RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5221
(436 letters)
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain,
PSI-2, protein structure INI structural genomics; HET:
MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Length = 107
Score = 138 bits (351), Expect = 2e-40
Identities = 57/104 (54%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 40 SKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYN-GEINAFATGAFK 98
SK +A S+ MVI++P N TE WLL+TV + ++ A I P VAIY+ +INAFATGA +
Sbjct: 4 SKGMALRSVGGMVIESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDSADINAFATGAKR 63
Query: 99 NSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQG 142
+ SL+A+S LL +MT+ E +A++AHE+SHI+NGDMVTM L+QG
Sbjct: 64 DDSLVAVSTGLLHNMTRDEAEAVLAHEVSHIANGDMVTMTLMQG 107
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 86.1 bits (212), Expect = 2e-18
Identities = 39/244 (15%), Positives = 78/244 (31%), Gaps = 22/244 (9%)
Query: 37 LLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNGEINAFATGA 96
+ + + + S + L T+ + N E + +
Sbjct: 252 VYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDS----GMEPRNEEE 307
Query: 97 FKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFS 156
+ + A N + E+ A++ HE+ H G V ++I + + + +
Sbjct: 308 GNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLI 367
Query: 157 YILDCFLLNSYDDSNYNSNYNHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSA 216
+ F Y+S +I + S + SR EF+AD +
Sbjct: 368 GRKELF----AAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAK 423
Query: 217 KLLGTPDPMISALRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAIL 276
K LG + SAL L+ ++ + + F +HP +R+ L
Sbjct: 424 K-LGKAKDLYSALIKLNKDNLGFPVSDWL-------------FSMWHYSHPPLLERLQAL 469
Query: 277 SLLK 280
+K
Sbjct: 470 KTMK 473
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 65.6 bits (160), Expect = 1e-13
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 333 DENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLA 392
D + + + + F+ ++ ++ D + + R + + F+ R F R++L
Sbjct: 9 DPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIA-----REFHRRYRLP 63
Query: 393 DHV---HVVAAFFDQGILNIDLIREVPEALKPRKI 424
V V +A +G+L+I +A P
Sbjct: 64 PGVDPAAVTSALSPEGVLSIQATPASAQASLPSPP 98
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 63.1 bits (154), Expect = 7e-13
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 333 DENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLA 392
+++R+++ + F +L ++T+ + ITG+ A + G +R F ++ L
Sbjct: 5 TADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDE-----HGYISRCFTRKYTLP 59
Query: 393 DHV---HVVAAFFDQGILNID 410
V V ++ +G L ++
Sbjct: 60 PGVDPTQVSSSLSPEGTLTVE 80
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 59.5 bits (144), Expect = 2e-11
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 333 DENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQL- 391
D +K+ I + + F+ DL ++ + D + I G+ ++ +R F R++L
Sbjct: 10 DRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYI-----SREFHRRYRLP 64
Query: 392 --ADHVHVVAAFFDQGILNID---LIREVPEALKPRKIYIN 427
D + + G+L + V R I ++
Sbjct: 65 SNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 60.3 bits (146), Expect = 5e-11
Identities = 22/139 (15%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 294 SAFAPFYRSTIGFDRLAQIFDNVRTEAQQSYPPYNIELVDENKYRITMAIAGFNRSDLEI 353
++ +PFY F R FD +E + ++++++ + + + F+ +L++
Sbjct: 42 TSLSPFYLRPPSFLRAPSWFDTGLSEMR----------LEKDRFSVNLDVKHFSPEELKV 91
Query: 354 ETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLADHV---HVVAAFFDQGILNID 410
+ D + + G+ + + F+ R F ++++ V + ++ G+L ++
Sbjct: 92 KVLGDVIEVHGKHEERQDEHGFIS-----REFHRKYRIPADVDPLTITSSLSSDGVLTVN 146
Query: 411 LIREVPEALKPRKIYINTT 429
