BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5222
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 136/306 (44%), Gaps = 13/306 (4%)
Query: 77 FIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA---GHNTTQNYQYSLYPEFLKKPEY 133
F+Q ++IAA A ++ L K + PER+G ++ G T Q ++ E + P
Sbjct: 71 FVQYALIAAQLALEDAGL--KPEDLDPERVGTLVGTGIGGMETWEAQSRVFLE--RGPNR 126
Query: 134 LSPRYAIQFMDSNQIGI-MSEIFNIRXXXXXXXXXXXXXXXXXXXXMRLIQNNIVDACLI 192
+SP + I M +N ++ + +R+IQ D L
Sbjct: 127 ISP-FFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLA 185
Query: 193 ISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKN 252
++PM I AF + A+ +N P+K RPF +GF+ G+ + L++E ++
Sbjct: 186 GGTEAAITPMAIGAFAVMRALSTRN--EEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEH 243
Query: 253 IKILNKSYLARLLG--GVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGS 310
K A L+G + H P P M LK +G+ + Y+N HG+
Sbjct: 244 AKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGT 303
Query: 311 SSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPN 370
S+P+GD+ E+ AIK V+ +H GH L ++G VE IA+V + I P
Sbjct: 304 STPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPT 363
Query: 371 LNLESP 376
+NLE P
Sbjct: 364 INLEDP 369
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 133/314 (42%), Gaps = 17/314 (5%)
Query: 71 AQKSPLFIQTSIIAALQAWYNSKL-----HKKKYKILPERIGLIIAGHNTTQNYQYSLYP 125
A++ F ++ A+ QA ++KL + + +L IG I G ++ Q L
Sbjct: 71 AKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVL---IGTGIGGLKVLEDQQTIL-- 125
Query: 126 EFLKKPEYLSPRYAIQFMDSNQIGIMSEI-FNIRXXXXXXXXXXXXXXXXXXXXMRLIQN 184
K P SP + I M +N ++ I + RL+QN
Sbjct: 126 -LDKGPSRCSP-FMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQN 183
Query: 185 NIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAA 244
A + ++P+ F + A+ +N + P RPFDK +GF+ G+ S
Sbjct: 184 GYAKAMICGGTEAAITPLSYAGFASARALSFRN--DDPLHASRPFDKDRDGFVMGEGSGI 241
Query: 245 LLIEGNKNIKILNKSYLARLLGGVINLHA--TASPEPNLNNEISVMNSVLKQSGLKKNMI 302
L++E ++ ++G + A +P P+ + LK SGLK M+
Sbjct: 242 LILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMV 301
Query: 303 DYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQM 362
Y+N HG+S+P D E AIK+ NH GH L SG +E +A+V+ +
Sbjct: 302 SYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAI 361
Query: 363 RKKFIHPNLNLESP 376
+ + P +NLE+P
Sbjct: 362 AEDKVPPTINLENP 375
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 202 MEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYL 261
+ I AF + AM +N + P++ RPFDK +GF++G+A A +LIE ++ K L
Sbjct: 205 LPIAAFSMMRAMSTRN--DEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPL 262
Query: 262 ARLLGGVINLHA--TASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIE 319
ARLLG I A +P + M L+ +GL ID++N HG+++P+GD E
Sbjct: 263 ARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAE 322
Query: 320 ISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP 376
+AI+ + GH + + G +E + +V+ +R I P LN E+P
Sbjct: 323 ANAIRVAGCDQ---AAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETP 376
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 202 MEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYL 261
+ I AF + AM +N + P++ RPFDK +GF++G+A A +LIE ++ K L
Sbjct: 205 LPIAAFSMMRAMSTRN--DEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPL 262
Query: 262 ARLLGGVINLHA--TASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIE 319
ARLLG I A +P + M L+ +GL ID++N HG+++P+GD E
Sbjct: 263 ARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAE 322
Query: 320 ISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP 376
+AI+ + GH + + G +E + +V+ +R I P LN E+P
Sbjct: 323 ANAIRVAGCDQ---AAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETP 376
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 5/198 (2%)
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
++I+ DA + A ++ + F A A+ + P+ CRPFDK +GFI
Sbjct: 175 FKVIERGDADAXITGGAEAPITKXSLAGFTANKAL---SLNPDPETACRPFDKDRDGFII 231
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLG--GVINLHATASPEPNLNNEISVMNSVLKQSG 296
G+ + +++E ++ K A ++G + + +P PN + +G
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAG 291
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
L + +DY+N HG+S+P D+ E AIK V+ H GH L +SG +E I
Sbjct: 292 LTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAI 351
Query: 357 ASVIQMRKKFIHPNLNLE 374
+++ +R I P ++L+
Sbjct: 352 FALLTIRDNIIAPTIHLK 369
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 5/201 (2%)
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
R+IQ D + + + + + F A+ K F + P++ RPFD +GF+ G
Sbjct: 191 RMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTK-FNSSPQEASRPFDCDRDGFVIG 249
Query: 240 QASAALLIEGNKNIKILNKSYLARLLGGVI--NLHATASPEPNLNNEISVMNSVLKQSGL 297
+ S +++E ++ K A L G + + H P + + M L+QSGL
Sbjct: 250 EGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGL 309
Query: 298 KKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXX--XXXXXXGHCLYSSGIVEI 355
