RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5222
(415 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 119 bits (299), Expect = 6e-32
Identities = 50/253 (19%), Positives = 103/253 (40%), Gaps = 27/253 (10%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGI----DYEINNTQSNFSKNIIAKINNFNFKNSLNKI 56
+G ++ IG +F + + GKSG+ ++ + + + + + L ++
Sbjct: 9 LGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRL 68
Query: 57 TDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLII-AGHNT 115
F+Q ++IAA A ++ L + PER+G ++ G
Sbjct: 69 DR------------------FVQYALIAAQLALEDAGLKPEDLD--PERVGTLVGTGIGG 108
Query: 116 TQNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGI 175
+ ++ + P +SP + + + ++ + G + A A+G +
Sbjct: 109 METWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADAL 168
Query: 176 IHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
+R+IQ D L ++PM I AF + A+ +N P+K RPF +G
Sbjct: 169 GSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRN--EEPEKASRPFTLSRDG 226
Query: 236 FIYGQASAALLIE 248
F+ G+ + L++E
Sbjct: 227 FVMGEGAGVLVLE 239
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 101 bits (252), Expect = 2e-25
Identities = 55/253 (21%), Positives = 99/253 (39%), Gaps = 26/253 (10%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGI----DYEINNTQSNFSKNIIAKINNFNFKNSLNKI 56
+G++S +G + S +L+ G+SGI ++ + + F+ + +
Sbjct: 9 LGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRK 68
Query: 57 TDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTT 116
D FIQ I+A +QA +S L + RIG I
Sbjct: 69 MDA-----------------FIQYGIVAGVQAMQDSGLEITEEN--ATRIGAAIGSGIGG 109
Query: 117 QNYQYSLYPEFL-KKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGI 175
+ + P +SP + + + G ++ ++ +RG I A SG I
Sbjct: 110 LGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNI 169
Query: 176 IHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
H R+I D + A +P+ + F A A+ +N P+ RP+DK +G
Sbjct: 170 GHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDN--PQAASRPWDKERDG 227
Query: 236 FIYGQASAALLIE 248
F+ G + L++E
Sbjct: 228 FVLGDGAGMLVLE 240
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 94.9 bits (235), Expect = 2e-23
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 3/194 (1%)
Query: 222 PKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLG--GVINLHATASPEP 279
P+ RPFD +GF+ + +A ++E + A + G N + +
Sbjct: 3 PEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKA 62
Query: 280 NLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNST 339
+ + L +S IDY+N HGS + D+ E +A K H + ++S
Sbjct: 63 DGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSI 122
Query: 340 KSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDN-QANFSGKKSISININNVMS 398
KS+ GH L + G +EI A V+ + + P NL + ++ ++ + +V++
Sbjct: 123 KSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEARERKLRSVLT 182
Query: 399 NSFGFSGINSSIIL 412
GF G S+++L
Sbjct: 183 VGSGFGGFQSAMVL 196
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 94.3 bits (233), Expect = 1e-22
Identities = 48/252 (19%), Positives = 100/252 (39%), Gaps = 5/252 (1%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNS----LNKI 56
+G+V+ +G + + LI G+ GI + S + K+ F+ +S
Sbjct: 8 LGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPY 67
Query: 57 TDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTT 116
+ E + ++ FI ++ AA +A +++ + + I G +
Sbjct: 68 GSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSI 127
Query: 117 QNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGII 176
+ + K+ LSP + + + + G +S + +G A A+G I
Sbjct: 128 CDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIG 187
Query: 177 HGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGF 236
R+IQ D + + + + + F A+ K + P++ RPFD +GF
Sbjct: 188 DATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSS-PQEASRPFDCDRDGF 246
Query: 237 IYGQASAALLIE 248
+ G+ S +++E
Sbjct: 247 VIGEGSGVIVLE 258
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 91.9 bits (227), Expect = 7e-22
Identities = 51/253 (20%), Positives = 98/253 (38%), Gaps = 26/253 (10%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGI----DYEINNTQSNFSKNIIAKINNFNFKNSLNKI 56
+G ++ IG + + L++G++GI ++ ++ F + K
Sbjct: 9 LGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKR 68
