RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5220
(286 letters)
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 484 bits (1248), Expect = e-175
Identities = 154/284 (54%), Positives = 213/284 (75%), Gaps = 4/284 (1%)
Query: 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60
M+W++ N+ K SIP+G+W KC SC +LY+ +L+ N +VC KCD+HM++
Sbjct: 1 MSWIERIK-SNITPTR---KASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMT 56
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+RL++ LD+ + E+G + P D L F+D+ KY +RL A+K T E DAL+V+KG++
Sbjct: 57 ARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLY 116
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+P+V A FEF FMGGSMGSVVG RF++ + +LE P +C +A+GGARMQE L+SLMQ
Sbjct: 117 GMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQ 176
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240
MAKT+A L K+ ++ +P+ISVLT+PTMGGVSASFA +GD+ IAEP ALIGFAGPRVI+ T
Sbjct: 177 MAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQT 236
Query: 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284
V+EKLP GFQ SEFL++KGA+DMI+ R ++R K+A++LA L
Sbjct: 237 VREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNL 280
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 285
Score = 469 bits (1209), Expect = e-169
Identities = 107/285 (37%), Positives = 166/285 (58%), Gaps = 3/285 (1%)
Query: 1 MNWLKNYSFPNLQKNNAFVKKSIPKGLWIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIK 60
++ +P G+ KC CK I+Y +L N VC CD+H+ +
Sbjct: 3 KDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALT 62
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
A R+ D+ +F E + + + L+F Y E+++ ++ T +A++ +
Sbjct: 63 AYKRIEAISDEGSFTEFDKGMTSANPLDFPS---YLEKIEKDQQKTGLKEAVVTGTAQLD 119
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+ VAV + F GSMGSV+GE+ + E ++PF+ +A+GGARMQEG++SLMQ
Sbjct: 120 GMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQ 179
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240
M KT+ L + S + +IS LT+PT GGVSASFA +GDI ++EP ALIGFAG RVI+ T
Sbjct: 180 MGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQT 239
Query: 241 VKEKLPDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKKS 285
+ EKLPD FQ++EFLL+ G LD ++ R +R ++ +L + Q+ +
Sbjct: 240 INEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVT 284
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 80.7 bits (200), Expect = 2e-17
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+RLNN LD ++F E+G T F + K D ++ +G+I+
Sbjct: 46 ARERLNNLLDPHSFDEVGAFRKH-RTTLFGMD-----------KAVVPADGVVTGRGTIL 93
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
P+ A +F MGGS G + ++ + +L PF+ +GGAR+QEG+ SL
Sbjct: 94 GRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSG 153
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240
K KLS +P I+++ P GG S S A D +I A + GP+VIK+
Sbjct: 154 YGKMFFANVKLS-GVVPQIAIIAGPCAGGASYSPALT-DFIIMTKKAHMFITGPQVIKSV 211
Query: 241 VKEK 244
E
Sbjct: 212 TGED 215
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 78.8 bits (195), Expect = 9e-17
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+R++ LD+ +F E+ E T D + D ++ G++
Sbjct: 48 ARERIDLLLDEGSFVELDEFARHRSTNFGLDANRP------------YGDGVVTGYGTVD 95
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ SL
Sbjct: 96 GRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGA 155
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPG-ALIGFAGPRVIKN 239
+ T S IP IS++ P GG S A D + + + GP VIK
Sbjct: 156 YGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAIT-DFTVMVDQTSHMFITGPDVIK- 212
Query: 240 TV 241
TV
Sbjct: 213 TV 214
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 77.6 bits (192), Expect = 2e-16
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+R+ LD+++F E+ T + D ++ G+I
Sbjct: 59 ARERIYALLDEDSFVELDALAKHRSTNFNLG------------EKRPLGDGVVTGYGTID 106
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+ + + GGS+G V GE+ ++ +++++ P + I GAR+QEG++SL
Sbjct: 107 GRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGL 166
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPG-ALIGFAGPRVIKN 239
++ S IP IS++ GG S A D VI + + GP VIK
Sbjct: 167 YSRIFRNNILAS-GVIPQISLIMGAAAGGHVYSPALT-DFVIMVDQTSQMFITGPDVIK- 223
Query: 240 TV 241
TV
Sbjct: 224 TV 225
