RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5222
(415 letters)
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 223 bits (570), Expect = 6e-69
Identities = 117/435 (26%), Positives = 203/435 (46%), Gaps = 55/435 (12%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
+G ++ IG + + L++G++GI I T+ S+ + ++ +F+ L+
Sbjct: 14 LGAITPIGNTLQDYWQGLMEGRNGIG-PI--TRFDASDQACRFGGEVKDFDATQFLD--- 67
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GH 113
+KE A++ F ++ A+ QA ++KL ++ + IG++I G
Sbjct: 68 -----RKE-----AKRMDRFCHFAVCASQQAINDAKLVIN--ELNADEIGVLIGTGIGGL 115
Query: 114 NTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
++ Q ++ + K P SP I M S I +G A A+
Sbjct: 116 KVLED-QQTILLD--KGPSRCSPFMIPMMIANMASGLTAIN---LGAKGPNNCTVTACAA 169
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
G+ I RL+QN A + ++P+ F + A+ +N + P RPFD
Sbjct: 170 GSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRN--DDPLHASRPFD 227
Query: 231 KLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
K +GF+ G+ S L++E + KI ++G + H TA P P+
Sbjct: 228 KDRDGFVMGEGSGILILEELESALARGAKI-----YGEMVGYAMTCDAYHITA-PVPDGR 281
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
+ LK SGLK M+ Y+N HG+S+P D E AIK+ NH + ++STKS+
Sbjct: 282 GATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSM 341
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININNVMSN 399
TGH L SG +E +A+V+ + + + P +NLE+P D ++ +S ++ ++ +SN
Sbjct: 342 TGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECD--LDYVPGQSRALIVDVALSN 399
Query: 400 SFGFSGINSSIILCK 414
SFGF G N ++ K
Sbjct: 400 SFGFGGHNVTLAFKK 414
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 220 bits (563), Expect = 7e-68
Identities = 121/437 (27%), Positives = 207/437 (47%), Gaps = 58/437 (13%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
+G++S +G + S +L+ G+SGI I S ++ + +FN ++ ++
Sbjct: 25 LGMLSPVGNTVESTWKALLAGQSGIS-LI--DHFDTSAYATKFAGLVKDFNCEDIIS--- 78
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GH 113
+KE +K FIQ I+A +QA +S L + RIG I G
Sbjct: 79 -----RKE-----QRKMDAFIQYGIVAGVQAMQDSGLEIT--EENATRIGAAIGSGIGGL 126
Query: 114 NTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
+ ++ P +SP + I M + + IM + +RG I A+ S
Sbjct: 127 GLIEE-NHTSLMN--GGPRKISPFFVPSTIVNMVAGHLTIM---YGLRGPSISIATAATS 180
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
G I H R+I D + A +P+ + F A A+ +N + P+ RP+D
Sbjct: 181 GVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRN--DNPQAASRPWD 238
Query: 231 KLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
K +GF+ G + L++E + KI A L+G ++ H T+ P N
Sbjct: 239 KERDGFVLGDGAGMLVLEEYEHAKKRGAKI-----YAELVGFGMSSDAYHMTS-PPENGA 292
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
M + L+ +G++ + I Y+N HG+S+P GDK E A+K ++ S++L++STKS+
Sbjct: 293 GAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSM 352
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININNVM 397
TGH L ++G VE I S++ +R + + P +NL++P +D + + + S + +
Sbjct: 353 TGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVS---GMEYTL 409
Query: 398 SNSFGFSGINSSIILCK 414
NSFGF G N S+I K
Sbjct: 410 CNSFGFGGTNGSLIFKK 426
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 217 bits (555), Expect = 7e-67
Identities = 122/435 (28%), Positives = 203/435 (46%), Gaps = 56/435 (12%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
+G V+ IG D + + KG +G+ ++ T+ +F I A++ +F+ + L
Sbjct: 11 IGAVTPIGNDAETSWENAKKGVNGVA-KM--TRLNPDDFPVKIAAELKDFDVEKYLE--- 64
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GH 113
KKE A+K F +I +A A +S L R+G+ I G
Sbjct: 65 -----KKE-----ARKMDRFTHYAIASAEMAVQDSGLVID--DSNANRVGVWIGSGIGGM 112
Query: 114 NTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
T + QY ++ + +SP + I M S Q+ I F +G A A+
Sbjct: 113 ETFET-QYEIFLN--RGHRRVSPFFVPMMIPDMGSGQVSIR---FGAKGINSTTVTACAT 166
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
I ++I+ DA + A ++ M + F A A+ N P+ CRPFD
Sbjct: 167 ATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKAL-SLN--PDPETACRPFD 223
Query: 231 KLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
K +GFI G+ + +++E + KI A ++G H TA P PN
Sbjct: 224 KDRDGFIIGEGAGIVILEEYEHAKARGAKI-----YAEIVGYGATGDAYHITA-PAPNGE 277
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
M + +GL + +DY+N HG+S+P D+ E AIK V+ H KL ++STKS+
Sbjct: 278 GAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSM 337
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININNVMSN 399
TGH L +SG +E I +++ +R I P ++L++ D ++ ++ N+N V+SN
Sbjct: 338 TGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCD--LDYVPNEAREANVNVVISN 395
Query: 400 SFGFSGINSSIILCK 414
SFGF G N++++ +
Sbjct: 396 SFGFGGHNATLVFKR 410
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 217 bits (556), Expect = 1e-66
Identities = 115/435 (26%), Positives = 202/435 (46%), Gaps = 56/435 (12%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
MG +S IG D+ + + +KG +GID +I T+ +S ++ ++ NFN ++ ++
Sbjct: 35 MGALSPIGNDVKTTWENALKGVNGID-KI--TRIDTEPYSVHLAGELKNFNIEDHID--- 88
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLI----IAGH 113
KKE A++ F Q +I+AA +A +++L + +RIG+ I G
Sbjct: 89 -----KKE-----ARRMDRFTQYAIVAAREAVKDAQLDIN--ENTADRIGVWIGSGIGGM 136
Query: 114 NTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
T + + + K P +SP + I M + Q+ I +G A A+
Sbjct: 137 ETFEI-AHKQLMD--KGPRRVSPFFVPMLIPDMATGQVSID---LGAKGPNGATVTACAT 190