N IDY+N H +S+P+GD +E AIK V+ H GH L ++G VE
Sbjct: 310 CPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEA 369
Query: 356 IASVIQMRKKFIHPNLNLESP 376
I S++ + LN+++P
Sbjct: 370 IFSILAIHHGVAPMTLNVKNP 390
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 188 DACLIISAMTD--LSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAAL 245
DA ++++ TD +SP+ + F A+ + + PK CRPF +GF+ G+ +A L
Sbjct: 212 DADVMVAGGTDSCISPLSLAGFSRARAL---STNSDPKLACRPFHPKRDGFVMGEGAAVL 268
Query: 246 LIEGNKNIKILNKSYLARLLGGVINLHAT--ASPEPNLNNEISVMNSVLKQSGLKKNMID 303
++E ++ A +LG ++ A +P+P + M + LK +G++ I
Sbjct: 269 VLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEIS 328
Query: 304 YLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMR 363
Y+N H +S+PLGD E AIK ++K+H GH L ++G VE + +
Sbjct: 329 YINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACY 388
Query: 364 KKFIHPNLNLE 374
+ + P LNL+
Sbjct: 389 YQKLPPTLNLD 399
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 188 DACLIISAMTD--LSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAAL 245
DA ++++ TD +SP+ + F A+ + + PK CRPF +GF+ G+ +A L
Sbjct: 206 DADVMVAGGTDSCISPLSLAGFSRARAL---STNSDPKLACRPFHPKRDGFVMGEGAAVL 262
Query: 246 LIEGNKNIKILNKSYLARLLGGVINLHAT--ASPEPNLNNEISVMNSVLKQSGLKKNMID 303
++E ++ A +LG ++ A +P+P + M + LK +G++ I
Sbjct: 263 VLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEIS 322
Query: 304 YLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMR 363
Y+N H +S+PLGD E AIK ++K+H GH L ++G VE + +
Sbjct: 323 YINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACY 382
Query: 364 KKFIHPNLNLE 374
+ + P LNL+
Sbjct: 383 YQKLPPTLNLD 393
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 157/380 (41%), Gaps = 23/380 (6%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQXXXXXXXXXXXXXXXXXXXLNKITDLS 60
MG +S IG D+ + + +KG +GID + N I D
Sbjct: 35 MGALSPIGNDVKTTWENALKGVNGID------KITRIDTEPYSVHLAGELKNFN-IEDHI 87
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLII-AGHNTTQNY 119
+KK+ A++ F Q +I+AA +A +++L + +RIG+ I +G + +
Sbjct: 88 DKKE------ARRMDRFTQYAIVAAREAVKDAQLDINENTA--DRIGVWIGSGIGGMETF 139
Query: 120 QYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXXXXXM 179
+ + K P +SP + + G +S +
Sbjct: 140 EIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAF 199
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
+++Q DA + ++ M I F A A+ + + CRPF + +GF+ G
Sbjct: 200 KIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDI---ETACRPFQEGRDGFVMG 256
Query: 240 QASAALLIEGNKNIKILNKSYLARLLG-GVIN--LHATASPEPNLNNEISVMNSVLKQSG 296
+ + L+IE ++ + + A ++G G H TA P P M + + +G
Sbjct: 257 EGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITA-PAPEGEGGSRAMQAAMDDAG 315
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
++ + YLN HG+S+P+GD E+ AIK + GH L ++G +E I
Sbjct: 316 IEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAI 375
Query: 357 ASVIQMRKKFIHPNLNLESP 376
S + ++ + P ++ +P
Sbjct: 376 FSALSIKDSKVAPTIHAVTP 395
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 13/311 (4%)
Query: 72 QKSPLFIQTSIIAALQAWYNSKLH---KKKYKILPERIGLIIAGHNTTQNYQYSLYPEFL 128
+K FIQ I+A +QA +S L + +I I +N+ +
Sbjct: 83 RKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMN---- 138
Query: 129 KKPEYLSPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXXXXXMRLIQNNIVD 188
P +SP + + + G ++ ++ +R R+I D
Sbjct: 139 GGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDAD 198
Query: 189 ACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIE 248
+ A +P+ + F A A+ +N + P+ RP+DK +GF+ G + L++E
Sbjct: 199 VMVAGGAEKASTPLGVGGFGAARALSTRN--DNPQAASRPWDKERDGFVLGDGAGMLVLE 256
Query: 249 GNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYL 305
++ K A L+G ++ H T+ PE N M + L+ +G++ + I Y+
Sbjct: 257 EYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGAALAMANALRDAGIEASQIGYV 315
Query: 306 NTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKK 365
N HG+S+P GDK E A+K ++ GH L ++G VE I S++ +R +
Sbjct: 316 NAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQ 375
Query: 366 FIHPNLNLESP 376
+ P +NL++P
Sbjct: 376 AVPPTINLDNP 386
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
R+I D + A +P+ + F A A+ +N + P+ RP+DK +GF+ G
Sbjct: 190 RIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRN--DNPQAASRPWDKERDGFVLG 247
Query: 240 QASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSG 296
+ L++E ++ K A L+G ++ H T+ PE N M + L+ +G
Sbjct: 248 DGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGAALAMANALRDAG 306
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
++ + I Y+N HG+S+P GDK E A+K ++ GH L ++G VE I
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESI 366
Query: 357 ASVIQMRKKFIHPNLNLESP 376
S++ +R + + P +NL++P
Sbjct: 367 YSILALRDQAVPPTINLDNP 386
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
R+I D + A +P+ + F A A+ +N + P+ RP+DK +GF+ G