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 75.7 bits (187), Expect = 1e-15
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
A +RL LD F EI + + +T F K D +I G I
Sbjct: 49 AWERLELLLDPGTFVEIDKFVEHRNT-YFG-----------LDKVKLPRDGVITGVGEIN 96
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+ V +F MGGS+G + ++ ++ ++L+ IP + I +GGAR+QEG+ +L
Sbjct: 97 GRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDALAG 156
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGF-AGPRVIKN 239
+ T S +P I+V+ P GG S A D ++ F GP VIK
Sbjct: 157 YGEIFLRNTLAS-GVVPQITVIAGPCAGGAVYSPALT-DFIVMVDQTARMFITGPNVIKA 214
Query: 240 TVKEK 244
E+
Sbjct: 215 VTGEE 219
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 73.7 bits (182), Expect = 5e-15
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 15/185 (8%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+R++ LD+ +F E + T +F + D ++ G+I
Sbjct: 56 ARERVDLLLDEGSFEEFDMFVTHRCT-DFN-----------MQDQKPAGDGVVTGWGTIN 103
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+ V +F +GGS+ ++ + ++++ P + I +GGAR+QEG+ SL
Sbjct: 104 GRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVDSLAG 163
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGF-AGPRVIKN 239
+ S +P IS++ P GG S A D + + F GP V+K
Sbjct: 164 YGEVFQRNIMAS-GVVPQISMIMGPCAGGAVYSPAMT-DFIFMVKDSSYMFVTGPDVVKT 221
Query: 240 TVKEK 244
E+
Sbjct: 222 VTNEQ 226
Score = 33.3 bits (77), Expect = 0.080
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 197 PFISVLTNPTMGG---VSASFAFMGDIVIAEPGALIGFAGP---------RVIKN--TVK 242
P ++V+T GG V +S D A P A + G + + +
Sbjct: 413 PMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATEIIHRGDLGDPEKIA 472
Query: 243 EKL---PDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284
+ + F + ++G +D +I R R ++A A L+ K
Sbjct: 473 QHTADYEERFANPFVASERGFVDEVIQPRSTRKRVARAFASLRNK 517
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 73.0 bits (180), Expect = 1e-14
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 16/186 (8%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+RL D F+EI T D K D ++ G +
Sbjct: 42 ARERLALLFDDGKFNEIMTFATTRATEFGLD------------KQRFYGDGVVTGWGKVD 89
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
+ +F +GGS+G + ++ +++L+ P V I +GGAR+QEG LSL
Sbjct: 90 GRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQEGALSLEG 149
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIA--EPGALIGFAGPRVIK 238
+ S IP I+++ P GG S A D +I + GP + K
Sbjct: 150 YGAVFKMNVMAS-GVIPQITIMAGPAAGGAVYSPALT-DFIIMIKGDAYYMFVTGPEITK 207
Query: 239 NTVKEK 244
+ E+
Sbjct: 208 VVLGEE 213
Score = 28.7 bits (65), Expect = 2.4
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 197 PFISVLTNPTMGG---VSASFAFMGDIVIAEPGALIGFAGP---------RVIKN----- 239
P I+V+ + GG + + D+V A P A I GP + I+
Sbjct: 400 PKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQQASNPD 459
Query: 240 -TVKEKL---PDGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKK 284
+K+++ F + + +KG +D +I+ + R I L +L+ K
Sbjct: 460 DVLKQRIAEYRKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKTK 508
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 55.6 bits (134), Expect = 7e-09
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 34/179 (18%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
R+ + + E I + + + D + +K
Sbjct: 156 GIPRVYLAANSGARIGLAEEIKHMFQVAWVDPEDPHKGIKY------------------- 196
Query: 121 NLPLVVAVFEFEF-MGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLM 179
+ + ++ S+ SV + E IT G G+ +L
Sbjct: 197 -----LYLTPQDYTRISSLNSVHCKHVE-------EDGESRYVITDIIGKEEGLGVENLR 244
Query: 180 QMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIK 238
A T +I IS+++ +G + +G VI + I G +
Sbjct: 245 GSGM-IAGETSQDYDEIVTISMVSCRALGIGAYLVR-LGQRVIQVENSHIILTGATALN 301
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 55.1 bits (133), Expect = 8e-09
Identities = 25/204 (12%), Positives = 60/204 (29%), Gaps = 27/204 (13%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNE--TDALIVIKGS 118
A R+ ++ ++ + L N+ + A++ G
Sbjct: 63 ALQRIEKLVEPGSWRPLNT---------------------LFNPQGNKNGSVAIVKGLGR 101
Query: 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSL 178
+ VV + + + G+ E ++ + + +P V + G + E
Sbjct: 102 VNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVY 161