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
G I +++Q DA + ++ M I F A A+ N + + CRPF
Sbjct: 191 GTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRAL-STN--DDIETACRPFQ 247
Query: 231 KLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
+ +GF+ G+ + L+IE + I A ++G H TA P P
Sbjct: 248 EGRDGFVMGEGAGILVIESLESAQARGANI-----YAEIVGYGTTGDAYHITA-PAPEGE 301
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
M + + +G++ + YLN HG+S+P+GD E+ AIK + L ++STKS+
Sbjct: 302 GGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSM 361
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININNVMSN 399
TGH L ++G +E I S + ++ + P ++ +P D + ++ ++I MSN
Sbjct: 362 TGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECD--LDIVPNEAQDLDITYAMSN 419
Query: 400 SFGFSGINSSIILCK 414
S GF G N+ ++ K
Sbjct: 420 SLGFGGHNAVLVFKK 434
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 216 bits (554), Expect = 2e-66
Identities = 86/439 (19%), Positives = 168/439 (38%), Gaps = 57/439 (12%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
+G+ + G F L G++ I + S + + A+ +
Sbjct: 10 VGVRAPGGNGTRQFWELLTSGRTATR-RI--SFFDPSPYRSQVAAEADFDPVAEGFGP-- 64
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLI----IAGH 113
+E + Q ++ A +A+ S L + P R+G+ +A
Sbjct: 65 ------RE-----LDRMDRASQFAVACAREAFAASGLDPDT--LDPARVGVSLGSAVAAA 111
Query: 114 NTTQNYQYSLYPE----FLKKPEYLSP---RYAIQFMDSNQIGIMSEIFNIRGEGFIIGG 166
+ + +Y L + + +LS Y + + ++ G ++
Sbjct: 112 TSLER-EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWA---VGAEGPVTMVST 167
Query: 167 ASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTC 226
SG + + +R I+ D +A T ++P+ + F AI A +N + P+
Sbjct: 168 GCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARN--DDPEHAS 225
Query: 227 RPFDKLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVINL---HATASPE 278
RPFD +GF+ + +A ++E + +I A + G H T +
Sbjct: 226 RPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIH-----AEISGYATRCNAYHMTG-LK 279
Query: 279 PNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNS 338
+ + L +S IDY+N HGS + D+ E +A K H + ++S
Sbjct: 280 ADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSS 339
Query: 339 TKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININN 395
KS+ GH L + G +EI A V+ + + P NL + D ++ ++ + +
Sbjct: 340 IKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECD--LDYVPLEARERKLRS 397
Query: 396 VMSNSFGFSGINSSIILCK 414
V++ GF G S+++L
Sbjct: 398 VLTVGSGFGGFQSAMVLRD 416
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 214 bits (547), Expect = 1e-65
Identities = 118/437 (27%), Positives = 201/437 (45%), Gaps = 61/437 (13%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
+G ++ IG +F + + GKSG+ I T+ S I A++ + + L+
Sbjct: 9 LGALTPIGVGQEAFHKAQLAGKSGVR-PI--TRFDASALPVRIAAEV-DVDPGAYLD--- 61
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GH 113
+KE ++ F+Q ++IAA A ++ L + + PER+G ++ G
Sbjct: 62 -----RKE-----LRRLDRFVQYALIAAQLALEDAGLKPE--DLDPERVGTLVGTGIGGM 109
Query: 114 NTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
T + Q ++ E + P +SP + I M S I + + G + A A+
Sbjct: 110 ETWEA-QSRVFLE--RGPNRISPFFIPMMIANMASAHIAMR---YGFTGPSSTVVTACAT 163
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
G + +R+IQ D L ++PM I AF + A+ +N P+K RPF
Sbjct: 164 GADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRN--EEPEKASRPFT 221
Query: 231 KLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
+GF+ G+ + L++E + +I A L+G + H T P P
Sbjct: 222 LSRDGFVMGEGAGVLVLEAYEHAKKRGARI-----YAELVGFGRSADAHHITE-PHPEGK 275
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
M LK +G+ + Y+N HG+S+P+GD+ E+ AIK V+ +H +L+++STKS+
Sbjct: 276 GAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSM 335
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININNVM 397
GH L ++G VE IA+V + I P +NLE P +D ++ +
Sbjct: 336 IGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVPE-----PREAKVDYAL 390
Query: 398 SNSFGFSGINSSIILCK 414
SNSF F G N+ + +
Sbjct: 391 SNSFAFGGHNAVLAFKR 407
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 211 bits (540), Expect = 1e-64
Identities = 85/439 (19%), Positives = 165/439 (37%), Gaps = 66/439 (15%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY-EINNTQSNFSKNIIAKINNFNFKNSLNKITDL 59
MG V+++G +L G++ + + + + A + F +
Sbjct: 13 MGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPR---- 68
Query: 60 SEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLI----IAGHNT 115
K+ + ++ A+ A ++ + I R+G+
Sbjct: 69 ----KK-----TRSMGRVSMYAVRASELALADAGFAGDE-SISDGRMGVAYGSSSGSVEP 118
Query: 116 TQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGN 172
+ ++ ++ + + + + ++++G A ASG+
Sbjct: 119 IRA-FGTMLES--GSMTDVTSNSYVQMMPHTTAVNVSLF---WDLKGRIVPTSSACASGS 172
Query: 173 IGIIHGMRLIQNNIVDACLIISAMTD-LSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDK 231
I + I +++ + LS + F + A +N + P T RPFD
Sbjct: 173 QAIGYAYENIAMGKQTL--MLAGGAEELSGPAVAVFDTLYATSTRN--DEPHLTPRPFDA 228
Query: 232 LAEGFIYGQASAALLIEGNKNIKILNKSY---LAR-------LLGGVIN---LHATASPE 278
+G + G+ +A L++E Y AR ++G N H T
Sbjct: 229 KRDGLVVGEGAATLVLE----------EYEHAKARGATIHAEIVGFGCNSDGAHMTQ--- 275
Query: 279 PNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNS 338
P + M L+ + L N I Y+N HG+S+ GD E A + + ++S
Sbjct: 276 PTASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGER---MPISS 332
Query: 339 TKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA---NFSGKKSISININN 395
