RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5222
(415 letters)
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 451 bits (1163), Expect = e-158
Identities = 150/412 (36%), Positives = 244/412 (59%), Gaps = 12/412 (2%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G+VS+IG SF+ +L+ G+ + + A + + L+ +
Sbjct: 9 VGVVSAIGQGRPSFAAALLAGRHAFGV-MRRPGRQVPDDAGAGLASAFIGAELDSLALPE 67
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQNYQ 120
+ + +++ L Q ++ AA +AW ++ L + P+RIGL++ G N Q Q
Sbjct: 68 RLDAK----LLRRASLSAQAALAAAREAWRDAALGP----VDPDRIGLVVGGSNLQQREQ 119
Query: 121 YSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHGMR 180
++ + +P +L P Y + FMD++ +G+ SE F IRGEGF +GGASASG + +I R
Sbjct: 120 ALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGASASGQLAVIQAAR 179
Query: 181 LIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQ 240
L+Q+ VDAC+ + A+ DLS E QA ++GAMG F + P+ CRPFD+ +GFIYG+
Sbjct: 180 LVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDGFIYGE 239
Query: 241 ASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQSGLKKN 300
A A+++E ++ + A+LLG + L A P+P+L E+ V+ + L+++GL
Sbjct: 240 ACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSLEGEMRVIRAALRRAGLGPE 299
Query: 301 MIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVI 360
IDY+N HG+ SPLGD+ E++A+ + +N+TKSLTGH L ++GIVE+IA+++
Sbjct: 300 DIDYVNPHGTGSPLGDETELAALFAS---GLAHAWINATKSLTGHGLSAAGIVELIATLL 356
Query: 361 QMRKKFIHPNLNLESPIDNQANFSGKKSISININNVMSNSFGFSGINSSIIL 412
QMR F+HP+ NL+ PID + + G + S I +S SFGF GIN++++L
Sbjct: 357 QMRAGFLHPSRNLDEPIDERFRWVGSTAESARIRYALSLSFGFGGINTALVL 408
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 291 bits (747), Expect = 2e-95
Identities = 124/422 (29%), Positives = 208/422 (49%), Gaps = 33/422 (7%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G V+ +G + F +L+ G+SGI S F I ++ +F+ ++ L++
Sbjct: 8 LGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDR----- 62
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQNYQ 120
KE ++ F Q ++ AA +A ++ L ++ PERIG++I
Sbjct: 63 ---KE-----LRRMDRFAQFALAAAEEALADAGLDPEELD--PERIGVVIGSGIGGLATI 112
Query: 121 YSLYPEFLKK-PEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHGM 179
Y L+K P +SP + + + G ++ +RG + + A ASG I
Sbjct: 113 EEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAA 172
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
RLI+ D + A ++P+ + F A+ A+ +N + P+K RPFDK +GF+ G
Sbjct: 173 RLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRN--DDPEKASRPFDKDRDGFVLG 230
Query: 240 QASAALLIE-----GNKNIKILNKSYLARLLGGVINL---HATASPEPNLNNEISVMNSV 291
+ + L++E + KI A +LG + H TA P+P+ M +
Sbjct: 231 EGAGVLVLESLEHAKARGAKIY-----AEILGYGASSDAYHITA-PDPDGEGAARAMRAA 284
Query: 292 LKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSG 351
L +GL IDY+N HG+S+PL D E AIK V+ H K+ ++STKS+TGH L ++G
Sbjct: 285 LADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAG 344
Query: 352 IVEIIASVIQMRKKFIHPNLNLESPID-NQANFSGKKSISININNVMSNSFGFSGINSSI 410
VE IA+++ +R + P +NLE P ++ ++ I +SNSFGF G N+S+
Sbjct: 345 AVEAIATLLALRDGVLPPTINLEEPDPECDLDYVPNEAREAPIRYALSNSFGFGGHNASL 404
Query: 411 IL 412
+
Sbjct: 405 VF 406
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 243 bits (622), Expect = 1e-76
Identities = 117/420 (27%), Positives = 197/420 (46%), Gaps = 29/420 (6%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKI-TDL 59
+GIVSS+G + +L+ GKSGI I F+ KI ++
Sbjct: 10 LGIVSSLGNGVEEVWAALLAGKSGIRP----------------ITRFDASGLGVKIAGEI 53
Query: 60 SEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHN--TTQ 117
+ + + F Q +++AA++A ++ L + R+G+ I
Sbjct: 54 KDLDDQIAKKERRFMDRFSQLAVVAAVEALEDAGLDNELNV--DMRVGVAIGSGIGGLED 111
Query: 118 NYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIH 177
+ +SP + + + G ++ +F ++G + A A+G I
Sbjct: 112 IEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGD 171
Query: 178 GMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFI 237
+RLI+ D + A ++P+ I F A+ A+ +N + P+K RPFDK +GF+
Sbjct: 172 AVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRN--DDPEKASRPFDKNRDGFV 229
Query: 238 YGQASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQ 294
G+ + AL++E ++ A ++G H TA P P+ I M + L
Sbjct: 230 IGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITA-PAPDGEGAIRAMRAALAD 288
Query: 295 SGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVE 354
+GL IDY+N HG+S+P DK E AIK V+ H L ++STKSLTGH L ++G VE
Sbjct: 289 AGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVE 348
Query: 355 IIASVIQMRKKFIHPNLNLESPIDNQA--NFSGKKSISININNVMSNSFGFSGINSSIIL 412
I S++ +R I P +NL++P A + ++ + + +SNSFGF G N+S++
Sbjct: 349 AIISLLALRDGIIPPTINLDNPDPEAADLDVVPNEARTGAVRAALSNSFGFGGTNASLVF 408
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 217 bits (556), Expect = 9e-67