R+ R I I
Sbjct: 147 GPRKQVSG-PERTIPITRE 164
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 61.0 bits (147), Expect = 2e-10
Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 22/142 (15%)
Query: 286 IRRSKMTVSAFAPFYRSTIGFDRLAQIFDNVRT-------------EAQQSYPPYNIELV 332
I + + PF F+ + + ++ E Y +
Sbjct: 50 IVNMHRNLFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKD 109
Query: 333 DENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLA 392
+++ + F ++ I+ +++ L + +K + + L
Sbjct: 110 GRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGD------AAMSESVGRSIPLP 163
Query: 393 DHV---HVVAAFFDQGILNIDL 411
V H+ A +L I+
Sbjct: 164 PSVDRNHIQATITTDDVLVIEA 185
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 56.3 bits (136), Expect = 1e-09
Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 14/147 (9%)
Query: 288 RSKMTVSAFAPFYRSTIGFDRLAQIFDNVRTEAQQSYPPYNI-ELVDENKYRITMAIAGF 346
+ MT + + + + + P +I E + ++ + G
Sbjct: 20 ATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIE--GDQHIKVIAWLPGV 77
Query: 347 NRSDLEIETERDTLRITGRKQADTQQRN---FLHRGIATRNFEHRFQLADHVHV--VAAF 401
N+ D+ + DTL I ++ + +L V +A
Sbjct: 78 NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK 137
Query: 402 FDQGILNIDLIREVP--EALKPRKIYI 426
F+ G+L++ +P E+ + I I
Sbjct: 138 FENGVLSV----ILPKAESSIKKGINI 160
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 55.8 bits (135), Expect = 1e-09
Identities = 24/156 (15%), Positives = 59/156 (37%), Gaps = 23/156 (14%)
Query: 286 IRRSKMTVSAFAPFYRSTIGFDRLAQIFDNV--------RTEAQQSYPPYNI-ELVDENK 336
+RRS + F PF + F ++ A + + E
Sbjct: 4 VRRS----NVFDPFADL---WADPFDTFRSIVPAISGGGSETAAFANARMDWKE--TPEA 54
Query: 337 YRITMAIAGFNRSDLEIE-TERDTLRITGRKQADT--QQRNFLHRGIATRNFEHRFQLAD 393
+ + G + ++++E + + L ++G + + + + ++ F RF+L +
Sbjct: 55 HVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLE 114
Query: 394 HVHV--VAAFFDQGILNIDLIREVPEALKPRKIYIN 427
V V A + G+L + + + + + + I I+
Sbjct: 115 DAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 150
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 54.0 bits (130), Expect = 1e-09
Identities = 12/95 (12%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 332 VDENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQL 391
++++++ + + + F+ +L+++ D + + G+ + + F+ +R F ++++
Sbjct: 3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFI-----SREFHRKYRI 57
Query: 392 ADHV---HVVAAFFDQGILNIDLIREVPEALKPRK 423
V + ++ G+L ++ R + P +
Sbjct: 58 PADVDPLTITSSMSSDGVLTVNGPR--KQVSGPER 90
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 52.1 bits (126), Expect = 7e-09
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 333 DENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQ--RNFLHRGIATRNFEHRFQ 390
+ N + + + G + S +E++ ++ L I G +++++ F +F RF
Sbjct: 12 EVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFA 71
Query: 391 LADHVHV--VAAFFDQGILNIDL 411
L D + A G+L I +
Sbjct: 72 LPDSADADGITAAGRNGVLEIRI 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 9e-09
Identities = 73/409 (17%), Positives = 125/409 (30%), Gaps = 122/409 (29%)
Query: 33 SIISLLLSKKIAKWSMNLMVIKN-----------PSNFTEDWLLKTVNKISKNANISTPE 81
++ + LL + +IKN + L + V NA +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG--EGNAQL---- 156
Query: 82 VAIYNG---------EI-NAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISN 131
VAI+ G E+ + + T LI SA L + + + A +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-----KVFTQ 211
Query: 132 G-DMVTMLLIQGVINTFIILISRIFSYILDCFL-LNSYDDSNYNSNYNHKIYGLITTILQ 189
G +++ L L+S S L + L Y + + G + + L+
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP---GELRSYLK 268
Query: 190 IFLGFGASIVVA--------W--FSRN----------------REFRADHGSAKLL---- 219
G +V A W F + + +L
