BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5224
(1178 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399020468|ref|ZP_10722598.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Herbaspirillum sp. CF444]
gi|398094883|gb|EJL85237.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Herbaspirillum sp. CF444]
Length = 496
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/373 (67%), Positives = 310/373 (83%), Gaps = 1/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y +K WID FNI YFLGIDGLSLWFIPLTAFIT+I++L + I+K++A+YM AFLI
Sbjct: 64 YQFVEKTPWIDRFNISYFLGIDGLSLWFIPLTAFITVIVVLAGWEVIQKRVAQYMGAFLI 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
LSGL+IG F ALDGMLFY+FFEATLIP+FII+G WGG+NR YAA KFFLYTL+GSLLMLI
Sbjct: 124 LSGLMIGVFSALDGMLFYVFFEATLIPMFIIVGVWGGANRVYAAFKFFLYTLLGSLLMLI 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
++IYLY +S SF I +WHQL ++ IEQ LF F +AFA+K+P+WP+HTWLPDAHVEAP
Sbjct: 184 ALIYLYIVSGGSFEIPTWHQLPLSMIEQKLLFFAFLMAFAVKVPMWPVHTWLPDAHVEAP 243
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GS++LAAIMLKLG YG LRFSLPI PDAS+ S +ITLSL+++IYI L+A+VQ D+K
Sbjct: 244 TGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMK 303
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KL+AYSSIAHMGFVTLG FM +++QG I QMISH +S AMF+SIG LY++M TR I+
Sbjct: 304 KLVAYSSIAHMGFVTLGFFMFNDMAVQGGIAQMISHGFVSGAMFMSIGVLYDRMHTREIA 363
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P F+ FFI+FSLANC LP TSGF+GEFM+IL AVKFNF IG+L++TALI
Sbjct: 364 QYGGVVNKMPRFAAFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLSATALILG 423
Query: 576 AAYSLCLSKNIIF 588
AAYSL L+K +IF
Sbjct: 424 AAYSLWLTKRVIF 436
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL++ F + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WHQLPLSMIEQKLLFFAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ ALS ++ + + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + A I +++H F +F+S G ++ + H ++I GG+ MP
Sbjct: 320 GFFMFNDMAVQGGIAQMISHGFVSGAMFMSIG-VLYDRMHTREIAQYGGVVNKMPRFAAF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ L+ G P SGF +
Sbjct: 379 FILFSLANCGLPATSGFVGE 398
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 133/290 (45%), Gaps = 38/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITG-T 659
L ++ L+ + + V + N ++ AA K+F+ +L S ML + LY ++G +
Sbjct: 139 LFYVFFEATLIPMFIIVGVWGGANRVY---AAFKFFLYTLLGSLLMLIALIYLYIVSGGS 195
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
E+ + ++ + L+ I +L + L+ + K+ + P H W+PD + A
Sbjct: 196 FEIPT-WHQLPLSMIEQKLLFFAFLM---AFAVKVPMWPVHTWLPDAHVEAP-------- 243
Query: 720 TTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFK 771
T + L I+ +L ++ LP+ + L + L++ ++I + A+ Q + K
Sbjct: 244 TGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMK 303
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILL 829
+++AYSSIAHMG + +FN + G+ +I++ F F I +L
Sbjct: 304 KLVAYSSIAHMGFVTL----------GFFMFNDMAVQGGIAQMISHGFVSGAMFMSIGVL 353
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ T E+ + G+ + P A ++F + G P T GF +F +
Sbjct: 354 YDRM--HTREIAQYGGVVNKMPRFAAFFILFSLANCGLPATSGFVGEFMV 401
>gi|340786793|ref|YP_004752258.1| NADH-ubiquinone oxidoreductase subunit M [Collimonas fungivorans
Ter331]
gi|340552060|gb|AEK61435.1| NADH-ubiquinone oxidoreductase chain M [Collimonas fungivorans
Ter331]
Length = 494
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/404 (63%), Positives = 322/404 (79%), Gaps = 15/404 (3%)
Query: 200 SLIGLLSLVGA--------PFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFI 245
+L+ LSL+GA P GF + +K WID FN+ Y+LGIDG+SLWF+
Sbjct: 31 TLVRWLSLLGAAVSFVVTLPLVCGFDNAFHGMQFVEKTTWIDRFNVNYYLGIDGISLWFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
PLTAFIT+++++ + I+KK+A+YM AFLILSGL+IG FCALDGMLFY+FFEATL+P+F
Sbjct: 91 PLTAFITVLVVISAWQVIEKKVAQYMGAFLILSGLMIGVFCALDGMLFYVFFEATLVPMF 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
II+G WGG+NR YAAIKFFLYTLMGSLLMLI+++YLY S SF IL+WHQL +T QI
Sbjct: 151 IIVGVWGGANRVYAAIKFFLYTLMGSLLMLIALLYLYIQSGGSFEILTWHQLPLTMTAQI 210
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
+F+ F +AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PD
Sbjct: 211 LIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGGYGFLRFSLPITPD 270
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
AS+Y + IITLSLI++IYI L+A+VQ D+KKLIAYSSIAHMGFVTLG F+ I +QG
Sbjct: 271 ASHYLAGFIITLSLIAVIYIGLVALVQNDMKKLIAYSSIAHMGFVTLGFFIFNDIGLQGG 330
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
I+QMISH +S AMF+ IG LY++M TR I+ +GG++NV+P F+ F++FSLAN LPGT
Sbjct: 331 IVQMISHGFVSGAMFLCIGVLYDRMHTRQIAEYGGVVNVMPRFAALFVLFSLANSGLPGT 390
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL AVKFNF IG+L +TALI AAYSL L K ++F
Sbjct: 391 SGFVGEFMVILGAVKFNFWIGLLAATALILGAAYSLWLVKRVVF 434
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 18/205 (8%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL +TA + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 199 WHQLPLTMTAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGG 257
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ I+ + I ++GL+ ++QND+K++IAYS+++ +G++T+
Sbjct: 258 YGFLRFSLPITPDASHYLAGFIITLSLIAVIYIGLVALVQNDMKKLIAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ I +++H F +FL G ++ + H + I GG+ MP
Sbjct: 318 GFFIFNDIGLQG---GIVQMISHGFVSGAMFLCIG-VLYDRMHTRQIAEYGGVVNVMP-- 371
Query: 197 CITSLIGLLSLV--GAPFFSGFYSK 219
+L L SL G P SGF +
Sbjct: 372 RFAALFVLFSLANSGLPGTSGFVGE 396
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 147/332 (44%), Gaps = 51/332 (15%)
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSLTLCVLI 619
T L+ +A+ + + K + +G +++SG L ++ L+ + + V +
Sbjct: 97 TVLVVISAWQV-IEKKVAQYMGAFLILSGLMIGVFCALDGMLFYVFFEATLVPMFIIVGV 155
Query: 620 ASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVL 679
N ++ AAIK+F+ ++ S ML + LY ++ F ++ + + ++
Sbjct: 156 WGGANRVY---AAIKFFLYTLMGSLLMLIALLYLY-----IQSGGSFEILTWHQLPLTMT 207
Query: 680 A--LSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL---- 733
A L L ++ + K+ + P H W+PD + A T + L I+ +L
Sbjct: 208 AQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGGYG 259
Query: 734 LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI 789
++ LP+ + L + L++ ++I + A+ Q + K++IAYSSIAHMG +
Sbjct: 260 FLRFSLPITPDASHYLAGFIITLSLIAVIYIGLVALVQNDMKKLIAYSSIAHMGFVTL-- 317
Query: 790 ISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLH 847
IFN G+ +I++ F F I +L + T ++ + G+
Sbjct: 318 --------GFFIFNDIGLQGGIVQMISHGFVSGAMFLCIGVLYDRM--HTRQIAEYGGVV 367
Query: 848 QRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A + ++F + +G P T GF +F +
Sbjct: 368 NVMPRFAALFVLFSLANSGLPGTSGFVGEFMV 399
>gi|300311107|ref|YP_003775199.1| NADH dehydrogenase I subunit M [Herbaspirillum seropedicae SmR1]
gi|300073892|gb|ADJ63291.1| transmembrane NADH dehydrogenase I (chain M) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 496
Score = 501 bits (1290), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/373 (65%), Positives = 304/373 (81%), Gaps = 1/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLI 275
Y +K WID FNI YFLG+DG+SLWF+PLTAFIT+I++L + I+K++A+YM AFLI
Sbjct: 64 YQFVEKTPWIDRFNISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGAFLI 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
LSG+++G F ALD MLFY FFEATLIP+FII+G WGG NR YAA K FLYTL+GSLLMLI
Sbjct: 124 LSGIMVGVFSALDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLLMLI 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
++IYLYY+S SF I +WHQ+ ++ +EQ LF F AFA+K+P+WP+HTWLPDAHV+AP
Sbjct: 184 ALIYLYYVSGGSFEIPTWHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAP 243
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GS++LAAIMLKLG YG LRFSLPI PDAS+ S +I LSL+++IYI L+A+VQ D+K
Sbjct: 244 TGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMK 303
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KL+AYSSIAHMGFVTLG FM +++QG I+QMISH +S AMF+ IG LY+QM TR IS
Sbjct: 304 KLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTREIS 363
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P F+ FFI+FSLANC LP TSGF+GEFM+IL AVKFNF IG+L +TALI
Sbjct: 364 QYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILG 423
Query: 576 AAYSLCLSKNIIF 588
AAYSL L+K +IF
Sbjct: 424 AAYSLWLAKRVIF 436
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL++ F K +P+HTWLPD+ ++ PT S ++ AA M+ G
Sbjct: 201 WHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAPTGGS-IVLAAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ ALS ++F+ + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + A I +++H F +F+ G ++ + H ++I GG+ MP
Sbjct: 320 GFFMFNDMAVQGGIVQMISHGFVSGAMFMCIG-VLYDQMHTREISQYGGVVNKMPRFAFF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ L+ G P SGF +
Sbjct: 379 FILFSLANCGLPATSGFVGE 398
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 29/257 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
AA K F+ +L S ML + LY ++G F + + + S+L + +
Sbjct: 166 AAFKLFLYTLLGSLLMLIALIYLYYVSG-----GSFEIPTWHQVPLSMLEQKILFFAFLA 220
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G SI++ ++ KL + + R + L
Sbjct: 221 AFAVKVPMWPVHTWLPDAHVQAPTGGSIVLAAIML---KLGAYGFL-RFSLPILPDASHA 276
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN- 803
++ L++ ++I + A+ Q + K+++AYSSIAHMG + +FN
Sbjct: 277 LSGFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL----------GFFMFND 326
Query: 804 -SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ G+ +I++ F F I +L + T E+ + G+ + P A ++F
Sbjct: 327 MAVQGGIVQMISHGFVSGAMFMCIGVLYDQM--HTREISQYGGVVNKMPRFAFFFILFSL 384
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 385 ANCGLPATSGFVGEFMV 401
>gi|395763166|ref|ZP_10443835.1| NADH dehydrogenase I subunit M [Janthinobacterium lividum PAMC
25724]
Length = 499
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/369 (64%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI FNI+Y LGIDGLSLWF+PLTAFIT+I+++ + I+K++A+YM AFLILSGL
Sbjct: 72 EKAPWIATFNIWYSLGIDGLSLWFVPLTAFITVIVVISAWQVIEKRVAQYMGAFLILSGL 131
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALDG+LFY FFEATLIP+FIIIG WGGSNR YA+ KFFLYT GSLL L+++IY
Sbjct: 132 MIGVFCALDGLLFYFFFEATLIPMFIIIGIWGGSNRVYASFKFFLYTFFGSLLTLVAIIY 191
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
L +S +F+IL+WH +T EQI++F+ F +AFA+K+P++P+HTWLPD HVEAPT GS
Sbjct: 192 LRNVSG-TFDILAWHAFKLTMHEQIFIFLAFLMAFAVKVPMFPVHTWLPDVHVEAPTGGS 250
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+LAAIMLKLG YG LRFSLPI PDAS+Y S +I LSLI++IYI L+A+VQ D+KKL+A
Sbjct: 251 AVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMIALSLIAVIYIGLVALVQTDMKKLVA 310
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG FM IS+QG I+QM+SH IS AMF+ IG LY++M TR I+++GG
Sbjct: 311 YSSIAHMGFVTLGFFMFNDISVQGGIVQMVSHGFISGAMFLCIGVLYDRMHTRNIADYGG 370
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ FF++FS+ANC LP TSGF+GEFM+IL AV+FNF IG+L +TALI+ AAYS
Sbjct: 371 VVNRMPKFAAFFVLFSMANCGLPATSGFVGEFMVILGAVQFNFWIGLLAATALIWGAAYS 430
Query: 580 LCLSKNIIF 588
L ++K ++F
Sbjct: 431 LWMAKRVVF 439
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ L + + FL + K FP+HTWLPD +E PT SA++ AA M+ G
Sbjct: 204 WHAFKLTMHEQIFIFLAFLMAFAVKVPMFPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 262
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS ++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 263 YGFLRFSLPITPDASHYLSGFMIALSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTL 322
Query: 143 GLGVS---AYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + + I +++H F +FL G ++ + H ++I + GG+ MP
Sbjct: 323 GFFMFNDISVQGGIVQMVSHGFISGAMFLCIG-VLYDRMHTRNIADYGGVVNRMPKFAAF 381
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 382 FVLFSMANCGLPATSGFVGE 401
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 42/263 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ S L I L ++GT ++ + ++ KL + L+ L+
Sbjct: 170 ASFKFFLYTFFGSLLTLVAIIYLRNVSGTFDILA-WHAFKLTMHEQIFIFLAFLM---AF 225
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
+ K+ + P H W+PDV+ G++++ ++L KL + ++ LP+ +
Sbjct: 226 AVKVPMFPVHTWLPDVHVEAPTGGSAVLAAIML----KLGAYG-----FLRFSLPITPDA 276
Query: 746 QKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTSH 796
L + L++ ++I + A+ Q + K+++AYSSIAHMG + +F+ IS++
Sbjct: 277 SHYLSGFMIALSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFMFNDISVQGGI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
++ +F I ++ + +T N D + G+ R P A
Sbjct: 337 VQMVSHGFISGAMFLCIGVLYD-----------RMHTRNIAD----YGGVVNRMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
++F + G P T GF +F +
Sbjct: 382 FVLFSMANCGLPATSGFVGEFMV 404
>gi|415906406|ref|ZP_11552701.1| NADH-quinone oxidoreductase subunit M [Herbaspirillum frisingense
GSF30]
gi|407763128|gb|EKF71845.1| NADH-quinone oxidoreductase subunit M [Herbaspirillum frisingense
GSF30]
Length = 488
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/373 (65%), Positives = 304/373 (81%), Gaps = 1/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLI 275
Y +K WID FNI YFLG+DG+SLWF+PLTAFIT+I++L + I+K++A+YM AFLI
Sbjct: 56 YQFVEKTPWIDRFNISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGAFLI 115
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
LSG++IG F +LD MLFY FFEATLIP+FII+G WGG NR YAA K FLYTL+GSLLMLI
Sbjct: 116 LSGIMIGVFSSLDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLLMLI 175
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
++IYLYY+S SF I +WHQ+ ++ +EQ LF F AFA+K+P+WP+HTWLPDAHV+AP
Sbjct: 176 ALIYLYYVSGGSFEIPTWHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAP 235
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GS++LAAIMLKLG YG LRFSLPI PDAS+ S +I LSL+++IYI L+A+VQ D+K
Sbjct: 236 TGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMK 295
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KL+AYSSIAHMGFVTLG FM +++QG I+QMISH +S AMF+ IG LY+QM TR IS
Sbjct: 296 KLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTREIS 355
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P F+ FFI+FSLANC LP TSGF+GEFM+IL AVKFNF IG+L +TALI
Sbjct: 356 QYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILG 415
Query: 576 AAYSLCLSKNIIF 588
AAYSL L+K +IF
Sbjct: 416 AAYSLWLAKRVIF 428
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL++ F K +P+HTWLPD+ ++ PT S ++ AA M+ G
Sbjct: 193 WHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAPTGGS-IVLAAIMLKLGA 251
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ ALS ++F+ + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 252 YGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL 311
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + A I +++H F +F+ G ++ + H ++I GG+ MP
Sbjct: 312 GFFMFNDMAVQGGIVQMISHGFVSGAMFMCIG-VLYDQMHTREISQYGGVVNKMPRFAFF 370
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ L+ G P SGF +
Sbjct: 371 FILFSLANCGLPATSGFVGE 390
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 29/257 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
AA K F+ +L S ML + LY ++G F + + + S+L + +
Sbjct: 158 AAFKLFLYTLLGSLLMLIALIYLYYVSG-----GSFEIPTWHQVPLSMLEQKILFFAFLA 212
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G SI++ ++ KL + + R + L
Sbjct: 213 AFAVKVPMWPVHTWLPDAHVQAPTGGSIVLAAIML---KLGAYGFL-RFSLPILPDASHA 268
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN- 803
++ L++ ++I + A+ Q + K+++AYSSIAHMG + +FN
Sbjct: 269 LSGFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL----------GFFMFND 318
Query: 804 -SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ G+ +I++ F F I +L + T E+ + G+ + P A ++F
Sbjct: 319 MAVQGGIVQMISHGFVSGAMFMCIGVLYDQM--HTREISQYGGVVNKMPRFAFFFILFSL 376
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 377 ANCGLPATSGFVGEFMV 393
>gi|329907894|ref|ZP_08274720.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium
IMCC9480]
gi|327546876|gb|EGF31794.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium
IMCC9480]
Length = 500
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/369 (65%), Positives = 306/369 (82%), Gaps = 1/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNI YFLGIDG+SLW + LT+FIT+I+++ + + I+KK+A+YM AFLILSGL
Sbjct: 72 EKMPWIERFNIQYFLGIDGISLWLVVLTSFITIIVVISAWEVIQKKVAQYMGAFLILSGL 131
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALDGMLFY+FFEATLIP+FIIIG WGG NR YAAIKFFLYT GSLLML++++Y
Sbjct: 132 MVGVFCALDGMLFYVFFEATLIPMFIIIGVWGGGNRVYAAIKFFLYTFFGSLLMLVALLY 191
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S SF+I WH L + QI LF+ F +AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 192 LYFASGGSFDITYWHDLPLPLNVQIPLFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS 251
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+Y + ++ITLSLI++IYI L+A+VQ D+KKL+A
Sbjct: 252 VVLAAIMLKLGAYGFLRFSLPITPDASHYLAPMMITLSLIAVIYIGLVALVQTDMKKLVA 311
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F +++QG I+QM+SH +S+AMF+ IG LY++M TR I+++GG
Sbjct: 312 YSSIAHMGFVTLGFFAFNDMAVQGGIVQMVSHGFVSAAMFLCIGVLYDRMHTRAIADYGG 371
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ FF++FSLANC LP TSGF+GEFM+IL A+KFNF IG+L TALIF AAYS
Sbjct: 372 VVNTMPKFAAFFVLFSLANCGLPATSGFVGEFMVILGAIKFNFWIGLLAGTALIFGAAYS 431
Query: 580 LCLSKNIIF 588
L L K +IF
Sbjct: 432 LWLVKRVIF 440
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 109/203 (53%), Gaps = 8/203 (3%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVT 81
I +W+D PL + + FL + K +P+HTWLPD+ +E PT S ++ AA M+
Sbjct: 202 ITYWHDLPLPLNVQIPLFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLK 260
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 261 LGAYGFLRFSLPITPDASHYLAPMMITLSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGF 320
Query: 140 MTVG---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
+T+G A I +++H F A +FL G ++ + H + I + GG+ MP
Sbjct: 321 VTLGFFAFNDMAVQGGIVQMVSHGFVSAAMFLCIG-VLYDRMHTRAIADYGGVVNTMPKF 379
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ L+ G P SGF +
Sbjct: 380 AAFFVLFSLANCGLPATSGFVGE 402
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 24/203 (11%)
Query: 684 LLIIVGLSFKLGISPFHMWVPDVY----QGASII---ITLLLSTTPKLSLFVIIYRLLIK 736
L ++ + K+ + P H W+PD + G S++ I L L L + I
Sbjct: 220 LAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 279
Query: 737 CLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSH 796
L P++I L++ ++I + A+ Q + K+++AYSSIAHMG + +
Sbjct: 280 YLAPMMIT-------LSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFAF---- 328
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
N++ + G+ ++++ F F I +L + T + + G+ P A
Sbjct: 329 NDM----AVQGGIVQMVSHGFVSAAMFLCIGVLYDRM--HTRAIADYGGVVNTMPKFAAF 382
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
++F + G P T GF +F +
Sbjct: 383 FVLFSLANCGLPATSGFVGEFMV 405
>gi|409405602|ref|ZP_11254064.1| transmembrane NADH dehydrogenase I subunit M [Herbaspirillum sp.
GW103]
gi|386434151|gb|EIJ46976.1| transmembrane NADH dehydrogenase I subunit M [Herbaspirillum sp.