KS GH L + G +E ++ M++ + P LNL D ++ ++ +I+
Sbjct: 333 LKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEV-DPACAPLDYIRGEARAIDAEY 391
Query: 396 VMSNSFGFSGINSSIILCK 414
VMSN+F F GIN+S+I +
Sbjct: 392 VMSNNFAFGGINTSLIFRR 410
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 209 bits (534), Expect = 2e-63
Identities = 113/435 (25%), Positives = 181/435 (41%), Gaps = 59/435 (13%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
G+ S IG F NSL GK GI I T+ S+F + A+I +F F K
Sbjct: 30 YGVTSPIGNTPEEFWNSLATGKIGIG-GI--TKFDHSDFDVHNAAEIQDFPFDKYFVK-- 84
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GH 113
K+ + + ++ AA +A ++ L + + +R G+I+A G
Sbjct: 85 ------KD-----TNRFDNYSLYALYAAQEAVNHANLDVEA--LNRDRFGVIVASGIGGI 131
Query: 114 NTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
++ Q E K P+ + P A+ M S + + F G I A +S
Sbjct: 132 KEIED-QVLRLHE--KGPKRVKPMTLPKALPNMASGNVAMR---FGANGVCKSINTACSS 185
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
N I R I+ D L+ ++P I F A+ A+ P + PFD
Sbjct: 186 SNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TT--EDPTRASIPFD 242
Query: 231 KLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
K GF+ G+ S L++E + IL A ++G H T+ P P
Sbjct: 243 KDRNGFVMGEGSGMLVLESLEHAEKRGATIL-----AEVVGYGNTCDAYHMTS-PHPEGQ 296
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
I + L+++ + + Y+N HG+S+P +K E AI V + ++STKS
Sbjct: 297 GAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKE---VPVSSTKSF 353
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKSISININNVMSN 399
TGH L ++G VE I ++ MR F+ I+ AN + + I +SN
Sbjct: 354 TGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIE--ANVVYGQGLEKEIPYAISN 411
Query: 400 SFGFSGINSSIILCK 414
+FGF G N+ + +
Sbjct: 412 TFGFGGHNAVLAFKR 426
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 208 bits (532), Expect = 2e-63
Identities = 77/442 (17%), Positives = 163/442 (36%), Gaps = 75/442 (16%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQ---SNFSKNIIAKINNFNFKNSLNKIT 57
+G+V+ G +A + ++++ G+ G+ + T+ S + + +I++F+ + +
Sbjct: 16 VGVVAPNGLGLAPYWSAVLDGRHGLG-PV--TRFDVSRYPATLAGQIDDFHAPDHIPG-- 70
Query: 58 DLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GH 113
+ ++ + ++ AA A ++K + + +G++ A G
Sbjct: 71 ------RL-----LPQTDPSTRLALTAADWALQDAKADPES--LTDYDMGVVTANACGGF 117
Query: 114 NTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASAS 170
+ T ++ + P+ +S +++ QI I +RG + A
Sbjct: 118 DFTHR-EFRKLWS--EGPKSVSVYESFAWFYAVNTGQISIR---HGMRGPSSALVAEQAG 171
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTD--LSPMEIQAFHAIGAMGGKNFYNFPKKTCRP 228
G + H R I+ L++S D L P + A G + + P + P
Sbjct: 172 GLDALGHARRTIRR---GTPLVVSGGVDSALDPWGWVSQIASGRI---STATDPDRAYLP 225
Query: 229 FDKLAEGFIYGQASAALLIE--------GNKNIKILNKSYLARLLGGVINL---HATASP 277
FD+ A G++ G+ A L++E G + L G + P
Sbjct: 226 FDERAAGYVPGEGGAILVLEDSAAAEARGRHDA-------YGELAGCASTFDPAPGSGRP 278
Query: 278 EPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLN 337
+ L +G +D + G+ P D E AI V+ + +
Sbjct: 279 A----GLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGRE--GVPVT 332
Query: 338 STKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISIN 392
K+ TG G ++++ +++ +R+ I P + S ID + S
Sbjct: 333 VPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVLG----EPRSTA 388
Query: 393 INNVMSNSFGFSGINSSIILCK 414
+ + G G NS+ +L +
Sbjct: 389 PRTALVLARGRWGFNSAAVLRR 410
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 204 bits (521), Expect = 1e-61
Identities = 111/429 (25%), Positives = 186/429 (43%), Gaps = 48/429 (11%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
MGIVSSIG + + SL + KSGI + F + + + I L
Sbjct: 30 MGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQV-HGAPDID-------IESLV 81
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA---GHNTTQ 117
+++ + + IA QA ++ L +++ + ER G+I+ T
Sbjct: 82 DRR------AMRFHGRGTAWNHIAMDQAIADAGLTEEE--VSNERTGIIMGSGGPSTRTI 133
Query: 118 NYQYSLYPEFLKKPEYLSPRYAIQFMDSNQI-GIMSEIFNIRGEGFIIGGASASGNIGII 176
+ E K P+ + P +A+ S+ ++ F I+G + I A A+ N I
Sbjct: 134 VDSADITRE--KGPKRVGP-FAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIG 190
Query: 177 HGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYN-FPKKTCRPFDKLAEG 235
+ +IQ D + + F A+GAM K YN P R +DK +G
Sbjct: 191 NAYEMIQYGKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSK--YNDTPSTASRAYDKNRDG 247
Query: 236 FIYGQASAALLIEG-----NKNIKILNKSYLARLLG-GVIN--LHATASPEPNLNNEISV 287
F+ + L++E + KI ++G G + A P+ I
Sbjct: 248 FVIAGGAGVLVLEDLETALARGAKIY-----GEIVGYGATSDGYDMVA---PSGEGAIRC 299
Query: 288 MNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCL 347
M L K IDY+N H +S+P GD EI AI++++ + +TKSLTGH L
Sbjct: 300 MKMALSTVTSK---IDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSL 356
Query: 348 YSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA--NFSGKKSISININNVMSNSFGFSG 405
++G+ E I S++ M+ FI + ++E A K+ ++ +N V+SNSFGF G
Sbjct: 357 GATGVQEAIYSLLMMQNNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGG 416
Query: 406 INSSIILCK 414
N++++ +
Sbjct: 417 TNATLVFQR 425
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 202 bits (516), Expect = 4e-61
Identities = 100/438 (22%), Positives = 185/438 (42%), Gaps = 67/438 (15%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+GIVSSIG + SL +G+SGI + S ++ + + T L
Sbjct: 9 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LD-------TTGLI 60