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 220 ----GTPDPMISALRHLSN------ISIVND-LP--KSIAILGIN--NNFKKKSFLKLFA 264
G P PM+S + +L+ ++ N LP K + I +N N + +
Sbjct: 329 ENNEGVPSPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-------VVS 380
Query: 265 THPSFEKRIAILSLLKLSLYFIRRSKMTVSAFAPFYRSTIGF-DRLAQI---FDNVRTEA 320
P SL L+L R++K A + +S I F +R + F V
Sbjct: 381 GPPQ--------SLYGLNLTL-RKAK----APSGLDQSRIPFSERKLKFSNRFLPV---- 423
Query: 321 QQSYP---PYNIELVDENKYRITMAIAGFNRSDLEI-----ETERDTLR 361
+ P + D + FN D++I D LR
Sbjct: 424 --ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LR 469
Score = 40.8 bits (95), Expect = 9e-04
Identities = 50/298 (16%), Positives = 80/298 (26%), Gaps = 124/298 (41%)
Query: 210 RADHGSAKLLGTPDPMISALRHLSNISIVNDLPKSIAIL-------GINNNFKKKSF--- 259
RAD+ G S + IV + P ++ I I N+ F
Sbjct: 1648 RADNHFKDTYG-----------FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 260 -------LKLF------ATHPSFEK------------------RIAILSLLK-------- 280
K+F +T +F A LK
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 281 -----LSL--YFIRRSKMTVSAFA------PFYRSTIGFDRLAQIFDNVRTEAQQSYPPY 327
SL Y +A A S + + R Q P
Sbjct: 1757 ATFAGHSLGEY---------AALASLADVMSI-ESLV---EVVFY----RGMTMQVAVP- 1798
Query: 328 NIELVDENKYRITMAIAGFNRSDLEIETERDTLR-ITGRKQADTQQR----NFLHRGIAT 382
DE R + N + ++ L+ + R T N+
Sbjct: 1799 ----RDELG-RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY------- 1846
Query: 383 RNFEHRFQLADHVHVVAAFFDQG-ILNIDLIREVPEALKPRKIYI---NTTKNTDRIE 436
N E++ Q VAA G + +D + V +K +KI I + + + +E
Sbjct: 1847 -NVENQ-Q------YVAA----GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 33.1 bits (75), Expect = 0.22
Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 56/175 (32%)
Query: 265 THPSFEKRIAILSLLKLSLYFIRRSKMTVSAFAPFYRSTIGFDRLAQIFDNVRTEAQQSY 324
+H S E + L+ + +F A +L + F+ + E + +
Sbjct: 12 SHGSLEHVL----LVPTASFF----------IA---------SQLQEQFNKILPEPTEGF 48
Query: 325 -----PPYNIELVDENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRG 379
P ELV K+ G+ + + + Q L+
Sbjct: 49 AADDEPTTPAELV--GKF------LGY------VSSLVE-------PSKVGQFDQVLN-- 85
Query: 380 IATRNFEHRFQLADHVHVVAAFFDQGILNIDLIREVPEALKPRKIYINTTKNTDR 434
+ FE+ + + +H +AA Q + + + + K YI R
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQ-----ENDTTLVKTKELIKNYITARIMAKR 135
Score = 30.0 bits (67), Expect = 2.0
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 108/293 (36%)
Query: 8 NYFFYKIGLNIKILTI-----SSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTE- 61
N+F G +I L I ++ F G K+I + ++ +
Sbjct: 1651 NHFKDTYGFSI--LDIVINNPVNLTIHFGGE-----KGKRIRENYSAMIFETIVDGKLKT 1703
Query: 62 DWLLKTVNKISKNANISTP-----------------EVAIY-----NGEINAFATGA--- 96
+ + K +N+ S + + E A + G I A AT A
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 97 ---FKNSSLIAISANL-LESMTKL-------EIKAIIAHEISHISNGDM-------VTML 138
+ ++L +++ + +ES+ ++ A+ E+ SN M V
Sbjct: 1764 LGEY--AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR-SNYGMIAINPGRVAAS 1820
Query: 139 LIQGVINTFIILISRIFSYILDCFLLNSYDDS--NYNSNYNHKIYGLITTILQIFLGFGA 196
Q + + + + +++ NYN
Sbjct: 1821 FSQEALQYVVERVGKRTGWLV----------EIVNYNVE-------------------NQ 1851
Query: 197 SIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLS--NISIVNDLPKSIAI 247
V A G + L D + + L + I I+ L KS+++
Sbjct: 1852 QYVAA------------GDLRAL---DTVTNVLNFIKLQKIDIIE-LQKSLSL 1888
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 50.3 bits (121), Expect = 6e-08
Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 306 FDRLAQIFDNV-RTEAQQSYPPYNI-ELVDENKYRITMAIAGFNRSDLEIE-TERDTLRI 362
L + + + R + YPP ++ E + + +AGFN+ ++ + ++ L I
Sbjct: 5 GKELQKRSEELSRGFYELVYPPVDMYE--EGGYLVVVADLAGFNKEKIKARVSGQNELII 62