Sbjct: 190 RIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRN--DNPQAASRPWDKERDGFVLG 247
Query: 240 QASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSG 296
+ L++E ++ K A L+G ++ H T+ PE N M + L+ +G
Sbjct: 248 DGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGAALAMANALRDAG 306
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
++ + I Y+N HG+S+P GDK E A+K ++ GH L ++G VE I
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGAVESI 366
Query: 357 ASVIQMRKKFIHPNLNLESP 376
S++ +R + + P +NL++P
Sbjct: 367 YSILALRDQAVPPTINLDNP 386
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
R+I D + A +P+ + F A A+ +N + P+ RP+DK +GF+ G
Sbjct: 175 RIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRN--DNPQAASRPWDKERDGFVLG 232
Query: 240 QASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSG 296
+ L++E ++ K A L+G ++ H T+ PE N M + L+ +G
Sbjct: 233 DGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGAALAMANALRDAG 291
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
++ + I Y+N HG+S+P GDK E A+K ++ GH L ++G VE I
Sbjct: 292 IEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESI 351
Query: 357 ASVIQMRKKFIHPNLNLESP 376
S++ +R + + P +NL++P
Sbjct: 352 YSILALRDQAVPPTINLDNP 371
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
R+I D + A +P+ + F A A+ +N + P+ RP+DK +GF+ G
Sbjct: 190 RIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRN--DNPQAASRPWDKERDGFVLG 247
Query: 240 QASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSG 296
+ L++E ++ K A L+G ++ H T+ PE N M + L+ +G
Sbjct: 248 DGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGAALAMANALRDAG 306
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
++ + I Y+N HG+S+P GDK E A+K ++ GH L ++G VE I
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESI 366
Query: 357 ASVIQMRKKFIHPNLNLESP 376
S++ +R + + P +NL++P
Sbjct: 367 YSILALRDQAVPPTINLDNP 386
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 6/201 (2%)
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
MR+I+ D L A + + F A A+ F P + RPFD+ +GF+
Sbjct: 204 MRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALS-TGFSEEPVRASRPFDRDRDGFVM 262
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLG-GVIN--LHATASPEPNLNNEISVMNSVLKQS 295
G+ +A +++E + +A ++G G H TA P+ + + + M L+
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPD-DGSGAMRAMKLALRMG 321
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
+ +DY+N H +S+P+GD EI A+K V+ GH L ++G +E
Sbjct: 322 DVAPEQVDYVNAHATSTPVGDAGEIEALKTVF-GVGAGPAISSTKSATGHLLGAAGAIEA 380
Query: 356 IASVIQMRKKFIHPNLNLESP 376
S++ +R + LNLE P
Sbjct: 381 AFSILALRDGVLPGTLNLEHP 401
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 6/201 (2%)
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
MR+I+ D L A + + F A A+ F P + RPFD+ +GF+
Sbjct: 204 MRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALS-TGFSEEPVRASRPFDRDRDGFVM 262
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLG-GVIN--LHATASPEPNLNNEISVMNSVLKQS 295
G+ +A +++E + +A ++G G H TA P+ + + + M L+
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPD-DGSGAMRAMKLALRMG 321
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
+ +DY+N H +S+P+GD EI A+K V+ GH L ++G +E
Sbjct: 322 DVAPEQVDYVNAHATSTPVGDAGEIEALKTVF-GVGAGPAISSTKSATGHLLGAAGAIEA 380
Query: 356 IASVIQMRKKFIHPNLNLESP 376
S++ +R + LNLE P
Sbjct: 381 AFSILALRDGVLPGTLNLEHP 401
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 222 PKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVI---NLHATASPE 278
P CRPFD+ +GF++G+ A LLIE ++ K + LAR++G I H A P+
Sbjct: 240 PAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVA-PD 298
Query: 279 PNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXX 338
PN + ++ +GL ID++N H + + +GD E AI +
Sbjct: 299 PNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGN--RPAVYA 356
Query: 339 XXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNL 373
GH + + G VE I +V+ +R + I P LNL
Sbjct: 357 PKSALGHSVGAVGAVESILTVLALRDQVIPPTLNL 391
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 8/191 (4%)
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
R I+ D L+ ++P I F A+ A+ + P + PFDK GF+
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTAL---STTEDPTRASIPFDKDRNGFVM 250
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLG--GVINLHATASPEPNLNNEISVMNSVLKQSG 296
G+ S L++E ++ + + LA ++G + + SP P I + L+++
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
+ + Y+N HG+S+P +K E AI V GH L ++G VE I
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKEV---PVSSTKSFTGHLLGAAGAVEAI 367
Query: 357 ASVIQMRKKFI 367
++ MR F+
Sbjct: 368 VTIEAMRHNFV 378
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 8/191 (4%)
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
R I+ D L+ ++P I F A+ A+ + P + PFDK GF+
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTAL---STTEDPTRASIPFDKDRNGFVM 250
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLG--GVINLHATASPEPNLNNEISVMNSVLKQSG 296