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLI----IAGHNTT 116
++K + + + ++ QA ++ L + Y R+GLI
Sbjct: 61 DRK------VVRFMSDASIYAFLSMEQAIADAGLSPEAY-QNNPRVGLIAGSGGGSPRFQ 113
Query: 117 QNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQI-GIMSEIFNIRGEGFIIGGASASGNIGI 175
++ + + + P Y + ++ + ++ F I G + I A A+ I
Sbjct: 114 VFGADAMRGP--RGLKAVGP-YVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCI 170
Query: 176 IHGMRLIQNNIVDACLII-----SAMTDLSPMEIQAFHAIGAMGGKNFYN-FPKKTCRPF 229
+ + IQ D + +++ F A+GA+ K YN P+K R +
Sbjct: 171 GNAVEQIQLGKQDI--VFAGGGEELCWEMACE----FDAMGALSTK--YNDTPEKASRTY 222
Query: 230 DKLAEGFIYGQASAALLIE-----GNKNIKILNKSYLARLLGGVIN---LHATASPEPNL 281
D +GF+ +++E + I A ++G A P+
Sbjct: 223 DAHRDGFVIAGGGGMVVVEELEHALARGAHIY-----AEIVGYGATSDGADMVA---PSG 274
Query: 282 NNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKS 341
+ M + IDYLN+HG+S+P+GD E++AI+EV+ + +++TK+
Sbjct: 275 EGAVRCMKMAMHGVDTP---IDYLNSHGTSTPVGDVKELAAIREVFGDK--SPAISATKA 329
Query: 342 LTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININNV 396
+TGH L ++G+ E I S++ + FI P++N+E N ++ + V
Sbjct: 330 MTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVT----ETTDRELTTV 385
Query: 397 MSNSFGFSGINSSIILCK 414
MSNSFGF G N+++++ K
Sbjct: 386 MSNSFGFGGTNATLVMRK 403
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 201 bits (515), Expect = 8e-61
Identities = 105/437 (24%), Positives = 179/437 (40%), Gaps = 63/437 (14%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDY--EINNTQSNFSKNIIAKINNFNFKNSLNKITD 58
+ +SI DI S L+ G+SGI + T+ + + I + + +
Sbjct: 19 VTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDP--------VDS 70
Query: 59 LSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GHN 114
+ ++ + + Q W ++ + + P+R +++ G
Sbjct: 71 HMGRLD------MRRMSYVQRMGKLLGGQLWESAGSPE----VDPDRFAVVVGTGLGGAE 120
Query: 115 TTQNYQYSLYPEFLKKPEYLSPRYAIQFMDSN----QIGIMSEIFNIRGEGFIIGGASAS 170
Y L P +SP A+Q + N IG+ R A +S
Sbjct: 121 RIVE-SYDLMNA--GGPRKVSP-LAVQMIMPNGAAAVIGLQ---LGARAGVMTPVSACSS 173
Query: 171 GNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFD 230
G+ I H R I D + + + I AF + AM +N + P++ RPFD
Sbjct: 174 GSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRN--DEPERASRPFD 231
Query: 231 KLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLN 282
K +GF++G+A A +LIE + K L ARLLG I H A P +
Sbjct: 232 KDRDGFVFGEAGALMLIETEEHAKARGAKPL-----ARLLGAGITSDAFHMVA-PAADGV 285
Query: 283 NEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSL 342
M L+ +GL ID++N HG+++P+GD E +AI+ + + + KS
Sbjct: 286 RAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQ---AAVYAPKSA 342
Query: 343 TGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININNVM 397
GH + + G +E + +V+ +R I P LN E+P +D A + + +
Sbjct: 343 LGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAG----EPRYGDYRYAV 398
Query: 398 SNSFGFSGINSSIILCK 414
+NSFGF G N ++ +
Sbjct: 399 NNSFGFGGHNVALAFGR 415
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 202 bits (515), Expect = 2e-60
Identities = 102/433 (23%), Positives = 178/433 (41%), Gaps = 41/433 (9%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLN-KITDL 59
+GIVS +G LI G SG+ ++ S + + +
Sbjct: 31 IGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGGFDPERS 90
Query: 60 SEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GHNT 115
K+ +K FIQ +++AA +A + + + ER ++A G
Sbjct: 91 VPHKE------LRKMDRFIQMAMVAADEALAEAGWAPEA-EQQRERTATVVASGIGGFPG 143
Query: 116 TQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGN 172
+ + LSP + + + QI I RG A A+
Sbjct: 144 LAE-AVRIGET--RGVRRLSPFTIPFFLSNLAAGQISIK---HRFRGPLGCPVTACAASV 197
Query: 173 IGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKL 232
I MR+I+ D L A + + F A A+ F P + RPFD+
Sbjct: 198 QAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALS-TGFSEEPVRASRPFDRD 256
Query: 233 AEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNE 284
+GF+ G+ +A +++E + + + A ++G H TA + +
Sbjct: 257 RDGFVMGEGAAMVVVESLDHALARGARPI-----AEIIGYGTTADAYHMTA-GPDDGSGA 310
Query: 285 ISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTG 344
+ M L+ + +DY+N H +S+P+GD EI A+K V+ + ++STKS TG
Sbjct: 311 MRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVG-AGPAISSTKSATG 369
Query: 345 HCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA---NFSGKKSISININNVMSNSF 401
H L ++G +E S++ +R + LNLE P D A + G + + + +SN F
Sbjct: 370 HLLGAAGAIEAAFSILALRDGVLPGTLNLEHP-DPAADGLDLIGPAARHVPVEIALSNGF 428
Query: 402 GFSGINSSIILCK 414
GF G+N+S++ +
Sbjct: 429 GFGGVNASVLFRR 441
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 201 bits (514), Expect = 2e-60
Identities = 93/440 (21%), Positives = 168/440 (38%), Gaps = 67/440 (15%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+ + +++ D + L+ +SGI +++ + +
Sbjct: 35 IAMTTALATDAETTWKLLLDRQSGIR----------------TLDDPFVEEFDLPVRIGG 78
Query: 61 EKKKEFILHI----AQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----G 112
+EF + ++ + S + + + W N+ ++ R+ + I
Sbjct: 79 HLLEEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSP----EVDTNRLMVSIGTGLGS 134
Query: 113 HNTTQNYQYSLYPEFLKKPEYLSPRYAIQFMDSN----QIGIMSEIFNIRGEGFIIGGAS 168
Y + + +SP +Q N +G+ + + A
Sbjct: 135 AEELVF-SYDDMRA--RGMKAVSP-LTVQKYMPNGAAAAVGLE---RHAKAGVMTPVSAC 187
Query: 169 ASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAI-GAMGGKNFYNFPKKTCR 227