Query: 179 MQMAKTTAI---LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR 235
+L++ IP I + G + ++IA A + G
Sbjct: 162 PNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAG-GGYHSISPTVIIAHEKANMAVGGAG 220
Query: 236 VIKNTVKEKLPDGFQSSEFLLKKG 259
++ + D ++E
Sbjct: 221 IMGGMNPKGHVDLEYANEIADMVD 244
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 52.8 bits (127), Expect = 4e-08
Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNE--TDALIVIKGS 118
A R+N +D + + L N+ T ++ G
Sbjct: 64 AMQRINALIDPGTWCPLNS---------------------LFNPENNKFGTTNIVNGLGR 102
Query: 119 IMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGAR--MQEGLL 176
+ + + + + M G+ E I+ + + +P + + G Q+ +
Sbjct: 103 VDGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVY 162
Query: 177 -SLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPR 235
+ ++L++ IP I + G + I+IA A + G
Sbjct: 163 PNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAG-GGYHSISPTILIAHQDANMAVGGAG 221
Query: 236 VIK 238
++
Sbjct: 222 ILS 224
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 44.5 bits (105), Expect = 3e-05
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 134 MGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSK 193
G + + ++ I G+ G+ L A T +
Sbjct: 186 EGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGL-IAGATSRAY 244
Query: 194 KKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTV-KEKLPDGFQ 250
I I+++T ++G + +G I G I G I + +E Q
Sbjct: 245 HDIFTITLVTCRSVGIGAYLVR-LGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQ 301
Score = 37.2 bits (86), Expect = 0.005
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGAR--MQEGLLSLMQ 180
VV + F GS G E F + + + ++ IP + + A GAR M E ++ L Q
Sbjct: 106 QFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQ 165
Query: 181 MA 182
+A
Sbjct: 166 VA 167
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 43.0 bits (102), Expect = 6e-05
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 37/190 (19%)
Query: 61 ARDRLNNFLDKN-NFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDA----LIVI 115
R+R+N LD F E+ LA + ++
Sbjct: 76 VRERINRLLDPGSPFLELS---------------------ALAAHEVYGEEVAAAGIVAG 114
Query: 116 KGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGAR--MQ- 172
G + + ++ + GG+ + ++ ++ I+LE ++P + + +GGA Q
Sbjct: 115 IGRVEGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQD 174
Query: 173 EGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAF---MGD-IVIAEPGAL 228
E + +S + IP I+V+ MG +A A+ M D V+ A
Sbjct: 175 EVFPDREHFGRIFFNQANMSARGIPQIAVV----MGSCTAGGAYVPAMSDETVMVREQAT 230
Query: 229 IGFAGPRVIK 238
I AGP ++K
Sbjct: 231 IFLAGPPLVK 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 51/183 (27%)
Query: 66 NNFLDKNNFHEIGENILPVDT---LNFKDNIK--YSERLKLAKKNTNETD-ALI--VIKG 117
N +L+ N+ H + +L + + K+ IK + R+ + +++ AL V +G
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQIS-LE--QKI-----PFV--CITATG 167
+ +VA+F GG QG E + + V I
Sbjct: 153 NAQ----LVAIF-----GG-----------QGNTDDYFEELRDLYQTYHVLVGDLIK--- 189
Query: 168 GARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGA 227
E L L +TT K+ + + + L NP+ + ++ I I+ P
Sbjct: 190 --FSAETLSEL---IRTTLDAEKVFTQGLNILEWLENPSN---TPDKDYLLSIPISCP-- 239
Query: 228 LIG 230
LIG
Sbjct: 240 LIG 242
Score = 37.3 bits (86), Expect = 0.005
Identities = 46/267 (17%), Positives = 73/267 (27%), Gaps = 100/267 (37%)
Query: 38 LYKNDLKFNQQVCTKCDYHMQIKARDRLN-NFLD--KNN-----FH-------EIGENIL 82
LYK Q V + D H +D + LD NN H I EN
Sbjct: 1635 LYKTSKAA-QDVWNRADNHF----KDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN-- 1687
Query: 83 PVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGS--IMNL-----P---LV-VAVFE- 130
+ F+ + + + K NE + +++ P L+ A FE
Sbjct: 1688 -YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 131 ------------F------EF-----MGGSMG-----SVVGER--FIQGAQISLEQKIPF 160
F E+ + M VV R +Q A E
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 161 VCITATGGARM-----QEGLLSL---------------------MQ---------MAKTT 185
+ A R+ QE L + Q + T
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 186 AILTKLSKKKIPFISVLTNPTMGGVSA 212
+L + +KI I + + ++ V
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 31.2 bits (70), Expect = 0.50
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 45/160 (28%)