G+ S L++E ++ + + LA ++G + + SP P I + L+++
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
+ + Y+N HG+S+P +K E AI V GH L ++G VE I
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK---AVPVSSTKSFTGHLLGAAGAVEAI 367
Query: 357 ASVIQMRKKFI 367
++ MR F+
Sbjct: 368 VTIEAMRHNFV 378
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 155/386 (40%), Gaps = 31/386 (8%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY--EINNTQXXXXXXXXXXXXXXXXXXXLNKITD 58
+GIVSSIG + SL +G+SGI + E+ ++ T
Sbjct: 21 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKL----------DTTG 70
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
L ++K ++ + ++ + ++ QA ++ L + Y+ P R+GLI +
Sbjct: 71 LIDRK---VVRFMSDASIY---AFLSMEQAIADAGLSPEAYQNNP-RVGLIAGSGGGSPR 123
Query: 119 YQYSLYPEFLKKPEYL---SPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXX 175
+Q + ++ P L P + M S ++ F I
Sbjct: 124 FQV-FGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCI 182
Query: 176 XXXMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
+ IQ D M + F A+GA+ K + + P+K R +D +G
Sbjct: 183 GNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTK-YNDTPEKASRTYDAHRDG 240
Query: 236 FIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQS 295
F+ +++E ++ A ++G P+ + M +
Sbjct: 241 FVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHG- 299
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
IDYLN+HG+S+P+GD E++AI+EV+ + GH L ++G+ E
Sbjct: 300 --VDTPIDYLNSHGTSTPVGDVKELAAIREVFGDK--SPAISATAAMTGHSLGAAGVQEA 355
Query: 356 IASVIQMRKKFIHPNLNLESPIDNQA 381
I S++ + FI P++N+E +D QA
Sbjct: 356 IYSLLMLEHGFIAPSINIEE-LDEQA 380
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 155/386 (40%), Gaps = 31/386 (8%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY--EINNTQXXXXXXXXXXXXXXXXXXXLNKITD 58
+GIVSSIG + SL +G+SGI + E+ ++ T
Sbjct: 9 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKL----------DTTG 58
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
L ++K ++ + ++ + ++ QA ++ L + Y+ P R+GLI +
Sbjct: 59 LIDRK---VVRFMSDASIY---AFLSMEQAIADAGLSPEAYQNNP-RVGLIAGSGGGSPR 111
Query: 119 YQYSLYPEFLKKPEYL---SPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXX 175
+Q + ++ P L P + M S ++ F I
Sbjct: 112 FQV-FGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCI 170
Query: 176 XXXMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
+ IQ D M + F A+GA+ K + + P+K R +D +G
Sbjct: 171 GNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTK-YNDTPEKASRTYDAHRDG 228
Query: 236 FIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQS 295
F+ +++E ++ A ++G P+ + M +
Sbjct: 229 FVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGV 288
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
IDYLN+HG+S+P+GD E++AI+EV+ + GH L ++G+ E
Sbjct: 289 ---DTPIDYLNSHGTSTPVGDVKELAAIREVFGDK--SPAISATRAMTGHSLGAAGVQEA 343
Query: 356 IASVIQMRKKFIHPNLNLESPIDNQA 381
I S++ + FI P++N+E +D QA
Sbjct: 344 IYSLLMLEHGFIAPSINIEE-LDEQA 368
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 155/386 (40%), Gaps = 31/386 (8%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY--EINNTQXXXXXXXXXXXXXXXXXXXLNKITD 58
+GIVSSIG + SL +G+SGI + E+ ++ T
Sbjct: 9 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKL----------DTTG 58
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
L ++K ++ + ++ + ++ QA ++ L + Y+ P R+GLI +
Sbjct: 59 LIDRK---VVRFMSDASIY---AFLSMEQAIADAGLSPEAYQNNP-RVGLIAGSGGGSPR 111
Query: 119 YQYSLYPEFLKKPEYL---SPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXX 175
+Q + ++ P L P + M S ++ F I
Sbjct: 112 FQV-FGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCI 170
Query: 176 XXXMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
+ IQ D M + F A+GA+ K + + P+K R +D +G
Sbjct: 171 GNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTK-YNDTPEKASRTYDAHRDG 228
Query: 236 FIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQS 295
F+ +++E ++ A ++G P+ + M +
Sbjct: 229 FVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGV 288
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
IDYLN+HG+S+P+GD E++AI+EV+ + GH L ++G+ E
Sbjct: 289 ---DTPIDYLNSHGTSTPVGDVKELAAIREVFGDK--SPAISATKAMTGHSLGAAGVQEA 343
Query: 356 IASVIQMRKKFIHPNLNLESPIDNQA 381
I S++ + FI P++N+E +D QA
Sbjct: 344 IYSLLMLEHGFIAPSINIEE-LDEQA 368
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 155/386 (40%), Gaps = 31/386 (8%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY--EINNTQXXXXXXXXXXXXXXXXXXXLNKITD 58
+GIVSSIG + SL +G+SGI + E+ ++ T
Sbjct: 9 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKL----------DTTG 58
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
L ++K ++ + ++ + ++ QA ++ L + Y+ P R+GLI +
Sbjct: 59 LIDRK---VVRFMSDASIY---AFLSMEQAIADAGLSPEAYQNNP-RVGLIAGSGGGSPR 111
Query: 119 YQYSLYPEFLKKPEYL---SPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXX 175
+Q + ++ P L P + M S ++ F I
Sbjct: 112 FQV-FGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCI 170