Identities = 127/433 (29%), Positives = 210/433 (48%), Gaps = 55/433 (12%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G V+ +G + F +L+ GKSGI S+ I ++ +F+ ++ ++
Sbjct: 8 LGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYID------ 61
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GHNTT 116
KKE A++ FIQ ++ AA +A +S L + ER+G+II G T
Sbjct: 62 --KKE-----ARRMDRFIQYALAAAKEAVEDSGL--DIEEEDAERVGVIIGSGIGGLETI 112
Query: 117 QNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNI 173
+ L K P +SP + +I M + QI I + +G + A A+G
Sbjct: 113 EEQHIVLLE---KGPRRVSPFFIPMSIINMAAGQISIR---YGAKGPNHAVVTACATGTH 166
Query: 174 GIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLA 233
I RLIQ D + A ++P+ I F A+ A+ +N + P+K RPFDK
Sbjct: 167 AIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTRN--DDPEKASRPFDKDR 224
Query: 234 EGFIYGQASAALLIEGNKNIKILNKSYL------ARLLGGVINL-------HATASPEPN 280
+GF+ G+ + L++E A++ ++ H TA P P
Sbjct: 225 DGFVMGEGAGVLVLE----------ELEHAKARGAKIYAEIVGYGMSGDAYHITA-PAPE 273
Query: 281 LNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTK 340
M + LK +G+ +DY+N HG+S+PLGDK E AIK V+ +H KL ++STK
Sbjct: 274 GEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHAYKLAVSSTK 333
Query: 341 SLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDN-QANFSGKKSISININNVMSN 399
S+TGH L ++G +E I +V+ +R + P +NL++P ++ ++ I+ +SN
Sbjct: 334 SMTGHLLGAAGAIEAIFTVLALRDGIVPPTINLDNPDPECDLDYVPNEAREAKIDYALSN 393
Query: 400 SFGFSGINSSIIL 412
SFGF G N+S++
Sbjct: 394 SFGFGGHNASLVF 406
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 202 bits (517), Expect = 4e-61
Identities = 135/430 (31%), Positives = 213/430 (49%), Gaps = 49/430 (11%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G VS +G D+ S +L+ GKSGI + S+ + I ++ +FN + +++
Sbjct: 9 LGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSR----- 63
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GHNTT 116
KE A++ FIQ I AA QA ++ L + +RIG+II G T
Sbjct: 64 ---KE-----ARRMDRFIQYGIAAAKQAVEDAGLEITE--ENADRIGVIIGSGIGGLETI 113
Query: 117 QNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNI 173
+ Q+ E K P +SP + AI M + + I + +G I A A+G
Sbjct: 114 EE-QHITLLE--KGPRRVSPFFVPMAIINMAAGHVSIR---YGAKGPNHSIVTACATGAH 167
Query: 174 GIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLA 233
I RLI D + A ++P+ I F A A+ +N + P++ RPFDK
Sbjct: 168 AIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRN--DDPERASRPFDKDR 225
Query: 234 EGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEI 285
+GF+ G+ + L++E + KI A ++G + H TA P P+
Sbjct: 226 DGFVMGEGAGILVLEELEHAKARGAKIY-----AEVVGYGMTGDAYHMTA-PAPDGEGAA 279
Query: 286 SVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGH 345
M LK +G+ IDY+N HG+S+P GDK E AIK V+ H K+ ++STKS+TGH
Sbjct: 280 RAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGEHAYKVAVSSTKSMTGH 339
Query: 346 CLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININNVMSNSFG 402
L ++G VE I SV+ +R + I P +NL++P D ++ ++ I+ +SNSFG
Sbjct: 340 LLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECD--LDYVPNEARERKIDYALSNSFG 397
Query: 403 FSGINSSIIL 412
F G N+S++
Sbjct: 398 FGGTNASLVF 407
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 172 bits (437), Expect = 3e-49
Identities = 116/429 (27%), Positives = 197/429 (45%), Gaps = 33/429 (7%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGI----DYEINNTQSNFSKNI--IAKINNFNFKNSLN 54
MG VS +G + +F L+ G+SGI D+ + + + + +A+ F
Sbjct: 11 MGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGFD---- 66
Query: 55 KITDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA--- 111
D K+ +K FI ++ AA +A + + ER II
Sbjct: 67 --PDRYLDPKD-----QRKMDRFILFAMAAAKEALAQAGWDPDTLED-RERTATIIGSGV 118
Query: 112 -GHNTTQNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
G +L + P LSP F+ + G +S + +G A A+
Sbjct: 119 GGFPAIAEAVRTLD---SRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAA 175
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
G I RLI++ D + + + + F A A+ F + P++ RPFD
Sbjct: 176 GVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALS-TRFNDAPEQASRPFD 234
Query: 231 KLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEISV 287
+ +GF+ G+ + L+IE ++ LA L+G + H TA PE +
Sbjct: 235 RDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPE-DGEGARRA 293
Query: 288 MNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCL 347
M L+Q+G+ + +LN H +S+P+GD E++AIK+V+ H S L ++STKS TGH L
Sbjct: 294 MLIALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFG-HVSGLAVSSTKSATGHLL 352
Query: 348 YSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA--NFSGKKSISININNVMSNSFGFSG 405
++G VE I +++ +R + P LNLE+P + K+ ++++ +SN FGF G
Sbjct: 353 GAAGGVEAIFTILALRDQIAPPTLNLENPDPAAEGLDVVANKARPMDMDYALSNGFGFGG 412
Query: 406 INSSIILCK 414
+N+SI+ +
Sbjct: 413 VNASILFRR 421
>gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase;
Provisional.