Query: 57 TDLSEKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLII-AGHNT 115
D F ++ A+ QA ++KL ++ + IG++I G
Sbjct: 69 MDR-----------------FCHFAVCASQQAINDAKLVI--NELNADEIGVLIGTGIGG 109
Query: 116 TQNYQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGI 175
+ + K P SP + + G+ + +G A A+G+ I
Sbjct: 110 LKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAI 169
Query: 176 IHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEG 235
RL+QN A + ++P+ F + A+ +N + P RPFDK +G
Sbjct: 170 GDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRN--DDPLHASRPFDKDRDG 227
Query: 236 FIYGQASAALLIE 248
F+ G+ S L++E
Sbjct: 228 FVMGEGSGILILE 240
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 90.0 bits (222), Expect = 4e-21
Identities = 56/249 (22%), Positives = 95/249 (38%), Gaps = 19/249 (7%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
G+ S IG F NSL GK GI I K ++ +F
Sbjct: 16 YGVTSPIGNTPEEFWNSLATGKIGIGG-------------ITKFDHSDFDVHNAAEIQDF 62
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLII-AGHNTTQNY 119
K F+ + + ++ AA +A ++ L + +R G+I+ +G +
Sbjct: 63 PFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANL--DVEALNRDRFGVIVASGIGGIKEI 120
Query: 120 QYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHGM 179
+ + K P+ + P + + + G ++ F G I A +S N I
Sbjct: 121 EDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAF 180
Query: 180 RLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIYG 239
R I+ D L+ ++P I F A+ A+ P + PFDK GF+ G
Sbjct: 181 RSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED---PTRASIPFDKDRNGFVMG 237
Query: 240 QASAALLIE 248
+ S L++E
Sbjct: 238 EGSGMLVLE 246
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 87.7 bits (216), Expect = 8e-21
Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 3/192 (1%)
Query: 222 PKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNL 281
P + PFD+ A G++ G+ A L++E + + + L G + A
Sbjct: 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRP 61
Query: 282 NNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKS 341
+ L +G +D + G+ P D E AI V+ + K+
Sbjct: 62 AGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVP--VTVPKT 119
Query: 342 LTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPIDN-QANFSGKKSISININNVMSNS 400
TG G ++++ +++ +R+ I P + S + + S + +
Sbjct: 120 TTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVLGEPRSTAPRTALVLA 179
Query: 401 FGFSGINSSIIL 412
G G NS+ +L
Sbjct: 180 RGRWGFNSAAVL 191
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 85.2 bits (210), Expect = 3e-20
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 261 LARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
A L+G ++ H T+ P N M + L+ +G++ + I Y+N HG+S+P GDK
Sbjct: 3 YAELVGFGMSSDAYHMTS-PPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDK 61
Query: 318 IEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPI 377
E A+K ++ S++L++STKS+TGH L ++G VE I S++ +R + + P +NL++P
Sbjct: 62 AEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPD 121
Query: 378 DNQANFSGKKSI--SININNVMSNSFGFSGINSSIIL 412
+ + + NSFGF G N S+I
Sbjct: 122 EGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 158
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 84.8 bits (209), Expect = 3e-20
Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 262 ARLLGGVINL---HATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDKI 318
A L G ++ H T P + + M L+QSGL N IDY+N H +S+P+GD +
Sbjct: 2 AELCGYGMSGDAHHITQ-PPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAV 60
Query: 319 EISAIKEVYKNH--FSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLE-- 374
E AIK V+ H L +STK TGH L ++G VE I S++ + LN++
Sbjct: 61 EARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNP 120
Query: 375 SPIDNQANFSGKKSISININNVMSNSFGFSGINSSIIL 412
PI ++ S + + MSNSFGF G N+S++
Sbjct: 121 DPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLF 158
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 84.0 bits (207), Expect = 7e-20
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 261 LARLLGGVINL---HATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
++G + H TA P P+ + LK SGLK M+ Y+N HG+S+P D
Sbjct: 3 YGEMVGYAMTCDAYHITA-PVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDV 61
