BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5221
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQB|A Chain A, Crystal Structure Of Heat Shock Protein Htpx Domain From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3CQB|B Chain B, Crystal Structure Of Heat Shock Protein Htpx Domain From
Vibrio Parahaemolyticus Rimd 2210633
Length = 107
Score = 102 bits (255), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 40 SKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYN-GEINAFATGAFK 98
SK A S+ VI++P N TE WLL+TV + ++ A I P VAIY+ +INAFATGA +
Sbjct: 4 SKGXALRSVGGXVIESPRNETEHWLLETVGRQAQQAGIGXPTVAIYDSADINAFATGAKR 63
Query: 99 NSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQG 142
+ SL+A+S LL + T+ E +A++AHE+SHI+NGD VT L QG
Sbjct: 64 DDSLVAVSTGLLHNXTRDEAEAVLAHEVSHIANGDXVTXTLXQG 107
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
Length = 461
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 90 NAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFII 149
NA+ TG S I + L+ S + EI A++AHEI H +V M++ ++TF+I
Sbjct: 263 NAYFTGLPFTSKRIVLFDTLVNSNSTDEITAVLAHEIGHWQKNHIVNMVIFSQ-LHTFLI 321
Query: 150 LISRIFSYILDCFLLXXXXXXXXXXXXXHKIYGLITTILQIFLGF------------GAS 197
+F+ I + +IT I +GF
Sbjct: 322 F--SLFTSIYRNSSFYNTFGFFVEKSSSGFVDPVITKEFPIIIGFMLFNDLLTPLECAMQ 379
Query: 198 IVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLS--NISIVNDLP 242
+++ SR E++AD AK LG + AL L N+S +N P
Sbjct: 380 FIMSLISRTHEYQAD-AYAKKLGYKQNLCRALIDLQIKNLSTMNVDP 425
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
I FA GA +N LI L + KL + +IAHE++H G++VTM
Sbjct: 328 IPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTM 383
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
I FA GA +N LI L + KL + +IAHE++H G++VTM
Sbjct: 328 IPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTM 383
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAHEISH G++VT
Sbjct: 265 SFPYGGMQNPCLTFVTPTLLAGDKSL--SNVIAHEISHSWTGNLVT 308
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAHEISH G++VT
Sbjct: 265 SFPYGGMENPCLTFVTPTLLAGDKSL--SNVIAHEISHSWTGNLVT 308
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAHEISH G++VT
Sbjct: 270 SFPYGGMENPCLTFVTPTLLAGDKSL--SNVIAHEISHSWTGNLVT 313
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAHEISH G++VT
Sbjct: 264 SFPYGGMENPCLTFVTPTLLAGDKSL--SNVIAHEISHSWTGNLVT 307
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAHEISH G++VT
Sbjct: 264 SFPYGGMENPCLTFVTPTLLAGDKSL--SNVIAHEISHSWTGNLVT 307
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAHEISH G++VT
Sbjct: 262 SFPYGGMENPCLTFVTPTLLAGDKSL--SNVIAHEISHSWTGNLVT 305
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAHEISH G++VT
Sbjct: 264 SFPYGGMENPCLTFVTPTLLAGDKSL--SNVIAHEISHSWTGNLVT 307
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
I F +GA +N L + L + +KL+I +AHE++H G++VTM
Sbjct: 275 IPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTM 330
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 91 AFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVT 136
+F G +N L ++ LL L +IAH+ISH G++VT
Sbjct: 270 SFPYGGMENPCLTFVTPTLLAGDKSL--SNVIAHQISHSWTGNLVT 313
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 80 PEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
P + NG+++AF G+ N I +A+ +E+ K+ + A
Sbjct: 13 PWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVA 53
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 80 PEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
P + NG+++AF G+ N I +A+ +E+ K+ + A
Sbjct: 13 PWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVA 53
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 80 PEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
P + NG+++AF G+ N I +A+ +E+ K+ + A
Sbjct: 13 PWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVA 53
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
I F +GA +N L + L + +KL I +AHE++H G++VTM
Sbjct: 317 IPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTM 372
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 80 PEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
P + NG+++AF G+ N I +A+ +E+ K+ + A
Sbjct: 13 PWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVA 53
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 80 PEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
P + NG+++AF G+ N I +A+ +E+ K+ + A
Sbjct: 13 PWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVA 53
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
I F +GA +N L + L + +KL I +AHE++H G++VTM
Sbjct: 266 IPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTM 321
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 92 FATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
F GA +N L+ N L S K + +IAHE++H G++VT+
Sbjct: 285 FNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTI 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,299,204
Number of Sequences: 62578
Number of extensions: 354578
Number of successful extensions: 1148
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 25
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)