.4 157 123-280 8-194 (195)
95 PRK07509 enoyl-CoA hydratase; 99.3 3.6E-11 7.8E-16 109.1 14.9 158 123-283 12-204 (262)
96 PRK06072 enoyl-CoA hydratase; 99.3 7.1E-11 1.5E-15 106.5 16.0 157 123-283 9-189 (248)
97 PLN02157 3-hydroxyisobutyryl-C 99.3 7.8E-11 1.7E-15 113.0 17.0 158 123-282 46-234 (401)
98 PRK11730 fadB multifunctional 99.3 6.9E-11 1.5E-15 121.2 17.2 160 123-283 16-206 (715)
99 PLN02874 3-hydroxyisobutyryl-C 99.3 8.3E-11 1.8E-15 112.3 16.0 152 119-272 17-197 (379)
100 PLN02267 enoyl-CoA hydratase/i 99.3 2.6E-10 5.6E-15 102.4 17.3 158 124-283 10-201 (239)
101 cd07020 Clp_protease_NfeD_1 No 99.3 8.3E-11 1.8E-15 101.7 13.1 127 136-273 8-172 (187)
102 TIGR03222 benzo_boxC benzoyl-C 99.3 1.9E-10 4.2E-15 114.1 16.7 149 136-284 293-482 (546)
103 PRK08184 benzoyl-CoA-dihydrodi 99.2 1.8E-10 4E-15 114.5 15.9 149 136-284 297-486 (550)
104 PLN02988 3-hydroxyisobutyryl-C 99.2 4.4E-10 9.5E-15 107.3 15.9 155 123-278 18-203 (381)
105 TIGR02437 FadB fatty oxidation 99.2 8.3E-10 1.8E-14 113.2 17.2 158 123-281 16-204 (714)
106 PLN02851 3-hydroxyisobutyryl-C 99.2 1.1E-09 2.3E-14 105.3 16.6 168 108-281 40-238 (407)
107 cd07014 S49_SppA Signal peptid 99.2 5.1E-10 1.1E-14 95.8 13.1 132 135-274 16-176 (177)
108 PRK11154 fadJ multifunctional 99.2 8.8E-10 1.9E-14 113.1 16.7 157 123-280 15-204 (708)
109 TIGR02440 FadJ fatty oxidation 99.2 8.1E-10 1.7E-14 113.2 16.1 155 124-279 11-198 (699)
110 COG0447 MenB Dihydroxynaphthoi 99.2 3.1E-10 6.8E-15 98.6 10.9 155 128-283 33-220 (282)
111 TIGR03222 benzo_boxC benzoyl-C 99.1 1.6E-09 3.4E-14 107.6 16.8 150 134-284 41-229 (546)
112 PRK08184 benzoyl-CoA-dihydrodi 99.1 3.9E-09 8.4E-14 105.1 16.1 150 134-284 45-233 (550)
113 PF03255 ACCA: Acetyl co-enzym 99.1 3.9E-10 8.5E-15 92.3 6.8 101 27-154 37-145 (145)
114 TIGR02441 fa_ox_alpha_mit fatt 99.1 7E-09 1.5E-13 106.8 17.6 158 123-281 22-225 (737)
115 KOG0368|consensus 99.0 1E-09 2.2E-14 115.2 8.1 173 109-283 1527-1774(2196)
116 cd07021 Clp_protease_NfeD_like 99.0 1.5E-08 3.3E-13 87.1 13.5 125 136-271 8-176 (178)
117 cd07016 S14_ClpP_1 Caseinolyti 98.8 3.9E-08 8.4E-13 82.7 10.0 118 135-264 6-160 (160)
118 cd07015 Clp_protease_NfeD Nodu 98.7 2.2E-07 4.8E-12 79.4 13.2 125 136-271 8-170 (172)
119 cd07023 S49_Sppa_N_C Signal pe 98.7 2.1E-07 4.6E-12 81.6 12.7 93 136-236 9-106 (208)
120 cd07022 S49_Sppa_36K_type Sign 98.7 3.6E-07 7.9E-12 80.6 13.4 91 136-235 20-112 (214)
121 cd00394 Clp_protease_like Case 98.6 3E-07 6.4E-12 77.2 10.0 92 134-236 4-97 (161)
122 TIGR00706 SppA_dom signal pept 98.6 9.1E-07 2E-11 77.7 13.5 86 141-235 13-100 (207)
123 KOG0016|consensus 98.6 2.7E-06 5.8E-11 76.1 15.2 147 130-278 25-206 (266)
124 KOG1682|consensus 98.5 9.9E-07 2.1E-11 76.4 11.5 160 120-282 40-227 (287)
125 cd07019 S49_SppA_1 Signal pept 98.5 2.1E-06 4.7E-11 75.6 13.7 85 142-234 22-108 (211)
126 KOG1679|consensus 98.5 6.2E-07 1.3E-11 78.2 9.5 147 118-268 33-213 (291)
127 cd07018 S49_SppA_67K_type Sign 98.4 2.5E-06 5.5E-11 75.7 10.8 91 136-235 24-116 (222)
128 KOG1681|consensus 98.4 2E-06 4.3E-11 75.7 9.3 156 127-283 35-232 (292)
129 TIGR00705 SppA_67K signal pept 98.3 8.4E-06 1.8E-10 82.2 13.6 84 142-233 330-415 (584)
130 PRK12553 ATP-dependent Clp pro 98.3 6.5E-06 1.4E-10 72.4 10.3 124 134-268 40-203 (207)
131 cd07013 S14_ClpP Caseinolytic 98.3 8.2E-06 1.8E-10 69.0 10.1 120 134-264 5-162 (162)
132 PRK00277 clpP ATP-dependent Cl 98.2 1.8E-05 4E-10 69.2 12.4 124 134-268 36-197 (200)
133 PRK14512 ATP-dependent Clp pro 98.2 3.2E-05 6.8E-10 67.6 13.0 128 135-273 29-195 (197)
134 PRK12551 ATP-dependent Clp pro 98.2 1.9E-05 4.2E-10 68.9 10.8 125 133-268 29-191 (196)
135 PRK14514 ATP-dependent Clp pro 98.1 1.9E-05 4.1E-10 70.1 10.4 124 133-267 58-219 (221)
136 COG1030 NfeD Membrane-bound se 98.1 2.1E-05 4.7E-10 75.4 11.1 139 120-274 24-196 (436)
137 PRK11778 putative inner membra 98.1 0.0001 2.2E-09 69.1 14.2 83 144-235 111-193 (330)
138 TIGR00493 clpP ATP-dependent C 98.1 5.7E-05 1.2E-09 65.7 11.7 122 135-267 32-191 (191)
139 CHL00028 clpP ATP-dependent Cl 98.1 3.4E-05 7.3E-10 67.6 10.3 125 133-268 34-197 (200)
140 PF00574 CLP_protease: Clp pro 98.0 2.7E-05 5.9E-10 66.7 9.1 124 133-267 20-181 (182)
141 cd07017 S14_ClpP_2 Caseinolyti 98.0 3.4E-05 7.3E-10 65.8 9.2 120 134-264 14-171 (171)
142 PRK14513 ATP-dependent Clp pro 98.0 6.6E-05 1.4E-09 65.8 10.9 126 133-269 31-194 (201)
143 COG0616 SppA Periplasmic serin 97.9 0.00015 3.2E-09 67.9 12.6 85 143-236 82-168 (317)
144 KOG0368|consensus 97.9 2.5E-05 5.4E-10 83.2 7.5 148 56-236 1800-1990(2196)
145 COG0740 ClpP Protease subunit 97.8 0.00015 3.2E-09 63.2 9.7 106 153-269 53-194 (200)
146 PRK10949 protease 4; Provision 97.8 0.00037 8E-09 70.7 13.4 85 141-233 347-433 (618)
147 PRK12552 ATP-dependent Clp pro 97.6 0.00043 9.2E-09 61.5 9.6 124 141-268 52-215 (222)
148 PF01972 SDH_sah: Serine dehyd 97.2 0.0014 3E-08 59.6 8.3 89 136-236 70-158 (285)
149 smart00661 RPOL9 RNA polymeras 97.2 0.0001 2.2E-09 50.2 0.1 33 30-62 2-35 (52)
150 PRK10949 protease 4; Provision 96.9 0.0087 1.9E-07 60.9 11.0 88 140-235 94-183 (618)
151 PF01343 Peptidase_S49: Peptid 96.8 0.0013 2.9E-08 54.9 4.2 44 192-236 3-46 (154)
152 TIGR00705 SppA_67K signal pept 96.8 0.0094 2E-07 60.3 10.7 86 140-234 75-163 (584)
153 KOG0840|consensus 96.7 0.011 2.5E-07 53.1 8.9 125 133-267 96-257 (275)
154 KOG1684|consensus 96.1 0.1 2.2E-06 49.2 12.2 141 127-269 52-224 (401)
155 PHA00626 hypothetical protein 94.3 0.019 4.1E-07 39.6 0.9 32 30-61 2-37 (59)
156 PF10571 UPF0547: Uncharacteri 94.2 0.028 6.2E-07 32.8 1.4 23 30-57 2-24 (26)
157 PF09538 FYDLN_acid: Protein o 94.0 0.027 5.9E-07 44.5 1.4 31 28-60 9-39 (108)
158 PF02150 RNA_POL_M_15KD: RNA p 93.1 0.021 4.6E-07 35.8 -0.4 31 30-60 3-33 (35)
159 TIGR02300 FYDLN_acid conserved 92.7 0.058 1.3E-06 43.5 1.4 31 28-60 9-39 (129)
160 COG2888 Predicted Zn-ribbon RN 92.4 0.065 1.4E-06 37.4 1.2 31 28-58 27-61 (61)
161 PRK14890 putative Zn-ribbon RN 92.1 0.072 1.6E-06 37.2 1.1 33 26-58 23-59 (59)
162 TIGR00375 conserved hypothetic 91.4 0.09 2E-06 50.3 1.4 42 28-70 240-281 (374)
163 PF07754 DUF1610: Domain of un 89.9 0.15 3.3E-06 29.1 0.9 24 31-55 1-24 (24)
164 PF13240 zinc_ribbon_2: zinc-r 89.7 0.16 3.5E-06 28.7 0.8 22 30-56 1-22 (23)
165 PF13248 zf-ribbon_3: zinc-rib 89.5 0.16 3.5E-06 29.5 0.8 23 29-56 3-25 (26)
166 PRK00398 rpoP DNA-directed RNA 88.0 0.086 1.9E-06 34.9 -1.2 33 29-62 4-36 (46)
167 PF08274 PhnA_Zn_Ribbon: PhnA 87.2 0.19 4.1E-06 30.4 0.1 26 29-56 3-28 (30)
168 PF14205 Cys_rich_KTR: Cystein 87.1 0.13 2.8E-06 35.3 -0.7 37 26-62 2-43 (55)
169 PF08271 TF_Zn_Ribbon: TFIIB z 86.5 0.23 5E-06 32.3 0.2 27 30-56 2-28 (43)
170 COG1379 PHP family phosphoeste 86.5 0.31 6.8E-06 45.5 1.1 44 28-71 246-289 (403)
171 TIGR00686 phnA alkylphosphonat 86.3 0.27 5.8E-06 38.6 0.5 29 30-60 4-32 (109)
172 COG1645 Uncharacterized Zn-fin 85.3 0.34 7.3E-06 39.5 0.6 26 28-56 28-53 (131)
173 PRK07218 replication factor A; 84.7 0.19 4.1E-06 49.0 -1.3 41 25-73 294-334 (423)
174 PRK10220 hypothetical protein; 83.3 0.57 1.2E-05 36.8 1.1 29 30-60 5-33 (111)
175 COG4530 Uncharacterized protei 83.0 0.53 1.1E-05 37.1 0.8 30 28-59 9-38 (129)
176 PRK00420 hypothetical protein; 82.6 0.6 1.3E-05 37.1 1.0 30 28-59 23-52 (112)
177 PF14353 CpXC: CpXC protein 82.0 0.55 1.2E-05 37.8 0.6 16 46-61 37-52 (128)
178 TIGR02098 MJ0042_CXXC MJ0042 f 81.4 0.56 1.2E-05 29.4 0.4 29 29-57 3-35 (38)
179 PF13453 zf-TFIIB: Transcripti 80.8 0.61 1.3E-05 30.0 0.4 27 30-56 1-28 (41)
180 smart00531 TFIIE Transcription 80.3 0.73 1.6E-05 38.2 0.8 31 26-56 97-132 (147)
181 TIGR00373 conserved hypothetic 79.0 1.1 2.5E-05 37.6 1.6 31 26-56 107-137 (158)
182 PRK06386 replication factor A; 78.8 0.32 7E-06 46.3 -2.0 41 25-73 233-273 (358)
183 PF06827 zf-FPG_IleRS: Zinc fi 77.6 0.87 1.9E-05 27.1 0.3 27 29-55 2-29 (30)
184 PF10122 Mu-like_Com: Mu-like 77.0 0.68 1.5E-05 31.4 -0.3 29 29-57 5-34 (51)
185 PRK06266 transcription initiat 76.9 1.6 3.5E-05 37.4 2.0 32 26-57 115-146 (178)
186 COG2995 PqiA Uncharacterized p 76.7 1.3 2.9E-05 42.4 1.5 36 21-56 11-47 (418)
187 PF09297 zf-NADH-PPase: NADH p 76.1 0.92 2E-05 27.5 0.1 26 30-56 5-30 (32)
188 PRK12366 replication factor A; 76.0 0.38 8.2E-06 49.4 -2.6 44 26-73 530-573 (637)
189 PRK12286 rpmF 50S ribosomal pr 74.4 1.6 3.4E-05 30.4 1.0 26 26-57 25-50 (57)
190 PF11023 DUF2614: Protein of u 73.6 1.7 3.7E-05 34.4 1.1 30 27-59 68-97 (114)
191 PF06677 Auto_anti-p27: Sjogre 72.8 1.7 3.7E-05 28.2 0.8 25 28-54 17-41 (41)
192 PRK12496 hypothetical protein; 72.5 1.7 3.8E-05 36.8 1.0 27 27-56 125-152 (164)
193 COG1996 RPC10 DNA-directed RNA 72.4 1.6 3.4E-05 29.5 0.6 28 29-57 7-34 (49)
194 PF14803 Nudix_N_2: Nudix N-te 72.1 1.3 2.8E-05 27.5 0.1 26 30-55 2-30 (34)
195 PF01783 Ribosomal_L32p: Ribos 71.9 2.1 4.6E-05 29.6 1.2 23 28-56 26-48 (56)
196 smart00440 ZnF_C2C2 C2C2 Zinc 71.3 1.8 3.9E-05 27.8 0.6 29 30-58 2-39 (40)
197 PRK00432 30S ribosomal protein 71.2 1.8 3.9E-05 29.3 0.7 27 27-56 19-46 (50)
198 TIGR01031 rpmF_bact ribosomal 70.8 1.6 3.5E-05 30.1 0.4 25 27-57 25-49 (55)
199 PRK07217 replication factor A; 70.4 1 2.2E-05 42.0 -0.9 41 25-73 185-227 (311)
200 COG1594 RPB9 DNA-directed RNA 70.0 1.9 4.1E-05 34.3 0.7 34 29-62 3-37 (113)
201 PF01096 TFIIS_C: Transcriptio 69.4 1.1 2.4E-05 28.6 -0.7 29 29-57 1-38 (39)
202 PF12982 DUF3866: Protein of u 69.1 34 0.00074 32.1 8.7 98 118-236 86-201 (320)
203 PRK05978 hypothetical protein; 68.8 2.7 6E-05 35.0 1.4 31 25-56 30-61 (148)
204 TIGR01384 TFS_arch transcripti 68.7 2.4 5.3E-05 32.7 1.0 28 30-60 2-29 (104)
205 TIGR00100 hypA hydrogenase nic 68.3 2.5 5.5E-05 33.6 1.0 28 27-57 69-96 (115)
206 PRK12380 hydrogenase nickel in 68.2 2.5 5.4E-05 33.5 1.0 27 27-56 69-95 (113)
207 COG1545 Predicted nucleic-acid 67.9 2.5 5.3E-05 34.9 1.0 69 27-123 28-96 (140)
208 TIGR00310 ZPR1_znf ZPR1 zinc f 67.3 2.1 4.6E-05 37.2 0.5 29 29-57 1-40 (192)
209 PF07282 OrfB_Zn_ribbon: Putat 66.9 3.3 7.2E-05 29.3 1.4 31 26-57 26-56 (69)
210 COG1571 Predicted DNA-binding 66.6 2.6 5.6E-05 40.9 0.9 42 29-72 351-392 (421)
211 TIGR00155 pqiA_fam integral me 66.5 3.2 6.8E-05 40.3 1.5 33 24-56 9-42 (403)
212 PRK03824 hypA hydrogenase nick 66.3 3.1 6.7E-05 34.1 1.2 29 28-56 70-116 (135)
213 COG0333 RpmF Ribosomal protein 65.9 3 6.6E-05 29.0 0.9 24 28-57 27-50 (57)
214 PRK00464 nrdR transcriptional 65.8 3 6.4E-05 35.1 1.0 29 29-57 1-38 (154)
215 COG1998 RPS31 Ribosomal protei 64.7 3.2 7E-05 28.0 0.8 28 28-56 19-46 (51)
216 PF01927 Mut7-C: Mut7-C RNAse 64.1 2.9 6.4E-05 34.5 0.7 33 24-56 87-133 (147)
217 KOG2907|consensus 63.9 3 6.5E-05 33.0 0.7 33 26-58 72-113 (116)
218 PRK03681 hypA hydrogenase nick 63.2 3.9 8.4E-05 32.5 1.2 28 27-56 69-96 (114)
219 PRK00564 hypA hydrogenase nick 62.9 3.8 8.3E-05 32.7 1.1 28 27-56 70-97 (117)
220 PF05876 Terminase_GpA: Phage 62.5 4.5 9.7E-05 40.9 1.8 50 27-79 199-258 (557)
221 COG1997 RPL43A Ribosomal prote 62.1 3.3 7.2E-05 31.3 0.6 28 29-57 36-63 (89)
222 PHA02998 RNA polymerase subuni 61.3 4.8 0.0001 34.5 1.5 37 24-60 139-184 (195)
223 PRK08402 replication factor A; 61.2 1.3 2.8E-05 42.2 -2.2 45 27-73 211-255 (355)
224 TIGR02443 conserved hypothetic 61.0 3.9 8.4E-05 28.7 0.7 31 29-60 10-44 (59)
225 PF01155 HypA: Hydrogenase exp 60.9 3.4 7.4E-05 32.7 0.5 28 27-57 69-96 (113)
226 PF12172 DUF35_N: Rubredoxin-l 60.7 3.4 7.3E-05 25.7 0.4 24 27-55 10-33 (37)
227 TIGR01206 lysW lysine biosynth 60.6 4 8.7E-05 28.1 0.8 29 29-57 3-32 (54)
228 PRK14811 formamidopyrimidine-D 60.5 4 8.6E-05 37.3 1.0 31 29-59 236-267 (269)
229 PF10058 DUF2296: Predicted in 60.4 3.9 8.5E-05 28.1 0.7 28 29-56 23-53 (54)
230 PF13719 zinc_ribbon_5: zinc-r 60.2 3.6 7.8E-05 25.8 0.5 29 29-57 3-35 (37)
231 COG2824 PhnA Uncharacterized Z 60.1 3.4 7.4E-05 32.4 0.4 26 30-57 5-30 (112)
232 COG2816 NPY1 NTP pyrophosphohy 60.1 4.1 8.9E-05 37.4 1.0 11 108-118 143-153 (279)
233 smart00659 RPOLCX RNA polymera 60.1 4.5 9.7E-05 26.6 0.9 25 30-56 4-28 (44)
234 smart00834 CxxC_CXXC_SSSS Puta 59.4 5 0.00011 25.2 1.0 27 30-56 7-35 (41)
235 KOG0780|consensus 59.2 38 0.00082 33.0 7.2 20 194-213 242-261 (483)
236 PF07295 DUF1451: Protein of u 59.0 4.9 0.00011 33.5 1.2 27 29-56 113-139 (146)
237 COG1096 Predicted RNA-binding 58.4 4.1 8.8E-05 35.2 0.6 26 28-56 149-174 (188)
238 PHA02942 putative transposase; 58.1 4.2 9.1E-05 39.2 0.7 35 24-60 321-355 (383)
239 PF09526 DUF2387: Probable met 57.5 4.4 9.6E-05 29.5 0.6 33 29-62 9-45 (71)
240 PRK02935 hypothetical protein; 57.4 6 0.00013 31.0 1.3 29 29-60 71-99 (110)
241 PF09986 DUF2225: Uncharacteri 56.4 4.4 9.6E-05 35.8 0.5 11 47-57 48-58 (214)
242 TIGR00595 priA primosomal prot 55.5 64 0.0014 32.2 8.6 28 29-58 223-251 (505)
243 PRK14714 DNA polymerase II lar 55.3 5.4 0.00012 43.7 1.0 21 29-56 668-688 (1337)
244 TIGR00354 polC DNA polymerase, 54.9 5.7 0.00012 42.3 1.1 35 28-69 625-667 (1095)
245 cd00350 rubredoxin_like Rubred 54.1 7.9 0.00017 23.6 1.2 24 30-56 3-26 (33)
246 COG1592 Rubrerythrin [Energy p 53.7 6.8 0.00015 33.3 1.2 25 27-56 134-158 (166)
247 PF14206 Cys_rich_CPCC: Cystei 53.1 6.6 0.00014 29.1 0.9 28 29-56 2-29 (78)
248 smart00647 IBR In Between Ring 52.4 6 0.00013 27.1 0.6 31 27-57 17-50 (64)
249 PF12773 DZR: Double zinc ribb 52.3 6.9 0.00015 25.8 0.8 28 28-57 12-39 (50)
250 PF09855 DUF2082: Nucleic-acid 52.1 6.5 0.00014 28.0 0.7 11 30-40 2-12 (64)
251 cd00729 rubredoxin_SM Rubredox 51.7 9.1 0.0002 23.6 1.2 24 30-56 4-27 (34)
252 PRK11032 hypothetical protein; 51.4 7.7 0.00017 32.8 1.1 27 29-56 125-151 (160)
253 PRK09932 glycerate kinase II; 51.1 13 0.00027 35.9 2.7 42 108-166 284-325 (381)
254 PF08792 A2L_zn_ribbon: A2L zi 50.9 6.1 0.00013 24.3 0.3 26 30-57 5-31 (33)
255 PF12760 Zn_Tnp_IS1595: Transp 50.5 7.8 0.00017 25.4 0.8 30 24-56 16-46 (46)
256 KOG0073|consensus 50.0 32 0.0007 29.4 4.6 59 118-177 114-172 (185)
257 COG1656 Uncharacterized conser 50.0 6.7 0.00015 33.2 0.6 29 28-56 97-139 (165)
258 PF03119 DNA_ligase_ZBD: NAD-d 49.9 6.3 0.00014 23.3 0.3 21 30-51 1-21 (28)
259 PF03604 DNA_RNApol_7kD: DNA d 49.8 11 0.00023 23.1 1.3 24 31-56 3-26 (32)
260 COG1570 XseA Exonuclease VII, 49.3 30 0.00065 34.0 4.9 99 124-235 163-262 (440)
261 PRK01110 rpmF 50S ribosomal pr 49.2 7.9 0.00017 27.2 0.8 22 28-56 27-48 (60)
262 COG1198 PriA Primosomal protei 49.1 8.6 0.00019 40.2 1.3 53 28-81 444-516 (730)
263 COG0375 HybF Zn finger protein 49.1 8.9 0.00019 30.6 1.1 27 27-56 69-95 (115)
264 KOG2906|consensus 48.4 6.1 0.00013 30.5 0.1 31 30-60 3-34 (105)
265 COG0552 FtsY Signal recognitio 48.3 82 0.0018 29.9 7.5 88 120-211 166-273 (340)
266 PRK15103 paraquat-inducible me 47.8 8.6 0.00019 37.5 1.0 29 29-57 11-40 (419)
267 COG1405 SUA7 Transcription ini 47.3 7.9 0.00017 35.8 0.7 38 29-73 2-39 (285)
268 PF09723 Zn-ribbon_8: Zinc rib 47.2 9.1 0.0002 24.6 0.8 26 30-55 7-34 (42)
269 PRK10342 glycerate kinase I; P 46.9 14 0.00031 35.6 2.3 43 108-167 284-326 (381)
270 PF11781 RRN7: RNA polymerase 46.9 7.3 0.00016 24.4 0.3 26 29-56 9-34 (36)
271 TIGR00045 glycerate kinase. Th 46.7 15 0.00033 35.3 2.5 44 108-168 283-326 (375)
272 PF04606 Ogr_Delta: Ogr/Delta- 45.4 5.8 0.00013 26.2 -0.4 29 30-58 1-38 (47)
273 COG3809 Uncharacterized protei 45.3 8.8 0.00019 28.5 0.5 24 30-55 3-29 (88)
274 PRK14892 putative transcriptio 45.3 9.8 0.00021 29.5 0.8 38 20-59 15-54 (99)
275 TIGR02605 CxxC_CxxC_SSSS putat 45.0 11 0.00025 25.0 1.0 27 30-56 7-35 (52)
276 PF09837 DUF2064: Uncharacteri 45.0 26 0.00056 28.0 3.2 61 141-217 44-106 (122)
277 cd04476 RPA1_DBD_C RPA1_DBD_C: 44.7 2.7 5.8E-05 35.2 -2.7 44 28-73 34-78 (166)
278 PRK11827 hypothetical protein; 44.6 10 0.00022 26.7 0.7 37 28-67 8-44 (60)
279 PF02601 Exonuc_VII_L: Exonucl 44.5 58 0.0013 30.1 6.0 80 139-228 53-137 (319)
280 PRK00423 tfb transcription ini 44.3 8.9 0.00019 35.7 0.5 39 28-73 11-49 (310)
281 PRK05580 primosome assembly pr 44.2 94 0.002 32.3 8.0 28 29-57 391-418 (679)
282 PRK08271 anaerobic ribonucleos 43.7 16 0.00034 37.6 2.2 33 28-66 566-598 (623)
283 PF06221 zf-C2HC5: Putative zi 43.6 23 0.0005 24.6 2.4 37 28-67 18-54 (57)
284 PRK12495 hypothetical protein; 43.1 11 0.00024 33.5 0.8 26 28-56 42-67 (226)
285 TIGR00244 transcriptional regu 43.0 6.9 0.00015 32.5 -0.4 37 29-67 1-46 (147)
286 TIGR00689 rpiB_lacA_lacB sugar 42.8 26 0.00057 29.0 3.0 73 53-130 5-87 (144)
287 PF14446 Prok-RING_1: Prokaryo 42.7 11 0.00024 25.9 0.7 25 29-56 6-30 (54)
288 PRK08579 anaerobic ribonucleos 42.5 14 0.0003 38.0 1.6 33 28-66 568-600 (625)
289 COG4416 Com Mu-like prophage p 42.5 6.5 0.00014 27.0 -0.5 26 29-54 5-31 (60)
290 PF00301 Rubredoxin: Rubredoxi 42.2 14 0.00031 24.6 1.1 10 47-56 34-43 (47)
291 TIGR02177 PorB_KorB 2-oxoacid: 42.1 27 0.00059 32.3 3.4 42 156-208 70-112 (287)
292 PF03367 zf-ZPR1: ZPR1 zinc-fi 42.1 7.9 0.00017 32.7 -0.2 27 180-206 128-154 (161)
293 COG0132 BioD Dethiobiotin synt 41.7 78 0.0017 28.2 6.1 54 147-210 126-179 (223)
294 cd05014 SIS_Kpsf KpsF-like pro 41.5 40 0.00088 26.2 3.9 28 144-171 61-88 (128)
295 smart00709 Zpr1 Duplicated dom 41.5 12 0.00026 31.6 0.8 26 181-206 128-153 (160)
296 COG1675 TFA1 Transcription ini 41.4 12 0.00027 32.0 0.9 45 26-70 111-156 (176)
297 PRK14715 DNA polymerase II lar 41.3 11 0.00023 41.7 0.6 24 28-58 674-697 (1627)
298 PRK14704 anaerobic ribonucleos 41.1 16 0.00034 37.6 1.7 33 28-66 559-593 (618)
299 KOG2691|consensus 40.8 15 0.00033 28.9 1.2 39 19-57 64-111 (113)
300 PF14319 Zn_Tnp_IS91: Transpos 40.4 17 0.00037 28.7 1.5 51 28-79 42-93 (111)
301 PRK12311 rpsB 30S ribosomal pr 40.3 34 0.00073 32.3 3.7 42 114-167 144-185 (326)
302 PRK04023 DNA polymerase II lar 40.2 14 0.00031 39.7 1.3 14 221-234 849-862 (1121)
303 PF01921 tRNA-synt_1f: tRNA sy 39.9 4.2 9.1E-05 38.8 -2.4 42 20-63 168-215 (360)
304 COG2260 Predicted Zn-ribbon RN 39.8 20 0.00042 25.1 1.5 24 27-57 4-27 (59)
305 COG0675 Transposase and inacti 39.8 17 0.00036 33.2 1.6 28 24-57 305-332 (364)
306 PRK13130 H/ACA RNA-protein com 39.1 17 0.00037 25.2 1.1 23 27-56 4-26 (56)
307 PRK11788 tetratricopeptide rep 38.8 13 0.00028 34.6 0.7 33 24-62 351-383 (389)
308 KOG1873|consensus 38.8 5.9 0.00013 41.0 -1.7 37 21-57 59-103 (877)
309 KOG0781|consensus 38.8 1E+02 0.0023 30.9 6.8 78 120-207 405-507 (587)
310 cd00730 rubredoxin Rubredoxin; 38.6 18 0.00038 24.5 1.1 10 47-56 34-43 (50)
311 PRK09678 DNA-binding transcrip 38.6 12 0.00026 27.3 0.3 30 29-58 2-40 (72)
312 COG1327 Predicted transcriptio 38.4 11 0.00025 31.4 0.2 38 29-68 1-47 (156)
313 COG2995 PqiA Uncharacterized p 38.2 18 0.00039 34.9 1.5 37 26-66 218-254 (418)
314 PF11020 DUF2610: Domain of un 38.2 35 0.00075 25.4 2.7 28 133-160 41-68 (82)
315 PRK00286 xseA exodeoxyribonucl 37.7 71 0.0015 31.1 5.7 98 125-236 164-262 (438)
316 COG3364 Zn-ribbon containing p 37.5 12 0.00026 29.2 0.2 27 29-56 3-29 (112)
317 PF14828 Amnionless: Amnionles 37.3 1.5E+02 0.0032 29.2 7.7 105 37-168 216-329 (437)
318 TIGR01011 rpsB_bact ribosomal 37.2 49 0.0011 29.4 4.1 43 114-168 147-189 (225)
319 COG1779 C4-type Zn-finger prot 37.2 13 0.00028 32.5 0.4 31 27-57 13-53 (201)
320 COG1384 LysS Lysyl-tRNA synthe 37.0 12 0.00026 37.3 0.1 35 27-62 170-209 (521)
321 PRK00241 nudC NADH pyrophospha 36.9 15 0.00032 33.3 0.8 14 44-57 96-109 (256)
322 COG2835 Uncharacterized conser 36.7 14 0.00029 26.1 0.3 38 29-69 9-46 (60)
323 PLN02743 nicotinamidase 36.6 1E+02 0.0022 27.7 6.1 49 118-166 22-83 (239)
324 COG3529 Predicted nucleic-acid 36.3 11 0.00025 26.4 -0.1 31 29-60 11-45 (66)
325 COG0052 RpsB Ribosomal protein 36.0 49 0.0011 30.0 3.8 43 113-167 147-189 (252)
326 PRK00762 hypA hydrogenase nick 35.9 19 0.00041 29.0 1.2 29 27-56 69-101 (124)
327 TIGR01120 rpiB ribose 5-phosph 35.6 41 0.00088 27.9 3.1 61 84-164 36-106 (143)
328 PF01286 XPA_N: XPA protein N- 35.4 17 0.00038 22.5 0.7 27 29-55 4-32 (34)
329 PRK00415 rps27e 30S ribosomal 35.1 14 0.00031 25.8 0.3 28 27-56 10-39 (59)
330 KOG1812|consensus 35.1 15 0.00033 35.4 0.5 33 26-60 304-336 (384)
331 CHL00067 rps2 ribosomal protei 34.9 49 0.0011 29.5 3.8 40 116-167 155-194 (230)
332 PLN02584 5'-methylthioadenosin 34.8 3.1E+02 0.0068 24.5 9.0 58 110-169 42-101 (249)
333 PRK09722 allulose-6-phosphate 34.8 1.2E+02 0.0026 27.1 6.2 43 124-166 134-176 (229)
334 PRK05299 rpsB 30S ribosomal pr 34.7 46 0.00099 30.3 3.5 42 114-167 149-190 (258)
335 PF03966 Trm112p: Trm112p-like 34.5 9.6 0.00021 27.1 -0.7 18 42-59 48-65 (68)
336 PRK13796 GTPase YqeH; Provisio 34.3 3.1E+02 0.0066 26.1 9.3 46 121-169 96-145 (365)
337 PF03833 PolC_DP2: DNA polymer 34.2 13 0.00029 39.1 0.0 11 29-39 656-666 (900)
338 PRK09521 exosome complex RNA-b 34.1 15 0.00032 31.7 0.2 27 28-56 149-175 (189)
339 COG0846 SIR2 NAD-dependent pro 33.2 21 0.00045 32.4 1.0 28 29-56 123-155 (250)
340 cd01407 SIR2-fam SIR2 family o 33.0 23 0.0005 31.1 1.3 34 28-61 109-147 (218)
341 PRK05571 ribose-5-phosphate is 33.0 59 0.0013 27.1 3.7 89 53-164 7-108 (148)
342 PRK12319 acetyl-CoA carboxylas 32.8 1E+02 0.0022 28.0 5.5 52 156-207 53-110 (256)
343 COG2401 ABC-type ATPase fused 32.6 14 0.00031 36.2 -0.0 26 26-57 129-154 (593)
344 PRK07111 anaerobic ribonucleos 32.5 18 0.00038 38.0 0.6 32 28-66 680-711 (735)
345 PF09082 DUF1922: Domain of un 32.4 7.6 0.00016 28.0 -1.5 30 28-60 3-32 (68)
346 PRK05819 deoD purine nucleosid 32.4 3.2E+02 0.0069 24.1 8.6 51 110-169 43-93 (235)
347 COG5349 Uncharacterized protei 32.4 16 0.00035 29.4 0.2 33 23-56 16-49 (126)
348 COG2093 DNA-directed RNA polym 32.1 20 0.00043 25.4 0.6 23 29-56 5-27 (64)
349 TIGR01118 lacA galactose-6-pho 31.9 56 0.0012 27.0 3.3 88 53-164 7-105 (141)
350 PF14835 zf-RING_6: zf-RING of 31.8 20 0.00044 25.6 0.6 23 24-46 36-58 (65)
351 COG0052 RpsB Ribosomal protein 31.8 80 0.0017 28.7 4.5 19 188-206 172-190 (252)
352 COG2956 Predicted N-acetylgluc 31.8 20 0.00043 34.0 0.7 31 27-62 353-383 (389)
353 PRK11867 2-oxoglutarate ferred 31.5 77 0.0017 29.2 4.6 42 155-208 85-128 (286)
354 PF09845 DUF2072: Zn-ribbon co 31.3 20 0.00042 29.3 0.5 27 29-56 2-28 (131)
355 COG1439 Predicted nucleic acid 31.1 17 0.00036 31.3 0.1 28 29-61 140-167 (177)
356 COG1110 Reverse gyrase [DNA re 30.9 27 0.00059 37.8 1.6 96 28-129 694-813 (1187)
357 PRK04023 DNA polymerase II lar 30.7 23 0.0005 38.2 1.0 8 30-37 628-635 (1121)
358 PF09862 DUF2089: Protein of u 30.5 20 0.00044 28.5 0.4 20 31-55 1-20 (113)
359 PLN03230 acetyl-coenzyme A car 30.4 1.1E+02 0.0024 30.0 5.5 50 157-206 177-232 (431)
360 PF07287 DUF1446: Protein of u 30.4 2.2E+02 0.0048 27.3 7.5 57 140-206 54-110 (362)
361 cd05710 SIS_1 A subgroup of th 30.3 80 0.0017 24.6 3.9 44 119-171 45-88 (120)
362 PF01380 SIS: SIS domain SIS d 30.2 75 0.0016 24.5 3.8 28 144-171 67-94 (131)
363 COG0698 RpiB Ribose 5-phosphat 30.1 86 0.0019 26.2 4.2 74 53-130 7-90 (151)
364 TIGR00155 pqiA_fam integral me 29.9 27 0.00059 33.9 1.3 26 27-56 214-239 (403)
365 cd05005 SIS_PHI Hexulose-6-pho 29.7 77 0.0017 26.5 4.0 44 119-171 73-116 (179)
366 COG0528 PyrH Uridylate kinase 29.7 87 0.0019 28.2 4.4 18 147-164 199-216 (238)
367 PRK11869 2-oxoacid ferredoxin 29.7 25 0.00054 32.4 1.0 42 156-208 77-119 (280)
368 PTZ00215 ribose 5-phosphate is 29.6 69 0.0015 26.8 3.5 60 84-163 41-110 (151)
369 KOG4198|consensus 29.4 34 0.00073 31.6 1.8 53 22-80 135-198 (280)
370 COG3222 Uncharacterized protei 29.4 97 0.0021 27.0 4.4 62 140-216 87-149 (211)
371 COG4640 Predicted membrane pro 29.3 25 0.00054 34.0 0.9 22 30-56 3-24 (465)
372 CHL00198 accA acetyl-CoA carbo 29.3 1.2E+02 0.0027 28.5 5.5 52 156-207 109-166 (322)
373 COG4245 TerY Uncharacterized p 29.0 1.1E+02 0.0024 26.7 4.7 25 156-180 2-26 (207)
374 PF13913 zf-C2HC_2: zinc-finge 28.9 19 0.00041 20.5 0.0 15 30-44 4-18 (25)
375 PRK13374 purine nucleoside pho 28.7 2.6E+02 0.0056 24.7 7.3 52 109-169 43-94 (233)
376 PRK14714 DNA polymerase II lar 28.7 18 0.0004 39.8 -0.1 9 48-56 710-718 (1337)
377 TIGR00237 xseA exodeoxyribonuc 28.5 1.4E+02 0.0031 29.1 6.1 87 139-235 168-256 (432)
378 PF10083 DUF2321: Uncharacteri 28.5 29 0.00064 29.1 1.1 37 26-62 37-83 (158)
379 KOG0801|consensus 28.4 21 0.00046 30.2 0.3 30 22-51 128-161 (205)
380 PRK05724 acetyl-CoA carboxylas 28.3 1.3E+02 0.0029 28.3 5.5 51 157-207 107-163 (319)
381 PF06044 DRP: Dam-replacing fa 28.2 14 0.00031 33.3 -0.9 30 28-57 31-63 (254)
382 TIGR00570 cdk7 CDK-activating 28.0 28 0.00062 32.5 1.0 31 59-102 72-102 (309)
383 COG1952 SecB Preprotein transl 28.0 39 0.00084 28.4 1.7 41 58-105 109-149 (157)
384 TIGR01012 Sa_S2_E_A ribosomal 27.8 57 0.0012 28.5 2.9 35 122-168 108-142 (196)
385 PRK15103 paraquat-inducible me 27.7 44 0.00095 32.6 2.4 25 27-56 220-244 (419)
386 PRK04020 rps2P 30S ribosomal p 27.7 57 0.0012 28.7 2.8 34 122-167 114-147 (204)
387 PF12387 Peptidase_C74: Pestiv 27.6 32 0.0007 29.4 1.2 28 26-59 160-187 (200)
388 TIGR00513 accA acetyl-CoA carb 27.5 1.4E+02 0.003 28.1 5.5 52 156-207 106-163 (316)
389 COG5257 GCD11 Translation init 27.2 32 0.0007 32.7 1.3 28 26-57 55-82 (415)
390 COG2051 RPS27A Ribosomal prote 27.2 21 0.00044 25.7 -0.0 27 27-55 18-46 (67)
391 TIGR00340 zpr1_rel ZPR1-relate 27.2 28 0.0006 29.5 0.7 26 181-206 123-148 (163)
392 PRK14559 putative protein seri 27.0 30 0.00065 35.7 1.1 24 29-57 28-51 (645)
393 TIGR02751 PEPCase_arch phospho 27.0 1.1E+02 0.0023 30.8 4.9 51 119-169 202-254 (506)
394 COG4007 Predicted dehydrogenas 26.9 1.1E+02 0.0023 28.4 4.4 74 205-284 29-110 (340)
395 PF11475 VP_N-CPKC: Virion pro 26.8 17 0.00036 21.6 -0.4 15 27-41 15-29 (32)
396 PF01396 zf-C4_Topoisom: Topoi 26.8 27 0.00059 22.1 0.5 28 29-56 2-33 (39)
397 COG1326 Uncharacterized archae 26.7 22 0.00047 31.0 0.0 32 26-57 4-40 (201)
398 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.6 98 0.0021 23.8 3.8 43 119-170 44-86 (126)
399 PRK05778 2-oxoglutarate ferred 26.5 76 0.0017 29.5 3.6 42 156-208 87-129 (301)
400 KOG2767|consensus 26.4 25 0.00053 33.4 0.3 39 28-67 96-138 (400)
401 TIGR03597 GTPase_YqeH ribosome 26.3 5.6E+02 0.012 24.2 12.4 45 121-168 90-138 (360)
402 PF02776 TPP_enzyme_N: Thiamin 26.3 32 0.0007 28.7 1.0 45 114-167 56-100 (172)
403 PF13500 AAA_26: AAA domain; P 26.2 1.4E+02 0.0031 25.1 5.1 47 149-205 121-167 (199)
404 PF12677 DUF3797: Domain of un 26.1 14 0.0003 24.9 -1.0 9 28-36 13-21 (49)
405 PF01485 IBR: IBR domain; Int 25.9 29 0.00062 23.5 0.5 28 29-56 19-49 (64)
406 PRK12615 galactose-6-phosphate 25.8 81 0.0018 27.0 3.3 44 84-130 37-89 (171)
407 PLN02408 phospholipase A1 25.7 1.6E+02 0.0035 28.3 5.7 36 200-236 202-241 (365)
408 cd01675 RNR_III Class III ribo 25.6 18 0.00039 36.6 -0.8 23 30-57 520-542 (555)
409 TIGR02487 NrdD anaerobic ribon 25.3 36 0.00078 34.6 1.3 33 28-66 524-556 (579)
410 cd01425 RPS2 Ribosomal protein 25.3 61 0.0013 27.9 2.6 38 118-167 123-160 (193)
411 COG5415 Predicted integral mem 25.1 30 0.00065 30.6 0.6 29 29-57 193-224 (251)
412 KOG1618|consensus 25.1 60 0.0013 30.8 2.6 27 143-169 56-83 (389)
413 PF08645 PNK3P: Polynucleotide 25.1 2E+02 0.0044 23.8 5.7 46 121-167 45-91 (159)
414 TIGR01385 TFSII transcription 25.0 30 0.00066 32.2 0.7 31 29-59 259-298 (299)
415 PRK08202 purine nucleoside pho 25.0 2.1E+02 0.0045 26.0 6.2 50 116-169 67-116 (272)
416 COG5222 Uncharacterized conser 24.9 33 0.00071 32.0 0.8 13 26-38 272-284 (427)
417 cd01412 SIRT5_Af1_CobB SIRT5_A 24.7 39 0.00085 29.6 1.3 33 29-61 110-144 (224)
418 PF00318 Ribosomal_S2: Ribosom 24.7 68 0.0015 28.1 2.8 37 119-167 140-176 (211)
419 PF14149 YhfH: YhfH-like prote 24.6 20 0.00044 22.7 -0.4 24 29-53 14-37 (37)
420 COG3357 Predicted transcriptio 24.5 36 0.00077 26.1 0.8 27 29-56 59-85 (97)
421 PF10005 DUF2248: Uncharacteri 24.5 36 0.00079 32.3 1.1 23 30-57 1-23 (343)
422 COG2945 Predicted hydrolase of 24.5 2.6E+02 0.0055 24.7 6.2 87 119-212 25-117 (210)
423 PF13717 zinc_ribbon_4: zinc-r 24.4 30 0.00064 21.5 0.3 15 24-38 21-35 (36)
424 PRK06852 aldolase; Validated 24.3 82 0.0018 29.5 3.4 37 135-171 145-181 (304)
425 PRK09710 lar restriction allev 24.2 35 0.00075 24.4 0.7 31 30-60 8-40 (64)
426 PF14307 Glyco_tran_WbsX: Glyc 24.1 1.3E+02 0.0029 28.2 4.9 44 117-166 154-197 (345)
427 COG1707 ACT domain-containing 24.1 1.7E+02 0.0036 25.2 4.8 24 143-166 153-177 (218)
428 PLN02621 nicotinamidase 23.9 1.8E+02 0.0039 24.8 5.3 47 119-167 16-64 (197)
429 cd01014 nicotinamidase_related 23.9 2.1E+02 0.0045 23.3 5.5 29 139-167 21-49 (155)
430 TIGR01700 PNPH purine nucleosi 23.8 1.6E+02 0.0035 26.4 5.1 54 110-169 41-94 (249)
431 PF08209 Sgf11: Sgf11 (transcr 23.8 17 0.00037 22.4 -0.8 24 27-50 3-26 (33)
432 TIGR00441 gmhA phosphoheptose 23.7 1.1E+02 0.0025 24.9 3.9 28 144-171 93-120 (154)
433 PRK08622 galactose-6-phosphate 23.5 90 0.0019 26.7 3.2 62 64-130 18-89 (171)
434 COG4306 Uncharacterized protei 23.5 50 0.0011 26.8 1.5 37 29-65 40-86 (160)
435 PRK11609 nicotinamidase/pyrazi 23.3 1.8E+02 0.0039 25.0 5.2 27 140-166 26-52 (212)
436 PRK08745 ribulose-phosphate 3- 23.2 2.6E+02 0.0056 24.8 6.2 43 124-166 136-178 (223)
437 cd05006 SIS_GmhA Phosphoheptos 23.2 1.2E+02 0.0025 25.4 3.9 28 144-171 115-142 (177)
438 PRK11088 rrmA 23S rRNA methylt 23.1 39 0.00084 30.5 1.0 34 30-67 4-37 (272)
439 TIGR00347 bioD dethiobiotin sy 23.0 2.6E+02 0.0055 22.7 5.9 46 149-204 121-166 (166)
440 KOG3984|consensus 22.8 3.5E+02 0.0075 24.7 6.8 58 107-168 61-118 (286)
441 PF14311 DUF4379: Domain of un 22.8 34 0.00074 23.1 0.4 20 46-65 27-46 (55)
442 PF00834 Ribul_P_3_epim: Ribul 22.7 77 0.0017 27.6 2.7 44 124-167 131-174 (201)
443 COG1929 Glycerate kinase [Carb 22.6 64 0.0014 30.9 2.3 45 107-168 283-327 (378)
444 TIGR01697 PNPH-PUNA-XAPA inosi 22.5 2.4E+02 0.0052 25.2 6.0 50 116-169 45-94 (248)
445 PF08646 Rep_fac-A_C: Replicat 22.5 29 0.00064 28.2 0.0 44 28-73 18-64 (146)
446 PF07191 zinc-ribbons_6: zinc- 22.5 19 0.00042 26.1 -0.9 11 30-40 3-13 (70)
447 PRK08351 DNA-directed RNA poly 22.4 39 0.00083 23.9 0.6 20 30-56 5-24 (61)
448 PTZ00254 40S ribosomal protein 22.4 75 0.0016 28.8 2.6 21 147-167 131-151 (249)
449 PF13824 zf-Mss51: Zinc-finger 22.3 50 0.0011 22.8 1.2 10 47-56 14-23 (55)
450 cd02013 TPP_Xsc_like Thiamine 22.2 99 0.0021 26.4 3.3 15 157-171 71-85 (196)
451 TIGR00107 deoD purine-nucleosi 22.2 4.5E+02 0.0098 23.1 7.7 52 109-169 39-90 (232)
452 TIGR03127 RuMP_HxlB 6-phospho 22.1 1.3E+02 0.0028 25.0 4.0 44 119-171 70-113 (179)
453 PF04216 FdhE: Protein involve 22.0 22 0.00047 32.7 -0.9 30 29-58 212-249 (290)
454 TIGR03655 anti_R_Lar restricti 21.9 52 0.0011 22.1 1.2 30 30-59 3-38 (53)
455 PRK08091 ribulose-phosphate 3- 21.7 2.9E+02 0.0062 24.7 6.2 43 124-166 144-186 (228)
456 PF12637 TSCPD: TSCPD domain; 21.7 1.6E+02 0.0034 22.4 4.0 42 120-164 20-61 (95)
457 PLN03086 PRLI-interacting fact 21.7 39 0.00084 34.3 0.7 37 20-58 446-488 (567)
458 PF08996 zf-DNA_Pol: DNA Polym 21.4 40 0.00086 29.0 0.7 32 25-56 15-54 (188)
459 PRK06393 rpoE DNA-directed RNA 21.3 39 0.00085 24.1 0.5 21 29-56 6-26 (64)
460 TIGR01698 PUNP purine nucleoti 21.3 5.2E+02 0.011 23.2 7.8 50 116-169 45-94 (237)
461 PRK00750 lysK lysyl-tRNA synth 21.3 22 0.00047 35.6 -1.1 42 19-63 168-215 (510)
462 PF06397 Desulfoferrod_N: Desu 21.3 17 0.00038 22.8 -1.2 28 28-57 6-33 (36)
463 PRK08621 galactose-6-phosphate 21.2 1.2E+02 0.0026 25.1 3.4 71 53-130 7-87 (142)
464 PRK00481 NAD-dependent deacety 21.2 54 0.0012 29.2 1.5 19 147-165 194-212 (242)
465 PRK13600 putative ribosomal pr 21.1 1.1E+02 0.0023 23.0 2.8 31 124-164 32-62 (84)
466 TIGR03826 YvyF flagellar opero 21.0 33 0.00072 28.2 0.1 23 30-56 5-27 (137)
467 TIGR03181 PDH_E1_alph_x pyruva 21.0 1.5E+02 0.0033 27.9 4.5 40 121-168 144-183 (341)
468 cd02008 TPP_IOR_alpha Thiamine 20.9 3.6E+02 0.0078 22.4 6.5 40 121-169 69-109 (178)
469 PRK08666 5'-methylthioadenosin 20.9 1.6E+02 0.0035 26.5 4.5 51 114-169 35-87 (261)
470 PRK14873 primosome assembly pr 20.8 42 0.0009 34.8 0.8 43 109-151 471-517 (665)
471 PRK14057 epimerase; Provisiona 20.8 2.9E+02 0.0062 25.2 6.1 43 124-166 158-200 (254)
472 cd07037 TPP_PYR_MenD Pyrimidin 20.6 90 0.002 26.1 2.6 12 194-205 85-96 (162)
473 COG1165 MenD 2-succinyl-6-hydr 20.5 69 0.0015 32.4 2.2 43 114-165 63-105 (566)
474 TIGR01119 lacB galactose-6-pho 20.3 1.1E+02 0.0025 26.1 3.2 63 63-130 17-89 (171)
475 KOG2846|consensus 20.3 42 0.00092 31.5 0.6 30 29-58 221-253 (328)
476 cd01121 Sms Sms (bacterial rad 20.2 48 0.001 31.8 1.0 10 192-201 197-206 (372)
477 TIGR01054 rgy reverse gyrase. 20.1 71 0.0015 35.4 2.4 42 28-71 7-48 (1171)
478 KOG2593|consensus 20.0 68 0.0015 31.3 2.0 31 44-77 125-157 (436)
No 1
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=100.00 E-value=1.4e-85 Score=580.36 Aligned_cols=285 Identities=53% Similarity=0.912 Sum_probs=271.4
Q ss_pred CCccccccCCCCCCCcccccCCCCchhhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCC
Q psy5220 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGEN 80 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~ 80 (286)
|+||+++.++..++.....+...|+++|+|||+|++.+|++||+.|++|||+|+||++++|++||+.|+|+|||.||+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~e~lw~KCp~c~~~~y~~eL~~n~~vcp~c~~h~ri~A~~Ri~~llD~gsf~el~~~ 80 (294)
T COG0777 1 MSWFSRIKKKIQPNKSDSRKASRPEGLWTKCPSCGEMLYRKELESNLKVCPKCGHHMRISARERLEALLDEGSFEELDSP 80 (294)
T ss_pred CchhhhcccccCCCcchhhcccCCCCceeECCCccceeeHHHHHhhhhcccccCcccccCHHHHHHHhhCCCcceecccC
Confidence 89999874331222222356667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcE
Q psy5220 81 ILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPF 160 (286)
Q Consensus 81 ~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPl 160 (286)
+.+.|||+|+|+|.|.+||++++++|+..++||||.|+|+|.||+++++||+|+|||||++.++||+|++|.|.+.++|+
T Consensus 81 l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~ 160 (294)
T COG0777 81 LEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPL 160 (294)
T ss_pred CCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhh
Q psy5220 161 VCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240 (286)
Q Consensus 161 V~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~ 240 (286)
|++..|||+|||||+.+|+||+++..++.++++++.|+|+|+++|++||+++|+||++|++||+|.|.|||+|||||+++
T Consensus 161 v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQT 240 (294)
T COG0777 161 VLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQT 240 (294)
T ss_pred EEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcCC
Q psy5220 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKKS 285 (286)
Q Consensus 241 ~g~~l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~~ 285 (286)
+++++|++||+||+++++|+||.||++.|++.+|..+|..+...+
T Consensus 241 ire~LPegfQ~aEfLlehG~iD~iv~R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 241 IREKLPEGFQTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQP 285 (294)
T ss_pred hcccCCcchhhHHHHHHcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999887643
No 2
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=7.7e-80 Score=560.62 Aligned_cols=282 Identities=52% Similarity=0.940 Sum_probs=268.2
Q ss_pred CCccccccCCCCCCCcccccCCCCchhhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCC
Q psy5220 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGEN 80 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~ 80 (286)
|+|++++.+++...+. .++++|+++|+|||+|++.+|.++|++|++|||+|+||+++++||||+.|+|+|||.|++..
T Consensus 1 m~~~~~~~~~~~~~~~--~~~~~~~~~~~~c~~c~~~~~~~~l~~~~~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~~ 78 (285)
T TIGR00515 1 MSWIDRFKSKKKITST--RKAEVPEGVWTKCPKCGQVLYTKELERNLEVCPKCDHHMRMDARERIESLLDEGSFEEFNSH 78 (285)
T ss_pred CChHHhcccccccccc--ccCCCCCCCeeECCCCcchhhHHHHHhhCCCCCCCCCcCcCCHHHHHHHceeCCeeEEeCCc
Confidence 8998877433212222 35679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcE
Q psy5220 81 ILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPF 160 (286)
Q Consensus 81 ~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPl 160 (286)
+.+.||++|+|+++|++||++++++++++++||||+|+|+|++|+|+++||+|+|||||...++|++|++++|.++++|+
T Consensus 79 ~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPl 158 (285)
T TIGR00515 79 LEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPL 158 (285)
T ss_pred cccCccccCCcccchhHHHHHHhhccCCCCcEEEEEEEECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhh
Q psy5220 161 VCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240 (286)
Q Consensus 161 V~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~ 240 (286)
|+|+||||+|||||..+++||++++.++.+++++++|+|+|++|||+||+++++++++|+++|+|+|.|+|+||++|+++
T Consensus 159 V~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~t 238 (285)
T TIGR00515 159 IIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQT 238 (285)
T ss_pred EEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 241 ~g~~l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+++++++++++|++++++|+||.||+++|+|++|.++|+++.++
T Consensus 239 i~e~lpe~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~~ 282 (285)
T TIGR00515 239 VREKLPEGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQNL 282 (285)
T ss_pred hcCccchhcCCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999988653
No 3
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=1.6e-79 Score=560.78 Aligned_cols=284 Identities=54% Similarity=0.937 Sum_probs=268.7
Q ss_pred CCccccccCCCCCCCcccccCCCCchhhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCC
Q psy5220 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGEN 80 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~ 80 (286)
|+||++..+++..... .+++++|+++|+|||+|++.+|+++|+.|++|||+|+||+++++||||+.|+|+|||.|++.+
T Consensus 1 m~~~~~~~~~~~~~~~-~~~~~~~~~~~~~c~~c~~~~~~~~l~~~~~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~~ 79 (292)
T PRK05654 1 MSWFDKFLPKKIKSSL-PRKAEVPEGLWTKCPSCGQVLYRKELEANLNVCPKCGHHMRISARERLDLLLDEGSFVELDAE 79 (292)
T ss_pred CcchhhccCccccccc-cccCCCCCCCeeECCCccchhhHHHHHhcCCCCCCCCCCeeCCHHHHHHHHccCCccEEecCc
Confidence 8999876332222221 144679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcE
Q psy5220 81 ILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPF 160 (286)
Q Consensus 81 ~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPl 160 (286)
+.+.|||+|+|+++|++||++++++++++++||||+|+|+|++|+|+++||+|+||||+...++|++|++++|.++++|+
T Consensus 80 ~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPl 159 (292)
T PRK05654 80 LEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPL 159 (292)
T ss_pred cccCCcccCCcccccchHHHHhhhccCCCCcEEEEEEEECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhh
Q psy5220 161 VCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240 (286)
Q Consensus 161 V~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~ 240 (286)
|+|+||||+|||||+.+++||++++.++.+++++++|+|+|++|||+||+++++++++|+++|||+|.|+|+||++|+++
T Consensus 160 V~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~ 239 (292)
T PRK05654 160 VIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQT 239 (292)
T ss_pred EEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcCC
Q psy5220 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKKS 285 (286)
Q Consensus 241 ~g~~l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~~ 285 (286)
+++++++++++|++++++|+||.||+|+|+|++|.++|+++.+++
T Consensus 240 ~~e~lpe~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 240 VREKLPEGFQRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred hhhhhhhhhcCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999987643
No 4
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=100.00 E-value=4.2e-77 Score=540.85 Aligned_cols=262 Identities=40% Similarity=0.752 Sum_probs=253.8
Q ss_pred CCCCchhhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCC-CccchHHHH
Q psy5220 21 KSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFK-DNIKYSERL 99 (286)
Q Consensus 21 ~~~~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~-~~~~y~~~l 99 (286)
.++|+++|+|||+|++.+|.++|++|++|||+|+||+++++||||+.|+|+|||.|++..+.+.||++|+ |.++|.+||
T Consensus 31 ~~~p~~lw~kc~~C~~~~~~~~l~~~~~vcp~c~~h~rltAreRI~~L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl 110 (296)
T CHL00174 31 TQKYKHLWVQCENCYGLNYKKFLKSKMNICEQCGYHLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRI 110 (296)
T ss_pred CCCCCCCeeECCCccchhhHHHHHHcCCCCCCCCCCcCCCHHHHHHHHccCCccEEcCCccCcCCCccccccccchHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999999999995 789999999
Q ss_pred HHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHH
Q psy5220 100 KLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLM 179 (286)
Q Consensus 100 ~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~ 179 (286)
++++++++++++||||+|+|+|++|+|+++||+|+|||||+..++|++|++++|.+.++|+|.|.+|||+|||||+.+|+
T Consensus 111 ~~a~~~t~~~dgVVtG~G~I~Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARmQEg~~sL~ 190 (296)
T CHL00174 111 DSYQKKTGLTDAVQTGIGQLNGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQEGSLSLM 190 (296)
T ss_pred HHHHhccCCCccEEEEEEEECCEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCCCCCCCHHHHHHc
Q psy5220 180 QMAKTTAILTKLS-KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLPDGFQSSEFLLKK 258 (286)
Q Consensus 180 ~~~~~~~a~~~l~-~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~~~~~~A~~~~~~ 258 (286)
||++++.++.++. ++++|+|+|++|||+||++++++|++|++||+|+|.|+|+||+||++++|+++|++||+||+|+++
T Consensus 191 qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~lpe~fq~ae~l~~~ 270 (296)
T CHL00174 191 QMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEYLFDK 270 (296)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCcCCcccccHHHHHhC
Confidence 9999987777643 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEeCchhHHHHHHHHHHHHh
Q psy5220 259 GALDMIIDRRKLRFKIANLLALLQ 282 (286)
Q Consensus 259 G~vD~Vv~~~e~~~~l~~~L~~l~ 282 (286)
|+||.||++.+++++|.++|+++.
T Consensus 271 G~vD~iV~r~~lr~~l~~ll~~~~ 294 (296)
T CHL00174 271 GLFDLIVPRNLLKGVLSELFQLHG 294 (296)
T ss_pred cCceEEEcHHHHHHHHHHHHHhhc
Confidence 999999999999999999999874
No 5
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=6.5e-44 Score=349.45 Aligned_cols=221 Identities=24% Similarity=0.320 Sum_probs=198.9
Q ss_pred cccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEE
Q psy5220 50 CTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVF 129 (286)
Q Consensus 50 c~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~ 129 (286)
..+.+.++++++||||+.|+|+|||.|++....+.+ .+|+. | .+..++++||||+|+|+|++|+|+++
T Consensus 22 ~~r~~~~g~l~areRi~~LlD~gsF~E~~~~~~~~~-~~~~~---~--------~~~~~~dgvVtG~G~v~Gr~v~v~a~ 89 (512)
T TIGR01117 22 IEKQHAQGKMTARERLALLFDPGSFVEIDQFVKHRC-TNFGM---D--------KKELPAEGVVTGYGTIDGRLVYAFAQ 89 (512)
T ss_pred HHhHHhcCCCCHHHHHHHhcCCCcEEEecCccccCC-CCccc---c--------ccCCCCceEEEEEEEECCEEEEEEEE
Confidence 445677799999999999999999999999876643 35542 1 33467899999999999999999999
Q ss_pred cCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchh
Q psy5220 130 EFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGG 209 (286)
Q Consensus 130 d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GG 209 (286)
||+|+|||+|..+++|+.|++++|.+.++|+|+|.||||+|||||..++.++++++..+..++ +.+|+|++|+|+|+||
T Consensus 90 D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s-~~iP~Isvv~G~~~GG 168 (512)
T TIGR01117 90 DFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIAS-GVVPQISAIMGPCAGG 168 (512)
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHc-CCCcEEEEEecCCCcH
Confidence 999999999999999999999999999999999999999999999999999999987666554 6799999999999999
Q ss_pred hhhhccccccEEEEcCC-cEEEeeChhhhhhhhhccCC-CCCCCHHHHH-HcCccceEeCch-hHHHHHHHHHHHHhcC
Q psy5220 210 VSASFAFMGDIVIAEPG-ALIGFAGPRVIKNTVKEKLP-DGFQSSEFLL-KKGALDMIIDRR-KLRFKIANLLALLQKK 284 (286)
Q Consensus 210 g~~s~a~~~d~via~~~-A~i~~~gp~vi~~~~g~~l~-~~~~~A~~~~-~~G~vD~Vv~~~-e~~~~l~~~L~~l~~~ 284 (286)
++++++ ++|+++|.++ ++++++||++|++++|++++ +++++++.|. .+|++|.+++++ |+.+.++++|++|+.+
T Consensus 169 ~a~~~a-l~D~vim~~~~a~i~~aGP~vv~~~~Ge~v~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~~ 246 (512)
T TIGR01117 169 AVYSPA-LTDFIYMVDNTSQMFITGPQVIKTVTGEEVTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPSN 246 (512)
T ss_pred HHHHHH-hcCceEEeccceEEEecChHHHHhhcCcccchhhcchHHHhccccceeEEecCChHHHHHHHHHHHHhCCcC
Confidence 999988 6999999996 68999999999999999988 7899999997 589999999997 9999999999999864
No 6
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=100.00 E-value=1.8e-42 Score=313.17 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=180.2
Q ss_pred CCCCCHHHHHHhhcCCCceEEe-cCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCccc
Q psy5220 56 HMQIKARDRLNNFLDKNNFHEI-GENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFM 134 (286)
Q Consensus 56 ~~~~~ar~ri~~L~D~gsf~E~-~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~~ 134 (286)
..++++||||+.|+|+|||.|+ +..... .+ +|-++ ...++.++++||+|.|+|+|++|+|+++||+|+
T Consensus 3 ~~~ltAReRi~~LlD~gSF~E~~g~~~~~----~~----~~l~~---~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~ 71 (274)
T TIGR03133 3 FYEANARERARGLLDAGSFRELLGPFDRV----IS----PHLPR---QGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQ 71 (274)
T ss_pred cccCCHHHHHHHhcCCCcceEcccccccc----cC----cchhh---hcccCCCCCeEEEEEEEECCEEEEEEEECCCcc
Confidence 4579999999999999999999 443221 11 23333 335677899999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHh-----CCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCC--cc
Q psy5220 135 GGSMGSVVGERFIQGAQISLE-----QKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNP--TM 207 (286)
Q Consensus 135 gGs~~~~~~~K~~r~~~~A~~-----~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~--~~ 207 (286)
|||+|+.+++|+++++++|.+ .++|+|+|.||||+||||+..++.+++++++++.+++.. +|+|++|+|| |+
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~ 150 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCF 150 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Confidence 999999999999999999987 678999999999999999999999999999999999876 9999999999 89
Q ss_pred hhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhcc-CC-C-------CCCCHHHHHHcCccceEeCch--hHHHHHHH
Q psy5220 208 GGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEK-LP-D-------GFQSSEFLLKKGALDMIIDRR--KLRFKIAN 276 (286)
Q Consensus 208 GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~-l~-~-------~~~~A~~~~~~G~vD~Vv~~~--e~~~~l~~ 276 (286)
||+++ .+.++|++||+++++|+++||+||++++|++ ++ + .++++ ....+|++|.+++++ .++..+.+
T Consensus 151 GG~a~-~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~-~~~~sG~~D~~v~dd~~a~~~~~~~ 228 (274)
T TIGR03133 151 GGMGI-AAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGK-HRFLSGDADVLVEDDVDAFRAAVIA 228 (274)
T ss_pred hHHHH-HHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchH-hHhhcccceEEeCCHHHHHHHHHHH
Confidence 99986 4557999999999999999999999999964 44 2 24555 444599999999985 68888888
Q ss_pred HHHH
Q psy5220 277 LLAL 280 (286)
Q Consensus 277 ~L~~ 280 (286)
+|..
T Consensus 229 ~l~~ 232 (274)
T TIGR03133 229 ALAL 232 (274)
T ss_pred HHhc
Confidence 8765
No 7
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=100.00 E-value=1.8e-42 Score=316.29 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=178.9
Q ss_pred cCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcc
Q psy5220 54 DYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEF 133 (286)
Q Consensus 54 ~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~ 133 (286)
....++++||||+.|+|+|||.|+..... +..++ |.++ ...++.++++||||.|+|+|++|+|+++||+|
T Consensus 10 ~s~~~ltARERi~~LlD~gSF~E~~g~~~---~~~~~----~~~~---~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf 79 (301)
T PRK07189 10 RSFIEASARERAAALLDAGSFRELLGPFE---RVMSP----HLPL---QGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRF 79 (301)
T ss_pred CCceeCCHHHHHHHhcCCCcceEcccccc---cccCc----chhh---hccCCCCCCcEEEEEEEECCEEEEEEEECCCc
Confidence 34568999999999999999999944221 11222 2222 22566789999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHhCC-----CcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCC--c
Q psy5220 134 MGGSMGSVVGERFIQGAQISLEQK-----IPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNP--T 206 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~~~~-----iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~--~ 206 (286)
+|||+|+.+++|+.+++++|.+.+ +|+|+|.||||+||||+..++.+++++++++.+++.. +|+|+|+.|+ |
T Consensus 80 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc 158 (301)
T PRK07189 80 MGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGC 158 (301)
T ss_pred cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCC
Confidence 999999999999999999999999 9999999999999999999999999999999999876 9999999999 9
Q ss_pred chhhhhhccccccEEEEcCCcEEEeeChhhhhhhhh-ccCC-CC-------CCCHHHHHHcCccceEeCch-hHHHHHHH
Q psy5220 207 MGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVK-EKLP-DG-------FQSSEFLLKKGALDMIIDRR-KLRFKIAN 276 (286)
Q Consensus 207 ~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g-~~l~-~~-------~~~A~~~~~~G~vD~Vv~~~-e~~~~l~~ 276 (286)
+||++++.+ +||++||+++|+|+++||++|++++| ++++ ++ ++++.. ..+|++|.+++++ +..+. +
T Consensus 159 ~GG~a~~a~-l~D~iIm~~~a~iglaGP~VIe~~~G~e~~d~~d~~~vw~~lGG~h~-~~sG~~D~~v~dd~~a~~~--~ 234 (301)
T PRK07189 159 FGGMGIAAA-LCSYLIVSEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHR-YLSGLADALVDDDVAAFRA--A 234 (301)
T ss_pred cHHHHHHHh-cCCEEEEECCcEEeccCHHHHHHhcCCcccCHHHhcccccccCccee-eecccceEEeCCHHHHHHH--H
Confidence 999998755 68999999999999999999999999 4665 34 556422 2489999999987 43333 5
Q ss_pred HHHHHh
Q psy5220 277 LLALLQ 282 (286)
Q Consensus 277 ~L~~l~ 282 (286)
+++++.
