RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5220
(286 letters)
>gnl|CDD|235547 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated.
Length = 292
Score = 466 bits (1201), Expect = e-168
Identities = 154/284 (54%), Positives = 212/284 (74%), Gaps = 1/284 (0%)
Query: 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60
M+W + ++ + K +P+GLW KC SC +LY+ +L+ N VC KC +HM+I
Sbjct: 1 MSWFDKFLPKKIKSSLP-RKAEVPEGLWTKCPSCGQVLYRKELEANLNVCPKCGHHMRIS 59
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+RL+ LD+ +F E+ + P D L F+D+ KY +RLK A+K T DA++ KG+I
Sbjct: 60 ARERLDLLLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIE 119
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+P+V+AV +F FMGGSMGSVVGE+ ++ + ++E+K P V +A+GGARMQEGLLSLMQ
Sbjct: 120 GMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLSLMQ 179
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240
MAKT+A L +LS+ +P+ISVLT+PT GGVSASFA +GDI+IAEP ALIGFAGPRVI+ T
Sbjct: 180 MAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQT 239
Query: 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284
V+EKLP+GFQ +EFLL+ GA+DMI+ RR+LR +A+LLAL K+
Sbjct: 240 VREKLPEGFQRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQ 283
>gnl|CDD|223848 COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid
metabolism].
Length = 294
Score = 418 bits (1076), Expect = e-149
Identities = 150/284 (52%), Positives = 206/284 (72%)
Query: 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60
M+W + K S P+GLW KC SC +LY+ +L+ N +VC KC +HM+I
Sbjct: 1 MSWFSRIKKKIQPNKSDSRKASRPEGLWTKCPSCGEMLYRKELESNLKVCPKCGHHMRIS 60
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+RL LD+ +F E+ + P D L F D+ KY +RL+ A+K T DA++ +G+I
Sbjct: 61 ARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTIN 120
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
LP+V+AV +F FMGGSMGSVVGE+ + + ++E K+P V +A+GGARMQEG+LSLMQ
Sbjct: 121 GLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQ 180
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240
MAKT+A L +LS+ +P+ISVLT+PT GGVSASFA +GDI+IAEPGALIGFAGPRVI+ T
Sbjct: 181 MAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQT 240
Query: 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284
++EKLP+GFQ++EFLL+ G +DMI+ R +LR +A+LLA L +
Sbjct: 241 IREKLPEGFQTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQ 284
>gnl|CDD|129606 TIGR00515, accD, acetyl-CoA carboxylase, carboxyl transferase, beta
subunit. The enzyme acetyl-CoA carboxylase contains a
biotin carboxyl carrier protein or domain, a biotin
carboxylase, and a carboxyl transferase. This model
represents the beta chain of the carboxyl transferase
for cases in which the architecture of the protein is as
in E. coli, in which the carboxyltransferase portion
consists of two non-identical subnits, alpha and beta
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 285
Score = 381 bits (979), Expect = e-134
Identities = 150/284 (52%), Positives = 212/284 (74%), Gaps = 2/284 (0%)
Query: 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60
M+W+ F + +K + K +P+G+W KC C +LY +L+ N +VC KCD+HM++
Sbjct: 1 MSWID--RFKSKKKITSTRKAEVPEGVWTKCPKCGQVLYTKELERNLEVCPKCDHHMRMD 58
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+R+ + LD+ +F E ++ P D L FKD+ KY +R+ A+K T E DA++ KG++
Sbjct: 59 ARERIESLLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLY 118
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+P+VVAVF+F FMGGSMGSVVGE+F++ + +LE P + +A+GGARMQE LLSLMQ
Sbjct: 119 GMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEALLSLMQ 178
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240
MAKT+A L K+S++ +P+ISVLT+PT GGVSASFA +GD+ IAEP ALIGFAGPRVI+ T
Sbjct: 179 MAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQT 238
Query: 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284
V+EKLP+GFQ+SEFLL+ GA+DMI+ R +++ +A+LLA LQ
Sbjct: 239 VREKLPEGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQNL 282
>gnl|CDD|214384 CHL00174, accD, acetyl-CoA carboxylase beta subunit; Reviewed.