Query: 176 XXXMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
+ IQ D M + F A+GA+ K + + P+K R +D +G
Sbjct: 171 GNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTK-YNDTPEKASRTYDAHRDG 228
Query: 236 FIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQS 295
F+ +++E ++ A ++G P+ + M +
Sbjct: 229 FVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGV 288
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
IDYLN+HG+S+P+GD E++AI+EV+ + GH L ++G+ E
Sbjct: 289 ---DTPIDYLNSHGTSTPVGDVKELAAIREVFGDK--SPAISATKAMTGHSLGAAGVQEA 343
Query: 356 IASVIQMRKKFIHPNLNLESPIDNQA 381
I S++ + FI P++N+E +D QA
Sbjct: 344 IYSLLMLEHGFIAPSINIEE-LDEQA 368
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 207 FHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLG 266
F A+GA+ K + + P+K R +D +GF+ +++E ++ A ++G
Sbjct: 201 FDAMGALSTK-YNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVG 259
Query: 267 GVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEV 326
P+ + M + IDYLN+HG+S+P+GD E++AI+EV
Sbjct: 260 YGATSDGADMVAPSGEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREV 316
Query: 327 YKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA 381
+ + GH L ++G+ E I S++ + FI P++N+E +D QA
Sbjct: 317 FGDK--SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEE-LDEQA 368
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 207 FHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLG 266
F A+GA+ K + + P+K R +D +GF+ +++E ++ A ++G
Sbjct: 201 FDAMGALSTK-YNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVG 259
Query: 267 GVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEV 326
P+ + M + IDYLN+HG+S+P+GD E++AI+EV
Sbjct: 260 YGATSDGADMVAPSGEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREV 316
Query: 327 YKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA 381
+ + GH L ++G+ E I S++ + FI P++N+E +D QA
Sbjct: 317 FGDK--SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEE-LDEQA 368
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 207 FHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLG 266
F A+GA+ K + + P+K R +D +GF+ +++E ++ A ++G
Sbjct: 213 FDAMGALSTK-YNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVG 271
Query: 267 GVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEV 326
P+ + M + IDYLN+HG+S+P+GD E++AI+EV
Sbjct: 272 YGATSDGADMVAPSGEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREV 328
Query: 327 YKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA 381
+ + GH L ++G+ E I S++ + FI P++N+E +D QA
Sbjct: 329 FGDK--SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEE-LDEQA 380
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 154/386 (39%), Gaps = 31/386 (8%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY--EINNTQXXXXXXXXXXXXXXXXXXXLNKITD 58
+GIVSSIG + SL +G+SGI + E+ ++ T
Sbjct: 21 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKL----------DTTG 70
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
L ++K ++ + ++ + ++ QA ++ L + Y+ P R+GLI +
Sbjct: 71 LIDRK---VVRFMSDASIY---AFLSMEQAIADAGLSPEAYQNNP-RVGLIAGSGGGSPR 123
Query: 119 YQYSLYPEFLKKPEYL---SPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXX 175
+Q + ++ P L P + M S ++ F I
Sbjct: 124 FQV-FGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCI 182
Query: 176 XXXMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
+ IQ D M + F A+GA+ K + + P+K R +D +G
Sbjct: 183 GNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTK-YNDTPEKASRTYDAHRDG 240
Query: 236 FIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQS 295
F+ +++E ++ A ++G P+ + M +
Sbjct: 241 FVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGV 300
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
IDYLN+ G+S+P+GD E++AI+EV+ + GH L ++G+ E
Sbjct: 301 ---DTPIDYLNSQGTSTPVGDVKELAAIREVFGDK--SPAISATKAMTGHSLGAAGVQEA 355
Query: 356 IASVIQMRKKFIHPNLNLESPIDNQA 381
I S++ + FI P++N+E +D QA
Sbjct: 356 IYSLLMLEHGFIAPSINIEE-LDEQA 380
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 8/191 (4%)
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
R I+ D L+ ++P I F A+ A+ + P + PFDK GF+
Sbjct: 195 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTAL---STTEDPTRASIPFDKDRNGFVM 251
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLG--GVINLHATASPEPNLNNEISVMNSVLKQSG 296
G+ S L++E ++ + + LA ++G + + SP P I + L+++
Sbjct: 252 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 311
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
+ + Y+N G+S+P +K E AI V GH L ++G VE I
Sbjct: 312 ISPEQVAYVNAAGTSTPANEKGESGAIVAVLGKEV---PVSSTKSFTGHLLGAAGAVEAI 368
Query: 357 ASVIQMRKKFI 367
++ MR F+
Sbjct: 369 VTIEAMRHNFV 379
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 16/297 (5%)
Query: 83 IAALQAWYNSKLHKKKYKILPERIGLII-AGHNTTQNYQYSLYPEFLKKPEYLSPRYAIQ 141
IA QA ++ L +++ + ER G+I+ +G +T+ S K P+ + P +
Sbjct: 81 IAMDQAIADAGLTEEE--VSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPK 138