Query: 363 TGRKQADTQQRNFLHRGIATRNFEHRFQLADHV---HVVAAFFDQGILNIDLIREVPEAL 419
++ +L + + +L +V ++ ++ G+L I + +
Sbjct: 63 EAEREITEPGVKYLTQ--RPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRI--PIAGTS 118
Query: 420 KPR 422
+
Sbjct: 119 VFK 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 5e-05
Identities = 54/380 (14%), Positives = 116/380 (30%), Gaps = 104/380 (27%)
Query: 105 ISANLLESMTKLEIKAIIA--HEISHISNGDMVTMLLIQG--VINTFIILISRI-FSYIL 159
+ ++K EI II +S + LL + ++ F+ + RI + +++
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 160 DCF------------LLNSYDDSNYNSN-----YN----HKIYGLITTILQ------IFL 192
+ D YN N YN L +L+ + +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 193 ----GFGASIVVAWFSRNREFRADHG------SAKLLGTPDPMISALRHL-----SNISI 237
G G + V + + + + K +P+ ++ L+ L N +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 238 VNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAILSLLKLSLYFIR--RSKMTVSA 295
+D +I L I++ ++ L+ +E LL L ++ +A
Sbjct: 216 RSDHSSNI-KLRIHS---IQAELRRLLKSKPYEN-----CLLVL-----LNVQNAKAWNA 261
Query: 296 FAPFYRSTIGF-DRLAQIFDNVRTEAQQSYPPYNIELVDENKYRITMAIAGFNRSDLE-- 352
F I R Q+ D + + +I L + +++
Sbjct: 262 FN--LSCKILLTTRFKQVTDFL-----SAATTTHISLDHHSM--------TLTPDEVKSL 306
Query: 353 ----IETERDTLRITGRKQADTQQRN-FLHRGIAT--RNFEHRFQLADHV------HVVA 399
++ L ++ N IA R+ + HV ++
Sbjct: 307 LLKYLDCRPQDL----PREV--LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 400 AFFDQGILNIDLIREVPEAL 419
+ + L R++ + L
Sbjct: 361 SSLNV--LEPAEYRKMFDRL 378
Score = 29.8 bits (66), Expect = 2.1
Identities = 50/333 (15%), Positives = 96/333 (28%), Gaps = 103/333 (30%)
Query: 33 SIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEV-AIYNGEINA 91
SII+ + +A W + L T+ + S N + E ++ +
Sbjct: 331 SIIAESIRDGLATW--------DNWKHVNCDKLTTIIESSLN-VLEPAEYRKMF----DR 377
Query: 92 FATGAFKNSSLIAISANLLE----SMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTF 147
+ F S+ I LL + K ++ ++ + L++
Sbjct: 378 LSV--FPPSAH--IPTILLSLIWFDVIKSDVMVVVNK---------LHKYSLVEKQPKES 424
Query: 148 IILISRIFSYILDCFLLNSYDDSNYNSNYNHKIYGLIT--TILQIFLGFGASIVVA---W 202
I I +L N H+ ++ I + F +
Sbjct: 425 TI-------SIPSIYL--ELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 203 FSRNREFRADHGSAKLLGTPDPMISALRHLSNISI---VNDLPKSIAILGINNNFKKKSF 259
+S H +G HL NI + + +F+ F
Sbjct: 474 YS--------H-----IG---------HHLKNIEHPERMTLFRM------VFLDFR---F 502
Query: 260 L--KLFATHPSFEKRIAILSLLK-LSLY--FIRRSKMTVSAFAPFYRSTIGFDRLAQIFD 314
L K+ ++ +IL+ L+ L Y +I + P Y + I D
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-------PKYER-----LVNAILD 550
Query: 315 NVRTEAQQSY-PPY----NIELVDENKYRITMA 342
+ + Y I L+ E++ A
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Geobacter sulfurreducens
pca}
Length = 253
Score = 37.7 bits (88), Expect = 0.004
Identities = 33/217 (15%), Positives = 70/217 (32%), Gaps = 62/217 (28%)
Query: 69 NKISKNANISTPE---VAIYNGEINAFAT--GA-FKNSSLIAISANLLESMTKLEIKAII 122
++ A + + + +NAFA G + ++ L+ + N E+ E+ ++
Sbjct: 51 KRLLSGARAVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAADN--ET----ELAGVL 104
Query: 123 AHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSNYNHKIYG 182
AHEI+H + + + + L+ G
Sbjct: 105 AHEINHAVARHGTRQMTQEYGYSLVLSLVL-----------------------------G 135
Query: 183 LITTILQIFLGFGASI-VVAWFSRNREFRADHGSAKLLGT----PDPMISALRHLSNISI 237
+L G + +SR E +AD + + P+ + S + L+ +
Sbjct: 136 DNPNMLAQLAGQLFGKAGMMSYSREYENQADFLGVETMYKAGYNPNGLTSFFQKLNAMD- 194
Query: 238 VNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIA 274
+ + + F+THP +RI
Sbjct: 195 ---------------GGTQSNVARFFSTHPLTSERIQ 216
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.048
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 7/27 (25%)
Query: 252 NNFKK-KSFLKLFA--THPSFEKRIAI 275