GW103]
Length = 496
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/373 (64%), Positives = 304/373 (81%), Gaps = 1/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLI 275
Y +K WID F+I YFLG+DG+SLWF+PLTAFIT+I++L + I+K++A+YM AFLI
Sbjct: 64 YQFVEKTPWIDRFSISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGAFLI 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
LSG++IG F +LD MLFY FFEATLIP+FII+G WGG NR YAA K FLYTL+GSLLMLI
Sbjct: 124 LSGIMIGVFSSLDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLLMLI 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
++IYLYY+S SF I +WHQ+ ++ +EQ LF F AFA+K+P+WP+HTWLPDAHV+AP
Sbjct: 184 ALIYLYYVSGGSFEIPTWHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAP 243
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GS++LAAIMLKLG YG LRFSLPI PDAS+ S +I LSL+++IYI L+A+VQ D+K
Sbjct: 244 TGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMK 303
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KL+AYSSIAHMGFVTLG FM +++QG I+QMISH +S AMF+ IG LY+QM TR IS
Sbjct: 304 KLVAYSSIAHMGFVTLGFFMFNDMALQGGIVQMISHGFVSGAMFMCIGVLYDQMHTREIS 363
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P F+ FFI+FSLANC LP TSGF+GEFM+IL AVKFNF IG+L +TALI
Sbjct: 364 QYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILG 423
Query: 576 AAYSLCLSKNIIF 588
AAYSL L+K +IF
Sbjct: 424 AAYSLWLAKRVIF 436
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL++ F K +P+HTWLPD+ ++ PT S ++ AA M+ G
Sbjct: 201 WHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAPTGGS-IVLAAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ ALS ++F+ + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + A I +++H F +F+ G ++ + H ++I GG+ MP
Sbjct: 320 GFFMFNDMALQGGIVQMISHGFVSGAMFMCIG-VLYDQMHTREISQYGGVVNKMPRFAFF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ L+ G P SGF +
Sbjct: 379 FILFSLANCGLPATSGFVGE 398
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 37/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
AA K F+ +L S ML + LY ++G F + + + S+L + +
Sbjct: 166 AAFKLFLYTLLGSLLMLIALIYLYYVSG-----GSFEIPTWHQVPLSMLEQKILFFAFLA 220
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+ K+ + P H W+PD + A T + L I+ +L ++ LP++ +
Sbjct: 221 AFAVKVPMWPVHTWLPDAHVQAP--------TGGSIVLAAIMLKLGAYGFLRFSLPILPD 272
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 273 ASHALSGFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL----------GFF 322
Query: 801 IFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+FN + G+ +I++ F F I +L + T E+ + G+ + P A +
Sbjct: 323 MFNDMALQGGIVQMISHGFVSGAMFMCIGVLYDQM--HTREISQYGGVVNKMPRFAFFFI 380
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+F + G P T GF +F +
Sbjct: 381 LFSLANCGLPATSGFVGEFMV 401
>gi|398835062|ref|ZP_10592447.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Herbaspirillum sp. YR522]
gi|398218564|gb|EJN05068.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Herbaspirillum sp. YR522]
Length = 497
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/373 (64%), Positives = 305/373 (81%), Gaps = 1/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLI 275
Y +K WID FNI YFLG+DG+SLWF+PLTAFIT+I++L + I+K++A+YM AFLI
Sbjct: 64 YQFVEKTPWIDRFNISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGAFLI 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
LSG++IG F +LD MLFY+FFEATLIP+FII+G WGG NR YAA K FLYTL GSLLML+
Sbjct: 124 LSGIMIGVFSSLDAMLFYVFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLAGSLLMLV 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
++IYLY++S +F+I +WH L ++ +EQ LF F AFA+K+P+WP+HTWLPDAHV+AP
Sbjct: 184 ALIYLYFVSGGTFDIPTWHALPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAP 243
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GS++LAAIMLKLG YG LRFSLPI PDAS+ S+ +I LSL+++IYI L+A+VQ D+K
Sbjct: 244 TGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSSFMIFLSLVAVIYIGLVALVQQDMK 303
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KL+AYSSIAHMGFVTLG FM +++QGAI QMISH +S AMF+ IG LY+QM TR I+
Sbjct: 304 KLVAYSSIAHMGFVTLGFFMFNDMAVQGAIAQMISHGFVSGAMFMCIGVLYDQMHTRDIA 363
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P F+ FFI+FSLANC LP TSGF+GEFM+IL AVKFNF IG+L +TALI
Sbjct: 364 QYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILG 423
Query: 576 AAYSLCLSKNIIF 588
AAYSL L+K +IF
Sbjct: 424 AAYSLWLAKRVIF 436
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL++ F K +P+HTWLPD+ ++ PT S ++ AA M+ G
Sbjct: 201 WHALPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAPTGGS-IVLAAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ ALS ++F+ + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPILPDASHALSSFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + A +I +++H F +F+ G ++ + H +DI GG+ MP
Sbjct: 320 GFFMFNDMAVQGAIAQMISHGFVSGAMFMCIG-VLYDQMHTRDIAQYGGVVNKMPRFAFF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ L+ G P SGF +
Sbjct: 379 FILFSLANCGLPATSGFVGE 398
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 126/290 (43%), Gaps = 38/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + V + N ++ AA K F+ + S ML + LY ++G
Sbjct: 139 LFYVFFEATLIPMFIIVGVWGGDNRVY---AAFKLFLYTLAGSLLMLVALIYLYFVSG-- 193
Query: 661 ELQSIFNVIKLNNINCSVLA--LSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIII 714
F++ + + S+L + + + K+ + P H W+PD + G SI++
Sbjct: 194 ---GTFDIPTWHALPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAPTGGSIVL 250
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
++ KL + + R + L ++ L++ ++I + A+ Q + K+++
Sbjct: 251 AAIML---KLGAYGFL-RFSLPILPDASHALSSFMIFLSLVAVIYIGLVALVQQDMKKLV 306
Query: 775 AYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
AYSSIAHMG + +F+ ++++ + +I +F I ++ +
Sbjct: 307 AYSSIAHMGFVTLGFFMFNDMAVQGAIAQMISHGFVSGAMFMCIGVLYDQM--------- 357
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
T ++ + G+ + P A ++F + G P T GF +F +
Sbjct: 358 ------HTRDIAQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMV 401
>gi|293603931|ref|ZP_06686346.1| NADH-quinone oxidoreductase subunit M [Achromobacter piechaudii
ATCC 43553]
gi|292817768|gb|EFF76834.1| NADH-quinone oxidoreductase subunit M [Achromobacter piechaudii
ATCC 43553]
Length = 500
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/398 (59%), Positives = 312/398 (78%), Gaps = 15/398 (3%)
Query: 205 LSLVGA--------PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
LSLVGA P ++GF + +K WI+ FN+ Y LGIDG+SLWF+ LTAF
Sbjct: 43 LSLVGAFAGFLVTIPLYTGFDNTTAAMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAF 102
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
IT+I++L + I ++A+YM+AFLILSGL++G F ALDGMLFY+FFEATLIP++IIIG
Sbjct: 103 ITIIVVLAGWEVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGV 162
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG NR YAA KFFLYTLMGSLL LI+ IYL++ S SF+IL+WHQ+ + + QI +F+
Sbjct: 163 WGGPNRVYAAFKFFLYTLMGSLLTLIAFIYLWHASGGSFDILTWHQVKLGQTPQILIFVA 222
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 223 LLAAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRFSLPITPDASHSL 282
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
+ L+ITLSLI++IYI L+A++Q D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMI
Sbjct: 283 AGLMITLSLIAVIYIGLVAIIQEDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMI 342
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
SH +S AMF+ IG LY++M +R I+++GG++NV+P F+ FFI+FS+AN LP TSGF+G
Sbjct: 343 SHGFVSGAMFMCIGVLYDRMHSRRIADYGGVVNVMPRFATFFILFSMANSGLPATSGFVG 402
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
EFM+I+ AV+ NF IG+L +TALI A+YSL + K ++
Sbjct: 403 EFMVIMGAVEHNFWIGLLAATALILGASYSLWMVKRVV 440
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 206 WHQVKLGQTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIMLKLGA 264
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ +++ + I ++GL+ IIQ D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPITPDASHSLAGLMITLSLIAVIYIGLVAIIQEDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +F+ G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIG-VLYDRMHSRRIADYGGVVNVMPRFATF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FILFSMANSGLPATSGFVGE 403
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 153/349 (43%), Gaps = 42/349 (12%)
Query: 566 VLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNN 625
V+TS + AA+ L LS ++ V + L ++ L+ + + + + N
Sbjct: 114 VITSRVAQYMAAF-LILSGLMVGVFAAL----DGMLFYVFFEATLIPMYIIIGVWGGPNR 168
Query: 626 IFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLL 685
++ AA K+F+ ++ S L L+ +G ++ +KL ++ ++LL
Sbjct: 169 VY---AAFKFFLYTLMGSLLTLIAFIYLWHASGGSFDILTWHQVKLGQTPQILIFVALL- 224
Query: 686 IIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPL 741
+ K+ + P H W+PD + G SI++ ++ KL + ++ LP+
Sbjct: 225 --AAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIML---KLGAYG-----FLRFSLPI 274
Query: 742 VINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
+ +++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 275 TPDASHSLAGLMITLSLIAVIYIGLVAIIQEDMKKLVAYSSVAHMGFVTL---------- 324
Query: 798 NLIIFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
IFN+ + + +I++ F F I +L + ++ + + G+ P A
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSR--RIADYGGVVNVMPRFAT 382
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
++F + +G P T GF +F + E W+ LL ++GA
Sbjct: 383 FFILFSMANSGLPATSGFVGEFMVIMGAVE-HNFWIGLLAATALILGAS 430
>gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I subunit M [Janthinobacterium sp. Marseille]
gi|151280382|gb|ABR88792.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille]
Length = 496
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/369 (64%), Positives = 307/369 (83%), Gaps = 1/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WID FNI Y LG+DGLS+WF+ LTAFIT+ +++ + + I+K++A+YM AFLILSGL
Sbjct: 68 EKMKWIDIFNINYSLGVDGLSMWFVILTAFITIFVVIAAWEVIEKRVAQYMGAFLILSGL 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALDG+LFY+FFE+TLIP+FIIIG WGG+NR YA+IKFFLYT GSLLML++++Y
Sbjct: 128 MIGVFCALDGLLFYVFFESTLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLLMLVALLY 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S SF+IL+WH L + QI +F+ F +AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 LYFKSGHSFDILAWHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS 247
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+Y S +ITLSLI++IYI L+A+VQ D+KKL+A
Sbjct: 248 VVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQTDMKKLVA 307
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG FM +++QG I+QMISH +S AMF+ IG LY++M TR I+++GG
Sbjct: 308 YSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFLCIGVLYDRMHTRNIADYGG 367
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++NV+P F+ FF++FS+ N LP TSGF+GEFM+IL AVKFNF IG+L +TALI AAYS
Sbjct: 368 VVNVMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILGAAYS 427
Query: 580 LCLSKNIIF 588
L L+K +IF
Sbjct: 428 LWLAKRVIF 436
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL + A + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS ++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + A I +++H F +FL G ++ + H ++I + GG+ MP
Sbjct: 320 GFFMFNDMAVQGGIVQMISHGFVSGAMFLCIG-VLYDRMHTRNIADYGGVVNVMPKFAAF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ + G P SGF +
Sbjct: 379 FVLFSMGNAGLPATSGFVGE 398
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 34/211 (16%)
Query: 681 LSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIK 736
L L ++ + K+ + P H W+PD + A T + L I+ +L ++
Sbjct: 213 LIFLAFLMAFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLR 264
Query: 737 CLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
LP+ + L + L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 265 FSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTL----- 319
Query: 793 KTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILL--KNNTCNKTDELDIFIGLHQ 848
+FN + G+ +I++ F F I +L + +T N D + G+
Sbjct: 320 -----GFFMFNDMAVQGGIVQMISHGFVSGAMFLCIGVLYDRMHTRNIAD----YGGVVN 370
Query: 849 RNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A ++F AG P T GF +F +
Sbjct: 371 VMPKFAAFFVLFSMGNAGLPATSGFVGEFMV 401
>gi|423016166|ref|ZP_17006887.1| NADH:ubiquinone oxidoreductase subunit M [Achromobacter
xylosoxidans AXX-A]
gi|338780857|gb|EGP45256.1| NADH:ubiquinone oxidoreductase subunit M [Achromobacter
xylosoxidans AXX-A]
Length = 500
Score = 494 bits (1273), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/397 (58%), Positives = 313/397 (78%), Gaps = 9/397 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SL+G ++ LV P ++GF SK +K WI+ FN+ Y LG+DG+SLWF+ LTAFI
Sbjct: 44 SLVGSIAGFLVTIPLYTGFDSKTAAMQFVEKTSWIEAFNVNYHLGVDGISLWFVLLTAFI 103
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I++L + I ++++YM+AFLILSGL++G FCALDGMLFY+FFEATLIP++IIIG W
Sbjct: 104 TIIVVLAGWEVITSRVSQYMAAFLILSGLMVGVFCALDGMLFYVFFEATLIPMYIIIGVW 163
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG NR YAA KFFLYTLMGSLL L++ +YL++ S SF+IL+W Q + QI +F+
Sbjct: 164 GGPNRVYAAFKFFLYTLMGSLLTLVAFVYLWHASGGSFDILTWQQTKLGYTPQILIFVAL 223
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+ +
Sbjct: 224 LAAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHSLA 283
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
++ITLSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMIS
Sbjct: 284 GMMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMIS 343
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++NV+P F+ FFI+FS+AN LP TSGF+GE
Sbjct: 344 HGFVSGAMFMCIGVLYDRMHSRRIADYGGVVNVMPRFATFFILFSMANSGLPATSGFVGE 403
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
FM+I+ AV+ NF IG+L +TALI A+YSL + K ++
Sbjct: 404 FMVIMGAVEHNFWIGLLAATALILGASYSLWMVKRVV 440
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 206 WQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIMLKLGA 264
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ +++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPIAPDASHSLAGMMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +F+ G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIG-VLYDRMHSRRIADYGGVVNVMPRFATF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FILFSMANSGLPATSGFVGE 403
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 686 IIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPL 741
++ + K+ + P H W+PD + G SI++ ++ KL + ++ LP+
Sbjct: 223 LLAAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIML---KLGAYG-----FLRFSLPI 274
Query: 742 VINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
+ +++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 275 APDASHSLAGMMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL---------- 324
Query: 798 NLIIFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
IFN+ + + +I++ F F I +L + ++ + + G+ P A
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSR--RIADYGGVVNVMPRFAT 382
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
++F + +G P T GF +F + E W+ LL ++GA
Sbjct: 383 FFILFSMANSGLPATSGFVGEFMVIMGAVE-HNFWIGLLAATALILGAS 430
>gi|311104670|ref|YP_003977523.1| NADH-quinone oxidoreductase subunit M [Achromobacter xylosoxidans
A8]
gi|310759359|gb|ADP14808.1| NADH-quinone oxidoreductase subunit M [Achromobacter xylosoxidans
A8]
Length = 500
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/397 (58%), Positives = 312/397 (78%), Gaps = 9/397 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SL+G ++ LV P ++GF S +K WI+ FN+ Y LGIDG+S+WF+ LTAFI
Sbjct: 44 SLVGAIAGFLVTIPLYTGFDSTTAKMQFVEKTSWIEAFNVNYHLGIDGISMWFVLLTAFI 103
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I++L + I ++A+YM+AFLILSGL++G FCALDGMLFY+FFEATLIP++IIIG W
Sbjct: 104 TIIVVLAGWEVITSRVAQYMAAFLILSGLMVGVFCALDGMLFYVFFEATLIPMYIIIGVW 163
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG NR YAA KFFLYTLMGSLL L++ +YL+ +S SF+IL+W Q + QI +F+
Sbjct: 164 GGPNRVYAAFKFFLYTLMGSLLTLVAFVYLWNVSGGSFDILTWQQTKLGYTPQILIFVAL 223
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+ +
Sbjct: 224 LAAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHSLA 283
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
++ITLSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMIS
Sbjct: 284 GMMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMIS 343
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++NV+P F+ FFI+FS+AN LP TSGF+GE
Sbjct: 344 HGFVSGAMFMCIGVLYDRMHSRRIADYGGVVNVMPRFATFFILFSMANSGLPATSGFVGE 403
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
FM+I+ AV+ NF IG+L +TALI A+YSL + K ++
Sbjct: 404 FMVIMGAVEHNFWIGLLAATALILGASYSLWMVKRVV 440
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 206 WQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIMLKLGA 264
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ +++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPIAPDASHSLAGMMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +F+ G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIG-VLYDRMHSRRIADYGGVVNVMPRFATF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FILFSMANSGLPATSGFVGE 403
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 124/286 (43%), Gaps = 38/286 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ ++ S L L+ ++G F+++ L+ + +
Sbjct: 171 AAFKFFLYTLMGSLLTLVAFVYLWNVSG-----GSFDILTWQQTKLGYTPQILIFVALLA 225
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G SI++ ++ KL + ++ LP+ +
Sbjct: 226 AFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIML---KLGAYG-----FLRFSLPIAPD 277
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 278 ASHSLAGMMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL----------GFF 327
Query: 801 IFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN+ + + +I++ F F I +L + ++ + + G+ P A +
Sbjct: 328 IFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSR--RIADYGGVVNVMPRFATFFI 385
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F + +G P T GF +F + E W+ LL ++GA
Sbjct: 386 LFSMANSGLPATSGFVGEFMVIMGAVE-HNFWIGLLAATALILGAS 430
>gi|421482742|ref|ZP_15930322.1| NADH:ubiquinone oxidoreductase subunit M [Achromobacter piechaudii
HLE]
gi|400199053|gb|EJO32009.1| NADH:ubiquinone oxidoreductase subunit M [Achromobacter piechaudii
HLE]
Length = 500
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/388 (59%), Positives = 308/388 (79%), Gaps = 7/388 (1%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P ++GF + +K WI+ FN+ Y LGIDG+SLWF+ LTAFIT+I++L
Sbjct: 53 LVTIPLYTGFDNTTAAMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFITIIVVLAGW 112
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I ++A+YM+AFLILSGL++G F ALDGMLFY+FFEATLIP++IIIG WGG NR YAA
Sbjct: 113 EVITSRVAQYMAAFLILSGLMVGVFVALDGMLFYVFFEATLIPMYIIIGAWGGDNRIYAA 172
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTLMGSLL LI+ IYL++ S SF+IL+WH++ + + EQI +F+ AFA+K+P
Sbjct: 173 FKFFLYTLMGSLLTLIAFIYLWHASGGSFDILTWHKVKLGQTEQILIFVALLAAFAVKVP 232
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPD HVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+ + L+ITLSL+
Sbjct: 233 MWPVHTWLPDVHVEAPTGGSIVLAAIMLKLGAYGFLRFSLPITPDASHSLAGLMITLSLV 292
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IYI L+A++Q D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMISH +S AMF
Sbjct: 293 AVIYIGLVAIIQEDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMISHGFVSGAMF 352
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ IG LY++M +R I+++GG++NV+P F+ FFI+FS+AN LP TSGF+GEFM+I+ AV+
Sbjct: 353 MCIGVLYDRMHSRRIADYGGVVNVMPRFATFFILFSMANSGLPATSGFVGEFMVIMGAVE 412
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNII 587
NF IG+L +TALI A+YSL + K ++
Sbjct: 413 HNFWIGLLAATALILGASYSLWMVKRVV 440
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 105/200 (52%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ L T + F+ K +P+HTWLPD +E PT S ++ AA M+ G
Sbjct: 206 WHKVKLGQTEQILIFVALLAAFAVKVPMWPVHTWLPDVHVEAPTGGS-IVLAAIMLKLGA 264
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ +++ + + ++GL+ IIQ D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPITPDASHSLAGLMITLSLVAVIYIGLVAIIQEDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +F+ G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIG-VLYDRMHSRRIADYGGVVNVMPRFATF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FILFSMANSGLPATSGFVGE 403
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 130/292 (44%), Gaps = 37/292 (12%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
N I+ AA K+F+ ++ S L L+ +G ++ +KL ++ ++
Sbjct: 166 DNRIY---AAFKFFLYTLMGSLLTLIAFIYLWHASGGSFDILTWHKVKLGQTEQILIFVA 222
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCL 738
LL + K+ + P H W+PDV+ G SI++ ++ KL + ++
Sbjct: 223 LL---AAFAVKVPMWPVHTWLPDVHVEAPTGGSIVLAAIML---KLGAYG-----FLRFS 271
Query: 739 LPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT 794
LP+ + +++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 272 LPITPDASHSLAGLMITLSLVAVIYIGLVAIIQEDMKKLVAYSSVAHMGFVTL------- 324
Query: 795 SHNNLIIFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPW 852
IFN+ + + +I++ F F I +L + ++ + + G+ P
Sbjct: 325 ---GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSR--RIADYGGVVNVMPR 379
Query: 853 CALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
A ++F + +G P T GF +F + E W+ LL ++GA
Sbjct: 380 FATFFILFSMANSGLPATSGFVGEFMVIMGAVE-HNFWIGLLAATALILGAS 430
>gi|359797077|ref|ZP_09299665.1| NADH:ubiquinone oxidoreductase subunit M [Achromobacter
arsenitoxydans SY8]
gi|359364975|gb|EHK66684.1| NADH:ubiquinone oxidoreductase subunit M [Achromobacter
arsenitoxydans SY8]
Length = 500
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/397 (58%), Positives = 311/397 (78%), Gaps = 9/397 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SL+G ++ LV P ++GF S +K WI+ FN+ Y LGIDG+S+WF+ LTAFI
Sbjct: 44 SLVGAIAGFLVTIPLYTGFDSSTAAMQFVEKASWIEAFNVNYHLGIDGISMWFVLLTAFI 103
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I++L + I ++A+YM+AFLILSGL++G FCALDGMLFY+FFEATLIP++IIIG W
Sbjct: 104 TIIVVLAGWEVITSRVAQYMAAFLILSGLMVGVFCALDGMLFYVFFEATLIPMYIIIGVW 163
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG+NR YAA KFFLYTLMGSLL L++ +YL+ S SF+IL+W Q + QI +F+
Sbjct: 164 GGANRVYAAFKFFLYTLMGSLLTLVAFVYLWNASGGSFDILTWQQTKLGYTPQILIFVAL 223
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+ +
Sbjct: 224 LAAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHSLA 283
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
L+ITLSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMIS
Sbjct: 284 GLMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMIS 343
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++N +P F+ FFI+FS+AN LP TSGF+GE
Sbjct: 344 HGFVSGAMFMCIGVLYDRMHSRRIADYGGVVNTMPRFATFFILFSMANSGLPATSGFVGE 403
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
FM+I+ AV+ NF IG+L +TALI AAYSL + K ++
Sbjct: 404 FMVIMGAVEHNFWIGLLAATALILGAAYSLWMVKRVV 440
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 206 WQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIMLKLGA 264
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ +++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPIAPDASHSLAGLMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +F+ G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIG-VLYDRMHSRRIADYGGVVNTMPRFATF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FILFSMANSGLPATSGFVGE 403
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 123/286 (43%), Gaps = 38/286 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ ++ S L L+ +G F+++ L+ + +
Sbjct: 171 AAFKFFLYTLMGSLLTLVAFVYLWNASG-----GSFDILTWQQTKLGYTPQILIFVALLA 225
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G SI++ ++ KL + ++ LP+ +
Sbjct: 226 AFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIML---KLGAYG-----FLRFSLPIAPD 277
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 278 ASHSLAGLMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL----------GFF 327
Query: 801 IFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN+ + + +I++ F F I +L + ++ + + G+ P A +
Sbjct: 328 IFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSR--RIADYGGVVNTMPRFATFFI 385
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F + +G P T GF +F + E W+ LL ++GA
Sbjct: 386 LFSMANSGLPATSGFVGEFMVIMGAVE-HNFWIGLLAATALILGAA 430
>gi|422323041|ref|ZP_16404081.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
gi|317402000|gb|EFV82600.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
Length = 495
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/397 (59%), Positives = 312/397 (78%), Gaps = 9/397 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SLIG ++ LV P ++GF SK +K WI+ FN+ Y LG+DG+SLWF+ LTAFI
Sbjct: 39 SLIGSIAGFLVTIPLYTGFDSKTAAMQFVEKTSWIEAFNVNYHLGVDGISLWFVLLTAFI 98
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I++L + I ++++YM+AFLILSGL++G FCALDGMLFY+FFEATLIP++IIIG W
Sbjct: 99 TIIVVLAGWEVITSRVSQYMAAFLILSGLMVGVFCALDGMLFYVFFEATLIPMYIIIGVW 158
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG NR YAA KFFLYTLMGSLL L++ +YL+ S SF+IL+W Q + QI +F+
Sbjct: 159 GGPNRVYAAFKFFLYTLMGSLLTLVAFVYLWNASGGSFDILTWQQTKLGYTPQILIFVAL 218
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+ +
Sbjct: 219 LAAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHSLA 278
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
L+ITLSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMIS
Sbjct: 279 GLMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMIS 338
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++NV+P F+ FFI+FS+AN LP TSGF+GE
Sbjct: 339 HGFVSGAMFMCIGVLYDRMHSRRIADYGGVVNVMPRFATFFILFSMANSGLPATSGFVGE 398
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
FM+I+ AV+ NF IG+L +TALI A+YSL + K ++
Sbjct: 399 FMVIMGAVEHNFWIGLLAATALILGASYSLWMVKRVV 435
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIMLKLGA 259
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ +++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPIAPDASHSLAGLMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 319
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +F+ G ++ + H++ I + GG+ MP
Sbjct: 320 GFFIFNTAGVEGAIVQMISHGFVSGAMFMCIG-VLYDRMHSRRIADYGGVVNVMPRFATF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 379 FILFSMANSGLPATSGFVGE 398
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 123/286 (43%), Gaps = 38/286 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ ++ S L L+ +G F+++ L+ + +
Sbjct: 166 AAFKFFLYTLMGSLLTLVAFVYLWNASG-----GSFDILTWQQTKLGYTPQILIFVALLA 220
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G SI++ ++ KL + ++ LP+ +
Sbjct: 221 AFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIML---KLGAYG-----FLRFSLPIAPD 272
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 273 ASHSLAGLMITLSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL----------GFF 322
Query: 801 IFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN+ + + +I++ F F I +L + ++ + + G+ P A +
Sbjct: 323 IFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSR--RIADYGGVVNVMPRFATFFI 380
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F + +G P T GF +F + E W+ LL ++GA
Sbjct: 381 LFSMANSGLPATSGFVGEFMVIMGAVE-HNFWIGLLAATALILGAS 425
>gi|393776310|ref|ZP_10364606.1| NADH dehydrogenase subunit M [Ralstonia sp. PBA]
gi|392716699|gb|EIZ04277.1| NADH dehydrogenase subunit M [Ralstonia sp. PBA]
Length = 488
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/389 (62%), Positives = 312/389 (80%), Gaps = 8/389 (2%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P SGF + +K +WID FNI YFLG+DGLS+WFIPLTAFIT+I++L
Sbjct: 42 LVTLPLISGFDTSSAGLQFVEKVLWIDRFNIQYFLGVDGLSMWFIPLTAFITIIVVLAGW 101
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I ++A+YM+AFLILSGL++G F ALDG+LFY+FFEATLIP++IIIG WGG+NR YAA
Sbjct: 102 EVITDRVAQYMAAFLILSGLMVGVFSALDGLLFYVFFEATLIPMYIIIGVWGGANRVYAA 161
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTL+GSLLML++++YLY ++ SF I WHQ I Q+ LFI FF+AFA+K+P
Sbjct: 162 FKFFLYTLLGSLLMLVALLYLYNLTG-SFEIPQWHQAKIGMEAQVLLFIAFFMAFAVKVP 220
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+ S ++I LSLI
Sbjct: 221 MWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHLLSGVVIALSLI 280
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IYI L+A+VQ D+KKL+AYSSIAHMGFVTLG F+ I ++GAI+QMISH IS AMF
Sbjct: 281 AVIYIGLVALVQADMKKLVAYSSIAHMGFVTLGFFIFNDIGVEGAIVQMISHGFISGAMF 340
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
SIG LY+++ +R I+++GG++N +P F+ F ++F++ANC LP TSGF+GEFM+IL AVK
Sbjct: 341 FSIGVLYDRVHSRRIADYGGVVNTMPKFAAFSVLFAMANCGLPATSGFVGEFMVILGAVK 400
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
FNF IG+L +TALI AAYSL L K ++F
Sbjct: 401 FNFWIGLLAATALILGAAYSLWLVKRVVF 429
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ + + A + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKIGMEAQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHLLSGVVIALSLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV +I +++H F +F S G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNDIGVEG---AIVQMISHGFISGAMFFSIG-VLYDRVHSRRIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S++ ++ G P SGF +
Sbjct: 369 AAFSVLFAMANCGLPATSGFVGE 391
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 41/291 (14%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S ML + LY +TG+
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGANRVY---AAFKFFLYTLLGSLLMLVALLYLYNLTGSF 189
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIII 714
E+ + + + A LL I ++F K+ + P H W+PD + G SI++
Sbjct: 190 EIP------QWHQAKIGMEAQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSIVL 243
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNF 770
++ KL + ++ LP+ + +L + L++ ++I + A+ Q +
Sbjct: 244 AAIML---KLGAYG-----FLRFSLPIAPDASHLLSGVVIALSLIAVIYIGLVALVQADM 295
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIIL 828
K+++AYSSIAHMG + IFN + + +I++ F F I +
Sbjct: 296 KKLVAYSSIAHMGFVTL----------GFFIFNDIGVEGAIVQMISHGFISGAMFFSIGV 345
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L + ++ + + G+ P A ++F + G P T GF +F +
Sbjct: 346 LYDRVHSR--RIADYGGVVNTMPKFAAFSVLFAMANCGLPATSGFVGEFMV 394
>gi|17546769|ref|NP_520171.1| NADH dehydrogenase subunit M [Ralstonia solanacearum GMI1000]