T Consensus 235 ~~~~~~ 240 (301)
T PRK07189 235 ALALLA 240 (301)
T ss_pred HHHHHh
Confidence 555554
No 8
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=1.2e-42 Score=342.42 Aligned_cols=217 Identities=16% Similarity=0.256 Sum_probs=193.8
Q ss_pred cccccCCCCCCHHHHHHhhcCCCc-eEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEE
Q psy5220 50 CTKCDYHMQIKARDRLNNFLDKNN-FHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAV 128 (286)
Q Consensus 50 c~~~~~~~~~~ar~ri~~L~D~gs-f~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a 128 (286)
..+.+.++++++||||+.|+|+|| |.|++..... ..|.++ .++++||||+|+|+|++|+|++
T Consensus 73 v~r~~~~gkltaReRI~~LlD~gS~F~El~~lag~---------~~y~~~--------~~~dgVVtG~G~V~Gr~V~v~a 135 (569)
T PLN02820 73 VKRHRSRNKLLPRERIDRLLDPGSPFLELSQLAGH---------ELYGED--------LPSGGIVTGIGPVHGRLCMFVA 135 (569)
T ss_pred HHhhhhcCCCCHHHHHHHHcCCCCCeEEchhhccC---------Cccccc--------CCCCeEEEEEEEECCEEEEEEE
Confidence 445577799999999999999999 9999865322 124332 3679999999999999999999
Q ss_pred EcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch--hhchHhH-HHHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy5220 129 FEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM--QEGLLSL-MQMAKTTAILTKLSKKKIPFISVLTNP 205 (286)
Q Consensus 129 ~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i--~Eg~~~l-~~~~~~~~a~~~l~~~~vP~Isvv~g~ 205 (286)
+||+|+||+++..+++|++|++++|.++++|+|.|+||||+|| |++..++ .+++++++++.+++..++|+|+||+|+
T Consensus 136 ~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~ 215 (569)
T PLN02820 136 NDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGS 215 (569)
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999 4454443 578999999899988899999999999
Q ss_pred cchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC-CCCCCHHHHH-HcCccceEeCch-hHHHHHHHHHHHHh
Q psy5220 206 TMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP-DGFQSSEFLL-KKGALDMIIDRR-KLRFKIANLLALLQ 282 (286)
Q Consensus 206 ~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~-~~~~~A~~~~-~~G~vD~Vv~~~-e~~~~l~~~L~~l~ 282 (286)
|+||++++++|++++++++++++|+++||++|+.++|++++ +++++|+.|. .+|++|.+++++ +..+.++++|++|+
T Consensus 216 ~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~Ge~v~~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~Lp 295 (569)
T PLN02820 216 CTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEVSAEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNLH 295 (569)
T ss_pred CChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcCcccCHHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhcC
Confidence 99999999998878888899999999999999999999988 7899999998 489999999998 88899999999997
Q ss_pred c
Q psy5220 283 K 283 (286)
Q Consensus 283 ~ 283 (286)
.
T Consensus 296 ~ 296 (569)
T PLN02820 296 L 296 (569)
T ss_pred c
Confidence 5
No 9
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=1e-40 Score=321.57 Aligned_cols=218 Identities=25% Similarity=0.385 Sum_probs=197.8
Q ss_pred cccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEE
Q psy5220 50 CTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVF 129 (286)
Q Consensus 50 c~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~ 129 (286)
..+.+.++++++||||+.|+|+|||.|++.+..+... . | ....+++++|||.|+|+|++|.|+++
T Consensus 34 ~~~~~~~GkltaReRv~~LlD~Gsf~El~~~a~~~~~-~------~--------~~~~~~dGvVtG~G~i~Gr~~~v~a~ 98 (526)
T COG4799 34 VEKQHGKGKLTARERVELLLDPGSFLELGALAGHRMG-G------D--------ANELPGDGVVTGIGTINGRKVFVFAN 98 (526)
T ss_pred hhhccccCcCcHHHHHHHHcCCCchhhhhhhhhcccc-c------c--------cccCCCCeeEEeeeeeCCeEEEEEEe
Confidence 3455778999999999999999999999998766420 0 1 12347999999999999999999999
Q ss_pred cCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchh
Q psy5220 130 EFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGG 209 (286)
Q Consensus 130 d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GG 209 (286)
|++++||++++.+++|+.|++++|.+.++|+|.|.||||+|++||..++.+++++|.+..++|.. +|+|++|+|+|.||
T Consensus 99 D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~-IPqIsvv~G~c~gG 177 (526)
T COG4799 99 DFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGV-IPQISVVMGPCAGG 177 (526)
T ss_pred cCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccCccccccchHHHHHHHHhccC-CCEEEEEEecCccc
Confidence 99999999999999999999999999999999999999999999988888899999988888755 99999999999999
Q ss_pred hhhhccccccEEEEcCC-cEEEeeChhhhhhhhhccCC-CCCCCHHHHHHc-CccceEeCch-hHHHHHHHHHHHHhcC
Q psy5220 210 VSASFAFMGDIVIAEPG-ALIGFAGPRVIKNTVKEKLP-DGFQSSEFLLKK-GALDMIIDRR-KLRFKIANLLALLQKK 284 (286)
Q Consensus 210 g~~s~a~~~d~via~~~-A~i~~~gp~vi~~~~g~~l~-~~~~~A~~~~~~-G~vD~Vv~~~-e~~~~l~~~L~~l~~~ 284 (286)
++|+++| +|++||.++ +.|+++||.+|+.++|++++ +++++|+.|.+. |.+|.+.+++ +..+.++++|+|||.+
T Consensus 178 gaY~pal-~D~~imv~~~~~mfltGP~~ik~vtGe~V~~e~LGGa~vh~~~sGva~~~a~dd~~Ai~~vr~~lsylp~~ 255 (526)
T COG4799 178 GAYSPAL-TDFVIMVRDQSYMFLTGPPVIKAVTGEEVSAEELGGAQVHARKSGVADLLAEDDEDAIELVRRLLSYLPSN 255 (526)
T ss_pred ccccccc-cceEEEEcCCccEEeeCHHHHHhhcCcEeehhhccchhhhcccccceeeeecCHHHHHHHHHHHHHhcCcc
Confidence 9999996 788888777 99999999999999999987 889999999975 9999999997 9999999999999863
No 10
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=8.5e-41 Score=327.36 Aligned_cols=213 Identities=33% Similarity=0.555 Sum_probs=189.9
Q ss_pred cCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcc
Q psy5220 54 DYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEF 133 (286)
Q Consensus 54 ~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~ 133 (286)
+.++++++|+||+.|+|+|||.|++....+... . + ..++ .++++||||+|+|+|++|+|+++||+|
T Consensus 3 ~~~Gk~~areRi~~L~D~gSF~E~~~~~~~~~~-~------~------~~~~-~p~~gvvtG~G~I~G~~v~v~a~D~t~ 68 (493)
T PF01039_consen 3 HARGKLTARERIDLLLDPGSFRELGDLAGAARY-K------F------GREK-TPGDGVVTGIGKINGRPVVVIAQDFTV 68 (493)
T ss_dssp HHTTEEEHHHHHHHHSGTTEBEEESTTHHTTHC-G------G------GGGH--TTTTEEEEEEEETTEEEEEEEEETTS
T ss_pred cccCCcCHHHHHHHhcCCCCCcCchHHHhcccc-c------c------cccc-CCCCcEEEEEEeeCCeeEEEEEeccce
Confidence 567899999999999999999999986543210 1 1 1122 589999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc--chhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhh
Q psy5220 134 MGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA--RMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVS 211 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa--~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~ 211 (286)
+|||++..+++|+.+++++|.+.++|+|.|.||||+ |||||..++.++++++.++.+++. ++|+|++++|+|+||++
T Consensus 69 ~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A 147 (493)
T PF01039_consen 69 LGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISVVTGPCTGGGA 147 (493)
T ss_dssp GGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEEEESEEEGGGG
T ss_pred ecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEEEccccccchh
Confidence 999999999999999999999999999999999999 999999999999999999999987 99999999999999998
Q ss_pred hhccccccEEEEcCC-cEEEeeChhhhhhhhhccCC-CCCCCHHHHH-HcCccceEeCch-hHHHHHHHHHHHHh
Q psy5220 212 ASFAFMGDIVIAEPG-ALIGFAGPRVIKNTVKEKLP-DGFQSSEFLL-KKGALDMIIDRR-KLRFKIANLLALLQ 282 (286)
Q Consensus 212 ~s~a~~~d~via~~~-A~i~~~gp~vi~~~~g~~l~-~~~~~A~~~~-~~G~vD~Vv~~~-e~~~~l~~~L~~l~ 282 (286)
+..+ ++|++|+.++ +.|+++||++|++++|++++ +++++++.|. .+|++|.+++++ ++.+.++++|++|+
T Consensus 148 ~~~~-~~d~~i~~~~~a~i~l~GP~vv~~~~Ge~~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp 221 (493)
T PF01039_consen 148 YLAA-LSDFVIMVKGTARIFLAGPRVVESATGEEVDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLP 221 (493)
T ss_dssp HHHH-HSSEEEEETTTCEEESSTHHHHHHHHSSCTSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred hccc-ccCccccCccceEEEeccccccccccCccccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhcccc
Confidence 8666 5789898887 99999999999999999988 6678898887 689999999987 89999999999999
No 11
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=4.6e-37 Score=301.14 Aligned_cols=208 Identities=21% Similarity=0.264 Sum_probs=172.7
Q ss_pred cccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEE
Q psy5220 46 NQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLV 125 (286)
Q Consensus 46 ~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~ 125 (286)
.+.++|. +++..+++|+||+.|+|++||.|++.. +++++|||+|+|+|++|+
T Consensus 267 l~~~iP~-~~~~~~d~r~~i~~l~D~~sf~El~~~---------------------------~g~~vVtG~gri~G~~V~ 318 (512)
T TIGR01117 267 LYDLLPD-NPNKPYDMRDVITAIVDNGDYLEVQPY---------------------------YAPNIITCFARINGQSVG 318 (512)
T ss_pred hhhhCCC-CCCCCCCHHHHHHHhCCCCceEEeecc---------------------------CCCcEEEEEEEECCEEEE
Confidence 4567885 566789999999999999999999762 378999999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch---hhchHhHHHHHHHHHHHHHHhcCCCCEEEEE
Q psy5220 126 VAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM---QEGLLSLMQMAKTTAILTKLSKKKIPFISVL 202 (286)
Q Consensus 126 v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i---~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv 202 (286)
|++||+++++|++++.+++|++|++++|+++++|||+|+||+|+.. +|-...+.+++++ +..+++++||+|+||
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~---~~a~~~~~vP~isvi 395 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKV---LYAYSEATVPKVTII 395 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHH---HHHHHhCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999965 3311112344554 455677899999999
Q ss_pred cCCcchhhhhhcc---ccccEEEEcCCcEEEeeChhhhhhhh-hccC-----------------CCCCCCHHHHHHcCcc
Q psy5220 203 TNPTMGGVSASFA---FMGDIVIAEPGALIGFAGPRVIKNTV-KEKL-----------------PDGFQSSEFLLKKGAL 261 (286)
Q Consensus 203 ~g~~~GGg~~s~a---~~~d~via~~~A~i~~~gp~vi~~~~-g~~l-----------------~~~~~~A~~~~~~G~v 261 (286)
+|+++||+++.++ +.+|+++|||+|+++++||+....++ +.++ .+++.++.+++++|+|
T Consensus 396 ~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~v 475 (512)
T TIGR01117 396 TRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYV 475 (512)
T ss_pred cCCCchHHHHHhccccCCCCEEEEcCCCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCC
Confidence 9999999875443 34899999999999999999844433 2211 1235678888899999
Q ss_pred ceEeCchhHHHHHHHHHHHHhcC
Q psy5220 262 DMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 262 D~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
|.||+|+|||+.|.++|+.+.+.
T Consensus 476 D~VI~P~~tR~~l~~~l~~~~~~ 498 (512)
T TIGR01117 476 DDVIEPKQTRPKIVNALAMLESK 498 (512)
T ss_pred CeeEChHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988653
No 12
>KOG0540|consensus
Probab=100.00 E-value=7.9e-38 Score=291.73 Aligned_cols=211 Identities=22% Similarity=0.242 Sum_probs=173.5
Q ss_pred cccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEE
Q psy5220 46 NQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLV 125 (286)
Q Consensus 46 ~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~ 125 (286)
...+.| ..+...+++|+.|..++|.+.|.|+.. .+++++|||||+|+|++|+
T Consensus 301 ld~Iv~-~~~~~~yd~r~vi~~iVD~~~f~E~~~---------------------------~y~~tlvtGfarlnG~tVg 352 (536)
T KOG0540|consen 301 LDGIVP-LNLTKAYDVREVIARIVDGSRFFEFKP---------------------------GYGDTLVTGFARLNGRTVG 352 (536)
T ss_pred hccccc-cccccccchHhHHHhhcccchhhhhcc---------------------------ccccceeeeeeeECCEEEE
Confidence 344554 244456666666666666666666654 4699999999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHH-HHHHHhcCCCCEEEEEcC
Q psy5220 126 VAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTA-ILTKLSKKKIPFISVLTN 204 (286)
Q Consensus 126 v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~-a~~~l~~~~vP~Isvv~g 204 (286)
|++|||.|++|+|+++++.|.+||+++|.+++||+|+|++++| +|+++...++++++.-+ .+...+++.||+|++++|
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~G-fm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~ 431 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCDQRNIPLIFLQNITG-FMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITG 431 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHHhcCCcEEEEEccCC-ccccchhhhhchhhhhhhhhhhhhhccCceEEEEec
Confidence 9999999999999999999999999999999999999999999 77666666777776544 456678899999999999
Q ss_pred Ccchhhhh--hccccccEEEEcCCcEEEeeCh-h---hhhhhhhcc-------CCCCCCCHHHHHHcCccceEeCchhHH
Q psy5220 205 PTMGGVSA--SFAFMGDIVIAEPGALIGFAGP-R---VIKNTVKEK-------LPDGFQSSEFLLKKGALDMIIDRRKLR 271 (286)
Q Consensus 205 ~~~GGg~~--s~a~~~d~via~~~A~i~~~gp-~---vi~~~~g~~-------l~~~~~~A~~~~~~G~vD~Vv~~~e~~ 271 (286)
++|||.+. +.++++|+++|||+|+|++||. + ++.++..++ ..|.|..+.+++.+||+|.||+|.++|
T Consensus 432 ~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f~npy~a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 432 GSYGGNYAMCSRGYSGDINYAWPNARIAVMGGKQAANVIFQITLEKAVALKAPYIEKFGNPYYAAARGWDDGIIDPSDTR 511 (536)
T ss_pred CccCCcccccccccCCceeEEcccceeeeccccchhhhhhhhhhhhhhhhcchHHHHhcCccHHHHhhccccccChhHhh
Confidence 99998766 6778999999999999999998 3 455553222 224566677778999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy5220 272 FKIANLLALLQKKS 285 (286)
Q Consensus 272 ~~l~~~L~~l~~~~ 285 (286)
..|...|+.+.+.|
T Consensus 512 ~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 512 KVLGLDLQAAANKP 525 (536)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988765
No 13
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=2.3e-35 Score=284.59 Aligned_cols=232 Identities=19% Similarity=0.218 Sum_probs=185.4
Q ss_pred CCCchhhhcccc--cccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHH
Q psy5220 22 SIPKGLWIKCLS--CKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERL 99 (286)
Q Consensus 22 ~~~~~~~~~c~~--c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l 99 (286)
++|.+.-.++|. ......+.+ +....+.|. +.+.+|++|+.|..|+|.+||.|+...
T Consensus 251 ylp~~~~~~~p~~~~~~~~~~~~-~~l~~ivP~-d~~~pYDvrevI~rl~D~~~F~E~~~~------------------- 309 (526)
T COG4799 251 YLPSNNREPPPVVPTPDEPDRDD-EELDSIVPD-DPRKPYDVREVIARLVDDGEFLEFKAG------------------- 309 (526)
T ss_pred hcCccCCCCCCcCCCCCCcccCh-hhhcccCCC-CCCccccHHHHHHHhcCCccHHHHHhh-------------------
Confidence 345544445552 333333322 345678886 666799999999999999999999872
Q ss_pred HHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch---hhchH
Q psy5220 100 KLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM---QEGLL 176 (286)
Q Consensus 100 ~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i---~Eg~~ 176 (286)
++.++|||++||+|++|+|+||++..++|.++.++++|.+||+++|+.++||||+|+|++|+.. ||-..
T Consensus 310 --------~a~~iV~GfaRi~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~g 381 (526)
T COG4799 310 --------YAKNIVTGFARIDGRPVGIIANQPRHLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGG 381 (526)
T ss_pred --------hCcceEEEEEEECCEEEEEEecCccccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhCh
Confidence 4889999999999999999999999999999999999999999999999999999999999987 44222
Q ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcc---ccccEEEEcCCcEEEeeChhhhhhhhh-ccC-------
Q psy5220 177 SLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFA---FMGDIVIAEPGALIGFAGPRVIKNTVK-EKL------- 245 (286)
Q Consensus 177 ~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a---~~~d~via~~~A~i~~~gp~vi~~~~g-~~l------- 245 (286)
-+...++++. ++++++||+|++|+|.+|||+++.++ +.+|+++|||+|++++|||+....++- .++
T Consensus 382 iik~Gakl~~---A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~ 458 (526)
T COG4799 382 IIKHGAKLLY---AVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPE 458 (526)
T ss_pred HHHhhhHHHh---hHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeeecCHHHHHHHHHHHHhhcccCch
Confidence 2455677755 45678999999999999999976443 567999999999999999997444322 111
Q ss_pred --------------CCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcCC
Q psy5220 246 --------------PDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKKS 285 (286)
Q Consensus 246 --------------~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~~ 285 (286)
.+++..+.+++++|++|.|++|.++|..|.+.|+.+.++|
T Consensus 459 ~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~ 512 (526)
T COG4799 459 EREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKP 512 (526)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCc
Confidence 1223466677789999999999999999999999998753
No 14
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=100.00 E-value=4.3e-34 Score=257.11 Aligned_cols=207 Identities=17% Similarity=0.155 Sum_probs=163.1
Q ss_pred cccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEE
Q psy5220 50 CTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVF 129 (286)
Q Consensus 50 c~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~ 129 (286)
+...++.+++++|+||+.|+|+ |.|+..+ ..|+ .+.+||||+|+|+|++|+|++|
T Consensus 8 v~~ar~~~r~~are~I~~L~D~--F~El~g~------~~~~-----------------~d~~vItG~gri~Gr~V~via~ 62 (256)
T PRK12319 8 LKEARDQGRLTTLDYATLIFDD--FMELHGD------RHFR-----------------DDGAVVGGIGYLAGQPVTVVGI 62 (256)
T ss_pred HHHhccCCCCCHHHHHHHhCch--heeccCC------CCCC-----------------CCCcEEEEEEEECCEEEEEEEe
Confidence 3446888999999999999996 9998641 1232 2557999999999999999998
Q ss_pred cCc--------ccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEE
Q psy5220 130 EFE--------FMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISV 201 (286)
Q Consensus 130 d~~--------~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isv 201 (286)
|.. ..+|++++.+++|+.|++++|.++++|||+|+||+|+++........+...+++.+..+++.+||+|+|
T Consensus 63 ~~~~~~~d~~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsV 142 (256)
T PRK12319 63 QKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAI 142 (256)
T ss_pred ccCCccccceeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEE
Confidence 763 478999999999999999999999999999999999998332111112234555677888889999999
Q ss_pred EcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC-------CCCCCHHHHHHcCccceEeCch-----h
Q psy5220 202 LTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP-------DGFQSSEFLLKKGALDMIIDRR-----K 269 (286)
Q Consensus 202 v~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~-------~~~~~A~~~~~~G~vD~Vv~~~-----e 269 (286)
|+|+|+|||++.++ .+|+++|||++.+++++|+....++..+-. ....+|..+++.|+||.||++. +
T Consensus 143 I~G~~~gGgA~a~~-~~D~v~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~~~g~iD~ii~e~~~~~~~ 221 (256)
T PRK12319 143 IIGEGGSGGALALA-VADQVWMLENTMYAVLSPEGFASILWKDGSRATEAAELMKITAGELLEMGVVDKVIPEHGYFSSE 221 (256)
T ss_pred EeCCcCcHHHHHhh-cCCEEEEecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHCCCCcEecCCCCCCHHH
Confidence 99999999998887 589999999999999999987776543311 1124899999999999999742 2
Q ss_pred ----HHHHHHHHHHHHh
Q psy5220 270 ----LRFKIANLLALLQ 282 (286)
Q Consensus 270 ----~~~~l~~~L~~l~ 282 (286)
+++.+.+.|..|.
T Consensus 222 ~~~~~~~~~~~~l~~l~ 238 (256)
T PRK12319 222 IIDMIKKNLIEELAQLS 238 (256)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4455555555444
No 15
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=6.2e-33 Score=254.87 Aligned_cols=203 Identities=15% Similarity=0.120 Sum_probs=165.6
Q ss_pred cccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEE
Q psy5220 36 TILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVI 115 (286)
Q Consensus 36 ~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG 115 (286)
+.+|. +|.. +..+...+|+.|....++|+.|+| +|.|+..+. .|. .+.++|||
T Consensus 49 ~~~~~-~l~~-w~~v~~ar~~~Rp~~~d~i~~l~d--~f~EL~gd~------~~~-----------------dd~aiVtG 101 (316)
T TIGR00513 49 KKIFS-NLGA-WQRLQLARHPDRPYTLDYIELIFD--DFFELAGDR------AYA-----------------DDKAIVGG 101 (316)
T ss_pred HHHHh-cCCH-HHHHHHHhCCCCCchHHHHHHHhh--hheeecccc------CCC-----------------CCCceEEE
Confidence 34555 4555 444556788888888899999999 499998642 232 27899999
Q ss_pred EEEEcCeeEEEEEEcCc--------ccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHH
Q psy5220 116 KGSIMNLPLVVAVFEFE--------FMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAI 187 (286)
Q Consensus 116 ~g~i~G~~v~v~a~d~~--------~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a 187 (286)
+|+|+|++|+|+++|+. ..+|++++.+++|++|++++|+++++|||+|+||+|+++..+.....+...+++.
T Consensus 102 ~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~ 181 (316)
T TIGR00513 102 IARLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARN 181 (316)
T ss_pred EEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999985 5789999999999999999999999999999999999985443333334456667
Q ss_pred HHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC------C-CCCCHHHHHHcCc
Q psy5220 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP------D-GFQSSEFLLKKGA 260 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~------~-~~~~A~~~~~~G~ 260 (286)
+..+++..||+||||+|+++|||+++++ .+|+++|||+|.+++++|+....++..+-. + -..+|..+++.|+
T Consensus 182 l~a~s~~~VP~IsVViGeggsGGAla~~-~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~ 260 (316)
T TIGR00513 182 LREMARLGVPVICTVIGEGGSGGALAIG-VGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGL 260 (316)
T ss_pred HHHHHcCCCCEEEEEecccccHHHhhhc-cCCEEEEecCceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCC
Confidence 7778889999999999999999988776 589999999999999999987776544311 1 1357999999999
Q ss_pred cceEeC
Q psy5220 261 LDMIID 266 (286)
Q Consensus 261 vD~Vv~ 266 (286)
||.||+
T Consensus 261 iD~II~ 266 (316)
T TIGR00513 261 IDSIIP 266 (316)
T ss_pred CeEecc
Confidence 999997
No 16
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=100.00 E-value=2.8e-33 Score=257.17 Aligned_cols=212 Identities=17% Similarity=0.077 Sum_probs=172.8
Q ss_pred hhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNT 106 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~ 106 (286)
|..|..+-.+.+|. +|.. +......+|+.|++++++|+.|+|+ |.|+..+. .|.
T Consensus 43 l~~~~~~~~~~~~~-~l~~-w~~v~~aR~~~Rp~~~d~i~~l~d~--f~El~gd~------~~~---------------- 96 (322)
T CHL00198 43 FQRKLRILKKEIFY-SLTP-LQRLHLVRQSERPTTLDYIPYILDE--WIELHGDR------GGS---------------- 96 (322)
T ss_pred HHHHHHHHHHHHHh-cCCH-HHHHHhhcCCCCCCHHHHHHHHhHH--HHHHcccc------ccC----------------
Confidence 34444444556676 5555 4666678999999999999999994 99988742 333
Q ss_pred CCCCcEEEEEEEEcCeeEEEEEEcCc--------ccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhH
Q psy5220 107 NETDALIVIKGSIMNLPLVVAVFEFE--------FMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSL 178 (286)
Q Consensus 107 ~~~~~vvtG~g~i~G~~v~v~a~d~~--------~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l 178 (286)
.+.++|||+|+|+|++|+|+++|++ ..+|++++.+++|+.|++++|.++++|||+|+||+|+++..+....
T Consensus 97 -dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~ 175 (322)
T CHL00198 97 -DDPALVGGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKL 175 (322)
T ss_pred -CCCceEEEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHH
Confidence 2789999999999999999999995 4789999999999999999999999999999999999983222212
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC------C-CCCC
Q psy5220 179 MQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP------D-GFQS 251 (286)
Q Consensus 179 ~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~------~-~~~~ 251 (286)
.+...+.+.+..+++..||+|+||+|+++|||++++++ +|+++|+++|.+++++|+....++..+-. + -..+
T Consensus 176 G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~-aD~V~m~e~a~~sVisPEg~a~Il~~d~~~a~~aA~~~~it 254 (322)
T CHL00198 176 GQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGI-GDSIMMLEYAVYTVATPEACAAILWKDSKKSLDAAEALKIT 254 (322)
T ss_pred hHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhc-CCeEEEeCCeEEEecCHHHHHHHHhcchhhHHHHHHHcCCC
Confidence 23345556677788899999999999999999887774 89999999999999999998777655422 1 1368
Q ss_pred HHHHHHcCccceEeC
Q psy5220 252 SEFLLKKGALDMIID 266 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~ 266 (286)
|..+++.|+||.||+
T Consensus 255 a~dL~~~giiD~ii~ 269 (322)
T CHL00198 255 SEDLKVLGIIDEIIP 269 (322)
T ss_pred HHHHHhCCCCeEecc
Confidence 999999999999997
No 17
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=5e-33 Score=274.36 Aligned_cols=204 Identities=15% Similarity=0.168 Sum_probs=168.5
Q ss_pred cccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEE
Q psy5220 46 NQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLV 125 (286)
Q Consensus 46 ~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~ 125 (286)
...++|. +.+.++++|+.|+.|+|.+||.|+... ++.++|||+|+|+|++|+
T Consensus 323 L~~ivP~-~~~~~yD~r~vi~~ivD~~sf~E~~~~---------------------------~g~~iVtG~aRi~G~~Vg 374 (569)
T PLN02820 323 LRGIVPA-DHKQSFDVRSVIARIVDGSEFDEFKKN---------------------------YGTTLVTGFARIYGQPVG 374 (569)
T ss_pred HhhccCC-CCCCCCCHHHHHHHhcCCceeEEeccc---------------------------CCCcEEEEEEEECCEEEE
Confidence 4678885 777799999999999999999999873 388999999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch---hhchHhHHHHHHHHHHHHHHhcCCCCEEEEE
Q psy5220 126 VAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM---QEGLLSLMQMAKTTAILTKLSKKKIPFISVL 202 (286)
Q Consensus 126 v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i---~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv 202 (286)
|++|| |++..++++|++||+++|++++||||+|+|++|+++ +|........+++ +.+++++.||+|+||
T Consensus 375 vvAn~-----g~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l---~~A~a~~~VP~isvi 446 (569)
T PLN02820 375 IIGNN-----GILFTESALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKM---VMAVACAKVPKITII 446 (569)
T ss_pred EEEEC-----CccCHHHHHHHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHH---HHHHHhCCCCEEEEE
Confidence 99997 889999999999999999999999999999999998 4432223334554 455677899999999
Q ss_pred cCCcchhhhhhcc---ccccEEEEcCCcEEEeeChhhhhhhhh-ccC----------C---------------CCCCCHH
Q psy5220 203 TNPTMGGVSASFA---FMGDIVIAEPGALIGFAGPRVIKNTVK-EKL----------P---------------DGFQSSE 253 (286)
Q Consensus 203 ~g~~~GGg~~s~a---~~~d~via~~~A~i~~~gp~vi~~~~g-~~l----------~---------------~~~~~A~ 253 (286)
+|++||||++.++ +.+|+++|||+|+++++||+....++. .++ . ++..++.
T Consensus 447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 526 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPY 526 (569)
T ss_pred ECCcchHHHHHhcCcCCCCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHH
Confidence 9999999876543 456999999999999999987444322 111 0 1124555
Q ss_pred HHHHcCccceEeCchhHHHHHHHHHHHHhcCC
Q psy5220 254 FLLKKGALDMIIDRRKLRFKIANLLALLQKKS 285 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~~ 285 (286)
+++++|+||.||+|+|||+.|.+.|+.+.+.|
T Consensus 527 ~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~~ 558 (569)
T PLN02820 527 YSTARLWDDGVIDPADTRRVLGLCLSAALNRS 558 (569)
T ss_pred HHHHcCCcCcccCHHHHHHHHHHHHHHhhcCC
Confidence 67789999999999999999999999887654
No 18
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=100.00 E-value=6.1e-33 Score=255.21 Aligned_cols=213 Identities=16% Similarity=0.120 Sum_probs=170.6
Q ss_pred hhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNT 106 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~ 106 (286)
|..|..+-.+.+|. +|.. +......+|+.++..+++|+.|+| +|.|+..+- .|.|
T Consensus 40 l~~~~~~~~~~~~~-~l~~-w~~v~~ar~~~Rp~~~d~I~~l~d--~f~El~gdr------~~~d--------------- 94 (319)
T PRK05724 40 LEKKLEELTKKIYS-NLTP-WQKVQLARHPQRPYTLDYIELLFT--DFTELHGDR------AFAD--------------- 94 (319)
T ss_pred HHHHHHHHHHHHhc-CCCH-HHhhhcccCCCCCCHHHHHHHHhh--HHHHHcCCc------CCCC---------------
Confidence 33444444556776 5565 445556788888888999999999 599997631 2432
Q ss_pred CCCCcEEEEEEEEcCeeEEEEEEcCc--------ccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhH
Q psy5220 107 NETDALIVIKGSIMNLPLVVAVFEFE--------FMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSL 178 (286)
Q Consensus 107 ~~~~~vvtG~g~i~G~~v~v~a~d~~--------~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l 178 (286)
+.++|||+|+|+|++|+|+++|++ ..+|++++.+++|++|++++|+++++|||+|+||+|+++..+....
T Consensus 95 --d~aiV~G~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~ 172 (319)
T PRK05724 95 --DKAIVGGLARLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEER 172 (319)
T ss_pred --CCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhc
Confidence 689999999999999999999994 6899999999999999999999999999999999999983222211
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC-------CCCCC
Q psy5220 179 MQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP-------DGFQS 251 (286)
Q Consensus 179 ~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~-------~~~~~ 251 (286)
.+...+++.+.++++++||+|+||+|+++|||++++++ +|+++|||+|.+++++|+....++..+-. .-..+
T Consensus 173 G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~-aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~~aae~~~it 251 (319)
T PRK05724 173 GQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGV-GDRVLMLEYSTYSVISPEGCASILWKDASKAPEAAEAMKIT 251 (319)
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhc-cCeeeeecCceEeecCHHHHHHHHhcCchhHHHHHHHcCCC
Confidence 23345566778888999999999999999999887774 89999999999999999987776644311 12368
Q ss_pred HHHHHHcCccceEeCc
Q psy5220 252 SEFLLKKGALDMIIDR 267 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~ 267 (286)
|..+++.|+||.||+.
T Consensus 252 a~~l~~~g~iD~II~E 267 (319)
T PRK05724 252 AQDLKELGIIDEIIPE 267 (319)
T ss_pred HHHHHHCCCceEeccC
Confidence 9999999999999973
No 19
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=4.7e-33 Score=272.78 Aligned_cols=207 Identities=21% Similarity=0.241 Sum_probs=157.9
Q ss_pred ccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEE
Q psy5220 47 QQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVV 126 (286)
Q Consensus 47 ~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v 126 (286)
..+.|. +++.++++|+.|+.++|.+||+|+... ++.++|||+|||+|+||+|
T Consensus 247 ~~~~P~-~~~~~yD~r~ii~~i~D~~~f~E~~~~---------------------------~g~~~vtg~arl~G~pVGi 298 (493)
T PF01039_consen 247 DSIIPD-DRRRPYDMRDIIARIVDDGSFFELKPG---------------------------YGKNIVTGFARLGGRPVGI 298 (493)
T ss_dssp HGCS-S-STTS---HHHHHHHHSGGGBEEEESTT---------------------------SSTTEEEEEEEETTEEEEE
T ss_pred cccccc-ccCCCCCcceeeEecccCCCceecccc---------------------------ccCCeEEeeeeeCCcceEE
Confidence 477774 566789999999999999999999872 3789999999999999999
Q ss_pred EEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch---hhchHhHHHHHHHHHHHHHHhcCCCCEEEEEc
Q psy5220 127 AVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM---QEGLLSLMQMAKTTAILTKLSKKKIPFISVLT 203 (286)
Q Consensus 127 ~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i---~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~ 203 (286)
++||+.+.+|++++++++|.+||+++|++++||||+|+|++|+.. +|....+...+++ +.++++++||+|+||+
T Consensus 299 ian~~~~~~G~~~~~~a~K~arfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~---~~a~~~~~vP~itvi~ 375 (493)
T PF01039_consen 299 IANNPRQRAGALDPDGARKAARFIRLCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARL---LYALAEATVPKITVIV 375 (493)
T ss_dssp EEE-TTCGGGEB-HHHHHHHHHHHHHHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHH---HHHHHHH-S-EEEEEE
T ss_pred EEeccccccccCChHHHHHHHHHHHHHHhhCCceEEEeecccccccchhhhcchHHHHHHH---HHHHHcCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999988 2211112334555 4555667999999999
Q ss_pred CCcchhhhhhccc---cccEEEEcCCcEEEeeChhhhhhhhh-ccCC---------------------CCCCCHHHHHHc
Q psy5220 204 NPTMGGVSASFAF---MGDIVIAEPGALIGFAGPRVIKNTVK-EKLP---------------------DGFQSSEFLLKK 258 (286)
Q Consensus 204 g~~~GGg~~s~a~---~~d~via~~~A~i~~~gp~vi~~~~g-~~l~---------------------~~~~~A~~~~~~ 258 (286)
|.+|||+++.++. ..|+++|||+|++++++|+....+.. .++. ++..++...+..
T Consensus 376 ~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 455 (493)
T PF01039_consen 376 RKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASR 455 (493)
T ss_dssp EEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHT
T ss_pred CCccCcchhhhcccccchhhhhhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhc
Confidence 9999999865552 35899999999999999998544332 1110 112566677789
Q ss_pred CccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 259 GALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 259 G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
|++|.|++|+++|+.|...|+.+.++
T Consensus 456 ~~~D~ii~p~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 456 GYVDDIIDPAETRKVLIAALEMLWQK 481 (493)
T ss_dssp TSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999988664
No 20
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=100.00 E-value=2e-32 Score=256.98 Aligned_cols=205 Identities=15% Similarity=0.090 Sum_probs=169.1
Q ss_pred ccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEE
Q psy5220 35 KTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIV 114 (286)
Q Consensus 35 ~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvt 114 (286)
.+.+|. +|.. +..+.-.+|..|++..+.|+.|+| +|.|+..+. .|.| +.++||
T Consensus 118 ~~~i~~-~Lt~-wq~vq~aRhp~RP~~~d~I~~i~d--df~EL~Gdr------~~~d-----------------D~aIVt 170 (431)
T PLN03230 118 RRELYS-RLTP-VQRLSVARHPNRPTFLDHVLNMTD--KWVELHGDR------AGFD-----------------DPAIVC 170 (431)
T ss_pred HHHHHh-cCCH-HHHHHHHhCCCCCCHHHHHHHhhh--HHhhhcCcc------cCCC-----------------CCCeEE
Confidence 345555 4554 555666899999999999999999 499999853 3433 899999
Q ss_pred EEEEEcCeeEEEEEEcCccc--------ccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHH
Q psy5220 115 IKGSIMNLPLVVAVFEFEFM--------GGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTA 186 (286)
Q Consensus 115 G~g~i~G~~v~v~a~d~~~~--------gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~ 186 (286)
|+|+|+|++|+|+++|+... .|++++++++|++|++++|.++++|||+|+||+|+++..+.....+...+++
T Consensus 171 G~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr 250 (431)
T PLN03230 171 GIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAF 250 (431)
T ss_pred EEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHH
Confidence 99999999999999998653 5999999999999999999999999999999999998544333333455667
Q ss_pred HHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC------C-CCCCHHHHHHcC
Q psy5220 187 ILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP------D-GFQSSEFLLKKG 259 (286)
Q Consensus 187 a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~------~-~~~~A~~~~~~G 259 (286)
.+..+++.+||+|+||+|+++|||++.++ ++|+++||++|.+++++|+....++..+-. + -..+|..+++.|
T Consensus 251 ~l~ams~l~VPiISVViGeGgSGGAlalg-~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAealkitA~dL~~~G 329 (431)
T PLN03230 251 NLREMFGLRVPIIATVIGEGGSGGALAIG-CGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEALRITAAELVKLG 329 (431)
T ss_pred HHHHHhcCCCCEEEEEeCCCCcHHHHHhh-cCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHHcCCCHHHHHhCC
Confidence 78888899999999999999888887665 689999999999999999997777654311 1 136899999999
Q ss_pred ccceEeCc
Q psy5220 260 ALDMIIDR 267 (286)
Q Consensus 260 ~vD~Vv~~ 267 (286)
+||.||+.
T Consensus 330 iID~II~E 337 (431)
T PLN03230 330 VVDEIVPE 337 (431)
T ss_pred CCeEeccC
Confidence 99999973
No 21
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.97 E-value=2.8e-31 Score=262.15 Aligned_cols=195 Identities=15% Similarity=0.061 Sum_probs=162.4
Q ss_pred ccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEE
Q psy5220 47 QQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVV 126 (286)
Q Consensus 47 ~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v 126 (286)
+..+...+|..|++++++|..++| +|+|+..+. .|. .+.+||||+|+|+|++|+|
T Consensus 149 werV~~aR~p~RP~~~Dyi~~i~d--df~EL~Gdr------~~~-----------------dD~aIVtGlGRIdGrpV~V 203 (762)
T PLN03229 149 IQRVNIARHPNRPTFLDHIFNITD--KFVELHGDR------AGY-----------------DDPAIVTGIGTIDGKRYMF 203 (762)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHH--HHHHhcCcc------cCC-----------------CCCCeEEEEEEECCEEEEE
Confidence 444556788888888888888887 488887642 222 2679999999999999999
Q ss_pred EEEcCcc--------cccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCE
Q psy5220 127 AVFEFEF--------MGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPF 198 (286)
Q Consensus 127 ~a~d~~~--------~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~ 198 (286)
+++|++. .+|++++.+++|++|++++|.++++|||+|+||+|+++..+.....+...+++.+..+++.+||+
T Consensus 204 IAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ 283 (762)
T PLN03229 204 IGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPI 283 (762)
T ss_pred EEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCE
Confidence 9999964 79999999999999999999999999999999999999655444344455666788888899999
Q ss_pred EEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC------CC-CCCHHHHHHcCccceEeCc
Q psy5220 199 ISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP------DG-FQSSEFLLKKGALDMIIDR 267 (286)
Q Consensus 199 Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~------~~-~~~A~~~~~~G~vD~Vv~~ 267 (286)
|+||+|+|+|||+++++ ++|+++||++|.++++||++...++..+.. +. -.+|+.+++.|+||.||+.
T Consensus 284 ISVViGeggSGGAlA~g-~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 284 VSIVIGEGGSGGALAIG-CANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred EEEEeCCcchHHHHHhh-cCCEEEEecCCeEEecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCeeeccC
Confidence 99999999999988776 489999999999999999998877655422 11 3689999999999999973
No 22
>KOG0540|consensus
Probab=99.97 E-value=4.3e-32 Score=253.43 Aligned_cols=226 Identities=18% Similarity=0.271 Sum_probs=195.0
Q ss_pred hccccccccccccCCCCCCHHHHHHhhcCCCc-eEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEc
Q psy5220 42 DLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN-FHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120 (286)
Q Consensus 42 ~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs-f~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~ 120 (286)
++..+.+.....+.++++.+||||+.|+|+|| |.|++..... ..|. +..-++.++|||.|+|+
T Consensus 47 l~ggg~k~vd~~~srgkl~arerIdlLld~gs~Fie~d~fa~h---------~m~~-------~e~~ps~sIvtg~g~i~ 110 (536)
T KOG0540|consen 47 LLGGGEKAVDAHHSRGKLLARERIDLLLDPGSPFIELDQFAGH---------EMYG-------KEKVPSGSIVTGRGRIN 110 (536)
T ss_pred HccCChhhhhhhhhhcccchhhhhhhccCCCCcceehhhhhhh---------hhcc-------ccCCCCCceEecccccc
Confidence 44455666666677899999999999999999 9999986543 1231 22347999999999999
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHH---HHHHHHHHHHHhcCCCC
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ---MAKTTAILTKLSKKKIP 197 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~---~~~~~~a~~~l~~~~vP 197 (286)
|+.|.+++|||+++||++.+.++.|.+|+++.|.+.++|.|+|+||||++++++..++.. .++++..-+.+++.++|
T Consensus 111 gr~~~vianDfTv~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~~~~es~~d~~~~~~If~n~n~mss~~ip 190 (536)
T KOG0540|consen 111 GRKCFVIANDFTVKGGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLPRQAESFADSYHFGRIFYNQNVMSSGNIP 190 (536)
T ss_pred ceEEEEEccCchhcccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCcchhhhcCChhhhheeeeecceeccCCCC
Confidence 999999999999999999999999999999999999999999999999999998766543 68888766778889999
Q ss_pred EEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC-CCCCCHHHHHH-cCccceEeCch-hHHHHH
Q psy5220 198 FISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP-DGFQSSEFLLK-KGALDMIIDRR-KLRFKI 274 (286)
Q Consensus 198 ~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~-~~~~~A~~~~~-~G~vD~Vv~~~-e~~~~l 274 (286)
+|++|+|+|++||++++||....++...++.++++||.+|+++++|+++ +++++|..|+. +|+.|.-+..+ +..--+
T Consensus 191 qis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVka~tnEevsqedlgga~~hc~~sGv~~~~~~~dv~al~~~ 270 (536)
T KOG0540|consen 191 QISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVKAATNEEVSQEDLGGADLHCTTSGVADKAAKNDVHALCLL 270 (536)
T ss_pred ceeEEEecccCCceecccccceeEEecCcceEEecCCchhhhhccceeehhhcCCcceeeeeccchhhhhhccHHHHHHH
Confidence 9999999999999999998655666678899999999999999999988 88999999984 79999998887 777777
Q ss_pred HHHHHHHhc
Q psy5220 275 ANLLALLQK 283 (286)
Q Consensus 275 ~~~L~~l~~ 283 (286)
+..++.|+.
T Consensus 271 r~~~~~l~~ 279 (536)
T KOG0540|consen 271 RLKVSNLPL 279 (536)
T ss_pred HHHHccCCc
Confidence 888777764
No 23
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.97 E-value=8.6e-29 Score=220.58 Aligned_cols=188 Identities=18% Similarity=0.170 Sum_probs=155.3
Q ss_pred HHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEEEEEEcCcccccCCCh
Q psy5220 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGS 140 (286)
Q Consensus 61 ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~ 140 (286)
.++.|+.|+|+++|.|.+ .++|||+|+|+|++|+|+++++.+ .+|.
T Consensus 2 ~~~~l~~l~d~~~~~e~~-------------------------------~~vv~G~arl~G~~V~vIa~~~~~---~~g~ 47 (238)
T TIGR03134 2 GRDWLAALFPNGHEVAGD-------------------------------PGVLVGSAELAGGKVTVIGVVPDA---EVGL 47 (238)
T ss_pred HHHHHHHHcCCCcEEecC-------------------------------CcEEEEEEEECCEEEEEEEECCCC---cCCh
Confidence 578999999998888763 289999999999999999999865 8899
Q ss_pred HHHHHHHHHHHHH-H-hCCCcEEEEEeCCCcch---hhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcc
Q psy5220 141 VVGERFIQGAQIS-L-EQKIPFVCITATGGARM---QEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFA 215 (286)
Q Consensus 141 ~~~~K~~r~~~~A-~-~~~iPlV~l~dsgGa~i---~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a 215 (286)
..+.|.++++..| + ++++|||+|+|++|+++ +|...-...+++++.++..++..++|+|+||+|.++|||+++++
T Consensus 48 ~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg 127 (238)
T TIGR03134 48 DEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHG 127 (238)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHc
Confidence 9999999999996 4 59999999999999988 33222224467777888888888999999999999999998888
Q ss_pred ccccEEEEcCCcEEEeeChhhhhhhhhccCC------C----CCCCHHHHHHcCccceEeCchh---HHHHHHHHHHHHh
Q psy5220 216 FMGDIVIAEPGALIGFAGPRVIKNTVKEKLP------D----GFQSSEFLLKKGALDMIIDRRK---LRFKIANLLALLQ 282 (286)
Q Consensus 216 ~~~d~via~~~A~i~~~gp~vi~~~~g~~l~------~----~~~~A~~~~~~G~vD~Vv~~~e---~~~~l~~~L~~l~ 282 (286)
+.+|.++|||+|++++++|+....++..+.. + -..+++.+++.|.||.|+++.+ +.+.|.+.++.+.
T Consensus 128 ~~ad~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~~~~~~~~~ 207 (238)
T TIGR03134 128 LQADRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVADADAPAAQLAAVLAALA 207 (238)
T ss_pred cCcCeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCCcccHHHHHHHHHHhhh
Confidence 7799999999999999999998777654422 1 1246677889999999999753 4566666666554
No 24
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.95 E-value=9.3e-28 Score=214.51 Aligned_cols=206 Identities=16% Similarity=0.126 Sum_probs=176.2
Q ss_pred cccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEE
Q psy5220 34 CKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALI 113 (286)
Q Consensus 34 c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv 113 (286)
-.+.+|. +|.. ++..+-++|+.|++..++|+.|||+ |.|+..+ ..|.| +.++|
T Consensus 46 ~~~~iy~-~L~~-wq~~q~ARhp~RP~tldyi~~i~~d--f~eL~GD------R~f~d-----------------D~Aiv 98 (317)
T COG0825 46 LTKKIYS-NLTP-WQRVQLARHPDRPYTLDYIELLFTD--FVELHGD------RAFAD-----------------DPAIV 98 (317)
T ss_pred Hhhhhhc-cCCH-HHHHHHhhCCCCCcHHHHHHHHHhH--HHHhcCc------cccCc-----------------Chhhe
Confidence 3446666 5555 5666779999999999999999995 9999885 35654 88999
Q ss_pred EEEEEEcCeeEEEEEEcCcc--------cccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHH
Q psy5220 114 VIKGSIMNLPLVVAVFEFEF--------MGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTT 185 (286)
Q Consensus 114 tG~g~i~G~~v~v~a~d~~~--------~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~ 185 (286)
.|+|+++|+||+|+.++... .-|+..+++.+|..|++++|++|++|||+|+||+|+.+.-+.....|...+.
T Consensus 99 gglar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA 178 (317)
T COG0825 99 GGLARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIA 178 (317)
T ss_pred eeeeeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHH
Confidence 99999999999999999876 5688889999999999999999999999999999999844444455667888
Q ss_pred HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC------C-CCCCHHHHHHc
Q psy5220 186 AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP------D-GFQSSEFLLKK 258 (286)
Q Consensus 186 ~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~------~-~~~~A~~~~~~ 258 (286)
+++..|+...||+||+|+|...+||+.+++ .+|.|+|.+++.+++.+|+...+++-++-+ + --.+|..+.+.
T Consensus 179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~-vad~V~mle~s~ySVisPEG~AsILWkD~~ka~eAAe~mkita~dLk~l 257 (317)
T COG0825 179 RNLREMARLKVPIISIVIGEGGSGGALAIG-VADRVLMLENSTYSVISPEGCASILWKDASKAKEAAEAMKITAHDLKEL 257 (317)
T ss_pred HHHHHHhCCCCCEEEEEecCCCchhhHHhh-HHHHHHHHHhceeeecChhhhhhhhhcChhhhHHHHHHcCCCHHHHHhC
Confidence 899999999999999999999999988777 489999999999999999998887765532 1 13689999999
Q ss_pred CccceEeCc
Q psy5220 259 GALDMIIDR 267 (286)
Q Consensus 259 G~vD~Vv~~ 267 (286)
|+||.||+.
T Consensus 258 giID~II~E 266 (317)
T COG0825 258 GIIDGIIPE 266 (317)
T ss_pred CCcceeccC
Confidence 999999976
No 25
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.56 E-value=1.7e-13 Score=124.09 Aligned_cols=159 Identities=11% Similarity=0.112 Sum_probs=120.4
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-----Ccchhhch----HhHHH-HHHHHHHHHHHhc
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-----GARMQEGL----LSLMQ-MAKTTAILTKLSK 193 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-----Ga~i~Eg~----~~l~~-~~~~~~a~~~l~~ 193 (286)
|+++..|..-..++++....+.+.++++.+. ..+.+|+|...| |+++.+-. ..... .......+..+..
T Consensus 12 v~~itlnrp~~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (255)
T PRK08150 12 VATIGLNRPAKRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQY 90 (255)
T ss_pred EEEEEEcCCccccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 6666666555679999999999999999887 889999998866 66775411 00111 1122234556777
Q ss_pred CCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHHH
Q psy5220 194 KKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFLL 256 (286)
Q Consensus 194 ~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~~ 256 (286)
.++|+|++|.|+|+|||. .++++||++||.++++|++..... +.+.+|.. ++.+..+|+.+.
T Consensus 91 ~~kPvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~ 169 (255)
T PRK08150 91 GRVPVIAALHGAVVGGGL-ELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGE 169 (255)
T ss_pred CCCCEEEEECCEEEcHHH-HHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHH
Confidence 899999999999999995 588899999999999998863321 33334432 456778999999
Q ss_pred HcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 257 KKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 257 ~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.|+||.|++++++.+...++++.+...
T Consensus 170 ~~Glv~~vv~~~~l~~~a~~~a~~la~~ 197 (255)
T PRK08150 170 RLGLAQYLVPAGEALDKAMELARRIAQN 197 (255)
T ss_pred HcCCccEeeCchHHHHHHHHHHHHHHhC
Confidence 9999999999999998888888877654
No 26
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.53 E-value=1.4e-13 Score=121.56 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=131.7
Q ss_pred CCCcEEEEEEEE-cCeeEEEEEEcCcccccCCChHHHHHHHHHHHHH--HhCCCcEEEEEeCCCcch--hhchHhHHH-H
Q psy5220 108 ETDALIVIKGSI-MNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQIS--LEQKIPFVCITATGGARM--QEGLLSLMQ-M 181 (286)
Q Consensus 108 ~~~~vvtG~g~i-~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A--~~~~iPlV~l~dsgGa~i--~Eg~~~l~~-~ 181 (286)
....++.|.+.. +++.+.|+...- .|.+|...+.++++.+... ...+.|||.++|++|.++ .|..+++++ +
T Consensus 15 ~~~~v~~g~~~~~~~~~iaVvg~~~---~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~al 91 (234)
T PF06833_consen 15 ASVQVLDGEAGGEDGRFIAVVGDAN---HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQAL 91 (234)
T ss_pred cccceEEeeccccCCcEEEEEecCC---CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHH
Confidence 366789999988 889999988765 7999999999999888865 477799999999999887 555666554 5
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC--CC-------C-CC
Q psy5220 182 AKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP--DG-------F-QS 251 (286)
Q Consensus 182 ~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~--~~-------~-~~ 251 (286)
+....+++..+.++.|+|++|.|.+.+|++.+.++++|.++|.|++.+-+|+.+.+.++|...+. ++ | .+
T Consensus 92 Ahla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~ve~Le~la~s~PvfA~g 171 (234)
T PF06833_consen 92 AHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIHVMGKPSAARVTKRPVEELEELAKSVPVFAPG 171 (234)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCeeecCChHHhHHHhhcCHHHHHHHhhcCCCcCCC
Confidence 77777788888899999999999999999999999999999999999999999999888876532 11 1 46
Q ss_pred HHHHHHcCccceEeC
Q psy5220 252 SEFLLKKGALDMIID 266 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~ 266 (286)
.+.+.+.|.++.+++
T Consensus 172 i~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 172 IENYAKLGALDELWD 186 (234)
T ss_pred HHHHHHhccHHHHhc
Confidence 788889999999998
No 27
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.53 E-value=4e-13 Score=121.65 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=120.1
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhc----hHhHHHH-HHHHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEG----LLSLMQM-AKTTAILTKL 191 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg----~~~l~~~-~~~~~a~~~l 191 (286)
|+++..|..-..++++....+.+.++++.+. +..+.+|+|+.+| |+++.+- ....... ......+..+
T Consensus 17 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 96 (256)
T PRK06143 17 VATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAV 96 (256)
T ss_pred EEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHH
Confidence 6666666555779999999999999999875 6778999998865 4566441 0111111 1112234556
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
.+.++|+|++|.|.|+|||. .++++||++||.++++|+++..++ +++.+|.. ++.+..+|+.+
T Consensus 97 ~~~~kPvIAav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA 175 (256)
T PRK06143 97 RHFPVPVIARIPGWCLGGGL-ELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQA 175 (256)
T ss_pred HhCCCCEEEEECCEEeehhH-HHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHH
Confidence 67899999999999999996 578899999999999988763321 33444432 45777899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
++.|+||.|++++++.+.+.++++.+...
T Consensus 176 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 204 (256)
T PRK06143 176 LAWGLVDRVVPLAELDAAVERLAASLAGC 204 (256)
T ss_pred HHCCCcCeecCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999888764
No 28
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.53 E-value=4.2e-13 Score=122.16 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=120.2
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-----HhHHH-HHHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-----LSLMQ-MAKTTAILTK 190 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-----~~l~~-~~~~~~a~~~ 190 (286)
.|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|...| |+++.+-. ..... +......+.+
T Consensus 20 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (266)
T PRK08139 20 GVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQA 99 (266)
T ss_pred CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 36666777666679999999999999999875 5678999998766 56775411 01111 1112223455
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCCHHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~A~~ 254 (286)
+...++|+|++|.|+|+|||. .++++||++|+.++++|++....+ +.+.+|.. ++.+..+|++
T Consensus 100 l~~~~kPvIAav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~a~e 178 (266)
T PRK08139 100 IVALPQPVIARVHGIATAAGC-QLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFIDAAT 178 (266)
T ss_pred HHhCCCCEEEEECceeeHHHH-HHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccCHHH
Confidence 667899999999999999996 578899999999999998864322 33334432 4566789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+++.|+||.|++++++.+.+.++++.+...
T Consensus 179 A~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 208 (266)
T PRK08139 179 AREWGLVNRVVPADALDAAVARLAAVIAAK 208 (266)
T ss_pred HHHcCCccEeeChhHHHHHHHHHHHHHHhC
Confidence 999999999999989999998888887654
No 29
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.53 E-value=5.2e-13 Score=120.84 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=117.5
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-----CcchhhchH------hH-HHHHHHH-HHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-----GARMQEGLL------SL-MQMAKTT-AILTK 190 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-----Ga~i~Eg~~------~l-~~~~~~~-~a~~~ 190 (286)
|+++..|..-..++++......+.++++.+.+..+.+|+|..+| |+++++-.. .. ......+ ..+..
T Consensus 9 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (256)
T TIGR02280 9 VARLTLNRPDKLNSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRR 88 (256)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 45555554446689999999999999999875558899998766 567755110 00 0111111 22445
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSSE 253 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A~ 253 (286)
+...++|+|++|.|+|+|||. .++++||++||.++++|++...+ .+...+|.. ++.+..+|+
T Consensus 89 l~~~~kPvIaav~G~a~GgG~-~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~ 167 (256)
T TIGR02280 89 LRALPLPVVCAVNGVAAGAGA-NLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDAR 167 (256)
T ss_pred HHhCCCCEEEEECCeeehHHH-HHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHH
Confidence 677899999999999999996 57889999999999998865222 133344433 456778999
Q ss_pred HHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 254 FLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
++.+.|+||.|++++++.+.+.++++.+...
T Consensus 168 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 198 (256)
T TIGR02280 168 TAASWGLIWQVVDDAALMDEAQALAVHLAAQ 198 (256)
T ss_pred HHHHcCCcceeeChHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998888887654
No 30
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.53 E-value=3.9e-13 Score=121.99 Aligned_cols=161 Identities=15% Similarity=0.183 Sum_probs=120.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch--------HhHHHHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL--------LSLMQMAKTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~--------~~l~~~~~~~~a~ 188 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |.++.+-. ........+...+
T Consensus 13 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T PRK05995 13 QVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADML 92 (262)
T ss_pred CEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHH
Confidence 35666666555678999999999999999875 6778999998876 56664310 0011111223345
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCCH
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~A 252 (286)
..+...++|+|++|.|+|+|||. .++++||++|+.++++|++..... +.+.+|.. ++.+..+|
T Consensus 93 ~~l~~~~kPvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a 171 (262)
T PRK05995 93 RAIYRCPKPVIARVHGDAYAGGM-GLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDA 171 (262)
T ss_pred HHHHcCCCCEEEEECCEEEhhHH-HHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCH
Confidence 56777899999999999999996 578899999999999998863321 22334432 45667899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.+.|+||.|++++++.+.+.++.+.+.+.
T Consensus 172 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (262)
T PRK05995 172 AEALRLGLVHEVVPAEALDAKVDELLAALVAN 203 (262)
T ss_pred HHHHHcCCCCeecCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999889999998888887653
No 31
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.53 E-value=4.7e-13 Score=121.19 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=121.6
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-HhH-HH-HHHHHHHHH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-LSL-MQ-MAKTTAILT 189 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-~~l-~~-~~~~~~a~~ 189 (286)
++|. |+++..|..-..++++....+.+.++++.+. +..+.+|+|...| |+++.+-. ... .. ...+...+.
T Consensus 10 ~~~~-v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK05862 10 TRGR-VGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWE 88 (257)
T ss_pred eeCC-EEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHH
Confidence 3443 6666666555679999999999999999875 6778999998866 56775411 000 11 122233455
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCH
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A 252 (286)
++...++|+|++|.|+|+|||. .++++||++++.++++|+++..+. +.+.+|.. ++.+..+|
T Consensus 89 ~l~~~~kpvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a 167 (257)
T PRK05862 89 KVARIRKPVIAAVAGYALGGGC-ELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDA 167 (257)
T ss_pred HHHhCCCCEEEEEccEEeHHHH-HHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCH
Confidence 6777899999999999999996 588899999999999988763221 33444432 45677899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.+.|+||.|++++++.+...++++.+...
T Consensus 168 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 199 (257)
T PRK05862 168 AEAERAGLVSRVVPADKLLDEALAAATTIASF 199 (257)
T ss_pred HHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhC
Confidence 99999999999999988888888888877643
No 32
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.52 E-value=6e-13 Score=120.77 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=120.6
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-----Ccchhhch-------HhHH-HHHHHH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-----GARMQEGL-------LSLM-QMAKTT 185 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-----Ga~i~Eg~-------~~l~-~~~~~~ 185 (286)
++| .|+++..|..-..++++.+..+.+.++++.+.+..+.+|+|..+| |+++++-. .... .....+
T Consensus 10 ~~~-~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T PRK08140 10 IEA-GVATLTLNRPDKLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFY 88 (262)
T ss_pred eEC-CEEEEEecCCcccCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHH
Confidence 344 466666665556699999999999999999877779999998766 66775411 0001 111111
Q ss_pred -HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCC
Q psy5220 186 -AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPD 247 (286)
Q Consensus 186 -~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~ 247 (286)
..+..+...++|+|++|.|+|+|||. .++++||++||.++++|++.... .+.+.+|.. ++.
T Consensus 89 ~~~~~~l~~~~kPvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g 167 (262)
T PRK08140 89 NPLVRRLRALPLPVIAAVNGVAAGAGA-NLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLG 167 (262)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehhHH-HHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 13456667899999999999999996 57889999999999998754222 133344432 456
Q ss_pred CCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 248 GFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 248 ~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+..+|+++.+.|+||.|++++++.+.+.++++.+...
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQ 204 (262)
T ss_pred CCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhC
Confidence 7789999999999999999989999999988887654
No 33
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.52 E-value=6e-13 Score=121.84 Aligned_cols=164 Identities=14% Similarity=0.168 Sum_probs=120.5
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch--------HhHHHHHHH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL--------LSLMQMAKT 184 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~--------~~l~~~~~~ 184 (286)
++| .|+++..|..-..++++......+..+++.+. +..+.+|+|...| |+++.+-. .....+...
T Consensus 23 ~~~-~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 101 (277)
T PRK08258 23 VDD-GVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRM 101 (277)
T ss_pred EEC-CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHH
Confidence 344 35666666544679999999999999999875 6778999998765 56665410 011112221
Q ss_pred H-HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh------------hhhhhhcc------C
Q psy5220 185 T-AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV------------IKNTVKEK------L 245 (286)
Q Consensus 185 ~-~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v------------i~~~~g~~------l 245 (286)
+ ..+..+...++|+|++|.|+|+|||. .++++||++||.++++|++...++ +.+.+|.. +
T Consensus 102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~-~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~l 180 (277)
T PRK08258 102 TGDLVKAMRACPQPIIAAVDGVCAGAGA-ILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLY 180 (277)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHH-HHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHH
Confidence 1 23455677899999999999999996 588899999999999988753221 33334432 4
Q ss_pred CCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 246 PDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 246 ~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+..+|+++.+.|+||.|++++++.+.+.++++.+...
T Consensus 181 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 219 (277)
T PRK08258 181 TGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAG 219 (277)
T ss_pred cCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhC
Confidence 567789999999999999999989999999988887654
No 34
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.52 E-value=5.9e-13 Score=120.46 Aligned_cols=160 Identities=14% Similarity=0.209 Sum_probs=119.1
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH--hHHHHHH-HHHHHHHHhcC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL--SLMQMAK-TTAILTKLSKK 194 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~--~l~~~~~-~~~a~~~l~~~ 194 (286)
|+++..|..-..++++....+.+.++++.+. +..+.+|+|...| |+++++-.. ....... ....+..+...
T Consensus 12 v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (255)
T PRK09674 12 VLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAF 91 (255)
T ss_pred EEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhC
Confidence 6666666555679999999999999999875 6778999998766 567754110 0011111 11234456678
Q ss_pred CCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHHHH
Q psy5220 195 KIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFLLK 257 (286)
Q Consensus 195 ~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~~~ 257 (286)
++|+|++|.|+|+|||. .++++||+++|.++++|+++..+. +.+.+|.. ++.+..+|+.+++
T Consensus 92 ~kPvIAav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~ 170 (255)
T PRK09674 92 NKPLIAAVNGYALGAGC-ELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQ 170 (255)
T ss_pred CCCEEEEECCEeehHHH-HHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHH
Confidence 99999999999999996 588899999999999988753221 33344533 4567789999999
Q ss_pred cCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 258 KGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 258 ~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.|+||.|++++++.+.+.++++.+...
T Consensus 171 ~Glv~~vv~~~~~~~~a~~~a~~l~~~ 197 (255)
T PRK09674 171 AGLVSEVFPPELTLERALQLASKIARH 197 (255)
T ss_pred cCCCcEecChHHHHHHHHHHHHHHHhC
Confidence 999999999998888888888887654
No 35
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.52 E-value=6.2e-13 Score=120.03 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=121.0
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH---hHHH-HHHHHHHHHHHh
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL---SLMQ-MAKTTAILTKLS 192 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~---~l~~-~~~~~~a~~~l~ 192 (286)
.|+++..|..-..++++.++.+.+.++++.+. +..+.+|+|++.| |.++++-.. .... ...+...+..+.
T Consensus 15 ~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (251)
T PRK06023 15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALA 94 (251)
T ss_pred cEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHH
Confidence 47777777666789999999999999999875 6679999998776 567754110 0000 112223345677
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A~~~ 255 (286)
..++|+|++|.|+|+|||. .++++||+++|.++|+|++.... .++..+|.. ++.+..+|+.+
T Consensus 95 ~~~kPvIAav~G~a~GgG~-~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA 173 (251)
T PRK06023 95 EAEKPIVSGVDGLAIGIGT-TIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAA 173 (251)
T ss_pred hCCCCEEEEeCCceecHHH-HHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHH
Confidence 7899999999999999996 58889999999999998776321 134444432 34667899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
++.|+||.|++++++.+.+.++.+.+...
T Consensus 174 ~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 202 (251)
T PRK06023 174 QEAGLIWKIVDEEAVEAETLKAAEELAAK 202 (251)
T ss_pred HHcCCcceeeCHHHHHHHHHHHHHHHHhC
Confidence 99999999999989888888888887654
No 36
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.52 E-value=4.9e-13 Score=120.61 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=117.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-----HhHHHH-HHHHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-----LSLMQM-AKTTAILTKL 191 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-----~~l~~~-~~~~~a~~~l 191 (286)
|+++..|..-. ++++.+....+.++++.+. +..+.+|+|...| |+++.+-. ...... ......+..+
T Consensus 12 v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (249)
T PRK07938 12 IAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAV 90 (249)
T ss_pred EEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 34444443334 9999999999999999875 6778999998766 67775411 111111 1112234566
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh--------hhhhhhcc------CCCCCCCHHHHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV--------IKNTVKEK------LPDGFQSSEFLLK 257 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v--------i~~~~g~~------l~~~~~~A~~~~~ 257 (286)
.+.++|+|++|.|+|+|||. .++++||++|+.++++|+++...+ +.+.+|.. ++.+..+|+.+++
T Consensus 91 ~~~~kPvIAav~G~a~GgG~-~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~ 169 (249)
T PRK07938 91 YECAVPVIAAVHGFCLGGGI-GLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAAELHH 169 (249)
T ss_pred HhCCCCEEEEEcCEEeehHH-HHHHhCCEEEEeCCCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHH
Confidence 77899999999999999996 578899999999999988764321 33334432 4567789999999
Q ss_pred cCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 258 KGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 258 ~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.|+||.|++++++.+.+.++.+.+...
T Consensus 170 ~Glv~~vv~~~~l~~~a~~~a~~la~~ 196 (249)
T PRK07938 170 FGSVEEVVPRDQLDEAALEVARKIAAK 196 (249)
T ss_pred CCCccEEeCHHHHHHHHHHHHHHHHhC
Confidence 999999999989999999998887654
No 37
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.51 E-value=6.4e-13 Score=120.90 Aligned_cols=161 Identities=15% Similarity=0.185 Sum_probs=120.4
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch--------HhHHHHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL--------LSLMQMAKTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~--------~~l~~~~~~~~a~ 188 (286)
.|+.+..|..-..++++......+.++++.+. +..+.+|+|...| |+++.+-. ........+...+
T Consensus 15 ~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (265)
T PRK05674 15 GFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELM 94 (265)
T ss_pred CEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHH
Confidence 47777777655679999999999999999874 6778999998866 56665310 0111112233345
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCCH
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~A 252 (286)
..+...++|+|+.|.|+|+|||. .++++||++||.++|+|++...+. +.+.+|.. ++.+..+|
T Consensus 95 ~~l~~~~kPvIaaV~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a 173 (265)
T PRK05674 95 YNLYRLKIPTLAVVQGAAFGGAL-GLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDG 173 (265)
T ss_pred HHHHcCCCCEEEEEcCEEEechh-hHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCH
Confidence 56778899999999999999996 578899999999999988752221 22334432 45677899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+++.|+||.|++++++.+.+.++++.+...
T Consensus 174 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 205 (265)
T PRK05674 174 RRARELGLLAESYPAAELEAQVEAWIANLLLN 205 (265)
T ss_pred HHHHHCCCcceecCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999989999999888887654
No 38
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.51 E-value=5.2e-13 Score=122.14 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=122.4
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch---H--h---HHHHHH-HHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL---L--S---LMQMAK-TTAI 187 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~---~--~---l~~~~~-~~~a 187 (286)
.|+++..|..-..++++..+.+.+.++++.+. +.++.+|+|...| |+++++-. . . .....+ ....