Query: 142 FMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXXXXXMRLIQNNIVDACLIISAMTDLSP 201
M S ++ F I+ +IQ D + DL
Sbjct: 139 AMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDR-MFAGGCEDLDW 197
Query: 202 MEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYL 261
F A+GAM K + + P R +DK +GF+ + L++E +
Sbjct: 198 TLSVLFDAMGAMSSK-YNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARG---- 252
Query: 262 ARLLGGVINLHATASP----EPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
A++ G ++ AT+ P+ I M L K IDY+N H +S+P GD
Sbjct: 253 AKIYGEIVGYGATSDGYDMVAPSGEGAIRCMKMALSTVTSK---IDYINPHATSTPAGDA 309
Query: 318 IEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLE 374
EI AI++++ GH L ++G+ E I S++ M+ FI + ++E
Sbjct: 310 PEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIE 366
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 154/386 (39%), Gaps = 31/386 (8%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY--EINNTQXXXXXXXXXXXXXXXXXXXLNKITD 58
+GIVSSIG + SL +G+SGI + E+ ++ T
Sbjct: 21 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKL----------DTTG 70
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
L ++K ++ + ++ + ++ QA ++ L + Y+ P R+GLI +
Sbjct: 71 LIDRK---VVRFMSDASIY---AFLSMEQAIADAGLSPEAYQNNP-RVGLIAGSGGGSPR 123
Query: 119 YQYSLYPEFLKKPEYL---SPRYAIQFMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXX 175
+Q + ++ P L P + M S ++ F I
Sbjct: 124 FQV-FGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCI 182
Query: 176 XXXMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
+ IQ D M + F A+GA+ K + + P+K R +D +G
Sbjct: 183 GNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTK-YNDTPEKASRTYDAHRDG 240
Query: 236 FIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQS 295
F+ +++E ++ A ++G P+ + M +
Sbjct: 241 FVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGV 300
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
IDYLN+ G+S+P+GD E++AI+EV+ + GH L ++G+ E
Sbjct: 301 ---DTPIDYLNSEGTSTPVGDVKELAAIREVFGDK--SPAISATKAMTGHSLGAAGVQEA 355
Query: 356 IASVIQMRKKFIHPNLNLESPIDNQA 381
I S++ + FI P++N+E +D QA
Sbjct: 356 IYSLLMLEHGFIAPSINIEE-LDEQA 380
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 16/297 (5%)
Query: 83 IAALQAWYNSKLHKKKYKILPERIGLII-AGHNTTQNYQYSLYPEFLKKPEYLSPRYAIQ 141
IA QA ++ L +++ + ER G+I+ +G +T+ S K P+ + P +
Sbjct: 98 IAMDQAIADAGLTEEE--VSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPK 155
Query: 142 FMDSNQIGIMSEIFNIRXXXXXXXXXXXXXXXXXXXXMRLIQNNIVDACLIISAMTDLSP 201
M S ++ F I+ +IQ D + DL
Sbjct: 156 AMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDR-MFAGGCEDLDW 214
Query: 202 MEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYL 261
F A+GAM K + + P R +DK +GF+ + L++E +
Sbjct: 215 TLSVLFDAMGAMSSK-YNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARG---- 269
Query: 262 ARLLGGVINLHATASP----EPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
A++ G ++ AT+ P+ I M L K IDY+N H +S+P GD
Sbjct: 270 AKIYGEIVGYGATSDGYDMVAPSGEGAIRCMKMALSTVTSK---IDYINPHATSTPAGDA 326
Query: 318 IEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLE 374
EI AI++++ GH L ++G+ E I S++ M+ FI + ++E
Sbjct: 327 PEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIE 383
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 4/199 (2%)
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
+R I+ D +A T ++P+ + F AI A +N + P+ RPFD +GF+
Sbjct: 180 VRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARN--DDPEHASRPFDGTRDGFVL 237
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLGGVINLHA--TASPEPNLNNEISVMNSVLKQSG 296
+ +A ++E + A + G +A + + + L +S
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
IDY+N HGS + D+ E +A K H GH L + G +EI
Sbjct: 298 TDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIA 357
Query: 357 ASVIQMRKKFIHPNLNLES 375
A V+ + + P NL +
Sbjct: 358 ACVLALEHGVVPPTANLRT 376
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 5/183 (2%)
Query: 191 LIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGN 250
++ +LS + F + A +N + P T RPFD +G + G+ +A L++E
Sbjct: 190 MLAGGAEELSGPAVAVFDTLYATSTRN--DEPHLTPRPFDAKRDGLVVGEGAATLVLEEY 247
Query: 251 KNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGS 310
++ K + A ++G N +P + M L+ + L N I Y+N HG+
Sbjct: 248 EHAKARGATIHAEIVGFGCNSDGAHMTQPTASTMARAMQLALEDAKLDANAIAYVNAHGT 307
Query: 311 SSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPN 370
S+ GD E A + GH L + G +E ++ M++ + P
Sbjct: 308 STDRGDVAESQATARTFGERM---PISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPT 364
Query: 371 LNL 373
LNL
Sbjct: 365 LNL 367
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 7/175 (4%)
Query: 207 FHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLG 266
F A GA+ K + + P K R +D+ +GF+ +++E ++ A ++G
Sbjct: 205 FDAXGALSTK-YNDTPAKASRTYDQDRDGFVIAGGGGXVVVEELEHALARGAHIYAEIVG 263
Query: 267 GVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEV 326
