RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5220
(286 letters)
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 263 bits (673), Expect = 7e-89
Identities = 146/257 (56%), Positives = 199/257 (77%)
Query: 28 WIKCLSCKTILYKNDLKFNQQVCTKCDYHMQIKARDRLNNFLDKNNFHEIGENILPVDTL 87
W KC SC +LY+ +L+ N +VC KCD+HM++ AR+RL++ LD+ + E+G + P D L
Sbjct: 2 WTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVL 61
Query: 88 NFKDNIKYSERLKLAKKNTNETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFI 147
F+D+ KY +RL A+K T E DAL+V+KG++ +P+V A FEF FMGGSMGSVVG RF+
Sbjct: 62 KFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFV 121
Query: 148 QGAQISLEQKIPFVCITATGGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTM 207
+ + +LE P +C +A+GGARMQE L+SLMQMAKT+A L K+ ++ +P+ISVLT+PTM
Sbjct: 122 RAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTM 181
Query: 208 GGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTVKEKLPDGFQSSEFLLKKGALDMIIDR 267
GGVSASFA +GD+ IAEP ALIGFAGPRVI+ TV+EKLP GFQ SEFL++KGA+DMI+ R
Sbjct: 182 GGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRR 241
Query: 268 RKLRFKIANLLALLQKK 284
++R K+A++LA L
Sbjct: 242 PEMRLKLASILAKLMNL 258
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 129 bits (325), Expect = 9e-37
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 16/227 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ A +RL LD F EI + + +T K D +I G
Sbjct: 34 KLTAWERLELLLDPGTFVEIDKFVEHRNTYFG------------LDKVKLPRDGVITGVG 81
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
I + V +F MGGS+G + ++ ++ ++L+ IP + I +GGAR+QEG+ +
Sbjct: 82 EINGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDA 141
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S +P I+V+ P GG S A IV+ + A + GP VI
Sbjct: 142 LAGYGEIFLRNTLAS-GVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVI 200
Query: 238 KNTVKEKLPDGFQSSEFL--LKKGALDMIIDRRKLRFKIA-NLLALL 281
K E++ + K G + D + + LL+ L
Sbjct: 201 KAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYL 247
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 119 bits (299), Expect = 5e-33
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 20/229 (8%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R++ LD+ +F E+ E T D + D ++ G
Sbjct: 36 KLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRP------------YGDGVVTGYG 83
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
++ P+ V +F GG++G V G++ ++ +L+ P V I +GGAR+QEG+ S
Sbjct: 84 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 143
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L + T S IP IS++ P GG S A V+ + + + GP VI
Sbjct: 144 LGAYGEIFRRNTHASGV-IPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 202
Query: 238 KNTVKEKLPDGFQSSEFLLKKGALDMIID-----RRKLRFKIANLLALL 281
K E + GF+ + + + + LL+ L
Sbjct: 203 KTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL 249
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 116 bits (292), Expect = 7e-32
Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 16/227 (7%)
Query: 58 QIKARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKG 117
++ AR+R+ LD+++F E+ K+ + D ++ G
Sbjct: 37 KLTARERIYALLDEDSFVEL------------DALAKHRSTNFNLGEKRPLGDGVVTGYG 84
Query: 118 SIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLS 177
+I + + + GGS+G V GE+ ++ +++++ P + I GAR+QEG++S
Sbjct: 85 TIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVS 144
Query: 178 LMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
L ++ S IP IS++ GG S A +++ + + + GP VI
Sbjct: 145 LGLYSRIFRNNILASGV-IPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVI 203
Query: 238 KNTVKEKL--PDGFQSSEFLLKKGALDMIIDRRK-LRFKIANLLALL 281
K E++ + + + K G + + LL+ L
Sbjct: 204 KTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYL 250
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 253
Score = 111 bits (279), Expect = 4e-30
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
AR+RLNN LD ++F E+G TL D D ++ +G+I+
Sbjct: 40 ARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVV------------PADGVVTGRGTIL 87
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
P+ A +F MGGS G + ++ + +L PF+ +GGAR+QEG+ SL
Sbjct: 88 GRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSG 147
Query: 181 MAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNT 240
K KLS +P I+++ P GG S S A + D +I A + GP+VIK+
Sbjct: 148 YGKMFFANVKLS-GVVPQIAIIAGPCAGGASYSPA-LTDFIIMTKKAHMFITGPQVIKSV 205
Query: 241 VKEKLP--DGFQSSEFLLKKGALDMIIDRRKLRFKIA-NLLALLQKKS 285
E + + + + G + + + IA LL+ L + +
Sbjct: 206 TGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNN 253
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 71.5 bits (174), Expect = 4e-15
Identities = 26/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)
Query: 61 ARDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIM 120
A R+ ++ ++ + L + N N + A++ G +
Sbjct: 62 ALQRIEKLVEPGSWRPLNT-------------------LFNPQGNKNGSVAIVKGLGRVN 102
Query: 121 NLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQ 180
VV + + + G+ E ++ + + +P V + G + E
Sbjct: 103 GKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPN 162