Query: 138 MGSVVG------ERFIQGAQISL--EQKI-------P--FVCITATGGARMQEGLLSLMQ 180
M S+ + ++ L +++ V +G + GL ++
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV---SGPPQSLYGLNLTLR 394
Query: 181 MAKTTAILTKLSKKKIPF------ISVLTNPTMGGVSASF--AFMGDIVIAEPGALIGFA 232
AK + L + +IPF S P V++ F + A
Sbjct: 395 KAKAPS---GLDQSRIPFSERKLKFSNRFLP----VASPFHSHLLVP---ASDLINKDLV 444
Query: 233 GPRVIKNTVKEKLP-----DG--FQSSEFLLKKGALDMII 265
V N ++P DG + + + +D II
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4
type zinc finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 157
Score = 31.1 bits (70), Expect = 0.18
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 28 WIKCLSCK---TILYKND-LKFNQQVCTKCDYHMQIKARDRLNNFLDKN 72
++ C C+ T L+ N + C C Y + +L F+ KN
Sbjct: 103 FVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKN 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.28
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 24/105 (22%)
Query: 57 MQIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIK 116
Q + +D L+ F D F VD + KD ++ + L+K+ E D +I+ K
Sbjct: 14 HQYQYKDILSVFEDA--F---------VDNFDCKD-VQDMPKSILSKE---EIDHIIMSK 58
Query: 117 GSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFV 161
++ + S + ++F++ L F+
Sbjct: 59 DAVSGTLRLFWTLL------SKQEEMVQKFVEEV---LRINYKFL 94
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR
{Homo sapiens}
Length = 170
Score = 30.5 bits (68), Expect = 0.36
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 28 WIKCLSCK---TILYKND-LKFNQQVCTKCDYHMQIKARDRLNNFLDKN 72
++ C C+ T L+ N + C C Y + +L F+ KN
Sbjct: 96 FVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKN 144
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 29.6 bits (67), Expect = 1.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 209 GVSASFAFMGDIVIAEPGALIGFA 232
G+ + A M D+ A GA
Sbjct: 143 GIGLTQALMCDVRFAAAGAKFAAV 166
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 28.7 bits (65), Expect = 1.8
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 161 VCITATGGA--------RMQEGLLSLMQMAKT-TAILTKLSKKKIPFISVLTNPTMGGVS 211
+ +T G A + + ++ LS + P + + G
Sbjct: 48 LLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGA-G 106
Query: 212 ASFAFMGDIVIAEPGALIGFA 232
S A GD+ +A GA A
Sbjct: 107 MSLALWGDLRLAAVGASFTTA 127
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 2.0
Identities = 7/27 (25%), Positives = 8/27 (29%), Gaps = 2/27 (7%)
Query: 29 IKCLSCKTILYK--NDLKFNQQVCTKC 53
+ C CK K VC C
Sbjct: 22 LTCPECKVYPPKIVERFSEGDVVCALC 48
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 28.3 bits (64), Expect = 2.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 209 GVSASFAFMGDIVIAEPGALIGFA 232
G A A D +A+P F
Sbjct: 126 GAGAVLALAADFRVADPSTRFAFL 149
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 27.8 bits (62), Expect = 4.0
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 209 GVSASFAFMGDIVIAEPGALIGFAGPRV 236
A D VIA A IG+ RV
Sbjct: 170 AGGTDIALHADQVIAAADAKIGYPPMRV 197
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.6
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 10/34 (29%)
Query: 20 KKSIPKGLWIKCLSCKTILYKND----LKFNQQV 49
K+++ K L LY +D L +
Sbjct: 19 KQALKK------LQASLKLYADDSAPALAIKATM 46
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 26.8 bits (60), Expect = 7.5
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 209 GVSASFAFMGDIVIAEPGALIGFA 232
G+S + + D V A A
Sbjct: 134 GISVTLLGLFDAVYASDRATFHTP 157
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 26.8 bits (60), Expect = 7.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 187 ILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFA 232
++ ++ P I+ + +G S A D+V+A P + A
Sbjct: 84 VVRAITSLPKPVIAGVHGAAVGF-GCSLALACDLVVAAPASYFQLA 128
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 27.0 bits (60), Expect = 8.7
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 216 FMG-DIV----IAEPGALIGFAGPRVIKNTVKEKLPDGFQSSEFLLKKGA 260
F+G D + I P L+ + + + + LP ++E+L +G
Sbjct: 294 FIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGK 343
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,185,367
Number of extensions: 250574
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 35
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)