gi|17429069|emb|CAD15757.1| probable transmembrane nadh dehydrogenaseI(chain m) oxidoreductase
protein [Ralstonia solanacearum GMI1000]
Length = 488
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/369 (62%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSTWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP++IIIG WGG NR YAAIKFFLYTL+GSLL L++ +Y
Sbjct: 122 MIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S +F IL WHQL ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYFHSG-TFEILQWHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + +I +SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + ++ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ +L S L LY +GT F +++ + + S+ LL I +
Sbjct: 160 AAIKFFLYTLLGSLLTLVAFLYLYFHSGT------FEILQWHQLKLSLNEQILLFIAFFM 213
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 214 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIAPD 265
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + +++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 266 ASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL----------GFF 315
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + G+ +I++ F F I +L + ++ ++ + G+ P A + +
Sbjct: 316 IFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAALSV 373
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + G P T GF +F +
Sbjct: 374 FFAMANCGLPATSGFVGEFMV 394
>gi|427401582|ref|ZP_18892654.1| proton-translocating NADH-quinone oxidoreductase, chain M [Massilia
timonae CCUG 45783]
gi|425719691|gb|EKU82623.1| proton-translocating NADH-quinone oxidoreductase, chain M [Massilia
timonae CCUG 45783]
Length = 500
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/369 (61%), Positives = 302/369 (81%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI+ FN++Y LG+DGLSLWF+PLTAFIT+I++L + I++++A+YM +FLILSGL
Sbjct: 72 EQAAWIERFNVFYRLGVDGLSLWFVPLTAFITIIVVLAAWQVIEERVAQYMGSFLILSGL 131
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALDG+LFY FFEATLIP++IIIG +GG NR YAA KFFLYT GSLL L++++Y
Sbjct: 132 MIGVFCALDGLLFYFFFEATLIPMYIIIGVFGGPNRVYAAFKFFLYTFFGSLLTLVAIVY 191
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY +++F+IL+WHQL +T EQI +FI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 192 LY-TQSQTFDILAWHQLPLTMKEQILIFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 250
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS Y + ++I LSL+++IYI L+A+VQ D+KKL+A
Sbjct: 251 VVLAAIMLKLGAYGFLRFSLPITPDASQYLAPVVIGLSLVAVIYIGLVALVQKDMKKLVA 310
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG FM + +QG ++Q ISH +S AMF+ IG LY+++ +R I+++GG
Sbjct: 311 YSSIAHMGFVTLGFFMFNDLGVQGGLMQAISHGFVSGAMFLCIGVLYDRVHSREIADYGG 370
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ F ++FS+AN LP TSGFIGEFM+IL AV+FNF GV + TALI AAYS
Sbjct: 371 VVNTMPKFAAFAVLFSMANAGLPATSGFIGEFMVILGAVEFNFWTGVASGTALILGAAYS 430
Query: 580 LCLSKNIIF 588
L + K ++F
Sbjct: 431 LWMVKRVVF 439
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 109/200 (54%), Gaps = 14/200 (7%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL + + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 204 WHQLPLTMKEQILIFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 262
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L+ +++ + + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 263 YGFLRFSLPITPDASQYLAPVVIGLSLVAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTL 322
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV + ++H F +FL G ++ + H+++I + GG+ MP
Sbjct: 323 GFFMFNDLGVQG---GLMQAISHGFVSGAMFLCIG-VLYDRVHSREIADYGGVVNTMPKF 378
Query: 197 CITSLIGLLSLVGAPFFSGF 216
+++ ++ G P SGF
Sbjct: 379 AAFAVLFSMANAGLPATSGF 398
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 36/260 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ S L I LY + T F+++ + + ++ L+ I +
Sbjct: 170 AAFKFFLYTFFGSLLTLVAIVYLYTQSQT------FDILAWHQLPLTMKEQILIFIAFFM 223
Query: 691 SF--KLGISPFHMWVPDVY----QGASII---ITLLLSTTPKLSLFVIIYRLLIKCLLPL 741
+F K+ + P H W+PD + G S++ I L L L + I + L P+
Sbjct: 224 AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASQYLAPV 283
Query: 742 VINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLII 801
VI L++ ++I + A+ Q + K+++AYSSIAHMG + +
Sbjct: 284 VIG-------LSLVAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTL----------GFFM 326
Query: 802 FNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
FN GL I++ F F I +L + ++ E+ + G+ P A ++
Sbjct: 327 FNDLGVQGGLMQAISHGFVSGAMFLCIGVLYDRVHSR--EIADYGGVVNTMPKFAAFAVL 384
Query: 860 FMFSLAGFPPTIGFYAKFFI 879
F + AG P T GF +F +
Sbjct: 385 FSMANAGLPATSGFIGEFMV 404
>gi|421891473|ref|ZP_16322273.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum
K60-1]
gi|378963146|emb|CCF99021.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum
K60-1]
Length = 488
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/369 (62%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP++IIIG WGG NR YAAIKFFLYTL+GSLL L++ +Y
Sbjct: 122 MIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + + +F IL WHQL ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LY-LHSGTFEILQWHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + +I +SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + ++ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ +L S L LY +GT F +++ + + S+ LL I +
Sbjct: 160 AAIKFFLYTLLGSLLTLVAFLYLYLHSGT------FEILQWHQLKLSLNEQILLFIAFFM 213
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 214 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIAPD 265
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + +++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 266 ASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL----------GFF 315
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + G+ +I++ F F I +L + ++ ++ + G+ P A + +
Sbjct: 316 IFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAALSV 373
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + G P T GF +F +
Sbjct: 374 FFAMANCGLPATSGFVGEFMV 394
>gi|386333051|ref|YP_006029220.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia
solanacearum Po82]
gi|334195499|gb|AEG68684.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia
solanacearum Po82]
Length = 488
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/369 (62%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP++IIIG WGG NR YAAIKFFLYTL+GSLL L++ +Y
Sbjct: 122 MIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + + +F IL WHQL ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LY-LHSGTFEILQWHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + +I +SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPITPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + ++ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPITPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ +L S L LY +GT F +++ + + S+ LL I +
Sbjct: 160 AAIKFFLYTLLGSLLTLVAFLYLYLHSGT------FEILQWHQLKLSLNEQILLFIAFFM 213
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 214 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPITPD 265
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + +++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 266 ASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL----------GFF 315
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + G+ +I++ F F I +L + ++ ++ + G+ P A + +
Sbjct: 316 IFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAALSV 373
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + G P T GF +F +
Sbjct: 374 FFAMANCGLPATSGFVGEFMV 394
>gi|83746309|ref|ZP_00943362.1| NADH-quinone oxidoreductase chain M [Ralstonia solanacearum UW551]
gi|207742747|ref|YP_002259139.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia
solanacearum IPO1609]
gi|421897884|ref|ZP_16328251.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia
solanacearum MolK2]
gi|83727059|gb|EAP74184.1| NADH-quinone oxidoreductase chain M [Ralstonia solanacearum UW551]
gi|206589090|emb|CAQ36052.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia
solanacearum MolK2]
gi|206594141|emb|CAQ61068.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia
solanacearum IPO1609]
Length = 488
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/369 (62%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP++IIIG WGG NR YAAIKFFLYTL+GSLL L++ +Y
Sbjct: 122 MIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + + +F IL WHQL ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LY-LHSGTFEILQWHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + +I +SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + ++ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ +L S L LY +GT F +++ + + S+ LL I +
Sbjct: 160 AAIKFFLYTLLGSLLTLVAFLYLYLHSGT------FEILQWHQLKLSLNEQILLFIAFFM 213
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 214 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIAPD 265
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + +++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 266 ASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL----------GFF 315
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + G+ +I++ F F I +L + ++ ++ + G+ P A + +
Sbjct: 316 IFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAALSV 373
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + G P T GF +F +
Sbjct: 374 FFAMANCGLPATSGFVGEFMV 394
>gi|300703654|ref|YP_003745256.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum
CFBP2957]
gi|299071317|emb|CBJ42635.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum
CFBP2957]
Length = 488
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/369 (61%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W++ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSSWVERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP++IIIG WGG NR YAAIKFFLYTL+GSLL L++ +Y
Sbjct: 122 MIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + + +F IL WHQL ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LY-LHSGTFEILQWHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + +I +SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQLKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + ++ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ +L S L LY +GT F +++ + + S+ LL I +
Sbjct: 160 AAIKFFLYTLLGSLLTLVAFLYLYLHSGT------FEILQWHQLKLSLNEQILLFIAFFM 213
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 214 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIAPD 265
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + +++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 266 ASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL----------GFF 315
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + G+ +I++ F F I +L + ++ ++ + G+ P A + +
Sbjct: 316 IFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAALSV 373
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + G P T GF +F +
Sbjct: 374 FFAMANCGLPATSGFVGEFMV 394
>gi|445498163|ref|ZP_21465018.1| NADH-quinone oxidoreductase subunit M [Janthinobacterium sp. HH01]
gi|444788158|gb|ELX09706.1| NADH-quinone oxidoreductase subunit M [Janthinobacterium sp. HH01]
Length = 501
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 246/405 (60%), Positives = 323/405 (79%), Gaps = 13/405 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNIYY LGIDGLSLWF+PLTAFIT+I+++ + I+K++A+YM AFLILSGL
Sbjct: 72 EKSPWIERFNIYYSLGIDGLSLWFVPLTAFITVIVVISAWQVIQKRVAQYMGAFLILSGL 131
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCA+DG+LFY FFEATLIP++IIIG WGG NR YA+ KFFLYT GSLL L+++IY
Sbjct: 132 MIGVFCAMDGLLFYFFFEATLIPMYIIIGVWGGENRVYASFKFFLYTFFGSLLTLVAIIY 191
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY +S SF+IL WH++++T EQI++FI FF+AFA+K+P++P+HTWLPD HVEAPT GS
Sbjct: 192 LYKVSGGSFDILMWHKIALTMKEQIFIFIAFFMAFAVKVPMFPVHTWLPDVHVEAPTGGS 251
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+LAAIMLKLG YG LRFSLPI PDAS+Y + +ITLSLI++IYI L+A+VQ D+KKL+A
Sbjct: 252 AVLAAIMLKLGAYGFLRFSLPIVPDASHYMAPFVITLSLIAVIYIGLVALVQKDMKKLVA 311
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +++QGAI+QMISH IS AMF+ IG LY+Q +R I+++GG
Sbjct: 312 YSSIAHMGFVTLGFFVFNAMAVQGAIVQMISHGFISGAMFLCIGVLYDQAHSRQIADYGG 371
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ FI FS+ANC LP TSGF+GEFM+IL A +FNF IG+L +TALIF AAYS
Sbjct: 372 VVNKMPKFAALFIFFSMANCGLPATSGFVGEFMVILGATQFNFWIGLLAATALIFGAAYS 431
Query: 580 LCLSKNIIF------VLGQMIMISGNNLLSIYLGLELMSLTLCVL 618
L ++K +IF + +++ ++G L LG+ L +CVL
Sbjct: 432 LWMAKRVIFGKVANHHVAELVDVNGREFL--MLGI----LAVCVL 470
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K FP+HTWLPD +E PT SA++ AA M+ G + R S P+ + S+ ++
Sbjct: 229 KVPMFPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGAYGFLRFSLPIVPDASHYMAPFVIT 287
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ I ++GL+ ++Q D+K+++AYS+++ +G++T+G V A +I +++H F
Sbjct: 288 LSLIAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTLGFFVFNAMAVQGAIVQMISHGFIS 347
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+FL G ++ + H++ I + GG+ MP + ++ G P SGF +
Sbjct: 348 GAMFLCIG-VLYDQAHSRQIADYGGVVNKMPKFAALFIFFSMANCGLPATSGFVGE 402
Score = 45.1 bits (105), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 32/198 (16%)
Query: 693 KLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN--- 744
K+ + P H W+PDV+ G++++ ++L KL + ++ LP+V +
Sbjct: 229 KVPMFPVHTWLPDVHVEAPTGGSAVLAAIML----KLGAYG-----FLRFSLPIVPDASH 279
Query: 745 -WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
++ L++ ++I + A+ Q + K+++AYSSIAHMG + +FN
Sbjct: 280 YMAPFVITLSLIAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTL----------GFFVFN 329
Query: 804 --SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ + +I++ F F I +L + ++ ++ + G+ + P A + + F
Sbjct: 330 AMAVQGAIVQMISHGFISGAMFLCIGVLYDQAHSR--QIADYGGVVNKMPKFAALFIFFS 387
Query: 862 FSLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 388 MANCGLPATSGFVGEFMV 405
>gi|300691037|ref|YP_003752032.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum
PSI07]
gi|299078097|emb|CBJ50740.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum
PSI07]
gi|344169648|emb|CCA82007.1| NADH-quinone oxidoreductase subunit M [blood disease bacterium
R229]
gi|344171802|emb|CCA84424.1| NADH-quinone oxidoreductase subunit M [Ralstonia syzygii R24]
Length = 488
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/369 (61%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP++IIIG WGG NR YAAIKFFLYTL+GSLL L++ +Y
Sbjct: 122 MIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S +F IL WHQ+ ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYFHSG-TFEILQWHQVKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + +I +SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +V+FNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVQFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQVKLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + ++ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ +L S L LY +GT F +++ + + S+ LL I +
Sbjct: 160 AAIKFFLYTLLGSLLTLVAFLYLYFHSGT------FEILQWHQVKLSLNEQILLFIAFFM 213
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 214 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIAPD 265
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + +++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 266 ASHSLAAFVIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL----------GFF 315
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + G+ +I++ F F I +L + ++ ++ + G+ P A + +
Sbjct: 316 IFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAALSV 373
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + G P T GF +F +
Sbjct: 374 FFAMANCGLPATSGFVGEFMV 394
>gi|194289171|ref|YP_002005078.1| NADH dehydrogenase subunit m [Cupriavidus taiwanensis LMG 19424]
gi|193223006|emb|CAQ69011.1| NADH:ubiquinone oxidoreductase complex I, chain M [Cupriavidus
taiwanensis LMG 19424]
Length = 488
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/371 (63%), Positives = 307/371 (82%), Gaps = 6/371 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNI+Y LG+DGLS+WF+ LTAFIT+I+++ + + I +++AEYM++FLILSGL
Sbjct: 62 EKASWIERFNIHYLLGVDGLSMWFVVLTAFITVIVVISAWEVITERVAEYMASFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALDGMLFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MVGVFCALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNKS--FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
LY NK+ F+IL WHQ ++ EQI LF+ FF+AFA+K+P+WP+HTWLPDAHVEAPT
Sbjct: 182 LY---NKTGTFDILQWHQAKLSMNEQIALFLAFFVAFAVKVPMWPVHTWLPDAHVEAPTG 238
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSV+LAAIMLKLG YG LRFSLPI PDAS+Y + IIT+SLI++IYI L+A+VQ D+KKL
Sbjct: 239 GSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKL 298
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
+AYSSIAHMGFVTLG F+ + I ++G IIQMISH IS AMF+ IG LY+++ +R I+++
Sbjct: 299 VAYSSIAHMGFVTLGFFIFSDIGVEGGIIQMISHGFISGAMFLCIGVLYDRVHSRQIADY 358
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++N +P F+ + F++ANC LP TSGF+GEFM+IL AVKFNF IG+L +TALI AA
Sbjct: 359 GGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILGAA 418
Query: 578 YSLCLSKNIIF 588
YSL + K +IF
Sbjct: 419 YSLWMVKRVIF 429
Score = 87.8 bits (216), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLSMNEQIALFLAFFVAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFSDIGVEG---GIIQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 41/291 (14%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L + LY TGT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVALLYLYNKTGT- 188
Query: 661 ELQSIFNVIKLNNINCSV---LALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII 713
F++++ + S+ +AL L V + K+ + P H W+PD + G S++
Sbjct: 189 -----FDILQWHQAKLSMNEQIAL-FLAFFVAFAVKVPMWPVHTWLPDAHVEAPTGGSVV 242
Query: 714 ---ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNF 770
I L L L + I L P +I I LI I+ IG V A+ Q +
Sbjct: 243 LAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIIT---ISLIAVIY---IGLV-ALVQADM 295
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIIL 828
K+++AYSSIAHMG + IF+ + G+ +I++ F F I +
Sbjct: 296 KKLVAYSSIAHMGFVTL----------GFFIFSDIGVEGGIIQMISHGFISGAMFLCIGV 345
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L + ++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 346 LYDRVHSR--QIADYGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|134095019|ref|YP_001100094.1| NADH dehydrogenase I subunit M [Herminiimonas arsenicoxydans]
gi|133738922|emb|CAL61969.1| NADH-quinone oxidoreductase subunit M [Herminiimonas
arsenicoxydans]
Length = 496
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/369 (63%), Positives = 303/369 (82%), Gaps = 1/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WID FNI Y LG+DGLS+WF+ LTAFIT+ +++ + I+K++ +YM AFLILSGL
Sbjct: 68 EKFKWIDIFNINYSLGVDGLSMWFVVLTAFITIFVVIAGWEVIEKRVGQYMGAFLILSGL 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALDG+LFY+FFE+TLIP+FIIIG WGG+NR YA+IKFFLYT GSLLML++++Y
Sbjct: 128 MIGVFCALDGLLFYVFFESTLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLLMLVALLY 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S SF+IL+WH L + QI +F+ F +AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 LYFKSGHSFDILAWHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS 247
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+Y S +ITLSLI++IYI L+A+VQ D+KKL+A
Sbjct: 248 VVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQKDMKKLVA 307
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG FM +++QG I QMISH +S AMF+ IG LY++M TR I+++GG
Sbjct: 308 YSSIAHMGFVTLGFFMFNDMAVQGGIAQMISHGFVSGAMFLCIGVLYDRMHTRNIADYGG 367
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ FF++FS+ N LP TSGF+GEFM+IL AV++NF IG+L +TALI AAYS
Sbjct: 368 VVNTMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVQYNFWIGLLAATALILGAAYS 427
Query: 580 LCLSKNIIF 588
L L+K ++F
Sbjct: 428 LWLAKRVLF 436
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL + A + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS ++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + A I +++H F +FL G ++ + H ++I + GG+ MP
Sbjct: 320 GFFMFNDMAVQGGIAQMISHGFVSGAMFLCIG-VLYDRMHTRNIADYGGVVNTMPKFAAF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ + G P SGF +
Sbjct: 379 FVLFSMGNAGLPATSGFVGE 398
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 37/236 (15%)
Query: 681 LSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIK 736
L L ++ + K+ + P H W+PD + A T + L I+ +L ++
Sbjct: 213 LIFLAFLMAFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLR 264
Query: 737 CLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LF 787
LP+ + L + L++ ++I + A+ Q + K+++AYSSIAHMG + +F
Sbjct: 265 FSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTLGFFMF 324
Query: 788 SIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLH 847
+ ++++ +I +F I ++ + +T N D + G+
Sbjct: 325 NDMAVQGGIAQMISHGFVSGAMFLCIGVLYD-----------RMHTRNIAD----YGGVV 369
Query: 848 QRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
P A ++F AG P T GF +F + + W+ LL ++GA
Sbjct: 370 NTMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVQ-YNFWIGLLAATALILGA 424
>gi|33592019|ref|NP_879663.1| NADH dehydrogenase subunit M [Bordetella pertussis Tohama I]
gi|384203321|ref|YP_005589060.1| NADH dehydrogenase subunit M [Bordetella pertussis CS]
gi|408416214|ref|YP_006626921.1| NADH-ubiquinone oxidoreductase subunit M [Bordetella pertussis
18323]
gi|33571663|emb|CAE41156.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella pertussis
Tohama I]
gi|332381435|gb|AEE66282.1| NADH dehydrogenase subunit M [Bordetella pertussis CS]
gi|401778384|emb|CCJ63796.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella pertussis
18323]
Length = 499
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/398 (58%), Positives = 309/398 (77%), Gaps = 9/398 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SLIG L+ LV P ++GF + +K WI+ FN+ Y LGIDG+SLWF+ LTAFI
Sbjct: 43 SLIGALAGFLVTIPLYTGFEAGTAQMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFI 102
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I++ I ++A+YM+AFLILSGL++G F ALDGMLFY+FFEATLIP++IIIG W
Sbjct: 103 TIIVVGAGWQVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVW 162
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG NR YAA KFFLYTL+GSLL L++ +YL+ +S SF+I +WHQ + Q+ +F+
Sbjct: 163 GGPNRVYAAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVAL 222
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+ +
Sbjct: 223 LAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGLA 282
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
L+I LSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMIS
Sbjct: 283 GLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGLEGAIVQMIS 342
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++NV+P F FF++FS+AN LP TSGF+GE
Sbjct: 343 HGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGFVGE 402
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++I+ AV++NF IG+LT+TALI A+YSL + K + F
Sbjct: 403 FLVIMGAVEYNFWIGLLTATALILGASYSLWMLKRVAF 440
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 205 WHQTKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 263
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L+ +++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 264 YGFLRFSLPIAPDASHGLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 323
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 324 GFFIFNTAGLEGAIVQMISHGFVSGAMFLCIG-VLYDRMHSRRIADYGGVVNVMPRFVTF 382
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 383 FVLFSMANSGLPATSGFVGE 402
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 155/350 (44%), Gaps = 44/350 (12%)
Query: 566 VLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNN 625
V+TS + AA+ L LS ++ V + L ++ L+ + + + + N
Sbjct: 113 VITSRVAQYMAAF-LILSGLMVGVFAAL----DGMLFYVFFEATLIPMYIIIGVWGGPNR 167
Query: 626 IFSSEAAIKYFILGILSSGFMLYGISILYGITG-TLELQSIFNVIKLNNINCSVLALSLL 684
++ AA K+F+ +L S L L+ ++G + ++Q+ ++ KL ++ ++LL
Sbjct: 168 VY---AAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQT-WHQTKLGYTPQVLIFVALL 223
Query: 685 LIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLP 740
+ K+ + P H W+PD + A T + L I+ +L ++ LP
Sbjct: 224 ---AAFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLP 272
Query: 741 LVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSH 796
+ + +++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 273 IAPDASHGLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL--------- 323
Query: 797 NNLIIFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCA 854
IFN+ + + +I++ F F I +L + ++ + + G+ P
Sbjct: 324 -GFFIFNTAGLEGAIVQMISHGFVSGAMFLCIGVLYDRMHSR--RIADYGGVVNVMPRFV 380
Query: 855 LIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
++F + +G P T GF +F + E W+ LL ++GA
Sbjct: 381 TFFVLFSMANSGLPATSGFVGEFLVIMGAVE-YNFWIGLLTATALILGAS 429
>gi|312796889|ref|YP_004029811.1| NADH-quinone oxidoreductase subunit M [Burkholderia rhizoxinica HKI
454]
gi|312168664|emb|CBW75667.1| NADH-quinone oxidoreductase chain M (EC 1.6.5.3) [Burkholderia
rhizoxinica HKI 454]
Length = 498
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/399 (57%), Positives = 309/399 (77%), Gaps = 10/399 (2%)
Query: 199 TSLIGLL--SLVGAPFFSGFYSKDKK------KIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
T+LIG + +V P SGF + WI+ FNI Y LG+DGLS+WF+ LTAF
Sbjct: 37 TALIGAVISFIVTLPLISGFDASTSALQFVEVAPWIERFNITYHLGVDGLSMWFVVLTAF 96
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
IT+I+++ + I ++A+YM+AFLILSGL++G F A DGMLFY+FFEATLIP+++IIG
Sbjct: 97 ITVIVVIAGWEVITDRVAQYMAAFLILSGLMVGVFSAADGMLFYVFFEATLIPMYLIIGV 156
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG NR YAA KFFLYTL GSLLML+++IYLY ++SF + +WH L + Q+ LF+
Sbjct: 157 WGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQSQSFELSAWHALPLGMTPQVLLFVA 215
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 216 FFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHML 275
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
+ +ITLSL+++IYI +A+VQ D+KKL+AYSSI HMGFVTLG F+ +++ ++GAI+QMI
Sbjct: 276 APAVITLSLVAVIYIGFVALVQADMKKLVAYSSITHMGFVTLGFFLFSQLGVEGAIVQMI 335
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
SH +S AMF+ IG LY++M +R I+++GG++N +P F+ I+FS+ANC LPGTSGF+G
Sbjct: 336 SHGFVSGAMFLCIGVLYDRMHSRQIADYGGVVNTMPKFAALAILFSMANCGLPGTSGFVG 395
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
EFM+IL+AVKFNF IG+L + LI AAY+L + K + F
Sbjct: 396 EFMVILAAVKFNFWIGLLAAITLILGAAYTLWMVKRVYF 434
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL +T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 199 WHALPLGMTPQVLLFVAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 257
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ ++ + + ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 258 YGFLRFSLPIAPDASHMLAPAVITLSLVAVIYIGFVALVQADMKKLVAYSSITHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 318 GFFLFSQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVVNTMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 374 AALAILFSMANCGLPGTSGFVGE 396
Score = 48.5 bits (114), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 123/291 (42%), Gaps = 41/291 (14%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + N ++ AA K+F+ + S ML + LY + +
Sbjct: 138 LFYVFFEATLIPMYLIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTQSQSF 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII--- 713
EL S ++ + L +L ++ L + K+ + P H W+PD + G S++
Sbjct: 195 EL-SAWHALPLGMTPQVLLFVAFFL---AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA 250
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
I L L L + I L P VI L++ ++I A+ Q + K++
Sbjct: 251 IMLKLGAYGFLRFSLPIAPDASHMLAPAVIT-------LSLVAVIYIGFVALVQADMKKL 303
Query: 774 IAYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
+AYSSI HMG + LFS + ++ + +I +F I ++ +
Sbjct: 304 VAYSSITHMGFVTLGFFLFSQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRM-------- 355
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ + G+ P A + ++F + G P T GF +F +
Sbjct: 356 -------HSRQIADYGGVVNTMPKFAALAILFSMANCGLPGTSGFVGEFMV 399
>gi|33597899|ref|NP_885542.1| NADH dehydrogenase subunit M [Bordetella parapertussis 12822]
gi|33602804|ref|NP_890364.1| NADH dehydrogenase subunit M [Bordetella bronchiseptica RB50]
gi|410421279|ref|YP_006901728.1| NADH-ubiquinone oxidoreductase subunit M [Bordetella bronchiseptica
MO149]
gi|410473868|ref|YP_006897149.1| NADH-ubiquinone oxidoreductase subunit M [Bordetella parapertussis
Bpp5]
gi|412341862|ref|YP_006970617.1| NADH-ubiquinone oxidoreductase subunit M [Bordetella bronchiseptica
253]
gi|427815820|ref|ZP_18982884.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
1289]
gi|427818369|ref|ZP_18985432.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
D445]
gi|427825768|ref|ZP_18992830.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
Bbr77]
gi|33574328|emb|CAE38664.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella parapertussis]
gi|33577246|emb|CAE35803.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
RB50]
gi|408443978|emb|CCJ50675.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella parapertussis
Bpp5]
gi|408448574|emb|CCJ60257.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
MO149]
gi|408771696|emb|CCJ56500.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
253]
gi|410566820|emb|CCN24389.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
1289]
gi|410569369|emb|CCN17469.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
D445]
gi|410591033|emb|CCN06129.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica
Bbr77]
Length = 500
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/398 (58%), Positives = 309/398 (77%), Gaps = 9/398 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SLIG L+ LV P ++GF + +K WI+ FN+ Y LGIDG+SLWF+ LTAFI
Sbjct: 44 SLIGALAGFLVTIPLYTGFDAGTAQMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFI 103
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I++ I ++A+YM+AFLILSGL++G F ALDGMLFY+FFEATLIP++IIIG W