Length = 421
Score = 168 bits (427), Expect = 7e-48
Identities = 111/428 (25%), Positives = 199/428 (46%), Gaps = 24/428 (5%)
Query: 3 IVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSL-NKITDLSE 61
+V+ +G S +LI GKSGI ++ I + N ++ +I +
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIR-KLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVD 59
Query: 62 KKKEF--ILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLII-----AGHN 114
+ + ++ ++ AA +A ++KL + ERIG+ I + +
Sbjct: 60 QSEFDPSDFAPTKRESRATHFAMAAAREALADAKLDILS-EKDQERIGVNIGSGIGSLAD 118
Query: 115 TTQNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQI-GIMSEIFNIRGEGFIIGGASASGNI 173
T +LY K +SP Y I + N G+++ ++G A A+G
Sbjct: 119 LTDE-MKTLY---EKGHSRVSP-YFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAH 173
Query: 174 GIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLA 233
I R I+ D + ++P+ F + A+ K + + P++ RPFDK
Sbjct: 174 CIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTK-YNDDPQRASRPFDKDR 232
Query: 234 EGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVI--NLHATASPEPNLNNEISVMNSV 291
GF+ G+ + L++E ++ A + G + H +P P+ M +
Sbjct: 233 AGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENA 292
Query: 292 LKQSG-LKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNH-FSKLLLNSTKSLTGHCLYS 349
LK + N +DY+N H +S+P+GDKIE+ AIK+V+ + KL ++STK GH L +
Sbjct: 293 LKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGA 352
Query: 350 SGIVEIIASVIQMRKKFIHPNLNLESPIDN-QANFS-GKKSISI-NINNVMSNSFGFSGI 406
+G VE I +++ + ++ I P +NLE+P N GK + + +I+ V+S SFGF G+
Sbjct: 353 AGAVESIVTILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQSIDAVLSTSFGFGGV 412
Query: 407 NSSIILCK 414
N++++ K
Sbjct: 413 NTALLFTK 420
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 156 bits (397), Expect = 1e-43
Identities = 125/425 (29%), Positives = 206/425 (48%), Gaps = 39/425 (9%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G+++S+G + S ++ G+ GI S+F I +I +F+ ++ D
Sbjct: 9 IGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFD----PTEVMDPK 64
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA-GHNTTQNY 119
E KK + FIQ + AA +A ++ ++ + ER G+ A G N
Sbjct: 65 EVKK---------ADRFIQLGLKAAREAMKDAGFLPEE--LDAERFGVSSASGIGGLPNI 113
Query: 120 QYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEI-FNIRGEGFIIGGASASGNIGIIHG 178
+ + F K P +SP + I N +G I ++G A A+G II
Sbjct: 114 EKNSIICFEKGPRKISP-FFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIEA 172
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
++ I D L++ A + + P+ I F A+ A+ +N + PKK RPFDK +GF+
Sbjct: 173 VKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRN--DDPKKASRPFDKDRDGFVM 230
Query: 239 GQASAALLIEGNKNIKILNKSYLARLLG----GVINLHATASPEPNLNNEISVMNSVLKQ 294
G+ + AL++E ++ K A ++G G N H T+ P + M + L+
Sbjct: 231 GEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDAN-HITS---PAPEGPLRAMKAALEM 286
Query: 295 SGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVE 354
+G K IDY+N HG+S+P DK E +A+KE++ + ++STK GHCL ++G +E
Sbjct: 287 AGNPK--IDYINAHGTSTPYNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIE 344
Query: 355 IIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININNVMSNSFGFSGINSS 409
+ S++ MR + P +N E+P +D N + K +N VMSNSFGF G N
Sbjct: 345 AVISIMAMRDGILPPTINQETPDPECDLDYIPNVARKA----ELNVVMSNSFGFGGTNGV 400
Query: 410 IILCK 414
+I K
Sbjct: 401 VIFKK 405
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 153 bits (387), Expect = 2e-41
Identities = 127/426 (29%), Positives = 200/426 (46%), Gaps = 39/426 (9%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ-SNFSKNIIAKINNFNFKNSLNKITD- 58
MG+VS +G D F N+L++G SGI EI S F I +I +F+ TD
Sbjct: 136 MGVVSPLGHDPDVFYNNLLEGVSGIS-EIERFDCSQFPTRIAGEIKSFS--------TDG 186
Query: 59 -----LSEKKKEFILHI--AQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA 111
LS++ +F+L++ A K L + +L K K +L IG +
Sbjct: 187 WVAPKLSKRMDKFMLYLLTAGKKALAD-----GGITEDVMKELDKTKCGVL---IGSAMG 238
Query: 112 GHNTTQNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASG 171
G + +L + K + P +A M S +++ G + I A A+
Sbjct: 239 GMKVFNDAIEALRISYRKMNPFCVP-FATTNMGS---AMLAMDLGWMGPNYSISTACATS 294
Query: 172 NIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDK 231
N I++ I D L + + P+ + F A A+ +N + P K RP+D
Sbjct: 295 NFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRN--DDPTKASRPWDM 352
Query: 232 LAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHA--TASPEPNLNNEISVMN 289
+GF+ G+ + LL+E ++ K + A LGG A P P I +
Sbjct: 353 NRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIE 412
Query: 290 SVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYS 349
L QSG+ K ++Y+N H +S+ GD E A+ + + +L +NSTKS+ GH L +
Sbjct: 413 KALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQN-PELRVNSTKSMIGHLLGA 471
Query: 350 SGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININNVMSNSFGFSGI 406
+G VE IA+V +R ++HPN+NLE+P +D + KK ++I +SNSFGF G
Sbjct: 472 AGAVEAIATVQAIRTGWVHPNINLENPESGVDTKVLVGPKKE-RLDIKVALSNSFGFGGH 530
Query: 407 NSSIIL 412
NSSI+
Sbjct: 531 NSSILF 536
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 146 bits (370), Expect = 7e-40