KK ++ LKL+A + P+ +AI
Sbjct: 20 QALKKLQASLKLYADDSAPA----LAI 42
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 32.4 bits (74), Expect = 0.30
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 FATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTM 137
F G +N L I+ ++ + +IAHE++H +G++VT
Sbjct: 270 FPFGGMENPRLSFITPTVV--AGDKSLVNLIAHELAHSWSGNLVTN 313
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 32.1 bits (73), Expect = 0.37
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 92 FATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTM 137
F G +N L ++ LL + +IAH+ISH G++VT
Sbjct: 271 FPYGGMENPCLTFVTPTLL--AGDKSLSNVIAHQISHSWTGNLVTN 314
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 32.4 bits (74), Expect = 0.37
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 112 SMTKLEIKAIIAHEISHISNGDMVTM 137
+ +KL I +AHE++H G++VTM
Sbjct: 296 ASSKLGITMTVAHELAHQWFGNLVTM 321
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 31.9 bits (73), Expect = 0.42
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 112 SMTKLEIKAIIAHEISHISNGDMVTM 137
K +IAHEI+H GD+VTM
Sbjct: 253 VTVKRNSANVIAHEIAHQWFGDLVTM 278
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 32.1 bits (73), Expect = 0.42
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 112 SMTKLEIKAIIAHEISHISNGDMVTM 137
+ KL + +IAHE++H G++VTM
Sbjct: 358 ASDKLWVTRVIAHELAHQWFGNLVTM 383
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 31.0 bits (70), Expect = 1.00
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
++ F GA +N L +AN L + I ++ HE H G+ VT+
Sbjct: 259 VSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTL 314
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 29.9 bits (67), Expect = 2.0
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
+ F GA +N L + + I++++ HE H G+ VT
Sbjct: 251 VGDFNMGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTC 306
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 29.0 bits (65), Expect = 3.2
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 92 FATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTM 137
+ G ++ ++ + LL +IAHE++H +G++VT
Sbjct: 271 YPYGGMESPNMTFATPTLLAHDRSNI--DVIAHELAHSWSGNLVTN 314
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding,
endonuclease, HEL hydrolase, nucleotide-binding,
phosphoprotein, RN binding; HET: MSE; 1.68A {Mus
musculus} PDB: 3c4t_A 2eb1_A
Length = 265
Score = 28.6 bits (64), Expect = 3.7
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 222 PDPMISALRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSF 269
PD + +S + FK K++L TH S+
Sbjct: 2 PDAEKTLNHLISGFETFEK------KINYR--FKNKAYLLQAFTHASY 41
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 28.2 bits (62), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 93 ATGAFKNSSLIA-ISANLLESMTKLEIKAIIAHE 125
AT + ++A +S NL E+M ++I I E
Sbjct: 290 ATYNYDKPDIVAEVSKNLGEAMKGIDITQISEAE 323
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 28.0 bits (62), Expect = 7.6
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 89 INAFATGAFKNSSLIAISANLL-------ESMTKLEIKAIIAHEISHISNGDMVTM 137
++ F GA +N L ++ + L+I+ +I HE H G+ VT
Sbjct: 276 VDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTC 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.392
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,567,393
Number of extensions: 401942
Number of successful extensions: 1174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 41
Length of query: 436
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 340
Effective length of database: 4,021,377
Effective search space: 1367268180
Effective search space used: 1367268180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.4 bits)