P+ E +V +G+ IDY N HG+S+P+GD E+ AI+EV
Sbjct: 264 YGATSDGADXVAPS--GEGAVRCXQXAXAGVD-TPIDYXNVHGTSTPVGDVKELGAIREV 320
Query: 327 YKNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA 381
+ N+ GH L ++G+ E I S++ + FI P++N+++ +D QA
Sbjct: 321 FGNN--TPAISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSINIDN-LDEQA 372
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 8/201 (3%)
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGG-KNFYNFPKKTCRPFDKLAEGFIY 238
RLI D L + ++ + + F A A+ +N + P++ RP+D +GF+
Sbjct: 186 RLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRN--DDPERASRPYDVDRDGFVM 243
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQS 295
G+ +A +++E ++ K A ++G ++ H TA E + S+M + LK++
Sbjct: 244 GEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMM-AALKRA 302
Query: 296 GLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEI 355
+ + +DY+N HG+S+ + D IE++A++ V + GH L ++G E
Sbjct: 303 QVNVSELDYINAHGTST-MADVIELAAVERVLGYYAPQVSMSSTKSSIGHLLGAAGAAEA 361
Query: 356 IASVIQMRKKFIHPNLNLESP 376
I V+ +R LNLE+P
Sbjct: 362 IFCVLAIRDNIAPATLNLENP 382
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 6/200 (3%)
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
RLI D + + +S + + F A A+ + + P RP+D+ +GF+ G
Sbjct: 190 RLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTER-NDDPTAASRPYDEDRDGFVMG 248
Query: 240 QASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSG 296
+ + +++E ++ A ++G ++ H TA E + M + LK++G
Sbjct: 249 EGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQ-RCMVAALKRAG 307
Query: 297 LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXXXXXXXGHCLYSSGIVEII 356
+ + IDY+N HG+S+ + D IE+ A++ V GH L ++G E +
Sbjct: 308 IVPDEIDYINAHGTST-MADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAV 366
Query: 357 ASVIQMRKKFIHPNLNLESP 376
S + +R LNL++P
Sbjct: 367 FSTLAIRDNIAPATLNLDNP 386
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 226 CRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATAS--PEPNLNN 283
C+PF K A+GF + + L+++ + + LA L G +N ++ P+
Sbjct: 250 CKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPA 309
Query: 284 EISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVY---KNHFXXXXXXXXX 340
+ V+ L+ +G++ +DY+ HG+ + LGD IE+ A+ Y ++
Sbjct: 310 QQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGSVK 369
Query: 341 XXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP 376
GH ++G+ + +V+ +R L+ + P
Sbjct: 370 SNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEP 405
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Query: 218 FYNFPKKTC-------RPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVIN 270
F +F ++ + F A+GF + + +L+E + LA + G +N
Sbjct: 213 FVDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALN 272
Query: 271 LHATAS--PEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVY- 327
++ P+ + V+ L+ GL+ +D + HG+ + LGD IE +A+ + Y
Sbjct: 273 QDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYG 332
Query: 328 --KNHFXXXXXXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP 376
++ GH ++G+ ++ V+ +R + L++E P
Sbjct: 333 RDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEP 383
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 222 PKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINL-----HATAS 276
P+ TC+ FD G+ + A+L+ K L + A +L N
Sbjct: 210 PEGTCKAFDTAGNGYCRSEGVVAVLL----TKKSLARRVYATILNAGTNTDGFKEQGVTF 265
Query: 277 PEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAI-KEVYKNHFXXXX 335
P ++ ++ + S+ + +G+ +Y+ HG+ + +GD E++ I + +
Sbjct: 266 PSGDIQEQL--IRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLL 323
Query: 336 XXXXXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP 376
GH +SG+ + ++ + PNL+ SP
Sbjct: 324 IGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSP 364
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 8/157 (5%)
Query: 222 PKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNL 281
P + PFD+ A G++ G+ A L++E + + + G + +T P P
Sbjct: 219 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRH---DAYGELAGCASTFDPAPGS 275
Query: 282 NNEISVMNSV---LKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFXXXXXXX 338
+ ++ L +G +D + G+ P D E AI V+
Sbjct: 276 GRPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGRE--GVPVTV 333
Query: 339 XXXXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLES 375
G G ++++ +++ +R+ I P + S
Sbjct: 334 PKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTS 370
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Query: 225 TCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPE---PNL 281
TCR FD G+ +A A+L+ K L + A +L N + P+
Sbjct: 211 TCRSFDAEGTGYCRAEAVVAVLLTK----KSLARRVYATILNAGTNTDGSKEQGVTFPSG 266
Query: 282 NNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAI-KEVYKNHFXXXXXXXXX 340
+ + ++ S+ +G ++Y+ HG+ + +GD E++ I +
Sbjct: 267 DVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELNGIVNALCATRREPLLIGSTK 326