Identities = 126/434 (29%), Positives = 203/434 (46%), Gaps = 51/434 (11%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
MG++S +G + S +L+ G+SGI + +NFS + +FN + ++K
Sbjct: 11 MGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSK----- 65
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIG-----------LI 109
K+ A+K LFIQ I A +QA +S L + RIG LI
Sbjct: 66 ---KD-----ARKMDLFIQYGIAAGIQALDDSGLEVTEEN--AHRIGVAIGSGIGGLGLI 115
Query: 110 IAGHNTTQNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASA 169
AGH K P +SP + + + G +S + +RG I A
Sbjct: 116 EAGHQALVE----------KGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACT 165
Query: 170 SGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPF 229
+G I H R+I DA + A +P+ + F A A+ +N + P+K RP+
Sbjct: 166 TGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRN--DEPQKASRPW 223
Query: 230 DKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEIS 286
DK +GF+ G + +++E ++ K A L+G ++ H T SP + +
Sbjct: 224 DKDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMT-SPSEDGSGGAL 282
Query: 287 VMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSK-LLLNSTKSLTGH 345
M + ++ +G+ I Y+N HG+S+P GD EI IK SK +L++STKS+TGH
Sbjct: 283 AMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGH 342
Query: 346 CLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININNVMSNS 400
L ++G VE I +V+ + + + P +NL+ P ID + + K ++ + NS
Sbjct: 343 LLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDIDLVPHTARKVE---SMEYAICNS 399
Query: 401 FGFSGINSSIILCK 414
FGF G N S+I K
Sbjct: 400 FGFGGTNGSLIFKK 413
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 134 bits (339), Expect = 3e-35
Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 13/255 (5%)
Query: 167 ASASGNIGIIHGMRLIQNNIVDACLIISAMTDLS--PMEIQAFHAIGAMGGKNFYNFPKK 224
A A+G I R+IQ DA ++++ T+ S + I F A+ K F + P +
Sbjct: 183 ACATGAHSIGDAFRMIQFG--DADVMVAGGTESSIDALSIAGFSRSRALSTK-FNSCPTE 239
Query: 225 TCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLG-GVI-NLHATASPEPNLN 282
RPFD +GF+ G+ + L++E ++ K A + G G+ + H P +
Sbjct: 240 ASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGR 299
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFS--KLLLNSTK 340
+ M L+QSGL N +DY+N H +S+PLGD +E AIK V+ H + L +STK
Sbjct: 300 GAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTK 359
Query: 341 SLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDN--QANFSG-KKSISININNVM 397
TGH L ++G VE I SV+ + P LNLE P D F S ++ I +
Sbjct: 360 GATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERP-DPIFDDGFVPLTASKAMLIRAAL 418
Query: 398 SNSFGFSGINSSIIL 412
SNSFGF G N+S++
Sbjct: 419 SNSFGFGGTNASLLF 433
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 124 bits (312), Expect = 3e-32
Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 10/290 (3%)
Query: 129 KKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHGMRLIQNNIVD 188
+ P+ LSP F+ + G +S + +G A A+G I +R+I+NN D
Sbjct: 52 RGPKRLSPFTVPSFLVNLAAGHVSIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEAD 111
Query: 189 ACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIE 248
L A + + + F A A+ +F + P+K RPFD +GF+ G+ + L+IE
Sbjct: 112 VALCGGAEAVIDTVSLAGFAAARALS-THFNSTPEKASRPFDTARDGFVMGEGAGLLIIE 170
Query: 249 GNKNIKILNKSYLARLLG---GVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYL 305
++ LA ++G H T+ E + M L+Q+G+ + +L
Sbjct: 171 ELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDG-DGAYRAMKIALRQAGITPEQVQHL 229
Query: 306 NTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKK 365
N H +S+P+GD EI+AIK ++ + L + STKS TGH L ++G +E I +V+ +R +
Sbjct: 230 NAHATSTPVGDLGEINAIKHLFGES-NALAITSTKSATGHLLGAAGGLETIFTVLALRDQ 288
Query: 366 FIHPNLNLESPIDNQA---NFSGKKSISININNVMSNSFGFSGINSSIIL 412
+ LNLE+P D A N + ++ +SN FGF+G+N+SI+L
Sbjct: 289 IVPATLNLENP-DPAAKGLNIIAGNAQPHDMTYALSNGFGFAGVNASILL 337
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 118 bits (297), Expect = 2e-29
Identities = 112/431 (25%), Positives = 197/431 (45%), Gaps = 57/431 (13%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+GIVSSIG + SL +G+SGI + + + + L+ T L
Sbjct: 9 LGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVK-------LD-PTGLI 60
Query: 61 EKKKEFIL-------HIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLII-AG 112
++K + ++A + QA ++ L +++ + R GLI +G
Sbjct: 61 DRKVMRFMGDASAYAYLAME-------------QAIADAGLSEEQ--VSNPRTGLIAGSG 105
Query: 113 HNTTQNYQYSL-YPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASG 171
+T+N + + P+ + P + M S ++ F I+G + I A A+
Sbjct: 106 GGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATS 165
Query: 172 NIGIIHGMRLIQNNIVDACLIISA--MTDLSPMEIQAFHAIGAMGGKNFYN-FPKKTCRP 228
I + + IQ D I+ A +L F A+GA+ K YN P+K R
Sbjct: 166 AHCIGNAVEQIQLGKQD---IVFAGGGEELDWEMSCLFDAMGALSTK--YNDTPEKASRA 220
Query: 229 FDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASP----EPNLNNE 284
+D +GF+ +++E ++ A++ ++ AT+ P+
Sbjct: 221 YDANRDGFVIAGGGGVVVVEELEHALARG----AKIYAEIVGYGATSDGYDMVAPSGEGA 276
Query: 285 ISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTG 344
+ M L + + IDY+NTHG+S+P+GD E+ AI+EV+ + +++TKSLTG