Sbjct: 104 TIIVVGAGWQVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVW 163
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG NR YAA KFFLYTL+GSLL L++ +YL+ +S SF+I +WHQ + Q+ +F+
Sbjct: 164 GGPNRVYAAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVAL 223
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+ +
Sbjct: 224 LAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGLA 283
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
L+I LSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMIS
Sbjct: 284 GLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGLEGAIVQMIS 343
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++NV+P F FF++FS+AN LP TSGF+GE
Sbjct: 344 HGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGFVGE 403
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++I+ AV++NF IG+LT+TALI A+YSL + K + F
Sbjct: 404 FLVIMGAVEYNFWIGLLTATALILGASYSLWMLKRVAF 441
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 206 WHQTKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 264
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L+ +++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPIAPDASHGLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGLEGAIVQMISHGFVSGAMFLCIG-VLYDRMHSRRIADYGGVVNVMPRFVTF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FVLFSMANSGLPATSGFVGE 403
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 155/350 (44%), Gaps = 44/350 (12%)
Query: 566 VLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNN 625
V+TS + AA+ L LS ++ V + L ++ L+ + + + + N
Sbjct: 114 VITSRVAQYMAAF-LILSGLMVGVFAAL----DGMLFYVFFEATLIPMYIIIGVWGGPNR 168
Query: 626 IFSSEAAIKYFILGILSSGFMLYGISILYGITG-TLELQSIFNVIKLNNINCSVLALSLL 684
++ AA K+F+ +L S L L+ ++G + ++Q+ ++ KL ++ ++LL
Sbjct: 169 VY---AAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQT-WHQTKLGYTPQVLIFVALL 224
Query: 685 LIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLP 740
+ K+ + P H W+PD + A T + L I+ +L ++ LP
Sbjct: 225 ---AAFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLP 273
Query: 741 LVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSH 796
+ + +++ L++ ++I + AI Q + K+++AYSS+AHMG +
Sbjct: 274 IAPDASHGLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL--------- 324
Query: 797 NNLIIFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCA 854
IFN+ + + +I++ F F I +L + ++ + + G+ P
Sbjct: 325 -GFFIFNTAGLEGAIVQMISHGFVSGAMFLCIGVLYDRMHSR--RIADYGGVVNVMPRFV 381
Query: 855 LIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
++F + +G P T GF +F + E W+ LL ++GA
Sbjct: 382 TFFVLFSMANSGLPATSGFVGEFLVIMGAVE-YNFWIGLLTATALILGAS 430
>gi|163855999|ref|YP_001630297.1| NADH dehydrogenase subunit M [Bordetella petrii DSM 12804]
gi|163259727|emb|CAP42028.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella petrii]
Length = 500
Score = 484 bits (1247), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/399 (58%), Positives = 306/399 (76%), Gaps = 15/399 (3%)
Query: 205 LSLVGA--------PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
LSLVGA P ++GF + +K WI+ FN+ Y LGIDG+SLWF+ LTAF
Sbjct: 43 LSLVGALAGFVVTIPLYTGFDASTAAMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAF 102
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
IT+I++L + I ++A+YM+AFLILSGL++G F ALDG+LFY+FFEATLIP++IIIG
Sbjct: 103 ITIIVVLAGWEVITSRVAQYMAAFLILSGLMVGVFAALDGLLFYVFFEATLIPMYIIIGV 162
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG NR YAA KFFLYTL+GSLL L++ IYL+ S SF+I +WHQ+ + Q+ +F+
Sbjct: 163 WGGPNRVYAAFKFFLYTLLGSLLTLVAFIYLWNASGGSFDIQTWHQVKLGYTPQVLIFVA 222
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 223 LLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSL 282
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
+ L+I LSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMI
Sbjct: 283 AGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMI 342
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
SH +S AMF IG LY++M +R I+++GG+INV+P F FF++FS+AN LP TSGF+G
Sbjct: 343 SHGFVSGAMFFCIGVLYDRMHSRRIADYGGVINVMPRFVTFFVLFSMANSGLPATSGFVG 402
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
EFM+I+ AV+ NF IG+L +TALI A+YSL + K + F
Sbjct: 403 EFMVIMGAVEHNFWIGLLAATALILGASYSLWMVKRVAF 441
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 206 WHQVKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 264
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ +++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPIAPDASHSLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +F G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFFCIG-VLYDRMHSRRIADYGGVINVMPRFVTF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FVLFSMANSGLPATSGFVGE 403
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 36/285 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITG-TLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA K+F+ +L S L L+ +G + ++Q+ ++ +KL ++ ++LL
Sbjct: 171 AAFKFFLYTLLGSLLTLVAFIYLWNASGGSFDIQT-WHQVKLGYTPQVLIFVALL---AA 226
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINW 745
+ K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 227 FAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIAPDA 278
Query: 746 QK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLII 801
+++ L++ ++I + AI Q + K+++AYSS+AHMG + I
Sbjct: 279 SHSLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL----------GFFI 328
Query: 802 FNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
FN+ + + +I++ F F I +L + ++ + + G+ P ++
Sbjct: 329 FNTAGVEGAIVQMISHGFVSGAMFFCIGVLYDRMHSR--RIADYGGVINVMPRFVTFFVL 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
F + +G P T GF +F + E W+ LL ++GA
Sbjct: 387 FSMANSGLPATSGFVGEFMVIMGAVE-HNFWIGLLAATALILGAS 430
>gi|187477553|ref|YP_785577.1| NADH dehydrogenase subunit M [Bordetella avium 197N]
gi|115422139|emb|CAJ48663.1| NADH dehydrogenase I chain M [Bordetella avium 197N]
Length = 500
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/404 (57%), Positives = 311/404 (76%), Gaps = 12/404 (2%)
Query: 197 CIT---SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFI 245
C+T SLIG ++ LV P ++GF +K WI+ FN+ Y LG+DG+S+WF+
Sbjct: 38 CLTRGLSLIGAVAGFLVTIPLYTGFDKTTAAMQFVEKASWIESFNVNYHLGVDGISVWFV 97
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
LTAFIT+I++ + I ++ +YM+AFLILSGL++G F ALDG+LFY+FFEATLIP++
Sbjct: 98 LLTAFITIIVVAAGWEVITNRVPQYMAAFLILSGLMVGVFSALDGLLFYVFFEATLIPMY 157
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
II+G WGG NR YAA KFFLYTLMGSLL L++ +YL+ +S SF+IL+W Q + QI
Sbjct: 158 IIVGVWGGPNRVYAAFKFFLYTLMGSLLTLVAFVYLWNVSGGSFDILTWQQTKLGYTPQI 217
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
+FI AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PD
Sbjct: 218 LIFIALLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPD 277
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
AS+ S L+I LSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GA
Sbjct: 278 ASHSLSGLMIALSLIAVIYIGLVAIVQEDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGA 337
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
I+QMISH +S AMF+ IG LY++M +R I+++GG++NV+P F+ FF++FS+AN LP T
Sbjct: 338 IVQMISHGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFATFFVLFSMANSGLPAT 397
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+I+ AV+ NF +G+L +TALI A+YSL + K ++F
Sbjct: 398 SGFVGEFMVIMGAVEHNFWVGLLAATALILGASYSLWMVKRVVF 441
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 206 WQQTKLGYTPQILIFIALLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 264
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +LS +++ + I ++GL+ I+Q D+K+++AYS+++ +G++T+
Sbjct: 265 YGFLRFSLPIAPDASHSLSGLMIALSLIAVIYIGLVAIVQEDMKKLVAYSSVAHMGFVTL 324
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 325 GFFIFNTAGVEGAIVQMISHGFVSGAMFLCIG-VLYDRMHSRRIADYGGVVNVMPRFATF 383
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 384 FVLFSMANSGLPATSGFVGE 403
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 134/316 (42%), Gaps = 41/316 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + V + N ++ AA K+F+ ++ S L L+ ++G
Sbjct: 144 LFYVFFEATLIPMYIIVGVWGGPNRVY---AAFKFFLYTLMGSLLTLVAFVYLWNVSG-- 198
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVYQGASIIITLLL 718
F+++ L+ I + + K+ + P H W+PD + A
Sbjct: 199 ---GSFDILTWQQTKLGYTPQILIFIALLAAFAVKVPMWPVHTWLPDAHVEAP------- 248
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + +++ L++ ++I + AI Q +
Sbjct: 249 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSGLMIALSLIAVIYIGLVAIVQEDM 307
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC--DSGLFYIITYIFAILGAFGVIIL 828
K+++AYSS+AHMG + IFN+ + + +I++ F F I +
Sbjct: 308 KKLVAYSSVAHMGFVTL----------GFFIFNTAGVEGAIVQMISHGFVSGAMFLCIGV 357
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L + ++ + + G+ P A ++F + +G P T GF +F + E
Sbjct: 358 LYDRMHSR--RIADYGGVVNVMPRFATFFVLFSMANSGLPATSGFVGEFMVIMGAVE-HN 414
Query: 889 IWLLLLIIMCSLIGAK 904
W+ LL ++GA
Sbjct: 415 FWVGLLAATALILGAS 430
>gi|134296421|ref|YP_001120156.1| NADH dehydrogenase subunit M [Burkholderia vietnamiensis G4]
gi|387902781|ref|YP_006333120.1| NADH-ubiquinone oxidoreductase subunit M [Burkholderia sp. KJ006]
gi|134139578|gb|ABO55321.1| NADH dehydrogenase subunit M [Burkholderia vietnamiensis G4]
gi|387577673|gb|AFJ86389.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia sp. KJ006]
Length = 496
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/401 (57%), Positives = 312/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P +GF S ++ WI+ FNI Y LG+DG+S+WF+ LT
Sbjct: 36 LALIGSLLGLA--VTLPLITGFDSSTAALQFVEQSTWIERFNISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQIMLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+SIG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLSIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF IG + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIGFGAAFTLILGAAYTLWMYKRVYF 433
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQIMLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLSIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWE-VITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ +L I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQIMLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 LHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|452124082|ref|ZP_21936666.1| NADH:ubiquinone oxidoreductase subunit M [Bordetella holmesii F627]
gi|452127467|ref|ZP_21940048.1| NADH:ubiquinone oxidoreductase subunit M [Bordetella holmesii H558]
gi|451923312|gb|EMD73453.1| NADH:ubiquinone oxidoreductase subunit M [Bordetella holmesii F627]
gi|451926747|gb|EMD76877.1| NADH:ubiquinone oxidoreductase subunit M [Bordetella holmesii H558]
Length = 495
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/404 (56%), Positives = 311/404 (76%), Gaps = 12/404 (2%)
Query: 197 CIT---SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFI 245
C+T SLIG ++ LV P ++GF +K WI+ FN+ Y LG+DG+S+WF+
Sbjct: 33 CLTRGLSLIGAVAGFLVTIPLYTGFDKTTAAMQFVEKASWIESFNVNYHLGVDGISVWFV 92
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
LTAF+T+I++ + I ++++YM+AFLILSGL++G F ALDG+LFY+FFEATLIP++
Sbjct: 93 LLTAFVTIIVVAAGWEVITNRVSQYMAAFLILSGLMVGVFSALDGLLFYVFFEATLIPMY 152
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
II+G WGG NR YAA KFFLYTLMGSLL L++ +YL++ S SF+IL+W Q + QI
Sbjct: 153 IIVGVWGGPNRVYAAFKFFLYTLMGSLLTLVAFVYLWHASGGSFDILTWQQTKLGYTPQI 212
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
+F+ AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PD
Sbjct: 213 LIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPD 272
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
AS+ S ++I LSL+++ YI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GA
Sbjct: 273 ASHSLSGMMIALSLVAVTYIGLVAIVQEDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGA 332
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
I+QMISH +S AMF+ IG LY++M +R I+++GG+INV+P F+ FF++FS+AN LP T
Sbjct: 333 IVQMISHGFVSGAMFLCIGVLYDRMHSRRIADYGGVINVMPRFATFFVLFSMANSGLPAT 392
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+I+ AV+ NF +G+L +TALI A+YSL + K ++F
Sbjct: 393 SGFVGEFMVIMGAVEHNFWVGLLAATALILGASYSLWMVKRVVF 436
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +LS +++ + + ++GL+ I+Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPIAPDASHSLSGMMIALSLVAVTYIGLVAIVQEDMKKLVAYSSVAHMGFVTL 319
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 320 GFFIFNTAGVEGAIVQMISHGFVSGAMFLCIG-VLYDRMHSRRIADYGGVINVMPRFATF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 379 FVLFSMANSGLPATSGFVGE 398
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 64/316 (20%), Positives = 132/316 (41%), Gaps = 41/316 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + V + N ++ AA K+F+ ++ S L L+ +G
Sbjct: 139 LFYVFFEATLIPMYIIVGVWGGPNRVY---AAFKFFLYTLMGSLLTLVAFVYLWHASG-- 193
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVYQGASIIITLLL 718
F+++ L+ + + + K+ + P H W+PD + A
Sbjct: 194 ---GSFDILTWQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVEAP------- 243
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + +++ L++ ++ + AI Q +
Sbjct: 244 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSGMMIALSLVAVTYIGLVAIVQEDM 302
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC--DSGLFYIITYIFAILGAFGVIIL 828
K+++AYSS+AHMG + IFN+ + + +I++ F F I +
Sbjct: 303 KKLVAYSSVAHMGFVTL----------GFFIFNTAGVEGAIVQMISHGFVSGAMFLCIGV 352
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L + ++ + + G+ P A ++F + +G P T GF +F + E
Sbjct: 353 LYDRMHSR--RIADYGGVINVMPRFATFFVLFSMANSGLPATSGFVGEFMVIMGAVE-HN 409
Query: 889 IWLLLLIIMCSLIGAK 904
W+ LL ++GA
Sbjct: 410 FWVGLLAATALILGAS 425
>gi|113867082|ref|YP_725571.1| NADH dehydrogenase subunit M [Ralstonia eutropha H16]
gi|113525858|emb|CAJ92203.1| NADH dehydrogenase chain M [Ralstonia eutropha H16]
Length = 488
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/371 (63%), Positives = 305/371 (82%), Gaps = 6/371 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNI Y LG+DG+S+WF+ LTAFIT+I+++ + + I +++AEYM++FLILSGL
Sbjct: 62 EKASWIERFNINYLLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FC LDGMLFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL GSLL LI+++Y
Sbjct: 122 MVGVFCTLDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLTLIALLY 181
Query: 340 LYYISNKS--FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
LY NK+ F+IL WHQ ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT
Sbjct: 182 LY---NKTGTFDILQWHQAKLSMNEQIALFIAFFVAFAVKVPMWPVHTWLPDAHVEAPTG 238
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSV+LAAIMLKLG YG LRFSLPI PDAS+Y + IIT+SLI++IYI L+A+VQ D+KKL
Sbjct: 239 GSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKL 298
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
+AYSSIAHMGFVTLG F+ + I ++G I+QMISH IS AMF+ IG LY+++ +R I+++
Sbjct: 299 VAYSSIAHMGFVTLGFFIFSDIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADY 358
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++N +P F+ + F++ANC LP TSGF+GEFM+IL AVKF+F IG+L +TALIF AA
Sbjct: 359 GGVVNTMPKFAALAVFFAMANCGLPATSGFVGEFMVILGAVKFDFWIGLLAATALIFGAA 418
Query: 578 YSLCLSKNIIF 588
YSL + K +IF
Sbjct: 419 YSLWMVKRVIF 429
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLSMNEQIALFIAFFVAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFSDIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 369 AALAVFFAMANCGLPATSGFVGE 391
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 126/290 (43%), Gaps = 39/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ + S L + LY TGT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLAGSLLTLIALLYLYNKTGT- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVY----QGASII- 713
F++++ + S+ L I V + K+ + P H W+PD + G S++
Sbjct: 189 -----FDILQWHQAKLSMNEQIALFIAFFVAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL 243
Query: 714 --ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFK 771
I L L L + I L P +I I LI I+ IG V A+ Q + K
Sbjct: 244 AAIMLKLGAYGFLRFSLPIAPDASHYLAPFIIT---ISLIAVIY---IGLV-ALVQADMK 296
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILL 829
+++AYSSIAHMG + IF+ + G+ +I++ F F I +L
Sbjct: 297 KLVAYSSIAHMGFVTL----------GFFIFSDIGVEGGIVQMISHGFISGAMFLCIGVL 346
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 347 YDRVHSR--QIADYGGVVNTMPKFAALAVFFAMANCGLPATSGFVGEFMV 394
>gi|339325149|ref|YP_004684842.1| NADH-quinone oxidoreductase chain 13 [Cupriavidus necator N-1]
gi|338165306|gb|AEI76361.1| NADH-quinone oxidoreductase chain 13 [Cupriavidus necator N-1]
Length = 488
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/371 (63%), Positives = 305/371 (82%), Gaps = 6/371 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNI Y LG+DG+S+WF+ LTAFIT+I+++ + + I +++AEYM++FLILSGL
Sbjct: 62 EKANWIERFNINYLLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FC LDGMLFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL GSLL LI+++Y
Sbjct: 122 MVGVFCTLDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLTLIALLY 181
Query: 340 LYYISNKS--FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
LY NK+ F+IL WHQ ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT
Sbjct: 182 LY---NKTGTFDILQWHQAKLSMNEQIALFIAFFVAFAVKVPMWPVHTWLPDAHVEAPTG 238
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSV+LAAIMLKLG YG LRFSLPI PDAS+Y + IIT+SLI++IYI L+A+VQ D+KKL
Sbjct: 239 GSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKL 298
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
+AYSSIAHMGFVTLG F+ + I ++G I+QMISH IS AMF+ IG LY+++ +R I+++
Sbjct: 299 VAYSSIAHMGFVTLGFFIFSDIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADY 358
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++N +P F+ + F++ANC LP TSGF+GEFM+IL AVKF+F IG+L +TALIF AA
Sbjct: 359 GGVVNTMPKFAALAVFFAMANCGLPATSGFVGEFMVILGAVKFDFWIGLLAATALIFGAA 418
Query: 578 YSLCLSKNIIF 588
YSL + K +IF
Sbjct: 419 YSLWMVKRVIF 429
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLSMNEQIALFIAFFVAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFSDIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 369 AALAVFFAMANCGLPATSGFVGE 391
Score = 47.8 bits (112), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 126/290 (43%), Gaps = 39/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ + S L + LY TGT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLAGSLLTLIALLYLYNKTGT- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVY----QGASII- 713
F++++ + S+ L I V + K+ + P H W+PD + G S++
Sbjct: 189 -----FDILQWHQAKLSMNEQIALFIAFFVAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL 243
Query: 714 --ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFK 771
I L L L + I L P +I I LI I+ IG V A+ Q + K
Sbjct: 244 AAIMLKLGAYGFLRFSLPIAPDASHYLAPFIIT---ISLIAVIY---IGLV-ALVQADMK 296
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILL 829
+++AYSSIAHMG + IF+ + G+ +I++ F F I +L
Sbjct: 297 KLVAYSSIAHMGFVTL----------GFFIFSDIGVEGGIVQMISHGFISGAMFLCIGVL 346
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 347 YDRVHSR--QIADYGGVVNTMPKFAALAVFFAMANCGLPATSGFVGEFMV 394
>gi|94309884|ref|YP_583094.1| NADH:ubiquinone oxidoreductase subunit M [Cupriavidus metallidurans
CH34]
gi|93353736|gb|ABF07825.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Cupriavidus
metallidurans CH34]
Length = 488
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/371 (62%), Positives = 308/371 (83%), Gaps = 6/371 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI+ FNI Y LG+DG+S+WF+ LTAFIT+I+++ + + I +++AEYM++FLILSGL
Sbjct: 62 EQATWIERFNIQYHLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LDG+LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MVGVFSSLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNK--SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
LY NK SF+IL+WHQ +T EQI +F+ FF+AFA+K+P+WP+HTWLPDAHVEAPT
Sbjct: 182 LY---NKTGSFDILTWHQAKLTMNEQIAIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTG 238
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSV+LAAIMLKLG YG LRFSLPI PDAS+Y + IIT+SLI++IYI L+A+VQ D+KKL
Sbjct: 239 GSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKL 298
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
+AYSSIAHMGFVTLG F+ +I I+G IIQMISH +S AMF+ IG LY+++ +R I+++
Sbjct: 299 VAYSSIAHMGFVTLGFFIFNEIGIEGGIIQMISHGFVSGAMFLCIGVLYDRVHSRQIADY 358
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++NV+P F+ + F++ANC LP TSGF+GEFM+IL AVKFNF IG+L +TALIF AA
Sbjct: 359 GGVVNVMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALIFGAA 418
Query: 578 YSLCLSKNIIF 588
YSL + K +IF
Sbjct: 419 YSLWMVKRVIF 429
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L + + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLTMNEQIAIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGIEG---GIIQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 35/288 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L + LY TG+
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVALLYLYNKTGSF 189
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII--- 713
++ + N ++ L + + K+ + P H W+PD + G S++
Sbjct: 190 DILTWHQAKLTMNEQIAIF----LAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
I L L L + I L P +I I LI I+ IG V A+ Q + K++
Sbjct: 246 IMLKLGAYGFLRFSLPIAPDASHYLAPFIIT---ISLIAVIY---IGLV-ALVQADMKKL 298
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSSIAHMG + IFN + G+ +I++ F F I +L +
Sbjct: 299 VAYSSIAHMGFVTL----------GFFIFNEIGIEGGIIQMISHGFVSGAMFLCIGVLYD 348
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 349 RVHSR--QIADYGGVVNVMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|73540676|ref|YP_295196.1| NADH dehydrogenase subunit M [Ralstonia eutropha JMP134]
gi|72118089|gb|AAZ60352.1| NADH dehydrogenase subunit M [Ralstonia eutropha JMP134]
Length = 488
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/369 (62%), Positives = 304/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNI Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++AEYM++FLILSG+
Sbjct: 62 EKSSWIERFNIQYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLILSGV 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALDGMLFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MVGVFCALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY +F IL WHQ ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYS-KTGTFEILQWHQAKLSLNEQIALFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + IIT+SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFIITISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I I+G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGIEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +V+FNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVEFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLSLNEQIALFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLAAFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGIEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 48.9 bits (115), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S L + LY TGT F +++ + S+ L I +
Sbjct: 160 AAFKFFLYTLLGSLLTLVALLYLYSKTGT------FEILQWHQAKLSLNEQIALFIAFFM 213
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 214 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIAPD 265
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
L + +++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 266 ASHSLAAFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL----------GFF 315
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + G+ +I++ F F I +L + ++ ++ + G+ P A + +
Sbjct: 316 IFNEIGIEGGIVQMISHGFISGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAALSV 373
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + G P T GF +F +
Sbjct: 374 FFAMANCGLPATSGFVGEFMV 394
>gi|374365445|ref|ZP_09623535.1| NADH:ubiquinone oxidoreductase subunit M [Cupriavidus basilensis
OR16]
gi|373103018|gb|EHP44049.1| NADH:ubiquinone oxidoreductase subunit M [Cupriavidus basilensis
OR16]
Length = 488
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/369 (63%), Positives = 301/369 (81%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNI Y LG+DG+S+WF+ LTAFIT+I+++ + I +++AEYM+AFLILSG+
Sbjct: 62 EKSEWIERFNINYHLGVDGISMWFVVLTAFITVIVVISAWQVITERVAEYMAAFLILSGV 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALDGMLFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MVGVFCALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY +F IL WHQ ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYS-KTGTFEILEWHQAKLSMNEQIALFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ + IIT+SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSMAAFIITISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I I+G IIQMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGIEGGIIQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL AVKFNF IG+L +TALI AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLSMNEQIALFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSMAAFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGIEG---GIIQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 48.9 bits (115), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 128/289 (44%), Gaps = 37/289 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L + LY TGT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVALLYLYSKTGTF 189
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
E+ ++ KL+ L ++ + + K+ + P H W+PD + A T
Sbjct: 190 EILE-WHQAKLSMNEQIALFIAFFM---AFAVKVPMWPVHTWLPDAHVEAP--------T 237
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKR 772
+ L I+ +L ++ LP+ + ++ +++ ++I + A+ Q + K+
Sbjct: 238 GGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSMAAFIITISLIAVIYIGLVALVQADMKK 297
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLK 830
++AYSSIAHMG + IFN + G+ +I++ F F I +L
Sbjct: 298 LVAYSSIAHMGFVTL----------GFFIFNEIGIEGGIIQMISHGFISGAMFLCIGVLY 347
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 348 DRVHSR--QIADYGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|430805958|ref|ZP_19433073.1| NADH:ubiquinone oxidoreductase subunit M [Cupriavidus sp. HMR-1]
gi|429501786|gb|ELA00113.1| NADH:ubiquinone oxidoreductase subunit M [Cupriavidus sp. HMR-1]
Length = 488
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/371 (62%), Positives = 308/371 (83%), Gaps = 6/371 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI+ FNI Y LG+DG+S+WF+ LTAFIT+I+++ + + I +++AEYM++FLILSGL
Sbjct: 62 EQANWIERFNIQYHLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LDG+LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MVGVFSSLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNK--SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
LY NK SF+IL+WHQ +T EQI +F+ FF+AFA+K+P+WP+HTWLPDAHVEAPT
Sbjct: 182 LY---NKTGSFDILTWHQAKLTMNEQIAIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTG 238
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSV+LAAIMLKLG YG LRFSLPI PDAS+Y + IIT+SLI++IYI L+A+VQ D+KKL
Sbjct: 239 GSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKL 298
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
+AYSSIAHMGFVTLG F+ +I I+G IIQMISH +S AMF+ IG LY+++ +R I+++
Sbjct: 299 VAYSSIAHMGFVTLGFFIFNEIGIEGGIIQMISHGFVSGAMFLCIGVLYDRVHSRQIADY 358
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++NV+P F+ + F++ANC LP TSGF+GEFM+IL AVKFNF IG+L +TALIF AA
Sbjct: 359 GGVVNVMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALIFGAA 418
Query: 578 YSLCLSKNIIF 588
YSL + K +IF
Sbjct: 419 YSLWMVKRVIF 429
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L + + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLTMNEQIAIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGIEG---GIIQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 48.1 bits (113), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 123/288 (42%), Gaps = 35/288 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L + LY TG+
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVALLYLYNKTGSF 189
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII--- 713
++ + N ++ L + + K+ + P H W+PD + G S++
Sbjct: 190 DILTWHQAKLTMNEQIAIF----LAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
I L L L + I L P +I +++ ++I + A+ Q + K++
Sbjct: 246 IMLKLGAYGFLRFSLPIAPDASHYLAPFIIT-------ISLIAVIYIGLVALVQADMKKL 298
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSSIAHMG + IFN + G+ +I++ F F I +L +
Sbjct: 299 VAYSSIAHMGFVTL----------GFFIFNEIGIEGGIIQMISHGFVSGAMFLCIGVLYD 348
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 349 RVHSR--QIADYGGVVNVMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|115352326|ref|YP_774165.1| NADH dehydrogenase subunit M [Burkholderia ambifaria AMMD]
gi|115282314|gb|ABI87831.1| NADH dehydrogenase subunit M [Burkholderia ambifaria AMMD]
Length = 496
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/401 (57%), Positives = 310/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P +GF S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGLA--VTIPLITGFDSSTAALQFVEKSTWIERFDIAYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAIIQ
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIIQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 LHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|332285005|ref|YP_004416916.1| monovalent cation/H+ antiporter subunit A [Pusillimonas sp. T7-7]
gi|330428958|gb|AEC20292.1| putative monovalent cation/H+ antiporter subunit A [Pusillimonas
sp. T7-7]
Length = 495
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/403 (56%), Positives = 311/403 (77%), Gaps = 9/403 (2%)
Query: 195 ITCITSLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIP 246
+T + SL+G ++ LV P + GF +K WI+ F + Y LGIDG+S+WF+
Sbjct: 34 LTRVLSLLGSVAGFLVTLPLYFGFNPDTADMQFVEKASWIETFAVNYHLGIDGISIWFVL 93
Query: 247 LTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFI 305
LTAFIT+I++L + I ++++YM+AFLILSGL++G F +LDGMLFY+FFEATLIP+++
Sbjct: 94 LTAFITIIVVLAGWEVITSRVSQYMAAFLILSGLMVGVFSSLDGMLFYVFFEATLIPMYL 153
Query: 306 IIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIW 365
IIG WGG NR YAA KFFLYTLMGSLL LI+ IYL++ ++ SF+I +WH+L + Q