Query: 318 IEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPI 377
E AIK+ NH + ++STKS+TGH L SG +E +A+V+ + + + P +NLE+P
Sbjct: 62 TETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPD 121
Query: 378 DN-QANFSGKKSISININNVMSNSFGFSGINSSIIL 412
++ +S ++ ++ +SNSFGF G N ++
Sbjct: 122 PECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAF 157
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 86.2 bits (212), Expect = 8e-20
Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 19/250 (7%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+GIVSSIG + SL +G+SGI + S ++ +
Sbjct: 9 LGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGL--------- 59
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAG--HNTTQN 118
+ + + ++ QA ++ L + Y+ R+GLI +
Sbjct: 60 -----IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN-NPRVGLIAGSGGGSPRFQ 113
Query: 119 YQYSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHG 178
+ + + + P + M S ++ F I G + I A A+ I +
Sbjct: 114 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 173
Query: 179 MRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNFPKKTCRPFDKLAEGFIY 238
+ Q + ++ + + E+ + + P+K R +D +GF+
Sbjct: 174 VE--QIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVI 231
Query: 239 GQASAALLIE 248
+++E
Sbjct: 232 AGGGGMVVVE 241
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 82.9 bits (204), Expect = 1e-19
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 261 LARLLGGVINL---HATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
A L+G + H T P P M LK +G+ + Y+N HG+S+P+GD+
Sbjct: 3 YAELVGFGRSADAHHITE-PHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDR 61
Query: 318 IEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPI 377
E+ AIK V+ +H +L+++STKS+ GH L ++G VE IA+V + I P +NLE P
Sbjct: 62 AEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPD 121
Query: 378 DNQANFSGKKSISININNVMSNSFGFSGINSSIILCK 414
+ ++ +SNSF F G N+ + +
Sbjct: 122 PELDLDFVPEPREAKVDYALSNSFAFGGHNAVLAFKR 158
>d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 151
Score = 74.8 bits (183), Expect = 8e-17
Identities = 42/114 (36%), Positives = 75/114 (65%), Gaps = 3/114 (2%)
Query: 300 NMIDYLNTHGSSSPLGDKIEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASV 359
IDYLN+HG+S+P+GD E++AI+EV+ + +++TK++TGH L ++G+ E I S+
Sbjct: 37 TPIDYLNSHGTSTPVGDVKELAAIREVFGDK--SPAISATKAMTGHSLGAAGVQEAIYSL 94
Query: 360 IQMRKKFIHPNLNLESPIDNQANFSG-KKSISININNVMSNSFGFSGINSSIIL 412
+ + FI P++N+E + A + ++ + VMSNSFGF G N+++++
Sbjct: 95 LMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 148
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 158
Score = 72.1 bits (176), Expect = 9e-16
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 8/158 (5%)
Query: 261 LARLLGGVIN---LHATASPEPNLNNEISVMNSVLKQSGLKKNMIDYLNTHGSSSPLGDK 317
LA ++G H T+ P P I + L+++ + + Y+N HG+S+P +K
Sbjct: 3 LAEVVGYGNTCDAYHMTS-PHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 318 IEISAIKEVYKNHFSKLLLNSTKSLTGHCLYSSGIVEIIASVIQMRKKFIHPNLNLESPI 377
E AI V + ++STKS TGH L ++G VE I ++ MR F+
Sbjct: 62 GESGAIVAVLGKE---VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVS 118
Query: 378 DN-QANFSGKKSISININNVMSNSFGFSGINSSIILCK 414
D +AN + + I +SN+FGF G N+ + +
Sbjct: 119 DYIEANVVYGQGLEKEIPYAISNTFGFGGHNAVLAFKR 156
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 62.4 bits (150), Expect = 7e-12
Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 18/222 (8%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G+ + G F L G++ I+ + +++ + D
Sbjct: 8 VGVRAPGGNGTRQFWELLTSGRTATRR-------------ISFFDPSPYRSQVAAEADFD 54
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQNYQ 120
+ F + Q ++ A +A+ S L + L A T +
Sbjct: 55 PVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLER 114
Query: 121 YSL-----YPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGI 175
L ++ +LS + S ++ G ++ SG +
Sbjct: 115 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 174
Query: 176 IHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKN 217
+ +R I+ D +A T ++P+ + F AI A +N
Sbjct: 175 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARN 216
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 48.5 bits (114), Expect = 3e-07
Identities = 26/213 (12%), Positives = 65/213 (30%), Gaps = 15/213 (7%)