ASG I + I DA + T + + I F + M N + P CR
Sbjct: 188 ASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNN--DDPAGACR 245
Query: 228 PFDKLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEP 279
PFD+ +GF++G+ A LLIE + I LAR++G I H A P+P
Sbjct: 246 PFDRDRDGFVFGEGGALLLIETEEHAKARGANI-----LARIMGASITSDGFHMVA-PDP 299
Query: 280 NLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNST 339
N + ++ +GL ID++N H + + +GD E AI + + + +
Sbjct: 300 NGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGN--RPAVYAP 357
Query: 340 KSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININ 394
KS GH + + G VE I +V+ +R + I P LNL + +D A + N
Sbjct: 358 KSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAG----EPRPGNYR 413
Query: 395 NVMSNSFGFSGINSSIILCK 414
++NSFGF G N +I +
Sbjct: 414 YAINNSFGFGGHNVAIAFGR 433
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 200 bits (511), Expect = 5e-60
Identities = 99/434 (22%), Positives = 181/434 (41%), Gaps = 44/434 (10%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G+V+ +G + LI G+SGI + + ++ A + + + N +
Sbjct: 28 IGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFN-EQNFV 86
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA----GHNTT 116
K + +I AA A +S H + + G+ I
Sbjct: 87 SKSD------IKSMSSPTIMAIGAAELAMKDSGWHPQS-EADQVATGVAIGMGMIPLEVV 139
Query: 117 QNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNI 173
+ K +SP + + M + Q+ I + ++G + A +G
Sbjct: 140 SE-TALNFQT--KGYNKVSPFFVPKILVNMAAGQVSIR---YKLKGPNHAVSTACTTGAH 193
Query: 174 GIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLA 233
+ R I + D + + +SP+ + F A+ N + PK CRPF
Sbjct: 194 AVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TN--SDPKLACRPFHPKR 250
Query: 234 EGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPEPNLNNEI 285
+GF+ G+ +A L++E + +I A +LG ++ H TA P+P +
Sbjct: 251 DGFVMGEGAAVLVLEEYEHAVQRRARIY-----AEVLGYGLSGDAGHITA-PDPEGEGAL 304
Query: 286 SVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGH 345
M + LK +G++ I Y+N H +S+PLGD E AIK ++K+H L ++STK TGH
Sbjct: 305 RCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGH 364
Query: 346 CLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQANFSGKKSISININNVMSNS 400
L ++G VE + + + + P LNL+ ++ + + ++NS
Sbjct: 365 LLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTE-KRFIGLTNS 423
Query: 401 FGFSGINSSIILCK 414
FGF G N+++ +
Sbjct: 424 FGFGGTNATLCIAG 437
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 199 bits (508), Expect = 1e-59
Identities = 105/438 (23%), Positives = 187/438 (42%), Gaps = 53/438 (12%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGID----YEINNTQSNFS---KNIIAKINNFNFKNSL 53
+G+VS + + L+ G+SG +E+++ + FN +
Sbjct: 17 LGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGTFNPDLHM 76
Query: 54 NKITDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIA-- 111
+ KE +K FI ++ AA QA ++ H + R G++I
Sbjct: 77 DP--------KE-----QRKVDPFIVYAVGAADQALDDAGWHPEN-DEDQVRTGVLIGSG 122
Query: 112 --GHNTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRGEGFIIGG 166
G + K P +SP + + + S + I +RG +
Sbjct: 123 IGGIEGIVE-AGYTLRD--KGPRRISPFFIPGRLINLASGHVSIK---HKLRGPNHSVVT 176
Query: 167 ASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTC 226
A A+G I RLI D + + +S + + F A A+ + + P
Sbjct: 177 ACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTE-RNDDPTAAS 235
Query: 227 RPFDKLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---LHATASPE 278
RP+D+ +GF+ G+ + +++E + KI A ++G ++ H TA P
Sbjct: 236 RPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIY-----AEVIGYGMSGDAFHITA-PT 289
Query: 279 PNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNS 338
+ M + LK++G+ + IDY+N HG+S+ D IE+ A++ V +K+ ++S
Sbjct: 290 ESGEGAQRCMVAALKRAGIVPDEIDYINAHGTSTM-ADTIELGAVERVVGEAAAKISMSS 348
Query: 339 TKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQA--NFSGKKSISININNV 396
TKS GH L ++G E + S + +R LNL++P Q + K I+
Sbjct: 349 TKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNP-AAQTRIDLVPHKPRERKIDVA 407
Query: 397 MSNSFGFSGINSSIILCK 414
+SNSFGF G N+S++L +
Sbjct: 408 LSNSFGFGGTNASLVLRR 425
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 196 bits (501), Expect = 9e-59
Identities = 111/448 (24%), Positives = 185/448 (41%), Gaps = 59/448 (13%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGID--------------YEINNTQSNFSKNIIAKINN 46
+G+V+ +G + + LI G+ GI T S + A +
Sbjct: 8 LGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPY 67
Query: 47 FNFKNSLNKITDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERI 106
+ ++ L+ K FI ++ AA +A +++ + + ER
Sbjct: 68 GSNPGEFDEALWLNSKAVA----------NFIGYAVCAADEALRDAEWLPTE-EEEKERT 116
Query: 107 GLIIA----GHNTTQNYQYSLYPEFLKKPEYLSPRY---AIQFMDSNQIGIMSEIFNIRG 159
G+ I L E K+ LSP + + M S + + + +G
Sbjct: 117 GVSIGGGIGSICDIVE-AAQLICE--KRLRRLSPFFIPKILVNMASGHVSMK---YGFQG 170
Query: 160 EGFIIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFY 219
A A+G I R+IQ D + + + + + F A+ K F
Sbjct: 171 PNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTK-FN 229
Query: 220 NFPKKTCRPFDKLAEGFIYGQASAALLIEG-----NKNIKILNKSYLARLLGGVIN---L 271
+ P++ RPFD +GF+ G+ S +++E + KI A L G ++
Sbjct: 230 SSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIY-----AELCGYGMSGDAH 284
Query: 272 HATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHF 331
H T P + + M L+QSGL N IDY+N H +S+P+GD +E AIK V+ H