Sbjct: 277 VRCMQMAL--ATVD-TPIDYINTHGTSTPVGDVKELGAIREVFGDKSPA--ISATKSLTG 331
Query: 345 HCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA---NFSGKKSISININNVMSNSF 401
H L ++G+ E I S++ M FI P+ N+E +D QA + + + + VMSNSF
Sbjct: 332 HSLGAAGVQEAIYSLLMMEHGFIAPSANIEE-LDPQAAGMPIVTETTDNAELTTVMSNSF 390
Query: 402 GFSGINSSIIL 412
GF G N++++
Sbjct: 391 GFGGTNATLVF 401
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 117 bits (296), Expect = 3e-29
Identities = 77/274 (28%), Positives = 137/274 (50%), Gaps = 23/274 (8%)
Query: 151 MSEIFNIRGEGFIIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAI 210
+++ F RG + A ASG I G+ I+ D L I+ +S + F +
Sbjct: 158 LADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLL 217
Query: 211 GAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVI- 269
A+ +N + P+K +PF K +GF+ + + AL++E ++ A++LG V
Sbjct: 218 SALSTQN--DPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARG----AKILGIVAG 271
Query: 270 ------NLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAI 323
+ H T S P+ + I + + L +GL IDY+N HG+S+P DK+E +
Sbjct: 272 CGEKADSFHRTRS-SPDGSPAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGL 330
Query: 324 KEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----ID 378
V+ + + ++S KS+ GH L ++G VE + S++ ++ + P +N ++P +D
Sbjct: 331 SAVFGERLASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLD 390
Query: 379 NQANFSGKKSISININNVMSNSFGFSGINSSIIL 412
N + + V+SNSFGF G N+S++L
Sbjct: 391 VVPNVARDAR----VTAVLSNSFGFGGQNASLVL 420
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 117 bits (295), Expect = 4e-29
Identities = 74/321 (23%), Positives = 132/321 (41%), Gaps = 50/321 (15%)
Query: 121 YSLYPEFLKKPEYLSPRYAIQFMDSNQI-GIMSEIFNIRGEGFIIGGASASGNIGIIHGM 179
S Y E L + YA + +S F++RG + A +S + +
Sbjct: 122 SSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSSSLVALHLAC 181
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
+ +++ D L+ LSP F G + P CRPFD A+G++ G
Sbjct: 182 QSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-------PDGRCRPFDADADGYVRG 234
Query: 240 QASAALL-------IEGNKNIKILNKSYLARLLGGVIN--LHATASPEPNLNNEISVMNS 290
+ ++ + I A + G +N P+ + +++
Sbjct: 235 EGVGVVVLKRLSDALRDGDRI-------YAVIRGSAVNQDGRTKGITAPSGEAQAALIRR 287
Query: 291 VLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVY---KNHFSKLLLNSTKSLTGHCL 347
++G+ + IDY+ HG+ +PLGD IE+ A+ +V+ ++ LL+ S KS GH
Sbjct: 288 AYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLE 347
Query: 348 YSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQA-------------NFSGKKSISI 391
++G+ +I V+ + I PNL+ E+P ID + +G + +
Sbjct: 348 AAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWPAPAGPRRAGV 407
Query: 392 NINNVMSNSFGFSGINSSIIL 412
+SFGF G N+ +IL
Sbjct: 408 -------SSFGFGGTNAHVIL 421
>gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 418
Score = 115 bits (291), Expect = 1e-28
Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 14/255 (5%)
Query: 167 ASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGA-MGGKNFYNFPKKT 225
A ASG+ I R I D + T + + I F + M N + P
Sbjct: 170 ACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNN--DDPAGA 227
Query: 226 CRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
CRPFDK +GF++G+ A ++IE ++ K + LAR++G I H A P+PN
Sbjct: 228 CRPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVA-PDPNGE 286
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
M ++ +GL ID++N H + + +GD E AI H + + + KS
Sbjct: 287 RAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGGH--RPAVYAPKSA 344
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININNVMSN 399
GH + + G VE I +V+ +R I P LNLE+ ID + + N ++N
Sbjct: 345 LGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEID--LDVVAGEPRPGNYRYAINN 402
Query: 400 SFGFSGINSSIILCK 414
SFGF G N ++ +
Sbjct: 403 SFGFGGHNVALAFGR 417
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 113 bits (283), Expect = 3e-28
Identities = 60/316 (18%), Positives = 126/316 (39%), Gaps = 24/316 (7%)
Query: 103 PERIGLIIAGHNTTQNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGF 162
+G+++ T + P + M G ++ I G +
Sbjct: 35 NPIVGVVVG---TGGGSPRFQVFG-ADAMRAVGPYVVTKAMFPGASGQIATPLGIHGPAY 90
Query: 163 IIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFP 222
+ A A + +QN D L + +PM+ + P
Sbjct: 91 DVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALST-------P 143
Query: 223 KKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATA------S 276
+K R FD A+GF++G + AL++E ++ A + ++ AT +
Sbjct: 144 EKASRTFDAAADGFVFGDGAGALVVEELEHALARG----AHIYAEIVGTAATIDGAGMGA 199
Query: 277 PEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLL 336
P+ L +GL IDYL HG+ +P+GD E+ ++ + + +
Sbjct: 200 FAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGDK--SPAV 257
Query: 337 NSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQANFSGKKSISININNV 396
++TK++TG+ ++ ++ + +V+ + FI P++++E +D ++ +
Sbjct: 258 SATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEE-LDEAGLNIVTETTPRELRTA 316
Query: 397 MSNSFGFSGINSSIIL 412
+ N FG G N++++L
Sbjct: 317 LLNGFGLGGTNATLVL 332
>gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains.