Sbjct: 154 IIGVWGGPNRVYAAFKFFLYTLMGSLLTLIAFIYLWHAADGSFDIQTWHELPLGMTAQTL 213
Query: 366 LFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDA 425
+FI F AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDA
Sbjct: 214 IFIALFAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDA 273
Query: 426 SYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAI 485
S+ + ++I LSLI++IYI L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI
Sbjct: 274 SHSLAGIVIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGMEGAI 333
Query: 486 IQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+QMISH +S AMF+ IG LY+++ TR I ++GG+INV+P F+ FF++FS+AN LP TS
Sbjct: 334 VQMISHGFVSGAMFLCIGVLYDRLHTRRIDDYGGVINVMPRFATFFLLFSMANAGLPATS 393
Query: 546 GFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
GF+GEF +I+ AV++N+ IG+L +TALI A+YSL + K + F
Sbjct: 394 GFVGEFTVIMGAVQYNYWIGLLAATALILGASYSLWMYKRVAF 436
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W++ PL +TA F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WHELPLGMTAQTLIFIALFAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 259
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ I++ + I ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPIAPDASHSLAGIVIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 319
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +I +++H F +FL G ++ + H + I + GG+ MP
Sbjct: 320 GFFIFNTAGMEGAIVQMISHGFVSGAMFLCIG-VLYDRLHTRRIDDYGGVINVMPRFATF 378
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
L+ ++ G P SGF +
Sbjct: 379 FLLFSMANAGLPATSGFVGE 398
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 140/317 (44%), Gaps = 43/317 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYG-ISILYGITGT 659
L ++ L+ + L + + N ++ AA K+F+ ++ S L I + + G+
Sbjct: 139 LFYVFFEATLIPMYLIIGVWGGPNRVY---AAFKFFLYTLMGSLLTLIAFIYLWHAADGS 195
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLL 717
++Q+ + + + A +L+ I + +F K+ + P H W+PD + A
Sbjct: 196 FDIQT------WHELPLGMTAQTLIFIALFAAFAVKVPMWPVHTWLPDAHVEAP------ 243
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYN 769
T + L I+ +L ++ LP+ + I++ L++ ++I + AI Q +
Sbjct: 244 --TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAGIVIALSLIAVIYIGLVAIVQDD 301
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC--DSGLFYIITYIFAILGAFGVII 827
K+++AYSS+AHMG + IFN+ + + +I++ F F I
Sbjct: 302 MKKLVAYSSVAHMGFVTL----------GFFIFNTAGMEGAIVQMISHGFVSGAMFLCIG 351
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+L + T +D + G+ P A ++F + AG P T GF +F + +
Sbjct: 352 VLYDRL--HTRRIDDYGGVINVMPRFATFFLLFSMANAGLPATSGFVGEFTVIMGAVQ-Y 408
Query: 888 KIWLLLLIIMCSLIGAK 904
W+ LL ++GA
Sbjct: 409 NYWIGLLAATALILGAS 425
>gi|78067034|ref|YP_369803.1| NADH dehydrogenase subunit M [Burkholderia sp. 383]
gi|77967779|gb|ABB09159.1| NADH dehydrogenase subunit M [Burkholderia sp. 383]
Length = 496
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/401 (57%), Positives = 310/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SL+GL V P +GF S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSLLGLA--VTIPLITGFDSSTAALQFVEKSTWIERFDIAYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TETHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAIIQ
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQSDMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q+D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQSDMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIIQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTETHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQSDMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|254247669|ref|ZP_04940990.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia cenocepacia PC184]
gi|124872445|gb|EAY64161.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia cenocepacia PC184]
Length = 496
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/401 (57%), Positives = 310/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I +L+GL V P +GF S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGALLGLA--VTIPLITGFDSSTAALQFVEKSTWIERFDIAYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TETHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAIIQ
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIIQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTETHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|53718859|ref|YP_107845.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei K96243]
gi|53725803|ref|YP_103422.1| NADH dehydrogenase subunit M [Burkholderia mallei ATCC 23344]
gi|67642180|ref|ZP_00440940.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenasei, chain m)
(ndh-1, chain m) [Burkholderia mallei GB8 horse 4]
gi|76812146|ref|YP_332857.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 1710b]
gi|121600753|ref|YP_992481.1| NADH dehydrogenase subunit M [Burkholderia mallei SAVP1]
gi|124386385|ref|YP_001026716.1| NADH dehydrogenase subunit M [Burkholderia mallei NCTC 10229]
gi|126439650|ref|YP_001058350.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 668]
gi|126448901|ref|YP_001079999.1| NADH dehydrogenase subunit M [Burkholderia mallei NCTC 10247]
gi|126451700|ref|YP_001065589.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 1106a]
gi|134283893|ref|ZP_01770589.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 305]
gi|167000356|ref|ZP_02266174.1| NADH dehydrogenase I, M subunit [Burkholderia mallei PRL-20]
gi|167718858|ref|ZP_02402094.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei DM98]
gi|167737866|ref|ZP_02410640.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 14]
gi|167815049|ref|ZP_02446729.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 91]
gi|167823465|ref|ZP_02454936.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 9]
gi|167845017|ref|ZP_02470525.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei B7210]
gi|167893558|ref|ZP_02480960.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 7894]
gi|167902004|ref|ZP_02489209.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei NCTC 13177]
gi|167910240|ref|ZP_02497331.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 112]
gi|167918273|ref|ZP_02505364.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei BCC215]
gi|217419996|ref|ZP_03451502.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 576]
gi|226195338|ref|ZP_03790927.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei Pakistan
9]
gi|237811594|ref|YP_002896045.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei MSHR346]
gi|242317262|ref|ZP_04816278.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1106b]
gi|254175572|ref|ZP_04882232.1| NADH dehydrogenase I, M subunit [Burkholderia mallei ATCC 10399]
gi|254181175|ref|ZP_04887772.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
1655]
gi|254190538|ref|ZP_04897045.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254195205|ref|ZP_04901634.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
S13]
gi|254202098|ref|ZP_04908461.1| NADH dehydrogenase I, M subunit [Burkholderia mallei FMH]
gi|254207428|ref|ZP_04913778.1| NADH dehydrogenase I, M subunit [Burkholderia mallei JHU]
gi|254261203|ref|ZP_04952257.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
1710a]
gi|254298545|ref|ZP_04965997.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
406e]
gi|254359850|ref|ZP_04976120.1| NADH dehydrogenase I, M subunit [Burkholderia mallei 2002721280]
gi|386862382|ref|YP_006275331.1| NADH-ubiquinone oxidoreductase subunit M [Burkholderia pseudomallei
1026b]
gi|403518016|ref|YP_006652149.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei BPC006]
gi|418389906|ref|ZP_12967725.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
354a]
gi|418538019|ref|ZP_13103647.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
1026a]
gi|418541515|ref|ZP_13106994.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
1258a]
gi|418547759|ref|ZP_13112898.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
1258b]
gi|418553941|ref|ZP_13118741.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
354e]
gi|52209273|emb|CAH35218.1| NADH dehydrogenase I chain M [Burkholderia pseudomallei K96243]
gi|52429226|gb|AAU49819.1| NADH dehydrogenase I, M subunit [Burkholderia mallei ATCC 23344]
gi|76581599|gb|ABA51074.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1710b]
gi|121229563|gb|ABM52081.1| NADH dehydrogenase I, M subunit [Burkholderia mallei SAVP1]
gi|124294405|gb|ABN03674.1| NADH dehydrogenase I, M subunit [Burkholderia mallei NCTC 10229]
gi|126219143|gb|ABN82649.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
668]
gi|126225342|gb|ABN88882.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1106a]
gi|126241771|gb|ABO04864.1| NADH dehydrogenase I, M subunit [Burkholderia mallei NCTC 10247]
gi|134244682|gb|EBA44780.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 305]
gi|147746345|gb|EDK53422.1| NADH dehydrogenase I, M subunit [Burkholderia mallei FMH]
gi|147751322|gb|EDK58389.1| NADH dehydrogenase I, M subunit [Burkholderia mallei JHU]
gi|148029090|gb|EDK86995.1| NADH dehydrogenase I, M subunit [Burkholderia mallei 2002721280]
gi|157808386|gb|EDO85556.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
406e]
gi|157938213|gb|EDO93883.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|160696616|gb|EDP86586.1| NADH dehydrogenase I, M subunit [Burkholderia mallei ATCC 10399]
gi|169651953|gb|EDS84646.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
S13]
gi|184211713|gb|EDU08756.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
1655]
gi|217397300|gb|EEC37316.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 576]
gi|225932540|gb|EEH28538.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei Pakistan
9]
gi|237504615|gb|ACQ96933.1| NADH-quinone oxidoreductase, m subunit [Burkholderia pseudomallei
MSHR346]
gi|238523276|gb|EEP86715.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenasei, chain m)
(ndh-1, chain m) [Burkholderia mallei GB8 horse 4]
gi|242140501|gb|EES26903.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1106b]
gi|243063690|gb|EES45876.1| NADH dehydrogenase I, M subunit [Burkholderia mallei PRL-20]
gi|254219892|gb|EET09276.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei
1710a]
gi|385348779|gb|EIF55375.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
1026a]
gi|385357745|gb|EIF63782.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
1258a]
gi|385359898|gb|EIF65845.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
1258b]
gi|385370888|gb|EIF76110.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
354e]
gi|385375898|gb|EIF80632.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
354a]
gi|385659510|gb|AFI66933.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia pseudomallei
1026b]
gi|403073659|gb|AFR15239.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei BPC006]
Length = 496
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SL GL V P +GF S ++ WI+ FNI Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSLAGLA--VTIPLITGFDSSTAALQFVEQSTWIERFNISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + I + +++Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAGWEVITENVSQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I Q+ LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQVLLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ ++I+LSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FFAPVVISLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV+FNF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQFNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFFAPVVISLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 56/270 (20%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML + LY T + +L + N ++ LL I L
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQNAKIAMTPQVLLFIAFFL 217
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLL-------------LSTTPKLSLFVIIY 731
+F K+ + P H W+PD + G S+++ + L TP S F
Sbjct: 218 AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHF---- 273
Query: 732 RLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
P+VI+ L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 274 ------FAPVVIS-------LSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL---- 316
Query: 792 IKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQR 849
IFN + + +I++ F F I +L + ++ ++ + G+
Sbjct: 317 ------GFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSR--QIADYGGVVNV 368
Query: 850 NPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A M+F + G P T GF +F +
Sbjct: 369 MPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|319943360|ref|ZP_08017642.1| NADH-quinone oxidoreductase subunit M [Lautropia mirabilis ATCC
51599]
gi|319743175|gb|EFV95580.1| NADH-quinone oxidoreductase subunit M [Lautropia mirabilis ATCC
51599]
Length = 499
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/401 (56%), Positives = 310/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ + SL+G V P ++GF ++K WI+ I Y LGIDGLS+W + LT
Sbjct: 42 LALLGSLVGFA--VTIPLYTGFDRTTAALQFVERKPWIESLGIEYSLGIDGLSVWLVLLT 99
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AFIT+++++ + IK ++ +Y+ AFLILSGL+IG F A DGMLFY+FFEATLIP++III
Sbjct: 100 AFITIVVVIAGWEVIKDRVHQYLGAFLILSGLMIGVFAAADGMLFYVFFEATLIPMYIII 159
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL+GSLL ++++IYLY + + SF IL+WH+L +T EQ+ +F
Sbjct: 160 GVWGGPNRVYAAFKFFLYTLLGSLLTMVAIIYLY-LQSGSFEILAWHRLPLTLHEQVLIF 218
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ F +AFA+KIP+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG Y LR SLPI PDAS+
Sbjct: 219 VAFLLAFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYAFLRLSLPIAPDASH 278
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ L+ITLSL+++IYI L+A+VQ D+KKL+AYSSIAHMGFVTLG FM + +QGA++Q
Sbjct: 279 ELAWLMITLSLVAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFMFNETGMQGAVVQ 338
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
M+SH ++ AMF+ IG LY+++ TR I+++GG+IN +P F+ F++FS+AN LP TSGF
Sbjct: 339 MVSHGFVAGAMFLCIGVLYDRLHTRQIADYGGVINRMPKFAALFLLFSMANAGLPATSGF 398
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEF++IL AV+F+F IG+L +TALI+ A YSL + K ++F
Sbjct: 399 VGEFLVILGAVQFDFWIGLLAATALIWGAGYSLWMYKRVVF 439
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 108/200 (54%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL + + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 204 WHRLPLTLHEQVLIFVAFLLAFAVKIPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 262
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R+S P+ ++ L+ +++ + + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 263 YAFLRLSLPIAPDASHELAWLMITLSLVAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTL 322
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + ++ +++H F +FL G ++ + H + I + GG+ MP
Sbjct: 323 GFFMFNETGMQGAVVQMVSHGFVAGAMFLCIG-VLYDRLHTRQIADYGGVINRMPKFAAL 381
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
L+ ++ G P SGF +
Sbjct: 382 FLLFSMANAGLPATSGFVGE 401
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 120/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S + I LY +G+ F ++ + + ++ L+ + L
Sbjct: 170 AAFKFFLYTLLGSLLTMVAIIYLYLQSGS------FEILAWHRLPLTLHEQVLIFVAFLL 223
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G S+++ ++ KL + ++ LP+ +
Sbjct: 224 AFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAAIML---KLGAYA-----FLRLSLPIAPD 275
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+++ L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 276 ASHELAWLMITLSLVAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTL----------GFF 325
Query: 801 IFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+FN + ++++ F F I +L + T ++ + G+ R P A + +
Sbjct: 326 MFNETGMQGAVVQMVSHGFVAGAMFLCIGVLYDRL--HTRQIADYGGVINRMPKFAALFL 383
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+F + AG P T GF +F +
Sbjct: 384 LFSMANAGLPATSGFVGEFLV 404
>gi|107023176|ref|YP_621503.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia AU 1054]
gi|116690258|ref|YP_835881.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia HI2424]
gi|170733597|ref|YP_001765544.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia MC0-3]
gi|206560691|ref|YP_002231456.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia J2315]
gi|421867923|ref|ZP_16299575.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia cenocepacia
H111]
gi|444359643|ref|ZP_21160940.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia BC7]
gi|444369275|ref|ZP_21169036.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia
K56-2Valvano]
gi|105893365|gb|ABF76530.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia AU 1054]
gi|116648347|gb|ABK08988.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia HI2424]
gi|169816839|gb|ACA91422.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia cenocepacia MC0-3]
gi|198036733|emb|CAR52633.1| NADH dehydrogenase I chain M [Burkholderia cenocepacia J2315]
gi|358071854|emb|CCE50453.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia cenocepacia
H111]
gi|443599350|gb|ELT67639.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia
K56-2Valvano]
gi|443601600|gb|ELT69737.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia BC7]
Length = 496
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 310/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I +L+GL V P +GF S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGALLGLA--VTIPLITGFDSSTAALQFVEKSTWIERFDIAYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TETHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAIIQ
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIIQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTETHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|171316315|ref|ZP_02905536.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria MEX-5]
gi|171098541|gb|EDT43342.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria MEX-5]
Length = 496
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P +GF S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGLA--VTIPLITGFDSSTAALQFVEKSTWIERFDISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASQ 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASQFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASQF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 LHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|167562190|ref|ZP_02355106.1| NADH dehydrogenase subunit M [Burkholderia oklahomensis EO147]
gi|167569435|ref|ZP_02362309.1| NADH dehydrogenase subunit M [Burkholderia oklahomensis C6786]
Length = 496
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 308/401 (76%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SL GL V P +GF S ++ WI+ FNI Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSLAGLA--VTIPLITGFDSSTAALQFVEQTTWIERFNITYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + I + +++Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAGWEVITEHVSQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I Q+ LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIEMTPQVLLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ ++I LSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FFAPVVIALSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV+FNF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQFNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + + +T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIEMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFFAPVVIALSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 114/259 (44%), Gaps = 34/259 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML + LY T + +L + N I + L + +
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLATWQNA----KIEMTPQVLLFIAFFLAF 219
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 220 AVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPITPDAS 271
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ +++ L++ ++I + A+ Q + K+++AYSSIAHMG + IF
Sbjct: 272 HFFAPVVIALSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL----------GFFIF 321
Query: 803 NS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
N + + +I++ F F I +L + ++ ++ + G+ P A M+F
Sbjct: 322 NQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSR--QIADYGGVVNVMPKFAAFAMLF 379
Query: 861 MFSLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 380 SMANCGLPGTSGFVGEFMV 398
>gi|299066345|emb|CBJ37529.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum
CMR15]
Length = 488
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/369 (62%), Positives = 304/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP++IIIG WGG NR YAAIKFFLYTL+GSLL L++++Y
Sbjct: 122 MIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S +F IL WHQ+ ++ EQI LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYFHSG-TFEILQWHQVKLSMNEQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI P AS+ S II +SLI++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPGASHSLSAFIIAISLIAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I ++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIVDYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL AVKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQVKLSMNEQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +LS I+ I I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPGASHSLSAFIIAISLIAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIVDYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 41/291 (14%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AAIK+F+ +L S L + LY +GT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAIKFFLYTLLGSLLTLVALLYLYFHSGT- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
F +++ + + S+ LL I L+F K+ + P H W+PD + A
Sbjct: 189 -----FEILQWHQVKLSMNEQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAP------- 236
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVI----NWQKILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + ++ +++ ++I + A+ Q +
Sbjct: 237 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPGASHSLSAFIIAISLIAVIYIGLVALVQADM 295
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIIL 828
K+++AYSSIAHMG + IFN + G+ +I++ F I GA + I
Sbjct: 296 KKLVAYSSIAHMGFVTL----------GFFIFNEIGVEGGIVQMISHGF-ISGAMFLCIG 344
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ + + +D + G+ P A + + F + G P T GF +F +
Sbjct: 345 VLYDRVHSRQIVD-YGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|170698121|ref|ZP_02889201.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria IOP40-10]
gi|170136979|gb|EDT05227.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria IOP40-10]
Length = 496
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL GL V P +GF S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLFGLA--VTIPLITGFDSSTAALQFVEKSTWIERFDISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAIIQ
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIIQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|149927553|ref|ZP_01915807.1| NADH dehydrogenase subunit M [Limnobacter sp. MED105]
gi|149823826|gb|EDM83052.1| NADH dehydrogenase subunit M [Limnobacter sp. MED105]
Length = 493
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/385 (58%), Positives = 303/385 (78%), Gaps = 8/385 (2%)
Query: 211 PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P + GF + +K WI+ F Y LG+DGLS+WF+ LTA IT+ +++ + + I
Sbjct: 51 PLYFGFDTSTAQLQFVEKLPWIEAFGASYGLGVDGLSVWFVILTALITVFVVVAAWEVIT 110
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
+K+A+YM+AFLILSGL++G F A DG+LFY+FFEATLIP++II+G WGG NR YAA KFF
Sbjct: 111 EKVAQYMAAFLILSGLMVGVFTATDGLLFYVFFEATLIPMYIIVGVWGGPNRIYAAFKFF 170
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTL+GSLL L+++IYL + S +F I +WH+L + EQI +F+ F +AFA+K+P+WP+
Sbjct: 171 LYTLLGSLLTLVAIIYLQFQSG-TFEIAAWHKLPLDMTEQILIFLAFLMAFAVKVPMWPV 229
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFS+PI PDAS+ + +ITLSLI+++Y
Sbjct: 230 HTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSMPIAPDASHELAGFMITLSLIAVVY 289
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I ++A+VQ D+KKL+AYSSIAHMGFVTLG FM +++QGAIIQMISH +S AMFI IG
Sbjct: 290 IGVVALVQKDMKKLVAYSSIAHMGFVTLGFFMFQDLAVQGAIIQMISHGFVSGAMFICIG 349
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY+++ +R I+ +GG++N +P F+ FF++F++AN LP TSGF+GEFM+IL AVK+NF
Sbjct: 350 VLYDRVHSREIAAYGGVVNTMPKFAAFFLLFAMANAGLPATSGFVGEFMVILGAVKYNFW 409
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
IG+L +T LIF AAYSL + K ++F
Sbjct: 410 IGLLAATTLIFGAAYSLWMYKRVVF 434
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 8/203 (3%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVT 81
I W+ PL +T + FL + K +P+HTWLPD+ +E PT S ++ AA M+
Sbjct: 196 IAAWHKLPLDMTEQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLK 254
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S+ ++ + I ++G++ ++Q D+K+++AYS+++ +G+
Sbjct: 255 LGAYGFLRFSMPIAPDASHELAGFMITLSLIAVVYIGVVALVQKDMKKLVAYSSIAHMGF 314
Query: 140 MTVGLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
+T+G + A +I +++H F +F+ G ++ + H+++I GG+ MP
Sbjct: 315 VTLGFFMFQDLAVQGAIIQMISHGFVSGAMFICIG-VLYDRVHSREIAAYGGVVNTMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
L+ ++ G P SGF +
Sbjct: 374 AAFFLLFAMANAGLPATSGFVGE 396
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 128/287 (44%), Gaps = 33/287 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + V + N I+ AA K+F+ +L S L I L +GT
Sbjct: 138 LFYVFFEATLIPMYIIVGVWGGPNRIY---AAFKFFLYTLLGSLLTLVAIIYLQFQSGTF 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
E+ + ++ + L+ ++ L+ L+ + K+ + P H W+PD + A T
Sbjct: 195 EIAA-WHKLPLDMTEQILIFLAFLM---AFAVKVPMWPVHTWLPDAHVEAP--------T 242
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKR 772
+ L I+ +L ++ +P+ + ++ L++ +++ V A+ Q + K+
Sbjct: 243 GGSVVLAAIMLKLGAYGFLRFSMPIAPDASHELAGFMITLSLIAVVYIGVVALVQKDMKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
++AYSSIAHMG + + + + +I++ F F I +L +
Sbjct: 303 LVAYSSIAHMGFVTLGFFMFQDL--------AVQGAIIQMISHGFVSGAMFICIGVLYDR 354
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + AG P T GF +F +
Sbjct: 355 VHSR--EIAAYGGVVNTMPKFAAFFLLFAMANAGLPATSGFVGEFMV 399
>gi|402565967|ref|YP_006615312.1| NADH dehydrogenase subunit M [Burkholderia cepacia GG4]
gi|402247164|gb|AFQ47618.1| NADH dehydrogenase subunit M [Burkholderia cepacia GG4]
Length = 496
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 310/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P +GF S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGLA--VTIPLITGFDSSTAALQFVEKSTWIERFDIAYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVISAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFS+PI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSMPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAIIQ
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQSDMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q+D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSMPITPDASHFLAPVVITLSLIAVIYIGLVAMVQSDMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIIQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 56/270 (20%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML + LY T + +L + N ++ LL I L
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQNAKIAMTPQILLFIAFFL 217
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLL-------------STTPKLSLFVIIY 731
+F K+ + P H W+PD + G S+++ ++ TP S F
Sbjct: 218 AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSMPITPDASHF---- 273
Query: 732 RLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
L P+VI L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 274 ------LAPVVIT-------LSLIAVIYIGLVAMVQSDMKKLVAYSSIAHMGFVTL---- 316
Query: 792 IKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQR 849
IFN + + +I++ F F I +L + ++ ++ + G+
Sbjct: 317 ------GFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDRLHSR--QIADYGGVVNV 368
Query: 850 NPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A M+F + G P T GF +F +
Sbjct: 369 MPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|254251873|ref|ZP_04945191.1| NADH dehydrogenase subunit M [Burkholderia dolosa AUO158]
gi|124894482|gb|EAY68362.1| NADH dehydrogenase subunit M [Burkholderia dolosa AUO158]
Length = 496
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P +GF S + WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGLA--VTIPLITGFDSSTAALQFVEHSTWIERFDISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TETHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTETHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|416942149|ref|ZP_11934615.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia sp. TJI49]
gi|325524290|gb|EGD02403.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia sp. TJI49]
Length = 496
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P +GF S + WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGLA--VTIPLITGFDSSTAALQFVEHSTWIERFDISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|424776525|ref|ZP_18203506.1| NADH:ubiquinone oxidoreductase subunit M [Alcaligenes sp. HPC1271]
gi|422888345|gb|EKU30734.1| NADH:ubiquinone oxidoreductase subunit M [Alcaligenes sp. HPC1271]
Length = 495
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/385 (57%), Positives = 304/385 (78%), Gaps = 7/385 (1%)
Query: 211 PFFSGFY--SKDKKKI----WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P ++GF + D + + WID F + Y LG+DG+S+WF+ LTAFIT+I++L IK
Sbjct: 52 PLYTGFNLGTADMQFVELAPWIDAFKVNYHLGVDGISMWFVLLTAFITVIVVLAGWQVIK 111
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
++A+YM AFLILSGL++G F ALDG+LFY+FFEATLIP+++IIG WGG NR YA++KFF
Sbjct: 112 NRVAQYMGAFLILSGLMVGVFAALDGLLFYVFFEATLIPMYLIIGIWGGPNRVYASVKFF 171
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTL+GSLL LI+ IYL+ +S +F+IL+WH++ + Q+ +F F+AFA+K+P+WP+