Length = 296
Score = 281 bits (720), Expect = 1e-94
Identities = 109/266 (40%), Positives = 167/266 (62%), Gaps = 8/266 (3%)
Query: 20 KKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGE 79
K LW++C +C + YK LK +C +C YH+++ + DR+ +D ++ + E
Sbjct: 30 NTQKYKHLWVQCENCYGLNYKKFLKSKMNICEQCGYHLKMSSSDRIELLIDPGTWNPMDE 89
Query: 80 NILPVDTLNF-KDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSM 138
+++ +D + F D Y +R+ +K T TDA+ G + +P+ + V +F+FMGGSM
Sbjct: 90 DMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGIGQLNGIPVALGVMDFQFMGGSM 149
Query: 139 GSVVGE---RFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAIL-TKLSKK 194
GSVVGE R I+ A + +P + + A+GGARMQEG LSLMQMAK ++ L S K
Sbjct: 150 GSVVGEKITRLIEYAT---NESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNK 206
Query: 195 KIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLPDGFQSSEF 254
K+ +IS+LT+PT GGV+ASF +GDI+IAEP A I FAG RVI+ T+ + +P+G Q++E+
Sbjct: 207 KLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEY 266
Query: 255 LLKKGALDMIIDRRKLRFKIANLLAL 280
L KG D+I+ R L+ ++ L L
Sbjct: 267 LFDKGLFDLIVPRNLLKGVLSELFQL 292
>gnl|CDD|188285 TIGR03133, malonate_beta, malonate decarboxylase, beta subunit.
Members of this protein family are the beta subunit of
malonate decarboxylase. Malonate decarboxylase may be a
soluble enzyme, or linked to membrane subunits and
active as a sodium pump. In the malonate decarboxylase
complex, the beta subunit appears to act as a
malonyl-CoA decarboxylase.
Length = 274
Score = 69.3 bits (170), Expect = 9e-14
Identities = 54/189 (28%), Positives = 78/189 (41%), Gaps = 29/189 (15%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+R LD +F E+ + P D + S L L D ++V +G+I
Sbjct: 8 ARERARGLLDAGSFREL---LGPFDRVI-------SPHLALLGIVPQFDDGVVVGRGTID 57
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGA------QISLEQKIPFVCITATGGARMQEG 174
P+VV E F GGS+G V G + I GA Q V + TGG R+QE
Sbjct: 58 GKPVVVIAQEGRFQGGSVGEVHGAK-IVGALRLAIEDNRKGQPTAVVLLLETGGVRLQEA 116
Query: 175 LLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMG------DIVIAEPGAL 228
L+ +A+ + + +P I V+ GG F MG +I
Sbjct: 117 NAGLIAIAEIMRAILDA-RAAVPVIGVI-----GGRVGCFGGMGIAAGLCSYLIMTEEGR 170
Query: 229 IGFAGPRVI 237
+G +GP VI
Sbjct: 171 LGLSGPEVI 179
>gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain. All of the
members in this family are biotin dependent
carboxylases. The carboxyl transferase domain carries
out the following reaction; transcarboxylation from
biotin to an acceptor molecule. There are two recognised
types of carboxyl transferase. One of them uses acyl-CoA
and the other uses 2-oxoacid as the acceptor molecule of
carbon dioxide. All of the members in this family
utilise acyl-CoA as the acceptor molecule.