Length = 119
Score = 106 bits (268), Expect = 4e-28
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 261 LARLLGGVINLHATAS---PEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
A + G +N A PN + + + L +GL +DY+ HG+ +PLGD
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 318 IEISAIKEVYKNHFSK--LLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLE 374
IE A+K V+ L + S KS GH ++G+ +I +V+ +R I P LNL+
Sbjct: 61 IEAEALKAVFGPGRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNLD 119
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 106 bits (266), Expect = 2e-25
Identities = 82/433 (18%), Positives = 176/433 (40%), Gaps = 56/433 (12%)
Query: 2 GIVSSIGFDIA---SFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITD 58
G+VS G F +L +G+SGI + +S F + + +I D
Sbjct: 9 GVVSPHGEGCDEVEEFWEALREGRSGIA-PVARLKSRFDRGVAGQIPTG----------D 57
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN 118
+ +++A +A ++ + Y++ P +G+++ +
Sbjct: 58 IPGW---DAKRTGIVDR-TTLLALVATEEALADAGI-TDPYEVHPSEVGVVV--GSGMGG 110
Query: 119 Y---QYSLYPEFLKKPEYLSPRYAIQF-MDSNQIGIMSEIFNIRGEGFIIG--GASASGN 172
+ + Y+SP++ + + + I+ + G I GA A+
Sbjct: 111 LRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNIL----LLSSHGPIKTPVGACATAL 166
Query: 173 IGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKL 232
+ + I++ D ++ + D + F +GA+ P++ RPFD+
Sbjct: 167 EALDLAVEAIRSGKADIV-VVGGVEDPLEEGLSGFANMGALS--TAEEEPEEMSRPFDET 223
Query: 233 AEGFIYGQASAALLIEGNKNIKILNKSYLARLLG----GVINLHAT------ASPEPNLN 282
+GF+ + + L++E ++ LA G G + A+ S
Sbjct: 224 RDGFVEAEGAGVLVLE---------RAELALARGAPIYGRVAGTASTTDGAGRSVPAGGK 274
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
+ + L ++GL + +D ++ HG+S+P D E AI EV + L + + K+L
Sbjct: 275 GIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKAL 334
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDN--QANFSGK-KSISININNVMSN 399
GH ++G +++I ++ + I P NL+ + + G + +++ + + N
Sbjct: 335 FGHSKGAAGALQLIGALQSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVN 394
Query: 400 SFGFSGINSSIIL 412
+FGF G N++++L
Sbjct: 395 AFGFGGSNAALVL 407
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 105 bits (263), Expect = 5e-25
Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 17/252 (6%)
Query: 166 GASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKT 225
A A+G I G+ LIQ + + ++P+ + F +GA+ K
Sbjct: 144 AACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA--------KTG 195
Query: 226 CRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLG-GVIN--LHATASPEPNLN 282
PFD+ EG + G+ A L++E + + ++LG G+ H +A PEP+
Sbjct: 196 AYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSA-PEPDGK 254
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
+ I+ + L +SGL IDY++ HG+++ L D+ E + I+ ++ ++ ++STK
Sbjct: 255 SAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFP---HRVAVSSTKGA 311
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQANFSGKKSISININNVMSNSFG 402
TGH L +SG + + S++ +R + + P + L+ P + NF +++ + NV+ SFG
Sbjct: 312 TGHTLGASGALGVAFSLLALRHQQLPPCVGLQEP-EFDLNFV-RQAQQSPLQNVLCLSFG 369
Query: 403 FSGINSSIILCK 414
F G N++I L K
Sbjct: 370 FGGQNAAIALGK 381
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 104 bits (261), Expect = 1e-24
Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 52/279 (18%)
Query: 155 FNIRGEGFIIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMG 214
+ G + I A +S RL++ + DA ++ + L + + F+++ ++
Sbjct: 147 LGLSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS 205
Query: 215 GKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINL--- 271
+ CRPF +G G+A+A L+E R + L
Sbjct: 206 --------PQPCRPFSANRDGINIGEAAAFFLLE--------------REDDAAVALLGV 243
Query: 272 ------HATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKE 325
H ++P P I M L +GL I Y+N HG+++PL D +E A+
Sbjct: 244 GESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAA 303
Query: 326 VYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP--------- 376
V+ + + +STK LTGH L ++G VE + +R N P
Sbjct: 304 VFGDG---VPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPLYL 360
Query: 377 IDNQANFSGKKSISININNVMSNSFGFSGINSSIILCKK 415
++N ++ I V+SNSF F G N S+I +
Sbjct: 361 VENAQ--------ALAIRYVLSNSFAFGGNNCSLIFGRA 391
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 105 bits (264), Expect = 2e-24
Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 47/305 (15%)
Query: 135 SPRYAIQFMDSNQI-GIMSEIFNIRGEGFIIGGASASGNIGIIHGMRLIQNNIVDACLII 193
P YAI S+ G +S + + G + A +S + + + ++ D L
Sbjct: 140 EPEYAITGNSSSVAAGRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAG 199
Query: 194 SAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALL------- 246
LSP F A G + P C+ FD A+G++ G+ + ++
Sbjct: 200 GVNLVLSPESSYLFSAGGMLS-------PDGRCKAFDADADGYVRGEGAGVVVLKRLSDA 252
Query: 247 IEGNKNIKILNKSYLARLLG-GVINLHATASPE-PNLNNEISVMNSVLKQSGLKKNMIDY 304
I A + G V + PNL + V+ L +G+ + Y
Sbjct: 253 ERDGDRI-------YAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQY 305
Query: 305 LNTHGSSSPLGDKIEISAIKEVYKNHFSKL--LLNSTKSLTGHCLYSSGIVEIIASVIQM 362
+ HG+ +PLGD IE +A+ VY + S KS GH ++GI +I + + +
Sbjct: 306 VEAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTALAL 365
Query: 363 RKKFIHPNLNLESPIDNQANFSGKKSISININNVMS---------------NSFGFSGIN 407
+ +I P L+ ++P S +SFGF G N
Sbjct: 366 KHGYIPPTLHFDTPNPEIDF------DSSPFVVPTEATPWPTGGGPRRAGVSSFGFGGTN 419
Query: 408 SSIIL 412
+ +IL
Sbjct: 420 AHVIL 424
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 405
Score = 97.0 bits (242), Expect = 5e-22
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 7/217 (3%)