T Consensus 17 ~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (275)
T PRK09120 17 GIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGW 96 (275)
T ss_pred CEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHH
Confidence 47777777766789999999999999999875 6789999998866 56765410 0 0 111111 1123
Q ss_pred HHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCC
Q psy5220 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQ 250 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~ 250 (286)
+..+...++|+|++|.|+|+|||. .++++||++|++++|+|+++..+ .+...+|.. ++.+..
T Consensus 97 ~~~l~~~~kPvIAav~G~a~GgG~-~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~ 175 (275)
T PRK09120 97 WRRLRWYQKPTIAMVNGWCFGGGF-SPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETF 175 (275)
T ss_pred HHHHHhCCCCEEEEEcCEEechhH-HHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCcc
Confidence 456777899999999999999996 57889999999999999886322 133444432 456778
Q ss_pred CHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 251 SSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 251 ~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+|+.+.+.|+||.|++++++.+.+.++++.+...
T Consensus 176 ~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 209 (275)
T PRK09120 176 TGRKAAEMGLVNESVPLAQLRARTRELAAKLLEK 209 (275)
T ss_pred CHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888654
No 39
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.51 E-value=6e-13 Score=121.60 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=119.7
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch----HhHHHHHH--HHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL----LSLMQMAK--TTAILT 189 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~----~~l~~~~~--~~~a~~ 189 (286)
.|+++..|..-..++++..+.+.+.++++.+. +..+.+|+|..+| |+++.+-. ....+... ....+.
T Consensus 22 ~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 101 (273)
T PRK07396 22 GIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQR 101 (273)
T ss_pred CEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHH
Confidence 46666666555678999999999999999875 5678999998765 45665410 00001111 112334
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCH
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A 252 (286)
.+.+.++|+|++|.|+|+|||. .++++||++|+.++++|++..+++ +...+|.. ++.+..+|
T Consensus 102 ~l~~~~kPvIAav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A 180 (273)
T PRK07396 102 LIRTCPKPVIAMVAGYAIGGGH-VLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDA 180 (273)
T ss_pred HHHhCCCCEEEEECCEEehHHH-HHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCH
Confidence 5667899999999999999996 578899999999999999875442 33344432 45678899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+++.|+||.|++++++.+.+.++++.+...
T Consensus 181 ~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 212 (273)
T PRK07396 181 QEALDMGLVNTVVPLADLEKETVRWCREMLQN 212 (273)
T ss_pred HHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999989999999888887654
No 40
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.51 E-value=6.9e-13 Score=120.33 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=118.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch---HhHHHHHHHHHHHHHHhcC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL---LSLMQMAKTTAILTKLSKK 194 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~---~~l~~~~~~~~a~~~l~~~ 194 (286)
|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|...| |+++.+-. ............+..+...
T Consensus 14 va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (258)
T PRK06190 14 VRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAM 93 (258)
T ss_pred EEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhC
Confidence 5555555555679999999999999999885 5678999998765 66775411 0000011112234556778
Q ss_pred CCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHHHH
Q psy5220 195 KIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFLLK 257 (286)
Q Consensus 195 ~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~~~ 257 (286)
++|+|++|.|+|+|||. .++++||++||.++|+|+++..+. +.+.+|.. ++.+..+|+++.+
T Consensus 94 ~kPvIAaV~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~ 172 (258)
T PRK06190 94 RKPVIGAINGAAVTGGL-ELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALR 172 (258)
T ss_pred CCCEEEEECCEeecHHH-HHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHH
Confidence 99999999999999996 578899999999999988753322 33334432 4567789999999
Q ss_pred cCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 258 KGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 258 ~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.|+||.|++++++.+...++++.+...
T Consensus 173 ~GLv~~vv~~~~l~~~a~~~a~~la~~ 199 (258)
T PRK06190 173 AGLVTEVVPHDELLPRARRLAASIAGN 199 (258)
T ss_pred cCCCeEecCHhHHHHHHHHHHHHHHcC
Confidence 999999999888888888888877654
No 41
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.51 E-value=7.4e-13 Score=120.67 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=119.5
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch------HhHHH-HHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL------LSLMQ-MAKTTAILT 189 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~------~~l~~-~~~~~~a~~ 189 (286)
.|+++..|..-..++++......+.++++.+. +..+.+|+|..+| |.++.+-. ....+ +......+.
T Consensus 21 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (268)
T PRK07327 21 GVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVY 100 (268)
T ss_pred CEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 36666666555678999999999999999875 5678999998766 55664310 00111 111223345
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCH
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A 252 (286)
.+...++|+|++|.|+|+|||. .++++||++|+.++|+|+++..+ .++..+|.. ++.+..+|
T Consensus 101 ~l~~~~kPvIAav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a 179 (268)
T PRK07327 101 NVINCDKPIVSAIHGPAVGAGL-VAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSG 179 (268)
T ss_pred HHHcCCCCEEEEEcCeeeehhh-HHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCH
Confidence 5667899999999999999996 57889999999999998875222 133444432 45677899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+++.|+||.|++++++.+...++++.+...
T Consensus 180 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 211 (268)
T PRK07327 180 EEAERIGLVSLAVDDDELLPKALEVAERLAAG 211 (268)
T ss_pred HHHHHcCCcceecCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998888754
No 42
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.51 E-value=8.8e-13 Score=119.68 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=119.5
Q ss_pred eeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH--hHHHH-HHHHHHHHHHh
Q psy5220 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL--SLMQM-AKTTAILTKLS 192 (286)
Q Consensus 122 ~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~--~l~~~-~~~~~a~~~l~ 192 (286)
-.|+++..|..-..++++......+.++++.+. +..+.+|+|...| |+++++-.. ....+ ......+..+.
T Consensus 16 ~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~ 95 (261)
T PRK08138 16 DGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIA 95 (261)
T ss_pred CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHH
Confidence 346666666555679999999999999999875 6778999998765 567654100 00111 11222345667
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
..++|+|++|.|+|+|||. .++++||++|+.++++|++...++ +.+.+|.. ++.+..+|+.+
T Consensus 96 ~~~kPvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA 174 (261)
T PRK08138 96 QCPKPVIAAVNGYALGGGC-ELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEA 174 (261)
T ss_pred hCCCCEEEEEccEEEcHHH-HHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999995 578899999999999988753221 33444543 45677899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
++.|+||.|++++++.+...++++.+.+.
T Consensus 175 ~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 203 (261)
T PRK08138 175 LAIGLVSEVVEDEQTLPRALELAREIARM 203 (261)
T ss_pred HHCCCCcEecCchHHHHHHHHHHHHHHhC
Confidence 99999999999988888888888777653
No 43
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.51 E-value=8.8e-13 Score=119.48 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=117.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhc---h-HhHHHHHH-HHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEG---L-LSLMQMAK-TTAILTKL 191 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg---~-~~l~~~~~-~~~a~~~l 191 (286)
|+++..|..-. ++++.+....+.++++.+. +..+.+|+|..+| |+++.+- . .....+.. ....+.++
T Consensus 13 v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 91 (258)
T PRK09076 13 VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEAL 91 (258)
T ss_pred EEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHH
Confidence 55555554334 9999999999999999875 6789999998765 4566441 0 01111222 22345567
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A~~ 254 (286)
.+.++|+|++|.|+|+|||. .++++||++++.++|+|++.... .+...+|.. ++.+..+|+.
T Consensus 92 ~~~~kPvIAav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~e 170 (258)
T PRK09076 92 SAFRGVSIAAINGYAMGGGL-ECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAAT 170 (258)
T ss_pred HhCCCCEEEEECCEEecHHH-HHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH
Confidence 77899999999999999996 57889999999999999875221 144444432 4567789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+++.|+||.|++++++.+.+.++++.+...
T Consensus 171 A~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 200 (258)
T PRK09076 171 ALRIGLVEEVVEKGEAREAALALAQKVANQ 200 (258)
T ss_pred HHHCCCCceecCchhHHHHHHHHHHHHHhC
Confidence 999999999999988888888888777653
No 44
>PLN02600 enoyl-CoA hydratase
Probab=99.51 E-value=9.7e-13 Score=118.80 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=118.6
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhc----hHhHHHHHH-HHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEG----LLSLMQMAK-TTAILTKL 191 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg----~~~l~~~~~-~~~a~~~l 191 (286)
|+++..|..-..++++....+.+.++++.+. +..+.+|+|...+ |+++++- ......+.. ....+..+
T Consensus 5 v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 84 (251)
T PLN02600 5 IVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSL 84 (251)
T ss_pred EEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 5566666555678999999999999999875 6679999998753 5666541 011111111 22234566
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~ 254 (286)
...++|+|++|.|+|+|||. .++++||++||.++++|++...++ +.+.+|.. ++.+..+|+.
T Consensus 85 ~~~~kPvIAav~G~a~GgG~-~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e 163 (251)
T PLN02600 85 EALSIPTIAVVEGAALGGGL-ELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGARE 163 (251)
T ss_pred HhCCCCEEEEecCeecchhH-HHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHH
Confidence 77899999999999999996 588899999999999998853221 33344432 4567789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.|+||.|++++++.+...++++.+...
T Consensus 164 A~~~Glv~~vv~~~~~~~~a~~~a~~la~~ 193 (251)
T PLN02600 164 AASMGLVNYCVPAGEAYEKALELAQEINQK 193 (251)
T ss_pred HHHcCCCcEeeChhHHHHHHHHHHHHHHhC
Confidence 999999999999999888888888877654
No 45
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.50 E-value=6.6e-13 Score=120.59 Aligned_cols=160 Identities=15% Similarity=0.200 Sum_probs=116.6
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-------CcchhhchH---hHHHH-HHHHHHHHHHh
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-------GARMQEGLL---SLMQM-AKTTAILTKLS 192 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-------Ga~i~Eg~~---~l~~~-~~~~~a~~~l~ 192 (286)
|+++..|..-..++++......+..+++.+.+..+.+|+|...+ |.++.+-.. ....+ ..+...+..+.
T Consensus 14 v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~ 93 (261)
T PRK11423 14 IATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQ 93 (261)
T ss_pred EEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 55555555446799999999999999999876668899998642 456654100 00111 11222345667
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
..++|+|++|.|+|+|||. .++++||++||.++++|+++..++ +.+.+|.. ++.+..+|+.+
T Consensus 94 ~~~kPvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA 172 (261)
T PRK11423 94 KFPKPVIAMVEGSVWGGAF-ELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRA 172 (261)
T ss_pred hCCCCEEEEEecEEechHH-HHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHH
Confidence 7899999999999999995 578899999999999988753321 22333432 45677899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.|+||.|++++++.+.+.++++.+...
T Consensus 173 ~~~GLv~~vv~~~~l~~~a~~~a~~l~~~ 201 (261)
T PRK11423 173 LAVGILNHVVEVEELEDFTLQMAHHISEK 201 (261)
T ss_pred HHcCCcCcccCHHHHHHHHHHHHHHHHhc
Confidence 99999999999889988888888877653
No 46
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.50 E-value=8e-13 Score=120.18 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=119.7
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHHhC-C-CcEEEEEeCC-----Ccchhhch----------HhHHHHHH-H
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQ-K-IPFVCITATG-----GARMQEGL----------LSLMQMAK-T 184 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~-~-iPlV~l~dsg-----Ga~i~Eg~----------~~l~~~~~-~ 184 (286)
.|+++..|..-..++++.+..+.+.++++.+.+. . +.+|+|...| |+++.+-. ........ +
T Consensus 13 ~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (266)
T PRK05981 13 GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAY 92 (266)
T ss_pred CEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHH
Confidence 3666667665567999999999999999988653 3 8999998765 56765411 00011111 2
Q ss_pred HHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCC
Q psy5220 185 TAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPD 247 (286)
Q Consensus 185 ~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~ 247 (286)
...+.++...++|+|++|.|+|+|||. .++++||++||.++++|++..+++ +.+.+|.. ++.
T Consensus 93 ~~~~~~l~~~~kpvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g 171 (266)
T PRK05981 93 HPFLRRLRNLPCPIVTAVNGPAAGVGM-SFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLG 171 (266)
T ss_pred HHHHHHHHhCCCCEEEEECCEeehHHH-HHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhC
Confidence 224456777899999999999999996 578899999999999987654332 33334432 456
Q ss_pred CCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 248 GFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 248 ~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+..+|+.+.+.|+||.|++++++.+.+.++++.+.+.
T Consensus 172 ~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~ 208 (266)
T PRK05981 172 EKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG 208 (266)
T ss_pred CCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC
Confidence 7789999999999999999988888888888877654
No 47
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.50 E-value=1.1e-12 Score=119.16 Aligned_cols=161 Identities=14% Similarity=0.215 Sum_probs=118.9
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-------HhHHH-HHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-------LSLMQ-MAKTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-------~~l~~-~~~~~~a~ 188 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++.+-. ..... ...+...+
T Consensus 14 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T PRK07468 14 GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMML 93 (262)
T ss_pred cEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHH
Confidence 46777777655679999999999999999875 6678999998766 56775410 00011 12222234
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCCH
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~A 252 (286)
..+...++|+|++|.|+|+|||. .++++||++|++++|+|++..... ....+|.. ++.+..+|
T Consensus 94 ~~l~~~~kPvIaav~G~a~GgG~-~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~vG~~~a~~lll~g~~~~a 172 (262)
T PRK07468 94 KALNDLPKPLIGRIQGQAFGGGV-GLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVARMGEANARRVFMSARLFDA 172 (262)
T ss_pred HHHHcCCCCEEEEECCEEEhHHH-HHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhhccHHHHHHHHHhCCccCH
Confidence 56777899999999999999996 578899999999999988763221 11123332 44677899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.+.|+||.|++++++.+.+.++++.+.+.
T Consensus 173 ~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~ 204 (262)
T PRK07468 173 EEAVRLGLLSRVVPAERLDAAVEAEVTPYLSC 204 (262)
T ss_pred HHHHHcCCcceecCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999888888888887777653
No 48
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.50 E-value=1.2e-12 Score=116.12 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=116.7
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch----HhHHHHHH-HHHHHHHHh
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL----LSLMQMAK-TTAILTKLS 192 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~----~~l~~~~~-~~~a~~~l~ 192 (286)
|+++..|..-. ++++.+....+.++++.+. +.++.+|+|+..| |+++.+-. .......+ ....+.++.
T Consensus 18 i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (222)
T PRK05869 18 LATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVA 96 (222)
T ss_pred EEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence 44444443334 9999999999999999875 6889999998765 66765410 00000111 122445667
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
..++|+|+.|.|+|+|||. .++++||+++|.++++|++...++ +.+.+|.. ++.+..+|+.+
T Consensus 97 ~~~kPvIAav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA 175 (222)
T PRK05869 97 AIPKPTVAAITGYALGAGL-TLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEA 175 (222)
T ss_pred hCCCCEEEEEcCEeecHHH-HHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHH
Confidence 7899999999999999996 578899999999999988853221 33344432 44677899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.|+||.|++++++.+.+.++++.+.+.
T Consensus 176 ~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 176 LALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999888764
No 49
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.50 E-value=1.1e-12 Score=118.92 Aligned_cols=159 Identities=14% Similarity=0.210 Sum_probs=117.6
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhc--h----HhHHHHHH-HHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEG--L----LSLMQMAK-TTAILTK 190 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg--~----~~l~~~~~-~~~a~~~ 190 (286)
|+++..|..- .++++....+.+.++++.+. +..+.+|+|...| |+++.+- . ....+..+ ....+.+
T Consensus 14 v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (257)
T PRK06495 14 VAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHA 92 (257)
T ss_pred EEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHH
Confidence 5555554433 49999999999999999875 6678999998865 5566541 0 01111111 2223456
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh--------hhhhhhhcc------CCCCCCCHHHHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR--------VIKNTVKEK------LPDGFQSSEFLL 256 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~--------vi~~~~g~~------l~~~~~~A~~~~ 256 (286)
+...++|+|++|.|.|+|||. .++++||++||.++++|++.... .+.+.+|.. ++.+..+|+.++
T Consensus 93 l~~~~kPvIAav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~ 171 (257)
T PRK06495 93 IRECAKPVIAAVNGPALGAGL-GLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPAAELY 171 (257)
T ss_pred HHhCCCCEEEEECCeeehhHH-HHHHhCCEEEecCCCEeeChhhccCccccHHHHHHHhCHHHHHHHHHcCCeeCHHHHH
Confidence 777899999999999999996 58889999999999988776332 133444432 456778999999
Q ss_pred HcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 257 KKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 257 ~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.|+||.|++++++.+.+.++++.+...
T Consensus 172 ~~GLv~~vv~~~~~~~~a~~~a~~l~~~ 199 (257)
T PRK06495 172 RRGVIEACLPPEELMPEAMEIAREIASK 199 (257)
T ss_pred HcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 9999999999989999999988888754
No 50
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.50 E-value=6.5e-13 Score=120.27 Aligned_cols=161 Identities=14% Similarity=0.197 Sum_probs=119.6
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch---HhHHHHHH-HHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL---LSLMQMAK-TTAILTKL 191 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~---~~l~~~~~-~~~a~~~l 191 (286)
.|+++..|..-..++++..+.+.+.++++.+. +..+.+|+|..+| |+++.+-. ........ +...+..+
T Consensus 11 ~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l 90 (256)
T TIGR03210 11 GIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAI 90 (256)
T ss_pred CEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHH
Confidence 36666666555779999999999999999875 7778999998766 45665411 00000111 11234456
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~ 254 (286)
...++|+|++|.|+|+|||. .++++||++|+.++++|++..+++ +.+.+|.. ++.+..+|++
T Consensus 91 ~~~~kPvIaav~G~a~GgG~-~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~e 169 (256)
T TIGR03210 91 RDVPKPVIARVQGYAIGGGN-VLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQE 169 (256)
T ss_pred HhCCCCEEEEECCEEehhhH-HHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH
Confidence 67899999999999999996 578899999999999998864322 33344433 3467789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+++.|+||.|++++++.+.+.++++.+...
T Consensus 170 A~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 199 (256)
T TIGR03210 170 ALAMGLVNAVVPHDQLDAEVQKWCDEIVEK 199 (256)
T ss_pred HHHcCCceeeeCHHHHHHHHHHHHHHHHhC
Confidence 999999999999989999999988887754
No 51
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.50 E-value=1.1e-12 Score=119.07 Aligned_cols=164 Identities=18% Similarity=0.265 Sum_probs=121.2
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch-----HhHHHHH-HHH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL-----LSLMQMA-KTT 185 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~-----~~l~~~~-~~~ 185 (286)
++| .|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++.+-. .....+. .+.
T Consensus 14 ~~~-~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 92 (262)
T PRK06144 14 VRG-GIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRID 92 (262)
T ss_pred eeC-CEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence 445 46666676666779999999999999999876 5678999998765 45665410 0001111 122
Q ss_pred HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-h-----------hhhhhhcc------CCC
Q psy5220 186 AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-V-----------IKNTVKEK------LPD 247 (286)
Q Consensus 186 ~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-v-----------i~~~~g~~------l~~ 247 (286)
..+..+...++|+|++|.|+|+|||. .++++||++||.++++|++.... + +.+.+|.. ++.
T Consensus 93 ~~~~~l~~~~kPvIaav~G~a~GgG~-~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g 171 (262)
T PRK06144 93 RVLGALEQLRVPTIAAIAGACVGGGA-AIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTA 171 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeeehHH-HHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 23445667899999999999999996 57889999999999999886442 1 23334432 456
Q ss_pred CCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 248 GFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 248 ~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+..+|+.+.+.|+||.|++++++.+.+.++.+.+...
T Consensus 172 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~ 208 (262)
T PRK06144 172 RLLEAEEALAAGLVNEVVEDAALDARADALAELLAAH 208 (262)
T ss_pred CCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC
Confidence 7789999999999999999999998888888877654
No 52
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.50 E-value=1.1e-12 Score=120.06 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=119.8
Q ss_pred eeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH---------------hHHH
Q psy5220 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL---------------SLMQ 180 (286)
Q Consensus 122 ~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~---------------~l~~ 180 (286)
-.|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|.++| |+++.+-.. .+..
T Consensus 16 ~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 95 (275)
T PLN02664 16 SSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRR 95 (275)
T ss_pred CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHH
Confidence 356777777666779999999999999999875 6779999998866 567654100 0111
Q ss_pred HHHH-HHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc----
Q psy5220 181 MAKT-TAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK---- 244 (286)
Q Consensus 181 ~~~~-~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~---- 244 (286)
+... ...+..+.+.++|+|++|.|.|+|||. .++++||++||.++|+|+++..++ +...+|..
T Consensus 96 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~-~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~ 174 (275)
T PLN02664 96 KIKFLQDAITAIEQCRKPVIAAIHGACIGGGV-DIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAME 174 (275)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCccccchH-HHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHH
Confidence 1111 123455677899999999999999996 588899999999999998863321 33344432
Q ss_pred --CCCCCCCHHHHHHcCccceEeCc-hhHHHHHHHHHHHHhcC
Q psy5220 245 --LPDGFQSSEFLLKKGALDMIIDR-RKLRFKIANLLALLQKK 284 (286)
Q Consensus 245 --l~~~~~~A~~~~~~G~vD~Vv~~-~e~~~~l~~~L~~l~~~ 284 (286)
++.+..+|+.+++.|+||.|+++ +++.+.+.++.+.+...
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~ 217 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAK 217 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhC
Confidence 45677899999999999999996 78888888887777653
No 53
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.50 E-value=1.1e-12 Score=119.68 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=118.4
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch---------------HhHHH-H
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL---------------LSLMQ-M 181 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~---------------~~l~~-~ 181 (286)
|+.+..|..-..++++....+.+.++++.+. +..+.+|+|...| |+++.+-. ..+.. .
T Consensus 16 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (272)
T PRK06142 16 VAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREI 95 (272)
T ss_pred EEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHH
Confidence 5666666555679999999999999999875 6679999999876 56664410 00111 1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------
Q psy5220 182 AKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------ 244 (286)
Q Consensus 182 ~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------ 244 (286)
......+..+...++|+|++|.|+|+|||. .++++||++||.++|+|+++..++ +...+|..
T Consensus 96 ~~~~~~~~~i~~~~kpvIAav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ 174 (272)
T PRK06142 96 LRLQAAINAVADCRKPVIAAVQGWCIGGGV-DLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELA 174 (272)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccccchH-HHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHH
Confidence 112223445667899999999999999996 578899999999999998763321 33444432
Q ss_pred CCCCCCCHHHHHHcCccceEeCc-hhHHHHHHHHHHHHhcC
Q psy5220 245 LPDGFQSSEFLLKKGALDMIIDR-RKLRFKIANLLALLQKK 284 (286)
Q Consensus 245 l~~~~~~A~~~~~~G~vD~Vv~~-~e~~~~l~~~L~~l~~~ 284 (286)
++.+..+|+.+++.|+||.|+++ +++.+.+.++++.+...
T Consensus 175 l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~ 215 (272)
T PRK06142 175 LTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK 215 (272)
T ss_pred HhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC
Confidence 45677899999999999999996 68888888888877653
No 54
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.49 E-value=6.9e-13 Score=120.33 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=118.2
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-----Ccchhhch-----HhHHHH-HHHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-----GARMQEGL-----LSLMQM-AKTTAILTKL 191 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-----Ga~i~Eg~-----~~l~~~-~~~~~a~~~l 191 (286)
.|+++..|..-..++++....+.+.++++.+.+..+.+|+|...| |+++.+-. ....+. ..+...+.++
T Consensus 15 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (260)
T PRK07659 15 RVATIMLNRPEALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTL 94 (260)
T ss_pred CEEEEEeCCcccccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHH
Confidence 356666665557799999999999999998877789999998766 56775411 011111 1222234556
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~ 254 (286)
...++|+|++|.|+|+|||. .++++||++++.++++|++..... +.+.+|.. ++.+..+|+.
T Consensus 95 ~~~~~pvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~e 173 (260)
T PRK07659 95 YTMPKLTISAIHGPAAGLGL-SIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATE 173 (260)
T ss_pred HhCCCCEEEEecCceecHHH-HHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHH
Confidence 67899999999999999996 578899999999999988763321 33334433 3467789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.|+||.|+ ++++.+.+.++++.+...
T Consensus 174 A~~~Glv~~vv-~~~~~~~a~~~a~~l~~~ 202 (260)
T PRK07659 174 ALDLGLIDEVI-GGDFQTAAKQKISEWLQK 202 (260)
T ss_pred HHHcCChHHHh-hhHHHHHHHHHHHHHHhC
Confidence 99999999999 778888888888877654
No 55
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.49 E-value=1.3e-12 Score=118.22 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=119.4
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch--------HhHHHHHHH-HHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL--------LSLMQMAKT-TAI 187 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~--------~~l~~~~~~-~~a 187 (286)
.|+.+..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++++-. ..+..+.+. ...
T Consensus 11 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (255)
T PRK07260 11 DLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEI 90 (255)
T ss_pred CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHH
Confidence 36666666555679999999999999999875 6778899998776 55664310 111111122 223
Q ss_pred HHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeC------hh-----hhhhhhhcc------CCCCCC
Q psy5220 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAG------PR-----VIKNTVKEK------LPDGFQ 250 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~g------p~-----vi~~~~g~~------l~~~~~ 250 (286)
+.++...++|+|++|.|.|+|||. .++++||++||++++.|+++. |. .+.+.+|.. ++.+..
T Consensus 91 ~~~l~~~~kPvIaav~G~a~GgG~-~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~ 169 (255)
T PRK07260 91 SFAIKQLPKPVIMCVDGAVAGAAA-NMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEAL 169 (255)
T ss_pred HHHHHcCCCCEEEEecCeeehhhH-HHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCcc
Confidence 456677899999999999999995 588899999999999998752 11 133334432 456778
Q ss_pred CHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 251 SSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 251 ~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+|+.+.+.|+||.|++++++.+.+.++++.+.+.
T Consensus 170 sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (255)
T PRK07260 170 TAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRG 203 (255)
T ss_pred CHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcC
Confidence 9999999999999999989999999998888754
No 56
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.49 E-value=1.1e-12 Score=118.98 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=117.6
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch-------H-hHHHHHHH-HHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL-------L-SLMQMAKT-TAI 187 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~-------~-~l~~~~~~-~~a 187 (286)
|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|..+| |+++.+-. . ....+.+. ...
T Consensus 13 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (260)
T PRK05980 13 IALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAM 92 (260)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHH
Confidence 5555566554679999999999999999875 6779999998866 45664410 0 01111111 123
Q ss_pred HHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCC
Q psy5220 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQ 250 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~ 250 (286)
+..+...++|+|++|.|.|+|||. .++++||++|+.++++|++....+ +.+.+|.. ++.+..
T Consensus 93 ~~~l~~~~kPvIaav~G~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~ 171 (260)
T PRK05980 93 TARLEAFPKPVIAAVNGLAFGGGC-EITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAF 171 (260)
T ss_pred HHHHHhCCCCEEEEEcCEEEhhhh-HHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCcc
Confidence 445667899999999999999996 588899999999999988753221 33344432 456778
Q ss_pred CHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 251 SSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 251 ~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+|+.+.+.|+||.|++++++.+.+.++++.+.+.
T Consensus 172 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 205 (260)
T PRK05980 172 SAERALEIGLVNAVVPHEELLPAARALARRIIRH 205 (260)
T ss_pred CHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988888888888777653
No 57
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.49 E-value=1.2e-12 Score=119.84 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=118.6
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch----------Hh-HHH-HHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL----------LS-LMQ-MAKT 184 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~----------~~-l~~-~~~~ 184 (286)
.|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|...| |+++.+-. .. ..+ ....
T Consensus 19 ~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (276)
T PRK05864 19 EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELL 98 (276)
T ss_pred CEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHH
Confidence 46666676655669999999999999999875 5679999998765 56765410 00 001 1112
Q ss_pred HHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeC-------hh-----hhhhhhhcc------CC
Q psy5220 185 TAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAG-------PR-----VIKNTVKEK------LP 246 (286)
Q Consensus 185 ~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~g-------p~-----vi~~~~g~~------l~ 246 (286)
...+..+...++|+|++|.|+|+|||. .++++||++||.++++|++.. |. .+++.+|.. ++
T Consensus 99 ~~~~~~l~~~~kPvIaav~G~a~GgG~-~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~ 177 (276)
T PRK05864 99 DDVILALRRLHQPVIAAVNGPAIGGGL-CLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLT 177 (276)
T ss_pred HHHHHHHHhCCCCEEEEECCEeehhHH-HHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHc
Confidence 223456667899999999999999996 588899999999999876531 11 144445532 45
Q ss_pred CCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 247 DGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 247 ~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+..+|+.+++.|+||.|++++++.+.+.++++.+...
T Consensus 178 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 215 (276)
T PRK05864 178 GRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGF 215 (276)
T ss_pred CCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhC
Confidence 66789999999999999999999988888888887654
No 58
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.49 E-value=9.5e-13 Score=119.33 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=117.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------CcchhhchH--hHHHHHHHHHHHHHHhc
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGLL--SLMQMAKTTAILTKLSK 193 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~~--~l~~~~~~~~a~~~l~~ 193 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++++-.. ........+..+..+.+
T Consensus 13 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (259)
T PRK06494 13 HVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFD 92 (259)
T ss_pred CEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhc
Confidence 35666666554568999999999999999874 6778999998866 456654110 00000111122333346
Q ss_pred CCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHHH
Q psy5220 194 KKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFLL 256 (286)
Q Consensus 194 ~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~~ 256 (286)
.++|+|++|.|.|+|||. .++++||++|+.++|+|++..... +.+.+|.. ++.+..+|+++.
T Consensus 93 ~~kPvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~ 171 (259)
T PRK06494 93 LDKPIIAAVNGVAMGGGF-ELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGL 171 (259)
T ss_pred CCCCEEEEECCEEecHHH-HHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHH
Confidence 799999999999999996 578899999999999998863221 33344432 456778999999
Q ss_pred HcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 257 KKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 257 ~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.|+||.|++++++.+.+.++++.+...
T Consensus 172 ~~GLv~~vv~~~~l~~~a~~~a~~la~~ 199 (259)
T PRK06494 172 ELGFVNEVVPAGELLAAAERWADDILAC 199 (259)
T ss_pred HcCCCcEecCHhHHHHHHHHHHHHHHhc
Confidence 9999999999989999998888887654
No 59
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.49 E-value=1e-12 Score=119.11 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=118.3
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch------HhHHHHHHHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL------LSLMQMAKTTAILTK 190 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~------~~l~~~~~~~~a~~~ 190 (286)
|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|..+| |+++.+-. ............+..
T Consensus 13 v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (259)
T TIGR01929 13 IAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQ 92 (259)
T ss_pred EEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHH
Confidence 5666666555668999999999999999875 6778999998866 35664310 000000011123445
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSSE 253 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A~ 253 (286)
+...++|+|+.|.|+|+|||. .++++||++||.++++|++...+ .+.+.+|.. ++.+..+|+
T Consensus 93 l~~~~kPvIAav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~ 171 (259)
T TIGR01929 93 IRTCPKPVIAMVNGYAIGGGH-VLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE 171 (259)
T ss_pred HHhCCCCEEEEEcCEEehHHH-HHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHH
Confidence 667899999999999999996 58889999999999999886322 144445533 456778999
Q ss_pred HHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 254 FLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.+.|+||.|++++++.+.+.++++.+.+.
T Consensus 172 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 202 (259)
T TIGR01929 172 QALDMGLVNTVVPLADLEKETVRWCREILQK 202 (259)
T ss_pred HHHHcCCcccccCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999989999998888887754
No 60
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.49 E-value=1.6e-12 Score=118.48 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=121.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch------HhHHHHHHH-HHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL------LSLMQMAKT-TAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~------~~l~~~~~~-~~a~ 188 (286)
.|+++..|..-..++++.+....+.++++.+. +..+.+|+|..+| |+++.+-. .....+.+. ...+
T Consensus 20 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 99 (269)
T PRK06127 20 GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQ 99 (269)
T ss_pred CEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHH
Confidence 36677777666779999999999999999985 5678999998866 45664310 001112221 2234
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCC
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQS 251 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~ 251 (286)
..+...++|+|++|.|+|+|||. .++++||++||.++++|+++... .+.+.+|.. ++.+..+
T Consensus 100 ~~i~~~~kPvIaav~G~a~GgG~-~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~ 178 (269)
T PRK06127 100 AALADYAKPTIACIRGYCIGGGM-GIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFD 178 (269)
T ss_pred HHHHhCCCCEEEEECCEEecHHH-HHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 56778899999999999999996 58889999999999999876221 134444432 4567789
Q ss_pred HHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 252 SEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
|+.+.+.|+||.|++++++.+.+.++++.+...
T Consensus 179 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 211 (269)
T PRK06127 179 AAEALRIGLVHRVTAADDLETALADYAATIAGN 211 (269)
T ss_pred HHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998887653
No 61
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.48 E-value=1.5e-12 Score=118.14 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=119.6
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCCC------cchhhch----HhHHHH-HHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATGG------ARMQEGL----LSLMQM-AKTTAILTK 190 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsgG------a~i~Eg~----~~l~~~-~~~~~a~~~ 190 (286)
.|+++..|..-..++++......+.++++.+. +..+.+|+|...|+ +++.+-. ...... ..+...+..
T Consensus 13 ~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (260)
T PRK07657 13 HVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEM 92 (260)
T ss_pred CEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHH
Confidence 35666666555679999999999999999874 67789999988763 4664411 111111 122234556
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSE 253 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~ 253 (286)
+...++|+|++|.|.|+|||. .++++||++|+.++++|++....+ +.+.+|.. ++.+..+|+
T Consensus 93 l~~~~kPvIaav~G~a~GgG~-~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~ 171 (260)
T PRK07657 93 VEQLPQPVIAAINGIALGGGL-ELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQ 171 (260)
T ss_pred HHhCCCCEEEEEcCEeechHH-HHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHH
Confidence 677899999999999999996 578899999999999988763221 34444432 446678999
Q ss_pred HHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 254 FLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.+.|+||.|++++++.+.+.++++.+...
T Consensus 172 eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 202 (260)
T PRK07657 172 EAKEIGLVEFVVPAHLLEEKAIEIAEKIASN 202 (260)
T ss_pred HHHHcCCCCeecCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999888877654
No 62
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.48 E-value=1.4e-12 Score=118.02 Aligned_cols=161 Identities=9% Similarity=0.048 Sum_probs=117.2
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH----hHHHH-HHHHHHH-HH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL----SLMQM-AKTTAIL-TK 190 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~----~l~~~-~~~~~a~-~~ 190 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++.+-.. ..... ......+ ..
T Consensus 8 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06563 8 HVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTV 87 (255)
T ss_pred CEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHH
Confidence 46666666555679999999999999999874 6678999998866 567654100 00001 1111112 23
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSE 253 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~ 253 (286)
+...++|+|++|.|+|+|||. .++++||++||.++++|++..... +.+.+|.. ++.+..+|+
T Consensus 88 l~~~~kPvIAav~G~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~ 166 (255)
T PRK06563 88 GRRLSKPLVVAVQGYCLTLGI-ELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQ 166 (255)
T ss_pred HhcCCCCEEEEEcCeeecHHH-HHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHH
Confidence 567899999999999999996 578899999999999988752211 33444532 456778999
Q ss_pred HHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 254 FLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
++.+.|+||.|++++++.+...++++.+...
T Consensus 167 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 197 (255)
T PRK06563 167 EALRLGLVQEVVPPGEQLERAIELAERIARA 197 (255)
T ss_pred HHHHcCCCcEeeCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988888888888877653
No 63
>KOG1680|consensus
Probab=99.48 E-value=2.9e-13 Score=121.26 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=126.7
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH-hHHH--HHHHHHHHHHH
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL-SLMQ--MAKTTAILTKL 191 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~-~l~~--~~~~~~a~~~l 191 (286)
...|+++.-|.--..+++...+...+.++++..+ +...|+|+|..+| |+++.|-.. .... .....+.+..+
T Consensus 44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~ 123 (290)
T KOG1680|consen 44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLV 123 (290)
T ss_pred CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhh
Confidence 4567777777777789999999999999999875 6779999999988 567744110 0000 01122233444
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~ 254 (286)
++...|+|+.|.|.|.|||. -++|.||+++|.++|.|++..+++ +++++|.. ++....+|++
T Consensus 124 ~~~~KPvIaainG~AlgGG~-ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~Aqe 202 (290)
T KOG1680|consen 124 SRLKKPVIAAINGFALGGGL-ELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQE 202 (290)
T ss_pred hhcccceeEeeeceeeccch-hhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHH
Confidence 45789999999999999996 588999999999999999997775 45556543 4577889999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcCC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKKS 285 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~~ 285 (286)
+.+.|+|+.|+|.+++.....+|.+.+.++|
T Consensus 203 A~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~ 233 (290)
T KOG1680|consen 203 AKKIGLVNKVVPSGDALGEAVKLAEQIAKNS 233 (290)
T ss_pred HHhCCceeEeecchhHHHHHHHHHHHHHhCC
Confidence 9999999999999998888888888887653
No 64
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.48 E-value=1.2e-12 Score=118.29 Aligned_cols=160 Identities=11% Similarity=0.136 Sum_probs=116.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH--hHHHHHHHHHHHHHHhcC
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL--SLMQMAKTTAILTKLSKK 194 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~--~l~~~~~~~~a~~~l~~~ 194 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++.+-.. ......+.+..+. ....
T Consensus 12 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 90 (254)
T PRK08252 12 RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLT-ERPP 90 (254)
T ss_pred CEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHH-HhcC
Confidence 46666666555679999999999999999985 6679999998766 566654110 0000111121121 1357
Q ss_pred CCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHHHH
Q psy5220 195 KIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFLLK 257 (286)
Q Consensus 195 ~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~~~ 257 (286)
++|+|++|.|+|+|||. .++++||++||.++++|+++..++ +.+.+|.. ++.+..+|+.+++
T Consensus 91 ~kPvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~ 169 (254)
T PRK08252 91 RKPLIAAVEGYALAGGF-ELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHE 169 (254)
T ss_pred CCCEEEEECCEEehHHH-HHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHH
Confidence 89999999999999996 588899999999999998763321 23334432 4567789999999
Q ss_pred cCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 258 KGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 258 ~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.|+||.|++++++.+.+.++++.+...
T Consensus 170 ~Glv~~vv~~~~l~~~a~~~a~~l~~~ 196 (254)
T PRK08252 170 LGLVNRLTEPGQALDAALELAERIAAN 196 (254)
T ss_pred cCCcceecCcchHHHHHHHHHHHHHhC
Confidence 999999999988888888888877654
No 65
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.48 E-value=8.7e-13 Score=118.33 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=118.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH----hHHHH-HHHHHHHHHHh
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL----SLMQM-AKTTAILTKLS 192 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~----~l~~~-~~~~~a~~~l~ 192 (286)
|+++..|..-..++++.+..+.+.++++.+. +.++.+|++..++ |.++.+-.. ....+ ..+...+.++.
T Consensus 8 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (245)
T PF00378_consen 8 VATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLA 87 (245)
T ss_dssp EEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccccch
Confidence 4444444444789999999999999999985 5567788887766 556644111 11122 23333456677
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
+.++|+|++|.|.|+|||+ .++++||++|+.+++.|+++..+. +.+.+|.. ++.+..+|+.+
T Consensus 88 ~~~kp~Iaav~G~a~GgG~-~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA 166 (245)
T PF00378_consen 88 NFPKPTIAAVNGHAVGGGF-ELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEA 166 (245)
T ss_dssp HSSSEEEEEESSEEETHHH-HHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHH
T ss_pred hhhhheeeccccccccccc-ccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccchhHHH
Confidence 7899999999999999996 588899999999999988763332 23333332 34566789999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.|+||.|++++++.+.+.++++.+...
T Consensus 167 ~~~Glv~~v~~~~~l~~~a~~~a~~l~~~ 195 (245)
T PF00378_consen 167 LELGLVDEVVPDEELDEEALELAKRLAAK 195 (245)
T ss_dssp HHTTSSSEEESGGGHHHHHHHHHHHHHTS
T ss_pred HhhcceeEEcCchhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999888764
No 66
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.48 E-value=9.2e-13 Score=119.22 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=119.4
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH--hH-HH-HHHHHHHHHHHh
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL--SL-MQ-MAKTTAILTKLS 192 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~--~l-~~-~~~~~~a~~~l~ 192 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|...| |+++.+-.. .. .+ .......+..+.
T Consensus 14 ~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
T PRK06688 14 GVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIA 93 (259)
T ss_pred CEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHH
Confidence 36666666555679999999999999999875 5679999998765 566644100 00 11 122223445666
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
..++|+|++|.|.|+|||. .++++||++||.++++|++..... +.+.+|.. ++.+..+|+.+
T Consensus 94 ~~~kp~Iaav~G~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA 172 (259)
T PRK06688 94 ALPKPVVAAVNGPAVGVGV-SLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEA 172 (259)
T ss_pred cCCCCEEEEECCeeecHHH-HHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHH
Confidence 7899999999999999996 588899999999999998863221 33334432 34667899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.|+||.|++++++.+.+.++++.+...
T Consensus 173 ~~~Glv~~v~~~~~l~~~a~~~a~~i~~~ 201 (259)
T PRK06688 173 LRIGLVNRVVPAAELDAEADAQAAKLAAG 201 (259)
T ss_pred HHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 99999999999888989988888877653
No 67
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.48 E-value=1.4e-12 Score=118.94 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=120.5
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch---Hh----------H-
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL---LS----------L- 178 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~---~~----------l- 178 (286)
++|..|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|..+| |+++.+-. .. +
T Consensus 11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06210 11 VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFV 90 (272)
T ss_pred ECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhh
Confidence 555457777777656779999999999999999875 5678999998766 55664410 00 0
Q ss_pred -HHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc--
Q psy5220 179 -MQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK-- 244 (286)
Q Consensus 179 -~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~-- 244 (286)
.....+...+..+...++|+|++|.|+|+|||. .++++||++||.++++|+++.++. +++.+|..
T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~-~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 169 (272)
T PRK06210 91 GNRRPDYQTRYHFLTALRKPVIAAINGACAGIGL-THALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANA 169 (272)
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHH-HHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHH
Confidence 000111123455667899999999999999996 578899999999999998653321 33344432
Q ss_pred ----CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 245 ----LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 245 ----l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
++.+..+|+.+++.|+||.|++++++.+.+.++++.+..
T Consensus 170 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~ 212 (272)
T PRK06210 170 LDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLAR 212 (272)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999998888888888877764
No 68
>PLN02888 enoyl-CoA hydratase
Probab=99.48 E-value=1.3e-12 Score=118.93 Aligned_cols=160 Identities=11% Similarity=0.147 Sum_probs=118.0
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchHhHH-HHHH-HHHHHHHHhcCC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLLSLM-QMAK-TTAILTKLSKKK 195 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~~l~-~~~~-~~~a~~~l~~~~ 195 (286)
|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|...| |+++.+-..... .... ....+..+.+.+
T Consensus 20 v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (265)
T PLN02888 20 IATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCR 99 (265)
T ss_pred EEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCC
Confidence 6666666555669999999999999999875 6778999998766 567754110000 0001 112344566789
Q ss_pred CCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHHHHc
Q psy5220 196 IPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFLLKK 258 (286)
Q Consensus 196 vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~~~~ 258 (286)
+|+|++|.|+|+|||. .++++||++|+.++++|++...+. +.+.+|.. ++.+..+|+.+.+.
T Consensus 100 kPvIaav~G~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~ 178 (265)
T PLN02888 100 KPIIGAINGFAITAGF-EIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERW 178 (265)
T ss_pred CCEEEEECCeeechHH-HHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence 9999999999999996 588899999999999987753221 33444442 45677899999999
Q ss_pred CccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 259 GALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 259 G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
|+||.|++++++.+...++.+.+...
T Consensus 179 Glv~~vv~~~~l~~~a~~~a~~la~~ 204 (265)
T PLN02888 179 GLVNHVVEESELLKKAREVAEAIIKN 204 (265)
T ss_pred CCccEeeChHHHHHHHHHHHHHHHhC
Confidence 99999999988888888888877653
No 69
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.48 E-value=1.5e-12 Score=118.22 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=116.4
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch---HhHHHH-HHHHHHHHHHh
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL---LSLMQM-AKTTAILTKLS 192 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~---~~l~~~-~~~~~a~~~l~ 192 (286)
|+++..|..- .++++....+.+.++++.+. +..+.+|+|..+| |+++.+-. ...... ...+..+.++.
T Consensus 13 v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (261)
T PRK03580 13 ILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIF 91 (261)
T ss_pred EEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHH
Confidence 5555555443 49999999999999999875 6678999998766 44664410 000001 11122355677
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
..++|+|++|.|+|+|||. .++++||++|+.++|+|++..... +.+.+|.. ++.+..+|+.+
T Consensus 92 ~~~kPvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA 170 (261)
T PRK03580 92 DLDKPVIAAVNGYAFGGGF-ELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEA 170 (261)
T ss_pred hCCCCEEEEECCeeehHHH-HHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHH
Confidence 7899999999999999996 578899999999999998753221 33334432 34667899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.|+||.|++++++.+.+.++++.+...
T Consensus 171 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 199 (261)
T PRK03580 171 LRWGIVNRVVPQAELMDRARELAQQLVNS 199 (261)
T ss_pred HHcCCCcEecCHhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998887654
No 70
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.48 E-value=1.1e-12 Score=121.43 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=120.9
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchHh-------------------
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLLS------------------- 177 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~~------------------- 177 (286)
.|+.+..|..-..++++..+...+.++++.+. +..+.+|+|...| |+++.+-...
T Consensus 19 ~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (302)
T PRK08272 19 RIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNH 98 (302)
T ss_pred CEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccc
Confidence 47777777666779999999999999999885 6779999998866 6677541000
Q ss_pred --------H---HHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh--------hh
Q psy5220 178 --------L---MQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV--------IK 238 (286)
Q Consensus 178 --------l---~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v--------i~ 238 (286)
. ..+......+..+...++|+|++|.|+|+|||. .++++||++||.++|+|+++..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~-~lalacD~~ias~~a~f~~pe~~~gg~~~~~~~~ 177 (302)
T PRK08272 99 LPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGT-DIALHCDQVIAADDAKIGYPPTRVWGVPATGMWA 177 (302)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhH-HHHHhCCEEEEeCCCEecCcchhcccCChHHHHH
Confidence 0 001122223445667899999999999999996 588899999999999998765432 12
Q ss_pred hhhhcc------CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 239 NTVKEK------LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 239 ~~~g~~------l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
..+|.. ++.+..+|+.+.+.|+||.|++++++.+.+.++.+.+...
T Consensus 178 ~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 178 YRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 223332 4577789999999999999999999999999998888754
No 71
>PLN02921 naphthoate synthase
Probab=99.48 E-value=1.8e-12 Score=121.34 Aligned_cols=161 Identities=14% Similarity=0.213 Sum_probs=120.6
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch----HhHHHHHH--HHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL----LSLMQMAK--TTAILT 189 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~----~~l~~~~~--~~~a~~ 189 (286)
.|+++..|.--..++++......+.++++.+. +..+.+|+|..+| |+++.+-. ........ ....+.
T Consensus 76 ~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~ 155 (327)
T PLN02921 76 GIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQI 155 (327)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHH
Confidence 46666666655679999999999999999875 6678999998765 45664310 00001111 112344
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCH
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A 252 (286)
.+...++|+|+.|.|+|+|||. .++++||++||.++|.|++..+++ +.+.+|.. ++.+..+|
T Consensus 156 ~l~~~~kPvIAaVnG~a~GGG~-~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A 234 (327)
T PLN02921 156 QIRRLPKPVIAMVAGYAVGGGH-ILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTA 234 (327)
T ss_pred HHHhCCCCEEEEECCEEecHHH-HHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence 5667899999999999999996 588899999999999998865432 33444533 45677899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+++.+.|+||.|++++++.+.+.++++.+...
T Consensus 235 ~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 266 (327)
T PLN02921 235 SEALKMGLVNTVVPLDELEGETVKWCREILRN 266 (327)
T ss_pred HHHHHCCCceEEeCHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999988887654
No 72
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.48 E-value=1.6e-12 Score=118.16 Aligned_cols=161 Identities=14% Similarity=0.178 Sum_probs=118.2
Q ss_pred eEEEEEEcCcccccCCCh-HHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH----------hH-HHHHH-
Q psy5220 123 PLVVAVFEFEFMGGSMGS-VVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL----------SL-MQMAK- 183 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~-~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~----------~l-~~~~~- 183 (286)
.|+++..|..-..++++. ...+.+.++++.+. +..+.+|+|...| |+++.+-.. .. ..+..
T Consensus 12 ~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (266)
T PRK09245 12 HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHG 91 (266)
T ss_pred CEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHH
Confidence 466666666556789985 88999999999875 6678999998765 567754110 00 01111
Q ss_pred HHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CC
Q psy5220 184 TTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LP 246 (286)
Q Consensus 184 ~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~ 246 (286)
+...+..+...++|+|++|.|+|+|||. .++++||++|+.++++|+++..++ +.+.+|.. ++
T Consensus 92 ~~~~~~~l~~~~kpvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~ 170 (266)
T PRK09245 92 IQRIPLALYNLEVPVIAAVNGPAIGAGC-DLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFT 170 (266)
T ss_pred HHHHHHHHHcCCCCEEEEECCEeecHHH-HHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHc
Confidence 1123455667899999999999999996 578899999999999988753221 34444443 45
Q ss_pred CCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 247 DGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 247 ~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+..+|+.+.+.|+||.|++++++.+.+.++++.+...
T Consensus 171 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 208 (266)
T PRK09245 171 GDAIDAATALEWGLVSRVVPADQLLPAARALAERIAAN 208 (266)
T ss_pred CCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 66789999999999999999989988888888887654
No 73
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.48 E-value=1.8e-12 Score=117.55 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=119.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch---H-hHHHHHHH-HHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL---L-SLMQMAKT-TAILTK 190 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~---~-~l~~~~~~-~~a~~~ 190 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++++-. . ....+... ...+..
T Consensus 13 ~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (260)
T PRK05809 13 HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRK 92 (260)
T ss_pred CEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHH
Confidence 36666776655679999999999999999875 6778999998765 45665410 0 00111111 123455
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSE 253 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~ 253 (286)
+...++|+|++|.|.|.|||. .++++||++++.++++|+++.... +++.+|.. ++.+..+|+
T Consensus 93 l~~~~kPvIaav~G~a~GgG~-~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~ 171 (260)
T PRK05809 93 LENLDKPVIAAINGFALGGGC-ELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAE 171 (260)
T ss_pred HHcCCCCEEEEEcCeeecHHH-HHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHH
Confidence 677899999999999999995 588899999999999988753221 33444432 446678999
Q ss_pred HHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 254 FLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.+.|+||.|++++++.+.+.++++.+...
T Consensus 172 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 202 (260)
T PRK05809 172 EALRIGLVNKVVEPEKLMEEAKALANKIAAN 202 (260)
T ss_pred HHHHcCCCCcccChHHHHHHHHHHHHHHHhC
Confidence 9999999999999889989998888877654
No 74
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.47 E-value=2.1e-12 Score=117.04 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=116.4
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-------HhHHH-HHHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-------LSLMQ-MAKTTAILT 189 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-------~~l~~-~~~~~~a~~ 189 (286)
|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|...| |+++++-. ....+ ...+...+.
T Consensus 13 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (260)
T PRK07511 13 TLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIR 92 (260)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 5555555444679999999999999999986 6678999998755 66775411 00111 122223345
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCH
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A 252 (286)
.+...++|+|++|.|+|+|||. .++++||++|++++|+|+++..+ .+...+|.. ++.+..+|
T Consensus 93 ~l~~~~kpvIAav~G~a~GgG~-~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a 171 (260)
T PRK07511 93 AIRAFPKPVIAAVEGAAAGAGF-SLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISA 171 (260)
T ss_pred HHHcCCCCEEEEECCeeehHHH-HHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCH
Confidence 6677899999999999999996 47889999999999999876321 133334432 45677899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
+.+++.|+||.|++++++.+.+.++++.+..
T Consensus 172 ~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~ 202 (260)
T PRK07511 172 ERLHALGVVNRLAEPGQALAEALALADQLAA 202 (260)
T ss_pred HHHHHcCCccEeeCchHHHHHHHHHHHHHHh
Confidence 9999999999999998888888888776654
No 75
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.47 E-value=1.7e-12 Score=117.86 Aligned_cols=161 Identities=13% Similarity=0.161 Sum_probs=117.5
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH-----hHHH--H-HHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL-----SLMQ--M-AKTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~-----~l~~--~-~~~~~a~ 188 (286)
.|+++..|.--..++++....+.+.++++.+. +..+.+|+|...| |+++++-.. .... . ...+..+
T Consensus 14 ~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (263)
T PRK07799 14 HTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDAL 93 (263)
T ss_pred CEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHH
Confidence 45666666555679999999999999999875 6678999998866 567754110 0000 0 0111223
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCC
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQS 251 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~ 251 (286)
.++...++|+|+.|.|+|+|||. .++++||++||.++++|+++.... +.+.+|.. ++.+..+
T Consensus 94 ~~~~~~~kpvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~ 172 (263)
T PRK07799 94 LKGRRLTKPLIAAVEGPAIAGGT-EILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHIT 172 (263)
T ss_pred HHHhcCCCCEEEEECCeEeccHH-HHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 34567899999999999999996 578899999999999988752221 33344432 4567789
Q ss_pred HHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 252 SEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
|+.+.+.|+||.|++++++.+.+.++++.+...
T Consensus 173 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~ 205 (263)
T PRK07799 173 AAEAKEIGLIGHVVPDGQALDKALELAELINAN 205 (263)
T ss_pred HHHHHHcCCccEecCcchHHHHHHHHHHHHHhc
Confidence 999999999999999988888888888877653
No 76
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.47 E-value=2e-12 Score=117.00 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=117.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhc--h---HhHHHH-HHHHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEG--L---LSLMQM-AKTTAILTKL 191 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg--~---~~l~~~-~~~~~a~~~l 191 (286)
|+++..|..-. ++++.+..+.+.++++.+. +..+.+|+|...| |+++.+- . ....++ ......+..+
T Consensus 12 v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (257)
T PRK07658 12 VAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERV 90 (257)
T ss_pred EEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHH
Confidence 55555554434 9999999999999999875 6778999998766 6677541 0 011111 1122234566
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~ 254 (286)
...++|+|++|.|+|+|||. .++++||++|+.++++|++....+ +.+.+|.. ++.+..+|+.
T Consensus 91 ~~~~kpvIAav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e 169 (257)
T PRK07658 91 EKFSKPVIAAIHGAALGGGL-ELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAE 169 (257)
T ss_pred HhCCCCEEEEEcCeeeeHHH-HHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHH
Confidence 77899999999999999995 588899999999999988763221 33444442 4567789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+++.|+||.|++++++.+.+.++++.+...
T Consensus 170 A~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 199 (257)
T PRK07658 170 ALKWGLVNGVFPEETLLDDAKKLAKKIAGK 199 (257)
T ss_pred HHHcCCcCeecChhHHHHHHHHHHHHHHhC
Confidence 999999999999888888888888777653
No 77
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.47 E-value=1.9e-12 Score=119.27 Aligned_cols=161 Identities=9% Similarity=0.129 Sum_probs=119.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch--Hh------------------
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL--LS------------------ 177 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~--~~------------------ 177 (286)
|+++..|.--..++++....+.+.++++.+. +..+.+|+|..+| |++++|-. ..
T Consensus 14 Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
T PRK08290 14 IARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATK 93 (288)
T ss_pred EEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccc
Confidence 6666666655679999999999999999875 6789999998876 56765410 00
Q ss_pred ------HHH-HHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh---------hhhhh
Q psy5220 178 ------LMQ-MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV---------IKNTV 241 (286)
Q Consensus 178 ------l~~-~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v---------i~~~~ 241 (286)
+.. ...+...+..+.+.++|+|++|.|.|+|||. .++++||++||.++|+|+++.... ....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~-~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~i 172 (288)
T PRK08290 94 PGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGL-MLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWEL 172 (288)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHH-HHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHh
Confidence 000 1112223345667899999999999999996 578899999999998877653221 12234
Q ss_pred hcc------CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcCC
Q psy5220 242 KEK------LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKKS 285 (286)
Q Consensus 242 g~~------l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~~ 285 (286)
|.. ++.+..+|+.+.+.|+||.|++++++.+.+.++++.+.+.|
T Consensus 173 G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 222 (288)
T PRK08290 173 GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP 222 (288)
T ss_pred hHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 432 55778899999999999999999999999999998887643
No 78
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.47 E-value=2e-12 Score=116.97 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=122.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHh-CCCcEEEEEeCC-----Ccchhhc-----hHhHH-HHHHHHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLE-QKIPFVCITATG-----GARMQEG-----LLSLM-QMAKTTAILTKL 191 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~-~~iPlV~l~dsg-----Ga~i~Eg-----~~~l~-~~~~~~~a~~~l 191 (286)
|+++..|.--..++++....+.+..+++.+.+ ..+.+|+|..+| |+++.+- ..... .+......+..+
T Consensus 15 v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (257)
T COG1024 15 IAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRAL 94 (257)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHH
Confidence 77777777666699999999999999999875 489999999877 5677541 11111 123333345677
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~ 254 (286)
.+.++|+|+.|.|+|+|||. .++++||+++|.++++|++....+ +.+.+|.. ++.+..+|++
T Consensus 95 ~~~~kPvIAav~G~a~GgG~-eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~e 173 (257)
T COG1024 95 ADLPKPVIAAVNGYALGGGL-ELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAE 173 (257)
T ss_pred HhCCCCEEEEEcceEeechh-hhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHH
Confidence 78899999999999999995 688999999999999998874432 33344432 4577789999
Q ss_pred HHHcCccceEeCc-hhHHHHHHHHHHHHh
Q psy5220 255 LLKKGALDMIIDR-RKLRFKIANLLALLQ 282 (286)
Q Consensus 255 ~~~~G~vD~Vv~~-~e~~~~l~~~L~~l~ 282 (286)
+.+.|+||.++++ +++.+...++++.+.
T Consensus 174 A~~~Glv~~vv~~~~~l~~~a~~~a~~~a 202 (257)
T COG1024 174 ALELGLVDEVVPDAEELLERALELARRLA 202 (257)
T ss_pred HHHcCCcCeeeCCHHHHHHHHHHHHHHHc
Confidence 9999999999986 588888888888765
No 79
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.47 E-value=2.6e-12 Score=115.86 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=117.3
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH---hHHHHHHHHHHHHHHhcC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL---SLMQMAKTTAILTKLSKK 194 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~---~l~~~~~~~~a~~~l~~~ 194 (286)
|+++..|..-..++++....+.+.++++.+. +..+.+|+|.+.| |.++++-.. ....... ......+.+.
T Consensus 15 v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~~l~~~ 93 (249)
T PRK07110 15 IAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTE-ANLYSLALNC 93 (249)
T ss_pred EEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhh-HHHHHHHHcC
Confidence 6666666444669999999999999999875 5678999998766 556643100 0000111 1234556778
Q ss_pred CCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCHHHHHH
Q psy5220 195 KIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSSEFLLK 257 (286)
Q Consensus 195 ~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A~~~~~ 257 (286)
++|+|++|.|+|+|||. .++++||++++.++++|+++..+ .+.+.+|.. ++.+..+|+.+.+
T Consensus 94 ~kPvIaav~G~a~GgG~-~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~ 172 (249)
T PRK07110 94 PIPVIAAMQGHAIGGGL-VLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKK 172 (249)
T ss_pred CCCEEEEecCceechHH-HHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHH
Confidence 99999999999999996 57889999999999988775322 133444432 4567789999999
Q ss_pred cCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 258 KGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 258 ~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.|+||.|++++++.+.+.++++.+...
T Consensus 173 ~Glv~~vv~~~~l~~~a~~~a~~la~~ 199 (249)
T PRK07110 173 RGVPFPVLPRAEVLEKALELARSLAEK 199 (249)
T ss_pred cCCCeEEeChHHHHHHHHHHHHHHHhC
Confidence 999999999999989999888888654
No 80
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.47 E-value=3e-12 Score=114.01 Aligned_cols=159 Identities=12% Similarity=0.128 Sum_probs=115.4
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-----Ccchhhc---hHhHHH-HHHHHHHHHHHhc
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-----GARMQEG---LLSLMQ-MAKTTAILTKLSK 193 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-----Ga~i~Eg---~~~l~~-~~~~~~a~~~l~~ 193 (286)
.|+++..|.. ..++++......+.++++.+. ....+|++...| |+++.+- ...... .......+.++..
T Consensus 12 ~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~ 89 (229)
T PRK06213 12 GVATITLDDG-KVNALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLS 89 (229)
T ss_pred CEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHc
Confidence 3555555543 359999999999999999887 667899998876 5676541 010111 1222234556677
Q ss_pred CCCCEEEEEcCCcchhhhhhccccccEEEEcCC-cEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 194 KKIPFISVLTNPTMGGVSASFAFMGDIVIAEPG-ALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 194 ~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~-A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
.++|+|++|.|+|+|||. .++++||+++|.++ ++|++...+. +.+.+|.. ++.+..+|+.+
T Consensus 90 ~~kPvIAav~G~a~GgG~-~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA 168 (229)
T PRK06213 90 HPKPVIVACTGHAIAKGA-FLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEA 168 (229)
T ss_pred CCCCEEEEEcCeeeHHHH-HHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHH
Confidence 899999999999999996 57889999999999 8887753221 12222221 34667899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
.+.|+||.|++++++.+...++.+.+...
T Consensus 169 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 197 (229)
T PRK06213 169 VAAGFLDEVVPPEQLLARAQAAARELAGL 197 (229)
T ss_pred HHCCCceeccChHHHHHHHHHHHHHHhcC
Confidence 99999999999889999999988887653
No 81
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.46 E-value=2.3e-12 Score=119.04 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=118.9
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch--H------------------
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL--L------------------ 176 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~--~------------------ 176 (286)
.|+++..|..-..++++......+.++++.+. +..+.+|+|...| |+++.+-. .
T Consensus 13 ~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (296)
T PRK08260 13 GIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRAD 92 (296)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccc
Confidence 36666666555679999999999999999875 6779999998866 56765411 0
Q ss_pred -hHHHHHHHH-HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhc
Q psy5220 177 -SLMQMAKTT-AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKE 243 (286)
Q Consensus 177 -~l~~~~~~~-~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~ 243 (286)
....+...+ ..+..+...++|+|++|.|.|+|||. .++++||++||.++|+|++...++ +.+.+|.
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~-~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 171 (296)
T PRK08260 93 PSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGA-TMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGL 171 (296)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhH-HHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCH
Confidence 001111111 23455667899999999999999996 588899999999999998864321 3334443
Q ss_pred c------CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 244 K------LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 244 ~------l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
. ++.+..+|+.+.+.|+||.|++++++.+.+.++++.+..
T Consensus 172 ~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~ 217 (296)
T PRK08260 172 QTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIAD 217 (296)
T ss_pred HHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHh
Confidence 2 456678999999999999999998888888888877754
No 82
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.46 E-value=1.7e-12 Score=117.10 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=115.7
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH-----hHHHHHHHHHHHHHHh
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL-----SLMQMAKTTAILTKLS 192 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~-----~l~~~~~~~~a~~~l~ 192 (286)
|+++..|..-..++++.+..+.+.++++.+. +..+.+|+|..+| |+++.+-.. ...........+..+.
T Consensus 13 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (249)
T PRK05870 13 VALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVA 92 (249)
T ss_pred EEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5666666555679999999999999999875 6678999998866 567754110 0111223333455677
Q ss_pred cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHH
Q psy5220 193 KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFL 255 (286)
Q Consensus 193 ~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~ 255 (286)
+.++|+|++|.|+|+|||. .++++||++||.++++|++...++ +.+.+|.. ++.+..+|+.+
T Consensus 93 ~~~kPvIaav~G~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA 171 (249)
T PRK05870 93 SCPLPTIAAVNGAAVGAGL-NLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAA 171 (249)
T ss_pred hCCCCEEEEECCEeEchhH-HHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHH
Confidence 7899999999999999996 588899999999999987653221 33444432 45677899999
Q ss_pred HHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 256 LKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 256 ~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
++.|+||.|+ +++.+.+.++++.+...
T Consensus 172 ~~~Glv~~vv--~~l~~~a~~~a~~la~~ 198 (249)
T PRK05870 172 VRHGLALMVA--DDPVAAALELAAGPAAA 198 (249)
T ss_pred HHcCCHHHHH--hhHHHHHHHHHHHHHhC
Confidence 9999999999 56777777777776543
No 83
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.45 E-value=2.6e-12 Score=115.46 Aligned_cols=153 Identities=14% Similarity=0.231 Sum_probs=110.2
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-----CcchhhchHhHHHH-HHHHHHHHHHhcCCC
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-----GARMQEGLLSLMQM-AKTTAILTKLSKKKI 196 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-----Ga~i~Eg~~~l~~~-~~~~~a~~~l~~~~v 196 (286)
.|+++..|..-..++++......+.++++.+.+..+.+|+|...| |+++.+... .... ..+...+..+.+.++
T Consensus 9 ~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~l~~~~k 87 (243)
T PRK07854 9 QVLTIELQRPERRNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVY-ADDFPDALIEMLHAIDAAPV 87 (243)
T ss_pred CEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchh-HHHHHHHHHHHHHHHHhCCC
Confidence 366666666557789999999999999999877789999998765 567754211 1111 112223445667799
Q ss_pred CEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCHHHHHHcC
Q psy5220 197 PFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSSEFLLKKG 259 (286)
Q Consensus 197 P~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A~~~~~~G 259 (286)
|+|++|.|.|+|||. .++++||++||.++++|+++.... +.+.+|.. ++.+..+|+++.+.|
T Consensus 88 P~Iaav~G~a~GgG~-~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~G 166 (243)
T PRK07854 88 PVIAAINGPAIGAGL-QLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATG 166 (243)
T ss_pred CEEEEecCcccccHH-HHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCC
Confidence 999999999999996 578899999999999998763221 33344432 456778999999999
Q ss_pred ccceEeCchhHHHHHHHH
Q psy5220 260 ALDMIIDRRKLRFKIANL 277 (286)
Q Consensus 260 ~vD~Vv~~~e~~~~l~~~ 277 (286)
+||.|++.+++.+.++++
T Consensus 167 lv~~v~~~~~a~~~a~~l 184 (243)
T PRK07854 167 MANRIGTLADAQAWAAEI 184 (243)
T ss_pred CcccccCHHHHHHHHHHH
Confidence 999997654444444443
No 84
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.45 E-value=2.2e-12 Score=119.35 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=121.0
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH-------------hHH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL-------------SLM 179 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~-------------~l~ 179 (286)
.+|. |+++..|.--..++++..+.+.+.++++.+. +..+.+|+|...| |+++.+... ...
T Consensus 11 ~~~~-Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (298)
T PRK12478 11 TAGP-VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGK 89 (298)
T ss_pred ccCC-EEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchh
Confidence 3443 5666666555779999999999999999885 6789999999876 567653110 000
Q ss_pred HH----HH---HHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh---h-----hhhhhcc
Q psy5220 180 QM----AK---TTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV---I-----KNTVKEK 244 (286)
Q Consensus 180 ~~----~~---~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v---i-----~~~~g~~ 244 (286)
.+ .. ....+..+...++|+|+.|.|+|+|||. .++++||++||.++|+|++...++ + ...+|..
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~-~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~~~~vG~~ 168 (298)
T PRK12478 90 DFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGAS-DYALCADIVIASDDAVIGTPYSRMWGAYLTGMWLYRLSLA 168 (298)
T ss_pred hhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHH-HHHHHCCEEEEcCCcEEeccccccccCCchhHHHHHhhHH
Confidence 00 00 0112345667899999999999999996 588899999999999998865542 1 1123332
Q ss_pred ------CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 245 ------LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 245 ------l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
++.+..+|+.+++.|+||.|++++++.+.+.++.+.+...
T Consensus 169 ~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 214 (298)
T PRK12478 169 KVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARI 214 (298)
T ss_pred HHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 4567789999999999999999999999999999888754
No 85
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.44 E-value=3.1e-12 Score=115.78 Aligned_cols=161 Identities=13% Similarity=0.148 Sum_probs=116.9
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH-hHHHHHH--HHHHHHHHhc
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL-SLMQMAK--TTAILTKLSK 193 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~-~l~~~~~--~~~a~~~l~~ 193 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|...| |+++.+-.. ....... .......+..