Length = 487
Score = 67.7 bits (166), Expect = 8e-13
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+R++ LD +F ++ L F + +K D ++ G+I
Sbjct: 10 ARERIDLLLDPGSF-------GELEDLFF------HRVTEFGRKRL-PGDGVVTGSGAID 55
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+ V +F GGS+G G + + ++++++ P + I +GGAR+QEG+ +L
Sbjct: 56 GRAVEVVAQDFTVWGGSLGPAHGFKITRAMELAIKEGEPLIGINDSGGARIQEGVENLRG 115
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPG-ALIGFAGPRVIK 238
++ S IP IS++T P GG + S A +GD +I G + + GP V+K
Sbjct: 116 YGLIFGANSRAS-GVIPQISLVTGPCAGGGAYSPA-LGDFIIMVKGTSPMFLTGPDVVK 172
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 61.8 bits (151), Expect = 8e-11
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 22/181 (12%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIK--GS 118
AR+R+ LD +F E+G R+ NE V+ G+
Sbjct: 45 ARERVELLLDPGSFLELGALAGH--------------RMGGDA---NELPGDGVVTGIGT 87
Query: 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSL 178
I + V +F GG++G + ++ ++ ++++E +P + + +GGAR+QEG+ SL
Sbjct: 88 INGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSL 147
Query: 179 MQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPG-ALIGFAGPRVI 237
+ + S IP ISV+ P GG + S A + D VI + + GP VI
Sbjct: 148 AGYGRIFYRNARAS-GVIPQISVVMGPCAGGGAYSPA-LTDFVIMVRDQSYMFLTGPPVI 205
Query: 238 K 238
K
Sbjct: 206 K 206
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit.
This model describes methymalonyl-CoA decarboxylase
aplha subunit in archaea and bacteria. Metylmalonyl-CoA
decarboxylase Na+ pump is a representative of a class of
Na+ transport decarboxylases that couples the energy
derived by decarboxylation of carboxylic acid substrates
to drive the extrusion of Na+ ion across the membrane
[Energy metabolism, ATP-proton motive force
interconversion, Energy metabolism, Fermentation,
Transport and binding proteins, Cations and iron
carrying compounds].
Length = 512
Score = 61.4 bits (149), Expect = 1e-10
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+RL D +F EI + + T NF + K + ++ G
Sbjct: 30 KMTARERLALLFDPGSFVEIDQFVKHRCT-NFGMD-----------KKELPAEGVVTGYG 77
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
+I + +F MGGS+G + + ++ ++++ P V + +GGAR+QE + +
Sbjct: 78 TIDGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDA 137
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L T S +P IS + P GG S A I + + + + GP+VI
Sbjct: 138 LKGYGDIFYRNTIAS-GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVI 196
Query: 238 KNTVKEKL 245
K E++
Sbjct: 197 KTVTGEEV 204
Score = 33.7 bits (77), Expect = 0.11
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 187 ILTKLSKKKIPFISVLTNPTMGGVSASFAFMG------DIVIAEPGALIGFAGPRVIKNT 240
+L S+ +P ++++T GG ++ M D V A P A I GP N
Sbjct: 380 VLYAYSEATVPKVTIITRKAYGG---AYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANI 436
Query: 241 V------KEKLPDGFQS-------SEF-----LLKKGALDMIIDRRKLRFKIANLLALLQ 282
+ + K P + EF +G +D +I+ ++ R KI N LA+L+
Sbjct: 437 IFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLE 496
Query: 283 KK 284
K
Sbjct: 497 SK 498
>gnl|CDD|235954 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.
Length = 301
Score = 59.5 bits (145), Expect = 3e-10
Identities = 56/198 (28%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLK---LAKKN--TNETDALIVI 115
AR+R LD +F E+ + ER+ L + D ++V
Sbjct: 17 ARERAAALLDAGSFREL---------------LGPFERVMSPHLPLQGIPPQFDDGVVVG 61
Query: 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQ--------KIPFVCITA-T 166
KG++ P+VVA E FMGGS+G V G + + GA LE V + T
Sbjct: 62 KGTLDGRPVVVAAQEGRFMGGSVGEVHGAK-LAGA---LELAAEDNRNGIPTAVLLLFET 117
Query: 167 GGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMG-------D 219
GG R+QE L +A+ + L + +P I ++ GG F MG
Sbjct: 118 GGVRLQEANAGLAAIAEIMRAIVDL-RAAVPVIGLI-----GGRVGCFGGMGIAAALCSY 171
Query: 220 IVIAEPGALIGFAGPRVI 237
++++E G L G +GP VI
Sbjct: 172 LIVSEEGRL-GLSGPEVI 188
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 33.3 bits (77), Expect = 0.090
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 186 AILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV 236
+L L + P I+ + +GG A DI IA A G ++
Sbjct: 84 ELLRALLRLPKPVIAAVNGAALGG-GLELALACDIRIAAEDAKFGLPEVKL 133
>gnl|CDD|216904 pfam02150, RNA_POL_M_15KD, RNA polymerases M/15 Kd subunit.