Query: 181 MAKTTAI---LTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVI 237
+L++ IP I + G + ++IA A + G ++
Sbjct: 163 RRGGGTPFFRNAELNQLGIPVIVGIYGTNPAG-GGYHSISPTVIIAHEKANMAVGGAGIM 221
Query: 238 KNTVKEKLPDGFQSSE 253
+ D ++E
Sbjct: 222 GGMNPKGHVDLEYANE 237
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 271
Score = 69.4 bits (169), Expect = 2e-14
Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 25/200 (12%)
Query: 110 DALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGA 169
++V G I P+ + + G + E+ + + IP V + G
Sbjct: 58 QNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGF 117
Query: 170 RMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMG---DIVIAEPG 226
+ + +L + +P I+V+T GG D+ +A P
Sbjct: 118 LPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT 177
Query: 227 ALIGFAGPR-----VIKNTVKEKLPDGFQSSEFLLKK-----------------GALDMI 264
A I G V + + E +G + L+ G +D +
Sbjct: 178 AQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAV 237
Query: 265 IDRRKLRFKIANLLALLQKK 284
I R I L LL++K
Sbjct: 238 IPPSHTRGYIGTALRLLERK 257
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 56.7 bits (136), Expect = 5e-10
Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 21/199 (10%)
Query: 107 NETDALIVIKGSIMNLPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITAT 166
+++ I + + + + G + ++ + + IP + T
Sbjct: 52 YFAKNIVIGFARIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDT 111
Query: 167 GGARMQEGLLSLMQMAKTTAILTKLSKKKIPFISVLTNPTMGG---VSASFAFMGDIVIA 223
G + +L S+ +P I+V+ GG S D+V+A
Sbjct: 112 PGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLA 171
Query: 224 EPGALIGFAGPRVIKNTVKEKLPDGFQSSEFLLKK------------------GALDMII 265
P A I GP N + ++ + + E +K G +DM+I
Sbjct: 172 WPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVI 231
Query: 266 DRRKLRFKIANLLALLQKK 284
D R+ R I L + + K
Sbjct: 232 DPRETRKYIMRALEVCETK 250
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 52.7 bits (126), Expect = 1e-08
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 123 PLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARM--QEGLLSLMQ 180
VV + F GS G E F + + + ++ IP + + A GAR+ E ++ L Q
Sbjct: 100 QFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQ 159
Query: 181 MAKTT 185
+A
Sbjct: 160 VAWND 164
Score = 51.9 bits (124), Expect = 2e-08
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 12/148 (8%)
Query: 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQM 181
L L E SV+ ER + + I G+ G+ L
Sbjct: 175 LYLTSEGMETLKKFDKENSVLTERTVINGEE-------RFVIKTIIGSEDGLGVECLRGS 227
Query: 182 AKTTAILTKLSKKKIPFISVLTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRVIKNTV 241
++ I I+++T ++G + +G I G I G I +
Sbjct: 228 GLIAGATSRAYHD-IFTITLVTCRSVGIGAYLVR-LGQRAIQVEGQPIILTGAPAINKML 285
Query: 242 KEKL---PDGFQSSEFLLKKGALDMIID 266
++ ++ + G +
Sbjct: 286 GREVYTSNLQLGGTQIMYNNGVSHLTAV 313
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 35.5 bits (81), Expect = 0.005
Identities = 30/252 (11%), Positives = 64/252 (25%), Gaps = 42/252 (16%)
Query: 62 RDRLNNFLDKNNFHEIGENILPVDTLNFKDNIKYSERLKLAKKNTNETDALIVIKGSIMN 121
+ + D + HE + + + LAK N + ++G +MN
Sbjct: 36 YNVIARLFDNSELHEYKK--------GYGPEMVTG----LAKVNGLLVGVVANVQGLLMN 83
Query: 122 LPLVVAVFEFEFMGGSMGSVVGERFIQGAQISLEQKIPFVCITATGGARMQEGLLSLMQM 181
P A +GG + + + + ++P V I T G + +
Sbjct: 84 YPEYKA-AGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELL 142
Query: 182 AKTTAILTKLSKKKIPFISV-----LTNPTMGGVSASFAFMGDIVIAEPGALIGFAGPRV 236
+++ + IP + I I
Sbjct: 143 GLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGET 202
Query: 237 IKNTVKEKLPDGFQSSEFLLKK------------------------GALDMIIDRRKLRF 272
+ + + + L+ G +D I+D K+R
Sbjct: 203 AATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRG 262
Query: 273 KIANLLALLQKK 284
+ +
Sbjct: 263 YVEAFTEAAYQN 274
>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 27.5 bits (59), Expect = 1.3
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 31 CLSCKTILYKNDLKFNQQVCTKCD 54
L C + + Q C KC
Sbjct: 126 TLVCPPNNQEVTAEDGTQRCEKCS 149
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 120
Score = 26.0 bits (56), Expect = 2.7
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 13/37 (35%)
Query: 31 CLSCKTILYKNDL-------------KFNQQVCTKCD 54
C++C L + + + C C
Sbjct: 19 CVNCSHFLRGQECVEECRVWKGLPREYVSDKRCLPCH 55
>d1qk1a1 a.83.1.1 (A:1-102) Creatine kinase, N-domain {Human (Homo
sapiens), mitochondria [TaxId: 9606]}
Length = 102
Score = 24.8 bits (54), Expect = 7.2
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 9 FPNLQKNNAFVKKSIPKGLWIKCLSCKT 36
+P+L+K+N + + ++ + T
Sbjct: 15 YPDLRKHNNCMASHLTPAVYARLCDKTT 42
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 25.4 bits (54), Expect = 8.2
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 247 DGFQSSEFLLKKGALDMIIDRRKLRFKIANLLALLQKKSI 286
DG ++ LL+KG + R+ L L + I
Sbjct: 12 DGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDI 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,021,503
Number of extensions: 47092
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 21
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)