Query: 1 MGIVSSIGFDIASFSNSLIKGKSGIDYEINNTQSNFSKNIIAKINNFNFKNSLNKITDLS 60
+G+V+ G +A + ++++ G+ G+ S + + +I++F+ + + L
Sbjct: 7 VGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPG--RLL 64
Query: 61 EKKKEFILHIAQKSPLFIQTSIIAALQAWYNSKLHKKKYKILPERIGLIIAGHNTTQNYQ 120
+ + +Q +
Sbjct: 65 PQTDPSTRLALTAADWALQDAKADPESLTDYDMGVV------------TANACGGFDFTH 112
Query: 121 YSLYPEFLKKPEYLSPRYAIQFMDSNQIGIMSEIFNIRGEGFIIGGASASGNIGIIHGMR 180
+ + P+ +S + + + G +S +RG + A G + H R
Sbjct: 113 REFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARR 172
Query: 181 LIQNNIVDACLIISAMTDLSPMEIQAFHAIGAM 213
I+ + + L P + A G +
Sbjct: 173 TIRRG-TPLVVSGGVDSALDPWGWVSQIASGRI 204
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 145
Score = 27.4 bits (60), Expect = 1.8
Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 9/144 (6%)
Query: 163 IIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNF-YNF 221
IIG ASG +G + L + + ++I ++ +E A+ G N
Sbjct: 5 IIG---ASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 222 PKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNL 281
++ + E + S EG + + + A+++G A
Sbjct: 62 YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTN--AKIVGKYAKKIAEICDTKIF 119
Query: 282 --NNEISVMNSV-LKQSGLKKNMI 302
N + VM L S ++N +
Sbjct: 120 VITNPVDVMTYKALVDSKFERNQV 143
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 26.9 bits (59), Expect = 2.7
Identities = 18/145 (12%), Positives = 47/145 (32%), Gaps = 14/145 (9%)
Query: 163 IIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQA-FHAIGAMGGKNFYNF 221
++G A G +G G + +I D + + D+ E A G + +
Sbjct: 5 VVGAA---GTVGAAAGYNIALRDIADEVVFV----DIPDKEDDTVGQAADTNHGIAYDSN 57
Query: 222 PKKTCRPFDKLAEGFIYGQASAALLIEGNKNIKILNKSYLARLLGGVINLHATASPEPNL 281
+ ++ A + + G I + + A ++ + + + +
Sbjct: 58 TRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDN--APIMEDIQSSLDEHNDDYIS 115
Query: 282 N---NEISVMNSVL-KQSGLKKNMI 302
N + ++N L + + +
Sbjct: 116 LTTSNPVDLLNRHLYEAGDRSREQV 140
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus
thermophilus [TaxId: 274]}
Length = 258
Score = 27.1 bits (59), Expect = 3.8
Identities = 8/59 (13%), Positives = 21/59 (35%)
Query: 163 IIGGASASGNIGIIHGMRLIQNNIVDACLIISAMTDLSPMEIQAFHAIGAMGGKNFYNF 221
I G+ + G G+ +++ V ++ +T + + +Q H +
Sbjct: 6 TIAGSDSGGGAGVQADLKVFFRFGVYGTSALTLVTAQNTLGVQRVHLLPPEVVYAQIES 64
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
[TaxId: 274]}
Length = 426
Score = 27.1 bits (59), Expect = 5.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 233 AEGFIYGQASAALLIEGNKN 252
AE F++G A++A IEG
Sbjct: 2 AEKFLWGVATSAYQIEGATQ 21
>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid
(Brevicoryne brassicae) [TaxId: 69196]}
Length = 462
Score = 26.7 bits (58), Expect = 6.5
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 11/34 (32%)
Query: 219 YNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKN 252
Y FPK F++G ++A+ IEG N
Sbjct: 1 YKFPK-----------DFMFGTSTASYQIEGGWN 23
>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 423
Score = 26.4 bits (57), Expect = 7.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 231 KLAEGFIYGQASAALLIEGNKN 252
K E F++G A+++ IEGN
Sbjct: 4 KFPEMFLFGTATSSHQIEGNNR 25
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
1406]}
Length = 447
Score = 26.3 bits (57), Expect = 8.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 11/34 (32%)
Query: 219 YNFPKKTCRPFDKLAEGFIYGQASAALLIEGNKN 252
+ FP+ F++G A+AA IEG
Sbjct: 3 FQFPQ-----------DFMWGTATAAYQIEGAYQ 25
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima
[TaxId: 2336]}
Length = 443
Score = 26.3 bits (57), Expect = 8.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 231 KLAEGFIYGQASAALLIEGNKN 252
K EGF++G A+A+ IEG+
Sbjct: 3 KFPEGFLWGVATASYQIEGSPL 24
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 25.9 bits (56), Expect = 9.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 231 KLAEGFIYGQASAALLIEGNKN 252
K + F+ G +S+ E
Sbjct: 2 KFPKDFMIGYSSSPFQFEAGIP 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.379
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,484,601
Number of extensions: 69729
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 33
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)