Query: 341 XXXGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP 376
GH +SG+ +I ++ + PNL+ +P
Sbjct: 327 SNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTP 362
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 94 LHKKKYKILPERIGLIIAGHNTTQNYQYSLYPEFLKKPEYL-------SPRYAIQF---- 142
++++ K+ P ++ + A H YSL P F+++P+YL P AIQF
Sbjct: 32 VYERVMKLDPNQVEFLQAFHEIL----YSLKPLFMEEPKYLPIIETLSEPERAIQFRVCW 87
Query: 143 MDSNQIGIMSEIFNIR 158
+D N + + F ++
Sbjct: 88 LDDNGVQRKNRCFRVQ 103
>pdb|1P6G|S Chain S, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P87|S Chain S, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|S Chain S, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|S Chain S, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|S Chain S, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|S Chain S, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|S Chain S, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|S Chain S, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|V Chain V, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|V Chain V, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|V Chain V, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|V Chain V, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|V Chain V, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|U Chain U, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 91
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 60 SEKKKEFI-LHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
S KK FI LH+ +K +++ L+ W ++ I P IGL IA HN Q+
Sbjct: 3 SLKKGPFIDLHLLKKVEKAVESGDKKPLRTW------SRRSTIFPNMIGLTIAVHNGRQH 56
>pdb|3FIH|S Chain S, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|2WWL|S Chain S, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFO|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFP|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFA|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFB|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFX|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFY|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAQ|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAR|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|2YKR|S Chain S, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|S Chain S, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3J18|S Chain S, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GD1|S Chain S, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|S Chain S, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 79
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 60 SEKKKEFI-LHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
S KK FI LH+ +K +++ L+ W ++ I P IGL IA HN Q+
Sbjct: 2 SLKKGPFIDLHLLKKVEKAVESGDKKPLRTW------SRRSTIFPNMIGLTIAVHNGRQH 55
>pdb|1VS5|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|S Chain S, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1A|L Chain L, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|L Chain L, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|S Chain S, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|S Chain S, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|S Chain S, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|S Chain S, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|S Chain S, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|S Chain S, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|S Chain S, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|S Chain S, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|W Chain W, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|W Chain W, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|S Chain S, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|S Chain S, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|S Chain S, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|S Chain S, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 92
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 60 SEKKKEFI-LHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
S KK FI LH+ +K +++ L+ W ++ I P IGL IA HN Q+
Sbjct: 4 SLKKGPFIDLHLLKKVEKAVESGDKKPLRTW------SRRSTIFPNMIGLTIAVHNGRQH 57
>pdb|2GY9|S Chain S, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|S Chain S, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 87
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 60 SEKKKEFI-LHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
S KK FI LH+ +K +++ L+ W ++ I P IGL IA HN Q+
Sbjct: 3 SLKKGPFIDLHLLKKVEKAVESGDKKPLRTW------SRRSTIFPNMIGLTIAVHNGRQH 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,523,552
Number of Sequences: 62578
Number of extensions: 336943
Number of successful extensions: 788
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 62
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)