Sbjct: 285 HITQ-PPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHA 343
Query: 332 SKLLL--NSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQAN---FSGK 386
+ L +STK TGH L ++G VE I S++ + LN+++P D +
Sbjct: 344 TSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNP-DPIFDKRFMPLT 402
Query: 387 KSISININNVMSNSFGFSGINSSIILCK 414
S + + MSNSFGF G N+S++
Sbjct: 403 TSKKMLVRTAMSNSFGFGGTNASLLFAS 430
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 157 bits (397), Expect = 9e-42
Identities = 68/530 (12%), Positives = 133/530 (25%), Gaps = 143/530 (26%)
Query: 9 FDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKI-NNFNFKNSLNKITDLSEKKKEFI 67
F+I ++ + G I F + + +I ++ +
Sbjct: 1130 FEIPETGQYTVRLRKGATLLIPKA-LQFDRLVAGQIPTGWD-------ARRYGVPEDI-- 1179
Query: 68 LHIAQKSPLFIQTSIIAALQAWYNSKLHKKK---YKILPERIGLIIA----GHNTTQNYQ 120
Q+ +++ +A +S + + +G I G + +
Sbjct: 1180 ---IQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMY 1236
Query: 121 YSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHGMR 180
Y + + + L + + M + ++ + G GA A+ + G
Sbjct: 1237 KDRYLDKPVQKDILQESF-VNTMAAWVNMLL---LSSTGPIKTPVGACATAVESLDVGYD 1292
Query: 181 LIQNNIVDACL-----IISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDK---- 231
I CL + A + P + RP
Sbjct: 1293 TIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARG--REPGEMSRPTSTTRNG 1350
Query: 232 --LAEG-----------------FIY----------------------GQASAALLIEGN 250
++G IY G + A GN
Sbjct: 1351 FMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGN 1410
Query: 251 KNIKILNKSYLARLL---GGVINLHATASPEPNLNNE----------------------- 284
+L+ Y R L I + L E
Sbjct: 1411 FPSPLLDIKYRRRQLELRRQQIKQWKESEYL-YLQEEVAAIKSQRSEEDGPFDETAYLRE 1469
Query: 285 ------------------------------ISVMNSVLKQSGLKKNMIDYLNTHGSSSPL 314
I+ + L GL + + + HG+S+
Sbjct: 1470 RTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRGALATWGLTIDDLGVASFHGTSTVA 1529
Query: 315 GDKIEISAIKEVYKNHF----SKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPN 370
DK E I + K+ + +L K LTGH ++G + + + + N
Sbjct: 1530 NDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGN 1589
Query: 371 LNLESP-----IDNQANFSGKKSISININNVMSNSFGFSGINSSIILCKK 415
N ++ + + + + I SFGF + I
Sbjct: 1590 RNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQAIGVHP 1639
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 140 bits (354), Expect = 3e-36
Identities = 58/455 (12%), Positives = 125/455 (27%), Gaps = 79/455 (17%)
Query: 9 FDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKI-NNFNFKNSLNKITDLSEKKKEFI 67
F+I +K G I F + + +I +N
Sbjct: 956 FEIPETGEYSVKLLKGATLYIPKA-LRFDRLVAGQIPTGWN-------AKTYGISDDI-- 1005
Query: 68 LHIAQKSPLFIQTSIIAALQAWYNSKLHKKKY---KILPERIGLIIA----GHNTTQNYQ 120
+ +++ ++A+ S + + +G G + +
Sbjct: 1006 ---ISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRG-M 1061
Query: 121 YSLYPEFLKKPE---YLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIH 177
+ F +P L + I M + ++ + G GA A+ +
Sbjct: 1062 FKDR--FKDEPVQNDILQESF-INTMSAWVNMLL---ISSSGPIKTPVGACATSVESVDI 1115
Query: 178 GMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKN----FYNFPKKTCRPFDKLA 233
G+ I + C++ D F + A P + RP
Sbjct: 1116 GVETILSGKARICIVGGY-DDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTR 1174
Query: 234 EGFIYGQASAALLIEGNKNIKILNKSYLARLLG-----------------GVI-----NL 271
GF+ Q + +I + + G++ +
Sbjct: 1175 NGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHH 1234
Query: 272 HATASPEPNLNNEISVMNSVLKQSGLKKNM---IDYLNTHGSSSPLGDKIEISAIKEVYK 328
+ PNLN + V +++ +K + ++ L P D+ E +
Sbjct: 1235 SSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREI 1294
Query: 329 NHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDNQANFSGKKS 388
++ ++ L + + G+ Y + +R L ++ +
Sbjct: 1295 HNEAESQLRAAQQQWGNDFYKRD-----PRIAPLRGALATYGLTID-----DLGVASFHG 1344
Query: 389 ISININNV--------MSNSFGFSGINSSIILCKK 415
S N+ M G S N I + +K
Sbjct: 1345 TSTKANDKNESATINEMMKHLGRSEGNPVIGVFQK 1379
Score = 138 bits (349), Expect = 1e-35
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 9/151 (5%)
Query: 271 LHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVY--- 327
+ + I+ + L GL + + + HG+S+ DK E + I E+
Sbjct: 1306 QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHL 1365
Query: 328 -KNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQA 381
++ + ++ K LTGH ++G + ++ + I N N ++
Sbjct: 1366 GRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYV 1425
Query: 382 NFSGKKSISININNVMSNSFGFSGINSSIIL 412
+ K + + V SFGF I+
Sbjct: 1426 LYPSKTLKTDGVRAVSITSFGFGQKGGQAIV 1456
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 117 bits (294), Expect = 2e-28
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 9/151 (5%)
Query: 271 LHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVY--- 327
+ + I+ + L GL + + + HG+S+ DK E + I E+
Sbjct: 1505 QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHL 1564
Query: 328 -KNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-----IDNQA 381
++ + ++ K LTGH ++G + ++ + I N N ++
Sbjct: 1565 GRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYV 1624
Query: 382 NFSGKKSISININNVMSNSFGFSGINSSIIL 412
+ K + + V SFGF I+
Sbjct: 1625 LYPSKTLKTDGVRAVSITSFGFGQKGGQAIV 1655
Score = 87.7 bits (217), Expect = 1e-18
Identities = 45/383 (11%), Positives = 103/383 (26%), Gaps = 59/383 (15%)
Query: 9 FDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKI-NNFNFKNSLNKITDLSEKKKEFI 67