Sbjct: 172 LYTLLGSLLTLIAFIYLWNVSGGTFDILTWHKVPLDYTTQVLIFAALFMAFAVKVPMWPV 231
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS + +II LSL+++IY
Sbjct: 232 HTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQGLAGIIIALSLVAVIY 291
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMISH +S AMF+ IG
Sbjct: 292 IGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFVFNTTGMEGAIMQMISHGFVSGAMFLCIG 351
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY+++ +R I+++GG++ V+P F FF++FS+AN LPGTSGFIGEF +I+ AV++NF
Sbjct: 352 VLYDRLHSRQIADYGGVVKVMPRFVTFFVLFSMANSGLPGTSGFIGEFTVIMGAVEYNFW 411
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
IG+LT+TALI A+YSL + K + F
Sbjct: 412 IGLLTATALITGASYSLWMLKRVAF 436
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL T + F + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WHKVPLDYTTQVLIFAALFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L+ II+ + + ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPIAPDASQGLAGIIIALSLVAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
G V + +I +++H F +FL G ++ + H++ I + GG+ K MP
Sbjct: 320 GFFVFNTTGMEGAIMQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVKVMP 373
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 137/314 (43%), Gaps = 37/314 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N +++S +K+F+ +L S L L+ ++G
Sbjct: 139 LFYVFFEATLIPMYLIIGIWGGPNRVYAS---VKFFLYTLLGSLLTLIAFIYLWNVSG-- 193
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
F+++ + + L+ + ++F K+ + P H W+PD + A
Sbjct: 194 ---GTFDILTWHKVPLDYTTQVLIFAALFMAFAVKVPMWPVHTWLPDAHVEAP------- 243
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + + I++ L++ ++I + AI Q +
Sbjct: 244 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQGLAGIIIALSLVAVIYIGLVAIVQDDM 302
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
K+++AYSS+AHMG + T+ + + +I++ F F I +L
Sbjct: 303 KKLVAYSSVAHMGFVTLGFFVFNTT--------GMEGAIMQMISHGFVSGAMFLCIGVLY 354
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
+ ++ ++ + G+ + P ++F + +G P T GF +F + E W
Sbjct: 355 DRLHSR--QIADYGGVVKVMPRFVTFFVLFSMANSGLPGTSGFIGEFTVIMGAVE-YNFW 411
Query: 891 LLLLIIMCSLIGAK 904
+ LL + GA
Sbjct: 412 IGLLTATALITGAS 425
>gi|172061197|ref|YP_001808849.1| NADH dehydrogenase subunit M [Burkholderia ambifaria MC40-6]
gi|171993714|gb|ACB64633.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria MC40-6]
Length = 496
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P + F S +K WI+ F+I Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGLA--VTIPLITDFDSSTAALQFVEKSTWIERFDISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAIIQ
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIIQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 LHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|332526759|ref|ZP_08402861.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
gi|332111162|gb|EGJ11194.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
Length = 491
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 218/365 (59%), Positives = 292/365 (80%), Gaps = 1/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ FN+ Y LG+DGLS+WF+PLTAFIT+I+++ I ++ Y+ AFL+LSGL++G
Sbjct: 67 WIERFNVNYHLGVDGLSVWFVPLTAFITVIVVIAGWQVITDRVPLYLGAFLVLSGLMVGV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A DG+LFY+FFEATLIP++IIIG WGG+ R YAA KFFLYTL+GSLLML++++YLYY
Sbjct: 127 FSAADGLLFYVFFEATLIPMYIIIGVWGGARRVYAAFKFFLYTLLGSLLMLVAVVYLYYQ 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF I WH+L +T Q LF+ FF AF++K+P+WP+HTWLPDAHVEAPT GSV+LA
Sbjct: 187 SGGSFEIQDWHKLPLTLTAQTLLFVAFFAAFSVKVPMWPVHTWLPDAHVEAPTGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG LRFSLPI PDA+ ++ +IITLSLI+++YI L+A+VQ D+KKL+AYSSI
Sbjct: 247 AIMLKLGAYGFLRFSLPIAPDAAREYAWVIITLSLIAVVYIGLVALVQRDMKKLVAYSSI 306
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ ++ + GAI+QMISH +S AMF+ IG LY+++ +R IS +GG++N
Sbjct: 307 AHMGFVTLGFFIFNELGVTGAIVQMISHGFVSGAMFLCIGVLYDRVHSREISAYGGVVNT 366
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++F++ANC LPGT+GF+GE+M+IL AVK NF + L +T LIF AAY+L +
Sbjct: 367 MPKFAAFAVLFAMANCGLPGTAGFVGEWMVILGAVKHNFWVAGLAATTLIFGAAYTLWMV 426
Query: 584 KNIIF 588
K + F
Sbjct: 427 KRVYF 431
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL +TA F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 196 WHKLPLTLTAQTLLFVAFFAAFSVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + + +I+ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSLPIAPDAAREYAWVIITLSLIAVVYIGLVALVQRDMKKLVAYSSIAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV+ +I +++H F +FL G ++ + H+++I GG+ MP
Sbjct: 315 GFFIFNELGVTG---AIVQMISHGFVSGAMFLCIG-VLYDRVHSREISAYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P +GF +
Sbjct: 371 AAFAVLFAMANCGLPGTAGFVGE 393
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 115/257 (44%), Gaps = 29/257 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ +L S ML + LY +G F + + + ++ A +LL +
Sbjct: 161 AAFKFFLYTLLGSLLMLVAVVYLYYQSG-----GSFEIQDWHKLPLTLTAQTLLFVAFFA 215
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
S K+ + P H W+PD + G S+++ ++ KL + + R +
Sbjct: 216 AFSVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIML---KLGAYGFL-RFSLPIAPDAARE 271
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ +++ L++ +++ + A+ Q + K+++AYSSIAHMG + IFN
Sbjct: 272 YAWVIITLSLIAVVYIGLVALVQRDMKKLVAYSSIAHMGFVTL----------GFFIFNE 321
Query: 805 --CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F I +L + ++ E+ + G+ P A ++F
Sbjct: 322 LGVTGAIVQMISHGFVSGAMFLCIGVLYDRVHSR--EISAYGGVVNTMPKFAAFAVLFAM 379
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF ++ +
Sbjct: 380 ANCGLPGTAGFVGEWMV 396
>gi|161524216|ref|YP_001579228.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC 17616]
gi|189351027|ref|YP_001946655.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC 17616]
gi|221211747|ref|ZP_03584726.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD1]
gi|421478363|ref|ZP_15926126.1| NADH dehydrogenase subunit M [Burkholderia multivorans CF2]
gi|160341645|gb|ABX14731.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia multivorans ATCC 17616]
gi|189335049|dbj|BAG44119.1| NADH dehydrogenase I chain M [Burkholderia multivorans ATCC 17616]
gi|221169108|gb|EEE01576.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD1]
gi|400224956|gb|EJO55151.1| NADH dehydrogenase subunit M [Burkholderia multivorans CF2]
Length = 496
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SL+GL V P +GF + ++ WI+ F I Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSLLGLA--VTIPLITGFDASTAALQFVEQSTWIERFQISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TETHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTETHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|221199668|ref|ZP_03572712.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2M]
gi|221205432|ref|ZP_03578447.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2]
gi|421469608|ref|ZP_15918055.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC
BAA-247]
gi|221174270|gb|EEE06702.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2]
gi|221180953|gb|EEE13356.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2M]
gi|400229459|gb|EJO59307.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC
BAA-247]
Length = 496
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/401 (57%), Positives = 309/401 (77%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SL+GL V P +GF + ++ WI+ F I Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSLLGLA--VTIPLITGFDASTAALQFVEQSTWIERFKISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + + I + +A+Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAAWEVITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TETHSFDLATWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 72/347 (20%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITENVAQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T + +L + N
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYTETHSFDLAT------WQN 200
Query: 674 INCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLL---------- 717
++ LL I L+F K+ + P H W+PD + G S+++ +
Sbjct: 201 AKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 260
Query: 718 ---LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L TP S F L P+VI L++ ++I + A+ Q + K+++
Sbjct: 261 RFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLV 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AYSSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 304 AYSSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDR 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 354 VHSR--QIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|187929281|ref|YP_001899768.1| NADH dehydrogenase subunit M [Ralstonia pickettii 12J]
gi|187726171|gb|ACD27336.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Ralstonia pickettii 12J]
Length = 488
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/369 (60%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AFLILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVIAAWEVITERVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LDG+LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S +F IL WHQ+ ++ EQ+ +F+ FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYFHSG-TFEILQWHQVKLSMNEQVLIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ S II +SL+++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQVKLSMNEQVLIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +LS I+ I + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 131/289 (45%), Gaps = 37/289 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L + LY +GT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVALLYLYFHSGTF 189
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
E+ ++ +KL+ +N VL L + + K+ + P H W+PD + A T
Sbjct: 190 EILQ-WHQVKLS-MNEQVLIF--LAFFMAFAVKVPMWPVHTWLPDAHVEAP--------T 237
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKR 772
+ L I+ +L ++ LP+ + L + +++ ++I + A+ Q + K+
Sbjct: 238 GGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKK 297
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLK 830
++AYSSIAHMG + IFN + G+ +I++ F F I +L
Sbjct: 298 LVAYSSIAHMGFVTL----------GFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLY 347
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 348 DRVHSR--QIADYGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|167585985|ref|ZP_02378373.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ubonensis Bu]
Length = 496
Score = 474 bits (1221), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/401 (56%), Positives = 308/401 (76%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+GL V P + F S ++ WI+ FNI Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGLA--VTVPLITDFDSSTAALQFVEQSTWIERFNITYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + I + +++Y++AFLILSG+++G F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAGWEVITEHVSQYLAAFLILSGIMVGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I QI LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TETHSFDLTTWQNAKIAMTPQILLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 114/270 (42%), Gaps = 56/270 (20%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML + LY T + +L + N ++ LL I L
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLYTETHSFDLTT------WQNAKIAMTPQILLFIAFFL 217
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLL-------------LSTTPKLSLFVIIY 731
+F K+ + P H W+PD + G S+++ + L TP S F
Sbjct: 218 AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHF---- 273
Query: 732 RLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
L P+VI L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 274 ------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL---- 316
Query: 792 IKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQR 849
IFN + + +I++ F F I +L + ++ ++ + G+
Sbjct: 317 ------GFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSR--QIADYGGVVNV 368
Query: 850 NPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A M+F + G P T GF +F +
Sbjct: 369 MPKFAAFAMLFSMANCGLPGTSGFVGEFMV 398
>gi|83719938|ref|YP_441626.1| NADH dehydrogenase subunit M [Burkholderia thailandensis E264]
gi|167580435|ref|ZP_02373309.1| NADH dehydrogenase subunit M [Burkholderia thailandensis TXDOH]
gi|167618544|ref|ZP_02387175.1| NADH dehydrogenase subunit M [Burkholderia thailandensis Bt4]
gi|257139678|ref|ZP_05587940.1| NADH dehydrogenase subunit M [Burkholderia thailandensis E264]
gi|83653763|gb|ABC37826.1| NADH dehydrogenase I, M subunit [Burkholderia thailandensis E264]
Length = 496
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/401 (56%), Positives = 307/401 (76%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SL GL V P +GF S ++ WI+ FNI Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSLAGLA--VTIPLITGFDSSTAALQFVEQTTWIERFNISYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + I + +++Y++AFLILSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAGWEVITENVSQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I Q+ LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQVLLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ ++I LSL ++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+Q
Sbjct: 273 FFAPVVIALSLTAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+AV++NF I + LI AAY+L + K + F
Sbjct: 393 VGEFMVILAAVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 83.6 bits (205), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLFELSNTALSIILFIGAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ + ++ ++TA ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFFAPVVIALSLTAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML + LY T + +L + N ++ LL I L
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQNAKIAMTPQVLLFIAFFL 217
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 218 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPITPD 269
Query: 745 ----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+ +++ L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 270 ASHFFAPVVIALSLTAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL----------GFF 319
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + + +I++ F F I +L + ++ ++ + G+ P A M
Sbjct: 320 IFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSR--QIADYGGVVNVMPKFAAFAM 377
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+F + G P T GF +F +
Sbjct: 378 LFSMANCGLPGTSGFVGEFMV 398
>gi|393758471|ref|ZP_10347292.1| NADH:ubiquinone oxidoreductase subunit M [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
gi|393164890|gb|EJC64942.1| NADH:ubiquinone oxidoreductase subunit M [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
Length = 495
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/385 (57%), Positives = 303/385 (78%), Gaps = 7/385 (1%)
Query: 211 PFFSGF--YSKDKKKI----WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P ++GF + D + + WID F + Y LG+DG+S+WF+ LTAFIT+I++L I
Sbjct: 52 PLYTGFNPATADMQFVELAPWIDAFKVNYHLGVDGISMWFVLLTAFITVIVVLAGWQVIT 111
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
++A+YM AFLILSGL++G F ALDG+LFY+FFEATLIP+++IIG WGG NR YA++KFF
Sbjct: 112 SRVAQYMGAFLILSGLMVGVFAALDGLLFYVFFEATLIPMYLIIGIWGGPNRVYASVKFF 171
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTL+GSLL LI+ IYL+ +S +F+IL+WH++ + Q+ +F F+AFA+K+P+WP+
Sbjct: 172 LYTLLGSLLTLIAFIYLWNVSGGTFDILTWHKVPLDYTTQVMIFAALFMAFAVKVPMWPV 231
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS + +II LSL+++IY
Sbjct: 232 HTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQGLAGIIIALSLVAVIY 291
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++GAI+QMISH +S AMF+ IG
Sbjct: 292 IGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFVFNTTGMEGAIMQMISHGFVSGAMFLCIG 351
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY+++ +R I+++GG++ V+P F FF++FS+AN LPGTSGFIGEF +I+ AV++NF
Sbjct: 352 VLYDRLHSRQIADYGGVVKVMPRFVTFFVLFSMANSGLPGTSGFIGEFTVIMGAVEYNFW 411
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
IG+LT+TALI A+YSL + K + F
Sbjct: 412 IGLLTATALITGASYSLWMLKRVAF 436
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL T + F + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 201 WHKVPLDYTTQVMIFAALFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L+ II+ + + ++GL+ I+Q+D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRFSLPIAPDASQGLAGIIIALSLVAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTL 319
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
G V + +I +++H F +FL G ++ + H++ I + GG+ K MP
Sbjct: 320 GFFVFNTTGMEGAIMQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVKVMP 373
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 137/314 (43%), Gaps = 37/314 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N +++S +K+F+ +L S L L+ ++G
Sbjct: 139 LFYVFFEATLIPMYLIIGIWGGPNRVYAS---VKFFLYTLLGSLLTLIAFIYLWNVSG-- 193
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
F+++ + + ++ + ++F K+ + P H W+PD + A
Sbjct: 194 ---GTFDILTWHKVPLDYTTQVMIFAALFMAFAVKVPMWPVHTWLPDAHVEAP------- 243
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + + I++ L++ ++I + AI Q +
Sbjct: 244 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQGLAGIIIALSLVAVIYIGLVAIVQDDM 302
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
K+++AYSS+AHMG + T+ + + +I++ F F I +L
Sbjct: 303 KKLVAYSSVAHMGFVTLGFFVFNTT--------GMEGAIMQMISHGFVSGAMFLCIGVLY 354
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
+ ++ ++ + G+ + P ++F + +G P T GF +F + E W
Sbjct: 355 DRLHSR--QIADYGGVVKVMPRFVTFFVLFSMANSGLPGTSGFIGEFTVIMGAVE-YNFW 411
Query: 891 LLLLIIMCSLIGAK 904
+ LL + GA
Sbjct: 412 IGLLTATALITGAS 425
>gi|372489649|ref|YP_005029214.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Dechlorosoma suillum PS]
gi|359356202|gb|AEV27373.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Dechlorosoma suillum PS]
Length = 493
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/385 (57%), Positives = 300/385 (77%), Gaps = 7/385 (1%)
Query: 211 PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P ++GF ++ WI FNI Y LG+DG+S+ F+ L AFIT++++L I+
Sbjct: 49 PLYTGFDKATSAMQFVEQASWIAPFNINYHLGVDGISMPFVILNAFITILVVLAGWKVIE 108
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
+++A+Y +AFLI+SGL+ G FCALDG+LFY+FFEA+LIP+++IIG WGG NR YAAIKFF
Sbjct: 109 QRVAQYNAAFLIMSGLLNGIFCALDGVLFYVFFEASLIPLYLIIGMWGGPNRVYAAIKFF 168
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTLMGSLL LI++IYL++ S SF+I WHQL + QIWLF+ F +AFA+K+P+WP+
Sbjct: 169 LYTLMGSLLFLIALIYLFFQSGGSFSIQDWHQLPLDLTTQIWLFLAFLVAFAVKVPMWPV 228
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAI LKLG YG LRFSLPI PDAS+ S L+I LSLI++IY
Sbjct: 229 HTWLPDAHVEAPTGGSVVLAAIALKLGAYGFLRFSLPIAPDASHELSGLMIGLSLIAVIY 288
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I +A+VQ D+KKL+AYSSIAHMGFVTLG FML + ++GA++QMISH +S AMF+ IG
Sbjct: 289 IGFVALVQADMKKLVAYSSIAHMGFVTLGFFMLNPLGVEGALVQMISHGFVSGAMFLCIG 348
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY++M +R I+++GG++N +P F+ FF++FS+AN LP TSGF+GEFM+IL AV++NF
Sbjct: 349 VLYDRMHSRQIADYGGVVNTMPKFAAFFMLFSMANAGLPATSGFVGEFMVILGAVEYNFW 408
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
+ +T +I AAY+L + K ++F
Sbjct: 409 VAFAAATTMIVGAAYTLWMYKRVVF 433
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL +T + FL + K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 198 WHQLPLDLTTQIWLFLAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIALKLGA 256
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS +++ + I ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPIAPDASHELSGLMIGLSLIAVIYIGFVALVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV ++ +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFMLNPLGVEG---ALVQMISHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVVNTMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFFMLFSMANAGLPATSGFVGE 395
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 136/286 (47%), Gaps = 30/286 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILY---GIT 657
L ++ L+ L L + + N ++ AAIK+F+ ++ S +L+ I+++Y
Sbjct: 136 LFYVFFEASLIPLYLIIGMWGGPNRVY---AAIKFFLYTLMGS--LLFLIALIYLFFQSG 190
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
G+ +Q ++ + L+ L L+ L V + K+ + P H W+PD + A +++
Sbjct: 191 GSFSIQD-WHQLPLDLTTQIWLFLAFL---VAFAVKVPMWPVHTWLPDAHVEAPTGGSVV 246
Query: 718 LSTTPKLSLFVIIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRM 773
L+ ++L + Y L + LP+ + +++ L++ ++I A+ Q + K++
Sbjct: 247 LAA---IALKLGAYGFL-RFSLPIAPDASHELSGLMIGLSLIAVIYIGFVALVQADMKKL 302
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
+AYSSIAHMG + + N L + L +I++ F F I +L +
Sbjct: 303 VAYSSIAHMGFVTLGFFML----NPL----GVEGALVQMISHGFVSGAMFLCIGVLYDRM 354
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A M+F + AG P T GF +F +
Sbjct: 355 HSR--QIADYGGVVNTMPKFAAFFMLFSMANAGLPATSGFVGEFMV 398
>gi|241663472|ref|YP_002981832.1| NADH dehydrogenase subunit M [Ralstonia pickettii 12D]
gi|240865499|gb|ACS63160.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Ralstonia pickettii 12D]
Length = 488
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/369 (60%), Positives = 305/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I +++A+YM+AF+ILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVIAAWEVITERVAQYMAAFMILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LDG+LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S +F IL WHQ+ ++ EQI +F+ FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYFHSG-TFEILQWHQVKLSMNEQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ S II +SL+++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQVKLSMNEQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +LS I+ I + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 48.9 bits (115), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 131/289 (45%), Gaps = 37/289 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L + LY +GT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVALLYLYFHSGTF 189
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
E+ ++ +KL+ +N +L L + + K+ + P H W+PD + A T
Sbjct: 190 EILQ-WHQVKLS-MNEQILIF--LAFFMAFAVKVPMWPVHTWLPDAHVEAP--------T 237
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKR 772
+ L I+ +L ++ LP+ + L + +++ ++I + A+ Q + K+
Sbjct: 238 GGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKK 297
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLK 830
++AYSSIAHMG + IFN + G+ +I++ F F I +L
Sbjct: 298 LVAYSSIAHMGFVTL----------GFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLY 347
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 348 DRVHSR--QIADYGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|167836062|ref|ZP_02462945.1| NADH dehydrogenase subunit M [Burkholderia thailandensis MSMB43]
gi|424902733|ref|ZP_18326249.1| NADH dehydrogenase subunit M [Burkholderia thailandensis MSMB43]
gi|390933108|gb|EIP90508.1| NADH dehydrogenase subunit M [Burkholderia thailandensis MSMB43]
Length = 496
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/398 (56%), Positives = 307/398 (77%), Gaps = 10/398 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
+LIG L+ V P +GF S ++ WI+ FNI Y LG+DG+S+WF+ LTA I
Sbjct: 37 ALIGSLASLAVTIPLITGFDSSTAALQFVEQSTWIERFNITYHLGVDGISMWFVVLTALI 96
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I+++ + I + +++Y++AFLILSG+++G F A DG+LFY+FFEATLIP++IIIG W
Sbjct: 97 TVIVVIAGWEVITEHVSQYLAAFLILSGIMVGVFSAADGLLFYVFFEATLIPMYIIIGVW 156
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG NR YAA KFFLYTL GSLLML+++IYLY SF++ +W I Q+ LFI F
Sbjct: 157 GGPNRVYAAFKFFLYTLAGSLLMLVALIYLY-TQTHSFDLATWQNAKIAMTPQVLLFIAF 215
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
F+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++F+
Sbjct: 216 FLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFFA 275
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
+I LSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+QMIS
Sbjct: 276 PAVIALSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMIS 335
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY+++ +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF+GE
Sbjct: 336 HGFVSGAMFLCIGVLYDRLHSRQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGE 395
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
FM+IL++V++NF I + LI AAY+L + K + F
Sbjct: 396 FMVILASVQYNFWIAFGAAFTLILGAAYTLWMYKRVYF 433
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W + +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQNAKIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ ++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFFAPAVIALSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AAFAMLFSMANCGLPGTSGFVGE 395
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML + LY T + +L + N ++ LL I L
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLYTQTHSFDLAT------WQNAKIAMTPQVLLFIAFFL 217
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 218 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPITPD 269
Query: 745 ----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+ ++ L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 270 ASHFFAPAVIALSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL----------GFF 319
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + + +I++ F F I +L + ++ ++ + G+ P A M
Sbjct: 320 IFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSR--QIADYGGVVNVMPKFAAFAM 377
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+F + G P T GF +F +
Sbjct: 378 LFSMANCGLPGTSGFVGEFMV 398
>gi|309781864|ref|ZP_07676597.1| NADH dehydrogenase (ubiquinone), M subunit [Ralstonia sp.
5_7_47FAA]
gi|404396475|ref|ZP_10988269.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Ralstonia sp. 5_2_56FAA]
gi|308919505|gb|EFP65169.1| NADH dehydrogenase (ubiquinone), M subunit [Ralstonia sp.
5_7_47FAA]
gi|348613565|gb|EGY63144.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Ralstonia sp. 5_2_56FAA]
Length = 488
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/369 (61%), Positives = 304/369 (82%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ F+I Y+LG+DG+S+WF+ LTAFIT+I+++ + + I ++A+YM+AFLILSGL
Sbjct: 62 EKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITVRVAQYMAAFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LDG+LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S +F IL WHQ+ ++ EQI +F+ FF+AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 182 LYFHSG-TFEILQWHQVKLSMNEQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS+ S II +SL+++IYI L+A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +I ++G I+QMISH IS AMF+ IG LY+++ +R I+++GG
Sbjct: 301 YSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ + F++ANC LP TSGF+GEFM+IL +VKFNF IG+L +TALIF AAYS
Sbjct: 361 VVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAYS 420
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 421 LWMVKRVIF 429
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQVKLSMNEQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +LS I+ I + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GV I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFNEIGVEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
S+ ++ G P SGF +
Sbjct: 369 AALSVFFAMANCGLPATSGFVGE 391
Score = 48.5 bits (114), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 131/289 (45%), Gaps = 37/289 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L + LY +GT
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVALLYLYFHSGTF 189
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
E+ ++ +KL+ +N +L L + + K+ + P H W+PD + A T
Sbjct: 190 EILQ-WHQVKLS-MNEQILIF--LAFFMAFAVKVPMWPVHTWLPDAHVEAP--------T 237
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKR 772
+ L I+ +L ++ LP+ + L + +++ ++I + A+ Q + K+
Sbjct: 238 GGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKK 297
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLK 830
++AYSSIAHMG + IFN + G+ +I++ F F I +L
Sbjct: 298 LVAYSSIAHMGFVTL----------GFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLY 347
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A + + F + G P T GF +F +
Sbjct: 348 DRVHSR--QIADYGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMV 394
>gi|295676049|ref|YP_003604573.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. CCGE1002]
gi|295435892|gb|ADG15062.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. CCGE1002]
Length = 496
Score = 471 bits (1212), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/398 (57%), Positives = 305/398 (76%), Gaps = 10/398 (2%)
Query: 200 SLIG--LLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SLIG L LV P + F S ++ WI F+I Y LG+DG+S+WF+ LTA I
Sbjct: 37 SLIGSVLSFLVTLPLITSFDSSTADLQFVEQANWIQRFHIMYHLGVDGISMWFVSLTALI 96
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I+++ + I K + +Y++AFLILSG+++G F A DGMLFY+FFEATLIP++IIIG W
Sbjct: 97 TVIVVIAGWEVITKNVGQYLAAFLILSGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVW 156
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG+NR YAA KFFLYTL GSLLML+++IYLY SF+I +W I Q+ LFI F
Sbjct: 157 GGANRVYAAFKFFLYTLAGSLLMLVALIYLYN-ETGSFDIATWQHAQIAMTPQVLLFIAF 215
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
F+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++ +
Sbjct: 216 FLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLA 275
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
+IITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ +GAI+QMIS
Sbjct: 276 PVIITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGAEGAIVQMIS 335
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++NV+P F+ F ++F++ANC LPGTSGF+GE
Sbjct: 336 HGFVSGAMFLCIGVLYDRMHSRQIADYGGVVNVMPKFAAFVMLFAMANCGLPGTSGFVGE 395
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
FM+IL++V++NF I + LI AAY+L + K + F
Sbjct: 396 FMVILASVQYNFWIASGAAVTLILGAAYTLWMYKRVYF 433
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVT 81
I W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+
Sbjct: 195 IATWQHAQIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLK 253