Query: 198 DLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILN 257
+L P E F + A +N + P+ T RPFD +G + G+ + L++E ++ K
Sbjct: 193 ELCPTEAAVFDTLFATSTRN--DAPELTPRPFDANRDGLVIGEGAGTLVLEELEHAKARG 250
Query: 258 KSYLARLLGGVINLHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
+ A ++G N +P M LK +GL I Y+N HG+++ GD
Sbjct: 251 ATIYAEIVGFGTNSDGAHVTQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDI 310
Query: 318 IEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPI 377
E A V+ ++ ++S KS GH L + G +E S+ M + + P LNL
Sbjct: 311 AESQATAAVFGA---RMPISSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVD 367
Query: 378 DN--QANFSGKKSISININNVMSNSFGFSGINSSIIL 412
++ ++ I+ VMSN+F F GIN+S+I
Sbjct: 368 PACGALDYIMGEAREIDTEYVMSNNFAFGGINTSLIF 404
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 75.7 bits (187), Expect = 1e-15
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 26/252 (10%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNF--SKNIIAKINNFNFKNSLNKITD 58
MG G F L+ G+ I E S + +I F+F + I+
Sbjct: 9 MGCRFPGGVGPEEFWELLLAGRDAIR-EFPADLSGLYPPSRVAGEIYGFDFDAAFFGISP 67
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLII-AGHNTTQ 117
A+ + ++ AA +A ++ L +R G+ + +G
Sbjct: 68 ----------REAEAMDPQQRLALEAAWEALEDAGL-DPASLRGSDRTGVFVGSGSGDYA 116
Query: 118 NYQ-YSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGII 176
Q + YL+ + + +I +RG + A +S + +
Sbjct: 117 ELQALDSAGGPRRVSPYLTGAWMPSVA-AGRISYR---LGLRGPSVTVDTACSSSLVALH 172
Query: 177 HGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGF 236
+R I+ D L L+P F A GA+ + C+ FD A+GF
Sbjct: 173 AAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPD------GPCKAFDPFADGF 226
Query: 237 IYGQASAALLIE 248
+ G+ A+L++
Sbjct: 227 VRGEGVGAVLLK 238
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 64.0 bits (156), Expect = 2e-11
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 262 ARLLGGVINLHATASPE-----PNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGD 316
A +++ AT + L+ +GL + IDY+ HG+ +P+GD
Sbjct: 120 AHPQAEIVSTAATFDGASMVPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGD 179
Query: 317 KIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP 376
+E++ + +++T +TGH L ++G+ + ++ + +FI P +P
Sbjct: 180 AVELALGLDPDGVR--SPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPP-----TP 232
Query: 377 IDNQANFSGKKSISININNVMSNSFGFSGINSSIIL 412
+ + V+ FG G N++++L
Sbjct: 233 REPRT--------------VLLLGFGLGGTNAAVVL 254
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 50.0 bits (121), Expect = 8e-07
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 23/95 (24%)
Query: 334 LLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---ID-NQANF------ 383
LL+ S KS GH ++G+ +I V+ ++ I P L+ E+P ID ++
Sbjct: 209 LLIGSVKSNIGHLEAAAGVAGLIKVVLALKHGVIPPTLHFETPNPHIDLEESPLRVPTEL 268
Query: 384 ------SGKKSISININNVMSNSFGFSGINSSIIL 412
+ + +SFGF G N+ +IL
Sbjct: 269 TPWPPPGRPRRAGV-------SSFGFGGTNAHVIL 296
>gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for
polyketide chain initiation of aromatic
antibiotic-producing polyketide synthases (PKSs) of
filamentous bacteria. CLFs have been shown to have
decarboxylase activity towards malonyl-acyl carrier
protein (ACP). CLFs are similar to other elongation
ketosynthase domains, but their active site cysteine is
replaced by a conserved glutamine.
Length = 399
Score = 45.0 bits (107), Expect = 4e-05
Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 37/265 (13%)
Query: 129 KKPEYLSPR------YAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHGMRLI 182
K P ++S YA+ ++ QI I +RG ++ A G + RL+
Sbjct: 122 KGPRHVSAYQSFAWFYAV---NTGQISIRH---GMRGPSGVVVAEQAGGLDALAQARRLV 175
Query: 183 QNNIVDACLIISAMTD--LSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQ 240
+ L++S D L P A + G + + P + PFD A G++ G+
Sbjct: 176 RRG---TPLVVSGGVDSALCPWGWVAQLSSGRLSTSDD---PARAYLPFDAAAAGYVPGE 229
Query: 241 ASAALLIEGNKNIKILNKSYLARLLGGVINLHATASP------EPNLNNEISVMNSVLKQ 294
A L++E + AR+ G + AT P P L I L
Sbjct: 230 GGAILVLEDAAA----ARERGARVYGEIAGYAATFDPPPGSGRPPGLARAI---RLALAD 282
Query: 295 SGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSG-IV 353
+GL +D + + P D+ E +A+ V+ + + + K++TG LY+ G +
Sbjct: 283 AGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGPR--GVPVTAPKTMTGR-LYAGGAPL 339
Query: 354 EIIASVIQMRKKFIHPNLNLESPID 378
++ +++ +R I P +N+
Sbjct: 340 DVATALLALRDGVIPPTVNVTDVPP 364
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 38.1 bits (88), Expect = 0.011
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 20/135 (14%)
Query: 295 SGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVY------KNHFSKLLLNSTKSLTGHCLY 348
+G + + HG+ + GD E + V+ K H + L S KS GH
Sbjct: 328 AGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIA---LGSVKSQIGHTKS 384
Query: 349 SSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKS------ISININNVM 397
++G +I +V+ + K + P +N++ P I+N + ++
Sbjct: 385 TAGTAGMIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPWMQREDGTPRRAG 444
Query: 398 SNSFGFSGINSSIIL 412
+SFGF G N ++L
Sbjct: 445 ISSFGFGGTNFHMVL 459
>gnl|CDD|131247 TIGR02192, HtrL_YibB, protein YibB. The protein from this rare,
uncharacterized protein family is designated HtrL or
YibB in E. coli, where its gene is found in a region of
LPS core biosynthesis genes. Homologs are found in
Shigella flexneri, Campylobacter jejuni, and
Caenorhabditis elegans only. The htrL gene may represent
an insertion to the LPS core biosynthesis region, rather
than an LPS biosynthetic protein [Hypothetical proteins,
Conserved].