T Consensus 12 ~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (254)
T PRK08259 12 PVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMR 91 (254)
T ss_pred CEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhc
Confidence 46666777666779999999999999999875 6678899998765 667754110 0000000 0010111225
Q ss_pred CCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhcc------CCCCCCCHHHHH
Q psy5220 194 KKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEK------LPDGFQSSEFLL 256 (286)
Q Consensus 194 ~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~------l~~~~~~A~~~~ 256 (286)
.++|+|++|.|+|+|||. .++++||++||.++++|++...+ .+.+.+|.. ++.+..+|+.++
T Consensus 92 ~~kPvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~ 170 (254)
T PRK08259 92 LSKPVIAAVSGYAVAGGL-ELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEAL 170 (254)
T ss_pred CCCCEEEEECCEEEhHHH-HHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHH
Confidence 799999999999999996 57889999999999988775321 133444443 456778999999
Q ss_pred HcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 257 KKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 257 ~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.|+||.|++++++.+.+.++++.+...
T Consensus 171 ~~Glv~~vv~~~~l~~~a~~~a~~la~~ 198 (254)
T PRK08259 171 AIGLANRVVPKGQARAAAEELAAELAAF 198 (254)
T ss_pred HcCCCCEeeChhHHHHHHHHHHHHHHhC
Confidence 9999999999999999998888877654
No 86
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.43 E-value=8.6e-12 Score=112.68 Aligned_cols=148 Identities=13% Similarity=0.163 Sum_probs=105.0
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-HhHHH-HHHHHHHHHH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-LSLMQ-MAKTTAILTK 190 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-~~l~~-~~~~~~a~~~ 190 (286)
++|. |+++..|..- .++++....+.+.++++.+. +..+.+|+|...| |+++++-. ..... .......+.+
T Consensus 7 ~~~~-v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 84 (251)
T TIGR03189 7 RDGK-LLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIA 84 (251)
T ss_pred eeCC-EEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHH
Confidence 4453 5555555433 49999999999999999875 6678999998766 56776511 11011 1112223455
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCCHHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~A~~ 254 (286)
+.+.++|+|+.|.|.|+|||. .++++||++++.++|+|++...+. +.+.+|.. ++.+..+|+.
T Consensus 85 l~~~~kPvIaav~G~a~GgG~-~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a~e 163 (251)
T TIGR03189 85 MLDSPVPILVAVRGQCLGGGL-EVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAE 163 (251)
T ss_pred HHhCCCCEEEEecCeeeeHHH-HHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence 667899999999999999995 588899999999999988752221 22333332 4567789999
Q ss_pred HHHcCccceEeCchh
Q psy5220 255 LLKKGALDMIIDRRK 269 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e 269 (286)
+.+.|+||.|+++.+
T Consensus 164 A~~~Glv~~v~~~~~ 178 (251)
T TIGR03189 164 GARIGLANAVAEDPE 178 (251)
T ss_pred HHHCCCcceecCcHH
Confidence 999999999998653
No 87
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.43 E-value=5.9e-12 Score=113.96 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=109.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC-----CcchhhchH----h-H-HH-HHHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG-----GARMQEGLL----S-L-MQ-MAKTTAILTK 190 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg-----Ga~i~Eg~~----~-l-~~-~~~~~~a~~~ 190 (286)
.|+++..|..-..++++....+.+.++++.+. ..+.+|+|...| |+++.+-.. . . .. .......+.+
T Consensus 13 ~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~-~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (255)
T PRK07112 13 DVCFLQLHRPEAQNTINDRLIAECMDVLDRCE-HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHR 91 (255)
T ss_pred CEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh-cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 46666666554678999999999999999887 468999998755 567754100 0 0 00 1112234556
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCCHHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~A~~ 254 (286)
+...++|+|++|.|+|+|||. .++++||++||.++++|+++...+ +.+.+|.. ++.+..+|+.
T Consensus 92 l~~~~kPvIaav~G~a~GgG~-~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~a~e 170 (255)
T PRK07112 92 LATGPYVTIAHVRGKVNAGGI-GFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQQ 170 (255)
T ss_pred HHcCCCCEEEEEecEEEcchh-HHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCcccHHH
Confidence 677899999999999999996 578899999999999998863321 22223332 3466789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHh
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQ 282 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~ 282 (286)
++++|+||.|+++++. .+.++++.+.
T Consensus 171 A~~~Glv~~vv~~~~~--~~~~~a~~l~ 196 (255)
T PRK07112 171 AFSWGLVDAYGANSDT--LLRKHLLRLR 196 (255)
T ss_pred HHHcCCCceecCcHHH--HHHHHHHHHH
Confidence 9999999999987642 2344444443
No 88
>PRK08321 naphthoate synthase; Validated
Probab=99.42 E-value=6.3e-12 Score=116.54 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=118.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------------Ccchhhc------h--------
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------------GARMQEG------L-------- 175 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------------Ga~i~Eg------~-------- 175 (286)
.|+++..|..-..++++......+.++++.+. +..+.+|+|...| |+++.+. .
T Consensus 34 ~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 113 (302)
T PRK08321 34 GTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADT 113 (302)
T ss_pred CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccc
Confidence 46666666655779999999999999999874 6778999998643 4565431 0
Q ss_pred HhHHHHHHH--HHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEc-CCcEEEeeChhh-----------hhhhh
Q psy5220 176 LSLMQMAKT--TAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAE-PGALIGFAGPRV-----------IKNTV 241 (286)
Q Consensus 176 ~~l~~~~~~--~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~-~~A~i~~~gp~v-----------i~~~~ 241 (286)
......... ......+...++|+|++|.|.|+|||. .++++||++||. ++|+|++...++ +.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~-~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~v 192 (302)
T PRK08321 114 VDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGH-SLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQV 192 (302)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHH-HHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHh
Confidence 000001111 112334667899999999999999995 578899999998 689998763322 34444
Q ss_pred hcc------CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 242 KEK------LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 242 g~~------l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
|.. ++.+..+|+.+++.|+||.|++++++.+.+.++++.+...
T Consensus 193 G~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 241 (302)
T PRK08321 193 GQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGK 241 (302)
T ss_pred CHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhC
Confidence 543 4567789999999999999999999999999999888764
No 89
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.42 E-value=1.1e-11 Score=114.04 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=114.3
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHHh------CCCcEEEEEeC-C-----Ccchhhch--------HhHHHH-
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLE------QKIPFVCITAT-G-----GARMQEGL--------LSLMQM- 181 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~------~~iPlV~l~ds-g-----Ga~i~Eg~--------~~l~~~- 181 (286)
.|+++..++. ..++++....+.+.++++.+.+ ..+.+|+|... | |+++.+-. ..+...
T Consensus 26 ~ia~itl~p~-~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 104 (287)
T PRK08788 26 NVMWMYMRAQ-PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYA 104 (287)
T ss_pred CEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHH
Confidence 3666666643 5689999999999999998754 56889999876 3 45664410 001111
Q ss_pred HHHHHHHHHHh---cCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc---
Q psy5220 182 AKTTAILTKLS---KKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK--- 244 (286)
Q Consensus 182 ~~~~~a~~~l~---~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~--- 244 (286)
..++..+.++. ..++|+|+.|.|.|+|||. .++++||++|+.++|+|++...++ +...+|..
T Consensus 105 ~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~-~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ 183 (287)
T PRK08788 105 RACVDGVHAFHRGFGAGAISIALVQGDALGGGF-EAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAE 183 (287)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCeeehHHH-HHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHH
Confidence 11222222222 5799999999999999995 588899999999999988753221 33344432
Q ss_pred ---CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 245 ---LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 245 ---l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
++.+..+|+.+.++|+||.|++++++.+.+.++++.+..
T Consensus 184 ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~ 225 (287)
T PRK08788 184 ELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKR 225 (287)
T ss_pred HHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhc
Confidence 457778999999999999999998888888888887764
No 90
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.39 E-value=1.6e-11 Score=112.58 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=117.4
Q ss_pred eeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-------Ccchhhch---Hh---HHHHHHH-HH
Q psy5220 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-------GARMQEGL---LS---LMQMAKT-TA 186 (286)
Q Consensus 122 ~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-------Ga~i~Eg~---~~---l~~~~~~-~~ 186 (286)
-.|+++..|.. ..++++....+.+.++++... +..+.+|+|...| |+++.+-. .+ ...+... ..
T Consensus 20 ~~Va~itlnr~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 98 (278)
T PLN03214 20 GGIAVVWLAKE-PVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTT 98 (278)
T ss_pred CCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHH
Confidence 34666666654 459999999999999999875 6678999998754 35665410 00 1111111 12
Q ss_pred HHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh------------hhhhhhcc------CCCC
Q psy5220 187 ILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV------------IKNTVKEK------LPDG 248 (286)
Q Consensus 187 a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v------------i~~~~g~~------l~~~ 248 (286)
.+.++...++|+|++|.|.|+|||. .++++||++|+.++|+|++...++ +.+.+|.. ++.+
T Consensus 99 ~~~~l~~~~kPvIAaV~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~ 177 (278)
T PLN03214 99 FLVRLLRSRLATVCAIRGACPAGGC-AVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGR 177 (278)
T ss_pred HHHHHHcCCCCEEEEEcCcccchHH-HHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCC
Confidence 3456777899999999999999995 578899999999999888752221 23334432 4567
Q ss_pred CCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 249 FQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 249 ~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
..+|+++.+.|+||.|++++++.+.+.++++.+...
T Consensus 178 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 213 (278)
T PLN03214 178 LVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKL 213 (278)
T ss_pred ccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcC
Confidence 789999999999999999988888888888877653
No 91
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.36 E-value=2.7e-11 Score=113.75 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=110.1
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhch-------HhHHHHHHHH-
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGL-------LSLMQMAKTT- 185 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~-------~~l~~~~~~~- 185 (286)
|.-++++..|..-..++++..+...+..+++.+. +..+.+|+|..+| |+++.+-. ....++.+.+
T Consensus 35 ~~~~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~ 114 (360)
T TIGR03200 35 GLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFN 114 (360)
T ss_pred ceEEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHH
Confidence 4445555566555668999999999999999875 6789999998866 45664411 1111222222
Q ss_pred HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCC
Q psy5220 186 AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDG 248 (286)
Q Consensus 186 ~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~ 248 (286)
..+..+.+.++|+|++|.|.|+|||. .++++||++|+.++|+|+++.+++ +...+|.. ++.+
T Consensus 115 ~l~~~i~~~pKPVIAAVnG~AiGGGl-eLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe 193 (360)
T TIGR03200 115 DMVSAILGCDKPVICRVNGMRIGGGQ-EIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCE 193 (360)
T ss_pred HHHHHHHhCCCCEEEEECCEeeeHHH-HHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCC
Confidence 23456777899999999999999995 588899999999999999875543 33344432 4567
Q ss_pred CCCHHHHHHcCccceEeCchhH
Q psy5220 249 FQSSEFLLKKGALDMIIDRRKL 270 (286)
Q Consensus 249 ~~~A~~~~~~G~vD~Vv~~~e~ 270 (286)
..+|+.+.+.|+||.|+++.++
T Consensus 194 ~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 194 PWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred cCcHHHHHHcCChheecCchhc
Confidence 7899999999999999998775
No 92
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.36 E-value=2.4e-11 Score=110.20 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=112.5
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchH---h----HHH-HHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLL---S----LMQ-MAKTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~---~----l~~-~~~~~~a~ 188 (286)
.|+++..|..-..++++.+....+.++++.+. +..+.+|+|...| |+++.+-.. . ..+ ...+...+
T Consensus 15 ~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (260)
T PRK07827 15 GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALL 94 (260)
T ss_pred CEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHH
Confidence 46666666555679999999999999999875 6678999998876 457654110 0 011 12223345
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc-----CCCCCCCH
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK-----LPDGFQSS 252 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~-----l~~~~~~A 252 (286)
.++...++|+|++|.|+|+|||. .++++||++||.++|+|+++.... +....+.. ++.+..+|
T Consensus 95 ~~l~~~~kPvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~l~l~g~~~~a 173 (260)
T PRK07827 95 RAIVELPKPVIAAIDGHVRAGGF-GLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFGA 173 (260)
T ss_pred HHHHhCCCCEEEEEcCeeecchh-hHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHHHHHhCCccCH
Confidence 56777899999999999999996 578899999999999998863221 22221211 44667899
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
+.+++.|+||.|++ ++.+.+.++++.+.+
T Consensus 174 ~eA~~~Glv~~v~~--~l~~~a~~~a~~la~ 202 (260)
T PRK07827 174 AEAARIGLVTAAAD--DVDAAVAALLADLRR 202 (260)
T ss_pred HHHHHcCCcccchH--HHHHHHHHHHHHHHh
Confidence 99999999999974 466666666666654
No 93
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.35 E-value=2.8e-11 Score=114.09 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=110.1
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------CcchhhchH------hH-H-H-HH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEGLL------SL-M-Q-MA 182 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg~~------~l-~-~-~~ 182 (286)
++|. |+++..|.--..++++..+...+.++++.+. +..+.+|+|..+| |+++.+-.. .. . . +.
T Consensus 9 ~~~~-v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (342)
T PRK05617 9 VEGG-VGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFR 87 (342)
T ss_pred EECC-EEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHH
Confidence 3443 6666666555679999999999999999875 6678999998866 566644100 00 0 1 11
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc-----CC
Q psy5220 183 KTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK-----LP 246 (286)
Q Consensus 183 ~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~-----l~ 246 (286)
.....+..+...++|+|++|.|+|+|||. .++++||++||.++|+|++...++ +.+..|.. ++
T Consensus 88 ~~~~~~~~i~~~~kPvIAaVnG~a~GgG~-~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~lllt 166 (342)
T PRK05617 88 EEYRLNALIARYPKPYIALMDGIVMGGGV-GISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYLALT 166 (342)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEEccHh-HHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHHHHHc
Confidence 12223445667899999999999999996 588899999999999998864432 22222211 45
Q ss_pred CCCCCHHHHHHcCccceEeCchhHHHH
Q psy5220 247 DGFQSSEFLLKKGALDMIIDRRKLRFK 273 (286)
Q Consensus 247 ~~~~~A~~~~~~G~vD~Vv~~~e~~~~ 273 (286)
.+..+|+.+.+.|+||.|++++++.+.
T Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~ 193 (342)
T PRK05617 167 GARISAADALYAGLADHFVPSADLPAL 193 (342)
T ss_pred CCCCCHHHHHHcCCcceecCHHHHHHH
Confidence 677899999999999999999877665
No 94
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.35 E-value=5e-11 Score=102.74 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=113.6
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhh---chH-h--HHH-HHHHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQE---GLL-S--LMQ-MAKTTAILT 189 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~E---g~~-~--l~~-~~~~~~a~~ 189 (286)
.++++..+..-..++++....+.+.++++.+. +..+.+|+|..++ |.++.+ ... . ..+ .......+.
T Consensus 8 ~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (195)
T cd06558 8 GVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLR 87 (195)
T ss_pred CEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHH
Confidence 45666666555679999999999999999986 5678899998754 555533 000 0 111 122233445
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCCH
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQSS 252 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~A 252 (286)
.+.+.++|+|+++.|.|+|||+ .++++||++++.+++.+++..... +.+..|.. ++.+..++
T Consensus 88 ~i~~~~~p~Ia~v~G~a~g~G~-~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a 166 (195)
T cd06558 88 ALLRLPKPVIAAVNGAALGGGL-ELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISA 166 (195)
T ss_pred HHHcCCCCEEEEECCeeecHHH-HHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCH
Confidence 5667799999999999999996 477889999999999998765322 22222222 33556789
Q ss_pred HHHHHcCccceEeCchhHHHHHHHHHHH
Q psy5220 253 EFLLKKGALDMIIDRRKLRFKIANLLAL 280 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~e~~~~l~~~L~~ 280 (286)
+.+.+.|++|.+++++++.+.+.++.+.
T Consensus 167 ~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 167 EEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 9999999999999998888888877654
No 95
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.33 E-value=3.6e-11 Score=109.07 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=110.2
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-------HhHHH----HHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-------LSLMQ----MAKTT 185 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-------~~l~~----~~~~~ 185 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |+++.+-. ..+.. ....+
T Consensus 12 ~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T PRK07509 12 GIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLA 91 (262)
T ss_pred CEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHH
Confidence 36666666655779999999999999999875 6678999998766 55664310 00100 01111
Q ss_pred -HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCC
Q psy5220 186 -AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPD 247 (286)
Q Consensus 186 -~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~ 247 (286)
..+..+...++|+|++|.|+|+|||. .++++||++||.++++|+++.... +.+.+|.. ++.
T Consensus 92 ~~~~~~~~~~~kpvIaav~G~a~GgG~-~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg 170 (262)
T PRK07509 92 QRVSLGWRRLPVPVIAALEGVCFGGGL-QIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTA 170 (262)
T ss_pred HHHHHHHHhCCCCEEEEECCeeecchH-HHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcC
Confidence 12334567899999999999999996 578899999999999998864221 33334432 456
Q ss_pred CCCCHHHHHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 248 GFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 248 ~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
+..+|+.+.+.|+||.|+++ +.+.+.++++.+..
T Consensus 171 ~~~~a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~ 204 (262)
T PRK07509 171 RVFSAEEALELGLVTHVSDD--PLAAALALAREIAQ 204 (262)
T ss_pred CCcCHHHHHHcCChhhhhch--HHHHHHHHHHHHHh
Confidence 77899999999999999965 34444555554443
No 96
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.32 E-value=7.1e-11 Score=106.45 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=107.7
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----CcchhhchHh-HHHHHHH-HHHHHHHhcC
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGLLS-LMQMAKT-TAILTKLSKK 194 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~~~-l~~~~~~-~~a~~~l~~~ 194 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..+| |.++++-... ...+.+. ...+..+.+.
T Consensus 9 ~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (248)
T PRK06072 9 GYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFS 88 (248)
T ss_pred CEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 36666666655679999999999999999885 5668899998766 5676541110 0111111 1234456678
Q ss_pred CCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc-----CCCCCCCHHHHHHc
Q psy5220 195 KIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK-----LPDGFQSSEFLLKK 258 (286)
Q Consensus 195 ~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~-----l~~~~~~A~~~~~~ 258 (286)
++|+|++|.|+|+|||. .++++||++||.++++|++...+. +.+.+|.. ++.+..+|+.+++.
T Consensus 89 ~kPvIaav~G~a~GgG~-~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll~g~~~~a~eA~~~ 167 (248)
T PRK06072 89 DKIYISAINGVTAGACI-GIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEEAERW 167 (248)
T ss_pred CCCEEEEECCeeehHHH-HHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHHhCCccCHHHHHHC
Confidence 99999999999999996 578899999999999887753322 22333322 34666799999999
Q ss_pred CccceEeCchhHHHHHHHHHHHHhc
Q psy5220 259 GALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 259 G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
|+||.+ + ++.+.+.++.+.+..
T Consensus 168 Glv~~~-~--~~~~~a~~~a~~la~ 189 (248)
T PRK06072 168 GLLKIS-E--DPLSDAEEMANRISN 189 (248)
T ss_pred CCcccc-c--hHHHHHHHHHHHHHh
Confidence 999954 3 334444555555543
No 97
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.31 E-value=7.8e-11 Score=112.98 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=114.7
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHH-HhCCCcEEEEEeCC-----Ccchhhch-------H-hHHHH-HHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQIS-LEQKIPFVCITATG-----GARMQEGL-------L-SLMQM-AKTTAI 187 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A-~~~~iPlV~l~dsg-----Ga~i~Eg~-------~-~l~~~-~~~~~a 187 (286)
.|+++..|.--..++++..+...+.++++.+ .+..+.+|+|..+| |+++.+-. . ....+ ...+..
T Consensus 46 ~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l 125 (401)
T PLN02157 46 CSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSF 125 (401)
T ss_pred CEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHH
Confidence 4777777766677999999999999999886 57789999998766 56774310 0 01111 111222
Q ss_pred HHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc-----CCCCCCC
Q psy5220 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK-----LPDGFQS 251 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~-----l~~~~~~ 251 (286)
...+.+.++|+|++|.|.|+|||. .++++||++|++++++|+++...+ +.+..|.. ++.+..+
T Consensus 126 ~~~i~~~pkPvIA~v~G~a~GGG~-~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~i~ 204 (401)
T PLN02157 126 IYLLGTYLKPHVAILNGVTMGGGT-GVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLS 204 (401)
T ss_pred HHHHHhCCCCEEEEEeCeEeehhH-HHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHHHHHcCCcCC
Confidence 345677899999999999999995 588899999999999988763221 33333321 4567789
Q ss_pred HHHHHHcCccceEeCchhHHHHHHHHHHHHh
Q psy5220 252 SEFLLKKGALDMIIDRRKLRFKIANLLALLQ 282 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~ 282 (286)
|+.+.+.|++|.+|+++++ +.+.+++..+.
T Consensus 205 A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~ 234 (401)
T PLN02157 205 GAEMLACGLATHYIRSEEI-PVMEEQLKKLL 234 (401)
T ss_pred HHHHHHcCCceEEeCHhHH-HHHHHHHHHHH
Confidence 9999999999999999887 45556666554
No 98
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.30 E-value=6.9e-11 Score=121.22 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=119.7
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-------HhHHHHH-HHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-------LSLMQMA-KTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-------~~l~~~~-~~~~a~ 188 (286)
.|+++..|..-..++++..+...+.++++.+. +..+.+|+|..+| |+++++-. .....+. .....+
T Consensus 16 ~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (715)
T PRK11730 16 GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIF 95 (715)
T ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 36666666544679999999999999999874 6779999998866 56775411 0011111 112234
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCC
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQS 251 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~ 251 (286)
.++.+.++|+|++|.|+|+|||. .++++||++||.++|+|++....+ +.+.+|.. ++.+..+
T Consensus 96 ~~i~~~~kPvIAav~G~a~GgG~-~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~ 174 (715)
T PRK11730 96 NRLEDLPVPTVAAINGYALGGGC-ECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVR 174 (715)
T ss_pred HHHHcCCCCEEEEECCEeehHHH-HHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCC
Confidence 56677899999999999999995 688999999999999998863322 33344432 4567789
Q ss_pred HHHHHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 252 SEFLLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
|+.+++.|+||.|++++++.+...++++.+..
T Consensus 175 A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~ 206 (715)
T PRK11730 175 AEDALKVGAVDAVVAPEKLQEAALALLKQAIA 206 (715)
T ss_pred HHHHHHCCCCeEecCHHHHHHHHHHHHHHHhh
Confidence 99999999999999998888888888877664
No 99
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.29 E-value=8.3e-11 Score=112.29 Aligned_cols=152 Identities=10% Similarity=0.058 Sum_probs=108.8
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch------HhHHH-HHHHH
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL------LSLMQ-MAKTT 185 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~------~~l~~-~~~~~ 185 (286)
++|. |+++..|..-..++++..+.+.+.++++.+. +..+.+|+|..+| |+++.+-. ..... .....
T Consensus 17 ~~~~-v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 95 (379)
T PLN02874 17 EKGR-VRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMY 95 (379)
T ss_pred EECC-EEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHH
Confidence 3443 5666666555668999999999999999875 6779999998876 56765411 00011 11111
Q ss_pred HHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhc---c--CCCCC
Q psy5220 186 AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKE---K--LPDGF 249 (286)
Q Consensus 186 ~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~---~--l~~~~ 249 (286)
..+..+.+.++|+|++|.|.|+|||. .++++||++||.++|+|+++..++ +.+..|. . ++.+.
T Consensus 96 ~l~~~i~~~~kPvIAaV~G~a~GgG~-~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~~l~ltG~~ 174 (379)
T PLN02874 96 WLCYHIHTYKKTQVALVHGLVMGGGA-GLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGAR 174 (379)
T ss_pred HHHHHHHhCCCCEEEEecCeEEecHH-HHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHHHHHHcCCc
Confidence 22345667899999999999999995 588899999999999988763322 2232332 1 45677
Q ss_pred CCHHHHHHcCccceEeCchhHHH
Q psy5220 250 QSSEFLLKKGALDMIIDRRKLRF 272 (286)
Q Consensus 250 ~~A~~~~~~G~vD~Vv~~~e~~~ 272 (286)
.+|+.+++.|+||.||+++++.+
T Consensus 175 i~a~eA~~~GLv~~vv~~~~l~~ 197 (379)
T PLN02874 175 LNGKEMVACGLATHFVPSEKLPE 197 (379)
T ss_pred ccHHHHHHcCCccEEeCHHHHHH
Confidence 89999999999999999887765
No 100
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.28 E-value=2.6e-10 Score=102.39 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=108.4
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHh-CCC-cEEEEEeCC-----Ccchhhch------HhHHHH-HHHHHHHH
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLE-QKI-PFVCITATG-----GARMQEGL------LSLMQM-AKTTAILT 189 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~-~~i-PlV~l~dsg-----Ga~i~Eg~------~~l~~~-~~~~~a~~ 189 (286)
|+++..|..-. ++++....+.+.++++.+.+ ..+ .+|++.+.| |+++.+-. ....++ ..+...+.
T Consensus 10 v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (239)
T PLN02267 10 LFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVA 88 (239)
T ss_pred EEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 55555543322 78999999999999998764 444 477776654 67775411 001111 12222455
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEc-CCcEEEeeC-------hhh----hhhhhhc-----c--CCCCCC
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAE-PGALIGFAG-------PRV----IKNTVKE-----K--LPDGFQ 250 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~-~~A~i~~~g-------p~v----i~~~~g~-----~--l~~~~~ 250 (286)
++...++|+|++|.|+|+|||. .++++||+++|. +.+++++.. |.. +...+|. + ++.+..
T Consensus 89 ~l~~~~kPvIAaV~G~a~GgG~-~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~ 167 (239)
T PLN02267 89 DLISLPMPTIAAVTGHASAAGF-ILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKL 167 (239)
T ss_pred HHhcCCCCEEEEECCcchHHHH-HHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcC
Confidence 6777899999999999999996 588899999997 456776431 221 2222331 1 346678
Q ss_pred CHHHHHHcCccceEeCc-hhHHHHHHHHHHHHhc
Q psy5220 251 SSEFLLKKGALDMIIDR-RKLRFKIANLLALLQK 283 (286)
Q Consensus 251 ~A~~~~~~G~vD~Vv~~-~e~~~~l~~~L~~l~~ 283 (286)
+|+.+++.|+||.|+++ +++.+...++.+.+.+
T Consensus 168 ~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~ 201 (239)
T PLN02267 168 TAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAA 201 (239)
T ss_pred CHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhh
Confidence 89999999999999986 5788888888887765
No 101
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.27 E-value=8.3e-11 Score=101.74 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=95.4
Q ss_pred cCCChHHHHHHHHHHHHHHhCCCc-EEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEc---CCcchhhh
Q psy5220 136 GSMGSVVGERFIQGAQISLEQKIP-FVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLT---NPTMGGVS 211 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~~~~iP-lV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~---g~~~GGg~ 211 (286)
|.++...+..+.+.++.|.+.+.. |++..||+|..+.++. .++.+ +...++|+|+.+. |.|.|||+
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~-------~i~~~---l~~~~kPvia~v~~~~G~AasgG~ 77 (187)
T cd07020 8 GAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTR-------EIVQA---ILASPVPVVVYVYPSGARAASAGT 77 (187)
T ss_pred eEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHH-------HHHHH---HHhCCCCEEEEEecCCCCchhHHH
Confidence 667777889999999998776654 6666799998775432 23332 3346899999999 99999997
Q ss_pred hhccccccEEEEcCCcEEEeeChhh-------------------------hhhhhhcc--------CCCCCCCHHHHHHc
Q psy5220 212 ASFAFMGDIVIAEPGALIGFAGPRV-------------------------IKNTVKEK--------LPDGFQSSEFLLKK 258 (286)
Q Consensus 212 ~s~a~~~d~via~~~A~i~~~gp~v-------------------------i~~~~g~~--------l~~~~~~A~~~~~~ 258 (286)
. ++++||+++|.|+|+++..+|.. +.+.+|.. .++...+|+++.+.
T Consensus 78 ~-iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~ 156 (187)
T cd07020 78 Y-ILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKL 156 (187)
T ss_pred H-HHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHc
Confidence 5 77899999999999999976641 22233431 22556789999999
Q ss_pred CccceEeCch-hHHHH
Q psy5220 259 GALDMIIDRR-KLRFK 273 (286)
Q Consensus 259 G~vD~Vv~~~-e~~~~ 273 (286)
|+||.|++++ ++.+.
T Consensus 157 Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 157 GVIDLIAADLNELLKK 172 (187)
T ss_pred CCcccccCCHHHHHHH
Confidence 9999999986 55543
No 102
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.25 E-value=1.9e-10 Score=114.07 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=113.3
Q ss_pred cCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCC------Ccchhhc-h-H--hHHH-HHHHHHHHHHHhcCCCCEEEEE
Q psy5220 136 GSMGSVVGERFIQGAQISL--EQKIPFVCITATG------GARMQEG-L-L--SLMQ-MAKTTAILTKLSKKKIPFISVL 202 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsg------Ga~i~Eg-~-~--~l~~-~~~~~~a~~~l~~~~vP~Isvv 202 (286)
++++....+.+..+++.+. +..+.+|+|...| |+++.+. . . .... +....+.+.++...++|+|++|
T Consensus 293 Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 293 NWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 8999999999999999876 4889999999876 3465321 0 0 0111 1111123556777899999999
Q ss_pred -cCCcchhhhhhccccccEEEE-------cCCcEEEeeChhh-----------hhhhh-hc--------cCCCCCCCHHH
Q psy5220 203 -TNPTMGGVSASFAFMGDIVIA-------EPGALIGFAGPRV-----------IKNTV-KE--------KLPDGFQSSEF 254 (286)
Q Consensus 203 -~g~~~GGg~~s~a~~~d~via-------~~~A~i~~~gp~v-----------i~~~~-g~--------~l~~~~~~A~~ 254 (286)
.|.|+|||...++++||++|| .++|+|++...++ +.+.+ |. .++.+..+|++
T Consensus 373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~e 452 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEE 452 (546)
T ss_pred CCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHH
Confidence 899999995578999999999 8999998873322 44444 53 24567789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.|+|+.|++++++.+.+.++++.+.+.
T Consensus 453 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 482 (546)
T TIGR03222 453 AERLGLVTAAPDDIDWEDEIRIALEERASF 482 (546)
T ss_pred HHHcCCcccccCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888764
No 103
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.24 E-value=1.8e-10 Score=114.47 Aligned_cols=149 Identities=11% Similarity=0.022 Sum_probs=112.5
Q ss_pred cCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCC------Ccchhh--chH--hHHHH-HHHHHHHHHHhcCCCCEEEEE
Q psy5220 136 GSMGSVVGERFIQGAQISL--EQKIPFVCITATG------GARMQE--GLL--SLMQM-AKTTAILTKLSKKKIPFISVL 202 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsg------Ga~i~E--g~~--~l~~~-~~~~~a~~~l~~~~vP~Isvv 202 (286)
++++.++.+.+.++++.+. +..+.+|+|...| |+++.. ... ..... ......+.++.+.++|+|++|
T Consensus 297 Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 297 AWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 7999999999999999876 4789999998866 345421 000 00111 112223556777899999999
Q ss_pred c-CCcchhhhhhccccccEEEEc-------CCcEEEeeChhh-----------hhhh-hhcc--------CCCCCCCHHH
Q psy5220 203 T-NPTMGGVSASFAFMGDIVIAE-------PGALIGFAGPRV-----------IKNT-VKEK--------LPDGFQSSEF 254 (286)
Q Consensus 203 ~-g~~~GGg~~s~a~~~d~via~-------~~A~i~~~gp~v-----------i~~~-~g~~--------l~~~~~~A~~ 254 (286)
. |.|+|||...++++||++||. ++|+|+++..++ +.+. +|.. ++.+..+|+.
T Consensus 377 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e 456 (550)
T PRK08184 377 EPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADA 456 (550)
T ss_pred CCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH
Confidence 7 999999955789999999999 999988873322 4433 4543 3567789999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.|+|+.|++++++.+.+.++++.+.+.
T Consensus 457 A~~~GLv~~vv~~~~l~~~a~~~a~~ia~~ 486 (550)
T PRK08184 457 AEELGLVTAAPDDIDWEDEVRIALEERASL 486 (550)
T ss_pred HHHcCCcccccChHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999888764
No 104
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.21 E-value=4.4e-10 Score=107.31 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=111.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHH-HhCCCcEEEEEeCC-----CcchhhchHh-----H---HH-HHHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQIS-LEQKIPFVCITATG-----GARMQEGLLS-----L---MQ-MAKTTAI 187 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A-~~~~iPlV~l~dsg-----Ga~i~Eg~~~-----l---~~-~~~~~~a 187 (286)
.|+++..|..-..++++..+...+.++++.+ .+..+.+|+|.++| |+++.+-... . .. ....+..
T Consensus 18 ~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l 97 (381)
T PLN02988 18 SVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYML 97 (381)
T ss_pred CEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHH
Confidence 4666666665577999999999999999986 46779999998876 6677441100 0 00 1111122
Q ss_pred HHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhc---c--CCCCCCC
Q psy5220 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKE---K--LPDGFQS 251 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~---~--l~~~~~~ 251 (286)
...+...++|+|++|.|.|+|||. .++++||+++++++++|+++..+. +.+..|. . ++.+..+
T Consensus 98 ~~~i~~~pKPvIa~v~G~a~GGG~-~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~LTG~~i~ 176 (381)
T PLN02988 98 NYVMATYSKAQVSILNGIVMGGGA-GVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLD 176 (381)
T ss_pred HHHHHHCCCCEEEEecCeEeehhh-HHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 335667899999999999999995 578899999999999988752221 2333232 1 4567788
Q ss_pred HHHHHHcCccceEeCchhHHHHHHHHH
Q psy5220 252 SEFLLKKGALDMIIDRRKLRFKIANLL 278 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~~e~~~~l~~~L 278 (286)
|+.+.+.|++|++|+++++.+...++.
T Consensus 177 a~eA~~~GLv~~vv~~~~l~~~~~~la 203 (381)
T PLN02988 177 GAEMLACGLATHFVPSTRLTALEADLC 203 (381)
T ss_pred HHHHHHcCCceEecCHhHHHHHHHHHH
Confidence 999999999999999887776665554
No 105
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.17 E-value=8.3e-10 Score=113.23 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=117.1
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC-----Ccchhhch-------HhHHHHH-HHHHHH
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG-----GARMQEGL-------LSLMQMA-KTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg-----Ga~i~Eg~-------~~l~~~~-~~~~a~ 188 (286)
.|+++..|..-..++++....+.+.++++.+. +..+.+|+|..++ |+++.+-. .....+. .....+
T Consensus 16 gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (714)
T TIGR02437 16 GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIF 95 (714)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 36666666544779999999999999999874 6779999998765 66775411 0001111 112234
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc------CCCCCCC
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK------LPDGFQS 251 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~------l~~~~~~ 251 (286)
.++...++|+|++|.|.|+|||. .++++||+++|.++++|++...+. +.+.+|.. ++.+..+
T Consensus 96 ~~i~~~pkPvIAai~G~alGGGl-eLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~ 174 (714)
T TIGR02437 96 NKLEDLPVPTVAAINGIALGGGC-ECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENR 174 (714)
T ss_pred HHHHhCCCCEEEEECCeeecHHH-HHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCC
Confidence 56677899999999999999995 588899999999999998863221 33344432 4567789
Q ss_pred HHHHHHcCccceEeCchhHHHHHHHHHHHH
Q psy5220 252 SEFLLKKGALDMIIDRRKLRFKIANLLALL 281 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l 281 (286)
|+.+.+.|+||.|++++++.+...+++..+
T Consensus 175 A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~ 204 (714)
T TIGR02437 175 AEDALKVGAVDAVVTADKLGAAALQLLKDA 204 (714)
T ss_pred HHHHHHCCCCcEeeChhHHHHHHHHHHHHH
Confidence 999999999999999888888888877653
No 106
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.17 E-value=1.1e-09 Score=105.30 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=116.4
Q ss_pred CCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHH-HhCCCcEEEEEeCC-----Ccchhhc-------
Q psy5220 108 ETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQIS-LEQKIPFVCITATG-----GARMQEG------- 174 (286)
Q Consensus 108 ~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A-~~~~iPlV~l~dsg-----Ga~i~Eg------- 174 (286)
..+.|+.-. .| .++++..|.--.-++++..+...+.++++.. .+.++.+|+|..+| |+++.+-
T Consensus 40 ~~~~v~~e~---~~-~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~ 115 (407)
T PLN02851 40 LQDQVLVEG---RA-KSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115 (407)
T ss_pred CCCCeEEEE---EC-CEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhcccc
Confidence 455555322 23 3567777766677999999999999999987 46789999998866 5666331
Q ss_pred h-HhHHH-HHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhh
Q psy5220 175 L-LSLMQ-MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTV 241 (286)
Q Consensus 175 ~-~~l~~-~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~ 241 (286)
. ..... +.........+...++|+|++|.|.|+|||. .++++||++++++++.|+++.... +.+..
T Consensus 116 ~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~-gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~ 194 (407)
T PLN02851 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGA-GISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLP 194 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHH-HHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhc
Confidence 0 01111 1222223445567899999999999999995 577889999999999888763322 22222
Q ss_pred hc---c--CCCCCCCHHHHHHcCccceEeCchhHHHHHHHHHHHH
Q psy5220 242 KE---K--LPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALL 281 (286)
Q Consensus 242 g~---~--l~~~~~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l 281 (286)
|. . ++.+..+++.+.+.|++|++|+++++ +.+.+.|..+
T Consensus 195 g~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~ 238 (407)
T PLN02851 195 GYLGEYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKL 238 (407)
T ss_pred CHHHHHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhh
Confidence 22 1 55777899999999999999999876 4445555443
No 107
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.17 E-value=5.1e-10 Score=95.81 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=94.8
Q ss_pred ccCCChHHHHHHHHHHHHHH-hCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhh
Q psy5220 135 GGSMGSVVGERFIQGAQISL-EQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSA 212 (286)
Q Consensus 135 gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~ 212 (286)
++..+..+.+.+.+.++.+. +.++..|+| .+++|..+.+. ..+...+.++.+.++|+|+.+.|.+.|||+.
T Consensus 16 ~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~-------~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~ 88 (177)
T cd07014 16 SDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVASGGGNAASGGYW 88 (177)
T ss_pred cCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEECCchhHHHHH
Confidence 34444556778888888775 567887777 46767665431 1233345667678999999999999999964
Q ss_pred hccccccEEEEcCCcEEEeeChhhhhh-------------------hhhcc-------C-CCCCCCHHHHHHcCccceEe
Q psy5220 213 SFAFMGDIVIAEPGALIGFAGPRVIKN-------------------TVKEK-------L-PDGFQSSEFLLKKGALDMII 265 (286)
Q Consensus 213 s~a~~~d~via~~~A~i~~~gp~vi~~-------------------~~g~~-------l-~~~~~~A~~~~~~G~vD~Vv 265 (286)
++++||+++|.|++.+++.|...... ..|.. + .....+|+.+.+.|+||.|.
T Consensus 89 -la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~ 167 (177)
T cd07014 89 -ISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLG 167 (177)
T ss_pred -HHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCC
Confidence 77899999999999999998753111 11111 1 12346899999999999999
Q ss_pred CchhHHHHH
Q psy5220 266 DRRKLRFKI 274 (286)
Q Consensus 266 ~~~e~~~~l 274 (286)
+.+|+.+.|
T Consensus 168 ~~~e~~~~l 176 (177)
T cd07014 168 SFDDAVAKL 176 (177)
T ss_pred CHHHHHHHh
Confidence 988877654
No 108
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.16 E-value=8.8e-10 Score=113.06 Aligned_cols=157 Identities=12% Similarity=0.161 Sum_probs=113.8
Q ss_pred eEEEEEEcCc-ccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccchhhc--h--H-hHHHHHHH-HHHH
Q psy5220 123 PLVVAVFEFE-FMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARMQEG--L--L-SLMQMAKT-TAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~-~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i~Eg--~--~-~l~~~~~~-~~a~ 188 (286)
.|+++..|.. -..++++....+.+.++++.+. +..+.+|+|...+ |+++++- . . ....+... ...+
T Consensus 15 ~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 94 (708)
T PRK11154 15 NIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLF 94 (708)
T ss_pred CEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHH
Confidence 3666666654 4678999999999999999875 6678888887543 5677541 1 0 01111121 1234
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCc--EEEeeChhh-----------hhhhhhcc------CCCCC
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGA--LIGFAGPRV-----------IKNTVKEK------LPDGF 249 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A--~i~~~gp~v-----------i~~~~g~~------l~~~~ 249 (286)
.++.+.++|+|++|.|.|+|||. .++++||+++|.+++ +|+++...+ +.+.+|.. ++.+.
T Consensus 95 ~~i~~~~kPvIAaV~G~a~GgG~-~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~ 173 (708)
T PRK11154 95 AEIEALPIPVVAAIHGACLGGGL-ELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQ 173 (708)
T ss_pred HHHHhCCCCEEEEECCeeechHH-HHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCc
Confidence 56777899999999999999995 588899999999875 777653221 33344432 45677
Q ss_pred CCHHHHHHcCccceEeCchhHHHHHHHHHHH
Q psy5220 250 QSSEFLLKKGALDMIIDRRKLRFKIANLLAL 280 (286)
Q Consensus 250 ~~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~ 280 (286)
.+|+.+.+.|+||.|++++++.+...++++.
T Consensus 174 i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~ 204 (708)
T PRK11154 174 LRAKQALKLGLVDDVVPHSILLEVAVELAKK 204 (708)
T ss_pred CCHHHHHHCCCCcEecChHHHHHHHHHHHHh
Confidence 8999999999999999998888888888766
No 109
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.16 E-value=8.1e-10 Score=113.17 Aligned_cols=155 Identities=11% Similarity=0.165 Sum_probs=111.5
Q ss_pred EEEEEEcCc-ccccCCChHHHHHHHHHHHHHH-hCCCcEEEE-EeCC-----Ccchhhch-----HhHHHHH-HHHHHHH
Q psy5220 124 LVVAVFEFE-FMGGSMGSVVGERFIQGAQISL-EQKIPFVCI-TATG-----GARMQEGL-----LSLMQMA-KTTAILT 189 (286)
Q Consensus 124 v~v~a~d~~-~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l-~dsg-----Ga~i~Eg~-----~~l~~~~-~~~~a~~ 189 (286)
|+++..|.. -..++++..+.+.+.++++.+. +..+.+|+| .+.| |+++.+-. .....+. .....+.
T Consensus 11 Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (699)
T TIGR02440 11 IAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFA 90 (699)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHH
Confidence 566666654 4679999999999999999875 667777776 4443 66775510 1111111 1122345
Q ss_pred HHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCC--cEEEeeChhh-----------hhhhhhcc------CCCCCC
Q psy5220 190 KLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPG--ALIGFAGPRV-----------IKNTVKEK------LPDGFQ 250 (286)
Q Consensus 190 ~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~--A~i~~~gp~v-----------i~~~~g~~------l~~~~~ 250 (286)
.+.+.++|+|++|.|.|+|||. .++++||+++|.++ ++|++...++ +.+.+|.. ++.+..
T Consensus 91 ~l~~~~kPvIAaVnG~a~GgG~-~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~ 169 (699)
T TIGR02440 91 ELEALPIPVVAAIHGACLGGGL-ELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQL 169 (699)
T ss_pred HHHhCCCCEEEEECCEeecHHH-HHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcC
Confidence 6777899999999999999995 58889999999886 6777763222 33344432 456778
Q ss_pred CHHHHHHcCccceEeCchhHHHHHHHHHH
Q psy5220 251 SSEFLLKKGALDMIIDRRKLRFKIANLLA 279 (286)
Q Consensus 251 ~A~~~~~~G~vD~Vv~~~e~~~~l~~~L~ 279 (286)
+|+.+.+.|+||.|++++++.+...++++
T Consensus 170 ~a~eA~~~GLV~~vv~~~~l~~~a~~~A~ 198 (699)
T TIGR02440 170 RAKQALKLGLVDDVVPQSILLDTAVEMAL 198 (699)
T ss_pred CHHHHHhCCCCcEecChhHHHHHHHHHHH
Confidence 99999999999999999888888888776
No 110
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.15 E-value=3.1e-10 Score=98.62 Aligned_cols=155 Identities=15% Similarity=0.244 Sum_probs=111.9
Q ss_pred EEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeC--C------Cc--chh-h-chH-hHHHHHH--HHHHHHHH
Q psy5220 128 VFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITAT--G------GA--RMQ-E-GLL-SLMQMAK--TTAILTKL 191 (286)
Q Consensus 128 a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~ds--g------Ga--~i~-E-g~~-~l~~~~~--~~~a~~~l 191 (286)
+.|.--..+++.+.+...+.+++..|. +.++-+|+|+.. | |. ++. . +.. +-.+..+ +...-..+
T Consensus 33 tinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlI 112 (282)
T COG0447 33 TINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLI 112 (282)
T ss_pred EecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHH
Confidence 344444558899999999999999995 788999999964 2 11 110 0 100 0001111 11111234
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhccCC------CCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEKLP------DGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~l~------~~~~~A~~ 254 (286)
+..++|+|++|.|.+.|||- ++-+.||+.||.++|.|+.+||.| +.+.+|++-. ...-+|+.
T Consensus 113 R~~PKpViA~V~G~AiGGGh-vlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~e 191 (282)
T COG0447 113 RTMPKPVIAMVAGYAIGGGH-VLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEE 191 (282)
T ss_pred HhCCcceEEEEeeEeccCcc-EEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHH
Confidence 56799999999999999995 566789999999999999999998 6667777632 45578999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhc
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQK 283 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~ 283 (286)
++++|+|..|||-+++.+...+|.+.+..
T Consensus 192 al~MGlVN~Vvp~~~LE~e~v~W~~E~l~ 220 (282)
T COG0447 192 ALDMGLVNTVVPHADLEKETVQWAREMLA 220 (282)
T ss_pred HHhcCceeeeccHHHHHHHHHHHHHHHHh
Confidence 99999999999998887777777765543
No 111
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.14 E-value=1.6e-09 Score=107.65 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=107.5
Q ss_pred cccCCChHHHHHHHHHHHHHH--hCCCcEEEEEeC------CCcchhhchH-----h--HHH-HHHHHH-HHHHHhcCCC
Q psy5220 134 MGGSMGSVVGERFIQGAQISL--EQKIPFVCITAT------GGARMQEGLL-----S--LMQ-MAKTTA-ILTKLSKKKI 196 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~--~~~iPlV~l~ds------gGa~i~Eg~~-----~--l~~-~~~~~~-a~~~l~~~~v 196 (286)
..++++..+...+.++++.+. +..+.+|+|+.. .|+++++-.. . ... ...... ....+...++
T Consensus 41 k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pk 120 (546)
T TIGR03222 41 KLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGL 120 (546)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCC
Confidence 668999999999999999886 467999999853 3667754110 0 000 011111 1223456799
Q ss_pred CEEEEEcCCcchhhhhhccccccEEEEcCC--cEEEeeChh-h--------hh-----hhhhcc------CCCCCCCHHH
Q psy5220 197 PFISVLTNPTMGGVSASFAFMGDIVIAEPG--ALIGFAGPR-V--------IK-----NTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 197 P~Isvv~g~~~GGg~~s~a~~~d~via~~~--A~i~~~gp~-v--------i~-----~~~g~~------l~~~~~~A~~ 254 (286)
|+|++|.|+|+|||. .++++||++++.++ ++|+++.-+ + .. +.+|.. ++.+..+|+.
T Consensus 121 PvIAAVnG~a~GGG~-~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~e 199 (546)
T TIGR03222 121 KFLAAVNGTCAGGGY-ELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKR 199 (546)
T ss_pred CEEEEECCEeehHHH-HHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHH
Confidence 999999999999995 58889999999986 677765432 1 11 122221 3466788999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.++|+||.|++++++.+.+.++++.+...
T Consensus 200 A~~~GLV~~vv~~~~l~~~a~~lA~~la~~ 229 (546)
T TIGR03222 200 AKEWRLVDEVVKPSQFDAAIAERAAELAAQ 229 (546)
T ss_pred HHHcCCceEEeChHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999888888753
No 112
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.07 E-value=3.9e-09 Score=105.10 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=107.1
Q ss_pred cccCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCC------Ccchhhch-------HhHHH-HHHHHH-HHHHHhcCCC
Q psy5220 134 MGGSMGSVVGERFIQGAQISL--EQKIPFVCITATG------GARMQEGL-------LSLMQ-MAKTTA-ILTKLSKKKI 196 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsg------Ga~i~Eg~-------~~l~~-~~~~~~-a~~~l~~~~v 196 (286)
..++++..+...+.++++.+. +..+.+|+|...+ |+++++-. ..... +..... ....+...++
T Consensus 45 ~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pk 124 (550)
T PRK08184 45 KLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGL 124 (550)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999999986 5679999998643 56664310 00000 011111 1224556799
Q ss_pred CEEEEEcCCcchhhhhhccccccEEEEcCC--cEEEeeChh-h--------hhhh-----hhcc------CCCCCCCHHH
Q psy5220 197 PFISVLTNPTMGGVSASFAFMGDIVIAEPG--ALIGFAGPR-V--------IKNT-----VKEK------LPDGFQSSEF 254 (286)
Q Consensus 197 P~Isvv~g~~~GGg~~s~a~~~d~via~~~--A~i~~~gp~-v--------i~~~-----~g~~------l~~~~~~A~~ 254 (286)
|+|+.|.|+|+|||. .++++||++++.++ ++|++...+ . .... +|.. ++.+..+|++
T Consensus 125 PvIAAVnG~a~GGG~-~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~Aee 203 (550)
T PRK08184 125 KFIAAVNGTCAGGGY-ELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKR 203 (550)
T ss_pred CEEEEECCEeehHHH-HHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHH
Confidence 999999999999996 58889999999987 777765432 1 1111 2221 3466788999
Q ss_pred HHHcCccceEeCchhHHHHHHHHHHHHhcC
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLLALLQKK 284 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L~~l~~~ 284 (286)
+.+.|+||.|++++++.+.+.+++..+...
T Consensus 204 A~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 204 AVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred HHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998888887653
No 113
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=99.05 E-value=3.9e-10 Score=92.29 Aligned_cols=101 Identities=18% Similarity=0.065 Sum_probs=66.9
Q ss_pred hhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNT 106 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~ 106 (286)
+..+...-.+.+|. +|.....| ..++|+.|+++.++|+.||| .|.|+..+- .|.|
T Consensus 37 Le~k~~~l~~eiy~-~lt~w~~V-~~aRhp~Rp~~~dyI~~l~~--df~ElhGDR------~~~d--------------- 91 (145)
T PF03255_consen 37 LEEKLEKLRKEIYS-NLTPWQRV-QLARHPDRPTALDYIENLFD--DFIELHGDR------LFGD--------------- 91 (145)
T ss_dssp HHHHHHCCCCHHHH-T--HHHHH-HHHTBTTS--HHHHHHHH-E--EEEE----S------SS-----------------
T ss_pred HHHHHHHHHHhccC-CCCHHHHH-HHhhCCCCCCHHHHHHHHhC--cCeEecCCc------cCCc---------------
Confidence 33444444556665 56664444 45899999999999999999 599999852 4543
Q ss_pred CCCCcEEEEEEEEcCeeEEEEEEcCc--------ccccCCChHHHHHHHHHHHHHH
Q psy5220 107 NETDALIVIKGSIMNLPLVVAVFEFE--------FMGGSMGSVVGERFIQGAQISL 154 (286)
Q Consensus 107 ~~~~~vvtG~g~i~G~~v~v~a~d~~--------~~gGs~~~~~~~K~~r~~~~A~ 154 (286)
+.++|+|+|+++|+||.|++++.. ...|+..+.+.+|..|++++|+
T Consensus 92 --D~AivgG~a~~~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 92 --DPAIVGGIARFDGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp ---TTEEEEEEEETTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred --CccceeeeEEECCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 889999999999999999999874 3689999999999999999984
No 114
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.05 E-value=7e-09 Score=106.77 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=108.6
Q ss_pred eEEEEEEcCcc-cccCCChHHHHHHHHHHHHHH-hCCCcE-EEEEeCC-----Ccchhhch-----HhHHHHH-HHHHHH
Q psy5220 123 PLVVAVFEFEF-MGGSMGSVVGERFIQGAQISL-EQKIPF-VCITATG-----GARMQEGL-----LSLMQMA-KTTAIL 188 (286)
Q Consensus 123 ~v~v~a~d~~~-~gGs~~~~~~~K~~r~~~~A~-~~~iPl-V~l~dsg-----Ga~i~Eg~-----~~l~~~~-~~~~a~ 188 (286)
.|+++..|..- ..++++......+.++++.+. +..+.. |++++.| |+++.+-. .....+. .....+
T Consensus 22 gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~ 101 (737)
T TIGR02441 22 DVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMF 101 (737)
T ss_pred CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHH
Confidence 36666565443 469999999999999999885 556774 4566655 56775411 0111111 111234
Q ss_pred HHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCc--EEEeeChhh-----------hhhhhhcc------CCCCC
Q psy5220 189 TKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGA--LIGFAGPRV-----------IKNTVKEK------LPDGF 249 (286)
Q Consensus 189 ~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A--~i~~~gp~v-----------i~~~~g~~------l~~~~ 249 (286)
.++.+.++|+|++|.|.|+|||. .++++||++||.+++ +|+++...+ +.+.+|.. ++.+.
T Consensus 102 ~~i~~~~kPvIAav~G~a~GgG~-eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~ 180 (737)
T TIGR02441 102 ERIEKSQKPIVAAISGSCLGGGL-ELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKK 180 (737)
T ss_pred HHHHhCCCCEEEEECCEeecHHH-HHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCc
Confidence 56667899999999999999996 588999999999884 676652211 33344432 45677
Q ss_pred CCHHHHHHcCccceEeCc-------------hhHHHHHHHHHHHH
Q psy5220 250 QSSEFLLKKGALDMIIDR-------------RKLRFKIANLLALL 281 (286)
Q Consensus 250 ~~A~~~~~~G~vD~Vv~~-------------~e~~~~l~~~L~~l 281 (286)
.+|+.+++.|+||.|+++ +++++...++...+
T Consensus 181 i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l 225 (737)
T TIGR02441 181 IRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGL 225 (737)
T ss_pred CCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHh
Confidence 899999999999999987 44666666666554
No 115
>KOG0368|consensus
Probab=98.98 E-value=1e-09 Score=115.16 Aligned_cols=173 Identities=18% Similarity=0.270 Sum_probs=138.7
Q ss_pred CCcEEEEEEEE------cCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch--hhchHh---
Q psy5220 109 TDALIVIKGSI------MNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM--QEGLLS--- 177 (286)
Q Consensus 109 ~~~vvtG~g~i------~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i--~Eg~~~--- 177 (286)
..|+|.-.-++ +||.+.|++||-||.-||+|+..-+-+.++-++|++.+||-|+|....|||+ .|.+..
T Consensus 1527 ~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlAeei~~lfk 1606 (2196)
T KOG0368|consen 1527 SCGMVAWKLTVKTPEYPEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLAEEIKPLFK 1606 (2196)
T ss_pred cceeEEEEEEecCCCCCCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccHHHHHHHhe
Confidence 55666555554 6999999999999999999999999999999999999999999999888876 221110
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHhcCCCC
Q psy5220 178 ------------------------------------------------------------LMQMAKTTAILTKLSKKKIP 197 (286)
Q Consensus 178 ------------------------------------------------------------l~~~~~~~~a~~~l~~~~vP 197 (286)
|++.+-+.-+-.+ +=..+|
T Consensus 1607 Vaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGVEnL~GSGlIAGetSr-AY~ei~ 1685 (2196)
T KOG0368|consen 1607 VAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGVENLRGSGLIAGETSR-AYNEIF 1685 (2196)
T ss_pred eeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccceeccccccccchhhh-hhhccc
Confidence 1111111111111 114789
Q ss_pred EEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhhhhhhhhccCC---CCCCCHHHHHHcCccceEeCch-hHHHH
Q psy5220 198 FISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLP---DGFQSSEFLLKKGALDMIIDRR-KLRFK 273 (286)
Q Consensus 198 ~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~~~~g~~l~---~~~~~A~~~~~~G~vD~Vv~~~-e~~~~ 273 (286)
+|+.|||.+.|-|+| ++=.+..+|-.+++.|-++|...+...+|+++- -.+++.+.+..+|+.+..|.++ +-..+
T Consensus 1686 T~t~VT~RsVGIGAY-lvRLgqR~IQve~~~iILTGa~ALNklLGreVYTSN~QLGG~qIM~~NGVsHlTv~dDleGV~k 1764 (2196)
T KOG0368|consen 1686 TITLVTGRSVGIGAY-LARLGQRIIQVEDQHIILTGASALNKLLGREVYTSNNQLGGPQIMHRNGVSHLTVSDDLEGVAK 1764 (2196)
T ss_pred eEEEEecceeeHHHH-HHHHHHHHHHhcCCceEEeCHHHHHHHhcccccccccccCCeEEeccCCceEEEecccHHHHHH
Confidence 999999999999987 444577888899999999999999999998853 4678999999999999999998 99999
Q ss_pred HHHHHHHHhc
Q psy5220 274 IANLLALLQK 283 (286)
Q Consensus 274 l~~~L~~l~~ 283 (286)
+..|++|+|.
T Consensus 1765 i~~WlSY~Pa 1774 (2196)
T KOG0368|consen 1765 ILNWLSYLPA 1774 (2196)
T ss_pred HHHHHHhCCc
Confidence 9999999986
No 116
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.96 E-value=1.5e-08 Score=87.06 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=92.9
Q ss_pred cCCChHHHHHHHHHHHHHHhCCC-cEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhc
Q psy5220 136 GSMGSVVGERFIQGAQISLEQKI-PFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASF 214 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~~~~i-PlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~ 214 (286)
|.+++....-+.|.++.|.+.+. .||+..||+|.....+ ..+.. .+.+.++|+|+.|.|.+.|+|++ +
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~~-------~~I~~---~l~~~~~pvva~V~g~AaSaG~~-i 76 (178)
T cd07021 8 GEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDSA-------LEIVD---LILNSPIPTIAYVNDRAASAGAL-I 76 (178)
T ss_pred eEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHHH-------HHHHH---HHHhCCCCEEEEECCchHHHHHH-H
Confidence 78888889999999999987775 4666689999776332 23333 34456899999999999999975 6
Q ss_pred cccccEEEEcCCcEEEeeChhhh---------------------hhhhhcc-------CCCC--------------CCCH
Q psy5220 215 AFMGDIVIAEPGALIGFAGPRVI---------------------KNTVKEK-------LPDG--------------FQSS 252 (286)
Q Consensus 215 a~~~d~via~~~A~i~~~gp~vi---------------------~~~~g~~-------l~~~--------------~~~A 252 (286)
+++||+++|.|++.++..||-.. .+..|+. +.++ ..++
T Consensus 77 a~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta 156 (178)
T cd07021 77 ALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTA 156 (178)
T ss_pred HHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCH
Confidence 78999999999999999888421 0011221 2222 3789
Q ss_pred HHHHHcCccceEeCch-hHH
Q psy5220 253 EFLLKKGALDMIIDRR-KLR 271 (286)
Q Consensus 253 ~~~~~~G~vD~Vv~~~-e~~ 271 (286)
+++++.|++|.++++. |+.
T Consensus 157 ~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 157 DEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHHHhCCeEEEECCHHHHh
Confidence 9999999999999874 543
No 117
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.79 E-value=3.9e-08 Score=82.73 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=84.9
Q ss_pred ccCCCh---HHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhh
Q psy5220 135 GGSMGS---VVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVS 211 (286)
Q Consensus 135 gGs~~~---~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~ 211 (286)
.|.++. ..+..+.+.++.+... -|+++..+|+|..+..+ -.+...+ ...++|+++++.|.|.|+|+
T Consensus 6 ~g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~~-------~~i~~~i---~~~~~pvi~~v~g~a~s~g~ 74 (160)
T cd07016 6 YGDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPGGDVFAG-------LAIYNAL---KRHKGKVTVKIDGLAASAAS 74 (160)
T ss_pred EeEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCCCCHHHH-------HHHHHHH---HhcCCCEEEEEcchHHhHHH
Confidence 355666 6788888888877555 79999999999876443 2233333 34589999999999999997
Q ss_pred hhccccccEEEEcCCcEEEeeChhhhh--------------------------hhhhcc-------CC-CCCCCHHHHHH
Q psy5220 212 ASFAFMGDIVIAEPGALIGFAGPRVIK--------------------------NTVKEK-------LP-DGFQSSEFLLK 257 (286)
Q Consensus 212 ~s~a~~~d~via~~~A~i~~~gp~vi~--------------------------~~~g~~-------l~-~~~~~A~~~~~ 257 (286)
. ++++||.++|.|++.|++..|.... ..+|.. +. +.+.+|+++.+
T Consensus 75 ~-ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~ 153 (160)
T cd07016 75 V-IAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVE 153 (160)
T ss_pred H-HHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHH
Confidence 5 6678999999999999888765411 112211 12 23568899999
Q ss_pred cCccceE
Q psy5220 258 KGALDMI 264 (286)
Q Consensus 258 ~G~vD~V 264 (286)
.|+||.|
T Consensus 154 ~GliD~v 160 (160)
T cd07016 154 LGFADEI 160 (160)
T ss_pred cCCCCcC
Confidence 9999875
No 118
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.75 E-value=2.2e-07 Score=79.41 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=93.0
Q ss_pred cCCChHHHHHHHHHHHHHHhCCC-cEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEc---CCcchhhh
Q psy5220 136 GSMGSVVGERFIQGAQISLEQKI-PFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLT---NPTMGGVS 211 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~~~~i-PlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~---g~~~GGg~ 211 (286)
|.+++....-+.|.++.|.+.+. +|++..||+|..+..+ ..+... +...++|+++.+. |.+.++|+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~-------~~I~~~---i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAA-------GNIVQR---IQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHH-------HHHHHH---HHhcCcCEEEEEecCCCeehhHHH
Confidence 78888889999999999977664 6778899999877543 223332 3346899999999 89988887
Q ss_pred hhccccccEEEEcCCcEEEeeChhh-hhh------------------------hhhcc-------CC-CCCCCHHHHHHc
Q psy5220 212 ASFAFMGDIVIAEPGALIGFAGPRV-IKN------------------------TVKEK-------LP-DGFQSSEFLLKK 258 (286)
Q Consensus 212 ~s~a~~~d~via~~~A~i~~~gp~v-i~~------------------------~~g~~-------l~-~~~~~A~~~~~~ 258 (286)
+ .++++|.++|.|++.++..+|-. ... .+|+. +. .-..+|+++++.
T Consensus 78 ~-I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~ 156 (172)
T cd07015 78 Y-IALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKY 156 (172)
T ss_pred H-HHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHc
Confidence 6 56789999999999999999832 100 11222 11 235789999999
Q ss_pred CccceEeCch-hHH
Q psy5220 259 GALDMIIDRR-KLR 271 (286)
Q Consensus 259 G~vD~Vv~~~-e~~ 271 (286)
|++|.|+.+. |+.
T Consensus 157 G~iD~ia~~~~~ll 170 (172)
T cd07015 157 GVIEVVARDINELL 170 (172)
T ss_pred CCceeeeCCHHHHh
Confidence 9999999885 543
No 119
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.72 E-value=2.1e-07 Score=81.64 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=70.3
Q ss_pred cCCC---hHHHHHHHHHHHHHH-hCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 136 GSMG---SVVGERFIQGAQISL-EQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 136 Gs~~---~~~~~K~~r~~~~A~-~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
|.++ ..+.+.+.+.++.+. +.++..|+| .+|+|..+... ..+...+..+++.++|+|+.+.|.|.|+|
T Consensus 9 g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~g~~~s~g 81 (208)
T cd07023 9 GTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMGDVAASGG 81 (208)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEECCcchhHH
Confidence 4554 678888999999874 566877776 67888777432 12333456666779999999999999988
Q ss_pred hhhccccccEEEEcCCcEEEeeChhh
Q psy5220 211 SASFAFMGDIVIAEPGALIGFAGPRV 236 (286)
Q Consensus 211 ~~s~a~~~d~via~~~A~i~~~gp~v 236 (286)
+. ++++||.++|.|++.++..|...
T Consensus 82 ~~-lA~aaD~i~a~~~s~~g~iG~~~ 106 (208)
T cd07023 82 YY-IAAAADKIVANPTTITGSIGVIG 106 (208)
T ss_pred HH-HHhhCCEEEECCCCeEEeCcEEE
Confidence 64 67899999999999998776543
No 120
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.70 E-value=3.6e-07 Score=80.61 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=69.1
Q ss_pred cCCChHHHHHHHHHHHHHH-hCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhh
Q psy5220 136 GSMGSVVGERFIQGAQISL-EQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSAS 213 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~-~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s 213 (286)
..++..+...+.+.++.+. +.++..|+| .+++|.... +...+..++..+++ ++|+|+.+.|.+.|||++
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~-------~~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~- 90 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVA-------GVFELADAIRAARA-GKPIVAFVNGLAASAAYW- 90 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHH-------HHHHHHHHHHHHhc-CCCEEEEECCchhhHHHH-
Confidence 3456677888899999874 667888887 577775432 22345556677766 899999999999999965
Q ss_pred ccccccEEEEcCCcEEEeeChh
Q psy5220 214 FAFMGDIVIAEPGALIGFAGPR 235 (286)
Q Consensus 214 ~a~~~d~via~~~A~i~~~gp~ 235 (286)
++++||.++|.|+|.++..|.-
T Consensus 91 lA~~aD~i~a~~~a~~g~iG~~ 112 (214)
T cd07022 91 IASAADRIVVTPTAGVGSIGVV 112 (214)
T ss_pred HHhcCCEEEEcCCCeEEeeeEE
Confidence 7788999999999998777553
No 121
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.61 E-value=3e-07 Score=77.17 Aligned_cols=92 Identities=17% Similarity=0.303 Sum_probs=68.6
Q ss_pred cccCCChHHHHHHHHHHHHHHh-CCCc-EEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhh
Q psy5220 134 MGGSMGSVVGERFIQGAQISLE-QKIP-FVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVS 211 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~~-~~iP-lV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~ 211 (286)
+.|.+++.+.+.+.+.++.+.+ .++. ||+-.+|+|..+..+ ..+..++..+ ++|+|+.+.|.+.++++
T Consensus 4 i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~-------~~i~~~l~~~---~kpvva~~~g~~~s~g~ 73 (161)
T cd00394 4 INGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAG-------MNIVDALQAS---RKPVIAYVGGQAASAGY 73 (161)
T ss_pred EEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHH-------HHHHHHHHHh---CCCEEEEECChhHHHHH
Confidence 3477778888999999998864 4455 444478888765332 2343444443 58999999999999986
Q ss_pred hhccccccEEEEcCCcEEEeeChhh
Q psy5220 212 ASFAFMGDIVIAEPGALIGFAGPRV 236 (286)
Q Consensus 212 ~s~a~~~d~via~~~A~i~~~gp~v 236 (286)
+ ++++||.+++.|++.+++.||..
T Consensus 74 ~-la~~~d~~~~~~~a~~~~~g~~~ 97 (161)
T cd00394 74 Y-IATAANKIVMAPGTRVGSHGPIG 97 (161)
T ss_pred H-HHhCCCEEEECCCCEEEEeeeEE
Confidence 5 67889999999999999987753
No 122
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.61 E-value=9.1e-07 Score=77.71 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHH-hCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccc
Q psy5220 141 VVGERFIQGAQISL-EQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMG 218 (286)
Q Consensus 141 ~~~~K~~r~~~~A~-~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~ 218 (286)
.+.+.+.+.++.+. +.++..|+| .+|+|..+.. ..++..++..++ .++|+|+.+.|.+.|+|++ ++++|
T Consensus 13 ~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~-------~~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~-la~aa 83 (207)
T TIGR00706 13 VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVA-------SEEIYEKLKKLK-AKKPVVASMGGVAASGGYY-IAMAA 83 (207)
T ss_pred cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHH-------HHHHHHHHHHhc-CCCCEEEEECCccchHHHH-HHhcC
Confidence 34567788888775 456655555 7788866532 234445566664 4799999999999998864 77889
Q ss_pred cEEEEcCCcEEEeeChh
Q psy5220 219 DIVIAEPGALIGFAGPR 235 (286)
Q Consensus 219 d~via~~~A~i~~~gp~ 235 (286)
|.++|.|++.++..|+.