Length = 35
Score = 29.0 bits (65), Expect = 0.28
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 31 CLSCKTILYKNDLKFNQQVCTKCDYH 56
C C +L + K + C +C Y
Sbjct: 4 CPKCGNLLLPKEDKEGRNACRQCGYE 29
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 32.0 bits (73), Expect = 0.30
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 188 LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIA 223
L +L P ++ + P GV SFA MGD+++
Sbjct: 96 LRRLRNLPCPIVTAVNGPA-AGVGMSFALMGDLILC 130
>gnl|CDD|234116 TIGR03134, malonate_gamma, malonate decarboxylase, gamma subunit.
Members of this protein family are the gamma subunit of
malonate decarboxylase. Malonate decarboxylase may be a
soluble enzyme, or linked to membrane subunits and
active as a sodium pump. In the malonate decarboxylase
complex, the beta subunit appears to act as a
malonyl-CoA decarboxylase, while the gamma subunit
appears either to mediate subunit interaction or to act
as a co-decarboxylase with the beta subunit. The beta
and gamma subunits exhibit some local sequence
similarity.
Length = 238
Score = 31.4 bits (72), Expect = 0.34
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 156 QKIPFVCITATGGARM--QEGLLSLMQ-MAKTTAILTKLSKKKIPFISVLTNPTMGGVSA 212
K P V + T +E LL + Q +A L P I ++ + G
Sbjct: 65 PKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLVYGRAISGAFL 124
Query: 213 SFAFMGDIVIAEPGALIGF----AGPRVIKNTVKEKLPDGFQSS-------EFLLKKGAL 261
+ D +IA PGA++ + RV K +V E+L +SS E +K G +
Sbjct: 125 AHGLQADRIIALPGAMVHVMDLESMARVTKRSV-EELEALAKSSPVFAPGIENFVKLGGV 183
Query: 262 DMIID 266
++D
Sbjct: 184 HALLD 188
>gnl|CDD|224510 COG1594, RPB9, DNA-directed RNA polymerase, subunit
M/Transcription elongation factor TFIIS
[Transcription].
Length = 113
Score = 30.5 bits (69), Expect = 0.38
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 31 CLSCKTILY-KNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73
C C ++LY K D + + VC KC Y + + + +
Sbjct: 5 CPKCGSLLYPKKDDEGGKLVCRKCGYEEEASNKKVYRYSVKEAV 48
>gnl|CDD|197822 smart00661, RPOL9, RNA polymerase subunit 9.
Length = 52
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 31 CLSCKTILY-KNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNN 73
C C +LY + + + VC KC Y + + L +
Sbjct: 3 CPKCGNMLYPREGKEKRRFVCRKCGYEEPAEQKYVYKEKLKHSK 46
>gnl|CDD|219196 pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). This
family consists of several bacterial malonate
decarboxylase gamma subunit proteins. Malonate
decarboxylase of Klebsiella pneumoniae consists of four
different subunits and catalyzes the conversion of
malonate plus H+ to acetate and CO2. The catalysis
proceeds via acetyl and malonyl thioester residues with
the phosphribosyl-dephospho-CoA prosthetic group of the
acyl carrier protein (ACP) subunit. MdcD and E together
probably function as malonyl-S-ACP decarboxylase.
