RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5221
         (436 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 68.5 bits (167), Expect = 6e-15
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 320 AQQSYPPYNIELVDENKYRITMAIAGFNRSDLEIETERDTLRIT---GRKQADTQQRNFL 376
           + + + P +I    +   ++   + G N+ D+ +    DTL I            +R   
Sbjct: 6   SGKGFMPISII-EGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIY 64

Query: 377 HRGIATRNFEHRFQLADHVHV--VAAFFDQGILNIDLIREVPEALKPRKIYI 426
                        +L   V     +A F+ G+L++ L +   E+   + I I
Sbjct: 65  SEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKA--ESSIKKGINI 114


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 25/151 (16%), Positives = 59/151 (39%), Gaps = 13/151 (8%)

Query: 286 IRRSKMTVSAFAPFYRSTIG-FDRLAQIFDNVRTEAQQSYPPYNIEL---VDENKYRITM 341
           +RRS    + F PF       FD    I   +     ++    N  +        +    
Sbjct: 3   VRRS----NVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKA 58

Query: 342 AIAGFNRSDLEIE-TERDTLRITGRKQADTQ--QRNFLHRGIATRNFEHRFQLADHVHV- 397
            + G  + ++++E  + + L ++G +  + +     +     ++  F  RF+L +   V 
Sbjct: 59  DLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE 118

Query: 398 -VAAFFDQGILNIDLIREVPEALKPRKIYIN 427
            V A  + G+L + + +   +  + + I I+
Sbjct: 119 EVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 149


>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 251

 Score = 27.4 bits (60), Expect = 3.0
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 219 LGTPDPMISA--LRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRI 273
            G+ + ++    L +L  I     L   + +L    +F +   L+ FA  P+  +R+
Sbjct: 195 AGSGEEVVKCDRLENLKKIDFGKPLH-VMVVLAKTLHFMEFECLREFADAPAELERL 250


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,573,850
Number of extensions: 73019
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 7
Length of query: 436
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,199,356
Effective search space: 417375888
Effective search space used: 417375888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.8 bits)