T Consensus 84 D~i~a~p~a~vg~iGv~ 100 (207)
T TIGR00706 84 DEIVANPGTITGSIGVI 100 (207)
T ss_pred CEEEECCCCeEEeeeEE
Confidence 99999999998876654
No 123
>KOG0016|consensus
Probab=98.57 E-value=2.7e-06 Score=76.12 Aligned_cols=147 Identities=11% Similarity=0.146 Sum_probs=96.6
Q ss_pred cCcccccCCChHHHHHHHHHHHHHHhCC-CcEEEEEeCC-----Ccchhh------c---hHhHHH--HHHH-HHHHHHH
Q psy5220 130 EFEFMGGSMGSVVGERFIQGAQISLEQK-IPFVCITATG-----GARMQE------G---LLSLMQ--MAKT-TAILTKL 191 (286)
Q Consensus 130 d~~~~gGs~~~~~~~K~~r~~~~A~~~~-iPlV~l~dsg-----Ga~i~E------g---~~~l~~--~~~~-~~a~~~l 191 (286)
++. .-.++..+....+.++.+.|.+.+ +=+++++.+| |.+... + ..+.+. ..+. ...+..+
T Consensus 25 ~Pk-k~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~f 103 (266)
T KOG0016|consen 25 RPK-KKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTF 103 (266)
T ss_pred CCc-ccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHH
Confidence 443 448999999999999999986544 5566666665 433311 0 011110 1111 1135667
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEee------Chhh-----hhhhhhcc------CCCCCCCHHH
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFA------GPRV-----IKNTVKEK------LPDGFQSSEF 254 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~------gp~v-----i~~~~g~~------l~~~~~~A~~ 254 (286)
...+.|.|+.|.||++|-|+..+++ ||+|+|.+.+.+-.. .|++ .++..|.. +-.+..+|.+
T Consensus 104 i~f~Kplia~vNGPAIGlgasil~l-cD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~E 182 (266)
T KOG0016|consen 104 INFPKPLVALVNGPAIGLGASILPL-CDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQE 182 (266)
T ss_pred hcCCCCEEEEecCCccchhhHHhhh-hheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHH
Confidence 7889999999999999999766675 899999888776544 3444 33334433 2245578999
Q ss_pred HHHcCccceEeCchhHHHHHHHHH
Q psy5220 255 LLKKGALDMIIDRRKLRFKIANLL 278 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e~~~~l~~~L 278 (286)
+++.|+|+.|.+.+...+.+..-+
T Consensus 183 a~~~glVskif~~~tf~~~v~~~i 206 (266)
T KOG0016|consen 183 ACEKGLVSKIFPAETFNEEVLKKI 206 (266)
T ss_pred HHhcCchhhhcChHHHHHHHHHHH
Confidence 999999999999864444433333
No 124
>KOG1682|consensus
Probab=98.55 E-value=9.9e-07 Score=76.39 Aligned_cols=160 Identities=15% Similarity=0.171 Sum_probs=107.7
Q ss_pred cCeeEEEEEEcCcccccCCChHHHHHHHH-HHHHHHhCCCcEEEEEeCC-----Ccchhh-----chHhHHH-HHHHHHH
Q psy5220 120 MNLPLVVAVFEFEFMGGSMGSVVGERFIQ-GAQISLEQKIPFVCITATG-----GARMQE-----GLLSLMQ-MAKTTAI 187 (286)
Q Consensus 120 ~G~~v~v~a~d~~~~gGs~~~~~~~K~~r-~~~~A~~~~iPlV~l~dsg-----Ga~i~E-----g~~~l~~-~~~~~~a 187 (286)
+|.+=.++-++.+. +++..++...+.. +....+...+..|++...| |..+.| |...-.. +......
T Consensus 40 ~gvR~i~l~npKk~--NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dv 117 (287)
T KOG1682|consen 40 NGVREITLNNPKKL--NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDV 117 (287)
T ss_pred cceeeeeecCcccc--chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHH
Confidence 45554455555543 4555555444433 3333556778999998765 667755 2111000 1223334
Q ss_pred HHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh----------hhhhhhcc------CCCCCCC
Q psy5220 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV----------IKNTVKEK------LPDGFQS 251 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v----------i~~~~g~~------l~~~~~~ 251 (286)
+..+++.+||+|+-|.|.+...|.-..+ +||++++..++.|...|..+ +.+++.++ ++....+
T Consensus 118 mn~Irn~pVPVia~VNG~AaAAGcQLVa-SCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 118 MNDIRNLPVPVIAKVNGYAAAAGCQLVA-SCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred HHHHhcCCCceEEEecchhhhccceEEE-eeeEEEEecCccccCCCCceeeEecCcchhHhhhcchhHHHHHHHhCCCCc
Confidence 5667888999999999999998865444 79999999999888876654 33333333 3466789
Q ss_pred HHHHHHcCccceEeCchhHHHHHHHHHHHHh
Q psy5220 252 SEFLLKKGALDMIIDRRKLRFKIANLLALLQ 282 (286)
Q Consensus 252 A~~~~~~G~vD~Vv~~~e~~~~l~~~L~~l~ 282 (286)
++.++.+|++..|||.+|+...+.++.+.+.
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~ 227 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIK 227 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988888776553
No 125
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.54 E-value=2.1e-06 Score=75.56 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHH-hCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcccccc
Q psy5220 142 VGERFIQGAQISL-EQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGD 219 (286)
Q Consensus 142 ~~~K~~r~~~~A~-~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d 219 (286)
+.+.+.+.++.+. +.++..|+| .+|+|.++.+. ..+..++..+++.++|+|+.+.|.+.|+|++ ++++||
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~-------~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~-la~~aD 93 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVVSAGGAAASGGYW-ISTPAN 93 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEECCeehhHHHH-HHHhCC
Confidence 4577888888874 557887777 67888887442 1223345566677999999999999999865 788999
Q ss_pred EEEEcCCcEEEeeCh
Q psy5220 220 IVIAEPGALIGFAGP 234 (286)
Q Consensus 220 ~via~~~A~i~~~gp 234 (286)
.++|.|++.++..|.
T Consensus 94 ~i~a~~~a~~gsiGv 108 (211)
T cd07019 94 YIVANPSTLTGSIGI 108 (211)
T ss_pred EEEEcCCCEEEEeEE
Confidence 999999998877663
No 126
>KOG1679|consensus
Probab=98.52 E-value=6.2e-07 Score=78.21 Aligned_cols=147 Identities=15% Similarity=0.240 Sum_probs=103.5
Q ss_pred EEcCee--EEEEEEcCcccccCCChHHHHHHHHHHHHH-HhCCCcEEEEEe-CC-----Ccchhh--chHh------HHH
Q psy5220 118 SIMNLP--LVVAVFEFEFMGGSMGSVVGERFIQGAQIS-LEQKIPFVCITA-TG-----GARMQE--GLLS------LMQ 180 (286)
Q Consensus 118 ~i~G~~--v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A-~~~~iPlV~l~d-sg-----Ga~i~E--g~~~------l~~ 180 (286)
++.|.. +.++.+|.....+|++....+.+..+++.- .+.+..+|+|.. ++ |++++| .+.. ...
T Consensus 33 ~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~ 112 (291)
T KOG1679|consen 33 RLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNG 112 (291)
T ss_pred eccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHH
Confidence 455554 445666777778999999999999998876 467788888854 33 678866 2211 122
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChh-----------hhhhhhhccC----
Q psy5220 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR-----------VIKNTVKEKL---- 245 (286)
Q Consensus 181 ~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~-----------vi~~~~g~~l---- 245 (286)
...++. .+.+.++|+|+.|.|.+.|||. .+|+.||+.++..+|.||+.... -+++.+|..+
T Consensus 113 lR~~~~---dIe~Lp~P~IAAidG~ALGGGL-ElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKEL 188 (291)
T KOG1679|consen 113 LRGLFN---DIERLPQPVIAAIDGAALGGGL-ELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKEL 188 (291)
T ss_pred HHHHHH---HHHhCCccceehhcchhcccch-hhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhH
Confidence 333333 4445699999999999999995 68899999999999999886332 2444444433
Q ss_pred --CCCCCCHHHHHHcCccceEeCch
Q psy5220 246 --PDGFQSSEFLLKKGALDMIIDRR 268 (286)
Q Consensus 246 --~~~~~~A~~~~~~G~vD~Vv~~~ 268 (286)
+.+.....++...|+|.+||...
T Consensus 189 Iftarvl~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 189 IFTARVLNGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred hhhheeccchhHHhcchHHHHHhcC
Confidence 23445566777899999999764
No 127
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.40 E-value=2.5e-06 Score=75.67 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=66.4
Q ss_pred cCCChHHHHHHHHHHHHHH-hCCCcEEEEE-eCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhh
Q psy5220 136 GSMGSVVGERFIQGAQISL-EQKIPFVCIT-ATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSAS 213 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~-~~~iPlV~l~-dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s 213 (286)
+..+..+.+.+.+.++.|. +.++..|+|. +++|+.. .+...+..++.++++.++|+|+.+.+ +.+|++ .
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~-------~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy-~ 94 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGL-------AKLEELRQALERFRASGKPVIAYADG-YSQGQY-Y 94 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCH-------HHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhh-h
Confidence 3345667788889999875 6678888884 6777632 11233445566676678999999997 556664 4
Q ss_pred ccccccEEEEcCCcEEEeeChh
Q psy5220 214 FAFMGDIVIAEPGALIGFAGPR 235 (286)
Q Consensus 214 ~a~~~d~via~~~A~i~~~gp~ 235 (286)
++++||.++|.|++.+++.|..
T Consensus 95 lasaad~I~a~p~~~vg~iGv~ 116 (222)
T cd07018 95 LASAADEIYLNPSGSVELTGLS 116 (222)
T ss_pred hhhhCCEEEECCCceEEeeccc
Confidence 7788999999999999998764
No 128
>KOG1681|consensus
Probab=98.38 E-value=2e-06 Score=75.73 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=112.4
Q ss_pred EEEcCcccccCCChHHHHHHHHHHHH-HHhCCCcEEEEEeCC-----Ccch---------h-hchH------hHHH-HHH
Q psy5220 127 AVFEFEFMGGSMGSVVGERFIQGAQI-SLEQKIPFVCITATG-----GARM---------Q-EGLL------SLMQ-MAK 183 (286)
Q Consensus 127 ~a~d~~~~gGs~~~~~~~K~~r~~~~-A~~~~iPlV~l~dsg-----Ga~i---------~-Eg~~------~l~~-~~~ 183 (286)
+-.+.--.-+++..+..+.+-..++. +.+..+.+|+|.+.| |.++ | ||.. ++.. +..
T Consensus 35 v~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~ 114 (292)
T KOG1681|consen 35 VQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKR 114 (292)
T ss_pred EEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchHhhhhHHHHHHHHH
Confidence 33344445688999999999998885 678889999999887 5442 1 1211 1111 122
Q ss_pred HHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh-----------hhhhhhcc-------C
Q psy5220 184 TTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV-----------IKNTVKEK-------L 245 (286)
Q Consensus 184 ~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v-----------i~~~~g~~-------l 245 (286)
+-..+..+.+++.|+|+.|.|.|.|||. -+..+||++++.++|.|.+-.-.+ ++.++|.. +
T Consensus 115 ~Q~~~t~ie~CpKPVIaavHg~CiGagv-DLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elaf 193 (292)
T KOG1681|consen 115 YQDTFTAIERCPKPVIAAVHGACIGAGV-DLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAF 193 (292)
T ss_pred HHHHHHHHHhCChhHHHHHHhhhccccc-cceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHh
Confidence 2234556677899999999999999995 356689999999999888764332 44455532 3
Q ss_pred CCCCCCHHHHHHcCccceEeCch-hHHHHHHHHHHHHhc
Q psy5220 246 PDGFQSSEFLLKKGALDMIIDRR-KLRFKIANLLALLQK 283 (286)
Q Consensus 246 ~~~~~~A~~~~~~G~vD~Vv~~~-e~~~~l~~~L~~l~~ 283 (286)
++...+|.++++.|+|..|.|+. ++.+....+.+.++.
T Consensus 194 Tar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~ 232 (292)
T KOG1681|consen 194 TARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIAS 232 (292)
T ss_pred hhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhcc
Confidence 45567888999999999999996 788887777776654
No 129
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.32 E-value=8.4e-06 Score=82.16 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHH-hCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcccccc
Q psy5220 142 VGERFIQGAQISL-EQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGD 219 (286)
Q Consensus 142 ~~~K~~r~~~~A~-~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d 219 (286)
+.+.+.+.++.|. +.++..|+| +||||..... ...+.+++.+++..++|+|+.+.|.|.+||++ .++.||
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~a-------se~i~~~i~~~~~~gKPVva~~~g~aaSggY~-iA~aaD 401 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFA-------SEIIRRELARAQARGKPVIVSMGAMAASGGYW-IASAAD 401 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHH-------HHHHHHHHHHHHhCCCcEEEEECCccccHHHH-HHHhCC
Confidence 4566777777774 556655555 8999875421 12334456667777899999999999999975 677899
Q ss_pred EEEEcCCcEEEeeC
Q psy5220 220 IVIAEPGALIGFAG 233 (286)
Q Consensus 220 ~via~~~A~i~~~g 233 (286)
.++|.|++.+|..|
T Consensus 402 ~I~a~p~t~~GSIG 415 (584)
T TIGR00705 402 YIVASPNTITGSIG 415 (584)
T ss_pred EEEECCCCeeecCE
Confidence 99999999774443
No 130
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.28 E-value=6.5e-06 Score=72.42 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=90.1
Q ss_pred cccCCChHHHHHHHHHHHHHHhC--CCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhh
Q psy5220 134 MGGSMGSVVGERFIQGAQISLEQ--KIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVS 211 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~~~--~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~ 211 (286)
+.|.++...+..+.+.+..+... .-|+++..+|+|..+-+|. .+..++. ..+.|+++++.|.|.+.|+
T Consensus 40 l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~-------~I~d~i~---~~~~~v~t~~~G~aaSaa~ 109 (207)
T PRK12553 40 LGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGD-------AIYDTIQ---FIRPDVQTVCTGQAASAGA 109 (207)
T ss_pred EcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHH-------HHHHHHH---hcCCCcEEEEEeehhhHHH
Confidence 34777889999998888877543 5799999999998875543 2333333 3467999999999999887
Q ss_pred hhcccccc--EEEEcCCcEEEeeChhhh----------------------------hhhhhcc-------CC-CCCCCHH
Q psy5220 212 ASFAFMGD--IVIAEPGALIGFAGPRVI----------------------------KNTVKEK-------LP-DGFQSSE 253 (286)
Q Consensus 212 ~s~a~~~d--~via~~~A~i~~~gp~vi----------------------------~~~~g~~-------l~-~~~~~A~ 253 (286)
+ +.+++| .+++.|++.+.+..|... ...+|.. +. +.+.+|+
T Consensus 110 l-I~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~ 188 (207)
T PRK12553 110 V-LLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAE 188 (207)
T ss_pred H-HHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHH
Confidence 6 445677 589999999999888610 0011211 11 3467899
Q ss_pred HHHHcCccceEeCch
Q psy5220 254 FLLKKGALDMIIDRR 268 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~ 268 (286)
++.+.|+||.|+++.
T Consensus 189 EA~e~GliD~I~~~~ 203 (207)
T PRK12553 189 EAKDYGLVDQIITSY 203 (207)
T ss_pred HHHHcCCccEEcCch
Confidence 999999999999875
No 131
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.26 E-value=8.2e-06 Score=69.04 Aligned_cols=120 Identities=14% Similarity=0.183 Sum_probs=84.5
Q ss_pred cccCCChHHHHHHHHHHHHHHhC--CCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhh
Q psy5220 134 MGGSMGSVVGERFIQGAQISLEQ--KIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVS 211 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~~~--~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~ 211 (286)
+.|.++...++.+.+.+..+... .-|+++..+|+|..+.++. .+...+.. .+.|+++++.|.|.++|+
T Consensus 5 i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~-------~i~~~i~~---~~~~v~~~~~g~aaS~~~ 74 (162)
T cd07013 5 LTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGM-------AIYDTIKF---IKADVVTIIDGLAASMGS 74 (162)
T ss_pred EccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHH-------HHHHHHHh---cCCCceEEEEeehhhHHH
Confidence 45777888899998888877543 3699999999998764432 33333443 467999999999999987
Q ss_pred hhcccccc--EEEEcCCcEEEeeChhh--------hh------------------hhhhcc-------CC-CCCCCHHHH
Q psy5220 212 ASFAFMGD--IVIAEPGALIGFAGPRV--------IK------------------NTVKEK-------LP-DGFQSSEFL 255 (286)
Q Consensus 212 ~s~a~~~d--~via~~~A~i~~~gp~v--------i~------------------~~~g~~-------l~-~~~~~A~~~ 255 (286)
+ +++++| .+++.|++++.+..|.. ++ ..+|.. +. +.+.+|+.+
T Consensus 75 ~-i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA 153 (162)
T cd07013 75 V-IAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREA 153 (162)
T ss_pred H-HHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHH
Confidence 6 455788 68888899998876642 10 011211 11 335689999
Q ss_pred HHcCccceE
Q psy5220 256 LKKGALDMI 264 (286)
Q Consensus 256 ~~~G~vD~V 264 (286)
.+.|+||.|
T Consensus 154 ~~~GliD~i 162 (162)
T cd07013 154 VEYGFADTI 162 (162)
T ss_pred HHcCCCCcC
Confidence 999999975
No 132
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.25 E-value=1.8e-05 Score=69.21 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=88.1
Q ss_pred cccCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhh
Q psy5220 134 MGGSMGSVVGERFIQGAQISL--EQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVS 211 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~ 211 (286)
++|.++...+..+..-+.... ...-|+.+..+|+|..+.+|.. ++..+ ...+.|+++++.|.|.|.|+
T Consensus 36 i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~-------I~d~i---~~~~~~v~t~~~G~aaS~a~ 105 (200)
T PRK00277 36 LGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA-------IYDTM---QFIKPDVSTICIGQAASMGA 105 (200)
T ss_pred ECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH-------HHHHH---HhcCCCEEEEEEeEeccHHH
Confidence 468888888888877777654 3456899999999988755432 33333 33467999999999999887
Q ss_pred hhccccc--cEEEEcCCcEEEeeChhh--------h------------------hhhhhcc-------CC-CCCCCHHHH
Q psy5220 212 ASFAFMG--DIVIAEPGALIGFAGPRV--------I------------------KNTVKEK-------LP-DGFQSSEFL 255 (286)
Q Consensus 212 ~s~a~~~--d~via~~~A~i~~~gp~v--------i------------------~~~~g~~-------l~-~~~~~A~~~ 255 (286)
.. ++++ +.+++.|++++.+.-|.. + .+.+|.. +. +.+.+|+++
T Consensus 106 ~I-~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA 184 (200)
T PRK00277 106 FL-LAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEA 184 (200)
T ss_pred HH-HhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHH
Confidence 53 3334 479999999999986642 1 1112221 11 446899999
Q ss_pred HHcCccceEeCch
Q psy5220 256 LKKGALDMIIDRR 268 (286)
Q Consensus 256 ~~~G~vD~Vv~~~ 268 (286)
.+.|+||.|+...
T Consensus 185 ~e~GliD~Ii~~~ 197 (200)
T PRK00277 185 KEYGLIDEVLTKR 197 (200)
T ss_pred HHcCCccEEeecC
Confidence 9999999999763
No 133
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.21 E-value=3.2e-05 Score=67.60 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=87.8
Q ss_pred ccCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhh
Q psy5220 135 GGSMGSVVGERFIQGAQISL--EQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSA 212 (286)
Q Consensus 135 gGs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~ 212 (286)
.|.++...+.-+.+.+..+. ...-||++..+|+|..+-+|. .+...+ ...+.|+++++.|-+++.|++
T Consensus 29 ~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~-------aI~d~i---~~~~~~V~t~v~G~AaSaasl 98 (197)
T PRK14512 29 AGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGF-------AIFNMI---RFVKPKVFTIGVGLVASAAAL 98 (197)
T ss_pred CCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHH-------HHHHHH---HhCCCCEEEEEEeeeHhHHHH
Confidence 35566777777777776654 335799999999998875543 233333 335789999999999998876
Q ss_pred hccccccE--EEEcCCcEEEeeChhh--------hhh------------------hhhcc-------CC-CCCCCHHHHH
Q psy5220 213 SFAFMGDI--VIAEPGALIGFAGPRV--------IKN------------------TVKEK-------LP-DGFQSSEFLL 256 (286)
Q Consensus 213 s~a~~~d~--via~~~A~i~~~gp~v--------i~~------------------~~g~~-------l~-~~~~~A~~~~ 256 (286)
.+++++- +++.|++++.+.-|.. ++. .+|+. +. +-+.+|+++.
T Consensus 99 -Il~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~ 177 (197)
T PRK14512 99 -IFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAV 177 (197)
T ss_pred -HHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHH
Confidence 4456764 7888999887776643 110 11221 11 3457899999
Q ss_pred HcCccceEeCch-hHHHH
Q psy5220 257 KKGALDMIIDRR-KLRFK 273 (286)
Q Consensus 257 ~~G~vD~Vv~~~-e~~~~ 273 (286)
+.|+||.|+++. ++.+.
T Consensus 178 ~yGliD~I~~~~~~l~~~ 195 (197)
T PRK14512 178 KYGLVFEVVETRLELEEF 195 (197)
T ss_pred HcCCccEeecCcHHhHhh
Confidence 999999999874 55543
No 134
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.17 E-value=1.9e-05 Score=68.89 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=90.7
Q ss_pred ccccCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 133 FMGGSMGSVVGERFIQGAQISL--EQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 133 ~~gGs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
|++|.++...+..+..-+...+ ...-|+.+..+|+|..+.+|.. ++.++. ..+.|+.+++.|-+.+.+
T Consensus 29 fl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~a-------Iyd~m~---~~~~~V~t~~~G~AaS~A 98 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLG-------IFDTMQ---HVKPDVHTVCVGLAASMG 98 (196)
T ss_pred EECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHH-------HHHHHH---hcCCCEEEEEEEEehhHH
Confidence 5678899999999887776653 3357999999999988866532 333333 346799999999999988
Q ss_pred hhhccccccE--EEEcCCcEEEeeChhh--------hh------------------hhhhcc-------CC-CCCCCHHH
Q psy5220 211 SASFAFMGDI--VIAEPGALIGFAGPRV--------IK------------------NTVKEK-------LP-DGFQSSEF 254 (286)
Q Consensus 211 ~~s~a~~~d~--via~~~A~i~~~gp~v--------i~------------------~~~g~~-------l~-~~~~~A~~ 254 (286)
+. +.++++. ++|.|+|++.+.-|.. ++ ..+|+. +. +.+.+|++
T Consensus 99 sl-Il~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~E 177 (196)
T PRK12551 99 AF-LLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSE 177 (196)
T ss_pred HH-HHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHH
Confidence 75 4456764 7899999998887753 10 012322 12 44689999
Q ss_pred HHHcCccceEeCch
Q psy5220 255 LLKKGALDMIIDRR 268 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~ 268 (286)
+.+.|+||.|++..
T Consensus 178 A~eyGliD~I~~~~ 191 (196)
T PRK12551 178 AVEYGLIDLVIDKR 191 (196)
T ss_pred HHHcCCCcEEeccC
Confidence 99999999999864
No 135
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.15 E-value=1.9e-05 Score=70.10 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=88.3
Q ss_pred ccccCCChHHHHHHHHHHHHH--HhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 133 FMGGSMGSVVGERFIQGAQIS--LEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 133 ~~gGs~~~~~~~K~~r~~~~A--~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
|++|.++...+..+..-+-.- .+.+-|+.+..+|+|..+.+|.. +..++. ..+.|+.+++.|-+.+.+
T Consensus 58 fl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGla-------Iyd~m~---~~~~~V~tv~~G~AAS~A 127 (221)
T PRK14514 58 FLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLG-------IYDTMQ---FISSDVATICTGMAASMA 127 (221)
T ss_pred EECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHH-------HHHHHH---hcCCCEEEEEEEEehhHH
Confidence 467888888888887744332 23458999999999988765532 333333 346799999999999988
Q ss_pred hhhccccccE--EEEcCCcEEEeeChhh--------hh------------------hhhhcc-------CC-CCCCCHHH
Q psy5220 211 SASFAFMGDI--VIAEPGALIGFAGPRV--------IK------------------NTVKEK-------LP-DGFQSSEF 254 (286)
Q Consensus 211 ~~s~a~~~d~--via~~~A~i~~~gp~v--------i~------------------~~~g~~-------l~-~~~~~A~~ 254 (286)
+.. .+++|. ++|.|+|++.+.-|.. ++ ..+|+. +. +.+.+|++
T Consensus 128 slI-l~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~E 206 (221)
T PRK14514 128 SVL-LVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQE 206 (221)
T ss_pred HHH-HhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHH
Confidence 764 456775 8899999998876653 10 112322 22 45689999
Q ss_pred HHHcCccceEeCc
Q psy5220 255 LLKKGALDMIIDR 267 (286)
Q Consensus 255 ~~~~G~vD~Vv~~ 267 (286)
+.+.|+||.|+..
T Consensus 207 A~eyGliD~Vi~~ 219 (221)
T PRK14514 207 AKEYGMIDEVLIK 219 (221)
T ss_pred HHHcCCccEEeec
Confidence 9999999999864
No 136
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.1e-05 Score=75.39 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=102.4
Q ss_pred cCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCC-CcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCE
Q psy5220 120 MNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQK-IPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPF 198 (286)
Q Consensus 120 ~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~-iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~ 198 (286)
.+.+|.++--| |.+++.++.-+.|.++.|.+.+ -.+|+..||+|.... + |.++ ++++.+.++|+
T Consensus 24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~----s---m~~i---v~~i~~s~vPV 88 (436)
T COG1030 24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLD----S---MRQI---VRAILNSPVPV 88 (436)
T ss_pred cCCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHH----H---HHHH---HHHHHcCCCCE
Confidence 56778888777 9999999999999999999888 788888999997652 1 2344 33456789998
Q ss_pred EEEEcCC---cchhhhhhccccccEEEEcCCcEEEeeChhhhh------h---------------hhhcc-------CCC
Q psy5220 199 ISVLTNP---TMGGVSASFAFMGDIVIAEPGALIGFAGPRVIK------N---------------TVKEK-------LPD 247 (286)
Q Consensus 199 Isvv~g~---~~GGg~~s~a~~~d~via~~~A~i~~~gp~vi~------~---------------~~g~~-------l~~ 247 (286)
+..|.=+ |...|++ .+|++|+..|.|+..+|-+-|-.+. + ..|++ +++
T Consensus 89 ~~yv~p~ga~AaSAGty-I~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~ 167 (436)
T COG1030 89 IGYVVPDGARAASAGTY-ILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTE 167 (436)
T ss_pred EEEEcCCCcchhchhhH-HHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhh
Confidence 8877755 6677765 5689999999999999988664321 0 01111 122
Q ss_pred -CCCCHHHHHHcCccceEeCch-hHHHHH
Q psy5220 248 -GFQSSEFLLKKGALDMIIDRR-KLRFKI 274 (286)
Q Consensus 248 -~~~~A~~~~~~G~vD~Vv~~~-e~~~~l 274 (286)
.-.+++++++.|++|.+..+. |+.+.+
T Consensus 168 ~~~l~a~eA~~~~vid~iA~~~~ell~~~ 196 (436)
T COG1030 168 NLSLTAEEALRQGVIDLIARDLNELLKKL 196 (436)
T ss_pred ccCCChhHHHhcCccccccCCHHHHHHHc
Confidence 236799999999999998775 665543
No 137
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.07 E-value=0.0001 Score=69.08 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEEEE
Q psy5220 144 ERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIA 223 (286)
Q Consensus 144 ~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via 223 (286)
+.+....+.|... --||+-.||||+..... +.+...+.++++.++|+++.+.+-+..||++ +|+.||-|+|
T Consensus 111 e~i~a~l~~A~~~-~aVvLridSpGG~v~~s-------~~a~~~l~~lr~~~kpVva~v~~~AASggY~-iAsaAD~I~A 181 (330)
T PRK11778 111 EEITAILAVAKPG-DEVLLRLESPGGVVHGY-------GLAASQLQRLRDAGIPLTVAVDKVAASGGYM-MACVADKIIA 181 (330)
T ss_pred HHHHHHHHhccCC-CeEEEEEeCCCCchhHH-------HHHHHHHHHHHhcCCCEEEEECCchhhHHHH-HHHhCCEEEE
Confidence 4444445555433 34777799999876331 1122235567778899999999999888865 6778999999
Q ss_pred cCCcEEEeeChh
Q psy5220 224 EPGALIGFAGPR 235 (286)
Q Consensus 224 ~~~A~i~~~gp~ 235 (286)
.|.+.+|..|.-
T Consensus 182 ~P~a~vGSIGVi 193 (330)
T PRK11778 182 APFAIVGSIGVV 193 (330)
T ss_pred CCCCeEEeeeee
Confidence 999998888654
No 138
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.07 E-value=5.7e-05 Score=65.68 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=82.1
Q ss_pred ccCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhh
Q psy5220 135 GGSMGSVVGERFIQGAQISL--EQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSA 212 (286)
Q Consensus 135 gGs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~ 212 (286)
+|.++...+..+..-+.... ...-|+++..+|+|..+..|.. ++..+. ..+.|+.+++.|-|.+.|+.
T Consensus 32 ~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~-------I~d~l~---~~~~~v~t~~~G~AaSaasl 101 (191)
T TIGR00493 32 SGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLA-------IYDTMQ---FIKPDVSTICIGQAASMGAF 101 (191)
T ss_pred ccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHH-------HHHHHH---hcCCCEEEEEEEeeccHHHH
Confidence 46666666666665554443 4457899999999988755432 333333 33568889999999988865
Q ss_pred hcccccc--EEEEcCCcEEEeeChhh--------hh------------------hhhhcc-------CC-CCCCCHHHHH
Q psy5220 213 SFAFMGD--IVIAEPGALIGFAGPRV--------IK------------------NTVKEK-------LP-DGFQSSEFLL 256 (286)
Q Consensus 213 s~a~~~d--~via~~~A~i~~~gp~v--------i~------------------~~~g~~-------l~-~~~~~A~~~~ 256 (286)
. +++++ .+++.|+|++.+.-|.. +. ..+|+. +. +.+.+|+++.
T Consensus 102 I-~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~ 180 (191)
T TIGR00493 102 L-LSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAK 180 (191)
T ss_pred H-HhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHH
Confidence 3 34555 58999999999987742 11 012221 11 3468899999
Q ss_pred HcCccceEeCc
Q psy5220 257 KKGALDMIIDR 267 (286)
Q Consensus 257 ~~G~vD~Vv~~ 267 (286)
+.|+||.|+.+
T Consensus 181 ~~GliD~ii~~ 191 (191)
T TIGR00493 181 EYGLIDSVLTR 191 (191)
T ss_pred HcCCccEEecC
Confidence 99999999864
No 139
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.07 E-value=3.4e-05 Score=67.56 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=89.4
Q ss_pred ccccCCChHHHHHHHHHHHH-H-HhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 133 FMGGSMGSVVGERFIQGAQI-S-LEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 133 ~~gGs~~~~~~~K~~r~~~~-A-~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
|++|.++...+..++.-+-. . ....-|+.+..+|+|..+.+|.. +...+ ...+.|+.+++.|-|.+.+
T Consensus 34 fl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~a-------Iyd~m---~~~~~~V~Tv~~G~AaS~a 103 (200)
T CHL00028 34 FLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLA-------IYDTM---QFVKPDVHTICLGLAASMA 103 (200)
T ss_pred EECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHH-------HHHHH---HhcCCCEEEEEEEehHHHH
Confidence 45788888888887655444 4 34568999999999988765532 33333 3457899999999999988
Q ss_pred hhhcccccc--EEEEcCCcEEEeeChhhh--h-------------------------hhhhcc-------CC-CCCCCHH
Q psy5220 211 SASFAFMGD--IVIAEPGALIGFAGPRVI--K-------------------------NTVKEK-------LP-DGFQSSE 253 (286)
Q Consensus 211 ~~s~a~~~d--~via~~~A~i~~~gp~vi--~-------------------------~~~g~~-------l~-~~~~~A~ 253 (286)
+..+ ++++ -++|.|+|++.+.-|..- . ..+|+. +. +.+.+|+
T Consensus 104 slIl-~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~ 182 (200)
T CHL00028 104 SFIL-AGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSAT 182 (200)
T ss_pred HHHH-hCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHH
Confidence 7644 5677 589999999988766431 0 012221 12 4468999
Q ss_pred HHHHcCccceEeCch
Q psy5220 254 FLLKKGALDMIIDRR 268 (286)
Q Consensus 254 ~~~~~G~vD~Vv~~~ 268 (286)
++.+.|+||.|+++.
T Consensus 183 EA~eyGliD~I~~~~ 197 (200)
T CHL00028 183 EAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHcCCCcEEeecC
Confidence 999999999999875
No 140
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.04 E-value=2.7e-05 Score=66.74 Aligned_cols=124 Identities=20% Similarity=0.331 Sum_probs=86.2
Q ss_pred ccccCCChHHHHHHHHHHHHH--HhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 133 FMGGSMGSVVGERFIQGAQIS--LEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 133 ~~gGs~~~~~~~K~~r~~~~A--~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
|+.|.++...+..+...+... .+..-|+.++.+|+|..+.+|.. +. ..+...+.|+++++.|.|.+.+
T Consensus 20 ~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~-------i~---~~i~~~~~~v~t~~~G~aaSaa 89 (182)
T PF00574_consen 20 FLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLA-------IY---DAIRSSKAPVTTVVLGLAASAA 89 (182)
T ss_dssp EEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHH-------HH---HHHHHSSSEEEEEEEEEEETHH
T ss_pred EECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHH-------HH---HHHHhcCCCeEEEEeCccccce
Confidence 356889999999988765543 45667999999999988755432 22 2334458999999999999988
Q ss_pred hhhccccccE--EEEcCCcEEEeeChhh--------hhh------------------hhhcc-------CC-CCCCCHHH
Q psy5220 211 SASFAFMGDI--VIAEPGALIGFAGPRV--------IKN------------------TVKEK-------LP-DGFQSSEF 254 (286)
Q Consensus 211 ~~s~a~~~d~--via~~~A~i~~~gp~v--------i~~------------------~~g~~-------l~-~~~~~A~~ 254 (286)
+..+ ++|+. +++.|+|.+.+..|.. +.. .+|.. +. +.+.+|++
T Consensus 90 ~~i~-~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~E 168 (182)
T PF00574_consen 90 TLIF-LAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEE 168 (182)
T ss_dssp HHHH-HTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHH
T ss_pred ehhh-hcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHH
Confidence 7644 57877 7999999998887753 110 11111 11 23468999
Q ss_pred HHHcCccceEeCc
Q psy5220 255 LLKKGALDMIIDR 267 (286)
Q Consensus 255 ~~~~G~vD~Vv~~ 267 (286)
+.+.|+||.|+.+
T Consensus 169 A~~~GiiD~I~~~ 181 (182)
T PF00574_consen 169 ALEYGIIDEIIES 181 (182)
T ss_dssp HHHHTSSSEEESS
T ss_pred HHHcCCCCEeccC
Confidence 9999999999975
No 141
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.02 E-value=3.4e-05 Score=65.78 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=85.8
Q ss_pred cccCCChHHHHHHHHHHHHHHhC--CCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhh
Q psy5220 134 MGGSMGSVVGERFIQGAQISLEQ--KIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVS 211 (286)
Q Consensus 134 ~gGs~~~~~~~K~~r~~~~A~~~--~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~ 211 (286)
+.|.++...+..+...+..+... .-|+++..+|+|..+.+|.. +...+. ..+.|+++++.|-|.++++
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~-------i~~~l~---~~~~~v~t~~~g~aaS~~~ 83 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLA-------IYDTMQ---YIKPPVSTICLGLAASMGA 83 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHH-------HHHHHH---hcCCCEEEEEEeEehhHHH
Confidence 45777888888888888877643 36899999999988755432 223333 3478999999999999987
Q ss_pred hhcccccc--EEEEcCCcEEEeeChhhh--------h------------------hhhhcc-------C-CCCCCCHHHH
Q psy5220 212 ASFAFMGD--IVIAEPGALIGFAGPRVI--------K------------------NTVKEK-------L-PDGFQSSEFL 255 (286)
Q Consensus 212 ~s~a~~~d--~via~~~A~i~~~gp~vi--------~------------------~~~g~~-------l-~~~~~~A~~~ 255 (286)
+ .++++| -+++.|+|.+.+..|... . ..+|.. + .+.+.+|+++
T Consensus 84 ~-i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA 162 (171)
T cd07017 84 L-LLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEA 162 (171)
T ss_pred H-HHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Confidence 6 445788 799999999988876531 0 011111 2 2446789999
Q ss_pred HHcCccceE
Q psy5220 256 LKKGALDMI 264 (286)
Q Consensus 256 ~~~G~vD~V 264 (286)
.+.|+||.|
T Consensus 163 ~e~GiiD~V 171 (171)
T cd07017 163 KEYGLIDKI 171 (171)
T ss_pred HHcCCCccC
Confidence 999999975
No 142
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.01 E-value=6.6e-05 Score=65.76 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=89.8
Q ss_pred ccccCCChHHHHHHHHHHHHHH--hCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 133 FMGGSMGSVVGERFIQGAQISL--EQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 133 ~~gGs~~~~~~~K~~r~~~~A~--~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
|++|.+....+..++.-+-.-+ ...-|+-+..+|+|..+-+|.. ++..+. ..+.|+.+++.|-|.+.+
T Consensus 31 fl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~Gla-------Iyd~m~---~~~~~V~Ti~~G~AaS~A 100 (201)
T PRK14513 31 FVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLA-------IYDTMR---YIKAPVSTICVGIAMSMG 100 (201)
T ss_pred EECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHH-------HHHHHH---hcCCCEEEEEEeeehhhH
Confidence 4578888999888865554433 3457999999999988866532 333333 346799999999999998
Q ss_pred hhhccccccE--EEEcCCcEEEeeChhh--------hh------------------hhhhcc-------CC-CCCCCHHH
Q psy5220 211 SASFAFMGDI--VIAEPGALIGFAGPRV--------IK------------------NTVKEK-------LP-DGFQSSEF 254 (286)
Q Consensus 211 ~~s~a~~~d~--via~~~A~i~~~gp~v--------i~------------------~~~g~~-------l~-~~~~~A~~ 254 (286)
+. +.+++|- ++|.|+|++-+--|.. +. ..+|+. +. +.+.+|++
T Consensus 101 s~-il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~E 179 (201)
T PRK14513 101 SV-LLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEE 179 (201)
T ss_pred HH-HHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHH
Confidence 75 4456775 8899999998887753 00 112322 12 45789999
Q ss_pred HHHcCccceEeCchh
Q psy5220 255 LLKKGALDMIIDRRK 269 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e 269 (286)
+.+.|+||.|+++.+
T Consensus 180 A~eyGliD~I~~~~~ 194 (201)
T PRK14513 180 AKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHcCCCcEEeccCC
Confidence 999999999998743
No 143
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00015 Score=67.91 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=63.0
Q ss_pred HHHHHHHHHHH-HhCC-CcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccE
Q psy5220 143 GERFIQGAQIS-LEQK-IPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDI 220 (286)
Q Consensus 143 ~~K~~r~~~~A-~~~~-iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~ 220 (286)
.+.+...++.+ .+.+ -+||+..+|||..... ...+.+.+.+++..+ |+++.|-+.|..||++ .|+.+|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a-------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~-IA~aAd~ 152 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSPGGSVVA-------SELIARALKRLRAKK-PVVVSVGGYAASGGYY-IALAADK 152 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECcCCchhH-------HHHHHHHHHHHhhcC-CEEEEECCeecchhhh-hhccCCE
Confidence 34444444444 3343 4678889999976632 245566778887767 9999999999999976 7889999
Q ss_pred EEEcCCcEEEeeChhh
Q psy5220 221 VIAEPGALIGFAGPRV 236 (286)
Q Consensus 221 via~~~A~i~~~gp~v 236 (286)
++|.|++.+|-.|+-.
T Consensus 153 I~a~p~si~GSIGVi~ 168 (317)
T COG0616 153 IVADPSSITGSIGVIS 168 (317)
T ss_pred EEecCCceeeeceeEE
Confidence 9999999998887754
No 144
>KOG0368|consensus
Probab=97.91 E-value=2.5e-05 Score=83.23 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCCHHHHHH----------hhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEEEEEcCeeEE
Q psy5220 56 HMQIKARDRLN----------NFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLV 125 (286)
Q Consensus 56 ~~~~~ar~ri~----------~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~g~i~G~~v~ 125 (286)
+.++++|.-|+ -|||.|||.|+... -..+||||-||++|.||+
T Consensus 1800 q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~~---------------------------WAktVV~GRArLgGIPvG 1852 (2196)
T KOG0368|consen 1800 QNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILSG---------------------------WAKTVVTGRARLGGIPVG 1852 (2196)
T ss_pred CCCCCHHHHhcCCcCCCccccccccCccHHHHHhH---------------------------HhhHheecceecCCcceE
Confidence 34566666554 48899999988762 377999999999999999
Q ss_pred EEEEcCcc---------------------cccCCChHHHHHHHHHHHHHHhCCCcEEEEEe----CCCc-chhhchHhHH
Q psy5220 126 VAVFEFEF---------------------MGGSMGSVVGERFIQGAQISLEQKIPFVCITA----TGGA-RMQEGLLSLM 179 (286)
Q Consensus 126 v~a~d~~~---------------------~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~d----sgGa-~i~Eg~~~l~ 179 (286)
|+|.+..- .|=.|.+.++-|-+.++.--+..++|+++|.+ |||. +|-++++.+
T Consensus 1853 VIavEtrtve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkf- 1931 (2196)
T KOG0368|consen 1853 VIAVETRTVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKF- 1931 (2196)
T ss_pred EEEEEeeeeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHH-
Confidence 99986542 36678899999999999988889999999987 5554 455554422
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEc--CCcchhhhhhcc---ccccE--EEEcCCcEEEeeChhh
Q psy5220 180 QMAKTTAILTKLSKKKIPFISVLT--NPTMGGVSASFA---FMGDI--VIAEPGALIGFAGPRV 236 (286)
Q Consensus 180 ~~~~~~~a~~~l~~~~vP~Isvv~--g~~~GGg~~s~a---~~~d~--via~~~A~i~~~gp~v 236 (286)
.+.+..++. +-..|++.-+= |.-=||. .... .-.|. .+|...++-++..|+.
T Consensus 1932 -Ga~IVDaL~---~YkQPv~vYIPp~gELRGGs-WvVvD~tIn~~~memyAD~~sRggVLEPeg 1990 (2196)
T KOG0368|consen 1932 -GAYIVDALR---QYKQPVLVYIPPMGELRGGS-WVVVDPTINPDQMEMYADEESRGGVLEPEG 1990 (2196)
T ss_pred -HHHHHHHHH---HhCCceEEEcCcchhhcCce-EEEEcCccCHHHHHHHhhhhhccccccCCc
Confidence 355544444 45678886554 4434443 2121 00111 2345566677777765
No 145
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00015 Score=63.20 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=76.6
Q ss_pred HHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccccEE--EEcCCcEEE
Q psy5220 153 SLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIV--IAEPGALIG 230 (286)
Q Consensus 153 A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~v--ia~~~A~i~ 230 (286)
+....-||.+..+|+|..+-+|.. ++..++ ..+.|+.++++|-+.+-|+. ++++++-- ++.|+|++-
T Consensus 53 a~~~~k~I~lyINSpGG~V~aG~A-------Iydtm~---~ik~~V~ti~~G~AaSmgs~-l~~aG~~g~r~~lPnsrim 121 (200)
T COG0740 53 AEDPDKDIYLYINSPGGSVTAGLA-------IYDTMQ---FIKPPVSTICMGQAASMGSV-LLMAGDKGKRFALPNARIM 121 (200)
T ss_pred hcCCCCCeEEEEeCCCcccchhHH-------HHHHHH---hcCCCeEEEEecHHHhHHHH-HHhcCCCCCceeCCCceEE
Confidence 345577899999999988876643 222233 34789999999999888865 45677765 999999998
Q ss_pred eeChhh--------h------------------hhhhhccC-------C-CCCCCHHHHHHcCccceEeCchh
Q psy5220 231 FAGPRV--------I------------------KNTVKEKL-------P-DGFQSSEFLLKKGALDMIIDRRK 269 (286)
Q Consensus 231 ~~gp~v--------i------------------~~~~g~~l-------~-~~~~~A~~~~~~G~vD~Vv~~~e 269 (286)
+--|.. + ...+|+.+ . +.+.+|+++.+.|+||.|+...+
T Consensus 122 IHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 122 IHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred EecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 887764 0 01123321 1 45789999999999999998763
No 146
>PRK10949 protease 4; Provisional
Probab=97.78 E-value=0.00037 Score=70.70 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHH-HhCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccccc
Q psy5220 141 VVGERFIQGAQIS-LEQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMG 218 (286)
Q Consensus 141 ~~~~K~~r~~~~A-~~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~~ 218 (286)
.+++.+.+.++.| .+.++--|+| +||+|.... +...+.+++.++++.++|+|+.+.+-+..||++ .++.|
T Consensus 347 ~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~-------ase~i~~~i~~~r~~gKPVvas~~~~aASggY~-iA~aa 418 (618)
T PRK10949 347 VGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVT-------ASEVIRAELAAARAAGKPVVVSMGGMAASGGYW-ISTPA 418 (618)
T ss_pred cCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHH-------HHHHHHHHHHHHHhcCCcEEEEECCCCccHHHH-HHHhc
Confidence 3456677777776 4677776666 899996541 223455567777777899999988888888865 67789
Q ss_pred cEEEEcCCcEEEeeC
Q psy5220 219 DIVIAEPGALIGFAG 233 (286)
Q Consensus 219 d~via~~~A~i~~~g 233 (286)
|-++|.|++..|..|
T Consensus 419 d~I~a~p~t~tGSIG 433 (618)
T PRK10949 419 NYIVASPSTLTGSIG 433 (618)
T ss_pred CEEEECCCCceeeCc
Confidence 999999987665543
No 147
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.61 E-value=0.00043 Score=61.48 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=81.3
Q ss_pred HHHHHHHH-HHHHH-HhCCCcEEEEEeCCCcchhhch--HhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccc
Q psy5220 141 VVGERFIQ-GAQIS-LEQKIPFVCITATGGARMQEGL--LSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAF 216 (286)
Q Consensus 141 ~~~~K~~r-~~~~A-~~~~iPlV~l~dsgGa~i~Eg~--~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~ 216 (286)
..+..+.. ++-+. ....-|+-+..+|+|..+..|. ......-.++..+.. .+-|+.+++.|-+++.++..+ +
T Consensus 52 ~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~---ik~~V~Tv~~G~AaS~AslIl-~ 127 (222)
T PRK12552 52 DVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRY---IKPPVHTICIGQAMGTAAMIL-S 127 (222)
T ss_pred hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHh---cCCCeEEEEEeehhhHHHHHH-h
Confidence 36666543 33443 3456899999999998764431 111112234444443 356899999999999987644 4
Q ss_pred cccE--EEEcCCcEEEeeChhhh--------h------------------hhhhcc-------CC-CCCCCHHHHHHcCc
Q psy5220 217 MGDI--VIAEPGALIGFAGPRVI--------K------------------NTVKEK-------LP-DGFQSSEFLLKKGA 260 (286)
Q Consensus 217 ~~d~--via~~~A~i~~~gp~vi--------~------------------~~~g~~-------l~-~~~~~A~~~~~~G~ 260 (286)
+++- ++|.|+|++-+--|..- . ..+|+. +. +.+.+|+++.+.|+
T Consensus 128 aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGl 207 (222)
T PRK12552 128 AGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGL 207 (222)
T ss_pred CCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCC
Confidence 6774 88999999988877530 0 112322 12 44789999999999
Q ss_pred cceEeCch
Q psy5220 261 LDMIIDRR 268 (286)
Q Consensus 261 vD~Vv~~~ 268 (286)
||.|+.+.
T Consensus 208 iD~Ii~~~ 215 (222)
T PRK12552 208 IDRVLESR 215 (222)
T ss_pred CcEEeccC
Confidence 99999764
No 148
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.24 E-value=0.0014 Score=59.63 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=70.6
Q ss_pred cCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcc
Q psy5220 136 GSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFA 215 (286)
Q Consensus 136 Gs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a 215 (286)
..++....+.+.|+++.+.+. .|+.++.+|+|++.-. ..++...+ .+...|+.++|-+.|..+|++ .|
T Consensus 70 ~~I~i~dse~v~raI~~~~~~-~~IdLii~TpGG~v~A-------A~~I~~~l---~~~~~~v~v~VP~~A~SAGTl-IA 137 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKD-KPIDLIIHTPGGLVDA-------AEQIARAL---REHPAKVTVIVPHYAMSAGTL-IA 137 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCC-CceEEEEECCCCcHHH-------HHHHHHHH---HhCCCCEEEEECcccccHHHH-HH
Confidence 567788899999999988554 4888889999987621 12333333 345789999999999999975 78
Q ss_pred ccccEEEEcCCcEEEeeChhh
Q psy5220 216 FMGDIVIAEPGALIGFAGPRV 236 (286)
Q Consensus 216 ~~~d~via~~~A~i~~~gp~v 236 (286)
++||-++|.|+|.+|-..|.+
T Consensus 138 LaADeIvM~p~a~LGpiDPqi 158 (285)
T PF01972_consen 138 LAADEIVMGPGAVLGPIDPQI 158 (285)
T ss_pred HhCCeEEECCCCccCCCCccc
Confidence 899999999999999988865
No 149
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=97.16 E-value=0.0001 Score=50.16 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=28.6
Q ss_pred cccccccccchhhccc-cccccccccCCCCCCHH
Q psy5220 30 KCLSCKTILYKNDLKF-NQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~-~~~vc~~~~~~~~~~ar 62 (286)
-||.|+.+++.++++. +.++||.|+++.+++++
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEECCCc
Confidence 4999999999998765 58999999999888765
No 150
>PRK10949 protease 4; Provisional
Probab=96.87 E-value=0.0087 Score=60.89 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHH-HhCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcccc
Q psy5220 140 SVVGERFIQGAQIS-LEQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFM 217 (286)
Q Consensus 140 ~~~~~K~~r~~~~A-~~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~ 217 (286)
......+.+.++.| .+.+|.-|+| .++.|.- + ..+...+..++.+++..++|+|+. +..++-+.|-+|+.
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~---~---~a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLASa 165 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGA---D---QPSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLASF 165 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCc---c---HHHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhhhh
Confidence 34567889999987 5888987777 5665421 1 112245556778888789999984 55555555557888
Q ss_pred ccEEEEcCCcEEEeeChh
Q psy5220 218 GDIVIAEPGALIGFAGPR 235 (286)
Q Consensus 218 ~d~via~~~A~i~~~gp~ 235 (286)
||-|++.|.+.+++.|..
T Consensus 166 AD~I~l~P~G~v~~~G~~ 183 (618)
T PRK10949 166 ANKIYLSPQGVVDLHGFA 183 (618)
T ss_pred CCEEEECCCceEEEeeee
Confidence 999999999999887653
No 151
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=96.84 E-value=0.0013 Score=54.91 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=30.6
Q ss_pred hcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeChhh
Q psy5220 192 SKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV 236 (286)
Q Consensus 192 ~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~gp~v 236 (286)
.+.++|+++.+.+.+..++++ +|++||-|+|.|.+.++..|...
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~-lAs~ad~I~~~p~s~vgsiGv~~ 46 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYY-LASAADEIYANPSSSVGSIGVSA 46 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHH-HHTTSSEEEE-TT-EEE---EEE
T ss_pred cccCCeEEEEECCcchhHHHH-HHHcCCEEEecCCCEEEEeChhh
Confidence 346899999999999977754 67789999999999998887653
No 152
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.80 E-value=0.0094 Score=60.31 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHH-HhCCCcEEEE-EeC-CCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccc
Q psy5220 140 SVVGERFIQGAQIS-LEQKIPFVCI-TAT-GGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAF 216 (286)
Q Consensus 140 ~~~~~K~~r~~~~A-~~~~iPlV~l-~ds-gGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~ 216 (286)
......+.+.++.| .+.++.-|+| .++ +|... .+...+..++.+++..++|+++...+.+ .+.|-+|+
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~-------~~~~ei~~ai~~fk~sgKpVvA~~~~~~--s~~YylAs 145 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDS-------PHLVEIGSALSEFKDSGKPVYAYGTNYS--QGQYYLAS 145 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCH-------HHHHHHHHHHHHHHhcCCeEEEEEcccc--chhhhhhh
Confidence 45677899999987 5788988888 453 44322 1234556677888778999999766554 33344778
Q ss_pred cccEEEEcCCcEEEeeCh
Q psy5220 217 MGDIVIAEPGALIGFAGP 234 (286)
Q Consensus 217 ~~d~via~~~A~i~~~gp 234 (286)
.||-|++.|.+.+++.|.
T Consensus 146 ~AD~I~~~p~G~v~~~G~ 163 (584)
T TIGR00705 146 FADEIILNPMGSVDLHGF 163 (584)
T ss_pred hCCEEEECCCceEEeece
Confidence 899999999999977654
No 153
>KOG0840|consensus
Probab=96.67 E-value=0.011 Score=53.06 Aligned_cols=125 Identities=20% Similarity=0.192 Sum_probs=86.6
Q ss_pred ccccCCChHHHHHH-HHHHHH-HHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 133 FMGGSMGSVVGERF-IQGAQI-SLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 133 ~~gGs~~~~~~~K~-~r~~~~-A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
|+|+.++...+..+ +.++-+ +.+..-||..+.+|+|..+-+|.. ++..+.- ..-|+-++..|-+++-|
T Consensus 96 ~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglA-------IYDtMq~---ik~~V~Tic~G~Aas~a 165 (275)
T KOG0840|consen 96 FLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLA-------IYDTMQY---IKPDVSTICVGLAASMA 165 (275)
T ss_pred eeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhh-------HHHHHHh---hCCCceeeehhhHHhHH
Confidence 46788888888776 455555 467889999999999988855532 2222222 35678888889888887
Q ss_pred hhhcccc-ccEEEEcCCcEEEeeChhh------------hhh--------------hhhcc-------CC-CCCCCHHHH
Q psy5220 211 SASFAFM-GDIVIAEPGALIGFAGPRV------------IKN--------------TVKEK-------LP-DGFQSSEFL 255 (286)
Q Consensus 211 ~~s~a~~-~d~via~~~A~i~~~gp~v------------i~~--------------~~g~~-------l~-~~~~~A~~~ 255 (286)
+..++.. --.+++.|++++-+--|.. .+. -+|+. +. +.|.+|+++
T Consensus 166 alLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA 245 (275)
T KOG0840|consen 166 ALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEA 245 (275)
T ss_pred HHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHH
Confidence 7655422 2468899999998876643 111 12322 22 568899999
Q ss_pred HHcCccceEeCc
Q psy5220 256 LKKGALDMIIDR 267 (286)
Q Consensus 256 ~~~G~vD~Vv~~ 267 (286)
.+.|+||.|++.
T Consensus 246 ~eyGliD~v~~~ 257 (275)
T KOG0840|consen 246 KEYGLIDKVIDH 257 (275)
T ss_pred HHhcchhhhhcC
Confidence 999999999984
No 154
>KOG1684|consensus
Probab=96.13 E-value=0.1 Score=49.25 Aligned_cols=141 Identities=12% Similarity=0.154 Sum_probs=86.8
Q ss_pred EEEcCcccccCCChHHHHHHHHHHHHHH-hCCCcEEEEEeCC------Ccch-------hhchHhHHH--HHHHHHHHHH
Q psy5220 127 AVFEFEFMGGSMGSVVGERFIQGAQISL-EQKIPFVCITATG------GARM-------QEGLLSLMQ--MAKTTAILTK 190 (286)
Q Consensus 127 ~a~d~~~~gGs~~~~~~~K~~r~~~~A~-~~~iPlV~l~dsg------Ga~i-------~Eg~~~l~~--~~~~~~a~~~ 190 (286)
.-|.+.. -+++..++.+++.-+..-.. +..+-+|++-.++ |.++ +++.....+ ...-..-+..
T Consensus 52 tLNRPKa-LNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~ 130 (401)
T KOG1684|consen 52 TLNRPKA-LNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHL 130 (401)
T ss_pred EecCchh-hccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Confidence 3344444 48999999999988777664 5557788888876 4454 122221110 1222222334
Q ss_pred HhcCCCCEEEEEcCCcchhhhhhccccccEEEEcCCcEEEeeC------hhh-----hhhh---hhc--cCCCCCCCHHH
Q psy5220 191 LSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAG------PRV-----IKNT---VKE--KLPDGFQSSEF 254 (286)
Q Consensus 191 l~~~~vP~Isvv~g~~~GGg~~s~a~~~d~via~~~A~i~~~g------p~v-----i~~~---~g~--~l~~~~~~A~~ 254 (286)
+..-.+|+|+++.|-++|||. .+.+-+.|++|++...+++.. |.| .... +|. -++....+...
T Consensus 131 igtY~KP~ValmdGITMGgG~-GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~YLgLTG~rl~GaD 209 (401)
T KOG1684|consen 131 IGTYLKPYVALMDGITMGGGV-GLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGLYLGLTGQRLSGAD 209 (401)
T ss_pred HHHhcCceEEEeeceeecCCc-ceeecceeEEeeccceecccccccccccCccceeehhhCccHHHHhhhhccceecchH
Confidence 455689999999999999995 466678888888887665531 222 1111 121 13333334456
Q ss_pred HHHcCccceEeCchh
Q psy5220 255 LLKKGALDMIIDRRK 269 (286)
Q Consensus 255 ~~~~G~vD~Vv~~~e 269 (286)
++..|+..+-|+.++
T Consensus 210 ~~~~GlATHyv~S~~ 224 (401)
T KOG1684|consen 210 ALRCGLATHYVPSEK 224 (401)
T ss_pred HHHhcchhhccchhh
Confidence 667888888888764
No 155
>PHA00626 hypothetical protein
Probab=94.26 E-value=0.019 Score=39.56 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=23.3
Q ss_pred ccccccc-ccchhhc---cccccccccccCCCCCCH
Q psy5220 30 KCLSCKT-ILYKNDL---KFNQQVCTKCDYHMQIKA 61 (286)
Q Consensus 30 ~c~~c~~-~~~~~~l---~~~~~vc~~~~~~~~~~a 61 (286)
+||+|+. .+++... .++.++||.|+|.+.-+|
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDSKDA 37 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCeechhh
Confidence 6999998 4665322 247899999999865544
No 156
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=94.19 E-value=0.028 Score=32.83 Aligned_cols=23 Identities=22% Similarity=0.777 Sum_probs=19.2
Q ss_pred cccccccccchhhccccccccccccCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
+||+|++.+.. +...||.|||.+
T Consensus 2 ~CP~C~~~V~~-----~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE-----SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh-----hcCcCCCCCCCC
Confidence 69999988754 468999999976
No 157
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=93.99 E-value=0.027 Score=44.49 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=27.2
Q ss_pred hhcccccccccchhhccccccccccccCCCCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
-..||+|++..| +|.++--|||+|+.-+.+.
T Consensus 9 KR~Cp~CG~kFY--DLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFY--DLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhc--cCCCCCccCCCCCCccCcc
Confidence 357999999999 6888888999999998877
No 158
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=93.13 E-value=0.021 Score=35.78 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=22.1
Q ss_pred cccccccccchhhccccccccccccCCCCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
=||.|+.++|.++-......|++|+|..+++
T Consensus 3 FCp~C~nlL~p~~~~~~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 3 FCPECGNLLYPKEDKEKRVACRTCGYEEPIS 33 (35)
T ss_dssp BETTTTSBEEEEEETTTTEEESSSS-EEE-S
T ss_pred eCCCCCccceEcCCCccCcCCCCCCCccCCC
Confidence 5999999999876554434799999976543
No 159
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=92.70 E-value=0.058 Score=43.52 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.9
Q ss_pred hhcccccccccchhhccccccccccccCCCCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
-..||+|++..| +|.++--+||+|+....+.
T Consensus 9 Kr~Cp~cg~kFY--DLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFY--DLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCcccc--ccCCCCccCCCcCCccCcc
Confidence 357999999999 6888999999999987766
No 160
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=92.39 E-value=0.065 Score=37.43 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=22.5
Q ss_pred hhcccccc-cccchhhc---cccccccccccCCCC
Q psy5220 28 WIKCLSCK-TILYKNDL---KFNQQVCTKCDYHMQ 58 (286)
Q Consensus 28 ~~~c~~c~-~~~~~~~l---~~~~~vc~~~~~~~~ 58 (286)
--.||+|+ ..||+-.- ..|-|+||+|+..++
T Consensus 27 ~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF~GP 61 (61)
T COG2888 27 KFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGFEGP 61 (61)
T ss_pred EeeCCCCCceeeehhhhHHHcCCceECCCcCccCC
Confidence 34799999 67776421 237899999998763
No 161
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=92.09 E-value=0.072 Score=37.23 Aligned_cols=33 Identities=21% Similarity=0.628 Sum_probs=23.9
Q ss_pred hhhhcccccccc-cchhhc---cccccccccccCCCC
Q psy5220 26 GLWIKCLSCKTI-LYKNDL---KFNQQVCTKCDYHMQ 58 (286)
Q Consensus 26 ~~~~~c~~c~~~-~~~~~l---~~~~~vc~~~~~~~~ 58 (286)
...-.||+|++. |++=.- ..|.|.||+|+..++
T Consensus 23 ~~~F~CPnCG~~~I~RC~~CRk~~~~Y~CP~CGF~GP 59 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEKCRKQSNPYTCPKCGFEGP 59 (59)
T ss_pred cCEeeCCCCCCeeEeechhHHhcCCceECCCCCCcCc
Confidence 355689999987 765311 237899999998764
No 162
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=91.42 E-value=0.09 Score=50.32 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=36.8
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLD 70 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D 70 (286)
.+-|.+|+..+..++-.+....|| |+.+.+.-+.+||..|.|
T Consensus 240 ~~~c~~C~~~~~~~~~~~~~~~Cp-CG~~i~~GV~~Rv~eLad 281 (374)
T TIGR00375 240 QTACEACGEPAVSEDAETACANCP-CGGRIKKGVSDRLRELSD 281 (374)
T ss_pred hhhhcccCCcCCchhhhhcCCCCC-CCCcceechHHHHHHHhc
Confidence 578999998777666566679999 999999999999999999
No 163
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=89.88 E-value=0.15 Score=29.15 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=17.8
Q ss_pred ccccccccchhhccccccccccccC
Q psy5220 31 CLSCKTILYKNDLKFNQQVCTKCDY 55 (286)
Q Consensus 31 c~~c~~~~~~~~l~~~~~vc~~~~~ 55 (286)
|.+|+..+...+. ...+.||+|+.
T Consensus 1 C~sC~~~i~~r~~-~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQ-AVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCccc-CceEeCCCCCC
Confidence 6778887776542 46789999974
No 164
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=89.66 E-value=0.16 Score=28.73 Aligned_cols=22 Identities=18% Similarity=0.629 Sum_probs=17.0
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
+||+|++.+-. +...||+|++.
T Consensus 1 ~Cp~CG~~~~~-----~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-----DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-----cCcchhhhCCc
Confidence 59999987743 35679999975
No 165
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=89.50 E-value=0.16 Score=29.46 Aligned_cols=23 Identities=17% Similarity=0.623 Sum_probs=17.9
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
..||+|++.+.. ....||+|++.
T Consensus 3 ~~Cp~Cg~~~~~-----~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDP-----DAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCc-----ccccChhhCCC
Confidence 579999985433 46899999975
No 166
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=87.97 E-value=0.086 Score=34.87 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=22.5
Q ss_pred hcccccccccchhhccccccccccccCCCCCCHH
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar 62 (286)
-+|++|+..+-..+... ...||.|+...-+..+
T Consensus 4 y~C~~CG~~~~~~~~~~-~~~Cp~CG~~~~~~~~ 36 (46)
T PRK00398 4 YKCARCGREVELDEYGT-GVRCPYCGYRILFKER 36 (46)
T ss_pred EECCCCCCEEEECCCCC-ceECCCCCCeEEEccC
Confidence 47999998765544332 6899999987544433
No 167
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=87.19 E-value=0.19 Score=30.40 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=13.7
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.+||.|+..--..| ....|||.|+|.
T Consensus 3 p~Cp~C~se~~y~D--~~~~vCp~C~~e 28 (30)
T PF08274_consen 3 PKCPLCGSEYTYED--GELLVCPECGHE 28 (30)
T ss_dssp ---TTT-----EE---SSSEEETTTTEE
T ss_pred CCCCCCCCcceecc--CCEEeCCccccc
Confidence 38999996443333 468999999985
No 168
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=87.11 E-value=0.13 Score=35.30 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=24.6
Q ss_pred hhhhccccccccc-----chhhccccccccccccCCCCCCHH
Q psy5220 26 GLWIKCLSCKTIL-----YKNDLKFNQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 26 ~~~~~c~~c~~~~-----~~~~l~~~~~vc~~~~~~~~~~ar 62 (286)
..|..||.|+... ..-.|+..--.||+|.+.--++++
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI~v~ 43 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLIDVK 43 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEEEee
Confidence 3699999999522 222455566789999987544443
No 169
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=86.53 E-value=0.23 Score=32.30 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=18.6
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
+||.|+......|-.+...+|+.|+.-
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLV 28 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BB
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCE
Confidence 799999754333545667799999863
No 170
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=86.51 E-value=0.31 Score=45.47 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=38.4
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDK 71 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~ 71 (286)
.+.|.+|.....-++-..+.+.||+|+...+=.+++||..|.|.
T Consensus 246 ~TAC~rC~t~y~le~A~~~~wrCpkCGg~ikKGV~dRv~ELad~ 289 (403)
T COG1379 246 LTACSRCYTRYSLEEAKSLRWRCPKCGGKIKKGVSDRVLELADT 289 (403)
T ss_pred HHHHHHhhhccCcchhhhhcccCcccccchhhhHHHHHHHhhcc
Confidence 57899999766666777788999999999999999999999994
No 171
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=86.32 E-value=0.27 Score=38.60 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=21.2
Q ss_pred cccccccccchhhccccccccccccCCCCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
.||+|+....++| .++++||.|+|.....
T Consensus 4 ~CP~C~seytY~d--g~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 4 PCPKCNSEYTYHD--GTQLICPSCLYEWNEN 32 (109)
T ss_pred cCCcCCCcceEec--CCeeECcccccccccc
Confidence 7999996544433 4579999999985443
No 172
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=85.28 E-value=0.34 Score=39.48 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=22.0
Q ss_pred hhcccccccccchhhccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-.-||.|+-++|+++ .--+||.|++.
T Consensus 28 ~~hCp~Cg~PLF~Kd---G~v~CPvC~~~ 53 (131)
T COG1645 28 AKHCPKCGTPLFRKD---GEVFCPVCGYR 53 (131)
T ss_pred HhhCcccCCcceeeC---CeEECCCCCce
Confidence 478999999999965 45899999975
No 173
>PRK07218 replication factor A; Provisional
Probab=84.73 E-value=0.19 Score=48.97 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=32.7
Q ss_pred chhhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCc
Q psy5220 25 KGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73 (286)
Q Consensus 25 ~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs 73 (286)
+++..+||.|++.+- .+.||.|+.- ...-.-||...+|+|+
T Consensus 294 sgli~rCP~C~r~v~-------~~~C~~hG~v-e~~~dlrik~vLDDGt 334 (423)
T PRK07218 294 SGLIERCPECGRVIQ-------KGQCRSHGAV-EGEDDLRIKAILDDGT 334 (423)
T ss_pred CcceecCcCcccccc-------CCcCCCCCCc-CCeeeeEEEEEEECCC
Confidence 477899999999882 2789988865 4455678899999998
No 174
>PRK10220 hypothetical protein; Provisional
Probab=83.27 E-value=0.57 Score=36.81 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=21.4
Q ss_pred cccccccccchhhccccccccccccCCCCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
.||+|+....++| ..+++||.|.|.....
T Consensus 5 ~CP~C~seytY~d--~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 5 HCPKCNSEYTYED--NGMYICPECAHEWNDA 33 (111)
T ss_pred cCCCCCCcceEcC--CCeEECCcccCcCCcc
Confidence 7999996444433 3579999999986544
No 175
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.02 E-value=0.53 Score=37.07 Aligned_cols=30 Identities=13% Similarity=-0.050 Sum_probs=25.0
Q ss_pred hhcccccccccchhhccccccccccccCCCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQI 59 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~ 59 (286)
-..||.|++..| +|.+.--|||+|+...+.
T Consensus 9 KridPetg~KFY--DLNrdPiVsPytG~s~P~ 38 (129)
T COG4530 9 KRIDPETGKKFY--DLNRDPIVSPYTGKSYPR 38 (129)
T ss_pred cccCccccchhh--ccCCCccccCcccccchH
Confidence 346999999999 678888999999998643
No 176
>PRK00420 hypothetical protein; Validated
Probab=82.58 E-value=0.6 Score=37.11 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=23.6
Q ss_pred hhcccccccccchhhccccccccccccCCCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQI 59 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~ 59 (286)
-..||.|+.++++- .....+||.|+..-..