F+I +K G I F + + +I +N
Sbjct: 1155 FEIPETGEYSVKLLKGATLYIPKA-LRFDRLVAGQIPTGWN-------AKTYGISDDI-- 1204
Query: 68 LHIAQKSPLFIQTSIIAALQAWYNSKLHKKKY---KILPERIGLIIA----GHNTTQNYQ 120
+ +++ ++A+ S + + +G G + +
Sbjct: 1205 ---ISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRG-- 1259
Query: 121 YSLYPEFLKKPEYLSPRYAIQFMDSNQI--GIMSEIFNIRGEGFIIGGASASGNIGIIHG 178
++ + K + +Q N + + + + G GA A+ + G
Sbjct: 1260 --MFKDRFKDEPVQND--ILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIG 1315
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKN----FYNFPKKTCRPFDKLAE 234
+ I + C++ D F + A P + RP
Sbjct: 1316 VETILSGKARICIVGGY-DDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRN 1374
Query: 235 GFIYGQASAALLIEGNKNIKILNKSYLARLLGGVIN----------------------LH 272
GF+ Q + +I + +
Sbjct: 1375 GFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHS 1434
Query: 273 ATASPEPNLNNEISVMNSVLKQSGLKKNM---IDYLNTHGSSSPLGDKIEISAIKEVYKN 329
+ PNLN + V +++ +K + ++ L P D+ E + +
Sbjct: 1435 SVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIH 1494
Query: 330 HFSKLLLNSTKSLTGHCLYSSGI 352
+ ++ L + + G+ Y
Sbjct: 1495 NEAESQLRAAQQQWGNDFYKRDP 1517
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 104 bits (262), Expect = 3e-24
Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 33/280 (11%)
Query: 149 GIMSEIFNIRGEGFIIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFH 208
+S F+ +G I A +S + + + I+ A ++ L P F
Sbjct: 142 NRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFM 201
Query: 209 AIGAMGGKNFYNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKNIK-ILNKSYLARLLGG 267
+G + TCR FD G+ +A A+L+ + + A +L
Sbjct: 202 KLGMLS-------QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLARRVY-----ATILNA 249
Query: 268 VIN--------LHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIE 319
N + T P+ + + ++ S+ +G ++Y+ HG+ + +GD E
Sbjct: 250 GTNTDGSKEQGV--TF---PSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQE 304
Query: 320 ISAIKEVY-KNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP-- 376
++ I LL+ STKS GH +SG+ +I ++ + PNL+ +P
Sbjct: 305 LNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNP 364
Query: 377 -IDNQANFSGK---KSISININNVMSNSFGFSGINSSIIL 412
I + + + + I NV NSFGF G N +IL
Sbjct: 365 EIPALQDGRLQVVDRPLPIRGGNVGINSFGFGGSNVHVIL 404
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 70.7 bits (174), Expect = 3e-13
Identities = 51/216 (23%), Positives = 84/216 (38%), Gaps = 52/216 (24%)
Query: 226 CRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLAR-----LLGGVIN--------LH 272
C+ FD G+ + A+L+ K LAR +L N +
Sbjct: 214 CKAFDTAGNGYCRSEGVVAVLLT---------KKSLARRVYATILNAGTNTDGFKEQGV- 263
Query: 273 ATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVY-KNHF 331
T P+ + + ++ S+ + +G+ +Y+ HG+ + +GD E++ I
Sbjct: 264 -TF---PSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQ 319
Query: 332 SKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSGKKS 388
LL+ STKS GH +SG+ + ++ + PNL+ SP I G+
Sbjct: 320 EPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALL--DGRLQ 377
Query: 389 ISININNVMS------------NSFGFSGINSSIIL 412
V+ NSFGF G N IIL
Sbjct: 378 -------VVDQPLPVRGGNVGINSFGFGGSNVHIIL 406
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 68.1 bits (167), Expect = 2e-12
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 66/227 (29%)
Query: 226 CRPFDKLAEGFIYGQASAALLIE--------GNKNIKILNKSYLARLLGGVIN------- 270
C+PF K A+GF + + L+++ G LA L G +N
Sbjct: 250 CKPFSKAADGFGLAEGAGVLVLQRLSAARREGRP--------VLAVLRGSAVNQDGASNG 301
Query: 271 LHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNH 330
L TA P+ + V+ L+ +G++ +DY+ HG+ + LGD IE+ A+ Y
Sbjct: 302 L--TA---PSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAE 356
Query: 331 FSK---LLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFS 384
L + S KS GH ++G+ ++ +V+ +R + L+ + P I+ +
Sbjct: 357 RDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIE----WD 412
Query: 385 G-------------------KKSISININNVMSNSFGFSGINSSIIL 412
+ +S SFG SG N+ +I+
Sbjct: 413 LGAVSVVSQARSWPAGERPRRAGVS---------SFGISGTNAHVIV 450
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 67.7 bits (166), Expect = 3e-12
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 58/223 (26%)
Query: 226 CRPFDKLAEGFIYGQASAALLIE--------GNKNIKILNKSYLARLLGGVINLHATAS- 276
+ F A+GF + + +L+E G++ LA + G +N AS
Sbjct: 228 SKAFGAGADGFGFSEGVTLVLLERLSEARRNGHE--------VLAVVRGSALN-QDGASN 278
Query: 277 --PEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSK- 333
P+ + V+ L+ GL+ +D + HG+ + LGD IE +A+ + Y
Sbjct: 279 GLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDRDAD 338
Query: 334 --LLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESP---IDNQANFSG--- 385
L L S KS GH ++G+ ++ V+ +R + L++E P +D +S
Sbjct: 339 RPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVD----WSSGGV 394
Query: 386 ----------------KKSISININNVMSNSFGFSGINSSIIL 412
+ ++S +FG SG N+ +I+
Sbjct: 395 ALLAGNQPWRRGERTRRAAVS---------AFGISGTNAHVIV 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 76/436 (17%), Positives = 140/436 (32%), Gaps = 131/436 (30%)
Query: 25 IDYEINNTQSNFSKNII-----AKINNFNFKNSLNKITDLSEK--KKEFILHIAQKSP-- 75
+D+E Q + K+I+ A ++NF+ K+ + D+ + KE I HI
Sbjct: 7 MDFETGEHQYQY-KDILSVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIMSKDAV 61
Query: 76 -----LFI-----QTSIIAALQAWYNSKLHKKKYKILPERI-------GLIIAGHNTTQN 118