Length = 234
Score = 29.7 bits (67), Expect = 1.3
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 156 QKIPFVCITATGGARM--QEGLLSLMQ-MAKTTAILTKLSKKKIPFISVLTNPTMGGVSA 212
K P + + T + ++ LL + Q +A P I +L M G
Sbjct: 63 DKRPILALVDTPSQALSRRDELLGINQALAHLAKAYDLARLAGHPVIGLLYGKAMSGAFL 122
Query: 213 SFAFMGDIVIAEPGALIGF----AGPRVIKNTVKEKLPDGFQSS-------EFLLKKGAL 261
+ + +IA PGA++ A RV K +V E L SS + GAL
Sbjct: 123 AHGLQANRLIALPGAMVHVMDLAAMARVTKRSV-EALEALAASSPVFAPGVDNYASMGAL 181
Query: 262 DMIID 266
+ D
Sbjct: 182 WALWD 186
>gnl|CDD|139906 PRK13846, PRK13846, putative glycerol-3-phosphate acyltransferase
PlsX; Provisional.
Length = 316
Score = 29.0 bits (65), Expect = 2.7
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 165 ATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTN-------PTMGGVSASFAFM 217
A G +QE L TA L L++ KIP + PTM G FA +
Sbjct: 87 ALGLDYLQEDKLDAFISTGNTAALVTLARAKIPMFPAVPRPALLVSVPTMRG----FAVI 142
Query: 218 GDI---VIAEPGALIGFA 232
D+ V P ++GFA
Sbjct: 143 LDVGANVSVNPEEMVGFA 160
>gnl|CDD|173959 cd08549, G1PDH_related, Glycerol-1-phosphate_dehydrogenase and
related proteins. Bacterial and archeal
glycerol-1-phosphate dehydrogenase-like oxidoreductases.
The proteins have similarity with glycerol-1-phosphate
dehydrogenase (G1PDH). G1PDH plays a role in the
synthesis of phosphoglycerolipids in gram-positive
bacterial species. It catalyzes the reversibly reduction
of dihydroxyacetone phosphate (DHAP) to
glycerol-1-phosphate (G1P) in a NADH-dependent manner.
Its activity requires Ni++ ion. It also contains
archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH)
that plays an important role in the formation of the
enantiomeric configuration of the glycerophosphate
backbone (sn-glycerol-1-phosphate) of archaeal ether
lipids.
Length = 332
Score = 28.7 bits (64), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 193 KKKIPFISVLTNPTMGGVSASFA 215
K PFISV T P+M G ++S A
Sbjct: 102 KVGKPFISVPTAPSMDGYASSVA 124
>gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class)
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 317
Score = 28.1 bits (63), Expect = 5.0
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 33/172 (19%)
Query: 81 ILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGS 140
+ P + + L +K ++ A+I ++G+I+ GG +
Sbjct: 32 LAPTLKAVGLLAKRLGKLEALLRKRGSKVIAVIHVEGAIVAG------------GGPLRF 79
Query: 141 VVGERFIQG-AQISLEQKIPFVC--ITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIP 197
+ G+ + + + V I + GG+ + +A+ L +L KK P
Sbjct: 80 IGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASE-----LIARA---LKRLRAKK-P 130
Query: 198 FISVLTNPTMGGVSASFAFM----GDIVIAEPGALIGFAGPRVIKNTVKEKL 245
+ +GG +AS + D ++A+P ++ G G +E L
Sbjct: 131 VVVS-----VGGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELL 177
>gnl|CDD|223658 COG0585, COG0585, Uncharacterized conserved protein [Function
unknown].
Length = 406
Score = 28.1 bits (63), Expect = 6.2
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 214 FAFMGDIVIAEPGALIGFAGP---RVIKNTVKEKLPDGFQSSEFLLKKGALDMIIDRRKL 270
DI PG + + K ++E +G F +K L + RR L
Sbjct: 304 EEGELDITAPLPGYDVPPTSGEAGEIEKEILEE---EGLSLELFKREKMPLSLKGSRRAL 360
Query: 271 RFKIANL 277
K L
Sbjct: 361 LLKPQGL 367
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,379,782
Number of extensions: 1380455
Number of successful extensions: 1237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 34
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)