T Consensus 23 ~~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 23 SKHCPVCGLPLFEL--KDGEVVCPVHGKVYIV 52 (112)
T ss_pred cCCCCCCCCcceec--CCCceECCCCCCeeee
Confidence 46899999999972 4467999999986444
No 177
>PF14353 CpXC: CpXC protein
Probab=81.98 E-value=0.55 Score=37.82 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=11.6
Q ss_pred cccccccccCCCCCCH
Q psy5220 46 NQQVCTKCDYHMQIKA 61 (286)
Q Consensus 46 ~~~vc~~~~~~~~~~a 61 (286)
+..+||+|++.++++.
T Consensus 37 ~~~~CP~Cg~~~~~~~ 52 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEY 52 (128)
T ss_pred CEEECCCCCCceecCC
Confidence 3678888888876543
No 178
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=81.42 E-value=0.56 Score=29.44 Aligned_cols=29 Identities=38% Similarity=0.626 Sum_probs=18.4
Q ss_pred hcccccccccchhh--cccc--ccccccccCCC
Q psy5220 29 IKCLSCKTILYKND--LKFN--QQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~--l~~~--~~vc~~~~~~~ 57 (286)
.+||+|++..+.++ +... .-.||+|++.+
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVW 35 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEE
Confidence 57999998555442 2221 35799998763
No 179
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=80.84 E-value=0.61 Score=29.98 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=18.8
Q ss_pred cccccccccchhhccc-cccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKF-NQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~-~~~vc~~~~~~ 56 (286)
+||+|+..+-...+.. ...+||+|+--
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~ 28 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGI 28 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeE
Confidence 6999998665554433 46779988764
No 180
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=80.32 E-value=0.73 Score=38.20 Aligned_cols=31 Identities=16% Similarity=0.390 Sum_probs=19.2
Q ss_pred hhhhcccccccccchhhccccc-----cccccccCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQ-----QVCTKCDYH 56 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~-----~vc~~~~~~ 56 (286)
+..-.||.|+......+...+. ..||.|+..
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~ 132 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEE 132 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCE
Confidence 4456788887655544433344 778888775
No 181
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=78.98 E-value=1.1 Score=37.63 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=21.2
Q ss_pred hhhhcccccccccchhhccccccccccccCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
+.+=.||.|+....-.|-..+.+.||.|+..
T Consensus 107 ~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 107 NMFFICPNMCVRFTFNEAMELNFTCPRCGAM 137 (158)
T ss_pred CCeEECCCCCcEeeHHHHHHcCCcCCCCCCE
Confidence 4555688888655555555567888888776
No 182
>PRK06386 replication factor A; Reviewed
Probab=78.79 E-value=0.32 Score=46.27 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=29.5
Q ss_pred chhhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCc
Q psy5220 25 KGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73 (286)
Q Consensus 25 ~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs 73 (286)
.++..+||.|++.+-. ..||.|+. -.....-|+...+|+|+
T Consensus 233 sgli~rCP~C~R~l~~-------g~C~~HG~-v~~~~dlr~k~vLDDGt 273 (358)
T PRK06386 233 SRIFTKCSVCNKIIED-------GVCKDHPD-APVYLDIFGYFTISDGT 273 (358)
T ss_pred cEeEecCcCCCeEccC-------CcCCCCCC-CCCeeEEEEEEEEECCC
Confidence 5778999999988763 47877665 23444456667899988
No 183
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=77.58 E-value=0.87 Score=27.13 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=16.6
Q ss_pred hcccccccccchhhc-cccccccccccC
Q psy5220 29 IKCLSCKTILYKNDL-KFNQQVCTKCDY 55 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l-~~~~~vc~~~~~ 55 (286)
.+|+.|...+-...+ .++.+.||+|.+
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCcC
Confidence 489999988766544 347899999854
No 184
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=77.02 E-value=0.68 Score=31.40 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=20.8
Q ss_pred hcccccccccch-hhccccccccccccCCC
Q psy5220 29 IKCLSCKTILYK-NDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~-~~l~~~~~vc~~~~~~~ 57 (286)
++|++|++.+.+ .+.....-.||+|+.-.
T Consensus 5 iRC~~CnklLa~~g~~~~leIKCpRC~tiN 34 (51)
T PF10122_consen 5 IRCGHCNKLLAKAGEVIELEIKCPRCKTIN 34 (51)
T ss_pred eeccchhHHHhhhcCccEEEEECCCCCccc
Confidence 578888888887 35555566788887643
No 185
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=76.85 E-value=1.6 Score=37.44 Aligned_cols=32 Identities=13% Similarity=0.370 Sum_probs=21.7
Q ss_pred hhhhcccccccccchhhccccccccccccCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
+.+=.||.|+......|-..+.+.||.|+...
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L 146 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAMEYGFRCPQCGEML 146 (178)
T ss_pred CCEEECCCCCcEEeHHHHhhcCCcCCCCCCCC
Confidence 45567888886555555555678888888763
No 186
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=76.72 E-value=1.3 Score=42.36 Aligned_cols=36 Identities=22% Similarity=0.575 Sum_probs=29.5
Q ss_pred CCCCchhhhcccccccccchhhccc-cccccccccCC
Q psy5220 21 KSIPKGLWIKCLSCKTILYKNDLKF-NQQVCTKCDYH 56 (286)
Q Consensus 21 ~~~~~~~~~~c~~c~~~~~~~~l~~-~~~vc~~~~~~ 56 (286)
.+.|.+.-.+||+|+-.+.-+.|.. ....||+|+|.
T Consensus 11 ~~~~~~~~~~C~eCd~~~~~P~l~~~q~A~CPRC~~~ 47 (418)
T COG2995 11 EELPPGHLILCPECDMLVSLPRLDSGQSAYCPRCGHT 47 (418)
T ss_pred ccCCccceecCCCCCceeccccCCCCCcccCCCCCCc
Confidence 3457788999999999888887776 46789999987
No 187
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=76.07 E-value=0.92 Score=27.52 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=15.2
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-|+.|+.++...+- ....+||.|++.
T Consensus 5 fC~~CG~~t~~~~~-g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG-GWARRCPSCGHE 30 (32)
T ss_dssp B-TTT--BEEE-SS-SS-EEESSSS-E
T ss_pred ccCcCCccccCCCC-cCEeECCCCcCE
Confidence 58999988777653 357899999875
No 188
>PRK12366 replication factor A; Reviewed
Probab=75.99 E-value=0.38 Score=49.36 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=32.9
Q ss_pred hhhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCc
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs 73 (286)
.++..||.|++.+.. ....+.||+|+.. ...-+-+|...+|++|
T Consensus 530 ~~y~aCp~CnkKv~~---~~g~~~C~~c~~~-~p~~~~~l~~~i~D~T 573 (637)
T PRK12366 530 IILYLCPNCRKRVEE---VDGEYICEFCGEV-EPNELLMLNFTLDDGT 573 (637)
T ss_pred EEEecccccCeEeEc---CCCcEECCCCCCC-CCcEEEEEEEEEEcCC
Confidence 467899999998864 2467999999987 4444456677788777
No 189
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=74.42 E-value=1.6 Score=30.41 Aligned_cols=26 Identities=23% Similarity=0.590 Sum_probs=19.5
Q ss_pred hhhhcccccccccchhhccccccccccccCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
...+.||.|++..- ...+||.|+++.
T Consensus 25 ~~l~~C~~CG~~~~------~H~vC~~CG~Y~ 50 (57)
T PRK12286 25 PGLVECPNCGEPKL------PHRVCPSCGYYK 50 (57)
T ss_pred CcceECCCCCCccC------CeEECCCCCcCC
Confidence 34578999996543 478999999863
No 190
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=73.61 E-value=1.7 Score=34.38 Aligned_cols=30 Identities=17% Similarity=0.465 Sum_probs=20.9
Q ss_pred hhhcccccccccchhhccccccccccccCCCCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQI 59 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~ 59 (286)
.-++||+|++..-- |.+ ...|..|+++-.+
T Consensus 68 v~V~CP~C~K~TKm--LGr-~D~CM~C~~pLTL 97 (114)
T PF11023_consen 68 VQVECPNCGKQTKM--LGR-VDACMHCKEPLTL 97 (114)
T ss_pred eeeECCCCCChHhh--hch-hhccCcCCCcCcc
Confidence 34679999986533 233 4689999998443
No 191
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=72.77 E-value=1.7 Score=28.18 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.6
Q ss_pred hhcccccccccchhhcccccccccccc
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCD 54 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~ 54 (286)
-..||.|+.++.+. .....+|+.|+
T Consensus 17 ~~~Cp~C~~PL~~~--k~g~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMRD--KDGKIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEEe--cCCCEECCCCC
Confidence 46899999999983 34568899885
No 192
>PRK12496 hypothetical protein; Provisional
Probab=72.52 E-value=1.7 Score=36.76 Aligned_cols=27 Identities=33% Similarity=0.746 Sum_probs=19.1
Q ss_pred hhhc-ccccccccchhhccccccccccccCC
Q psy5220 27 LWIK-CLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~-c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.|.+ |+.|++..-. +. ....||.||++
T Consensus 125 ~w~~~C~gC~~~~~~-~~--~~~~C~~CG~~ 152 (164)
T PRK12496 125 KWRKVCKGCKKKYPE-DY--PDDVCEICGSP 152 (164)
T ss_pred eeeEECCCCCccccC-CC--CCCcCCCCCCh
Confidence 5877 9999965432 21 24789999987
No 193
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=72.36 E-value=1.6 Score=29.51 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=19.8
Q ss_pred hcccccccccchhhccccccccccccCCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
=+|-.|++.+.. +-....-.||.|+|+.
T Consensus 7 Y~C~~Cg~~~~~-~~~~~~irCp~Cg~rI 34 (49)
T COG1996 7 YKCARCGREVEL-DQETRGIRCPYCGSRI 34 (49)
T ss_pred EEhhhcCCeeeh-hhccCceeCCCCCcEE
Confidence 379999988832 2233567899999873
No 194
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=72.07 E-value=1.3 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=12.6
Q ss_pred cccccccccchhhc---cccccccccccC
Q psy5220 30 KCLSCKTILYKNDL---KFNQQVCTKCDY 55 (286)
Q Consensus 30 ~c~~c~~~~~~~~l---~~~~~vc~~~~~ 55 (286)
-||+|+.++-..-. .+.-.+||.|++
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCC
Confidence 48888876654311 345678888874
No 195
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=71.85 E-value=2.1 Score=29.57 Aligned_cols=23 Identities=30% Similarity=0.831 Sum_probs=17.4
Q ss_pred hhcccccccccchhhccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
...||.|++.. ....+|+.||++
T Consensus 26 l~~c~~cg~~~------~~H~vc~~cG~y 48 (56)
T PF01783_consen 26 LVKCPNCGEPK------LPHRVCPSCGYY 48 (56)
T ss_dssp EEESSSSSSEE------STTSBCTTTBBS
T ss_pred eeeeccCCCEe------cccEeeCCCCeE
Confidence 37899999543 346999999765
No 196
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=71.33 E-value=1.8 Score=27.80 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=18.0
Q ss_pred ccccccc--ccch-------hhccccccccccccCCCC
Q psy5220 30 KCLSCKT--ILYK-------NDLKFNQQVCTKCDYHMQ 58 (286)
Q Consensus 30 ~c~~c~~--~~~~-------~~l~~~~~vc~~~~~~~~ 58 (286)
+||+|+. .+|. +|-....++|.+|+|+.+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~ 39 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWR 39 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeC
Confidence 6888875 2221 122346889999998743
No 197
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=71.22 E-value=1.8 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.587 Sum_probs=19.8
Q ss_pred hhhccccccc-ccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKT-ILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~-~~~~~~l~~~~~vc~~~~~~ 56 (286)
+..-||+|+. .+... .+...|.+|++.
T Consensus 19 ~~~fCP~Cg~~~m~~~---~~r~~C~~Cgyt 46 (50)
T PRK00432 19 KNKFCPRCGSGFMAEH---LDRWHCGKCGYT 46 (50)
T ss_pred ccCcCcCCCcchhecc---CCcEECCCcCCE
Confidence 4558999998 44443 357899999985
No 198
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=70.76 E-value=1.6 Score=30.10 Aligned_cols=25 Identities=24% Similarity=0.712 Sum_probs=18.8
Q ss_pred hhhcccccccccchhhccccccccccccCCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
-.+.||.|++.. ....+||.|+++.
T Consensus 25 ~l~~C~~cG~~~------~~H~vc~~cG~Y~ 49 (55)
T TIGR01031 25 TLVVCPNCGEFK------LPHRVCPSCGYYK 49 (55)
T ss_pred cceECCCCCCcc------cCeeECCccCeEC
Confidence 456799999643 3479999999763
No 199
>PRK07217 replication factor A; Reviewed
Probab=70.36 E-value=1 Score=42.00 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=31.3
Q ss_pred chhhhcccc--cccccchhhccccccccccccCCCCCCHHHHHHhhcCCCc
Q psy5220 25 KGLWIKCLS--CKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73 (286)
Q Consensus 25 ~~~~~~c~~--c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs 73 (286)
+++..+||. |++.+ . .+.||.|+.- ...-.-||..++|+|+
T Consensus 185 sglI~rCP~~~C~Rvl------~-~g~C~~HG~v-e~~~DLrik~vlDDGt 227 (311)
T PRK07217 185 SGLIKRCPEEDCTRVL------Q-NGRCSEHGKV-EGEFDLRIKGVLDDGE 227 (311)
T ss_pred CCCeecCCccccCccc------c-CCCCCCCCCc-CCceeeEEEEEEECCC
Confidence 467799999 99888 1 3688877754 3455568899999998
No 200
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=69.98 E-value=1.9 Score=34.29 Aligned_cols=34 Identities=26% Similarity=0.610 Sum_probs=25.8
Q ss_pred hcccccccccchhh-ccccccccccccCCCCCCHH
Q psy5220 29 IKCLSCKTILYKND-LKFNQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 29 ~~c~~c~~~~~~~~-l~~~~~vc~~~~~~~~~~ar 62 (286)
.-||+|+.+++.+. -..+..+|++|+|....+.+
T Consensus 3 ~FCp~Cgsll~p~~~~~~~~l~C~kCgye~~~~~~ 37 (113)
T COG1594 3 RFCPKCGSLLYPKKDDEGGKLVCRKCGYEEEASNK 37 (113)
T ss_pred cccCCccCeeEEeEcCCCcEEECCCCCcchhcccc
Confidence 46999999888753 23458999999999766543
No 201
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=69.36 E-value=1.1 Score=28.60 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=14.6
Q ss_pred hccccccc--ccch-------hhccccccccccccCCC
Q psy5220 29 IKCLSCKT--ILYK-------NDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~--~~~~-------~~l~~~~~vc~~~~~~~ 57 (286)
++||+|+. ..|. ++-....++|.+|+|+.
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 46888885 2221 12223577888888763
No 202
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=69.14 E-value=34 Score=32.06 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=62.3
Q ss_pred EEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCC
Q psy5220 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIP 197 (286)
Q Consensus 118 ~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP 197 (286)
.++|.||+|.-.- +...- ++-.++ ....+..++++..-||+-. ..+++.+..|++.+.-
T Consensus 86 sL~G~PVvV~~LH---------S~Lp~-~~a~~k-~~~p~~riaYIMtDggALP----------~~fS~~v~~Lk~~g~l 144 (320)
T PF12982_consen 86 SLDGMPVVVAELH---------SMLPP-IAAGLK-ALRPDARIAYIMTDGGALP----------LAFSRTVAELKEKGLL 144 (320)
T ss_pred CCCCCEEEEEech---------hhHHH-HHHHHH-HhCCCCeEEEEEeCCcCcc----------HHHHHHHHHHHhCCce
Confidence 6899999986543 22211 112222 2357788888877666654 2344556777777777
Q ss_pred EEEEEcCCcchhhhh--------hc---cccccEEEEcC-------CcEEEeeChhh
Q psy5220 198 FISVLTNPTMGGVSA--------SF---AFMGDIVIAEP-------GALIGFAGPRV 236 (286)
Q Consensus 198 ~Isvv~g~~~GGg~~--------s~---a~~~d~via~~-------~A~i~~~gp~v 236 (286)
--+|-+|.++||-.- .. .+.+|++|... +..+||+|-+.
T Consensus 145 ~~tIT~GqAFGGD~EaVni~t~LlaA~~v~~ADv~iV~~GPGivGTGT~~GFSGv~~ 201 (320)
T PF12982_consen 145 DATITCGQAFGGDLEAVNIYTALLAARHVLKADVAIVAMGPGIVGTGTKWGFSGVEQ 201 (320)
T ss_pred eeeEEeccccCCchhhhhHHHHHHHHHHHhCCCEEEEecCCCccCCCCCCcccHHHH
Confidence 778889999999621 01 14678888643 36788888765
No 203
>PRK05978 hypothetical protein; Provisional
Probab=68.84 E-value=2.7 Score=35.02 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=23.5
Q ss_pred chhhhccccccc-ccchhhccccccccccccCC
Q psy5220 25 KGLWIKCLSCKT-ILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 25 ~~~~~~c~~c~~-~~~~~~l~~~~~vc~~~~~~ 56 (286)
.++--|||+|++ .+|+.- .+-...|+.|+..
T Consensus 30 rGl~grCP~CG~G~LF~g~-Lkv~~~C~~CG~~ 61 (148)
T PRK05978 30 RGFRGRCPACGEGKLFRAF-LKPVDHCAACGED 61 (148)
T ss_pred HHHcCcCCCCCCCcccccc-cccCCCccccCCc
Confidence 466789999998 666644 3456889999876
No 204
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=68.65 E-value=2.4 Score=32.71 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=22.3
Q ss_pred cccccccccchhhccccccccccccCCCCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
-||.|+.+++.+ .+...|+.|++....+
T Consensus 2 fC~~Cg~~l~~~---~~~~~C~~C~~~~~~~ 29 (104)
T TIGR01384 2 FCPKCGSLMTPK---NGVYVCPSCGYEKEKK 29 (104)
T ss_pred CCcccCcccccC---CCeEECcCCCCccccc
Confidence 599999999874 3578999999885543
No 205
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=68.26 E-value=2.5 Score=33.60 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=19.9
Q ss_pred hhhcccccccccchhhccccccccccccCCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.-.+|+.|++..... .+...||+|+.+.
T Consensus 69 ~~~~C~~Cg~~~~~~---~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 69 VECECEDCSEEVSPE---IDLYRCPKCHGIM 96 (115)
T ss_pred cEEEcccCCCEEecC---CcCccCcCCcCCC
Confidence 346899999655443 3467899999763
No 206
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=68.25 E-value=2.5 Score=33.53 Aligned_cols=27 Identities=15% Similarity=0.425 Sum_probs=19.0
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.-.+|+.|++..... .+...||+|+.+
T Consensus 69 ~~~~C~~Cg~~~~~~---~~~~~CP~Cgs~ 95 (113)
T PRK12380 69 AQAWCWDCSQVVEIH---QHDAQCPHCHGE 95 (113)
T ss_pred cEEEcccCCCEEecC---CcCccCcCCCCC
Confidence 345899999655443 345679999976
No 207
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=67.92 E-value=2.5 Score=34.88 Aligned_cols=69 Identities=13% Similarity=0.301 Sum_probs=40.9
Q ss_pred hhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNT 106 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~ 106 (286)
+-+||++|+...+-+ ...||+|+....+ +.+ .|-+.|...-+-... ..|-.|.+
T Consensus 28 ~g~kC~~CG~v~~PP-----r~~Cp~C~~~~~~---E~v-els~~G~V~t~Tv~~--~~~~~~~~--------------- 81 (140)
T COG1545 28 LGTKCKKCGRVYFPP-----RAYCPKCGSETEL---EWV-ELSGEGKVETYTVVY--VKPPGFSL--------------- 81 (140)
T ss_pred EEEEcCCCCeEEcCC-----cccCCCCCCCCce---EEE-EeCCCeEEEEEEEEe--eCCCCccc---------------
Confidence 468999999888875 4789999988411 111 345555533332211 12223432
Q ss_pred CCCCcEEEEEEEEcCee
Q psy5220 107 NETDALIVIKGSIMNLP 123 (286)
Q Consensus 107 ~~~~~vvtG~g~i~G~~ 123 (286)
..-.+.|..++++-.
T Consensus 82 --~~P~viaiV~l~~~~ 96 (140)
T COG1545 82 --EEPYVIAIVELEEGG 96 (140)
T ss_pred --CCCEEEEEEEeCCCC
Confidence 356688888887433
No 208
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=67.33 E-value=2.1 Score=37.22 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=18.8
Q ss_pred hcccccccccchhhcccc-----------ccccccccCCC
Q psy5220 29 IKCLSCKTILYKNDLKFN-----------QQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~-----------~~vc~~~~~~~ 57 (286)
+.||.|++.....-+..+ ...|++|||+.
T Consensus 1 ~~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~ 40 (192)
T TIGR00310 1 IDCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRS 40 (192)
T ss_pred CcCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCcc
Confidence 369999864333222222 67899999983
No 209
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=66.94 E-value=3.3 Score=29.35 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.1
Q ss_pred hhhhcccccccccchhhccccccccccccCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
..-..||.|+...-. .+......||.|++..
T Consensus 26 ~TSq~C~~CG~~~~~-~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 26 YTSQTCPRCGHRNKK-RRSGRVFTCPNCGFEM 56 (69)
T ss_pred CCccCccCccccccc-ccccceEEcCCCCCEE
Confidence 345689999987776 4556689999999874
No 210
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=66.63 E-value=2.6 Score=40.92 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=30.6
Q ss_pred hcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKN 72 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~g 72 (286)
.+||.|+..+-.. .+|.+-|++|+++.+-+...-+..=+++|
T Consensus 351 p~Cp~Cg~~m~S~--G~~g~rC~kCg~~~~~~~~~~v~r~l~~g 392 (421)
T COG1571 351 PVCPRCGGRMKSA--GRNGFRCKKCGTRARETLIKEVPRDLEPG 392 (421)
T ss_pred CCCCccCCchhhc--CCCCcccccccccCCcccccccccccCCC
Confidence 4899999887765 56699999999997766555444444444
No 211
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=66.49 E-value=3.2 Score=40.29 Aligned_cols=33 Identities=18% Similarity=0.541 Sum_probs=24.2
Q ss_pred Cchhhhcccccccccchhhcccc-ccccccccCC
Q psy5220 24 PKGLWIKCLSCKTILYKNDLKFN-QQVCTKCDYH 56 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~~~~~l~~~-~~vc~~~~~~ 56 (286)
|+.-...||.|+...-.+.+..+ ...||+||+.
T Consensus 9 ~~~~~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~ 42 (403)
T TIGR00155 9 PAAKHILCSQCDMLVALPRIESGQKAACPRCGTT 42 (403)
T ss_pred CCCCeeeCCCCCCcccccCCCCCCeeECCCCCCC
Confidence 44446789999987776666653 4579999876
No 212
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=66.27 E-value=3.1 Score=34.05 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=19.4
Q ss_pred hhcccccccccchh------------------hccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKN------------------DLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~------------------~l~~~~~vc~~~~~~ 56 (286)
.-+|+.|+...... ++......||+|+.+
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~ 116 (135)
T PRK03824 70 VLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSR 116 (135)
T ss_pred EEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCC
Confidence 34899999654332 122456779999976
No 213
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=65.92 E-value=3 Score=29.04 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=18.9
Q ss_pred hhcccccccccchhhccccccccccccCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
..+|++||+.... ..+|+.|+++.
T Consensus 27 ~~~c~~cG~~~l~------Hrvc~~cg~Y~ 50 (57)
T COG0333 27 LSVCPNCGEYKLP------HRVCLKCGYYK 50 (57)
T ss_pred ceeccCCCCcccC------ceEcCCCCCcc
Confidence 6899999975543 68999999763
No 214
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=65.82 E-value=3 Score=35.07 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=17.9
Q ss_pred hccccccccc-------chhh--ccccccccccccCCC
Q psy5220 29 IKCLSCKTIL-------YKND--LKFNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~-------~~~~--l~~~~~vc~~~~~~~ 57 (286)
.+||.|+.+- |-.+ +.+..+.||+|+..+
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 3899999532 2222 122238899999873
No 215
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=64.72 E-value=3.2 Score=27.99 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=20.1
Q ss_pred hhcccccccccchhhccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-..||+|+.-++-.+ ..+-+.|-+|++-
T Consensus 19 ~~~CPrCG~gvfmA~-H~dR~~CGkCgyT 46 (51)
T COG1998 19 NRFCPRCGPGVFMAD-HKDRWACGKCGYT 46 (51)
T ss_pred cccCCCCCCcchhhh-cCceeEeccccce
Confidence 458999997555544 3347899999875
No 216
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=64.09 E-value=2.9 Score=34.54 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=20.9
Q ss_pred Cchhhhcccccccccc---hhhc-----------cccccccccccCC
Q psy5220 24 PKGLWIKCLSCKTILY---KNDL-----------KFNQQVCTKCDYH 56 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~~---~~~l-----------~~~~~vc~~~~~~ 56 (286)
++..+++|+.|+..+- .+++ ....+.||.|++-
T Consensus 87 ~~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~ki 133 (147)
T PF01927_consen 87 LDPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKI 133 (147)
T ss_pred cCCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCE
Confidence 4556889999997553 2222 1237889999753
No 217
>KOG2907|consensus
Probab=63.90 E-value=3 Score=33.04 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=20.8
Q ss_pred hhhhccccccc--ccchh-hcc------ccccccccccCCCC
Q psy5220 26 GLWIKCLSCKT--ILYKN-DLK------FNQQVCTKCDYHMQ 58 (286)
Q Consensus 26 ~~~~~c~~c~~--~~~~~-~l~------~~~~vc~~~~~~~~ 58 (286)
-+-.|||+|+. +.|.- +|. .-++-||+|.|++.
T Consensus 72 ~I~~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~ 113 (116)
T KOG2907|consen 72 VIKHKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFT 113 (116)
T ss_pred chhccCcccCCchhhhhhhhcccccCCceEEEEcCccceeee
Confidence 35678999985 44431 111 13678999988754
No 218
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=63.16 E-value=3.9 Score=32.47 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=18.8
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.-.+|+.|++.....+ .....||+|+.+
T Consensus 69 ~~~~C~~Cg~~~~~~~--~~~~~CP~Cgs~ 96 (114)
T PRK03681 69 AECWCETCQQYVTLLT--QRVRRCPQCHGD 96 (114)
T ss_pred cEEEcccCCCeeecCC--ccCCcCcCcCCC
Confidence 3458999996544422 233679999976
No 219
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=62.87 E-value=3.8 Score=32.67 Aligned_cols=28 Identities=25% Similarity=0.699 Sum_probs=18.4
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.-.+|+.|+......+ ..+..||+|+.+
T Consensus 70 ~~~~C~~Cg~~~~~~~--~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNA--LDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCC--ccCCcCcCCCCC
Confidence 4468999995443322 234459999987
No 220
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=62.48 E-value=4.5 Score=40.91 Aligned_cols=50 Identities=16% Similarity=0.430 Sum_probs=30.6
Q ss_pred hhhcccccccccchh--hc--------cccccccccccCCCCCCHHHHHHhhcCCCceEEecC
Q psy5220 27 LWIKCLSCKTILYKN--DL--------KFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGE 79 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~--~l--------~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~ 79 (286)
.+..||+|++...-+ ++ +.-.++||.|++. ++-+++..++ -.|-|..-..
T Consensus 199 ~~vpCPhCg~~~~l~~~~l~w~~~~~~~~a~y~C~~Cg~~--i~e~~k~~m~-~~G~Wv~~~~ 258 (557)
T PF05876_consen 199 YYVPCPHCGEEQVLEWENLKWDKGEAPETARYVCPHCGCE--IEEHDKRRMV-RRGRWVATNP 258 (557)
T ss_pred EEccCCCCCCCccccccceeecCCCCccceEEECCCCcCC--CCHHHHhhcc-CCeEEEeccc
Confidence 468999999732221 12 2357899999987 6666666543 4454544433
No 221
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=62.08 E-value=3.3 Score=31.29 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=21.9
Q ss_pred hcccccccccchhhccccccccccccCCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
..||.|+...-+ -+...-+.|.+|++.+
T Consensus 36 ~~Cp~C~~~~Vk-R~a~GIW~C~kCg~~f 63 (89)
T COG1997 36 HVCPFCGRTTVK-RIATGIWKCRKCGAKF 63 (89)
T ss_pred CcCCCCCCccee-eeccCeEEcCCCCCee
Confidence 479999988554 4566789999999874
No 222
>PHA02998 RNA polymerase subunit; Provisional
Probab=61.30 E-value=4.8 Score=34.52 Aligned_cols=37 Identities=16% Similarity=0.428 Sum_probs=24.3
Q ss_pred Cchhhhcccccccc-cc--------hhhccccccccccccCCCCCC
Q psy5220 24 PKGLWIKCLSCKTI-LY--------KNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 24 ~~~~~~~c~~c~~~-~~--------~~~l~~~~~vc~~~~~~~~~~ 60 (286)
|...-.+||+|+.. .+ ..|-....+.|.+|+++.+++
T Consensus 139 pkkt~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp 184 (195)
T PHA02998 139 DEKYNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP 184 (195)
T ss_pred CcccCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence 43356799999961 11 223334578999999997654
No 223
>PRK08402 replication factor A; Reviewed
Probab=61.24 E-value=1.3 Score=42.22 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=32.0
Q ss_pred hhhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCc
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs 73 (286)
++..||.|++.+-.++ ..+.+.|+.|+.. ...-|-++...+|++|
T Consensus 211 ~y~aCp~CnKkv~~~~-~~~~~~Ce~~~~v-~p~~ryil~~~l~D~T 255 (355)
T PRK08402 211 VYDACPECRRKVDYDP-ATDTWICPEHGEV-EPIKITILDFGLDDGT 255 (355)
T ss_pred eEecCCCCCeEEEEec-CCCCEeCCCCCCc-CcceeEEEEEEEEcCC
Confidence 5689999999886433 3356899988753 3455566777788876
No 224
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=60.98 E-value=3.9 Score=28.66 Aligned_cols=31 Identities=26% Similarity=0.703 Sum_probs=21.2
Q ss_pred hccccccc----ccchhhccccccccccccCCCCCC
Q psy5220 29 IKCLSCKT----ILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 29 ~~c~~c~~----~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
-+||+|+. .+|.++ .-.+--|-.|+|+.+.+
T Consensus 10 A~CP~C~~~Dtl~~~~e~-~~e~vECv~Cg~~~~~~ 44 (59)
T TIGR02443 10 AVCPACSAQDTLAMWKEN-NIELVECVECGYQEQQK 44 (59)
T ss_pred ccCCCCcCccEEEEEEeC-CceEEEeccCCCccccC
Confidence 47999997 455543 33467799999986543
No 225
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=60.93 E-value=3.4 Score=32.68 Aligned_cols=28 Identities=14% Similarity=0.406 Sum_probs=18.3
Q ss_pred hhhcccccccccchhhccccccccccccCCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.-.+|..|+.....++ ....||+|+.+.
T Consensus 69 ~~~~C~~Cg~~~~~~~---~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDE---FDFSCPRCGSPD 96 (113)
T ss_dssp -EEEETTTS-EEECHH---CCHH-SSSSSS-
T ss_pred CcEECCCCCCEEecCC---CCCCCcCCcCCC
Confidence 3468999997766543 347899999873
No 226
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=60.74 E-value=3.4 Score=25.75 Aligned_cols=24 Identities=25% Similarity=0.729 Sum_probs=14.8
Q ss_pred hhhcccccccccchhhccccccccccccC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDY 55 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~ 55 (286)
+-++|++|+...|.+ ..+||+|+.
T Consensus 10 ~~~rC~~Cg~~~~pP-----r~~Cp~C~s 33 (37)
T PF12172_consen 10 LGQRCRDCGRVQFPP-----RPVCPHCGS 33 (37)
T ss_dssp EEEE-TTT--EEES-------SEETTTT-
T ss_pred EEEEcCCCCCEecCC-----CcCCCCcCc
Confidence 357999999988875 378999964
No 227
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=60.60 E-value=4 Score=28.10 Aligned_cols=29 Identities=14% Similarity=0.474 Sum_probs=19.4
Q ss_pred hcccccccccchhhcc-ccccccccccCCC
Q psy5220 29 IKCLSCKTILYKNDLK-FNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~-~~~~vc~~~~~~~ 57 (286)
.+||.|++.+--++.. .-.-.||.|+...
T Consensus 3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGael 32 (54)
T TIGR01206 3 FECPDCGAEIELENPELGELVICDECGAEL 32 (54)
T ss_pred cCCCCCCCEEecCCCccCCEEeCCCCCCEE
Confidence 3799999866554432 2356788888763
No 228
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=60.53 E-value=4 Score=37.33 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=24.7
Q ss_pred hcccccccccchhhcc-ccccccccccCCCCC
Q psy5220 29 IKCLSCKTILYKNDLK-FNQQVCTKCDYHMQI 59 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~-~~~~vc~~~~~~~~~ 59 (286)
..||.|+..+-+..+. +.-+.||.|....++
T Consensus 236 ~pC~~Cg~~I~~~~~~gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 236 QPCPRCGTPIEKIVVGGRGTHFCPQCQPLRPL 267 (269)
T ss_pred CCCCcCCCeeEEEEECCCCcEECCCCcCCCCC
Confidence 4699999988776555 588999999887654
No 229
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=60.42 E-value=3.9 Score=28.11 Aligned_cols=28 Identities=25% Similarity=0.435 Sum_probs=21.3
Q ss_pred hccccccc--ccc-hhhccccccccccccCC
Q psy5220 29 IKCLSCKT--ILY-KNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~--~~~-~~~l~~~~~vc~~~~~~ 56 (286)
.-|++|.. -++ +++.+...++||.|++.
T Consensus 23 LIC~~C~~hNGla~~~~~~~i~y~C~~Cg~~ 53 (54)
T PF10058_consen 23 LICSKCFSHNGLAPKEEFEEIQYRCPYCGAL 53 (54)
T ss_pred EECcccchhhcccccccCCceEEEcCCCCCc
Confidence 45888875 344 67777789999999863
No 230
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=60.23 E-value=3.6 Score=25.83 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=15.2
Q ss_pred hcccccccccchhh--cc--ccccccccccCCC
Q psy5220 29 IKCLSCKTILYKND--LK--FNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~--l~--~~~~vc~~~~~~~ 57 (286)
+.||+|+...--++ |. ...--||+|+|-+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 46777775333222 11 1245677777654
No 231
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=60.13 E-value=3.4 Score=32.38 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=18.9
Q ss_pred cccccccccchhhccccccccccccCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.||+|+..-.++|. .+.+||.|.|..
T Consensus 5 ~cp~c~sEytYed~--~~~~cpec~~ew 30 (112)
T COG2824 5 PCPKCNSEYTYEDG--GQLICPECAHEW 30 (112)
T ss_pred CCCccCCceEEecC--ceEeCchhcccc
Confidence 79999764444443 379999999873
No 232
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=60.10 E-value=4.1 Score=37.45 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=6.1
Q ss_pred CCCcEEEEEEE
Q psy5220 108 ETDALIVIKGS 118 (286)
Q Consensus 108 ~~~~vvtG~g~ 118 (286)
.+..||...-+
T Consensus 143 ~dP~vIv~v~~ 153 (279)
T COG2816 143 IDPCVIVAVIR 153 (279)
T ss_pred CCCeEEEEEec
Confidence 35666665433
No 233
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=60.08 E-value=4.5 Score=26.60 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=14.0
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
+|..|+..+.-++ ...-.||+|+|+
T Consensus 4 ~C~~Cg~~~~~~~--~~~irC~~CG~r 28 (44)
T smart00659 4 ICGECGRENEIKS--KDVVRCRECGYR 28 (44)
T ss_pred ECCCCCCEeecCC--CCceECCCCCce
Confidence 4666666544431 234567777665
No 234
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=59.39 E-value=5 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=16.4
Q ss_pred cccccccccchhh-c-cccccccccccCC
Q psy5220 30 KCLSCKTILYKND-L-KFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~-l-~~~~~vc~~~~~~ 56 (286)
+|++|++...... . ....-.||.|+..
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGGD 35 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCCc
Confidence 7899997432211 1 1346779999873
No 235
>KOG0780|consensus
Probab=59.21 E-value=38 Score=32.98 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=13.7
Q ss_pred CCCCEEEEEcCCcchhhhhh
Q psy5220 194 KKIPFISVLTNPTMGGVSAS 213 (286)
Q Consensus 194 ~~vP~Isvv~g~~~GGg~~s 213 (286)
-+--+|+=+.|.+=|||+.|
T Consensus 242 vg~vIlTKlDGhakGGgAlS 261 (483)
T KOG0780|consen 242 VGAVILTKLDGHAKGGGALS 261 (483)
T ss_pred cceEEEEecccCCCCCceee
Confidence 44456777778888887654
No 236
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=59.04 E-value=4.9 Score=33.45 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=20.0
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-.|.+|+..+.-..-. ..-.||+|++.
T Consensus 113 l~C~~Cg~~~~~~~~~-~l~~Cp~C~~~ 139 (146)
T PF07295_consen 113 LVCENCGHEVELTHPE-RLPPCPKCGHT 139 (146)
T ss_pred EecccCCCEEEecCCC-cCCCCCCCCCC
Confidence 4799999855544433 58999999986
No 237
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=58.37 E-value=4.1 Score=35.23 Aligned_cols=26 Identities=31% Similarity=0.683 Sum_probs=21.7
Q ss_pred hhcccccccccchhhccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.-.|++|...+.+ ..+...||+|++.
T Consensus 149 ~A~CsrC~~~L~~---~~~~l~Cp~Cg~t 174 (188)
T COG1096 149 YARCSRCRAPLVK---KGNMLKCPNCGNT 174 (188)
T ss_pred EEEccCCCcceEE---cCcEEECCCCCCE
Confidence 5789999998888 3467899999875
No 238
>PHA02942 putative transposase; Provisional
Probab=58.13 E-value=4.2 Score=39.17 Aligned_cols=35 Identities=17% Similarity=0.456 Sum_probs=24.3
Q ss_pred CchhhhcccccccccchhhccccccccccccCCCCCC
Q psy5220 24 PKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
|...-..||.|+.... ++....+.||.||+..--|
T Consensus 321 p~yTSq~Cs~CG~~~~--~l~~r~f~C~~CG~~~drD 355 (383)
T PHA02942 321 PSYSSVSCPKCGHKMV--EIAHRYFHCPSCGYENDRD 355 (383)
T ss_pred CCCCCccCCCCCCccC--cCCCCEEECCCCCCEeCcH
Confidence 3344577999997653 4454579999999975433
No 239
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=57.50 E-value=4.4 Score=29.49 Aligned_cols=33 Identities=15% Similarity=0.611 Sum_probs=23.4
Q ss_pred hccccccc----ccchhhccccccccccccCCCCCCHH
Q psy5220 29 IKCLSCKT----ILYKNDLKFNQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 29 ~~c~~c~~----~~~~~~l~~~~~vc~~~~~~~~~~ar 62 (286)
-.||+|+. .+|+++ ...+--|=.|||+...+..
T Consensus 9 a~CP~C~~~D~i~~~~e~-~ve~vECV~CGy~e~~~~~ 45 (71)
T PF09526_consen 9 AVCPKCQAMDTIMMWREN-GVEYVECVECGYTERQPDQ 45 (71)
T ss_pred ccCCCCcCccEEEEEEeC-CceEEEecCCCCeeccCCc
Confidence 47999997 455543 3457789999999766544
No 240
>PRK02935 hypothetical protein; Provisional
Probab=57.44 E-value=6 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=20.8
Q ss_pred hcccccccccchhhccccccccccccCCCCCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
+.||+|+++.-- |.+ -..|..|+.+-.++
T Consensus 71 V~CP~C~K~TKm--LGr-vD~CM~C~~PLTLd 99 (110)
T PRK02935 71 VICPSCEKPTKM--LGR-VDACMHCNQPLTLD 99 (110)
T ss_pred eECCCCCchhhh--ccc-eeecCcCCCcCCcC
Confidence 589999986543 343 57899999985443
No 241
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.39 E-value=4.4 Score=35.76 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=8.6
Q ss_pred ccccccccCCC
Q psy5220 47 QQVCTKCDYHM 57 (286)
Q Consensus 47 ~~vc~~~~~~~ 57 (286)
-.|||+|++..
T Consensus 48 V~vCP~CgyA~ 58 (214)
T PF09986_consen 48 VWVCPHCGYAA 58 (214)
T ss_pred EEECCCCCCcc
Confidence 46899998863
No 242
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.54 E-value=64 Score=32.20 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=15.2
Q ss_pred hccccccccc-chhhccccccccccccCCCC
Q psy5220 29 IKCLSCKTIL-YKNDLKFNQQVCTKCDYHMQ 58 (286)
Q Consensus 29 ~~c~~c~~~~-~~~~l~~~~~vc~~~~~~~~ 58 (286)
.+||+|+-.+ |.+ ..|.-.|..|++..+
T Consensus 223 ~~C~~C~~~l~~h~--~~~~l~Ch~Cg~~~~ 251 (505)
T TIGR00595 223 LCCPNCDVSLTYHK--KEGKLRCHYCGYQEP 251 (505)
T ss_pred cCCCCCCCceEEec--CCCeEEcCCCcCcCC
Confidence 4688888544 333 234455555555543
No 243
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=55.35 E-value=5.4 Score=43.68 Aligned_cols=21 Identities=38% Similarity=0.890 Sum_probs=12.8
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.+||+|+..++. ..||+|+.+
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~ 688 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTH 688 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCc
Confidence 678888876543 155555555
No 244
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=54.89 E-value=5.7 Score=42.29 Aligned_cols=35 Identities=17% Similarity=0.391 Sum_probs=25.0
Q ss_pred hhcccccccccchhhccccccccccccCCC--------CCCHHHHHHhhc
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHM--------QIKARDRLNNFL 69 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~--------~~~ar~ri~~L~ 69 (286)
..|||+|+...+ ...||+|+.+- +++.++.+..-+
T Consensus 625 ~RKCPkCG~yTl-------k~rCP~CG~~Te~~~pc~~~i~l~~~~~~A~ 667 (1095)
T TIGR00354 625 IRKCPQCGKESF-------WLKCPVCGELTEQLYYGKRKVDLRELYEEAI 667 (1095)
T ss_pred EEECCCCCcccc-------cccCCCCCCccccccceeEEecHHHHHHHHH
Confidence 469999997654 47899999772 566666665433
No 245
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=54.09 E-value=7.9 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=16.6
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
+|+.|+... ..+ .....||.|+..
T Consensus 3 ~C~~CGy~y-~~~--~~~~~CP~Cg~~ 26 (33)
T cd00350 3 VCPVCGYIY-DGE--EAPWVCPVCGAP 26 (33)
T ss_pred ECCCCCCEE-CCC--cCCCcCcCCCCc
Confidence 699999543 322 246899999875
No 246
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=53.74 E-value=6.8 Score=33.33 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=20.2
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.| .||.||.+... + .-.+||.|++.
T Consensus 134 ~~-vC~vCGy~~~g-e---~P~~CPiCga~ 158 (166)
T COG1592 134 VW-VCPVCGYTHEG-E---APEVCPICGAP 158 (166)
T ss_pred EE-EcCCCCCcccC-C---CCCcCCCCCCh
Confidence 47 59999988876 2 46899999986
No 247
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=53.12 E-value=6.6 Score=29.15 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=21.5
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.+||-|+.......-...+.+||.|.=.
T Consensus 2 ~~CPCCg~~Tl~~~~~~~ydIC~VC~WE 29 (78)
T PF14206_consen 2 YPCPCCGYYTLEERGEGTYDICPVCFWE 29 (78)
T ss_pred ccCCCCCcEEeccCCCcCceECCCCCcc
Confidence 3799999888876544458999999654
No 248
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=52.38 E-value=6 Score=27.09 Aligned_cols=31 Identities=19% Similarity=0.500 Sum_probs=23.1
Q ss_pred hhhccc--ccccccchh-hccccccccccccCCC
Q psy5220 27 LWIKCL--SCKTILYKN-DLKFNQQVCTKCDYHM 57 (286)
Q Consensus 27 ~~~~c~--~c~~~~~~~-~l~~~~~vc~~~~~~~ 57 (286)
.+..|| +|+..+... +.......||+|++.+
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~f 50 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSF 50 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeE
Confidence 567899 899888876 3345678898888764
No 249
>PF12773 DZR: Double zinc ribbon
Probab=52.29 E-value=6.9 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=18.1
Q ss_pred hhcccccccccchhhccccccccccccCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
...|+.|+..+... .....+||+|++..
T Consensus 12 ~~fC~~CG~~l~~~--~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 12 AKFCPHCGTPLPPP--DQSKKICPNCGAEN 39 (50)
T ss_pred ccCChhhcCChhhc--cCCCCCCcCCcCCC
Confidence 45688888777722 22357788887763
No 250
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=52.09 E-value=6.5 Score=28.05 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=6.8
Q ss_pred cccccccccch
Q psy5220 30 KCLSCKTILYK 40 (286)
Q Consensus 30 ~c~~c~~~~~~ 40 (286)
+||+|+..-|.
T Consensus 2 ~C~KCg~~~~e 12 (64)
T PF09855_consen 2 KCPKCGNEEYE 12 (64)
T ss_pred CCCCCCCccee
Confidence 57777765443
No 251
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=51.70 E-value=9.1 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=17.2
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
+|+.||.+...++ .-.+||.|++.
T Consensus 4 ~C~~CG~i~~g~~---~p~~CP~Cg~~ 27 (34)
T cd00729 4 VCPVCGYIHEGEE---APEKCPICGAP 27 (34)
T ss_pred ECCCCCCEeECCc---CCCcCcCCCCc
Confidence 6999996654322 35799999985
No 252
>PRK11032 hypothetical protein; Provisional
Probab=51.41 E-value=7.7 Score=32.80 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=19.2
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-.|.+|+..+.-.. -...-.||+|++.
T Consensus 125 LvC~~Cg~~~~~~~-p~~i~pCp~C~~~ 151 (160)
T PRK11032 125 LVCEKCHHHLAFYT-PEVLPLCPKCGHD 151 (160)
T ss_pred EEecCCCCEEEecC-CCcCCCCCCCCCC
Confidence 47999997444322 2358899999986
No 253
>PRK09932 glycerate kinase II; Provisional
Probab=51.11 E-value=13 Score=35.91 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 108 ETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 108 ~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
..|=||||.|++|.++.. | .-.....++|.+.++|+|.++.+
T Consensus 284 ~ADlVITGEG~~D~Qt~~----------G-------K~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 284 GAALVITGEGRIDSQTAG----------G-------KAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred cCCEEEECCCcccccccC----------C-------ccHHHHHHHHHHcCCCEEEEecc
Confidence 478899999999887543 2 12456677889999999999886
No 254
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=50.89 E-value=6.1 Score=24.32 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=18.4
Q ss_pred cccccccc-cchhhccccccccccccCCC
Q psy5220 30 KCLSCKTI-LYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 30 ~c~~c~~~-~~~~~l~~~~~vc~~~~~~~ 57 (286)
+|+.|+.. ++.+ +..+.+|+.|+.-+
T Consensus 5 ~C~~C~~~~i~~~--~~~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 5 KCSKCGGNGIVNK--EDDYEVCIFCGSSF 31 (33)
T ss_pred EcCCCCCCeEEEe--cCCeEEcccCCcEe
Confidence 79999863 4423 35689999998754
No 255
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=50.46 E-value=7.8 Score=25.40 Aligned_cols=30 Identities=27% Similarity=0.577 Sum_probs=19.1
Q ss_pred Cchhhhcccccccccchhhcc-ccccccccccCC
Q psy5220 24 PKGLWIKCLSCKTILYKNDLK-FNQQVCTKCDYH 56 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~~~~~l~-~~~~vc~~~~~~ 56 (286)
|++ ..||.|+..-+.. +. ...+.|-.|+++
T Consensus 16 ~~g--~~CP~Cg~~~~~~-~~~~~~~~C~~C~~q 46 (46)
T PF12760_consen 16 PDG--FVCPHCGSTKHYR-LKTRGRYRCKACRKQ 46 (46)
T ss_pred CCC--CCCCCCCCeeeEE-eCCCCeEECCCCCCc
Confidence 444 4599999743332 23 367888888874
No 256
>KOG0073|consensus
Probab=50.02 E-value=32 Score=29.42 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=50.6
Q ss_pred EEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHh
Q psy5220 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177 (286)
Q Consensus 118 ~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~ 177 (286)
++-|.++.|+||-.. ..|++......++..+-+++...++|++....-.|-++.+|+.-
T Consensus 114 rlaG~~~Lvlank~d-l~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQD-LPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred hhcCCceEEEEecCc-CccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 577889999888554 34999999999999999999999999999999888888888653
No 257
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=49.97 E-value=6.7 Score=33.23 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=18.4
Q ss_pred hhcccccccccc---hhhc-----------cccccccccccCC
Q psy5220 28 WIKCLSCKTILY---KNDL-----------KFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~---~~~l-----------~~~~~vc~~~~~~ 56 (286)
..+||.|+..+- +++. ....+.||+|+.-
T Consensus 97 ~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~Cgki 139 (165)
T COG1656 97 FSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKI 139 (165)
T ss_pred cccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCccc
Confidence 578999987443 2221 1236779999765
No 258
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=49.86 E-value=6.3 Score=23.26 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=10.6
Q ss_pred cccccccccchhhccccccccc
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCT 51 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~ 51 (286)
.||.|+..+.+.+=+. ...|+
T Consensus 1 ~CP~C~s~l~~~~~ev-~~~C~ 21 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEV-DIRCP 21 (28)
T ss_dssp B-TTT--BEEE-CCTT-CEEE-
T ss_pred CcCCCCCEeEcCCCCE-eEECC
Confidence 5999999988765333 45555
No 259
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=49.84 E-value=11 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=10.5
Q ss_pred ccccccccchhhccccccccccccCC
Q psy5220 31 CLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 31 c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
|.+|+..+.-+. ...-.||.|+|+
T Consensus 3 C~~Cg~~~~~~~--~~~irC~~CG~R 26 (32)
T PF03604_consen 3 CGECGAEVELKP--GDPIRCPECGHR 26 (32)
T ss_dssp ESSSSSSE-BST--SSTSSBSSSS-S
T ss_pred CCcCCCeeEcCC--CCcEECCcCCCe
Confidence 555665444221 123456666665
No 260
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=49.35 E-value=30 Score=33.97 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=58.8
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEc
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLT 203 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~ 203 (286)
+=|+...-.+. |...+..|+++++.+++.+-+=|+++.=||+.+.+- .+++. ..+.+++ ..+.+|+||.|=
T Consensus 163 ~~viv~pt~VQ----G~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDL-W~FNd-E~vaRAi---~~s~iPvISAVG 233 (440)
T COG1570 163 VEVIVYPTLVQ----GEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDL-WAFND-EIVARAI---AASRIPVISAVG 233 (440)
T ss_pred CeEEEEecccc----CCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHH-hccCh-HHHHHHH---HhCCCCeEeecc
Confidence 44445554444 467788999999999999866566666666666331 11211 2233333 357999999763
Q ss_pred CCcchhhhhhcc-ccccEEEEcCCcEEEeeChh
Q psy5220 204 NPTMGGVSASFA-FMGDIVIAEPGALIGFAGPR 235 (286)
Q Consensus 204 g~~~GGg~~s~a-~~~d~via~~~A~i~~~gp~ 235 (286)
..+= ..++ +.+|+.-.+|++-.-+.-|.
T Consensus 234 HEtD----~tL~DfVAD~RApTPTaAAE~~vP~ 262 (440)
T COG1570 234 HETD----FTLADFVADLRAPTPTAAAELVVPD 262 (440)
T ss_pred cCCC----ccHHHhhhhccCCCchHHHHHhCCC
Confidence 3320 1111 35788888998654444443
No 261
>PRK01110 rpmF 50S ribosomal protein L32; Validated
Probab=49.25 E-value=7.9 Score=27.19 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=17.2
Q ss_pred hhcccccccccchhhccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.+.|++|++.... ..+|+ |+++
T Consensus 27 ~~~c~~cg~~~~p------H~vc~-cG~Y 48 (60)
T PRK01110 27 LSVDKTTGEYHLP------HHVSP-KGYY 48 (60)
T ss_pred eeEcCCCCceecc------ceecC-Cccc
Confidence 5789999976554 57899 9965
No 262
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.07 E-value=8.6 Score=40.16 Aligned_cols=53 Identities=19% Similarity=0.405 Sum_probs=32.6
Q ss_pred hhcccccccccchhhccccccccccccCCCCCC--------------------HHHHHHhhcCCCceEEecCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK--------------------ARDRLNNFLDKNNFHEIGENI 81 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~--------------------ar~ri~~L~D~gsf~E~~~~~ 81 (286)
-.+||+|...+-... ..+.-.|..|+|+.++. +.+-+..+|-+-...-++.+.
T Consensus 444 v~~Cp~Cd~~lt~H~-~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dt 516 (730)
T COG1198 444 IAECPNCDSPLTLHK-ATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDT 516 (730)
T ss_pred cccCCCCCcceEEec-CCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEcccc
Confidence 368888886443322 34677777887774432 455666677655566666643
No 263
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=49.05 E-value=8.9 Score=30.60 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=19.1
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
...+|..|+..+-... +.+.||+|+.+
T Consensus 69 ~~~~C~~C~~~~~~e~---~~~~CP~C~s~ 95 (115)
T COG0375 69 AECWCLDCGQEVELEE---LDYRCPKCGSI 95 (115)
T ss_pred cEEEeccCCCeecchh---heeECCCCCCC
Confidence 4457999987776643 33449999965
No 264
>KOG2906|consensus
Probab=48.36 E-value=6.1 Score=30.55 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=23.4
Q ss_pred cccccccccchhhcc-ccccccccccCCCCCC
Q psy5220 30 KCLSCKTILYKNDLK-FNQQVCTKCDYHMQIK 60 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~-~~~~vc~~~~~~~~~~ 60 (286)
-||.|+.++-.+.=+ .|-.-|+.|.|..+++
T Consensus 3 FCP~Cgn~Live~g~~~~rf~C~tCpY~~~I~ 34 (105)
T KOG2906|consen 3 FCPTCGNMLIVESGESCNRFSCRTCPYVFPIS 34 (105)
T ss_pred ccCCCCCEEEEecCCeEeeEEcCCCCceeeEe
Confidence 599999866554323 3788999999998766
No 265
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=48.25 E-value=82 Score=29.91 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=50.5
Q ss_pred cCeeEEEEEEcCcccc-------------------cCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHH
Q psy5220 120 MNLPLVVAVFEFEFMG-------------------GSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180 (286)
Q Consensus 120 ~G~~v~v~a~d~~~~g-------------------Gs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~ 180 (286)
+|.+|+++|-| ||++ +.-|.+-+.=+-++++.|..+++-+|+ +||.| |+|--.-=+.+
T Consensus 166 ~g~~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~Dvvl-iDTAG-RLhnk~nLM~E 242 (340)
T COG0552 166 QGKSVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVL-IDTAG-RLHNKKNLMDE 242 (340)
T ss_pred CCCeEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEE-EeCcc-cccCchhHHHH
Confidence 58899999998 5543 335566666777888888888888765 67777 66542211123
Q ss_pred HHHHHHHHHHHhcCCCCE-EEEEcCCcchhhh
Q psy5220 181 MAKTTAILTKLSKKKIPF-ISVLTNPTMGGVS 211 (286)
Q Consensus 181 ~~~~~~a~~~l~~~~vP~-Isvv~g~~~GGg~ 211 (286)
+.++.+.+.... ..-|. +=++...++|--+
T Consensus 243 L~KI~rV~~k~~-~~ap~e~llvlDAttGqna 273 (340)
T COG0552 243 LKKIVRVIKKDD-PDAPHEILLVLDATTGQNA 273 (340)
T ss_pred HHHHHHHhcccc-CCCCceEEEEEEcccChhH
Confidence 455544333221 11232 2233366666543
No 266
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=47.81 E-value=8.6 Score=37.51 Aligned_cols=29 Identities=21% Similarity=0.635 Sum_probs=22.0
Q ss_pred hcccccccccchhhcccc-ccccccccCCC
Q psy5220 29 IKCLSCKTILYKNDLKFN-QQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~-~~vc~~~~~~~ 57 (286)
+.||.|+...-.+.+..+ ...||+|++.-
T Consensus 11 ~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L 40 (419)
T PRK15103 11 ILCPQCDMLVALPRLEHGQKAACPRCGTTL 40 (419)
T ss_pred ccCCCCCceeecCCCCCCCeeECCCCCCCC
Confidence 669999987776666553 46799999873
No 267
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=47.30 E-value=7.9 Score=35.81 Aligned_cols=38 Identities=18% Similarity=0.549 Sum_probs=28.9
Q ss_pred hcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCc
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs 73 (286)
..||.|+......|.++...||-.||-=-. +.++|.|.
T Consensus 2 ~~CpeCg~~~~~~d~~~ge~VC~~CG~Vi~-------~~~id~gp 39 (285)
T COG1405 2 MSCPECGSTNIITDYERGEIVCADCGLVLE-------DSLIDPGP 39 (285)
T ss_pred CCCCCCCCccceeeccCCeEEeccCCEEec-------cccccCCC
Confidence 479999998777788889999999986411 34666655
No 268
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=47.20 E-value=9.1 Score=24.65 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=14.3
Q ss_pred cccccccccch--hhccccccccccccC
Q psy5220 30 KCLSCKTILYK--NDLKFNQQVCTKCDY 55 (286)
Q Consensus 30 ~c~~c~~~~~~--~~l~~~~~vc~~~~~ 55 (286)
+|++|+...-. +--+.....||+|+.
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 68888842211 100124678888887
No 269
>PRK10342 glycerate kinase I; Provisional
Probab=46.93 E-value=14 Score=35.58 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 108 ETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 108 ~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
..|=||||.|++|.++.. | .-.....++|.+.++|+|.|+.+=
T Consensus 284 ~ADLVITGEG~~D~QTl~----------G-------K~p~gVa~~A~~~~vPviai~G~~ 326 (381)
T PRK10342 284 DCTLVITGEGRIDSQSIH----------G-------KVPIGVANVAKKYHKPVIGIAGSL 326 (381)
T ss_pred cCCEEEECCCcCcccccC----------C-------ccHHHHHHHHHHhCCCEEEEeccc
Confidence 478899999999887543 2 223566677899999999998863
No 270
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=46.90 E-value=7.3 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=20.4
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
..|+.|+...|..+ .-.++|-+|+|.
T Consensus 9 ~~C~~C~~~~~~~~--dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFYSD--DGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCeEeEcc--CCEEEhhhCceE
Confidence 46999999877653 457999889885
No 271
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=46.68 E-value=15 Score=35.26 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=33.2
Q ss_pred CCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Q psy5220 108 ETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGG 168 (286)
Q Consensus 108 ~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgG 168 (286)
..|=||||.|++|.++.. |. -.....++|.+.++|+|.++.+=+
T Consensus 283 ~ADlVITGEG~~D~Qtl~----------GK-------~p~~Va~~A~~~~vPviai~G~v~ 326 (375)
T TIGR00045 283 DADLVITGEGRLDRQSLM----------GK-------APVGVAKRAKKYGVPVIAIAGSLG 326 (375)
T ss_pred CCCEEEECCCcccccccC----------Cc-------hHHHHHHHHHHhCCeEEEEecccC
Confidence 478899999999877543 22 235666788999999999987643
No 272
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=45.41 E-value=5.8 Score=26.23 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=17.6
Q ss_pred cccccccccc-------hhhcccccccccc--ccCCCC
Q psy5220 30 KCLSCKTILY-------KNDLKFNQQVCTK--CDYHMQ 58 (286)
Q Consensus 30 ~c~~c~~~~~-------~~~l~~~~~vc~~--~~~~~~ 58 (286)
+||.|+.... .+++...+..|.+ |+|.+.
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~~Cg~tfv 38 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSPLTRELYCQCTNPECGHTFV 38 (47)
T ss_pred CcCCCCCeeEEEEchhhCcceEEEEEEECCCcCCCEEE
Confidence 5888886332 1234446777877 777654
No 273
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.33 E-value=8.8 Score=28.50 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=15.8
Q ss_pred cccccccccch---hhccccccccccccC
Q psy5220 30 KCLSCKTILYK---NDLKFNQQVCTKCDY 55 (286)
Q Consensus 30 ~c~~c~~~~~~---~~l~~~~~vc~~~~~ 55 (286)
-||.|+..+-- .++ -...||+|+-
T Consensus 3 lCP~C~v~l~~~~rs~v--EiD~CPrCrG 29 (88)
T COG3809 3 LCPICGVELVMSVRSGV--EIDYCPRCRG 29 (88)
T ss_pred ccCcCCceeeeeeecCc--eeeeCCcccc
Confidence 59999974433 233 2578999974
No 274
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=45.27 E-value=9.8 Score=29.54 Aligned_cols=38 Identities=16% Similarity=0.473 Sum_probs=22.6
Q ss_pred cCCCCchhhhcccccccccchhhc--cccccccccccCCCCC
Q psy5220 20 KKSIPKGLWIKCLSCKTILYKNDL--KFNQQVCTKCDYHMQI 59 (286)
Q Consensus 20 ~~~~~~~~~~~c~~c~~~~~~~~l--~~~~~vc~~~~~~~~~ 59 (286)
+..+| . ...||.|++..-.-.+ ..-..+|++|+++...
T Consensus 15 k~klp-t-~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 15 KPKLP-K-IFECPRCGKVSISVKIKKNIAIITCGNCGLYTEF 54 (99)
T ss_pred ccCCC-c-EeECCCCCCeEeeeecCCCcceEECCCCCCccCE
Confidence 34445 3 4579999953221011 2247899999998543
No 275
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=44.99 E-value=11 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.360 Sum_probs=15.0
Q ss_pred cccccccccch--hhccccccccccccCC
Q psy5220 30 KCLSCKTILYK--NDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~--~~l~~~~~vc~~~~~~ 56 (286)
+|++|+...-. ..-+...-.||.|+..
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 7 RCTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred EeCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 78888862221 1001234579999873
No 276
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=44.99 E-value=26 Score=28.00 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEE--eCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcccc
Q psy5220 141 VVGERFIQGAQISLEQKIPFVCIT--ATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFM 217 (286)
Q Consensus 141 ~~~~K~~r~~~~A~~~~iPlV~l~--dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~~ 217 (286)
.-++++.++++.+ ..+..-|+++ |++.... ..+..+.+.|.+. -+|.||+-=||++.+++.
T Consensus 44 dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l~~----------~~l~~A~~~L~~~-----d~VlgPa~DGGy~LiG~~ 106 (122)
T PF09837_consen 44 DLGERMANAFQQA-ARGYEPVVLIGSDCPDLTP----------DDLEQAFEALQRH-----DVVLGPAEDGGYYLIGLR 106 (122)
T ss_dssp SHHHHHHHHHHHH-HTT-SEEEEE-SS-TT--H----------HHHHHHHHHTTT------SEEEEEBTTSSEEEEEEE
T ss_pred CHHHHHHHHHHHH-HcCCCcEEEEcCCCCCCCH----------HHHHHHHHHhccC-----CEEEeeccCCCEEEEecC
Confidence 3456667777776 4444444444 4443322 2233344455433 578999999998766653
No 277
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=44.71 E-value=2.7 Score=35.24 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=29.1
Q ss_pred hhcccccccccchhhccccccccccccCCC-CCCHHHHHHhhcCCCc
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHM-QIKARDRLNNFLDKNN 73 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~-~~~ar~ri~~L~D~gs 73 (286)
+..||.|++.+... ....+.|++|+... .+..|=++...+.++|
T Consensus 34 Y~aC~~C~kkv~~~--~~~~~~C~~C~~~~~~~~~ry~l~~~i~D~T 78 (166)
T cd04476 34 YPACPGCNKKVVEE--GNGTYRCEKCNKSVPNPEYRYILSLNVADHT 78 (166)
T ss_pred EccccccCcccEeC--CCCcEECCCCCCcCCCccEEEEEEEEEEeCC
Confidence 47899999987653 22579999998874 4555555555444433
No 278
>PRK11827 hypothetical protein; Provisional
Probab=44.65 E-value=10 Score=26.73 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=24.5
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHHh
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNN 67 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~ 67 (286)
...||.|+..+...+ ..+.-+|+.|+.. |..++=|=.
T Consensus 8 ILaCP~ckg~L~~~~-~~~~Lic~~~~la--YPI~dgIPV 44 (60)
T PRK11827 8 IIACPVCNGKLWYNQ-EKQELICKLDNLA--FPLRDGIPV 44 (60)
T ss_pred heECCCCCCcCeEcC-CCCeEECCccCee--ccccCCccc
Confidence 357999987766533 4456789988765 555665543
No 279
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.49 E-value=58 Score=30.12 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHHhCC----CcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhc
Q psy5220 139 GSVVGERFIQGAQISLEQK----IPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASF 214 (286)
Q Consensus 139 ~~~~~~K~~r~~~~A~~~~----iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~ 214 (286)
|......|.++++.+++.+ .=+|++.=.||..- ....++. ..+.+++ .++++|+||.|=... = ..+
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e--DL~~FN~-e~varai---~~~~~PvisaIGHe~-D---~ti 122 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE--DLWAFND-EEVARAI---AASPIPVISAIGHET-D---FTI 122 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCCChH--HhcccCh-HHHHHHH---HhCCCCEEEecCCCC-C---chH
Confidence 4667788999999988765 66888887777521 1111111 2233333 457999998642221 0 112
Q ss_pred c-ccccEEEEcCCcE
Q psy5220 215 A-FMGDIVIAEPGAL 228 (286)
Q Consensus 215 a-~~~d~via~~~A~ 228 (286)
+ +.+|....+|+|-
T Consensus 123 ~D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 123 ADFVADLRAPTPTAA 137 (319)
T ss_pred HHHHHHhhCCCHHHH
Confidence 2 4578888899864
No 280
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=44.28 E-value=8.9 Score=35.72 Aligned_cols=39 Identities=21% Similarity=0.479 Sum_probs=27.6
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCCCc
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gs 73 (286)
-.+||.|+..-...|.+....||..||.=. . +.++|.|+
T Consensus 11 ~~~Cp~Cg~~~iv~d~~~Ge~vC~~CG~Vl--~-----e~~iD~g~ 49 (310)
T PRK00423 11 KLVCPECGSDKLIYDYERGEIVCADCGLVI--E-----ENIIDQGP 49 (310)
T ss_pred CCcCcCCCCCCeeEECCCCeEeecccCCcc--c-----ccccccCC
Confidence 358999997433335567889999999841 1 45788875
No 281
>PRK05580 primosome assembly protein PriA; Validated
Probab=44.22 E-value=94 Score=32.26 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=14.5
Q ss_pred hcccccccccchhhccccccccccccCCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.+||+|+..+.... ..+.-.|..|++..
T Consensus 391 ~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~ 418 (679)
T PRK05580 391 AECPHCDASLTLHR-FQRRLRCHHCGYQE 418 (679)
T ss_pred cCCCCCCCceeEEC-CCCeEECCCCcCCC
Confidence 46888886543321 23444455555543
No 282
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=43.70 E-value=16 Score=37.60 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=23.0
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHH
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLN 66 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~ 66 (286)
...|+.|+... ......||+|+.+ .++...||-
T Consensus 566 ~~iC~~CG~~~-----~g~~~~CP~CGs~-~~ev~~RV~ 598 (623)
T PRK08271 566 ITICNDCHHID-----KRTGKRCPICGSE-NIDYYTRVI 598 (623)
T ss_pred CccCCCCCCcC-----CCCCcCCcCCCCc-chhHHHHHh
Confidence 46899999542 2246899999975 466666663
No 283
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.60 E-value=23 Score=24.63 Aligned_cols=37 Identities=19% Similarity=0.419 Sum_probs=27.6
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHHh
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNN 67 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~ 67 (286)
-..|.+||+++-.++-- ...|+.|+.. -++..++.++
T Consensus 18 ~~NCl~CGkIiC~~Eg~--~~pC~fCg~~-l~~~~~~~~l 54 (57)
T PF06221_consen 18 APNCLNCGKIICEQEGP--LGPCPFCGTP-LLSSEERQEL 54 (57)
T ss_pred cccccccChhhcccccC--cCcCCCCCCc-ccCHHHHHHH
Confidence 45799999999987521 6899999965 5666666543
No 284
>PRK12495 hypothetical protein; Provisional
Probab=43.14 E-value=11 Score=33.46 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=20.6
Q ss_pred hhcccccccccchhhccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-.-|+.|+.+|+. + ....+||.|...