LF Q ++ Q + L + YK L I ++ + ++
Sbjct: 62 SGTLRLFWTLLSKQEEMV---QKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 119 YQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHG 178
Y+ F K Y R +Q + + +R ++ I G
Sbjct: 118 RLYNDNQVFAK---YNVSR--LQPYLK----LRQALLELRPAKNVL-----------IDG 157
Query: 179 MRLIQNNIVDA-----CLIISAMTDLSPMEIQAFHAIGAMGGKNFY-NFPKKTCRPFDKL 232
+ + + ++Q M K F+ N K C + +
Sbjct: 158 V---------LGSGKTWVALDVCLSY---KVQC-----KMDFKIFWLNL--KNCNSPETV 198
Query: 233 AEGF--IYGQASAAL--LIEGNKNIKI-LN--KSYLARLLGGVINLHATASPEPN----L 281
E + Q + + NIK+ ++ ++ L RLL + P N L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--------KSKPYENCLLVL 250
Query: 282 NNEISVMNS-VLKQSGLK---------KNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHF 331
N V N+ L K + D+L+ ++ D ++ + K+
Sbjct: 251 LN---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 332 SKLLLNSTKSL-----TGHCLYSSGIVEIIASVIQMRKKFIHPN-----------LNLES 375
K L + L T + S I E I + + H N LN+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 376 PIDNQANFSGKKSISI 391
P + + F +S+
Sbjct: 368 PAEYRKMF---DRLSV 380
Score = 39.1 bits (90), Expect = 0.003
Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 52/175 (29%)
Query: 17 SLIK--GKSGIDYEINNTQSNFSKNIIAK-------INNFNFKNSLNKITDLSEKKKE-- 65
SL++ K I + + + ++++N + + DL +
Sbjct: 415 SLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQY 472
Query: 66 FILHI---------AQKSPL---------FIQTSIIAALQAWY------NSKLHKKKYKI 101
F HI ++ L F++ I AW N+ K YK
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK- 531
Query: 102 LPERIGLIIAGHNTTQNYQYSLYPEFLKKPE---YLSPRYAIQFMDSNQIGIMSE 153
I + ++ +FL K E S + D +I +M+E
Sbjct: 532 -----PYICDNDPKYERLVNAIL-DFLPKIEENLICSK-----YTDLLRIALMAE 575
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.19
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 49 FKNSLNKITDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWY---NSKLHKKK 98
+ L ++ S+ ++ A+K L+ W + ++ K K
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKK-----------DLEEWNQRQSEQVEKNK 135
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 29.2 bits (64), Expect = 2.7
Identities = 7/61 (11%), Positives = 18/61 (29%)
Query: 7 IGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLSEKKKEF 66
+ + G E + T K++I I + + N+ ++
Sbjct: 320 YVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQELPSDPNRSPGYVDRNIVG 379
Query: 67 I 67
+
Sbjct: 380 L 380
>4fc2_A Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91A {Mus musculus}
Length = 521
Score = 29.4 bits (65), Expect = 2.9
Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 35/203 (17%)
Query: 33 QSNFSKNIIAKINNFNFKNSLNKITDLSEKKKEFILH----IAQKSP---LFIQTSIIAA 85
++ K+ + + NF + +K + + + +K P + +
Sbjct: 200 RNAKMKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLED 259
Query: 86 LQAWYNSKLHKKKYKILPE------------------RIGLIIAGHNTTQNYQYSLYPEF 127
W + + + E +G + G Q F
Sbjct: 260 FPEWERCEKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQE-----EIRF 314
Query: 128 LKKPEYLSPRYAIQFMDSNQIGIMSEIF---NIRGEGFIIGGASASGNIGIIHGMRLIQN 184
L PE + R + +D N+ I++ G A + + +
Sbjct: 315 LINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRRCT 374
Query: 185 NIV--DACLIISAMTDLSPMEIQ 205
IV DA + P +++
Sbjct: 375 EIVAIDALHFRRYLDQFVPEKVR 397
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 28.3 bits (64), Expect = 5.2
Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 163 IIGGASASGNIGIIHGMRLIQNNIVDACLIISAMT 197
++GGA ++ ++ +++ D L +
Sbjct: 195 VLGGAKVEDSLKVVE--NVLRRERADLVLTGGLVA 227
>3go5_A Multidomain protein with S1 RNA-binding domains; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.40A {Streptococcus pneumoniae}
Length = 285
Score = 28.0 bits (62), Expect = 5.3
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 302 IDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQ 361
+ YL ++G L DK IK + + K G L +G ++ +
Sbjct: 230 LTYLESNGGFMTLNDKSSPDDIKATF-----GISKGQFKKALGG-LMKAGKIKQDQFGTE 283
Query: 362 M 362
+
Sbjct: 284 L 284
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 27.9 bits (61), Expect = 6.5
Identities = 26/203 (12%), Positives = 56/203 (27%), Gaps = 35/203 (17%)
Query: 33 QSNFSKNIIAKINNFNFKNSLNKITDLSEKKKEFILH----IAQKSP---LFIQTSIIAA 85
++ K+ + + NF + +K + + + +K P + +
Sbjct: 257 RNAKMKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLED 316
Query: 86 LQAWYNSKLHKKKYKILPE------------------RIGLIIAGHNTTQNYQYSLYPEF 127
W + + E +G + G Q F
Sbjct: 317 FPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQE-----EIRF 371
Query: 128 LKKPEYLSPRYAIQFMDSNQIGIMSEIF---NIRGEGFIIGGASASGNIGIIHGMRLIQN 184
L PE + R + +D N+ I++ G A + + +
Sbjct: 372 LINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRCCT 431
Query: 185 NIV--DACLIISAMTDLSPMEIQ 205
IV DA + P +++
Sbjct: 432 EIVAIDALHFRRYLDQFVPEKVR 454
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.379
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,086,841
Number of extensions: 366905
Number of successful extensions: 1106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 984
Number of HSP's successfully gapped: 58
Length of query: 415
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 319
Effective length of database: 4,021,377
Effective search space: 1282819263
Effective search space used: 1282819263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)