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S+ +I+ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 254 LGAYGFLRFSLPITPDASHFLAPVIITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGF 313
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LG +I +++H F +FL G ++ + H++ I + GG+ M
Sbjct: 314 VTLGFFIFNQLGAEG---AIVQMISHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVVNVM 369
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P ++ ++ G P SGF +
Sbjct: 370 PKFAAFVMLFAMANCGLPGTSGFVGE 395
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 56/270 (20%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML + LY TG+ F++ + ++ LL I L
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLYNETGS------FDIATWQHAQIAMTPQVLLFIAFFL 217
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLL-------------LSTTPKLSLFVIIY 731
+F K+ + P H W+PD + G S+++ + L TP S F
Sbjct: 218 AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHF---- 273
Query: 732 RLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
L P++I L++ ++I + A+ Q + K+++AYSSIAHMG +
Sbjct: 274 ------LAPVIIT-------LSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL---- 316
Query: 792 IKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQR 849
IFN + + +I++ F F I +L + ++ ++ + G+
Sbjct: 317 ------GFFIFNQLGAEGAIVQMISHGFVSGAMFLCIGVLYDRMHSR--QIADYGGVVNV 368
Query: 850 NPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A +M+F + G P T GF +F +
Sbjct: 369 MPKFAAFVMLFAMANCGLPGTSGFVGEFMV 398
>gi|209518503|ref|ZP_03267324.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. H160]
gi|209501048|gb|EEA01083.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. H160]
Length = 496
Score = 471 bits (1212), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/398 (56%), Positives = 307/398 (77%), Gaps = 10/398 (2%)
Query: 200 SLIG--LLSLVGAPFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SLIG L LV P + F S +++ WID F+I Y LG+DG+S+WF+ LTA I
Sbjct: 37 SLIGSVLSFLVTLPLITSFDSSTADLQFEEQASWIDRFHITYHLGVDGISMWFVVLTALI 96
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I+++ + + I K + +Y++AFLILSG+++G F A DG+LFY+FFEATLIP++IIIG W
Sbjct: 97 TVIVVIAAWEVITKNVGQYLAAFLILSGVMVGVFSAADGLLFYVFFEATLIPMYIIIGVW 156
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG+NR YAA KFFLYTL GSLLML+++IYLY +F++ +W I Q+ LFI F
Sbjct: 157 GGANRVYAAFKFFLYTLAGSLLMLVALIYLYN-ETGTFDLATWQHAQIAMTPQVLLFIAF 215
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
F+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++ +
Sbjct: 216 FLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLA 275
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
++ITLSLI++IYI +AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ +GAI+QMIS
Sbjct: 276 PVVITLSLIAVIYIGFVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGAEGAIVQMIS 335
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG++NV+P F+ F ++F++ANC LPGTSGF+GE
Sbjct: 336 HGFVSGAMFLCIGVLYDRMHSRQIADYGGVVNVMPKFAAFVMLFAMANCGLPGTSGFVGE 395
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
FM+IL++V++NF I + LI AAY+L + K + F
Sbjct: 396 FMVILASVQYNFWIASGAAVTLILGAAYTLWMYKRVYF 433
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQHAQIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGFVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGAEG---AIVQMISHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFVMLFAMANCGLPGTSGFVGE 395
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 94/418 (22%), Positives = 173/418 (41%), Gaps = 79/418 (18%)
Query: 500 ISIGFLYNQMKTRLISNFGGIIN---VIPHFSVFFIIFSLANCSLPGTSGFIGEFMII-- 554
++IG N R IS G +++ +P + F S A+ + +I F I
Sbjct: 22 LAIGNDENPAPARWISLIGSVLSFLVTLPLITSF--DSSTADLQFEEQASWIDRFHITYH 79
Query: 555 --LSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLL 602
+ + F + T ++ AA+ + ++KN+ L +++SG L
Sbjct: 80 LGVDGISMWFVVLTALITVIVVIAAWEV-ITKNVGQYLAAFLILSGVMVGVFSAADGLLF 138
Query: 603 SIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLEL 662
++ L+ + + + + N ++ AA K+F+ + S ML + LY TGT +L
Sbjct: 139 YVFFEATLIPMYIIIGVWGGANRVY---AAFKFFLYTLAGSLLMLVALIYLYNETGTFDL 195
Query: 663 QSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITL 716
+ + ++ LL I L+F K+ + P H W+PD + G S+++
Sbjct: 196 AT------WQHAQIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA 249
Query: 717 L-------------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVS 763
+ L TP S F L P+VI L++ ++I
Sbjct: 250 IMLKLGAYGFLRFSLPITPDASHF----------LAPVVIT-------LSLIAVIYIGFV 292
Query: 764 AITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILG 821
A+ Q + K+++AYSSIAHMG + IFN + + +I++ F
Sbjct: 293 AMVQADMKKLVAYSSIAHMGFVTL----------GFFIFNQLGAEGAIVQMISHGFVSGA 342
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
F I +L + ++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 343 MFLCIGVLYDRMHSR--QIADYGGVVNVMPKFAAFVMLFAMANCGLPGTSGFVGEFMV 398
>gi|383757424|ref|YP_005436409.1| NADH-quinone oxidoreductase, M subunit NuoM [Rubrivivax gelatinosus
IL144]
gi|381378093|dbj|BAL94910.1| NADH-quinone oxidoreductase, M subunit NuoM [Rubrivivax gelatinosus
IL144]
Length = 491
Score = 471 bits (1212), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/389 (56%), Positives = 302/389 (77%), Gaps = 7/389 (1%)
Query: 207 LVGAPFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P +GF + +K WI+ N++Y LG+DGLS+WF+ LTAFIT+I+++ +
Sbjct: 43 LVTIPLITGFDAGTAALQFQEKVSWIERLNVFYHLGVDGLSVWFVLLTAFITVIVVIAAW 102
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
I ++ Y+ AFLILSGL+ G F A+DG+LFY+FFEATLIP++IIIG WGG R YAA
Sbjct: 103 QVITDRVPLYLGAFLILSGLMCGVFSAVDGLLFYVFFEATLIPMYIIIGVWGGPRRVYAA 162
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTL+GSLLML++++YLYY S SF IL WH+L ++ Q LF+ FF AF++K+P
Sbjct: 163 FKFFLYTLLGSLLMLVAVVYLYYQSGGSFEILDWHKLPLSLPAQTLLFVAFFAAFSVKVP 222
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDA+ ++ +I+TLSLI
Sbjct: 223 MWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDAAREYAWVIVTLSLI 282
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+++YI L+A+VQ D+KKL+AYSSIAHMGFVTLG F+ ++ + GAI+QMISH +S AMF
Sbjct: 283 AVVYIGLVALVQRDMKKLVAYSSIAHMGFVTLGFFIFNQLGVTGAIVQMISHGFVSGAMF 342
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ IG LY+++ +R IS +GG++N +P F+ F ++F++ANC LPGT+GF+GE+M+IL +VK
Sbjct: 343 LCIGVLYDRVHSREISAYGGVVNTMPKFAAFAVLFAMANCGLPGTAGFVGEWMVILGSVK 402
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F + L +T LIF AAY+L + K + F
Sbjct: 403 YDFWVAGLAATTLIFGAAYTLWMVKRVYF 431
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL++ A F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 196 WHKLPLSLPAQTLLFVAFFAAFSVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + + +I+ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSLPIAPDAAREYAWVIVTLSLIAVVYIGLVALVQRDMKKLVAYSSIAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV+ +I +++H F +FL G ++ + H+++I GG+ MP
Sbjct: 315 GFFIFNQLGVTG---AIVQMISHGFVSGAMFLCIG-VLYDRVHSREISAYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P +GF +
Sbjct: 371 AAFAVLFAMANCGLPGTAGFVGE 393
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 116/257 (45%), Gaps = 29/257 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ +L S ML + LY +G F ++ + + S+ A +LL +
Sbjct: 161 AAFKFFLYTLLGSLLMLVAVVYLYYQSG-----GSFEILDWHKLPLSLPAQTLLFVAFFA 215
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
S K+ + P H W+PD + G S+++ ++ KL + + R +
Sbjct: 216 AFSVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIML---KLGAYGFL-RFSLPIAPDAARE 271
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ +++ L++ +++ + A+ Q + K+++AYSSIAHMG + IFN
Sbjct: 272 YAWVIVTLSLIAVVYIGLVALVQRDMKKLVAYSSIAHMGFVTL----------GFFIFNQ 321
Query: 805 --CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F I +L + ++ E+ + G+ P A ++F
Sbjct: 322 LGVTGAIVQMISHGFVSGAMFLCIGVLYDRVHSR--EISAYGGVVNTMPKFAAFAVLFAM 379
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF ++ +
Sbjct: 380 ANCGLPGTAGFVGEWMV 396
>gi|91782624|ref|YP_557830.1| NADH dehydrogenase subunit M [Burkholderia xenovorans LB400]
gi|385203211|ref|ZP_10030081.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. Ch1-1]
gi|91686578|gb|ABE29778.1| NADH dehydrogenase subunit M [Burkholderia xenovorans LB400]
gi|385183102|gb|EIF32376.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. Ch1-1]
Length = 496
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/389 (58%), Positives = 308/389 (79%), Gaps = 8/389 (2%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P +GF S +K WI+ FNI Y LG+DG+S+WF+ LTA IT+I+++ +
Sbjct: 46 LVTIPLITGFDSSTADLQFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I K +A+Y++AFLILSG+++G F A DGMLFY+FFEATLIP++IIIG WGG+NR YAA
Sbjct: 106 EVITKNVAQYLAAFLILSGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAA 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTLMGSLLML++++YLY + +F++ +W I Q+ LFI FF+AFA+K+P
Sbjct: 166 FKFFLYTLMGSLLMLVALLYLY-VQTGTFDLATWQHAQIAMTPQVLLFIAFFMAFAVKVP 224
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++ + ++ITLSLI
Sbjct: 225 MWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLI 284
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+QMISH +S AMF
Sbjct: 285 AVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMF 344
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+SIG LY++M +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF+GEFM+IL+AV+
Sbjct: 345 LSIGVLYDRMHSRQIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQ 404
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+NF I + LI AAY+L + K + F
Sbjct: 405 YNFWIAGGAAVTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQHAQIAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLSIG-VLYDRMHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFVMLFSMANCGLPGTSGFVGE 395
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 68/345 (19%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + ++KN+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITKNVAQYLAAFLILSGIMVGVFSAADGMLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ ++ S ML + LY TGT +L + +
Sbjct: 150 YIIIGVWGGANRVY---AAFKFFLYTLMGSLLMLVALLYLYVQTGTFDLATW----QHAQ 202
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLL------------ 717
I + L + + + K+ + P H W+PD + G S+++ +
Sbjct: 203 IAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 262
Query: 718 -LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
L TP S F L P+VI L++ ++I + A+ Q + K+++AY
Sbjct: 263 SLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLVAY 305
Query: 777 SSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTC 834
SSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 306 SSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMH 355
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 356 SR--QIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMV 398
>gi|365093695|ref|ZP_09330756.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax sp. NO-1]
gi|363414179|gb|EHL21333.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax sp. NO-1]
Length = 491
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/399 (56%), Positives = 310/399 (77%), Gaps = 9/399 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ + ++IG L V P + GF +K WI+ FN++Y LG+DG+S WF+PLT
Sbjct: 33 LALVGAMIGFL--VTLPLYDGFQLGTAAMQFVEKAAWIERFNVHYHLGVDGISFWFVPLT 90
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AFIT+I+++ S + I +++ +YM AFLILSGL+IG F ALDGMLFY+FFEATLIP+++II
Sbjct: 91 AFITVIVVMASWESITERVNQYMGAFLILSGLMIGVFTALDGMLFYVFFEATLIPMYLII 150
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG N+ YAA KFFLYTL+GSLLMLI++I+LY S SF+I +WHQL +++ Q LF
Sbjct: 151 GIWGGPNKIYAAFKFFLYTLLGSLLMLIALIFLYNQSGGSFDIATWHQLPLSRTAQTLLF 210
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
FF AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDAS
Sbjct: 211 FAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASR 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
++ L+I LSLI++IY+ L+AMVQ D+KKL+AYSS+AHMGFVTLG F+ + + G ++Q
Sbjct: 271 EWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MI+H +S AMF+SIG LY+++ +R I+ +GG++N +P+F+ F ++F++ANC LPGT+GF
Sbjct: 331 MIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
+GE+M+IL AVK NF IG+ +TALIF AAY+L + K +
Sbjct: 391 VGEWMVILGAVKANFWIGLAAATALIFGAAYTLWMFKRV 429
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHQLPLSRTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSMPIAPDASREWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS + ++ H F +FLS G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GLVQMIAHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PNFTAFALLFAMANCGLPGTAGFVGE 393
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIFLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHQLPLSRTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDASREWAWLMIALSLIAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|171058197|ref|YP_001790546.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Leptothrix cholodnii SP-6]
gi|170775642|gb|ACB33781.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Leptothrix cholodnii SP-6]
Length = 490
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/365 (61%), Positives = 299/365 (81%), Gaps = 1/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ FN+ Y LG+DG+S+WF+ LTAFIT+I+++ + + I+K++ +YM AFLILSGL++G
Sbjct: 67 WIERFNVRYHLGVDGISVWFVLLTAFITVIVVISAWEVIEKRVHQYMGAFLILSGLMVGV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A+DGMLFY+FFEATLIP+++IIG WGG+ R YAA KFFLYTL GSLLMLI++I+LYY
Sbjct: 127 FSAVDGMLFYVFFEATLIPMYLIIGMWGGARRVYAAFKFFLYTLAGSLLMLIALIFLYYK 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF IL+WH L + + Q+ LF FF AFA+K+P+WP+HTWLPDAHVEAPT GSV+LA
Sbjct: 187 SGGSFEILTWHALPLGETPQMLLFFAFFAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG LRFSLPI PDA+ ++ IIT+SL+++IYI L+A+VQ D+KKL+AYSSI
Sbjct: 247 AIMLKLGAYGFLRFSLPIVPDAAMTYAPFIITISLVAVIYIGLVALVQKDMKKLVAYSSI 306
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ +++ I G ++QMISH +S AMF+SIG LY+++ +R I+ +GG++N
Sbjct: 307 AHMGFVTLGFFIFSELGISGGLVQMISHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNT 366
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F + F +ANC LPGT+GFIGE+M+IL AVK+NF IG+L +TALIF AAY+L +
Sbjct: 367 MPKFTAFAVFFGMANCGLPGTAGFIGEWMVILGAVKYNFWIGLLAATALIFGAAYTLWMI 426
Query: 584 KNIIF 588
K + F
Sbjct: 427 KRVYF 431
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 16/201 (7%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL T + F K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 196 WHALPLGETPQMLLFFAFFAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + + T I+ I + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSLPIVPDAAMTYAPFIITISLVAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP-I 195
G LG+S + +++H F +FLS G ++ + H+++I GG+ MP
Sbjct: 315 GFFIFSELGISG---GLVQMISHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTMPKF 370
Query: 196 TCITSLIGLLSLVGAPFFSGF 216
T G+ + G P +GF
Sbjct: 371 TAFAVFFGMAN-CGLPGTAGF 390
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 22/193 (11%)
Query: 693 KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + P H W+PD + G S+++ ++ KL + + R + + + +
Sbjct: 220 KVPMWPVHTWLPDAHVEAPTGGSVVLAAIML---KLGAYGFL-RFSLPIVPDAAMTYAPF 275
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC--D 806
++ +++ ++I + A+ Q + K+++AYSSIAHMG + IF+
Sbjct: 276 IITISLVAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTL----------GFFIFSELGIS 325
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
GL +I++ F F I +L + ++ E+ + G+ P + F + G
Sbjct: 326 GGLVQMISHGFVSGAMFLSIGVLYDRVHSR--EIAAYGGVVNTMPKFTAFAVFFGMANCG 383
Query: 867 FPPTIGFYAKFFI 879
P T GF ++ +
Sbjct: 384 LPGTAGFIGEWMV 396
>gi|407712819|ref|YP_006833384.1| NADH-quinone oxidoreductase subunit M [Burkholderia phenoliruptrix
BR3459a]
gi|407235003|gb|AFT85202.1| NADH-quinone oxidoreductase subunit M [Burkholderia phenoliruptrix
BR3459a]
Length = 496
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/389 (58%), Positives = 307/389 (78%), Gaps = 8/389 (2%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P +GF S +K WI+ FNI Y LG+DG+S+WF+ LTA IT+I+++ +
Sbjct: 46 LVTIPLITGFDSSTADLQFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I K + +Y+++FLILSG+++G F A DGMLFY+FFEATLIP++IIIG WGG+NR YAA
Sbjct: 106 EVITKNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAA 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTLMGSLLML++++YLY I +F++ +W I QI LFI FF+AFA+K+P
Sbjct: 166 FKFFLYTLMGSLLMLVALLYLY-IQTGTFDLATWQHAQIAMTPQILLFIAFFMAFAVKVP 224
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++ + ++ITLSLI
Sbjct: 225 MWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLI 284
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+QMISH +S AMF
Sbjct: 285 AVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMF 344
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+SIG LY++M +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF+GEFM+IL+AV+
Sbjct: 345 LSIGVLYDRMHSRQIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQ 404
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+NF I + LI AAY+L + K + F
Sbjct: 405 YNFWIAAGAAVTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQHAQIAMTPQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLSIG-VLYDRMHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFVMLFSMANCGLPGTSGFVGE 395
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 68/345 (19%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + ++KN+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITKNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ ++ S ML + LY TGT +L + +
Sbjct: 150 YIIIGVWGGANRVY---AAFKFFLYTLMGSLLMLVALLYLYIQTGTFDLATW----QHAQ 202
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLL------------ 717
I + L + + + K+ + P H W+PD + G S+++ +
Sbjct: 203 IAMTPQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 262
Query: 718 -LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
L TP S F L P+VI L++ ++I + A+ Q + K+++AY
Sbjct: 263 SLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLVAY 305
Query: 777 SSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTC 834
SSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 306 SSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMH 355
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 356 SR--QIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMV 398
>gi|323525448|ref|YP_004227601.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. CCGE1001]
gi|323382450|gb|ADX54541.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. CCGE1001]
Length = 496
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/389 (58%), Positives = 307/389 (78%), Gaps = 8/389 (2%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P +GF S +K WI+ FNI Y LG+DG+S+WF+ LTA IT+I+++ +
Sbjct: 46 LVTIPLITGFDSSTADLQFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAW 105
Query: 261 DI-KKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+I K + +Y+++FLILSG+++G F A DGMLFY+FFEATLIP++IIIG WGG+NR YAA
Sbjct: 106 EIITKNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAA 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTLMGSLLML++++YLY I +F++ +W I QI LFI FF+AFA+K+P
Sbjct: 166 FKFFLYTLMGSLLMLVALLYLY-IQTGTFDLATWQHAQIAMTPQILLFIAFFMAFAVKVP 224
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++ + ++ITLSLI
Sbjct: 225 MWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLI 284
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+QMISH +S AMF
Sbjct: 285 AVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMF 344
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+SIG LY++M +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF+GEFM+IL+AV+
Sbjct: 345 LSIGVLYDRMHSRQIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQ 404
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+NF I + LI AAY+L + K + F
Sbjct: 405 YNFWIAAGAAVTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQHAQIAMTPQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLSIG-VLYDRMHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFVMLFSMANCGLPGTSGFVGE 395
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 68/345 (19%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + ++KN+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEI-ITKNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ ++ S ML + LY TGT +L + +
Sbjct: 150 YIIIGVWGGANRVY---AAFKFFLYTLMGSLLMLVALLYLYIQTGTFDLATW----QHAQ 202
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLL------------ 717
I + L + + + K+ + P H W+PD + G S+++ +
Sbjct: 203 IAMTPQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 262
Query: 718 -LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
L TP S F L P+VI L++ ++I + A+ Q + K+++AY
Sbjct: 263 SLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLVAY 305
Query: 777 SSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTC 834
SSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 306 SSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMH 355
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 356 SR--QIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMV 398
>gi|351731280|ref|ZP_08948971.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax radicis N35]
Length = 491
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/397 (56%), Positives = 308/397 (77%), Gaps = 15/397 (3%)
Query: 205 LSLVGA--------PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
L+LVGA P + GF +K WI+ FN++Y LG+DG+S WF+PLTAF
Sbjct: 33 LALVGAVIGFLVTLPLYDGFQLGTAAMQFVEKAAWIERFNVHYHLGVDGISFWFVPLTAF 92
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
IT+I+++ S + I +++ +YM AFLILSGL++G F ALDGMLFY+FFEATLIP+++IIG
Sbjct: 93 ITVIVVVASWESITERVNQYMGAFLILSGLMVGVFTALDGMLFYVFFEATLIPMYLIIGI 152
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG N+ YAA KFFLYTL+GSLLMLI++I+LY S SF+I +WHQL +++ Q LF
Sbjct: 153 WGGPNKIYAAFKFFLYTLLGSLLMLIALIFLYNQSGGSFDIATWHQLPLSRTAQTLLFFA 212
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
FF AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDAS +
Sbjct: 213 FFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASREW 272
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
+ L+I LSLI++IY+ L+AMVQ D+KKL+AYSS+AHMGFVTLG F+ + + G ++QMI
Sbjct: 273 AWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLVQMI 332
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
+H +S AMF+SIG LY+++ +R I+ +GG++N +P+F+ F ++F++ANC LPGT+GF+G
Sbjct: 333 AHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGFVG 392
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
E+M+IL AVK NF IG+ +TALIF AAY+L + K +
Sbjct: 393 EWMVILGAVKANFWIGLAAATALIFGAAYTLWMFKRV 429
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHQLPLSRTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSMPIAPDASREWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS + ++ H F +FLS G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GLVQMIAHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PNFTAFALLFAMANCGLPGTAGFVGE 393
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIFLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHQLPLSRTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDASREWAWLMIALSLIAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|407938243|ref|YP_006853884.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax sp. KKS102]
gi|407896037|gb|AFU45246.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax sp. KKS102]
Length = 491
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/423 (54%), Positives = 319/423 (75%), Gaps = 15/423 (3%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD------KKKI 224
G++++ + ++ R + L + +LIG L V P + GF +K
Sbjct: 15 GALLLAIGRDEHARAVRWL------ALVGALIGFL--VTLPLYDGFKLGTAAMQFVEKAD 66
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ FNI+Y LG+DG+S WF+PLTAFIT+I+++ S + I +++ +YM AFLILSGL+IG
Sbjct: 67 WIERFNIHYHLGVDGISFWFVPLTAFITVIVVIASWESITERVNQYMGAFLILSGLMIGV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALDG+LFY+FFEATLIP+++IIG WGG N+ YAA KFFLYTL+GSLLMLI++IYLY
Sbjct: 127 FSALDGILFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLIALIYLYNQ 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF+I +WHQL ++ Q LF FF AFA+K+P+WP+HTWLPD HVEAPT GS +LA
Sbjct: 187 SGGSFDIATWHQLPLSGRAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG LRFSLPI PDA+ ++ L+I LSLI++IY+ L+AMVQ D+KKL+AYSS+
Sbjct: 247 AIMLKLGAYGFLRFSLPIAPDAARQWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSV 306
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ + + G I+QMI+H +S AMF+SIG LY+++ +R I+ +GG++N
Sbjct: 307 AHMGFVTLGFFIFNDLGVSGGIVQMIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNT 366
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P+F+ F ++F++ANC LPGT+GF+GE+M+IL AVK NF IG+ +TALIF AAY+L +
Sbjct: 367 MPNFTAFALLFAMANCGLPGTAGFVGEWMVILGAVKANFWIGLAAATALIFGAAYTLWMF 426
Query: 584 KNI 586
K +
Sbjct: 427 KRV 429
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ A F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHQLPLSGRAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + + +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSLPIAPDAARQWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS I ++ H F +FLS G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GIVQMIAHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PNFTAFALLFAMANCGLPGTAGFVGE 393
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIYLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHQLPLSGRAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSLPIAPDAARQWAWLMIALSLIAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN G+ +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGIVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|187923352|ref|YP_001894994.1| NADH dehydrogenase subunit M [Burkholderia phytofirmans PsJN]
gi|187714546|gb|ACD15770.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia phytofirmans PsJN]
Length = 496
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/389 (58%), Positives = 308/389 (79%), Gaps = 8/389 (2%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P +GF S +K WI+ FNI Y LG+DG+S+WF+ LTA IT+I+++ +
Sbjct: 46 LVTIPLITGFDSSTADLQFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I KK+ +Y++AFLILSG+++G F + DGMLFY+FFEATLIP++IIIG WGG+NR YAA
Sbjct: 106 EVITKKVGQYLAAFLILSGIMVGVFSSADGMLFYVFFEATLIPMYIIIGVWGGANRVYAA 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTLMGSLLML++++YLY I +F++ +W I Q+ +FI FF+AFA+K+P
Sbjct: 166 FKFFLYTLMGSLLMLVALLYLY-IQTGTFDLATWQHAQIAMTPQVLIFIAFFMAFAVKVP 224
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG +RFSLPI PDAS++ + +I+TLSLI
Sbjct: 225 MWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFVRFSLPIAPDASHFLAPVIVTLSLI 284
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+QMISH +S AMF
Sbjct: 285 AVIYIGLVAMVQTDMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMF 344
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+SIG LY++M +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF+GEFM+IL+AV+
Sbjct: 345 LSIGVLYDRMHSRQIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQ 404
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+NF I + LI AAY+L + K + F
Sbjct: 405 YNFWIAGGAAVTLILGAAYTLWMYKRVYF 433
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQHAQIAMTPQVLIFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +I+ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFVRFSLPIAPDASHFLAPVIVTLSLIAVIYIGLVAMVQTDMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLSIG-VLYDRMHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFVMLFSMANCGLPGTSGFVGE 395
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 128/289 (44%), Gaps = 37/289 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ ++ S ML + LY TGT
Sbjct: 137 LFYVFFEATLIPMYIIIGVWGGANRVY---AAFKFFLYTLMGSLLMLVALLYLYIQTGTF 193
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
+L + + I + L + + + K+ + P H W+PD + A T
Sbjct: 194 DLATW----QHAQIAMTPQVLIFIAFFMAFAVKVPMWPVHTWLPDAHVEAP--------T 241
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKR 772
+ L I+ +L ++ LP+ + +++ L++ ++I + A+ Q + K+
Sbjct: 242 GGSVVLAAIMLKLGAYGFVRFSLPIAPDASHFLAPVIVTLSLIAVIYIGLVAMVQTDMKK 301
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLK 830
++AYSSIAHMG + IFN + + +I++ F F I +L
Sbjct: 302 LVAYSSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLY 351
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 352 DRMHSR--QIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMV 398
>gi|307730328|ref|YP_003907552.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. CCGE1003]
gi|307584863|gb|ADN58261.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. CCGE1003]
Length = 496
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/385 (58%), Positives = 305/385 (79%), Gaps = 8/385 (2%)
Query: 211 PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P +GF S +K WI+ FNI Y LG+DG+S+WF+ LTA IT+I+++ + + I
Sbjct: 50 PLITGFDSSTADLQFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAWEVIT 109
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
K + +Y+++FLILSG+++G F A DGMLFY+FFEATLIP++IIIG WGG+NR YAA KFF
Sbjct: 110 KNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFF 169
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTLMGSLLML++++YLY I +F++ SW I Q+ LFI FF+AFA+K+P+WP+
Sbjct: 170 LYTLMGSLLMLVALLYLY-IQTGTFDLASWQHAQIAMTPQVLLFIAFFMAFAVKVPMWPV 228
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++ + ++ITLSLI++IY
Sbjct: 229 HTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIY 288
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+QMISH +S AMF+SIG
Sbjct: 289 IGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIG 348
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY++M +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF+GEFM+IL+AV++NF
Sbjct: 349 VLYDRMHSRQIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFW 408
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