T Consensus 42 a~hC~~CG~PIpa--~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 42 NAHCDECGDPIFR--H-DGQEFCPTCQQP 67 (226)
T ss_pred hhhcccccCcccC--C-CCeeECCCCCCc
Confidence 4679999999994 3 457889999865
No 285
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=43.04 E-value=6.9 Score=32.54 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=23.7
Q ss_pred hcccccccc----cchhhcc-----ccccccccccCCCCCCHHHHHHh
Q psy5220 29 IKCLSCKTI----LYKNDLK-----FNQQVCTKCDYHMQIKARDRLNN 67 (286)
Q Consensus 29 ~~c~~c~~~----~~~~~l~-----~~~~vc~~~~~~~~~~ar~ri~~ 67 (286)
.+||.|+.. +.....+ +.-..|+.|+++ +|..|+++.
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~R--FTTyErve~ 46 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHER--FTTFERAEL 46 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCc--cceeeeccc
Confidence 379999972 2221111 124679999986 788888864
No 286
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=42.80 E-value=26 Score=29.04 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=43.9
Q ss_pred ccCCCCCCHHHHHH-hhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCe
Q psy5220 53 CDYHMQIKARDRLN-NFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNL 122 (286)
Q Consensus 53 ~~~~~~~~ar~ri~-~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~ 122 (286)
|+|.+ +..++.|. .|-+.| ++-.+-...+.+|.+||| |..++.++-.......+|+ +|.| |+.|.
T Consensus 5 sDhaG-~~lK~~l~~~L~~~g-~eV~D~G~~~~~~~dYpd---~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GI 79 (144)
T TIGR00689 5 SDHAG-LELKSEIIEHLKQKG-HEVIDCGTLYDERVDYPD---YAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGI 79 (144)
T ss_pred eCcch-HHHHHHHHHHHHHCC-CEEEEcCCCCCCCCChHH---HHHHHHHHHHcCCCceEEEEcCCcHHHHHHHhcCCCe
Confidence 34443 34444443 333443 333322222356778887 8888888877766667765 5555 88999
Q ss_pred eEEEEEEc
Q psy5220 123 PLVVAVFE 130 (286)
Q Consensus 123 ~v~v~a~d 130 (286)
+++++-+.
T Consensus 80 raa~~~d~ 87 (144)
T TIGR00689 80 RAALCVDE 87 (144)
T ss_pred EEEEECCH
Confidence 98887554
No 287
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=42.69 E-value=11 Score=25.93 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=15.9
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.+|+.|++.+..+| ..-+||.|+..
T Consensus 6 ~~C~~Cg~~~~~~d---DiVvCp~Cgap 30 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD---DIVVCPECGAP 30 (54)
T ss_pred ccChhhCCcccCCC---CEEECCCCCCc
Confidence 46777887776432 24677777654
No 288
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=42.49 E-value=14 Score=38.05 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=23.1
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHH
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLN 66 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~ 66 (286)
...|+.|+..+ ......||+|+.+ .+..-.||-
T Consensus 568 ~~~C~~CG~~~-----~g~~~~CP~CGs~-~~~v~~Rv~ 600 (625)
T PRK08579 568 ITVCNKCGRST-----TGLYTRCPRCGSE-DVEVWSRII 600 (625)
T ss_pred CccCCCCCCcc-----CCCCCcCcCCCCc-hhHHHHHHH
Confidence 56899999744 1236899999975 456666654
No 289
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=42.47 E-value=6.5 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.735 Sum_probs=12.0
Q ss_pred hcccccccccchhhccc-ccccccccc
Q psy5220 29 IKCLSCKTILYKNDLKF-NQQVCTKCD 54 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~-~~~vc~~~~ 54 (286)
++|..|++.+.+-+-.. ...-||+|.
T Consensus 5 iRC~~CnKlLa~a~~~~yle~KCPrCK 31 (60)
T COG4416 5 IRCAKCNKLLAEAEGQAYLEKKCPRCK 31 (60)
T ss_pred eehHHHhHHHHhcccceeeeecCCccc
Confidence 35555555555443221 233455553
No 290
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=42.17 E-value=14 Score=24.58 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=4.5
Q ss_pred ccccccccCC
Q psy5220 47 QQVCTKCDYH 56 (286)
Q Consensus 47 ~~vc~~~~~~ 56 (286)
.++||.|+..
T Consensus 34 ~w~CP~C~a~ 43 (47)
T PF00301_consen 34 DWVCPVCGAP 43 (47)
T ss_dssp T-B-TTTSSB
T ss_pred CCcCcCCCCc
Confidence 4566666543
No 291
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=42.09 E-value=27 Score=32.27 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcC-Ccch
Q psy5220 156 QKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTN-PTMG 208 (286)
Q Consensus 156 ~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g-~~~G 208 (286)
.+.|||.+.+=|++ .+.| +.++..+.. .++|++.+|.+ ..||
T Consensus 70 Pd~~VVai~GDG~f-~~mg------~~eL~tA~r----~nl~I~vIVlNN~~yG 112 (287)
T TIGR02177 70 PHLKVIVVGGDGDL-YGIG------GNHFVAAGR----RNVDITVIVHDNQVYG 112 (287)
T ss_pred CCCcEEEEeCchHH-Hhcc------HHHHHHHHH----hCcCeEEEEEECHHHH
Confidence 46899988865553 1112 233333322 26777766664 4444
No 292
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=42.08 E-value=7.9 Score=32.68 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEcCCc
Q psy5220 180 QMAKTTAILTKLSKKKIPFISVLTNPT 206 (286)
Q Consensus 180 ~~~~~~~a~~~l~~~~vP~Isvv~g~~ 206 (286)
.+.++...+.++.+...|.--++..|.
T Consensus 128 ~~~~~i~~L~~~~~g~~pfTlIidDP~ 154 (161)
T PF03367_consen 128 KIEEFIEKLDELIEGKRPFTLIIDDPS 154 (161)
T ss_dssp HHHHHHHHHHHHHCTSS-EEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 345666677777777777666666553
No 293
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=41.66 E-value=78 Score=28.20 Aligned_cols=54 Identities=13% Similarity=0.310 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhh
Q psy5220 147 IQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGV 210 (286)
Q Consensus 147 ~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg 210 (286)
.-+.+++.+.++|+|+++.+ ++ |.. .+..-.++.+.+.++|...+|.+.-....
T Consensus 126 ~~~~D~~~~~~lpvILV~~~---~L--GtI-----NHtlLt~eal~~~gl~l~G~I~n~~~~~~ 179 (223)
T COG0132 126 YTFADLAVQLQLPVILVVGI---KL--GTI-----NHTLLTVEALRARGLPLAGWVANGINPEL 179 (223)
T ss_pred ccHHHHHHHcCCCEEEEecC---Cc--cHH-----HHHHHHHHHHHHCCCCEEEEEEccCCCch
Confidence 57888899999999998855 33 333 45555567778889999999988655443
No 294
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.49 E-value=40 Score=26.17 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 144 ERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 144 ~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
..+.++++.|.+.++|+|.+++.++..+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 4567888889999999999999876554
No 295
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=41.48 E-value=12 Score=31.61 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCc
Q psy5220 181 MAKTTAILTKLSKKKIPFISVLTNPT 206 (286)
Q Consensus 181 ~~~~~~a~~~l~~~~vP~Isvv~g~~ 206 (286)
+.++...+..+.+...|.--++..|+
T Consensus 128 ~~~~~~~L~~~~~g~~~fTliidDP~ 153 (160)
T smart00709 128 IDEFLEKLKELIEGKEPFTLILDDPA 153 (160)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 44555566666666666665555553
No 296
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=41.43 E-value=12 Score=32.05 Aligned_cols=45 Identities=11% Similarity=0.316 Sum_probs=26.9
Q ss_pred hhhhcccccccccchhhccccccccccccCCCC-CCHHHHHHhhcC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQ-IKARDRLNNFLD 70 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~-~~ar~ri~~L~D 70 (286)
+..--||.|+....-.+--...+.||+||..-. ++-.+-|..|.+
T Consensus 111 ~~~y~C~~~~~r~sfdeA~~~~F~Cp~Cg~~L~~~d~s~~i~~l~~ 156 (176)
T COG1675 111 NNYYVCPNCHVKYSFDEAMELGFTCPKCGEDLEEYDSSEEIEELES 156 (176)
T ss_pred CCceeCCCCCCcccHHHHHHhCCCCCCCCchhhhccchHHHHHHHH
Confidence 444568888765554443446799999988632 344444444443
No 297
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=41.26 E-value=11 Score=41.71 Aligned_cols=24 Identities=25% Similarity=0.710 Sum_probs=18.6
Q ss_pred hhcccccccccchhhccccccccccccCCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQ 58 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~ 58 (286)
..+||+|++..+ ...||.|+.|..
T Consensus 674 ~~~Cp~Cg~~~~-------~~~Cp~CG~~~~ 697 (1627)
T PRK14715 674 FFKCPKCGKVGL-------YHVCPFCGTRVE 697 (1627)
T ss_pred eeeCCCCCCccc-------cccCcccCCccc
Confidence 469999997655 468999998743
No 298
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=41.15 E-value=16 Score=37.59 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=23.2
Q ss_pred hhcccccccccchhhccccccccccccCCC--CCCHHHHHH
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHM--QIKARDRLN 66 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~--~~~ar~ri~ 66 (286)
...|+.|+. .-+ ....||+||.+. +++...||-
T Consensus 559 ~~~C~~CGy---~g~---~~~~CP~CG~~d~~~~~v~~Ri~ 593 (618)
T PRK14704 559 VDRCKCCSY---HGV---IGNECPSCGNEDEANIERIRRIT 593 (618)
T ss_pred CeecCCCCC---CCC---cCccCcCCCCCCcchhHHHHHHH
Confidence 468999994 222 248999999774 467777764
No 299
>KOG2691|consensus
Probab=40.80 E-value=15 Score=28.88 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=25.7
Q ss_pred ccCCCCchhhhccccccc--cc-chh------hccccccccccccCCC
Q psy5220 19 VKKSIPKGLWIKCLSCKT--IL-YKN------DLKFNQQVCTKCDYHM 57 (286)
Q Consensus 19 ~~~~~~~~~~~~c~~c~~--~~-~~~------~l~~~~~vc~~~~~~~ 57 (286)
..+.+|.-.-..||+|+. .+ |+. +-...++||-.|+|..
T Consensus 64 ~DPTLPrts~~~C~~C~~~eavffQ~~~~r~d~~m~l~yvC~~C~h~w 111 (113)
T KOG2691|consen 64 SDPTLPRTSDKHCPKCGHREAVFFQAQTRRADEAMRLFYVCCSCGHRW 111 (113)
T ss_pred cCCCcCccccccCCccCCcceEEEecccccccceEEEEEEeccccccc
Confidence 445677666778999985 22 221 2234689999999874
No 300
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=40.42 E-value=17 Score=28.65 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=34.6
Q ss_pred hhcccccccccchhhccccccccccccCC-CCCCHHHHHHhhcCCCceEEecC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH-MQIKARDRLNNFLDKNNFHEIGE 79 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~-~~~~ar~ri~~L~D~gsf~E~~~ 79 (286)
-..|+.|+..-+... .=....||+|+.+ ..-.+..+.+.|+|-.-|.-+..
T Consensus 42 ~~~C~~Cg~~~~~~~-SCk~R~CP~C~~~~~~~W~~~~~~~ll~~~y~HvVFT 93 (111)
T PF14319_consen 42 RYRCEDCGHEKIVYN-SCKNRHCPSCQAKATEQWIEKQREDLLPVPYFHVVFT 93 (111)
T ss_pred eeecCCCCceEEecC-cccCcCCCCCCChHHHHHHHHHHhhCCCCCeEEEEEc
Confidence 358999997555432 2235699999887 33556667778888766766655
No 301
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=40.32 E-value=34 Score=32.30 Aligned_cols=42 Identities=19% Similarity=0.054 Sum_probs=34.5
Q ss_pred EEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 114 VIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 114 tG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
.|+-...+.|=+|++.|... =..++..|.+.+||+|.|+||-
T Consensus 144 ~Gi~~m~~~Pd~viv~d~~~------------e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 144 GGIKDMGGLPDLLFVIDTNK------------EDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cchhhcccCCCEEEEeCCcc------------chHHHHHHHHcCCCEEEEeeCC
Confidence 46667778898999998752 2578999999999999999985
No 302
>PRK04023 DNA polymerase II large subunit; Validated
Probab=40.15 E-value=14 Score=39.66 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=6.6
Q ss_pred EEEcCCcEEEeeCh
Q psy5220 221 VIAEPGALIGFAGP 234 (286)
Q Consensus 221 via~~~A~i~~~gp 234 (286)
+|---+|..+++-|
T Consensus 849 IIGft~a~vgyAHP 862 (1121)
T PRK04023 849 IIGFTKANVGYAHP 862 (1121)
T ss_pred eeeeeccceeccCc
Confidence 33333455555554
No 303
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=39.89 E-value=4.2 Score=38.81 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=21.8
Q ss_pred cCCCCchhhhcccccccccchh------hccccccccccccCCCCCCHHH
Q psy5220 20 KKSIPKGLWIKCLSCKTILYKN------DLKFNQQVCTKCDYHMQIKARD 63 (286)
Q Consensus 20 ~~~~~~~~~~~c~~c~~~~~~~------~l~~~~~vc~~~~~~~~~~ar~ 63 (286)
+.+.| ...-|++|+++...+ +-..-.+.|+.|||.+..+.++
T Consensus 168 ~~y~P--f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~ 215 (360)
T PF01921_consen 168 ETYSP--FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITG 215 (360)
T ss_dssp TT--S--EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTT
T ss_pred CCeee--eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCC
Confidence 34445 567899999954433 1233478999999998776554
No 304
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=39.84 E-value=20 Score=25.11 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=16.6
Q ss_pred hhhcccccccccchhhccccccccccccCCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
+..+|++|+.-.. ...||.|+..-
T Consensus 4 ~~rkC~~cg~YTL-------ke~Cp~CG~~t 27 (59)
T COG2260 4 LIRKCPKCGRYTL-------KEKCPVCGGDT 27 (59)
T ss_pred hhhcCcCCCceee-------cccCCCCCCcc
Confidence 4568999984332 25899998763
No 305
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=39.76 E-value=17 Score=33.16 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=21.5
Q ss_pred CchhhhcccccccccchhhccccccccccccCCC
Q psy5220 24 PKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
|...-..||.||. +......||.|+++.
T Consensus 305 ~~~tS~~C~~cg~------~~~r~~~C~~cg~~~ 332 (364)
T COG0675 305 PYYTSKTCPCCGH------LSGRLFKCPRCGFVH 332 (364)
T ss_pred CCCCcccccccCC------ccceeEECCCCCCee
Confidence 4556678999998 444578999999863
No 306
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=39.09 E-value=17 Score=25.21 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=16.7
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
...+|++|+.... ..+||.||..
T Consensus 4 ~mr~C~~CgvYTL-------k~~CP~CG~~ 26 (56)
T PRK13130 4 KIRKCPKCGVYTL-------KEICPVCGGK 26 (56)
T ss_pred cceECCCCCCEEc-------cccCcCCCCC
Confidence 3568999985433 4689999866
No 307
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=38.84 E-value=13 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=23.1
Q ss_pred CchhhhcccccccccchhhccccccccccccCCCCCCHH
Q psy5220 24 PKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar 62 (286)
|+..|. |.+|+...- ....+||+|+.-..++.+
T Consensus 351 ~~p~~~-c~~cg~~~~-----~~~~~c~~c~~~~~~~~~ 383 (389)
T PRK11788 351 RKPRYR-CRNCGFTAR-----TLYWHCPSCKAWETIKPI 383 (389)
T ss_pred CCCCEE-CCCCCCCCc-----cceeECcCCCCccCcCCc
Confidence 444464 999995432 257899999988777654
No 308
>KOG1873|consensus
Probab=38.81 E-value=5.9 Score=41.03 Aligned_cols=37 Identities=32% Similarity=0.700 Sum_probs=28.4
Q ss_pred CCCCchhhhcccccccccchhh--------ccccccccccccCCC
Q psy5220 21 KSIPKGLWIKCLSCKTILYKND--------LKFNQQVCTKCDYHM 57 (286)
Q Consensus 21 ~~~~~~~~~~c~~c~~~~~~~~--------l~~~~~vc~~~~~~~ 57 (286)
+.+.+.+|.+|-.|.+..+.++ +....+.|-+||+++
T Consensus 59 ~~iks~~~~~C~eC~e~~~~k~g~s~~~~~~~~~iWLCLkCG~q~ 103 (877)
T KOG1873|consen 59 RAIKSLLWIKCSECNEEVKVKDGGSSDQFEFDNAIWLCLKCGYQG 103 (877)
T ss_pred HHHHHHHHHHHHHhhhcceeccCCCccccccccceeeecccCCee
Confidence 3455678999999999877766 234578999999983
No 309
>KOG0781|consensus
Probab=38.79 E-value=1e+02 Score=30.86 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=45.7
Q ss_pred cCeeEEEEEEcCcccccCCCh--HHHH-----------------------HHHHHHHHHHhCCCcEEEEEeCCCcchhhc
Q psy5220 120 MNLPLVVAVFEFEFMGGSMGS--VVGE-----------------------RFIQGAQISLEQKIPFVCITATGGARMQEG 174 (286)
Q Consensus 120 ~G~~v~v~a~d~~~~gGs~~~--~~~~-----------------------K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg 174 (286)
|+.+|.|+|-| +|+.|++-. .+.+ -.-.+++.|.+.+--|| |+|+.| |||.-
T Consensus 405 NkfrVLIAACD-TFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVv-LiDTAG-R~~~~ 481 (587)
T KOG0781|consen 405 NKFRVLIAACD-TFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVV-LIDTAG-RMHNN 481 (587)
T ss_pred CCceEEEEecc-chhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEE-EEeccc-cccCC
Confidence 35579999988 677666421 1122 23467888888887766 578877 66432
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Q psy5220 175 LLSLMQMAKTTAILTKLSKKKIPFISVLTNPTM 207 (286)
Q Consensus 175 ~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~ 207 (286)
..++..++.+.....|=..+..|.+.
T Consensus 482 -------~~lm~~l~k~~~~~~pd~i~~vgeal 507 (587)
T KOG0781|consen 482 -------APLMTSLAKLIKVNKPDLILFVGEAL 507 (587)
T ss_pred -------hhHHHHHHHHHhcCCCceEEEehhhh
Confidence 12233344454455665555556553
No 310
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=38.59 E-value=18 Score=24.48 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=6.4
Q ss_pred ccccccccCC
Q psy5220 47 QQVCTKCDYH 56 (286)
Q Consensus 47 ~~vc~~~~~~ 56 (286)
.++||.|+..
T Consensus 34 ~w~CP~C~a~ 43 (50)
T cd00730 34 DWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCc
Confidence 4677777653
No 311
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=38.56 E-value=12 Score=27.35 Aligned_cols=30 Identities=17% Similarity=0.415 Sum_probs=20.5
Q ss_pred hcccccccccc-------hhhccccccccc--cccCCCC
Q psy5220 29 IKCLSCKTILY-------KNDLKFNQQVCT--KCDYHMQ 58 (286)
Q Consensus 29 ~~c~~c~~~~~-------~~~l~~~~~vc~--~~~~~~~ 58 (286)
.+||.|+.... .+.+.+.+..|+ .|++.+.
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N~eCg~tF~ 40 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFI 40 (72)
T ss_pred ccCCCCCCccEEEEChhcChhhheeeeecCCCCCCCEEE
Confidence 47999997431 123445788998 8999864
No 312
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=38.35 E-value=11 Score=31.40 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=23.8
Q ss_pred hcccccccc----cchhhcc-----ccccccccccCCCCCCHHHHHHhh
Q psy5220 29 IKCLSCKTI----LYKNDLK-----FNQQVCTKCDYHMQIKARDRLNNF 68 (286)
Q Consensus 29 ~~c~~c~~~----~~~~~l~-----~~~~vc~~~~~~~~~~ar~ri~~L 68 (286)
.+||-|+.. +.....+ +.-..|+.|+++ .|.-|+++..
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~R--FTTfE~~El~ 47 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGER--FTTFERAELR 47 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccc--cchhheeeec
Confidence 379999862 2111111 124689999987 6888887653
No 313
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=38.25 E-value=18 Score=34.93 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=27.7
Q ss_pred hhhhcccccccccchhhccccccccccccCCCCCCHHHHHH
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLN 66 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~ 66 (286)
+-|.-|..|+...+.+ ....||+|+.+....-+++|+
T Consensus 218 ~~~~~C~~C~~~~~~~----~~~~CpRC~~~Ly~rr~~sLq 254 (418)
T COG2995 218 EGLRSCLCCHYILPHD----AEPRCPRCGSKLYVRRRNSLQ 254 (418)
T ss_pred ccceecccccccCCHh----hCCCCCCCCChhhccChhhHH
Confidence 4678899999877764 358999999886655566554
No 314
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=38.22 E-value=35 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=25.8
Q ss_pred ccccCCChHHHHHHHHHHHHHHhCCCcE
Q psy5220 133 FMGGSMGSVVGERFIQGAQISLEQKIPF 160 (286)
Q Consensus 133 ~~gGs~~~~~~~K~~r~~~~A~~~~iPl 160 (286)
.+||.+-....+-+.++.++|.+.++|+
T Consensus 41 eRgG~IP~~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 41 ERGGQIPEKVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHcCCCH
Confidence 3799999999999999999999999984
No 315
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=37.69 E-value=71 Score=31.08 Aligned_cols=98 Identities=17% Similarity=0.299 Sum_probs=56.6
Q ss_pred EEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcC
Q psy5220 125 VVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTN 204 (286)
Q Consensus 125 ~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g 204 (286)
-|......|. |......++++++.+++.+.=+|++.-.||. +. ....++. ..+.++ +.++++|+||.|=.
T Consensus 164 ~~~~~~~~vQ----G~~A~~~i~~al~~~~~~~~Dviii~RGGGS-~e-DL~~Fn~-e~v~~a---i~~~~~Pvis~IGH 233 (438)
T PRK00286 164 EVIIYPTLVQ----GEGAAASIVAAIERANARGEDVLIVARGGGS-LE-DLWAFND-EAVARA---IAASRIPVISAVGH 233 (438)
T ss_pred eEEEecCcCc----CccHHHHHHHHHHHhcCCCCCEEEEecCCCC-HH-HhhccCc-HHHHHH---HHcCCCCEEEeccC
Confidence 3444444444 4667888899999888766667888777774 21 1111111 123333 34579999986522
Q ss_pred Ccchhhhhhcc-ccccEEEEcCCcEEEeeChhh
Q psy5220 205 PTMGGVSASFA-FMGDIVIAEPGALIGFAGPRV 236 (286)
Q Consensus 205 ~~~GGg~~s~a-~~~d~via~~~A~i~~~gp~v 236 (286)
.. = ..++ +.+|...++|+|-.-+.-|..
T Consensus 234 E~-D---~tl~D~vAd~ra~TPtaaae~~~~~~ 262 (438)
T PRK00286 234 ET-D---FTIADFVADLRAPTPTAAAELAVPDR 262 (438)
T ss_pred CC-C---ccHHHHhhhccCCChHHHHHHhCccH
Confidence 21 0 1122 457888899987554444543
No 316
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=37.50 E-value=12 Score=29.16 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=19.2
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.+|.+|++....-+ +..+.=||+|+-+
T Consensus 3 H~CtrCG~vf~~g~-~~il~GCp~CG~n 29 (112)
T COG3364 3 HQCTRCGEVFDDGS-EEILSGCPKCGCN 29 (112)
T ss_pred ceeccccccccccc-HHHHccCccccch
Confidence 47999996554422 4567889999766
No 317
>PF14828 Amnionless: Amnionless
Probab=37.29 E-value=1.5e+02 Score=29.24 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=61.2
Q ss_pred ccchhhccccccccccccCCCCCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEEEEE
Q psy5220 37 ILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIK 116 (286)
Q Consensus 37 ~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~ 116 (286)
+.-..-|...-+.|+-||....++.. ... .| |-+.|+++|.+.-.+....++|-+..
T Consensus 216 ~~C~~pl~P~GhCC~iCGa~v~~~~~--~~~--------------------~f-dl~~~~~~l~~~~~~~~~~~~v~~~v 272 (437)
T PF14828_consen 216 PHCRSPLRPEGHCCPICGAIVTLEYS--CES--------------------TF-DLQSYRQRLRHAFLELPQYDEVQMHV 272 (437)
T ss_pred CccCCCCCCCCCchhhcceEEEEeec--CCc--------------------cc-cHHHHHHHHHHHHhccccccceeEEE
Confidence 33333444457899999886443322 000 11 12358889888888777788999999
Q ss_pred EEEcCee----EEEEEEcCcccccCCChHHHHHHHHHH-----HHHHhCCCcEEEEEeCCC
Q psy5220 117 GSIMNLP----LVVAVFEFEFMGGSMGSVVGERFIQGA-----QISLEQKIPFVCITATGG 168 (286)
Q Consensus 117 g~i~G~~----v~v~a~d~~~~gGs~~~~~~~K~~r~~-----~~A~~~~iPlV~l~dsgG 168 (286)
.++.-.. +-|+..|. |.-+...++.+++.+ +.-...++--..+.-+|+
T Consensus 273 ~kv~~~~~~~~iQiVi~d~----g~~sg~~~~~la~~i~~dl~~~~~~~~~~~~~~~~Sg~ 329 (437)
T PF14828_consen 273 SKVWSDQSGNEIQIVITDR----GSYSGRAAEFLAREILKDLAEHGQARGILSATIEVSGA 329 (437)
T ss_pred EEeecCCCCceEEEEEecC----CCcccHHHHHHHHHHHHHHHHHHhhccccceEEEeccC
Confidence 8886544 66777773 555555565555333 223345554444444443
No 318
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=37.25 E-value=49 Score=29.39 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=33.4
Q ss_pred EEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Q psy5220 114 VIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGG 168 (286)
Q Consensus 114 tG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgG 168 (286)
.|.-.....|=.|++.|+. +=..++..|...+||+|.++||.-
T Consensus 147 ~Gi~~m~~~Pd~vii~d~~------------~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 147 GGIKDMKKLPDLLFVIDPV------------KEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCccccccCCCEEEEeCCC------------ccHHHHHHHHHcCCCEEEEeeCCC
Confidence 3455566788888888864 235688999999999999999863
No 319
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=37.19 E-value=13 Score=32.47 Aligned_cols=31 Identities=26% Similarity=0.652 Sum_probs=20.4
Q ss_pred hhhcccccccccchh----------hccccccccccccCCC
Q psy5220 27 LWIKCLSCKTILYKN----------DLKFNQQVCTKCDYHM 57 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~----------~l~~~~~vc~~~~~~~ 57 (286)
....||.|+..++.. ++.-...+|.+|+|+.
T Consensus 13 ~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~ 53 (201)
T COG1779 13 TRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS 53 (201)
T ss_pred eeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence 346899999844332 2222357899999983
No 320
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=37.02 E-value=12 Score=37.33 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=25.5
Q ss_pred hhhcccccccccchhhcc-----ccccccccccCCCCCCHH
Q psy5220 27 LWIKCLSCKTILYKNDLK-----FNQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~-----~~~~vc~~~~~~~~~~ar 62 (286)
....|++|+++.+++=++ .-.+.|+ |||++.++.|
T Consensus 170 ~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce-~Gh~g~v~ir 209 (521)
T COG1384 170 FMPICEKCGRILTTPVIEWDGEGTVEYRCE-CGHEGEVDIR 209 (521)
T ss_pred ccccccccCCcceeEEEEecCCceEEEEec-CCccceeecc
Confidence 447899999966554222 3357896 9999998887
No 321
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=36.85 E-value=15 Score=33.32 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=7.7
Q ss_pred cccccccccccCCC
Q psy5220 44 KFNQQVCTKCDYHM 57 (286)
Q Consensus 44 ~~~~~vc~~~~~~~ 57 (286)
.++..-||+|++..
T Consensus 96 ~~~~~fC~~CG~~~ 109 (256)
T PRK00241 96 YRSHRFCGYCGHPM 109 (256)
T ss_pred hhcCccccccCCCC
Confidence 33455666666653
No 322
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=36.68 E-value=14 Score=26.06 Aligned_cols=38 Identities=24% Similarity=0.585 Sum_probs=25.3
Q ss_pred hcccccccccchhhccccccccccccCCCCCCHHHHHHhhc
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFL 69 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~ 69 (286)
.-||.|.-.++..+ ++..-+|+.|+.. +..++=|=.|+
T Consensus 9 LaCP~~kg~L~~~~-~~~~L~c~~~~~a--YpI~dGIPvlL 46 (60)
T COG2835 9 LACPVCKGPLVYDE-EKQELICPRCKLA--YPIRDGIPVLL 46 (60)
T ss_pred eeccCcCCcceEec-cCCEEEecccCce--eecccCccccC
Confidence 35999998777754 4567899998877 44444444333
No 323
>PLN02743 nicotinamidase
Probab=36.65 E-value=1e+02 Score=27.66 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=33.5
Q ss_pred EEcCeeEEEEEEcCc--cc---ccCCC--------hHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 118 SIMNLPLVVAVFEFE--FM---GGSMG--------SVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 118 ~i~G~~v~v~a~d~~--~~---gGs~~--------~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
-+++...++++-|.. |. +|.+. .....++.++++.|++.++|+|++.++
T Consensus 22 ~~~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~~d~ 83 (239)
T PLN02743 22 LNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAFLDS 83 (239)
T ss_pred ccCCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 466777777666654 33 24332 123456899999999999999999765
No 324
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=36.34 E-value=11 Score=26.45 Aligned_cols=31 Identities=23% Similarity=0.613 Sum_probs=20.2
Q ss_pred hccccccc----ccchhhccccccccccccCCCCCC
Q psy5220 29 IKCLSCKT----ILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 29 ~~c~~c~~----~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
-.||.|.. .+++++-- -.--|-+|+||.+-.
T Consensus 11 A~CP~C~~~Dtl~mW~En~v-e~vECV~CG~~~~~~ 45 (66)
T COG3529 11 AVCPACQAQDTLAMWRENNV-EIVECVKCGHHMREA 45 (66)
T ss_pred CCCcccchhhHHHHHHhcCC-ceEehhhcchHhhhc
Confidence 47999986 34554322 245688999997433
No 325
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=35.96 E-value=49 Score=30.01 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=35.3
Q ss_pred EEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 113 IVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 113 vtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
+.|.-..++.|=++++.|+. +=..++..|.+.+||||.++||-
T Consensus 147 lgGIk~m~~~Pd~l~ViDp~------------~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 147 LGGIKDMKGLPDVLFVIDPR------------KEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred hcchhhccCCCCEEEEeCCc------------HhHHHHHHHHHcCCCEEEEecCC
Confidence 46777788899999999975 22457888999999999999974
No 326
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=35.94 E-value=19 Score=28.95 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=16.9
Q ss_pred hhhcccccccccchh--hccc--cccccccccCC
Q psy5220 27 LWIKCLSCKTILYKN--DLKF--NQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~--~l~~--~~~vc~~~~~~ 56 (286)
.-.+| +|+...-.. ++.. +...||+|+.+
T Consensus 69 ~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~ 101 (124)
T PRK00762 69 VEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNK 101 (124)
T ss_pred eeEEe-eCcCcccccccchhccccCCcCcCCCCC
Confidence 34579 999553221 1111 23679999965
No 327
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=35.62 E-value=41 Score=27.87 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHH-
Q psy5220 84 VDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQIS- 153 (286)
Q Consensus 84 ~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A- 153 (286)
.++.+||| |..++.++-.......+|+ +|.| |+.|..++++.+. ...++|
T Consensus 36 ~~~~dYpd---~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GIraa~~~d~-----------------~~A~~ar 95 (143)
T TIGR01120 36 SERTDYPH---YAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAGIRAALCSEP-----------------YMAQMSR 95 (143)
T ss_pred CCCCCHHH---HHHHHHHHHHCCCCceEEEEcCCcHHHHHHHhcCCCeEEEEECCH-----------------HHHHHHH
Confidence 46678887 8888888777666666765 5554 8889998887654 233344
Q ss_pred HhCCCcEEEEE
Q psy5220 154 LEQKIPFVCIT 164 (286)
Q Consensus 154 ~~~~iPlV~l~ 164 (286)
...+.-+|.|-
T Consensus 96 ~hNnaNvl~lG 106 (143)
T TIGR01120 96 LHNDANVLCLG 106 (143)
T ss_pred HhcCCcEEEEC
Confidence 35567777774
No 328
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=35.36 E-value=17 Score=22.53 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=12.6
Q ss_pred hcccccccccchhhccc--cccccccccC
Q psy5220 29 IKCLSCKTILYKNDLKF--NQQVCTKCDY 55 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~--~~~vc~~~~~ 55 (286)
.+|..|+++....-|.. ++.||-+|+-
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CRD 32 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCRD 32 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-S
T ss_pred chHhHhCCHHHHHHHHHhCCccccccccC
Confidence 37889998777665554 4677777753
No 329
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=35.10 E-value=14 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.580 Sum_probs=19.0
Q ss_pred hhhccccccc--ccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKT--ILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~--~~~~~~l~~~~~vc~~~~~~ 56 (286)
+-+|||.|++ .+|.. ....-.|+.|+..
T Consensus 10 ~~VkCp~C~n~q~vFsh--a~t~V~C~~Cg~~ 39 (59)
T PRK00415 10 LKVKCPDCGNEQVVFSH--ASTVVRCLVCGKT 39 (59)
T ss_pred EEEECCCCCCeEEEEec--CCcEEECcccCCC
Confidence 3479999986 45543 3456678888765
No 330
>KOG1812|consensus
Probab=35.07 E-value=15 Score=35.40 Aligned_cols=33 Identities=21% Similarity=0.576 Sum_probs=24.6
Q ss_pred hhhhcccccccccchhhccccccccccccCCCCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
..|.+||+|+..+-..+ .-|...|. |+|++=+.
T Consensus 304 ~~wr~CpkC~~~ie~~~-GCnhm~Cr-C~~~fcy~ 336 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSE-GCNHMTCR-CGHQFCYM 336 (384)
T ss_pred HhcCcCcccceeeeecC-CcceEEee-ccccchhh
Confidence 45999999998774433 25899998 99875443
No 331
>CHL00067 rps2 ribosomal protein S2
Probab=34.93 E-value=49 Score=29.49 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=31.5
Q ss_pred EEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 116 ~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
.-.....|=+|++.|+.- =..++..|...+||+|.++||-
T Consensus 155 i~~m~~~P~~iiv~d~~~------------~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 155 IKYMTKLPDIVIIIDQQE------------EYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred ccccccCCCEEEEeCCcc------------cHHHHHHHHHcCCCEEEEEeCC
Confidence 334556788888888752 1378999999999999999985
No 332
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=34.85 E-value=3.1e+02 Score=24.54 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=39.5
Q ss_pred CcEEEEEEEEcCeeEEEEEEcCcccccC--CChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 110 DALIVIKGSIMNLPLVVAVFEFEFMGGS--MGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 110 ~~vvtG~g~i~G~~v~v~a~d~~~~gGs--~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
.+...-.|+++|++|.++..-..++-+. +|...+.-.+ .++..+++..+|+..++.|+
T Consensus 42 ~~~~~~~G~~~g~~V~v~~sG~~~~~~i~~IGkvnAA~~~--~~li~~~~~~~II~~G~aG~ 101 (249)
T PLN02584 42 VPWVRYSGTHKGLRVHVVCPGKDKALGVDSVGTVPASLVT--YAAIQALKPDLIINAGTAGG 101 (249)
T ss_pred CCeeEEEEEECCEEEEEEecCCccccccCccCHHHHHHHH--HHHHHhcCCCEEEEEecccC
Confidence 3555667899999999988753333333 5654443332 44557899999999998776
No 333
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=34.82 E-value=1.2e+02 Score=27.07 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=33.7
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
|.|..-++.|-|-.+-+.+.+|+.++-++-.+.+..+.+-+|.
T Consensus 134 VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDG 176 (229)
T PRK09722 134 ITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDG 176 (229)
T ss_pred EEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 6666668888888888888888888888777777777777775
No 334
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=34.67 E-value=46 Score=30.30 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=33.2
Q ss_pred EEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 114 VIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 114 tG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
.|+-.....|=+|++.|.. +=..++..|...+||+|.|+||-
T Consensus 149 ~Gi~~m~~~Pd~iii~d~~------------~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 149 GGIKDMGGLPDALFVVDPN------------KEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCccccccCCCEEEEeCCC------------ccHHHHHHHHHhCCCEEEEeeCC
Confidence 4455666788888888864 22478899999999999999985
No 335
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=34.50 E-value=9.6 Score=27.13 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=12.7
Q ss_pred hccccccccccccCCCCC
Q psy5220 42 DLKFNQQVCTKCDYHMQI 59 (286)
Q Consensus 42 ~l~~~~~vc~~~~~~~~~ 59 (286)
+.....-+||+|++.+++
T Consensus 48 ~i~eg~L~Cp~c~r~YPI 65 (68)
T PF03966_consen 48 EIVEGELICPECGREYPI 65 (68)
T ss_dssp ETTTTEEEETTTTEEEEE
T ss_pred cccCCEEEcCCCCCEEeC
Confidence 344567889999887654
No 336
>PRK13796 GTPase YqeH; Provisional
Probab=34.26 E-value=3.1e+02 Score=26.07 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=21.7
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHH-HHHHhCCC---cEEEEEeCCCc
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGA-QISLEQKI---PFVCITATGGA 169 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~-~~A~~~~i---PlV~l~dsgGa 169 (286)
++++.+++|=..-..-... .+++...+ +++.+.++ +++.+..--|.
T Consensus 96 ~kpviLViNK~DLl~~~~~---~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~ 145 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVK---KNKVKNWLRQEAKELGLRPVDVVLISAQKGH 145 (365)
T ss_pred CCCEEEEEEchhhCCCccC---HHHHHHHHHHHHHhcCCCcCcEEEEECCCCC
Confidence 5677777774433322222 23333333 34566676 34544443343
No 337
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=34.19 E-value=13 Score=39.13 Aligned_cols=11 Identities=18% Similarity=0.643 Sum_probs=0.0
Q ss_pred hcccccccccc
Q psy5220 29 IKCLSCKTILY 39 (286)
Q Consensus 29 ~~c~~c~~~~~ 39 (286)
.+||+|+...|
T Consensus 656 r~Cp~Cg~~t~ 666 (900)
T PF03833_consen 656 RRCPKCGKETF 666 (900)
T ss_dssp -----------
T ss_pred ccCcccCCcch
Confidence 35666665444
No 338
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=34.06 E-value=15 Score=31.66 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=19.7
Q ss_pred hhcccccccccchhhccccccccccccCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
..+|+.|+.++-.- .++...||+|++.
T Consensus 149 ~a~~~~~g~~~~~~--~~~~~~c~~~~~~ 175 (189)
T PRK09521 149 YAMCSRCRTPLVKK--GENELKCPNCGNI 175 (189)
T ss_pred EEEccccCCceEEC--CCCEEECCCCCCE
Confidence 56788888877543 4467889988865
No 339
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=33.17 E-value=21 Score=32.43 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=20.2
Q ss_pred hcccccccccchhhccccc-----cccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQ-----QVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~-----~vc~~~~~~ 56 (286)
.+|.+|+...|..++.... -.||+|+..
T Consensus 123 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~ 155 (250)
T COG0846 123 VRCSKCGNQYYDEDVIKFIEDGLIPRCPKCGGP 155 (250)
T ss_pred eEeCCCcCccchhhhhhhcccCCCCcCccCCCc
Confidence 5799999888866643322 349999886
No 340
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=33.05 E-value=23 Score=31.05 Aligned_cols=34 Identities=18% Similarity=0.487 Sum_probs=21.2
Q ss_pred hhcccccccccchhhc-----cccccccccccCCCCCCH
Q psy5220 28 WIKCLSCKTILYKNDL-----KFNQQVCTKCDYHMQIKA 61 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l-----~~~~~vc~~~~~~~~~~a 61 (286)
+.+|..|++..+..++ ....-.||+|+...+.++
T Consensus 109 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP~V 147 (218)
T cd01407 109 RVRCTKCGKEYPRDELQADIDREEVPRCPKCGGLLRPDV 147 (218)
T ss_pred cceeCCCcCCCcHHHHhHhhccCCCCcCCCCCCccCCCe
Confidence 4679899887665442 123457888886644443
No 341
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=33.04 E-value=59 Score=27.06 Aligned_cols=89 Identities=9% Similarity=0.239 Sum_probs=52.1
Q ss_pred ccCCCCCCHHH-HHHhhcCCCc-eEEecCCCCcCC-CCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEc
Q psy5220 53 CDYHMQIKARD-RLNNFLDKNN-FHEIGENILPVD-TLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIM 120 (286)
Q Consensus 53 ~~~~~~~~ar~-ri~~L~D~gs-f~E~~~~~~~~d-~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~ 120 (286)
|+|.+ +..++ .++.|-+.|- +.-++.. +.+ +.+||| |..++.+.-.......+|+ +|.| |+.
T Consensus 7 sDhaG-~~lK~~l~~~L~~~g~eV~D~G~~--~~~~~~dYpd---~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~ 80 (148)
T PRK05571 7 SDHAG-FELKEEIIEHLEELGHEVIDLGPD--SYDASVDYPD---YAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80 (148)
T ss_pred eCCch-HHHHHHHHHHHHHCCCEEEEcCCC--CCCCCCCHHH---HHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCC
Confidence 44543 33333 3445555542 3333332 223 667877 8888888777766667766 5544 889
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHHHHH-HhCCCcEEEEE
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQIS-LEQKIPFVCIT 164 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A-~~~~iPlV~l~ 164 (286)
|.+++++-+. ...++| ...+.-||.|-
T Consensus 81 GIRAA~~~d~-----------------~~A~~ar~hNnaNVL~lG 108 (148)
T PRK05571 81 GIRAALCHDT-----------------YSAHLAREHNNANVLALG 108 (148)
T ss_pred CeEEEEECCH-----------------HHHHHHHHhcCCcEEEEC
Confidence 9998887653 333444 35567777773
No 342
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=32.83 E-value=1e+02 Score=28.03 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCcchhh------chHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Q psy5220 156 QKIPFVCITATGGARMQE------GLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTM 207 (286)
Q Consensus 156 ~~iPlV~l~dsgGa~i~E------g~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~ 207 (286)
.+.|+.++....|.+.++ |.....+..|..+.+....+.++|+|+++..+.+
T Consensus 53 ~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa 110 (256)
T PRK12319 53 AGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGA 110 (256)
T ss_pred CCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence 467999998766643322 3333344567666666666789999999997754
No 343
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=32.60 E-value=14 Score=36.24 Aligned_cols=26 Identities=38% Similarity=1.013 Sum_probs=18.8
Q ss_pred hhhhcccccccccchhhccccccccccccCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.+| +|+.|+..+-. ++ .-.| +|+.|.
T Consensus 129 a~w-~c~~cg~~iea-n~---kp~c-~cg~~~ 154 (593)
T COG2401 129 ALW-RCEKCGTIIEA-NT---KPEC-KCGSHV 154 (593)
T ss_pred EEE-ecchhchhhhh-cC---Cccc-CCCCce
Confidence 478 79999987765 33 3478 898763
No 344
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=32.52 E-value=18 Score=37.99 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=21.8
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHH
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLN 66 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~ 66 (286)
...|+.|+ |...+ ...||+|+.+ .++...||-
T Consensus 680 ~~~C~~CG---~~~~~---~~~CP~CG~~-~~~~~~Ri~ 711 (735)
T PRK07111 680 VDRCPVCG---YLGVI---EDKCPKCGST-NIQRIRRIT 711 (735)
T ss_pred CeecCCCC---CCCCc---CccCcCCCCc-cceeeehhh
Confidence 46899999 33222 3899999974 466666663
No 345
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=32.41 E-value=7.6 Score=28.02 Aligned_cols=30 Identities=23% Similarity=0.723 Sum_probs=19.1
Q ss_pred hhcccccccccchhhccccccccccccCCCCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ 60 (286)
..+| .|+..+|.++ ...-..| .||+..++.
T Consensus 3 ifrC-~Cgr~lya~e-~~kTkkC-~CG~~l~vk 32 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKE-GAKTKKC-VCGKTLKVK 32 (68)
T ss_dssp EEEE-TTS--EEEET-T-SEEEE-TTTEEEE--
T ss_pred EEEe-cCCCEEEecC-CcceeEe-cCCCeeeee
Confidence 3579 7999999987 4457888 699885443
No 346
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=32.37 E-value=3.2e+02 Score=24.12 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=33.2
Q ss_pred CcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 110 DALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 110 ~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
.+..+..|+++|.+|.++..=. |...+.-. +.+++..++.-.|+.+++.|+
T Consensus 43 r~~~~~~G~~~g~~v~v~~tGi-------G~~~aai~--~~eLi~~~~~~~iI~~GtaG~ 93 (235)
T PRK05819 43 RGMLGFTGTYKGKRVSVMGTGM-------GIPSISIY--ANELITDYGVKKLIRVGSCGA 93 (235)
T ss_pred ccEEEEEEEECCEEEEEEecCC-------ChhHHHHH--HHHHHHhcCCcEEEEEecccC
Confidence 3555777899999999987532 22222221 233445688889999987764
No 347
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.37 E-value=16 Score=29.40 Aligned_cols=33 Identities=30% Similarity=0.650 Sum_probs=22.5
Q ss_pred CCchhhhccccccc-ccchhhccccccccccccCC
Q psy5220 23 IPKGLWIKCLSCKT-ILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 23 ~~~~~~~~c~~c~~-~~~~~~l~~~~~vc~~~~~~ 56 (286)
+..++--+||+|++ .+|+--|+ --..|..|++.
T Consensus 16 i~~Gl~grCP~CGeGrLF~gFLK-~~p~C~aCG~d 49 (126)
T COG5349 16 IKRGLRGRCPRCGEGRLFRGFLK-VVPACEACGLD 49 (126)
T ss_pred HHHHhcCCCCCCCCchhhhhhcc-cCchhhhcccc
Confidence 55688889999998 66664433 35666666653
No 348
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=32.13 E-value=20 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.699 Sum_probs=16.6
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.-|.+|+..+-.+ ..+||.|+..
T Consensus 5 kAC~~Ck~l~~~d-----~e~CP~Cgs~ 27 (64)
T COG2093 5 KACKNCKRLTPED-----TEICPVCGST 27 (64)
T ss_pred HHHhhccccCCCC-----CccCCCCCCc
Confidence 4588888766552 4789999876
No 349
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=31.92 E-value=56 Score=27.01 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=52.8
Q ss_pred ccCCCCCCHHHH-HHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCe
Q psy5220 53 CDYHMQIKARDR-LNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNL 122 (286)
Q Consensus 53 ~~~~~~~~ar~r-i~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~ 122 (286)
|+|.+ +..++. ++.|-+.| +.-.+ +++.++.+||| |..++.++-.+.....|++ +|.| |+.|.
T Consensus 7 sDh~G-~~lK~~i~~~L~~~G-~eV~D--~G~~~~~dYpd---~a~~va~~V~~~e~~~GIliCGtGiG~siaANK~~GI 79 (141)
T TIGR01118 7 SDLAG-KRLKDVIKNFLVDNG-FEVID--VTEGDGQDFVD---VTLAVASEVQKDEQNLGIVIDAYGAGSFMVATKIKGM 79 (141)
T ss_pred eCcch-HHHHHHHHHHHHHCC-CEEEE--cCCCCCCCcHH---HHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCe
Confidence 45543 334443 44555555 32222 12245678887 9899988887777777776 4443 78888
Q ss_pred eEEEEEEcCcccccCCChHHHHHHHHHHHHH-HhCCCcEEEEE
Q psy5220 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQIS-LEQKIPFVCIT 164 (286)
Q Consensus 123 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A-~~~~iPlV~l~ 164 (286)
+.+++-+. ...++| ...+.-|+.|-
T Consensus 80 RAA~~~d~-----------------~~A~~ar~hNnaNVL~lG 105 (141)
T TIGR01118 80 IAAEVSDE-----------------RSAYMTRGHNNARMITVG 105 (141)
T ss_pred EEEEECCH-----------------HHHHHHHHHcCCcEEEEC
Confidence 88877553 233444 35667788773
No 350
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=31.80 E-value=20 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=9.1
Q ss_pred Cchhhhcccccccccchhhcccc
Q psy5220 24 PKGLWIKCLSCKTILYKNDLKFN 46 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~~~~~l~~~ 46 (286)
.+.+-.+||.|..+.+.+|+..|
T Consensus 36 ~~~~~~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 36 RDCIGSECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp GGGTTTB-SSS--B-S-SS----
T ss_pred HHhcCCCCCCcCChHHHHHHHhh
Confidence 34455667778777777776554
No 351
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.79 E-value=80 Score=28.68 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=13.9
Q ss_pred HHHHhcCCCCEEEEEcCCc
Q psy5220 188 LTKLSKKKIPFISVLTNPT 206 (286)
Q Consensus 188 ~~~l~~~~vP~Isvv~g~~ 206 (286)
+......++|+|+++.=.|
T Consensus 172 v~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 172 VKEANKLGIPVVALVDTNC 190 (252)
T ss_pred HHHHHHcCCCEEEEecCCC
Confidence 4455667999999987554
No 352
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=31.75 E-value=20 Score=34.02 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.1
Q ss_pred hhhcccccccccchhhccccccccccccCCCCCCHH
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar 62 (286)
..-+|.+|+-..+. .++-||.|++...+.+.
T Consensus 353 ~~YRC~~CGF~a~~-----l~W~CPsC~~W~TikPi 383 (389)
T COG2956 353 PRYRCQNCGFTAHT-----LYWHCPSCRAWETIKPI 383 (389)
T ss_pred CCceecccCCccee-----eeeeCCCcccccccCCc
Confidence 34689999965554 57899999998766553
No 353
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=31.47 E-value=77 Score=29.22 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=22.5
Q ss_pred hCCCcEEEEEeCC-CcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcC-Ccch
Q psy5220 155 EQKIPFVCITATG-GARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTN-PTMG 208 (286)
Q Consensus 155 ~~~iPlV~l~dsg-Ga~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g-~~~G 208 (286)
..+.|+|.+..=| ++.| +. .++..+.. .++|++.||.+ .+||
T Consensus 85 ~Pd~~VV~i~GDG~~f~m--g~------~eL~tA~r----~nl~i~vIV~NN~~yG 128 (286)
T PRK11867 85 NPDLTVIVVTGDGDALAI--GG------NHFIHALR----RNIDITYILFNNQIYG 128 (286)
T ss_pred CCCCcEEEEeCccHHHhC--CH------HHHHHHHH----hCCCcEEEEEeCHHHh
Confidence 3467999887655 3433 22 23333222 36776666664 4455
No 354
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=31.34 E-value=20 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=18.8
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.+|.+|++..-.-+ ..-+.=||.||-+
T Consensus 2 H~Ct~Cg~~f~dgs-~eil~GCP~CGg~ 28 (131)
T PF09845_consen 2 HQCTKCGRVFEDGS-KEILSGCPECGGN 28 (131)
T ss_pred cccCcCCCCcCCCc-HHHHccCcccCCc
Confidence 47999997655433 3467889999765
No 355
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=31.12 E-value=17 Score=31.29 Aligned_cols=28 Identities=25% Similarity=0.634 Sum_probs=21.0
Q ss_pred hcccccccccchhhccccccccccccCCCCCCH
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKA 61 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~a 61 (286)
..|-.|.+... .....||.||++-+...
T Consensus 140 ~rC~GC~~~f~-----~~~~~Cp~CG~~~~~~~ 167 (177)
T COG1439 140 LRCHGCKRIFP-----EPKDFCPICGSPLKRKR 167 (177)
T ss_pred EEEecCceecC-----CCCCcCCCCCCceEEee
Confidence 57999997666 24689999999854443
No 356
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=30.88 E-value=27 Score=37.80 Aligned_cols=96 Identities=13% Similarity=0.245 Sum_probs=52.8
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHHhh---cCCCceEEecCC---------------CCcCC----
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNF---LDKNNFHEIGEN---------------ILPVD---- 85 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L---~D~gsf~E~~~~---------------~~~~d---- 85 (286)
-.+|..|++..-. + ...||+|+....-++.+.|+.| ..+=...=++.+ +.|.+
T Consensus 694 IKrC~dcg~q~~~-~----~~~cP~Cgs~~v~d~~~~ve~lRelA~EvDeVlIgTDPDtEGEKIawDv~~~l~Py~~nik 768 (1187)
T COG1110 694 IKRCRDCGEQFVD-S----EDKCPRCGSRNVEDKTETVEALRELALEVDEILIGTDPDTEGEKIAWDVFNYLRPYNPNVK 768 (1187)
T ss_pred HHHHhhcCceecc-c----cccCCCCCCccccccHHHHHHHHHHHhhcCEEEEcCCCCCccchhHHHHHHhhCcCCCcee
Confidence 3589999976543 2 3499999997666777666654 222111222111 11111
Q ss_pred CCCCCCccchHHHHHHHhhcCCCCCcEEEEE--EEEcCeeEEEEEE
Q psy5220 86 TLNFKDNIKYSERLKLAKKNTNETDALIVIK--GSIMNLPLVVAVF 129 (286)
Q Consensus 86 ~l~f~~~~~y~~~l~~~~~~~~~~~~vvtG~--g~i~G~~v~v~a~ 129 (286)
+..|-.- .=+.-|+..++....++++|-+. =||..|++++--+
T Consensus 769 R~eFHEV-TrrAIleAl~n~r~vd~nlVkAQiVRRIeDRWIGF~LS 813 (1187)
T COG1110 769 RIEFHEV-TRRAILEALKNPRDVDENLVKAQIVRRIEDRWIGFELS 813 (1187)
T ss_pred EEEeeee-cHHHHHHHHhCccccchhhhHHHhhhhhhhcccceeec
Confidence 1122110 01223444455556777777764 5889999998665
No 357
>PRK04023 DNA polymerase II large subunit; Validated
Probab=30.69 E-value=23 Score=38.18 Aligned_cols=8 Identities=50% Similarity=0.933 Sum_probs=3.7
Q ss_pred cccccccc
Q psy5220 30 KCLSCKTI 37 (286)
Q Consensus 30 ~c~~c~~~ 37 (286)
+||+|+..
T Consensus 628 fCpsCG~~ 635 (1121)
T PRK04023 628 KCPSCGKE 635 (1121)
T ss_pred cCCCCCCc
Confidence 44444443
No 358
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=30.48 E-value=20 Score=28.51 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=12.8
Q ss_pred ccccccccchhhccccccccccccC
Q psy5220 31 CLSCKTILYKNDLKFNQQVCTKCDY 55 (286)
Q Consensus 31 c~~c~~~~~~~~l~~~~~vc~~~~~ 55 (286)
||.|+..+... ...|++|+-
T Consensus 1 CPvCg~~l~vt-----~l~C~~C~t 20 (113)
T PF09862_consen 1 CPVCGGELVVT-----RLKCPSCGT 20 (113)
T ss_pred CCCCCCceEEE-----EEEcCCCCC
Confidence 77888766553 245777754
No 359
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=30.38 E-value=1.1e+02 Score=29.99 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCcchhh------chHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Q psy5220 157 KIPFVCITATGGARMQE------GLLSLMQMAKTTAILTKLSKKKIPFISVLTNPT 206 (286)
Q Consensus 157 ~iPlV~l~dsgGa~i~E------g~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~ 206 (286)
+.||.++....|.+.+| |+..-.++.|..+.+......++|+|++|..+.
T Consensus 177 GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpG 232 (431)
T PLN03230 177 GMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPG 232 (431)
T ss_pred CEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 57999887776654433 444344566777766666678999999998765
No 360
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=30.36 E-value=2.2e+02 Score=27.27 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Q psy5220 140 SVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPT 206 (286)
Q Consensus 140 ~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~ 206 (286)
+...+-+..++..|.++++||| +++||..... +++..+.+.+=.... .+|++|.|--
T Consensus 54 ~~~~~~L~~~L~~~~~~gIkvI--~NaGg~np~~-------~a~~v~eia~e~Gl~-lkvA~V~gDd 110 (362)
T PF07287_consen 54 PDFVRDLRPLLPAAAEKGIKVI--TNAGGLNPAG-------CADIVREIARELGLS-LKVAVVYGDD 110 (362)
T ss_pred HHHHHHHHHHHHHHHhCCCCEE--EeCCCCCHHH-------HHHHHHHHHHhcCCC-eeEEEEECcc
Confidence 4445667778888899999996 5777776632 233333222222223 6777777644
No 361
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.33 E-value=80 Score=24.63 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=31.9
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
++-..++|+.+.. | ......++++.|.+.+.|+|.+++..+..+
T Consensus 45 ~~~~dl~I~iS~S----G-----~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 45 LTEKSVVILASHS----G-----NTKETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred CCCCcEEEEEeCC----C-----CChHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 4455666666653 2 235667888999999999999999877555
No 362
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=30.23 E-value=75 Score=24.46 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 144 ERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 144 ~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
+...+.++.|.+.+.|+|.+++.++-.+
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 5677888889999999999999877543
No 363
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=30.11 E-value=86 Score=26.25 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=43.6
Q ss_pred ccCCCCCCHHHHHHhhcCCCceEEecCC-CCcCCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCe
Q psy5220 53 CDYHMQIKARDRLNNFLDKNNFHEIGEN-ILPVDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNL 122 (286)
Q Consensus 53 ~~~~~~~~ar~ri~~L~D~gsf~E~~~~-~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~ 122 (286)
|+|.+.-.-...++.|-+. .++-++-- ..+..+.+||| |..++.++-.....+-+++ +|.| ++.|.
T Consensus 7 ~Dhag~~lK~~I~~~Lk~~-g~~v~D~G~~~~~~~~dyp~---~a~~va~~v~~~~~d~GIliCGTGiG~~iaANKv~Gi 82 (151)
T COG0698 7 SDHAGYELKEIIIDHLKSK-GYEVIDFGTYTDEGSVDYPD---YAKKVAEAVLNGEADLGILICGTGIGMSIAANKVPGI 82 (151)
T ss_pred cCcccHHHHHHHHHHHHHC-CCEEEeccccCCCCCcchHH---HHHHHHHHHHcCCCCeeEEEecCChhHHHHhhccCCe
Confidence 5665433334444555555 34555432 22233567887 8888877776655555554 4444 78899
Q ss_pred eEEEEEEc
Q psy5220 123 PLVVAVFE 130 (286)
Q Consensus 123 ~v~v~a~d 130 (286)
.++++...
T Consensus 83 raAl~~D~ 90 (151)
T COG0698 83 RAALVSDP 90 (151)
T ss_pred EEEEecCH
Confidence 98887664
No 364
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=29.94 E-value=27 Score=33.88 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=18.5
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-...|+.|+..+.. .....||+|++.
T Consensus 214 ~~~~C~~Cd~~~~~----~~~a~CpRC~~~ 239 (403)
T TIGR00155 214 KLRSCSACHTTILP----AQEPVCPRCSTP 239 (403)
T ss_pred CCCcCCCCCCccCC----CCCcCCcCCCCc
Confidence 35579999985532 235689999885
No 365
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=29.73 E-value=77 Score=26.49 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=31.3
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
++...++|+.+-. |. ...+.++++.|.+.++|+|.++++.+..+
T Consensus 73 ~~~~D~vI~iS~s----G~-----t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 73 IGPGDLLIAISGS----GE-----TSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred CCCCCEEEEEcCC----CC-----cHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 4555666666653 22 34567888899999999999999877544
No 366
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=29.72 E-value=87 Score=28.23 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCcEEEEE
Q psy5220 147 IQGAQISLEQKIPFVCIT 164 (286)
Q Consensus 147 ~r~~~~A~~~~iPlV~l~ 164 (286)
.-++.+|.+.+||+++|.
T Consensus 199 ~tA~~l~~~~~i~i~Vfn 216 (238)
T COG0528 199 PTAFSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHHHHcCCcEEEEe
Confidence 467888999999999996
No 367
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=29.70 E-value=25 Score=32.43 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcC-Ccch
Q psy5220 156 QKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTN-PTMG 208 (286)
Q Consensus 156 ~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g-~~~G 208 (286)
.+.|||.+..=||+.+ .| +.++..+.. ..+|++.||.+ ..||
T Consensus 77 pd~~VVai~GDG~~~~-iG------~~eL~tA~r----~nl~i~~IV~NN~~Yg 119 (280)
T PRK11869 77 PELTVIAEGGDGDMYA-EG------GNHLIHAIR----RNPDITVLVHNNQVYG 119 (280)
T ss_pred CCCcEEEEECchHHhh-Cc------HHHHHHHHH----hCcCcEEEEEECHHHh
Confidence 4689999886555332 12 233333322 36777666664 4454
No 368
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=29.58 E-value=69 Score=26.76 Aligned_cols=60 Identities=8% Similarity=0.213 Sum_probs=40.8
Q ss_pred CCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHH-
Q psy5220 84 VDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQIS- 153 (286)
Q Consensus 84 ~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A- 153 (286)
.++.+||| |..++.++-.......+|+ +|.| |+.|.+++++-+. ...++|
T Consensus 41 ~~~~dYp~---~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GIRAa~~~d~-----------------~~A~~ar 100 (151)
T PTZ00215 41 AESVDYPD---FAEKVCEEVLKGEADTGILVCGSGIGISIAANKVKGIRCALCHDH-----------------YTARMSR 100 (151)
T ss_pred CCCCCHHH---HHHHHHHHHhcCCCcEEEEEcCCcHHHHHHHhcCCCeEEEEECCH-----------------HHHHHHH
Confidence 46678887 8888888776666665665 5555 8889998887553 333444
Q ss_pred HhCCCcEEEE
Q psy5220 154 LEQKIPFVCI 163 (286)
Q Consensus 154 ~~~~iPlV~l 163 (286)
...+.-+|.|
T Consensus 101 ~hNnaNVL~l 110 (151)
T PTZ00215 101 QHNNANVLAF 110 (151)
T ss_pred HhcCCcEEEE
Confidence 3556777777
No 369
>KOG4198|consensus
Probab=29.40 E-value=34 Score=31.58 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=37.5
Q ss_pred CCCchhhhcccccccccchhhccccccccccccCCCCCCH-----------HHHHHhhcCCCceEEecCC
Q psy5220 22 SIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKA-----------RDRLNNFLDKNNFHEIGEN 80 (286)
Q Consensus 22 ~~~~~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~a-----------r~ri~~L~D~gsf~E~~~~ 80 (286)
.+-.+-| +||.|+..-|.+ ..+|-+|++...+.+ .+++....|.+++.+....
T Consensus 135 ~~~~GDW-~Cp~C~fhNfar-----n~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~ 198 (280)
T KOG4198|consen 135 PWRSGDW-ECPGCNFHNFAR-----NSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESL 198 (280)
T ss_pred CccccCc-ccCCCCceeccc-----cchhhhcCCcCcccccccccccccccccccccccccccceecccc
Confidence 3556788 699999888874 478999998876644 4566666666666665553
No 370
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.39 E-value=97 Score=26.96 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEE-EeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhccc
Q psy5220 140 SVVGERFIQGAQISLEQKIPFVCI-TATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAF 216 (286)
Q Consensus 140 ~~~~~K~~r~~~~A~~~~iPlV~l-~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a~ 216 (286)
.+-++++.|....+-+-+-|||.+ .|++|..- .. .+..+. .+ -.|-+|.||++=||++.+++
T Consensus 87 dd~gdRlars~~~a~~~~~~VliIg~DcP~lt~--el-----La~a~t---aL-----~~~paVLGpa~dGGy~llgL 149 (211)
T COG3222 87 DDLGDRLARSHVDAFDGSYPVLIIGMDCPGLTA--EL-----LADAFT---AL-----LQIPAVLGPAFDGGYYLLGL 149 (211)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEecCCCccCH--HH-----HHHHHH---HH-----hcCcceecccccCcEEEEEe
Confidence 366788888888887777898888 78988642 01 123233 23 22447899999999876664
No 371
>COG4640 Predicted membrane protein [Function unknown]
Probab=29.34 E-value=25 Score=33.96 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=15.2
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-||.||..-.. ...+ |++|||.
T Consensus 3 fC~kcG~qk~E----d~~q-C~qCG~~ 24 (465)
T COG4640 3 FCPKCGSQKAE----DDVQ-CTQCGHK 24 (465)
T ss_pred ccccccccccc----cccc-ccccCCc
Confidence 59999954332 2234 9999997
No 372
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=29.34 E-value=1.2e+02 Score=28.51 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCcchhh------chHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Q psy5220 156 QKIPFVCITATGGARMQE------GLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTM 207 (286)
Q Consensus 156 ~~iPlV~l~dsgGa~i~E------g~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~ 207 (286)
.+.||.++..-.|.+..| |.....++.|..+.+......++|+|+++..+.+
T Consensus 109 ~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA 166 (322)
T CHL00198 109 NGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGA 166 (322)
T ss_pred CCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 367999997766644332 3333344567666666666789999999998763
No 373
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=29.02 E-value=1.1e+02 Score=26.72 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=19.6
Q ss_pred CCCcEEEEEeCCCcchhhchHhHHH
Q psy5220 156 QKIPFVCITATGGARMQEGLLSLMQ 180 (286)
Q Consensus 156 ~~iPlV~l~dsgGa~i~Eg~~~l~~ 180 (286)
+++|+++|.|+.|-.+.|-+..++.
T Consensus 2 rRlP~~lllDtSgSM~Ge~IealN~ 26 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEALNA 26 (207)
T ss_pred CCCCEEEEEecCcccccccHHHHHH
Confidence 6899999999999877766655543
No 374
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=28.88 E-value=19 Score=20.51 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=6.7
Q ss_pred cccccccccchhhcc
Q psy5220 30 KCLSCKTILYKNDLK 44 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~ 44 (286)
.||.|+.....+.|+
T Consensus 4 ~C~~CgR~F~~~~l~ 18 (25)
T PF13913_consen 4 PCPICGRKFNPDRLE 18 (25)
T ss_pred cCCCCCCEECHHHHH
Confidence 455555444443333
No 375
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=28.72 E-value=2.6e+02 Score=24.73 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=34.5
Q ss_pred CCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 109 TDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 109 ~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
..+..+..|+++|.+|.++.+= ||...+.- -+.++...++.-.|+.+++.|+
T Consensus 43 ~~~~~~~~G~~~g~~v~v~~~G-------iG~~~Aai--~~~eLi~~~g~~~iI~~GtaG~ 94 (233)
T PRK13374 43 VRNMFGFTGTYKGKKVSVMGHG-------MGIPSMVI--YVHELIATFGVKNIIRVGSCGA 94 (233)
T ss_pred ccceEEEEEEECCEEEEEEeCC-------CCHhHHHH--HHHHHHHHcCCcEEEEEecccc
Confidence 3455677889999999987653 23333222 2344555678888888888775
No 376
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=28.68 E-value=18 Score=39.77 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=5.5
Q ss_pred cccccccCC
Q psy5220 48 QVCTKCDYH 56 (286)
Q Consensus 48 ~vc~~~~~~ 56 (286)
..||+|+..
T Consensus 710 ~~CP~CGtp 718 (1337)
T PRK14714 710 VECPRCDVE 718 (1337)
T ss_pred ccCCCCCCc
Confidence 457777644
No 377
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.51 E-value=1.4e+02 Score=29.10 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHHHhCC-CcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcchhhhhhcc-c
Q psy5220 139 GSVVGERFIQGAQISLEQK-IPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFA-F 216 (286)
Q Consensus 139 ~~~~~~K~~r~~~~A~~~~-iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~GGg~~s~a-~ 216 (286)
|......++++++.+++.+ .=+|++.-.||..- ....++. ..+.++ +.++++|+||.|=...= ..++ +
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs~e--DL~~Fn~-e~~~ra---i~~~~~Pvis~iGHe~D----~ti~D~ 237 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGSLE--DLWSFND-EKVARA---IFLSKIPIISAVGHETD----FTISDF 237 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHH--HhhhcCc-HHHHHH---HHcCCCCEEEecCcCCC----ccHHHH
Confidence 4566778888888877544 56777777776531 1111111 123333 34679999997532210 1111 4
Q ss_pred cccEEEEcCCcEEEeeChh
Q psy5220 217 MGDIVIAEPGALIGFAGPR 235 (286)
Q Consensus 217 ~~d~via~~~A~i~~~gp~ 235 (286)
.+|...++|+|-.-+.-|.