Length = 270
Score = 37.2 bits (86), Expect = 0.011
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 60 SEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQNY 119
E K+F++ K L +T + KK LP I N NY
Sbjct: 48 DESSKDFVVKTRTKLGLMDKT------------IVIKKTLDDLPLYSAKKII--NDELNY 93
Query: 120 QYSLYPEFLKKPEYLSPRYAI 140
+ + PE +SP Y I
Sbjct: 94 RTIADLDMKTNPESISPEYNI 114
>gnl|CDD|206114 pfam13943, WPP, WPP domain.
Length = 100
Score = 30.0 bits (68), Expect = 0.74
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 306 NTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKS 341
N H S P GD I ++Y SK +L K
Sbjct: 57 NAHASKEPDGDGISAL---QLYSKEISKRMLEVLKR 89
>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family.
CYFIP1/2 (Cytoplasmic fragile X mental retardation
interacting protein) like proteins for a highly
conserved protein family. The function of CYFIPs is
unclear, but CYFIP interaction with fragile X mental
retardation interacting protein (FMRP) involves the
domain of FMRP which also mediating homo- and
heteromerization.
Length = 815
Score = 30.1 bits (68), Expect = 2.4
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 17 SLIKGKSGIDYEINNTQSNFSKNIIAKINNF-----------NFKNSLNKITDLSEK-KK 64
SLI KSG +S N + I F N SL+K DLS+ +
Sbjct: 176 SLINDKSGGKKTGVFLRSILDSNHVKDIEEFLRKSFFFPELLNLSESLDKACDLSQLWFR 235
Query: 65 EFILHIAQKSPLFIQTSI 82
EF L + ++ I+TS+
Sbjct: 236 EFYLDLNKRIQFPIETSL 253
>gnl|CDD|225874 COG3337, COG3337, CRISPR system related protein [Defense
mechanisms].
Length = 134
Score = 28.8 bits (64), Expect = 2.7
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 38 KNIIAKINNFNFKNSLNKITDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKL--- 94
K++ NF + S+ ++ E K K P I+ + + A+Y SK
Sbjct: 2 KSLDQHYANFALQ-SVQELKKSDEAFKTKYGSYCHKFPSMIRLNGLRLTVAFYESKKENI 60
Query: 95 -HKKKYKILPERIGLII 110
H + L E +G+
Sbjct: 61 DHARYLSGLKEALGVSE 77
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain,
Piwi-like subfamily found in eukaryotes. This domain is
found in Piwi and closely related proteins, where it is
believed to perform a crucial role in germline cells,
via RNA silencing. RNA silencing refers to a group of
related gene-silencing mechanisms mediated by short RNA
molecules, including siRNAs, miRNAs, and
heterochromatin-related guide RNAs. The mechanism in
Piwi is believed to be similar to that in Argonaute, the
central component of the RNA-induced silencing complex
(RISC). The PIWI domain is the C-terminal portion of
Argonaute and consists of two subdomains, one of which
provides the 5' anchoring of the guide RNA and the
other, the catalytic site for slicing.
Length = 448
Score = 29.9 bits (68), Expect = 2.9
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 77 FIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQN---YQYSLYPEFLKKPEY 133
+ S+ AL+A+ K+ K LP RI + G Q +Y + P+ K +
Sbjct: 278 SLGKSMKKALKAYK------KENKKLPSRIIIYRDGVGDGQLKKVKEYEV-PQIKKAIKQ 330
Query: 134 LSPRYAIQFM 143
S Y+ +
Sbjct: 331 YSENYSPKLA 340
>gnl|CDD|165343 PHA03050, PHA03050, glutaredoxin; Provisional.
Length = 108
Score = 27.3 bits (60), Expect = 6.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 36 FSKNIIAKINNFNFKNSLNKITDLSEKKKEFILH 69
F +N + +N F+FK +I D+ E K E L
Sbjct: 25 FCRNALDILNKFSFKRGAYEIVDIKEFKPENELR 58
>gnl|CDD|111927 pfam03086, DUF240, MG032/MG096/MG288 family 2. This family
consists entirely of mycoplasmal proteins. Their
function is unknown. Another related family, pfam03072,
also consists entirely of mycoplasmal proteins of the
MG032/MG096/MG288 family. Some proteins are included in
both families, but of course differ in the aligned
residues.
Length = 119
Score = 27.3 bits (61), Expect = 7.0
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 26 DYEINNTQSNFSKNIIAKINNF----NFKNSLNKITD 58
Y NN+ N + A+ NNF + S NK +
Sbjct: 6 VYLGNNSTVNLDFALQAQTNNFSNLEELQESFNKGGN 42
>gnl|CDD|220313 pfam09612, HtrL_YibB, Bacterial protein of unknown function
(HtrL_YibB). The protein from this rare,
uncharacterized protein family is designated HtrL or
YibB in E. coli, where its gene is found in a region of
LPS core biosynthesis genes. Homologues are found in
Shigella flexneri, Campylobacter jejuni, and
Caenorhabditis elegans only. The htrL gene may represent
an insertion to the LPS core biosynthesis region, rather
than an LPS biosynthetic protein.
Length = 279
Score = 28.3 bits (63), Expect = 7.2
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 54 NKITDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGH 113
N I E +FI+ K L +T+II Y + E II
Sbjct: 42 NMIIFTDESSYDFIVKTRTKLGLEDKTTIIIL----------DDLYSYINEIYKRIIDIL 91
Query: 114 N--TTQNYQYSLYPEFLKKPEYLSPRYAI 140
N T N L + LK PE +SP Y
Sbjct: 92 NDETFYNTIADLDMKTLKNPESISPEYNY 120
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 27.9 bits (63), Expect = 9.2
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 25 IDYEINNTQSNFSKNIIAKINNFN--FKNSLNKITDLSEKKKEF 66
ID EI S+ I+ + K KITDL KK E
Sbjct: 41 IDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAEL 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.379
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,880,164
Number of extensions: 2063211
Number of successful extensions: 2146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2041
Number of HSP's successfully gapped: 75
Length of query: 415
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 316
Effective length of database: 6,546,556
Effective search space: 2068711696
Effective search space used: 2068711696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)