T Consensus 238 vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 238 VADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred hhhccCCCcHHHHHHhCcc
Confidence 5788889998754444443
No 378
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.47 E-value=29 Score=29.13 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=22.4
Q ss_pred hhhhcccccccccchhhcc-------c---cccccccccCCCCCCHH
Q psy5220 26 GLWIKCLSCKTILYKNDLK-------F---NQQVCTKCDYHMQIKAR 62 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~-------~---~~~vc~~~~~~~~~~ar 62 (286)
..-.+||+|+..+-..... . --..|.+||++.+++-+
T Consensus 37 ~tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~ 83 (158)
T PF10083_consen 37 KTITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTEN 83 (158)
T ss_pred HHHHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHH
Confidence 3457888888755332111 1 13468889998877644
No 379
>KOG0801|consensus
Probab=28.45 E-value=21 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.635 Sum_probs=24.4
Q ss_pred CCCchhh----hcccccccccchhhccccccccc
Q psy5220 22 SIPKGLW----IKCLSCKTILYKNDLKFNQQVCT 51 (286)
Q Consensus 22 ~~~~~~~----~~c~~c~~~~~~~~l~~~~~vc~ 51 (286)
.+|-.+| .|||.|++.+..+|.+-.+-.|-
T Consensus 128 slP~hi~~~~g~KCPvC~K~V~sDd~e~HlvMCL 161 (205)
T KOG0801|consen 128 SLPVHIMDHSGMKCPVCHKVVPSDDAEIHLVMCL 161 (205)
T ss_pred ccceeeeccCCccCCccccccCCCcceEEEEEEe
Confidence 4777777 69999999999998887777764
No 380
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=28.32 E-value=1.3e+02 Score=28.29 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCcchhh------chHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Q psy5220 157 KIPFVCITATGGARMQE------GLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTM 207 (286)
Q Consensus 157 ~iPlV~l~dsgGa~i~E------g~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~ 207 (286)
+.|+.++.+-.|-+.+| |.....+..|..+.+......++|+|+++..|.+
T Consensus 107 GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa 163 (319)
T PRK05724 107 GRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGA 163 (319)
T ss_pred CEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 68999998776644322 3332344566666666666789999999997763
No 381
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=28.17 E-value=14 Score=33.29 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=10.3
Q ss_pred hhcccccccc-cch--hhccccccccccccCCC
Q psy5220 28 WIKCLSCKTI-LYK--NDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 28 ~~~c~~c~~~-~~~--~~l~~~~~vc~~~~~~~ 57 (286)
+..||.|+.. +.. ..--.-...|+.|++.+
T Consensus 31 n~yCP~Cg~~~L~~f~NN~PVaDF~C~~C~eey 63 (254)
T PF06044_consen 31 NMYCPNCGSKPLSKFENNRPVADFYCPNCNEEY 63 (254)
T ss_dssp H---TTT--SS-EE--------EEE-TTT--EE
T ss_pred CCcCCCCCChhHhhccCCCccceeECCCCchHH
Confidence 3679999975 322 11111357899998763
No 382
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.97 E-value=28 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHH
Q psy5220 59 IKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLA 102 (286)
Q Consensus 59 ~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~ 102 (286)
+++|.||..++..- . -+|++...|.+-|++.
T Consensus 72 V~iRkrv~~i~Nk~------e-------~dF~~l~~yNdYLE~v 102 (309)
T TIGR00570 72 VDIRKRVLKIYNKR------E-------EDFPSLREYNDYLEEV 102 (309)
T ss_pred HHHHHHHHHHHccc------h-------hccCCHHHHHHHHHHH
Confidence 67899998888741 1 1566656677777763
No 383
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=27.96 E-value=39 Score=28.42 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=34.9
Q ss_pred CCCHHHHHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhc
Q psy5220 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKN 105 (286)
Q Consensus 58 ~~~ar~ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~ 105 (286)
-..||+.|..++-.|+|-.+.- +|++|. ..|.+++++.+.+
T Consensus 109 FPYaR~~Is~~t~~ggFPpl~L-----~PInF~--aly~~~~~e~~~~ 149 (157)
T COG1952 109 FPYARELISDLTARGGFPPLML-----APINFD--ALYAQRLAEQQAE 149 (157)
T ss_pred hHHHHHHHHHHhhcCCCCcccc-----CCcCHH--HHHHHHHHHHHHH
Confidence 3679999999999999999876 789995 4799999988753
No 384
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=27.81 E-value=57 Score=28.47 Aligned_cols=35 Identities=29% Similarity=0.218 Sum_probs=26.4
Q ss_pred eeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Q psy5220 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGG 168 (286)
Q Consensus 122 ~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgG 168 (286)
.|=++++.|+.. =..++..|.+.+||+|.|+||--
T Consensus 108 ~Pdlliv~dp~~------------~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRA------------DHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCcc------------ccHHHHHHHHcCCCEEEEeeCCC
Confidence 455666666542 24788999999999999999853
No 385
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=27.73 E-value=44 Score=32.63 Aligned_cols=25 Identities=32% Similarity=0.691 Sum_probs=17.9
Q ss_pred hhhcccccccccchhhccccccccccccCC
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-...|+.|+..... ....||+|+++
T Consensus 220 ~l~~C~~Cd~l~~~-----~~a~CpRC~~~ 244 (419)
T PRK15103 220 GLRSCSCCTAILPA-----DQPVCPRCHTK 244 (419)
T ss_pred CCCcCCCCCCCCCC-----CCCCCCCCCCc
Confidence 35679999986422 23589999885
No 386
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=27.68 E-value=57 Score=28.68 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=26.1
Q ss_pred eeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 122 ~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
.|=++++.|.. +=..++..|.+.+||+|.|+||-
T Consensus 114 ~Pdliiv~dp~------------~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPR------------GDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCc------------ccHHHHHHHHHhCCCEEEEEeCC
Confidence 45566666653 22578899999999999999986
No 387
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=27.59 E-value=32 Score=29.41 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=18.9
Q ss_pred hhhhcccccccccchhhccccccccccccCCCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQI 59 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~ 59 (286)
..-+-|..|+..-++ -.-||+|+.+++.
T Consensus 160 ~hcilCtvCe~r~w~------g~~CPKCGr~G~p 187 (200)
T PF12387_consen 160 KHCILCTVCEGREWK------GGNCPKCGRHGKP 187 (200)
T ss_pred CceEEEeeeecCccC------CCCCCcccCCCCC
Confidence 344667778754332 3559999999874
No 388
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=27.55 E-value=1.4e+02 Score=28.12 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=35.0
Q ss_pred CCCcEEEEEeCCCcchhh------chHhHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Q psy5220 156 QKIPFVCITATGGARMQE------GLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTM 207 (286)
Q Consensus 156 ~~iPlV~l~dsgGa~i~E------g~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~~~ 207 (286)
.+.|+.++.+-.|-+..| |.....+..|..+.+......++|+|+++..|.+
T Consensus 106 ~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa 163 (316)
T TIGR00513 106 DGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGA 163 (316)
T ss_pred CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCC
Confidence 367999997766643322 3333344566666666666789999999998764
No 389
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=27.20 E-value=32 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=18.8
Q ss_pred hhhhcccccccccchhhccccccccccccCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
...-|||+|..+-. ......||+|+...
T Consensus 55 ~~i~kC~~c~~~~~----y~~~~~C~~cg~~~ 82 (415)
T COG5257 55 AKIYKCPECYRPEC----YTTEPKCPNCGAET 82 (415)
T ss_pred CceEeCCCCCCCcc----cccCCCCCCCCCCc
Confidence 34569999997511 22357899998874
No 390
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=27.19 E-value=21 Score=25.67 Aligned_cols=27 Identities=22% Similarity=0.651 Sum_probs=18.3
Q ss_pred hhhccccccc--ccchhhccccccccccccC
Q psy5220 27 LWIKCLSCKT--ILYKNDLKFNQQVCTKCDY 55 (286)
Q Consensus 27 ~~~~c~~c~~--~~~~~~l~~~~~vc~~~~~ 55 (286)
+.+|||.|+. .+|.. ....-.|..|+.
T Consensus 18 l~VkCpdC~N~q~vFsh--ast~V~C~~CG~ 46 (67)
T COG2051 18 LRVKCPDCGNEQVVFSH--ASTVVTCLICGT 46 (67)
T ss_pred EEEECCCCCCEEEEecc--CceEEEeccccc
Confidence 4589999996 55553 334567888875
No 391
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=27.18 E-value=28 Score=29.53 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCc
Q psy5220 181 MAKTTAILTKLSKKKIPFISVLTNPT 206 (286)
Q Consensus 181 ~~~~~~a~~~l~~~~vP~Isvv~g~~ 206 (286)
+.++...+..+.+...|.--++..|+
T Consensus 123 ~~~~l~kL~~~~~g~~pfTlIldDP~ 148 (163)
T TIGR00340 123 CEEILKRIREVIEGKFKFTLIIEDPF 148 (163)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 34555566677666667665555553
No 392
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=27.01 E-value=30 Score=35.73 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=15.2
Q ss_pred hcccccccccchhhccccccccccccCCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.+||+|+..+-. +..-||+||+.-
T Consensus 28 ~~Cp~CG~~~~~-----~~~fC~~CG~~~ 51 (645)
T PRK14559 28 KPCPQCGTEVPV-----DEAHCPNCGAET 51 (645)
T ss_pred CcCCCCCCCCCc-----ccccccccCCcc
Confidence 357777765433 356788887773
No 393
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=26.99 E-value=1.1e+02 Score=30.81 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=43.8
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHH--HHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERF--IQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~--~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
.+...|.+.-+|++--.|.+.+.-+.|. .++.+.|.+.++|+-.|.+.||.
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgs 254 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSL 254 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCC
Confidence 5568999999999999999988876654 57888999999999999998863
No 394
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=26.92 E-value=1.1e+02 Score=28.37 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=48.6
Q ss_pred Ccchhhh--hhccc-cccEEEEcCCcEEEeeChhhhhhh--hhccCC-CCCCCHHHHHHcCccceEeCc--hhHHHHHHH
Q psy5220 205 PTMGGVS--ASFAF-MGDIVIAEPGALIGFAGPRVIKNT--VKEKLP-DGFQSSEFLLKKGALDMIIDR--RKLRFKIAN 276 (286)
Q Consensus 205 ~~~GGg~--~s~a~-~~d~via~~~A~i~~~gp~vi~~~--~g~~l~-~~~~~A~~~~~~G~vD~Vv~~--~e~~~~l~~ 276 (286)
|-|||.. +-||. ..|+++++|+= -++.++.++.+ .|-++. ++... .++|-+.....| ..+...++.
T Consensus 29 ~PyGGa~mAiefAeAGHDVVLaePn~--d~~dd~~w~~vedAGV~vv~dD~ea----a~~~Ei~VLFTPFGk~T~~Iare 102 (340)
T COG4007 29 PPYGGARMAIEFAEAGHDVVLAEPNR--DIMDDEHWKRVEDAGVEVVSDDAEA----AEHGEIHVLFTPFGKATFGIARE 102 (340)
T ss_pred CCCCchHHHHHHHHcCCcEEeecCCc--cccCHHHHHHHHhcCcEEecCchhh----hhcceEEEEecccchhhHHHHHH
Confidence 3366653 33443 45999999974 45667665554 244443 33333 378888888888 378889999
Q ss_pred HHHHHhcC
Q psy5220 277 LLALLQKK 284 (286)
Q Consensus 277 ~L~~l~~~ 284 (286)
+++.++.+
T Consensus 103 i~~hvpEg 110 (340)
T COG4007 103 ILEHVPEG 110 (340)
T ss_pred HHhhCcCC
Confidence 99888754
No 395
>PF11475 VP_N-CPKC: Virion protein N terminal domain ; InterPro: IPR021573 This is the N-terminal domain of a family of virion proteins which contains a zinc finger domain. Currently no function is known. ; PDB: 2BAI_A.
Probab=26.84 E-value=17 Score=21.62 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=11.1
Q ss_pred hhhcccccccccchh
Q psy5220 27 LWIKCLSCKTILYKN 41 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~ 41 (286)
.+..||+|...-|++
T Consensus 15 tf~ecpkcsalqyrn 29 (32)
T PF11475_consen 15 TFEECPKCSALQYRN 29 (32)
T ss_dssp -GGGHHHHH-SSSTT
T ss_pred ccccCcchhHhhhhc
Confidence 477899999888875
No 396
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=26.82 E-value=27 Score=22.09 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=16.1
Q ss_pred hcccccccccchhhccc-ccccccc---ccCC
Q psy5220 29 IKCLSCKTILYKNDLKF-NQQVCTK---CDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~-~~~vc~~---~~~~ 56 (286)
.+||.|+..+..+.-.. .+..|.. |++.
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~yP~C~~~ 33 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSNYPECKYT 33 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCCCCCcCCe
Confidence 47999998666554332 3445533 5544
No 397
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=26.69 E-value=22 Score=30.98 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=19.1
Q ss_pred hhhhcccccccccchhhccc-----cccccccccCCC
Q psy5220 26 GLWIKCLSCKTILYKNDLKF-----NQQVCTKCDYHM 57 (286)
Q Consensus 26 ~~~~~c~~c~~~~~~~~l~~-----~~~vc~~~~~~~ 57 (286)
.....||+|+..=...++-+ -+.-|+.|++=.
T Consensus 4 ~iy~~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~V~ 40 (201)
T COG1326 4 EIYIECPSCGSEEVSHEVIKERGREPLVRCEECGTVH 40 (201)
T ss_pred eEEEECCCCCcchhhHHHHHhcCCceEEEccCCCcEe
Confidence 35678999993222112222 266799998764
No 398
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.61 E-value=98 Score=23.84 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=31.2
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGAR 170 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~ 170 (286)
++-..++|+.+.. |. ...+.++++.|.+.+.|+|.+++.+...
T Consensus 44 ~~~~d~~I~iS~s----G~-----t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 44 LDEDTLVIAISQS----GE-----TADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CCCCcEEEEEeCC----cC-----CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 5556667766653 22 2357888999999999999999987643
No 399
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=26.53 E-value=76 Score=29.54 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcC-Ccch
Q psy5220 156 QKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTN-PTMG 208 (286)
Q Consensus 156 ~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g-~~~G 208 (286)
.+.|||.+..=|++. ..+ +.++..+. +..+|++.||.+ ..||
T Consensus 87 pd~~VV~i~GDG~~~-~mg------~~eL~tA~----r~nl~i~vIV~NN~~YG 129 (301)
T PRK05778 87 PDLEVIVVGGDGDLA-SIG------GGHFIHAG----RRNIDITVIVENNGIYG 129 (301)
T ss_pred CCCcEEEEeCccHHH-hcc------HHHHHHHH----HHCCCcEEEEEeCchhh
Confidence 567888887655542 112 22333322 135676666654 5555
No 400
>KOG2767|consensus
Probab=26.40 E-value=25 Score=33.44 Aligned_cols=39 Identities=18% Similarity=0.569 Sum_probs=28.4
Q ss_pred hhcccccccc----cchhhccccccccccccCCCCCCHHHHHHh
Q psy5220 28 WIKCLSCKTI----LYKNDLKFNQQVCTKCDYHMQIKARDRLNN 67 (286)
Q Consensus 28 ~~~c~~c~~~----~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~ 67 (286)
++.||.|+.+ +-+++ .....-|--||+++.++.|.-|..
T Consensus 96 FVlC~~C~NPETel~itk~-q~i~~~CkACG~r~~~d~rhKLs~ 138 (400)
T KOG2767|consen 96 FVLCPSCENPETELIITKK-QTISLKCKACGFRSDMDLRHKLST 138 (400)
T ss_pred heeCcCCCCCceeEEeccc-chhhhHHHHcCCcccccchhhhcc
Confidence 6899999973 22221 123467889999999999998864
No 401
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=26.33 E-value=5.6e+02 Score=24.19 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=22.6
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHH-HHHHhCCCc---EEEEEeCCC
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGA-QISLEQKIP---FVCITATGG 168 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~-~~A~~~~iP---lV~l~dsgG 168 (286)
+.++.+++|=.....-... .+++...+ +++.+.+++ ++.+...-|
T Consensus 90 ~~piilV~NK~DLl~k~~~---~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g 138 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVN---LSKIKEWMKKRAKELGLKPVDIILVSAKKG 138 (360)
T ss_pred CCCEEEEEEchhhCCCCCC---HHHHHHHHHHHHHHcCCCcCcEEEecCCCC
Confidence 5788888884443322222 23333333 346677774 444444334
No 402
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=26.25 E-value=32 Score=28.69 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=21.6
Q ss_pred EEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 114 VIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 114 tG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
.|++++.|++.+++.+- |+ +..-..-.+-.|...++|+|+|+...
T Consensus 56 ~g~ar~~g~~~v~~~~~--------Gp-G~~n~~~~l~~A~~~~~Pvl~i~g~~ 100 (172)
T PF02776_consen 56 DGYARATGRPGVVIVTS--------GP-GATNALTGLANAYADRIPVLVITGQR 100 (172)
T ss_dssp HHHHHHHSSEEEEEEET--------TH-HHHTTHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHhhccceEEEeec--------cc-chHHHHHHHhhcccceeeEEEEeccc
Confidence 34555666666666554 12 12222333333555566666665543
No 403
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=26.16 E-value=1.4e+02 Score=25.14 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=28.4
Q ss_pred HHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy5220 149 GAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNP 205 (286)
Q Consensus 149 ~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g~ 205 (286)
..++|...+.|+|++.+.....+ .++...++.+.+.++++..+|.+.
T Consensus 121 n~dia~~L~a~vIlV~~~~~g~i----------~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 121 NADIAKALGAPVILVASGRLGTI----------NHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp HHHHHHHHT-EEEEEEESSTTHH----------HHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCH----------HHHHHHHHHHHhcCCCEEEEEEEC
Confidence 34667777889888887754322 222333455556678888888776
No 404
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=26.06 E-value=14 Score=24.88 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=5.2
Q ss_pred hhccccccc
Q psy5220 28 WIKCLSCKT 36 (286)
Q Consensus 28 ~~~c~~c~~ 36 (286)
..+||+|+.
T Consensus 13 Y~~Cp~CGN 21 (49)
T PF12677_consen 13 YCKCPKCGN 21 (49)
T ss_pred hccCcccCC
Confidence 456666654
No 405
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.95 E-value=29 Score=23.52 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=15.2
Q ss_pred hcccc--cccccchhhccccc-cccccccCC
Q psy5220 29 IKCLS--CKTILYKNDLKFNQ-QVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~--c~~~~~~~~l~~~~-~vc~~~~~~ 56 (286)
..||. |+..+...+..... ..|+.|++.
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~ 49 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTE 49 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSE
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCc
Confidence 58988 99988887644321 789988765
No 406
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=25.75 E-value=81 Score=26.95 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=31.8
Q ss_pred CCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCeeEEEEEEc
Q psy5220 84 VDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNLPLVVAVFE 130 (286)
Q Consensus 84 ~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~~v~v~a~d 130 (286)
.++.+||| |..++.++-.+.....+|+ +|.| ++.|..++++.+.
T Consensus 37 ~~~~dYpd---~a~~va~~V~~g~~d~GIliCGTGiG~siaANK~~GIRAA~~~d~ 89 (171)
T PRK12615 37 HTRTHYPI---FGKKVGEAVVNGQADLGVCICGTGVGINNAVNKVPGIRSALVRDM 89 (171)
T ss_pred CCCCChHH---HHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEEeCCH
Confidence 45678887 8888888877766666765 4544 7889888887653
No 407
>PLN02408 phospholipase A1
Probab=25.69 E-value=1.6e+02 Score=28.29 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=24.2
Q ss_pred EEEcCCcchhhhhhccccccEEEEcCC----cEEEeeChhh
Q psy5220 200 SVLTNPTMGGVSASFAFMGDIVIAEPG----ALIGFAGPRV 236 (286)
Q Consensus 200 svv~g~~~GGg~~s~a~~~d~via~~~----A~i~~~gp~v 236 (286)
-+|||.+.||+.+.++ +.|+....++ ..+.|.+|++
T Consensus 202 I~vTGHSLGGALAtLa-A~dl~~~~~~~~~V~v~tFGsPRV 241 (365)
T PLN02408 202 LTITGHSLGAALATLT-AYDIKTTFKRAPMVTVISFGGPRV 241 (365)
T ss_pred EEEeccchHHHHHHHH-HHHHHHhcCCCCceEEEEcCCCCc
Confidence 4689999999976665 3454333222 2578889988
No 408
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=25.57 E-value=18 Score=36.60 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=16.8
Q ss_pred cccccccccchhhccccccccccccCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.|+.|+.... .....||+|+.+.
T Consensus 520 ~C~~CG~~~~-----~~~~~CP~CGs~~ 542 (555)
T cd01675 520 ICNDCGYIGE-----GEGFKCPKCGSED 542 (555)
T ss_pred cCCCCCCCCc-----CCCCCCcCCCCcC
Confidence 8999995332 2368999999763
No 409
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=25.30 E-value=36 Score=34.63 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=21.5
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHH
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLN 66 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~ 66 (286)
...|+.|+. .-+ .....||+|+.+. ++...||-
T Consensus 524 ~~~C~~CG~---~g~--~~~~~CP~Cgs~~-~~~~~Rv~ 556 (579)
T TIGR02487 524 VDVCEDCGY---TGE--GLNDKCPKCGSHD-IEVISRIT 556 (579)
T ss_pred CccCCCCCC---CCC--CCCCcCcCCCCcc-ceehhhhh
Confidence 368999994 211 1237999999764 66666653
No 410
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=25.27 E-value=61 Score=27.94 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=29.4
Q ss_pred EEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 118 ~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
.....|=.|+..|.. +=..++..|...+||+|.++||.
T Consensus 123 ~~~~~Pdlviv~~~~------------~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 123 DMFRLPDLVIVLDPR------------KEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccccCCCEEEEeCCc------------cchHHHHHHHHcCCCEEEEecCC
Confidence 345667777777753 22578899999999999999986
No 411
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=25.14 E-value=30 Score=30.56 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=17.9
Q ss_pred hccccccc--ccchhhccc-cccccccccCCC
Q psy5220 29 IKCLSCKT--ILYKNDLKF-NQQVCTKCDYHM 57 (286)
Q Consensus 29 ~~c~~c~~--~~~~~~l~~-~~~vc~~~~~~~ 57 (286)
.-||+|.. -+|+..-.. +.++||.|.+..
T Consensus 193 lIC~~C~hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 193 LICPQCHHHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred hccccccccccccccccccchheecccchhhc
Confidence 46888875 334332122 458999998874
No 412
>KOG1618|consensus
Probab=25.12 E-value=60 Score=30.75 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHHHHHHH-HHHHhCCCcEEEEEeCCCc
Q psy5220 143 GERFIQGA-QISLEQKIPFVCITATGGA 169 (286)
Q Consensus 143 ~~K~~r~~-~~A~~~~iPlV~l~dsgGa 169 (286)
+.|..+++ +--.+++||.|+|++.||.
T Consensus 56 ~~~Alr~L~~~~g~lkIP~vfLTNGGg~ 83 (389)
T KOG1618|consen 56 ALKALRRLVDNQGQLKIPFVFLTNGGGI 83 (389)
T ss_pred hHHHHHHHHhcCCCeeccEEEEeCCCCc
Confidence 33444443 3334679999999999885
No 413
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=25.12 E-value=2e+02 Score=23.77 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=31.0
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHHH-HHHhCCCcEEEEEeCC
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQ-ISLEQKIPFVCITATG 167 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~-~A~~~~iPlV~l~dsg 167 (286)
|..++|+.|+..+-.| ++....+.+.+-++ ++.+.++|+.++..+.
T Consensus 45 Gy~IvIvTNQ~gi~~~-~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~ 91 (159)
T PF08645_consen 45 GYKIVIVTNQSGIGRG-MGEKDLENFHEKIENILKELGIPIQVYAAPH 91 (159)
T ss_dssp TEEEEEEEE-CCCCCT-BTCCHHHHHHHHHHHHHHHCTS-EEEEECGC
T ss_pred CCeEEEEeCccccccc-cccchHHHHHHHHHHHHHHcCCceEEEecCC
Confidence 7899999999877666 55556555544444 4678999987776543
No 414
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=25.03 E-value=30 Score=32.19 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=20.1
Q ss_pred hccccccc--ccchh-------hccccccccccccCCCCC
Q psy5220 29 IKCLSCKT--ILYKN-------DLKFNQQVCTKCDYHMQI 59 (286)
Q Consensus 29 ~~c~~c~~--~~~~~-------~l~~~~~vc~~~~~~~~~ 59 (286)
.+||+|+. ..|.+ +-...+++|..|+|+.++
T Consensus 259 ~~C~~C~~~~~~~~q~QtrsaDEpmT~f~~C~~Cg~~w~f 298 (299)
T TIGR01385 259 FTCGKCKQKKCTYYQLQTRSADEPMTTFVTCEECGNRWKF 298 (299)
T ss_pred ccCCCCCCccceEEEecccCCCCCCeEEEEcCCCCCeeee
Confidence 58999986 33321 112357799999998653
No 415
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=25.00 E-value=2.1e+02 Score=26.03 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=32.7
Q ss_pred EEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 116 ~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
+|+++|++|+++..-....-|-.-. .+..-+++..++++-.|+.+++.|.
T Consensus 67 ~G~l~g~~Vv~~~g~~H~yeG~~~~----~~~a~i~~l~~lGv~~II~tgaaGs 116 (272)
T PRK08202 67 LGRLGGKPVLAMQGRFHYYEGYSME----AVTFPVRVMKALGVETLIVTNAAGG 116 (272)
T ss_pred EEEECCEEEEEEccCCcccCCCCHH----HHHHHHHHHHHcCCCEEEEeccccc
Confidence 5789999999987332222122222 2334466778999999999887764
No 416
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.91 E-value=33 Score=31.96 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=8.2
Q ss_pred hhhhccccccccc
Q psy5220 26 GLWIKCLSCKTIL 38 (286)
Q Consensus 26 ~~~~~c~~c~~~~ 38 (286)
++-.|||-|+..+
T Consensus 272 ~i~LkCplc~~Ll 284 (427)
T COG5222 272 NISLKCPLCHCLL 284 (427)
T ss_pred CccccCcchhhhh
Confidence 4447888777543
No 417
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=24.75 E-value=39 Score=29.63 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=21.0
Q ss_pred hcccccccccchhhcc--ccccccccccCCCCCCH
Q psy5220 29 IKCLSCKTILYKNDLK--FNQQVCTKCDYHMQIKA 61 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~--~~~~vc~~~~~~~~~~a 61 (286)
..|..|++..+..+.. ...-.||+|+...+.++
T Consensus 110 ~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~lrp~V 144 (224)
T cd01412 110 VRCSSCGYVGENNEEIPEEELPRCPKCGGLLRPGV 144 (224)
T ss_pred cccCCCCCCCCcchhhhccCCCCCCCCCCccCCce
Confidence 5788898876654221 22457888887655554
No 418
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=24.74 E-value=68 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=27.5
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
+.-.|=.|+..|+..- ..++..|...++|+|.++||.
T Consensus 140 l~~~P~~vii~~~~~~------------~~~i~Ea~~l~IP~i~i~Dtn 176 (211)
T PF00318_consen 140 LKKLPDLVIILDPNKN------------KNAIREANKLNIPTIAIVDTN 176 (211)
T ss_dssp CSSSBSEEEESSTTTT------------HHHHHHHHHTTS-EEEEESTT
T ss_pred ccccCcEEEEeccccc------------chhHHHHHhcCceEEEeecCC
Confidence 3344667777776422 578999999999999999985
No 419
>PF14149 YhfH: YhfH-like protein
Probab=24.59 E-value=20 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=15.5
Q ss_pred hcccccccccchhhccccccccccc
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKC 53 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~ 53 (286)
.+|+.||+.+-.+. +.-...|.+|
T Consensus 14 K~C~~CG~~i~EQ~-E~Y~n~C~~C 37 (37)
T PF14149_consen 14 KKCTECGKEIEEQA-ECYGNECDRC 37 (37)
T ss_pred cccHHHHHHHHHHH-HHHhCcCCCC
Confidence 47999999877653 3334555554
No 420
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=24.51 E-value=36 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.623 Sum_probs=18.5
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-+|.+||-......+. --.-||+|...
T Consensus 59 a~CkkCGfef~~~~ik-~pSRCP~CKSE 85 (97)
T COG3357 59 ARCKKCGFEFRDDKIK-KPSRCPKCKSE 85 (97)
T ss_pred hhhcccCccccccccC-CcccCCcchhh
Confidence 3788888766664443 26889999754
No 421
>PF10005 DUF2248: Uncharacterized protein conserved in bacteria (DUF2248); InterPro: IPR011201 This is a family of uncharacterised bacterial proteins.
Probab=24.51 E-value=36 Score=32.26 Aligned_cols=23 Identities=17% Similarity=0.626 Sum_probs=19.4
Q ss_pred cccccccccchhhccccccccccccCCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
+|++|++.+|=+ ...|.+|++.-
T Consensus 1 ~C~~Cg~~v~Fe-----Nt~C~~Cg~~L 23 (343)
T PF10005_consen 1 SCPNCGQPVFFE-----NTRCLSCGSAL 23 (343)
T ss_pred CCCCCCCcceeC-----CCccccCCccc
Confidence 599999999873 48999999983
No 422
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.45 E-value=2.6e+02 Score=24.70 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=55.7
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEE--eCCC--cchhhchHhHHHHHHHHHHHHHHhcC
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCIT--ATGG--ARMQEGLLSLMQMAKTTAILTKLSKK 194 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~--dsgG--a~i~Eg~~~l~~~~~~~~a~~~l~~~ 194 (286)
-.-++|+++.+----+||+|+......+.+++. +++.-.+-+. ..|+ ..-..|+..+..+......+. .
T Consensus 25 ~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~---~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~----~ 97 (210)
T COG2945 25 TPAAPIALICHPHPLFGGTMNNKVVQTLARALV---KRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQ----A 97 (210)
T ss_pred CCCCceEEecCCCccccCccCCHHHHHHHHHHH---hCCceEEeecccccccccCcccCCcchHHHHHHHHHHHH----h
Confidence 345689999998888999999988887777665 7777777664 2221 122235544444444444433 2
Q ss_pred CCCEEEE--EcCCcchhhhh
Q psy5220 195 KIPFISV--LTNPTMGGVSA 212 (286)
Q Consensus 195 ~vP~Isv--v~g~~~GGg~~ 212 (286)
.-|-..+ +.|.++|+-.+
T Consensus 98 ~hp~s~~~~l~GfSFGa~Ia 117 (210)
T COG2945 98 RHPDSASCWLAGFSFGAYIA 117 (210)
T ss_pred hCCCchhhhhcccchHHHHH
Confidence 4455555 88999998643
No 423
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.39 E-value=30 Score=21.54 Aligned_cols=15 Identities=33% Similarity=0.937 Sum_probs=10.4
Q ss_pred Cchhhhccccccccc
Q psy5220 24 PKGLWIKCLSCKTIL 38 (286)
Q Consensus 24 ~~~~~~~c~~c~~~~ 38 (286)
+.+...+|++|++..
T Consensus 21 ~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 21 PKGRKVRCSKCGHVF 35 (36)
T ss_pred CCCcEEECCCCCCEe
Confidence 345678888888653
No 424
>PRK06852 aldolase; Validated
Probab=24.33 E-value=82 Score=29.45 Aligned_cols=37 Identities=14% Similarity=-0.032 Sum_probs=27.2
Q ss_pred ccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 135 GGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 135 gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
|+..-..+.+.+.++.+.|.++++|+|.+.=.-|-.+
T Consensus 145 Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 145 GSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 3334466788899999999999999998654445444
No 425
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=24.19 E-value=35 Score=24.36 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=17.6
Q ss_pred cccccccccc-hhhc-cccccccccccCCCCCC
Q psy5220 30 KCLSCKTILY-KNDL-KFNQQVCTKCDYHMQIK 60 (286)
Q Consensus 30 ~c~~c~~~~~-~~~l-~~~~~vc~~~~~~~~~~ 60 (286)
-||-|+...- .+.. .....+|.+|+...++.
T Consensus 8 PCPFCG~~~~~v~~~~g~~~v~C~~CgA~~~~~ 40 (64)
T PRK09710 8 PCPFCGCPSVTVKAISGYYRAKCNGCESRTGYG 40 (64)
T ss_pred CCCCCCCceeEEEecCceEEEEcCCCCcCcccc
Confidence 5888886322 2221 22346888888765443
No 426
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=24.14 E-value=1.3e+02 Score=28.23 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=28.7
Q ss_pred EEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 117 GSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 117 g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
=||+|+||.++-.- +.+ +...+-+...-++|.+.++|-|+|+..
T Consensus 154 ikVdGKPv~~Iy~p-----~~~-pd~~~~~~~wr~~a~~~G~~giyii~~ 197 (345)
T PF14307_consen 154 IKVDGKPVFLIYRP-----GDI-PDIKEMIERWREEAKEAGLPGIYIIAV 197 (345)
T ss_pred eeECCEEEEEEECc-----ccc-cCHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 38999999776654 222 333444444456789999996666553
No 427
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=24.10 E-value=1.7e+02 Score=25.22 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=16.0
Q ss_pred HHHHHHHHHHH-HhCCCcEEEEEeC
Q psy5220 143 GERFIQGAQIS-LEQKIPFVCITAT 166 (286)
Q Consensus 143 ~~K~~r~~~~A-~~~~iPlV~l~ds 166 (286)
+-|++++++.- .+.+||+|.|.=-
T Consensus 153 GGkIteaVk~lr~~hgI~VISL~M~ 177 (218)
T COG1707 153 GGKITEAVKELREEHGIPVISLNMF 177 (218)
T ss_pred cchHHHHHHHHHHhcCCeEEEeccC
Confidence 34677777765 4558888887643
No 428
>PLN02621 nicotinamidase
Probab=23.92 E-value=1.8e+02 Score=24.80 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=31.6
Q ss_pred EcCeeEEEEEEcCc--ccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 119 IMNLPLVVAVFEFE--FMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 119 i~G~~v~v~a~d~~--~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
++....++++-|.. |.. ........+.++++.|.+.++|+|+..+..
T Consensus 16 ~~~~~~aLlvID~Q~~f~~--~~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~ 64 (197)
T PLN02621 16 PDPKQAALLVIDMQNYFSS--MAEPILPALLTTIDLCRRASIPVFFTRHSH 64 (197)
T ss_pred CCCCCEEEEEEeChhhhhh--hHHHHHHHHHHHHHHHHHCCCcEEEEeccC
Confidence 34444455554443 222 235566788899999999999999998765
No 429
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=23.87 E-value=2.1e+02 Score=23.29 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 139 GSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 139 ~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
.......+.++++.+.+.++|+|+..+.+
T Consensus 21 ~~~~v~~i~~li~~~r~~~~~Vi~~~~~~ 49 (155)
T cd01014 21 NEAALENIAALIAAARAAGIPVIHVRHID 49 (155)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEEecc
Confidence 45566788899999999999999988754
No 430
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=23.82 E-value=1.6e+02 Score=26.40 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=35.2
Q ss_pred CcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 110 DALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 110 ~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
+.++. |+|+|++|+++..-.....|-. -..+...+.+..++++-.|+.+++.|+
T Consensus 41 ~~~~~--G~i~g~~Vv~~~~~iH~~~Gk~----~a~i~~~~~ll~~~gv~~II~~gsaGs 94 (249)
T TIGR01700 41 GNLVF--GILGGKPVVAMQGRFHMYEGYD----MAKVTFPVRVMKLLGVETLVVTNAAGG 94 (249)
T ss_pred ccEEE--EEECCEEEEEEcCCccccCCcC----HHHccHHHHHHHHcCCCEEEEeccccc
Confidence 34554 5899999999874332233421 222332477778999999999988774
No 431
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=23.77 E-value=17 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.452 Sum_probs=14.6
Q ss_pred hhhcccccccccchhhcccccccc
Q psy5220 27 LWIKCLSCKTILYKNDLKFNQQVC 50 (286)
Q Consensus 27 ~~~~c~~c~~~~~~~~l~~~~~vc 50 (286)
.+..||+|+..+...-+...+.-|
T Consensus 3 ~~~~C~nC~R~v~a~RfA~HLekC 26 (33)
T PF08209_consen 3 PYVECPNCGRPVAASRFAPHLEKC 26 (33)
T ss_dssp -EEE-TTTSSEEEGGGHHHHHHHH
T ss_pred CeEECCCCcCCcchhhhHHHHHHH
Confidence 456899999877765555444444
No 432
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.66 E-value=1.1e+02 Score=24.95 Aligned_cols=28 Identities=7% Similarity=0.348 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 144 ERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 144 ~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
..+.++++.|.+.++|+|.+++.++..+
T Consensus 93 ~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 4566778888888888888888766544
No 433
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=23.50 E-value=90 Score=26.70 Aligned_cols=62 Identities=6% Similarity=0.078 Sum_probs=39.0
Q ss_pred HHHhhcCCCc-eEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCeeEEEEEEc
Q psy5220 64 RLNNFLDKNN-FHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNLPLVVAVFE 130 (286)
Q Consensus 64 ri~~L~D~gs-f~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~~v~v~a~d 130 (286)
.++.|-+.|- +.-++. .+.++.+||| |..++.++-.......+|+ +|.| ++.|..++++-+.
T Consensus 18 l~~~L~~~G~eV~D~G~--~~~e~~dYpd---~a~~va~~V~~g~~d~GIliCGTGiG~siaANKv~GIRAA~~~d~ 89 (171)
T PRK08622 18 VSDYLKSKGHEVIDVGT--YDFTRTHYPI---FGKKVGEAVASGEADLGVCICGTGVGISNAVNKVPGIRSALVRDM 89 (171)
T ss_pred HHHHHHHCCCEEEEcCC--CCCCCCChHH---HHHHHHHHHHcCCCcEEEEEcCCcHHHHHHHhcCCCeEEEEeCCH
Confidence 3344545542 333332 2345667887 8888888777666666765 5554 8899999887654
No 434
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.47 E-value=50 Score=26.85 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=23.8
Q ss_pred hcccccccccchhhcc----------ccccccccccCCCCCCHHHHH
Q psy5220 29 IKCLSCKTILYKNDLK----------FNQQVCTKCDYHMQIKARDRL 65 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~----------~~~~vc~~~~~~~~~~ar~ri 65 (286)
..||.|...+-..... .--..|.+|+.+++++-|..-
T Consensus 40 ~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwterkia 86 (160)
T COG4306 40 TQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTERKIA 86 (160)
T ss_pred hcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHHHHh
Confidence 5788888765432211 113568899999988877654
No 435
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=23.27 E-value=1.8e+02 Score=24.97 Aligned_cols=27 Identities=7% Similarity=-0.061 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 140 SVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 140 ~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
......+.++++.|++.++|||+..+.
T Consensus 26 ~~~v~~i~~l~~~ar~~g~pVi~~~~~ 52 (212)
T PRK11609 26 DSTIDVANRLIDWCQSRGIPVIASQDW 52 (212)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 344566789999999999999999864
No 436
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.21 E-value=2.6e+02 Score=24.76 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=31.2
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
|.|..-++.|-|-.+-+...+|+.++-++-.+.+..+.+-+|.
T Consensus 136 VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDG 178 (223)
T PRK08745 136 VLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG 178 (223)
T ss_pred EEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 5666778888888888888888887777776666665555554
No 437
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.20 E-value=1.2e+02 Score=25.35 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 144 ERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 144 ~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
..+.++++.|.+.++|+|.+++.++..+
T Consensus 115 ~~~i~~~~~ak~~Ga~vI~IT~~~~s~L 142 (177)
T cd05006 115 PNVLKALEAAKERGMKTIALTGRDGGKL 142 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 4567788888888888888888776544
No 438
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.12 E-value=39 Score=30.46 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=21.5
Q ss_pred cccccccccchhhccccccccccccCCCCCCHHHHHHh
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNN 67 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~ 67 (286)
.||.|+.++... .+..+|++ +|++-+.-.-++..
T Consensus 4 ~CP~C~~~l~~~---~~~~~C~~-~h~fd~a~~Gy~~l 37 (272)
T PRK11088 4 QCPLCHQPLTLE---ENSWICPQ-NHQFDCAKEGYVNL 37 (272)
T ss_pred cCCCCCcchhcC---CCEEEcCC-CCCCccccCceEEe
Confidence 699999998553 35689986 66653333333333
No 439
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=23.01 E-value=2.6e+02 Score=22.69 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHhCCCcEEEEEeCCCcchhhchHhHHHHHHHHHHHHHHhcCCCCEEEEEcC
Q psy5220 149 GAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTN 204 (286)
Q Consensus 149 ~~~~A~~~~iPlV~l~dsgGa~i~Eg~~~l~~~~~~~~a~~~l~~~~vP~Isvv~g 204 (286)
..+++...+.|+|++++.....+ ..+..+...+.+.++|++.+|.+
T Consensus 121 ~~dl~~~~~~~vilV~~~~~~~~----------~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 121 TADLIKLLQLPVILVVRVKLGTI----------NHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHHHhCCCEEEEECCCCcHH----------HHHHHHHHHHHHCCCCeEEEEeC
Confidence 34566788999999887633222 22223344466668898888763
No 440
>KOG3984|consensus
Probab=22.78 E-value=3.5e+02 Score=24.66 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=38.8
Q ss_pred CCCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Q psy5220 107 NETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGG 168 (286)
Q Consensus 107 ~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgG 168 (286)
-++.+=---||+++|++|+...--|...-| .......--.|.+++ .++.++++++..|
T Consensus 61 vpghag~lvfG~l~G~pvv~mqgrfh~yeg-y~L~~~tfpvrVm~l---~Gv~~lvvTnaAg 118 (286)
T KOG3984|consen 61 VPGHAGRLVFGTLGGAPVVAMQGRFHSYEG-YPLAKCTFPVRVMQL---LGVRILVVTNAAG 118 (286)
T ss_pred CCCCcccEEEEecCCceEEEEcccccccCC-ccHHHhhhhHHHHHH---cCceEEEEecccc
Confidence 345543344789999999888877776666 444444444566664 4688888887654
No 441
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=22.76 E-value=34 Score=23.10 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=14.4
Q ss_pred cccccccccCCCCCCHHHHH
Q psy5220 46 NQQVCTKCDYHMQIKARDRL 65 (286)
Q Consensus 46 ~~~vc~~~~~~~~~~ar~ri 65 (286)
-+..|++|+|..+.++..|.
T Consensus 27 v~W~C~~Cgh~w~~~v~~R~ 46 (55)
T PF14311_consen 27 VWWKCPKCGHEWKASVNDRT 46 (55)
T ss_pred EEEECCCCCCeeEccHhhhc
Confidence 35678888777777777775
No 442
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.65 E-value=77 Score=27.62 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=35.6
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsg 167 (286)
|.|..-++.|-|-.+-+.+.+|+.++-++..+.+..+.+-+|.|
T Consensus 131 VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGG 174 (201)
T PF00834_consen 131 VLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGG 174 (201)
T ss_dssp EEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESS
T ss_pred EEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 56677789999999999999999999999999888888888863
No 443
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=22.57 E-value=64 Score=30.92 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCCCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Q psy5220 107 NETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGG 168 (286)
Q Consensus 107 ~~~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgG 168 (286)
...|=||||.|||+.+.+. |- --....++|.++++|+|.++.|=|
T Consensus 283 ~daDLVITGEGr~D~Qs~~----------GK-------~pigVA~~Akk~~vPvIaiaGs~~ 327 (378)
T COG1929 283 KDADLVITGEGRIDSQSLH----------GK-------TPIGVAKLAKKYGVPVIAIAGSLG 327 (378)
T ss_pred ccCCEEEeCCCcccccccC----------Cc-------cchHHHHhhhhhCCCEEEEecccc
Confidence 3488899999999977643 21 124566788899999999998744
No 444
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=22.51 E-value=2.4e+02 Score=25.17 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 116 ~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
.|+++|++|+++..-....-|-. . ..++..+++..++++-.|+.+++.|.
T Consensus 45 ~G~~~g~~Vv~~~~gih~~~Gk~---~-~a~~~~~~~l~~~Gv~~II~~GsaGs 94 (248)
T TIGR01697 45 FGRLGGKPVVCMQGRFHYYEGYD---M-ATVTFPVRVMKLLGVEILVVTNAAGG 94 (248)
T ss_pred EEEECCEEEEEEcCCCcccCCCC---H-HHHHHHHHHHHHcCCCEEEEeccccc
Confidence 57899999998873221111211 1 22344477888999999999988774
No 445
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=22.49 E-value=29 Score=28.24 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=25.5
Q ss_pred hhccc--ccccccchhhccccccccccccCCC-CCCHHHHHHhhcCCCc
Q psy5220 28 WIKCL--SCKTILYKNDLKFNQQVCTKCDYHM-QIKARDRLNNFLDKNN 73 (286)
Q Consensus 28 ~~~c~--~c~~~~~~~~l~~~~~vc~~~~~~~-~~~ar~ri~~L~D~gs 73 (286)
+.-|| .|++.+... ..+.+.|++|+... .+..|=+|..-++++|
T Consensus 18 Y~aC~~~~C~kKv~~~--~~~~y~C~~C~~~~~~~~~ry~l~~~i~D~t 64 (146)
T PF08646_consen 18 YPACPNEKCNKKVTEN--GDGSYRCEKCNKTVENPKYRYRLSLKISDGT 64 (146)
T ss_dssp EEE-TSTTTS-B-EEE--TTTEEEETTTTEEESS-EEEEEEEEEEEETT
T ss_pred ECCCCCccCCCEeecC--CCcEEECCCCCCcCCCeeEEEEEEEEEEeCC
Confidence 47899 999876654 23568999999873 4444444544444433
No 446
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.49 E-value=19 Score=26.12 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.7
Q ss_pred cccccccccch
Q psy5220 30 KCLSCKTILYK 40 (286)
Q Consensus 30 ~c~~c~~~~~~ 40 (286)
.||.|+.++-.
T Consensus 3 ~CP~C~~~L~~ 13 (70)
T PF07191_consen 3 TCPKCQQELEW 13 (70)
T ss_dssp B-SSS-SBEEE
T ss_pred cCCCCCCccEE
Confidence 46666655443
No 447
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=22.39 E-value=39 Score=23.89 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=14.4
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
-|.+|+..+. ...||.|+..
T Consensus 5 AC~~C~~i~~-------~~~CP~Cgs~ 24 (61)
T PRK08351 5 ACRHCHYITT-------EDRCPVCGSR 24 (61)
T ss_pred hhhhCCcccC-------CCcCCCCcCC
Confidence 5888887762 2369999885
No 448
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=22.36 E-value=75 Score=28.84 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCcEEEEEeCC
Q psy5220 147 IQGAQISLEQKIPFVCITATG 167 (286)
Q Consensus 147 ~r~~~~A~~~~iPlV~l~dsg 167 (286)
..++..|...+||+|.|+||-
T Consensus 131 ~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 131 HQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred hHHHHHHHHhCCCEEEEecCC
Confidence 478899999999999999975
No 449
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=22.27 E-value=50 Score=22.81 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=5.3
Q ss_pred ccccccccCC
Q psy5220 47 QQVCTKCDYH 56 (286)
Q Consensus 47 ~~vc~~~~~~ 56 (286)
.+.||.||-.
T Consensus 14 ~~~Cp~cGip 23 (55)
T PF13824_consen 14 NFECPDCGIP 23 (55)
T ss_pred CCcCCCCCCc
Confidence 4555555544
No 450
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=22.24 E-value=99 Score=26.44 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=8.6
Q ss_pred CCcEEEEEeCCCcch
Q psy5220 157 KIPFVCITATGGARM 171 (286)
Q Consensus 157 ~iPlV~l~dsgGa~i 171 (286)
+.|+|.++.=||+.|
T Consensus 71 ~r~vv~i~GDG~f~m 85 (196)
T cd02013 71 DRPVVAIAGDGAWGM 85 (196)
T ss_pred CCcEEEEEcchHHhc
Confidence 446666665555554
No 451
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=22.23 E-value=4.5e+02 Score=23.10 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=34.7
Q ss_pred CCcEEEEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 109 TDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 109 ~~~vvtG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
..+..+-.|+++|.+|.++.. | ||...+.-. +.++...++.-+|+.+++.|+
T Consensus 39 ~r~~~~~~G~~~g~~v~v~~~------G-~G~~~aai~--~~eli~~~~~~~iI~~Gt~G~ 90 (232)
T TIGR00107 39 VRGMLGFTGTYKGKKISVMGH------G-MGIPSISIY--VYELIKFYEVKTIIRIGSCGA 90 (232)
T ss_pred ecceEEEEEEECCEEEEEEeC------C-CCHhHHHHH--HHHHHHHcCCCEEEEEecccc
Confidence 335567778999999999873 2 454444422 344445688888888887664
No 452
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.08 E-value=1.3e+02 Score=25.03 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=28.1
Q ss_pred EcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCcch
Q psy5220 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM 171 (286)
Q Consensus 119 i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa~i 171 (286)
++-..++|+.+-. | ....+.++++.|.+.++|+|.+++.++..+
T Consensus 70 ~~~~Dv~I~iS~s----G-----~t~~~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 70 IKKGDLLIAISGS----G-----ETESLVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred CCCCCEEEEEeCC----C-----CcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 4445566655542 2 134556777778888888888888766444
No 453
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.95 E-value=22 Score=32.73 Aligned_cols=30 Identities=23% Similarity=0.646 Sum_probs=13.4
Q ss_pred hcccccccc------cc-hhhcc-ccccccccccCCCC
Q psy5220 29 IKCLSCKTI------LY-KNDLK-FNQQVCTKCDYHMQ 58 (286)
Q Consensus 29 ~~c~~c~~~------~~-~~~l~-~~~~vc~~~~~~~~ 58 (286)
.+||.|++. .+ .++-. ...++|.+|+.+.|
T Consensus 212 ~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK 249 (290)
T PF04216_consen 212 IKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLK 249 (290)
T ss_dssp TS-TTT---SS-EEE--------SEEEEEETTTTEEEE
T ss_pred CCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHH
Confidence 678888761 11 11111 24678888877754
No 454
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=21.94 E-value=52 Score=22.12 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=16.9
Q ss_pred cccccccc-c-ch---hhcc-ccccccccccCCCCC
Q psy5220 30 KCLSCKTI-L-YK---NDLK-FNQQVCTKCDYHMQI 59 (286)
Q Consensus 30 ~c~~c~~~-~-~~---~~l~-~~~~vc~~~~~~~~~ 59 (286)
-||-|+.. . .+ .+.. ..+..|..|++.++.
T Consensus 3 PCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 3 PCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCcceeeEeccCCCCCEEEEECCCCCCCccc
Confidence 48888852 2 11 1111 223479999988764
No 455
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.70 E-value=2.9e+02 Score=24.67 Aligned_cols=43 Identities=7% Similarity=0.008 Sum_probs=32.5
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
|.|..-|+.|-|-.+-+...+|+.++-++-.+.+.-+.+-+|.
T Consensus 144 VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDG 186 (228)
T PRK08091 144 IQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDG 186 (228)
T ss_pred EEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 5666778888888888888888888877777777666666665
No 456
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=21.68 E-value=1.6e+02 Score=22.36 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=32.8
Q ss_pred cCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEE
Q psy5220 120 MNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCIT 164 (286)
Q Consensus 120 ~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ 164 (286)
+|+|.=|+++ ..+.||. ....+-+.|++-++.+.++|+-.++
T Consensus 20 ~g~p~Evf~~-~~~~Gg~--~~~~~ai~rliS~~Lr~G~~~~~ii 61 (95)
T PF12637_consen 20 NGRPFEVFIN-VGKAGGC--SGNLEAIARLISLALRSGVPPEEII 61 (95)
T ss_pred CCcceEEEEe-cCcCCCc--hHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3788777774 5556655 8899999999999999999965544
No 457
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.65 E-value=39 Score=34.33 Aligned_cols=37 Identities=16% Similarity=0.471 Sum_probs=0.0
Q ss_pred cCCCCchhhhcccccccccchhhccccccc------cccccCCCC
Q psy5220 20 KKSIPKGLWIKCLSCKTILYKNDLKFNQQV------CTKCDYHMQ 58 (286)
Q Consensus 20 ~~~~~~~~~~~c~~c~~~~~~~~l~~~~~v------c~~~~~~~~ 58 (286)
.+..+++.| +|+.|++.+...+++....+ || |+....
T Consensus 446 ~r~el~~H~-~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~~ 488 (567)
T PLN03086 446 RVEEAKNHV-HCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVLE 488 (567)
T ss_pred eccccccCc-cCCCCCCccchHHHHHHHHhcCCCccCC-CCCCcc
No 458
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=21.40 E-value=40 Score=29.01 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=16.5
Q ss_pred chhhhcccccccccchh--------hccccccccccccCC
Q psy5220 25 KGLWIKCLSCKTILYKN--------DLKFNQQVCTKCDYH 56 (286)
Q Consensus 25 ~~~~~~c~~c~~~~~~~--------~l~~~~~vc~~~~~~ 56 (286)
+.++.+||+|++...-+ ....+...||+|++.
T Consensus 15 ~~l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~ 54 (188)
T PF08996_consen 15 EPLKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTP 54 (188)
T ss_dssp --EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B
T ss_pred CceEeECCCCCCCccccccccCCccccccCcCcCCCCCCc
Confidence 45899999999743222 223457899999984
No 459
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=21.35 E-value=39 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=15.4
Q ss_pred hcccccccccchhhccccccccccccCC
Q psy5220 29 IKCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 29 ~~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.-|.+|+.... ..+||.|+..
T Consensus 6 ~AC~~C~~i~~-------~~~Cp~Cgs~ 26 (64)
T PRK06393 6 RACKKCKRLTP-------EKTCPVHGDE 26 (64)
T ss_pred hhHhhCCcccC-------CCcCCCCCCC
Confidence 46888987762 2489999885
No 460
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=21.33 E-value=5.2e+02 Score=23.17 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=32.0
Q ss_pred EEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 116 ~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
+|+++|++|++..--+...-|. ....+..-++.....++.-|+++++.|.
T Consensus 45 ~G~l~g~~V~~l~Gr~H~yeg~----~~~~v~~~i~al~~lGv~~ii~tna~Gs 94 (237)
T TIGR01698 45 RVRIGDGPVLVLGGRTHAYEGG----DARAVVHPVRTARATGAETLILTNAAGG 94 (237)
T ss_pred EEEECCEEEEEEcCCCcccCCC----cHHHhHHHHHHHHHcCCCEEEEEccccc
Confidence 6899999999888433322222 1223344455556889998888886663
No 461
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=21.28 E-value=22 Score=35.60 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=27.5
Q ss_pred ccCCCCchhhhcccccccccchh----hccc--cccccccccCCCCCCHHH
Q psy5220 19 VKKSIPKGLWIKCLSCKTILYKN----DLKF--NQQVCTKCDYHMQIKARD 63 (286)
Q Consensus 19 ~~~~~~~~~~~~c~~c~~~~~~~----~l~~--~~~vc~~~~~~~~~~ar~ 63 (286)
++.+.| ...-|++|++..... |.+. -.+.|. |||++..+.+.
T Consensus 168 ~~~~~P--~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~-cG~~~~~~~~~ 215 (510)
T PRK00750 168 QATYSP--FLPICPKCGKVLTTPVISYDAEAGTVTYDCE-CGHEGEVPVTG 215 (510)
T ss_pred CCCeee--eeeeCCCCCccceEEEEEEeCCCCEEEEEcC-CCCEEEEecCC
Confidence 334444 567999999976543 2221 245775 99998887775
No 462
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=21.28 E-value=17 Score=22.84 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=12.2
Q ss_pred hhcccccccccchhhccccccccccccCCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHM 57 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~ 57 (286)
.-||..|+.++-.-+-..-.-+| |+..+
T Consensus 6 ~YkC~~CGniVev~~~g~g~lvC--CGe~M 33 (36)
T PF06397_consen 6 FYKCEHCGNIVEVVHDGGGPLVC--CGEPM 33 (36)
T ss_dssp EEE-TTT--EEEEEE--SS-EEE--TTEE-
T ss_pred EEEccCCCCEEEEEECCCCCEEe--CCccc
Confidence 34899999876443322333455 66553
No 463
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=21.20 E-value=1.2e+02 Score=25.12 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=42.0
Q ss_pred ccCCCCCCHHH-HHHhhcCCCceEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEE--E------EEcCe
Q psy5220 53 CDYHMQIKARD-RLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALI-VIK--G------SIMNL 122 (286)
Q Consensus 53 ~~~~~~~~ar~-ri~~L~D~gsf~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~--g------~i~G~ 122 (286)
|+|.+ +..++ .++.|-+.| +.-. ++++.++.+||| |..++.++-.......|++ +|. | |+.|.
T Consensus 7 sDhaG-~~lK~~l~~~L~~~G-~eV~--D~G~~~~~dYpd---~a~~va~~V~~~~~~~GIliCGTGiG~siaANK~~GI 79 (142)
T PRK08621 7 ADKAG-FELKEVVKDYLEDNK-YEVV--DVTEEGAEDFVD---STLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIKGM 79 (142)
T ss_pred eCcch-HHHHHHHHHHHHHCC-CEEE--ECCCCCCCCcHH---HHHHHHHHHHcCCCceEEEEcCCChhhhhhhhcCCCe
Confidence 44443 33333 345555555 2222 222335567887 8888888877766667766 443 3 78888
Q ss_pred eEEEEEEc
Q psy5220 123 PLVVAVFE 130 (286)
Q Consensus 123 ~v~v~a~d 130 (286)
+.+++-+.
T Consensus 80 RAA~~~d~ 87 (142)
T PRK08621 80 VAAEVSDE 87 (142)
T ss_pred EEEEECCH
Confidence 88877553
No 464
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=21.20 E-value=54 Score=29.21 Aligned_cols=19 Identities=16% Similarity=-0.130 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCcEEEEEe
Q psy5220 147 IQGAQISLEQKIPFVCITA 165 (286)
Q Consensus 147 ~r~~~~A~~~~iPlV~l~d 165 (286)
.++++.|.+.+.|+|.+.-
T Consensus 194 ~~l~~~~~~~~~~~i~iN~ 212 (242)
T PRK00481 194 AGLPYEAREHGAKTVEINL 212 (242)
T ss_pred hHHHHHHHHCCCeEEEECC
Confidence 4566777888999888853
No 465
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=21.07 E-value=1.1e+02 Score=23.04 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=23.1
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEE
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCIT 164 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ 164 (286)
.+++|-|-. +. -+.++..+|.+.++|++++-
T Consensus 32 ~v~iA~Da~-------~~---vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 32 SLIIAEDVE-------VY---LMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred EEEEeCCCC-------HH---HHHHHHHHHHHcCCCEEEEC
Confidence 677787742 22 34688899999999999864
No 466
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=21.01 E-value=33 Score=28.21 Aligned_cols=23 Identities=26% Similarity=0.746 Sum_probs=17.1
Q ss_pred cccccccccchhhccccccccccccCC
Q psy5220 30 KCLSCKTILYKNDLKFNQQVCTKCDYH 56 (286)
Q Consensus 30 ~c~~c~~~~~~~~l~~~~~vc~~~~~~ 56 (286)
.||.|+++.-. . ...+||.|...
T Consensus 5 nC~~CgklF~~-~---~~~iCp~C~~~ 27 (137)
T TIGR03826 5 NCPKCGRLFVK-T---GRDVCPSCYEE 27 (137)
T ss_pred cccccchhhhh-c---CCccCHHHhHH
Confidence 69999985554 3 35789999765
No 467
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=20.95 E-value=1.5e+02 Score=27.90 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=24.4
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGG 168 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~dsgG 168 (286)
++.|+++.-|..|..|. +.+.+..|...++|+|+++.+-|
T Consensus 144 ~~~vv~~~GDGa~~~g~--------~~EaL~tA~~~~LPvi~Vv~NN~ 183 (341)
T TIGR03181 144 DNVAVTYFGDGGTSEGD--------FYEALNFAGVFKAPVVFFVQNNQ 183 (341)
T ss_pred CCEEEEEecCCccccCh--------HHHHHHHHhccCCCEEEEEECCC
Confidence 45666677774443322 23556667778888888776544
No 468
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=20.93 E-value=3.6e+02 Score=22.41 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=24.0
Q ss_pred CeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEE-EeCCCc
Q psy5220 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCI-TATGGA 169 (286)
Q Consensus 121 G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l-~dsgGa 169 (286)
.++|+.+.-|-.|+... ...+..|.+.++|++++ .|.++.
T Consensus 69 ~~~Vv~i~GDG~f~~~g---------~~eL~ta~~~~l~i~vvV~nN~~~ 109 (178)
T cd02008 69 DKKVVAVIGDSTFFHSG---------ILGLINAVYNKANITVVILDNRTT 109 (178)
T ss_pred CCCEEEEecChHHhhcc---------HHHHHHHHHcCCCEEEEEECCcce
Confidence 56788888885553211 13334467889997665 455543
No 469
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=20.89 E-value=1.6e+02 Score=26.51 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=32.9
Q ss_pred EEEEEEcCeeEEEEEEcCcccccCCChHHHHHH--HHHHHHHHhCCCcEEEEEeCCCc
Q psy5220 114 VIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERF--IQGAQISLEQKIPFVCITATGGA 169 (286)
Q Consensus 114 tG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~--~r~~~~A~~~~iPlV~l~dsgGa 169 (286)
.=+|+++|++|+++..- |--..-...|+ ...++...++++-.|+.+++.|+
T Consensus 35 ~~~G~~~g~~Vv~l~~~-----G~gh~~~~~kVn~~a~~~~l~~~Gv~~II~tgsaGs 87 (261)
T PRK08666 35 VKIGTYAGEEVAFLARH-----GEGHSVPPHKINYRANIWALKELGVERILATSAVGS 87 (261)
T ss_pred EEEEEECCEEEEEEeCC-----CCCCccChhhcchHHHHHHHHHCCCCEEEEeccccc
Confidence 34789999999977643 21111123333 23455577999999999987764
No 470
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.83 E-value=42 Score=34.85 Aligned_cols=43 Identities=12% Similarity=-0.036 Sum_probs=26.0
Q ss_pred CCcEEEEEE----EEcCeeEEEEEEcCcccccCCChHHHHHHHHHHH
Q psy5220 109 TDALIVIKG----SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQ 151 (286)
Q Consensus 109 ~~~vvtG~g----~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~ 151 (286)
...++.|.= .+.|.--.|+..|....-+.-+-...++..+.+-
T Consensus 471 ~~~IlVGTqgaepm~~g~~~lV~ildaD~~L~~pDfRA~Er~~qll~ 517 (665)
T PRK14873 471 GPALVVATPGAEPRVEGGYGAALLLDAWALLGRQDLRAAEDTLRRWM 517 (665)
T ss_pred CCCEEEECCCCcccccCCceEEEEEcchhhhcCCCcChHHHHHHHHH
Confidence 456777763 5656555666666665555666666666554433
No 471
>PRK14057 epimerase; Provisional
Probab=20.80 E-value=2.9e+02 Score=25.18 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=26.7
Q ss_pred EEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEeC
Q psy5220 124 LVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITAT 166 (286)
Q Consensus 124 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~ds 166 (286)
|.|..-|+.|-|-++-+.+.+|+.++-++-.+.+..+.+-+|.
T Consensus 158 VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDG 200 (254)
T PRK14057 158 IQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDG 200 (254)
T ss_pred EEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 4455556666666666666666666666665666555555554
No 472
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=20.58 E-value=90 Score=26.13 Aligned_cols=12 Identities=8% Similarity=0.443 Sum_probs=6.2
Q ss_pred CCCCEEEEEcCC
Q psy5220 194 KKIPFISVLTNP 205 (286)
Q Consensus 194 ~~vP~Isvv~g~ 205 (286)
..+|+|.+.-+.
T Consensus 85 ~~~Pvl~i~g~~ 96 (162)
T cd07037 85 SGVPLLVLTADR 96 (162)
T ss_pred cCCCEEEEECCC
Confidence 355666554443
No 473
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=20.53 E-value=69 Score=32.40 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=32.2
Q ss_pred EEEEEEcCeeEEEEEEcCcccccCCChHHHHHHHHHHHHHHhCCCcEEEEEe
Q psy5220 114 VIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITA 165 (286)
Q Consensus 114 tG~g~i~G~~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPlV~l~d 165 (286)
-|.|+-.++||+|++.-. .+.+ .+.=++-.|...++|+|+|+.
T Consensus 63 LGlAKas~rPVavi~TSG--------TA~A-Nl~PAViEA~~srvpLIVLTA 105 (566)
T COG1165 63 LGLAKASKRPVAVICTSG--------TAVA-NLYPAVIEANLSRVPLIVLTA 105 (566)
T ss_pred HhhhhhcCCCEEEEEcCc--------chhh-hccHHHHhhhhcCCceEEEeC
Confidence 578899999999999873 2222 334556668899999999974
No 474
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=20.31 E-value=1.1e+02 Score=26.08 Aligned_cols=63 Identities=6% Similarity=0.044 Sum_probs=40.1
Q ss_pred HHHHhhcCCCc-eEEecCCCCcCCCCCCCCccchHHHHHHHhhcCCCCCcEE-EEEE--------EEcCeeEEEEEEc
Q psy5220 63 DRLNNFLDKNN-FHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALI-VIKG--------SIMNLPLVVAVFE 130 (286)
Q Consensus 63 ~ri~~L~D~gs-f~E~~~~~~~~d~l~f~~~~~y~~~l~~~~~~~~~~~~vv-tG~g--------~i~G~~v~v~a~d 130 (286)
+.++.|-..|- +.-++.. +.++.+||| |..++.++-.......+|+ +|.| ++.|..++++.+.
T Consensus 17 ~l~~~L~~~G~eV~D~G~~--~~~~~dYpd---~a~~va~~V~~g~~~~GIliCGTGiG~siaANKv~GIRAAl~~d~ 89 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTY--DFTRTHYPI---FGKKVGEAVVSGEADLGVCICGTGVGINNAVNKVPGVRSALVRDM 89 (171)
T ss_pred HHHHHHHHCCCEEEEeCCC--CCCCCChHH---HHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEEeCCH
Confidence 33445555552 3333332 345678887 8888888877766666765 5554 7889998887654
No 475
>KOG2846|consensus
Probab=20.27 E-value=42 Score=31.55 Aligned_cols=30 Identities=17% Similarity=0.489 Sum_probs=21.9
Q ss_pred hccccccc--ccchh-hccccccccccccCCCC
Q psy5220 29 IKCLSCKT--ILYKN-DLKFNQQVCTKCDYHMQ 58 (286)
Q Consensus 29 ~~c~~c~~--~~~~~-~l~~~~~vc~~~~~~~~ 58 (286)
.-|++|.. -++++ +.+-.-++||.|++-.+
T Consensus 221 LIC~~C~~HNGla~~ee~~yi~F~C~~Cn~LN~ 253 (328)
T KOG2846|consen 221 LICSQCHHHNGLARKEEYEYITFRCPHCNALNP 253 (328)
T ss_pred hcchhhccccCcCChhhcCceEEECccccccCC
Confidence 46999875 45554 66668899999988643
No 476
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=20.24 E-value=48 Score=31.77 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=5.6
Q ss_pred hcCCCCEEEE
Q psy5220 192 SKKKIPFISV 201 (286)
Q Consensus 192 ~~~~vP~Isv 201 (286)
.+.++++|.+
T Consensus 197 k~~~itvilv 206 (372)
T cd01121 197 KERNIPIFIV 206 (372)
T ss_pred HHcCCeEEEE
Confidence 4456666554
No 477
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=20.08 E-value=71 Score=35.44 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=28.2
Q ss_pred hhcccccccccchhhccccccccccccCCCCCCHHHHHHhhcCC
Q psy5220 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDK 71 (286)
Q Consensus 28 ~~~c~~c~~~~~~~~l~~~~~vc~~~~~~~~~~ar~ri~~L~D~ 71 (286)
-..||+|+-.++...++. -..|.+|-.. .-+..+..+.|.-.
T Consensus 7 ~~~CPnCgg~i~~~rl~~-~~~c~~Clp~-~~~~~~~~~~l~~~ 48 (1171)
T TIGR01054 7 SNLCPNCGGEISSERLEK-GLPCARCLPE-VATPLKVCRALRKE 48 (1171)
T ss_pred cCCCCCCCCccchhHhhc-CCCccccCcc-ccchHHHHHHHhhh
Confidence 357999999999988765 6789999652 22334444444443
No 478
>KOG2593|consensus
Probab=20.04 E-value=68 Score=31.34 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=21.8
Q ss_pred cccccccccccCCCCCCHHHHHHhhcCC--CceEEe
Q psy5220 44 KFNQQVCTKCDYHMQIKARDRLNNFLDK--NNFHEI 77 (286)
Q Consensus 44 ~~~~~vc~~~~~~~~~~ar~ri~~L~D~--gsf~E~ 77 (286)
..+.|+||.|... ++.-+.+ .|+|. |+|.=.
T Consensus 125 ~~~~Y~Cp~C~kk--yt~Lea~-~L~~~~~~~F~C~ 157 (436)
T KOG2593|consen 125 NVAGYVCPNCQKK--YTSLEAL-QLLDNETGEFHCE 157 (436)
T ss_pred ccccccCCccccc--hhhhHHH-HhhcccCceEEEe
Confidence 4468999999886 7777765 56664 666544
Done!