I + LI AAY+L + K + F
Sbjct: 409 IAGGAAVTLILGAAYTLWMYKRVYF 433
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQHAQIAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLSIG-VLYDRMHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFVMLFSMANCGLPGTSGFVGE 395
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 68/345 (19%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + ++KN+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVIAAWEV-ITKNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ ++ S ML + LY TGT +L S +
Sbjct: 150 YIIIGVWGGANRVY---AAFKFFLYTLMGSLLMLVALLYLYIQTGTFDLASW----QHAQ 202
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLL------------ 717
I + L + + + K+ + P H W+PD + G S+++ +
Sbjct: 203 IAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 262
Query: 718 -LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
L TP S F L P+VI L++ ++I + A+ Q + K+++AY
Sbjct: 263 SLPITPDASHF----------LAPVVIT-------LSLIAVIYIGLVAMVQADMKKLVAY 305
Query: 777 SSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTC 834
SSIAHMG + IFN + + +I++ F F I +L +
Sbjct: 306 SSIAHMGFVTL----------GFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMH 355
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 356 SR--QIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMV 398
>gi|330817780|ref|YP_004361485.1| NADH dehydrogenase subunit M [Burkholderia gladioli BSR3]
gi|327370173|gb|AEA61529.1| NADH dehydrogenase subunit M [Burkholderia gladioli BSR3]
Length = 497
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/401 (55%), Positives = 304/401 (75%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ I SL+G V P +GF ++ IWID FN+ Y LG+DG+S+WF+ LT
Sbjct: 36 VALIGSLLGFA--VTIPLITGFDPSTAALQFEENAIWIDRFNVSYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + I + +++Y+++FL+LSG++IG F A DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVVAGWEVITENVSQYLASFLMLSGIMIGVFSAADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLMLI++IYLY +F++ +W + Q+ LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLIALIYLYR-ETHTFDLAAWQGAKLAMTPQLLLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLP+ PDA++
Sbjct: 213 GAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPVTPDAAH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
Y + ++I LSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ +++ I+GAI+Q
Sbjct: 273 YLAPVVIVLSLIAVIYIGLVAMVQTDMKKLVAYSSIAHMGFVTLGFFIFSQLGIEGAIVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S AMF+ IG LY+++ TR I+ +GG++NV+P F+ F ++F++ANC LPGTSGF
Sbjct: 333 MISHGFVSGAMFLCIGVLYDRLHTRNIAEYGGVVNVMPKFATFALLFAMANCGLPGTSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL++VKFNF I LI A Y+L + K + F
Sbjct: 393 VGEFMVILASVKFNFWIAFGAGLTLILGAGYTLWMYKRVYF 433
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W LA+T L F + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQGAKLAMTPQLLLFGAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + L+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPVTPDAAHYLAPVVIVLSLIAVIYIGLVAMVQTDMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+ +I +++H F +FL G ++ + H ++I GG+ MP
Sbjct: 317 GFFIFSQLGIEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHTRNIAEYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P SGF +
Sbjct: 373 ATFALLFAMANCGLPGTSGFVGE 395
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 146/343 (42%), Gaps = 64/343 (18%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ A + + +++N+ L +M+SG L ++ L+ +
Sbjct: 91 VLTALITVIVVVAGWEV-ITENVSQYLASFLMLSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T T +L +
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLIALIYLYRETHTFDLAAW-------- 198
Query: 674 INCSVLALSLLLIIVGLSF-----KLGISPFHMWVPDVY----QGASII---ITLLLSTT 721
+ LA++ L++ G F K+ + P H W+PD + G S++ I L L
Sbjct: 199 -QGAKLAMTPQLLLFGAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAY 257
Query: 722 PKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
L + + L P+VI +L++ ++I + A+ Q + K+++AYSSIAH
Sbjct: 258 GFLRFSLPVTPDAAHYLAPVVI-------VLSLIAVIYIGLVAMVQTDMKKLVAYSSIAH 310
Query: 782 MGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK 836
MG + +FS + I+ + +I +F I ++ L
Sbjct: 311 MGFVTLGFFIFSQLGIEGAIVQMISHGFVSGAMFLCIGVLYDRL---------------H 355
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
T + + G+ P A ++F + G P T GF +F +
Sbjct: 356 TRNIAEYGGVVNVMPKFATFALLFAMANCGLPGTSGFVGEFMV 398
>gi|124266608|ref|YP_001020612.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
gi|124259383|gb|ABM94377.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
Length = 491
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/385 (57%), Positives = 299/385 (77%), Gaps = 7/385 (1%)
Query: 211 PFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDI-K 263
P +GF + + WID FN+ Y LG+DG+S+WF+ LTAFIT+I+++ + ++
Sbjct: 47 PLVTGFDTATASMQFSENLAWIDRFNVRYHLGVDGISVWFVLLTAFITVIVVIAAWEVVT 106
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
+++ +YM AFLILSGL++G F ALDG+LFY+FFEATLIP++IIIG WGG R YAA KFF
Sbjct: 107 ERVNQYMGAFLILSGLMVGVFSALDGLLFYVFFEATLIPMYIIIGVWGGPRRVYAAFKFF 166
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTL+GSLLMLI++IYLYY S SF IL WH L + Q LF FF AFA+K+P+WP+
Sbjct: 167 LYTLLGSLLMLIALIYLYYKSGGSFEILEWHTLPLPMTAQTLLFFAFFAAFAVKVPMWPV 226
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFS+PI PDAS+ ++ +I LSLI+++Y
Sbjct: 227 HTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSMPIAPDASHEWAFFVIALSLIAVLY 286
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I L+A+VQ D+KKL+AYSSIAHMGFVTLG F+ ++ + G I+QMISH +S AMF+ IG
Sbjct: 287 IGLVALVQQDMKKLVAYSSIAHMGFVTLGFFIFNELGVSGGIVQMISHGFVSGAMFLCIG 346
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY+++ +R I+++GG++N +P F+ + F++ANC LPGT+GF+GE+M+IL AVKFNF
Sbjct: 347 VLYDRVHSREIASYGGVVNTMPKFTALAVFFAMANCGLPGTAGFVGEWMVILGAVKFNFW 406
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
IG+L +T LIF AAY+L + K + F
Sbjct: 407 IGLLAATTLIFGAAYTLWMVKRVYF 431
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL +TA F K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 196 WHTLPLPMTAQTLLFFAFFAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ ++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDASHEWAFFVIALSLIAVLYIGLVALVQQDMKKLVAYSSIAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGVS I +++H F +FL G ++ + H+++I + GG+ MP
Sbjct: 315 GFFIFNELGVSG---GIVQMISHGFVSGAMFLCIG-VLYDRVHSREIASYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P +GF +
Sbjct: 371 TALAVFFAMANCGLPGTAGFVGE 393
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 29/257 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + LY +G F +++ + + + A +LL
Sbjct: 161 AAFKFFLYTLLGSLLMLIALIYLYYKSG-----GSFEILEWHTLPLPMTAQTLLFFAFFA 215
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G S+++ ++ KL + + R +
Sbjct: 216 AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIML---KLGAYGFL-RFSMPIAPDASHE 271
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
W ++ L++ +++ + A+ Q + K+++AYSSIAHMG + IFN
Sbjct: 272 WAFFVIALSLIAVLYIGLVALVQQDMKKLVAYSSIAHMGFVTL----------GFFIFNE 321
Query: 805 --CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ +I++ F F I +L + ++ E+ + G+ P + + F
Sbjct: 322 LGVSGGIVQMISHGFVSGAMFLCIGVLYDRVHSR--EIASYGGVVNTMPKFTALAVFFAM 379
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF ++ +
Sbjct: 380 ANCGLPGTAGFVGEWMV 396
>gi|170696387|ref|ZP_02887516.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia graminis C4D1M]
gi|170138715|gb|EDT06914.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia graminis C4D1M]
Length = 496
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/385 (57%), Positives = 304/385 (78%), Gaps = 8/385 (2%)
Query: 211 PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P +GF S ++ WI+ FNI Y LG+DG+S+WF+ LTA IT+I+++ + I
Sbjct: 50 PLITGFDSSSADLQFVEQANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAGWEVIT 109
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
K + +Y+++FLILSG+++G F A DGMLFY+FFEATLIP++IIIG WGG+NR YAA KFF
Sbjct: 110 KNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFF 169
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTLMGSLLML++++YLY + +F++ +W I Q+ LFI FF+AFA+K+P+WP+
Sbjct: 170 LYTLMGSLLMLVALLYLY-VQTGTFDLATWQHAQIAMTPQVLLFIAFFMAFAVKVPMWPV 228
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS++ + ++ITLSLI++IY
Sbjct: 229 HTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHFLAPVVITLSLIAVIY 288
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I L+AMVQ D+KKL+AYSSIAHMGFVTLG F+ ++ ++GAI+QMISH +S AMF+SIG
Sbjct: 289 IGLVAMVQADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIG 348
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY++M +R I+++GG++NV+P F+ F ++FS+ANC LPGTSGF+GEFM+IL+AV++NF
Sbjct: 349 VLYDRMHSRQIADYGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFW 408
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
I + LI AAY+L + K + F
Sbjct: 409 IAGGAAVTLILGAAYTLWMYKRVYF 433
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W +A+T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQHAQIAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPIAPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFIFNQLGVEG---AIVQMISHGFVSGAMFLSIG-VLYDRMHSRQIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 373 AAFVMLFSMANCGLPGTSGFVGE 395
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 137/318 (43%), Gaps = 45/318 (14%)
Query: 581 CLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSLTLCVLIASQKNNIFSSE 630
++KN+ L +++SG L ++ L+ + + + + N ++
Sbjct: 107 VITKNVGQYLASFLILSGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVY--- 163
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ ++ S ML + LY TGT +L + + I + L + +
Sbjct: 164 AAFKFFLYTLMGSLLMLVALLYLYVQTGTFDLATW----QHAQIAMTPQVLLFIAFFMAF 219
Query: 691 SFKLGISPFHMWVPDVY----QGASII---ITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G S++ I L L L + I L P+VI
Sbjct: 220 AVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHFLAPVVI 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I + A+ Q + K+++AYSSIAHMG + IFN
Sbjct: 280 T-------LSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL----------GFFIFN 322
Query: 804 S--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ + +I++ F F I +L + ++ ++ + G+ P A +M+F
Sbjct: 323 QLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMHSR--QIADYGGVVNVMPKFAAFVMLFS 380
Query: 862 FSLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 381 MANCGLPGTSGFVGEFMV 398
>gi|186476752|ref|YP_001858222.1| NADH dehydrogenase subunit M [Burkholderia phymatum STM815]
gi|184193211|gb|ACC71176.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia phymatum STM815]
Length = 497
Score = 464 bits (1195), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/370 (59%), Positives = 299/370 (80%), Gaps = 2/370 (0%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
++K WI+ FNI Y LGIDG+++WF+ LTA IT+I+++ + + I K +A+Y++AFLILSG
Sbjct: 66 EEKANWIERFNITYHLGIDGIAMWFVVLTALITVIVVIAAWEVITKNVAQYLAAFLILSG 125
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
+++G FCA DGMLFY+FFEATLIP++IIIG WGG+NR YAA KFFLYTLMGSLLML+ ++
Sbjct: 126 IMVGVFCAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVGLL 185
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YLY +F++ +WH ++ Q+ LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT G
Sbjct: 186 YLY-TQTGTFDLAAWHAAKLSMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGG 244
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SV+LAAIMLKLG YG LRFSLPI PDAS++ + ++ITLSLI+++YI L+AMVQ D+KKL+
Sbjct: 245 SVVLAAIMLKLGAYGFLRFSLPIAPDASHFLAPVVITLSLIAVVYIGLVAMVQADMKKLV 304
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG F+ ++ +GAI+QMISH +S AMF+ IG LY++M +R I+++G
Sbjct: 305 AYSSIAHMGFVTLGFFIFNQLGTEGAIVQMISHGFVSGAMFLCIGVLYDRMHSRQIADYG 364
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G++N +P F+ ++FS+ANC LPGTSGF+GEFM+IL+AV++NF I + LI AAY
Sbjct: 365 GVVNTMPKFAALVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAVTLILGAAY 424
Query: 579 SLCLSKNIIF 588
+L + K + F
Sbjct: 425 TLWMYKRVYF 434
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 111/205 (54%), Gaps = 18/205 (8%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 199 WHAAKLSMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 257
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 258 YGFLRFSLPIAPDASHFLAPVVITLSLIAVVYIGLVAMVQADMKKLVAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 318 GFFIFNQLGTEG---AIVQMISHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVVNTMP-- 371
Query: 197 CITSLIGLLSLV--GAPFFSGFYSK 219
+L+ L S+ G P SGF +
Sbjct: 372 KFAALVMLFSMANCGLPGTSGFVGE 396
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 154/335 (45%), Gaps = 48/335 (14%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + ++KN+ L +++SG L ++ L+ +
Sbjct: 92 VLTALITVIVVIAAWEV-ITKNVAQYLAAFLILSGIMVGVFCAADGMLFYVFFEATLIPM 150
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ ++ S ML G+ LY TGT +L + ++ KL+
Sbjct: 151 YIIIGVWGGANRVY---AAFKFFLYTLMGSLLMLVGLLYLYTQTGTFDLAA-WHAAKLSM 206
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII---ITLLLSTTPKLSL 726
+L ++ L + K+ + P H W+PD + G S++ I L L L
Sbjct: 207 TPQVLLFIAFFL---AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 263
Query: 727 FVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLML 786
+ I L P+VI L++ +++ + A+ Q + K+++AYSSIAHMG +
Sbjct: 264 SLPIAPDASHFLAPVVIT-------LSLIAVVYIGLVAMVQADMKKLVAYSSIAHMGFVT 316
Query: 787 FSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFI 844
IFN + + +I++ F F I +L + ++ ++ +
Sbjct: 317 L----------GFFIFNQLGTEGAIVQMISHGFVSGAMFLCIGVLYDRMHSR--QIADYG 364
Query: 845 GLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A ++M+F + G P T GF +F +
Sbjct: 365 GVVNTMPKFAALVMLFSMANCGLPGTSGFVGEFMV 399
>gi|347818879|ref|ZP_08872313.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 491
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/408 (54%), Positives = 310/408 (75%), Gaps = 9/408 (2%)
Query: 188 GLYKYMPITCITSLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDG 239
G ++ P+ +L+G LV P + GF +K WI+ FN++Y LG+DG
Sbjct: 22 GRDEHAPMVRWMALLGAAFGFLVTLPLYGGFDPGSAAMQFVEKAAWIERFNVHYHLGVDG 81
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+SLWF+PLTAFITLI++L S + I +++ +YM AFLILSGL+IG F ALDG+LFY+FFEA
Sbjct: 82 ISLWFVPLTAFITLIVVLASWEAITERVNQYMGAFLILSGLMIGVFSALDGILFYVFFEA 141
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
TLIP+++IIG WGG N+ YAA KFFLYTL+GSLLMLI++IYLY S SF+I +WH+L +
Sbjct: 142 TLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLIALIYLYNQSGGSFDIATWHRLPL 201
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q LF FF AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG +RFS
Sbjct: 202 GGQAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFVRFS 261
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LPI PDA+ ++ L+I LSLI+++Y+ L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ +
Sbjct: 262 LPIAPDAAREWAWLMIALSLIAVVYVGLVALVQTDMKKLVAYSSVAHMGFVTLGFFLFNE 321
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+ + GA++QMI+H +S AMF+ IG LY ++ +R I+ +GG++ +P F+ F ++F++AN
Sbjct: 322 LGVSGALVQMIAHGFVSGAMFLCIGVLYERVHSREIAAYGGVVETMPRFTAFALLFAMAN 381
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
C LP T+GF+GE+M+IL AVK +F IG++ +TAL+F AAY+L + K +
Sbjct: 382 CGLPATAGFVGEWMVILGAVKADFWIGLVAATALVFGAAYTLWMVKRV 429
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL A F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHRLPLGGQAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + + +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFVRFSLPIAPDAAREWAWLMIALSLIAVVYVGLVALVQTDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS ++ ++ H F +FL G ++ H+++I GG+ + M
Sbjct: 312 VTLGFFLFNELGVSG---ALVQMIAHGFVSGAMFLCIG-VLYERVHSREIAAYGGVVETM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PRFTAFALLFAMANCGLPATAGFVGE 393
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 127/291 (43%), Gaps = 40/291 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIYLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHRLPLGGQAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ +++ + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFV-RFSLPIAPDAAREWAWLMIALSLIAVVYVGLVALVQTDMKKL 300
Query: 774 IAYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
+AYSS+AHMG + LF+ + + + +I +F I ++ +
Sbjct: 301 VAYSSVAHMGFVTLGFFLFNELGVSGALVQMIAHGFVSGAMFLCIGVLYERV-------- 352
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ E+ + G+ + P ++F + G P T GF ++ +
Sbjct: 353 -------HSREIAAYGGVVETMPRFTAFALLFAMANCGLPATAGFVGEWMV 396
>gi|339484285|ref|YP_004696071.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrosomonas sp. Is79A3]
gi|338806430|gb|AEJ02672.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrosomonas sp. Is79A3]
Length = 494
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/401 (55%), Positives = 310/401 (77%), Gaps = 9/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I+ + S++GLL V P F+ F S + +W + FN+ Y LG+DG+S+ I L
Sbjct: 37 ISLVGSIMGLL--VAIPLFTSFDSTTGAMQFIENHVWFERFNVNYHLGVDGISMPLILLN 94
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
FIT ++I+ + IK+++++YM AFLI+SG++ G F +LD +LFY+F+EA+LIP+F+II
Sbjct: 95 CFITPLVIVAGWEVIKERVSQYMGAFLIMSGIVNGVFASLDAILFYVFWEASLIPMFLII 154
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAAIKFFLYTL+GSLLMLI+ IYLY S SF+I +H+L+I QI +F
Sbjct: 155 GIWGGPNRVYAAIKFFLYTLLGSLLMLIAFIYLYQESGGSFSIEDYHKLAIPLTPQILIF 214
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ F +AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAI+LKLG YG LRFSLPI PDAS+
Sbjct: 215 VAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAILLKLGGYGFLRFSLPIAPDASH 274
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
Y + ++I LSLI+++YI LIA++Q+D+KKLIAYSS+AHMGFVTLG F+L I+GA++Q
Sbjct: 275 YLATMMIVLSLIAVVYIGLIALMQVDMKKLIAYSSVAHMGFVTLGFFLLNAYGIEGAMVQ 334
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH IS AMF+ +G LY+++ +R I+++GG++N +P F+ FF++F++AN LPGTSGF
Sbjct: 335 MISHGFISGAMFLCVGVLYDRLHSRQIADYGGVVNKMPVFAAFFMLFAMANAGLPGTSGF 394
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+SA+K NF L +T LIF AAY+L + K +IF
Sbjct: 395 VGEFMVIMSAMKVNFWYAFLAATTLIFGAAYTLWMYKRVIF 435
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLPD+ +E PT S ++ AA ++ G + R S P+ + S+ ++++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSVVL-AAILLKLGGYGFLRFSLPIAPDASHYLATMMIV 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLG-VSAYTV--SIFHLMTHAFFK 163
+ I ++GL+ ++Q D+K++IAYS+++ +G++T+G ++AY + ++ +++H F
Sbjct: 283 LSLIAVVYIGLIALMQVDMKKLIAYSSVAHMGFVTLGFFLLNAYGIEGAMVQMISHGFIS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+FL G ++ + H++ I + GG+ MP+ ++ ++ G P SGF +
Sbjct: 343 GAMFLCVG-VLYDRLHSRQIADYGGVVNKMPVFAAFFMLFAMANAGLPGTSGFVGE 397
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 129/289 (44%), Gaps = 36/289 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N ++ AAIK+F+ +L S ML LY +G
Sbjct: 138 LFYVFWEASLIPMFLIIGIWGGPNRVY---AAIKFFLYTLLGSLLMLIAFIYLYQESG-- 192
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
F++ + + + L+ + L+F K+ + P H W+PD + A
Sbjct: 193 ---GSFSIEDYHKLAIPLTPQILIFVAFLLAFAVKVPMWPVHTWLPDAHVEAP------- 242
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + ++++L++ +++ + A+ Q +
Sbjct: 243 -TGGSVVLAAILLKLGGYGFLRFSLPIAPDASHYLATMMIVLSLIAVVYIGLIALMQVDM 301
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
K++IAYSS+AHMG + + + + +I++ F F + +L
Sbjct: 302 KKLIAYSSVAHMGFVTLGFFLLNA--------YGIEGAMVQMISHGFISGAMFLCVGVLY 353
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ + P A M+F + AG P T GF +F +
Sbjct: 354 DRLHSR--QIADYGGVVNKMPVFAAFFMLFAMANAGLPGTSGFVGEFMV 400
>gi|237748879|ref|ZP_04579359.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes
OXCC13]
gi|229380241|gb|EEO30332.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes
OXCC13]
Length = 497
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/369 (59%), Positives = 288/369 (78%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI F++ Y LG+DG+S+WF+ L+A ITLI+++ + I+K++A+YM AFLILSGL
Sbjct: 71 ERHSWIKLFHVEYALGVDGISMWFVLLSALITLIVVIAGWNVIQKQIAQYMGAFLILSGL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F DG+LFY+FFEATLIP+F+IIG WGG R YAA KFFLYT GSL MLI ++Y
Sbjct: 131 MIGVFSTFDGLLFYVFFEATLIPMFVIIGVWGGERRVYAAFKFFLYTFFGSLPMLIGILY 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY +N SFNI +W+ I QIWLFI F AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LYLQTN-SFNIFTWYNAPIPLNVQIWLFIAFLTAFAVKVPMWPVHTWLPDAHVEAPTGGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAA+MLKLG YG +RFSLPI PDAS + L+I LSLI++IYI L+A+VQ D+KKLIA
Sbjct: 250 VILAALMLKLGAYGFIRFSLPILPDASRTLAWLMIALSLIAVIYIGLVALVQKDMKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ I++ GA++QMISH +S+AMF+ +G LY++M TR I+++GG
Sbjct: 310 YSSIAHMGFVTLGFFLFENITVDGALVQMISHGFVSAAMFLCVGVLYDRMHTRQIADYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ V+P F+ FF++F+LANC LPGTSGF+GE M+IL AVK N IG + ALI AAY+
Sbjct: 370 VAFVMPRFAAFFVLFALANCGLPGTSGFVGEVMVILGAVKVNVWIGAAGALALILGAAYT 429
Query: 580 LCLSKNIIF 588
L + K +++
Sbjct: 430 LWMIKRVLY 438
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
WY+ P+ + + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 203 WYNAPIPLNVQIWLFIAFLTAFAVKVPMWPVHTWLPDAHVEAPTGGSVIL-AALMLKLGA 261
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S T +++ + I ++GL+ ++Q D+K++IAYS+++ +G++T+
Sbjct: 262 YGFIRFSLPILPDASRTLAWLMIALSLIAVIYIGLVALVQKDMKKLIAYSSIAHMGFVTL 321
Query: 143 GLGV-SAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + TV ++ +++H F A +FL G ++ + H + I + GG+ MP
Sbjct: 322 GFFLFENITVDGALVQMISHGFVSAAMFLCVG-VLYDRMHTRQIADYGGVAFVMPRFAAF 380
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ L+ G P SGF +
Sbjct: 381 FVLFALANCGLPGTSGFVGE 400
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 30/254 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ S ML GI LY T + + + +N I +V + +
Sbjct: 169 AAFKFFLYTFFGSLPMLIGILYLYLQTNSFNIFTWYNA----PIPLNVQIWLFIAFLTAF 224
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + G S+I+ L+ KL + I+ LP++ +
Sbjct: 225 AVKVPMWPVHTWLPDAHVEAPTGGSVILAALML---KLGAYG-----FIRFSLPILPDAS 276
Query: 747 K----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ +++ L++ ++I + A+ Q + K++IAYSSIAHMG + +
Sbjct: 277 RTLAWLMIALSLIAVIYIGLVALVQKDMKKLIAYSSIAHMGFVTLGFFLFENI------- 329
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ D L +I++ F F + +L + T ++ + G+ P A ++F
Sbjct: 330 -TVDGALVQMISHGFVSAAMFLCVGVLYDRM--HTRQIADYGGVAFVMPRFAAFFVLFAL 386
Query: 863 SLAGFPPTIGFYAK 876
+ G P T GF +
Sbjct: 387 ANCGLPGTSGFVGE 400
>gi|257095307|ref|YP_003168948.1| NADH dehydrogenase subunit M [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047831|gb|ACV37019.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 494
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/404 (53%), Positives = 302/404 (74%), Gaps = 9/404 (2%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGFYSKDKK------KIWIDYFNIYYFLGIDGLSLWFI 245
P+ + SL+G ++ LV P ++GF K WI FN+ Y LG+DG+S+ F+
Sbjct: 31 PLARMLSLLGAVAGLLVTIPLYTGFDMLTPAMQFVELKTWIPRFNVNYHLGVDGISMLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L +FIT+ +IL I K+A+Y + FLI+SGL+ G F ALDG+LFY+FFEA+LIP++
Sbjct: 91 ILNSFITVTVILAGWQVIDSKVAQYNAGFLIMSGLLNGIFSALDGLLFYVFFEASLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
+IIG WGG R YAA KFFL+TLMGSLL LI+++Y++ S SF+IL WHQ+ + + Q
Sbjct: 151 LIIGIWGGPRRVYAAFKFFLFTLMGSLLFLIALLYMFIQSGGSFSILDWHQMPLGRTPQT 210
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
WLF+ F IAFA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LKLG YG LRFSLPI PD
Sbjct: 211 WLFLAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIALKLGAYGFLRFSLPIAPD 270
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
AS+ S L+I LSLI+IIYI +A+ Q D+KKL+AYSSIAHMGFVTLG FM + + ++GA
Sbjct: 271 ASHQLSGLVIGLSLIAIIYIGFVALAQEDMKKLVAYSSIAHMGFVTLGFFMFSALGVEGA 330
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
++QMISH +S AMF SIG +Y++ +R I+++GG++N +P F+ FF++F++AN LP T
Sbjct: 331 LVQMISHGFVSGAMFFSIGVMYDRAHSRQIADYGGVVNRMPKFAAFFMLFAMANAGLPAT 390
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL+AV++NF + ++ +I AAY+L + K ++F
Sbjct: 391 SGFVGEFMVILAAVEYNFWVAFAAASTMIVGAAYTLWMYKRVVF 434
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL T FL I K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 199 WHQMPLGRTPQTWLFLAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIALKLGA 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS +++ + I ++G + + Q D+K+++AYS+++ +G++T+
Sbjct: 258 YGFLRFSLPIAPDASHQLSGLVIGLSLIAIIYIGFVALAQEDMKKLVAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV ++ +++H F +F S G ++ + H++ I + GG+ MP
Sbjct: 318 GFFMFSALGVEG---ALVQMISHGFVSGAMFFSIG-VMYDRAHSRQIADYGGVVNRMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 374 AAFFMLFAMANAGLPATSGFVGE 396
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 133/290 (45%), Gaps = 38/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ L L + I ++ AA K+F+ ++ S +L+ I++LY +
Sbjct: 137 LFYVFFEASLIPLYLIIGIWGGPRRVY---AAFKFFLFTLMGS--LLFLIALLYMF---I 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVYQGASIIITLLL 718
+ F+++ + + + L + ++ + K+ + P H W+PD + A +++L
Sbjct: 189 QSGGSFSILDWHQMPLGRTPQTWLFLAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSIVL 248
Query: 719 STTPKLSLFVIIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMI 774
+ ++L + Y L + LP+ + +++ L++ ++I A+ Q + K+++
Sbjct: 249 AA---IALKLGAYGFL-RFSLPIAPDASHQLSGLVIGLSLIAIIYIGFVALAQEDMKKLV 304
Query: 775 AYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
AYSSIAHMG + +FS + ++ + +I +F+ I ++
Sbjct: 305 AYSSIAHMGFVTLGFFMFSALGVEGALVQMISHGFVSGAMFFSIGVMY------------ 352
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ + G+ R P A M+F + AG P T GF +F +
Sbjct: 353 ---DRAHSRQIADYGGVVNRMPKFAAFFMLFAMANAGLPATSGFVGEFMV 399
>gi|390572957|ref|ZP_10253149.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia terrae
BS001]
gi|420253873|ref|ZP_14756907.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. BT03]
gi|389935075|gb|EIM97011.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia terrae
BS001]
gi|398050749|gb|EJL43099.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. BT03]
Length = 497
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/386 (57%), Positives = 305/386 (79%), Gaps = 4/386 (1%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
++K WI+ FNI Y LGIDG+++WF+ LTA IT+I+++ + + I K +A+Y++AFLILSG
Sbjct: 66 EEKANWIERFNITYHLGIDGIAMWFVVLTALITVIVVIAAWEVITKNVAQYLAAFLILSG 125
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
+++G F + DGMLFY+FFEATLIP++IIIG WGG+NR YAA KFFLYTLMGSLLML+ ++
Sbjct: 126 IMVGVFSSADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVGLL 185
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YLY + +F++ +WH ++ Q+ LFI FF+AFA+K+P+WP+HTWLPDAHVEAPT G
Sbjct: 186 YLY-TATGTFDLATWHAAKLSMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGG 244
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SV+LAAIMLKLG YG LRFSLPI PDAS+ + ++ITLSLI+++YI L+AMVQ D+KKL+
Sbjct: 245 SVVLAAIMLKLGAYGFLRFSLPIAPDASHLLAPVVITLSLIAVVYIGLVAMVQADMKKLV 304
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG F+ ++ +GAI+QMISH +S AMF+ IG LY++M +R I+++G
Sbjct: 305 AYSSIAHMGFVTLGFFIFNQLGTEGAIVQMISHGFVSGAMFLCIGVLYDRMHSRQIADYG 364
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G++N +P F+ ++FS+ANC LPGTSGF+GEFM+IL+AV++NF I + LI AAY
Sbjct: 365 GVVNTMPKFAALVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAVTLILGAAY 424
Query: 579 SLCLSKNIIFVLGQMIMISGNNLLSI 604
+L + K + F G ++ NL+ I
Sbjct: 425 TLWMYKRVYF--GAVVNDHVKNLVDI 448
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 111/205 (54%), Gaps = 18/205 (8%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 199 WHAAKLSMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 257
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 258 YGFLRFSLPIAPDASHLLAPVVITLSLIAVVYIGLVAMVQADMKKLVAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG +I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 318 GFFIFNQLGTEG---AIVQMISHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVVNTMP-- 371
Query: 197 CITSLIGLLSLV--GAPFFSGFYSK 219
+L+ L S+ G P SGF +
Sbjct: 372 KFAALVMLFSMANCGLPGTSGFVGE 396
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 154/335 (45%), Gaps = 48/335 (14%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + ++KN+ L +++SG L ++ L+ +
Sbjct: 92 VLTALITVIVVIAAWEV-ITKNVAQYLAAFLILSGIMVGVFSSADGMLFYVFFEATLIPM 150
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ ++ S ML G+ LY TGT +L + ++ KL+
Sbjct: 151 YIIIGVWGGANRVY---AAFKFFLYTLMGSLLMLVGLLYLYTATGTFDLAT-WHAAKLSM 206
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII---ITLLLSTTPKLSL 726
+L ++ L + K+ + P H W+PD + G S++ I L L L
Sbjct: 207 TPQVLLFIAFFL---AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 263
Query: 727 FVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLML 786
+ I L P+VI L++ +++ + A+ Q + K+++AYSSIAHMG +
Sbjct: 264 SLPIAPDASHLLAPVVIT-------LSLIAVVYIGLVAMVQADMKKLVAYSSIAHMGFVT 316
Query: 787 FSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFI 844
IFN + + +I++ F F I +L + ++ ++ +
Sbjct: 317 L----------GFFIFNQLGTEGAIVQMISHGFVSGAMFLCIGVLYDRMHSR--QIADYG 364
Query: 845 GLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A ++M+F + G P T GF +F +
Sbjct: 365 GVVNTMPKFAALVMLFSMANCGLPGTSGFVGEFMV 399
>gi|358638056|dbj|BAL25353.1| NADH dehydrogenase subunit M [Azoarcus sp. KH32C]
Length = 493
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/365 (58%), Positives = 290/365 (79%), Gaps = 1/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI FNI Y LG+DG+S+ F+ L AFIT+++++ I++K+A+YM+AFLI+SGL+ G
Sbjct: 70 WIPRFNINYHLGVDGISVLFVLLNAFITIMVVMAGWQVIQEKVAQYMAAFLIMSGLMNGI 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALDG+LFY+FFEA+LIP++++IG WGG NR YAAIKFFLYTL+GSL+MLI+++YL+
Sbjct: 130 FSALDGILFYVFFEASLIPLYLVIGVWGGPNRVYAAIKFFLYTLIGSLMMLIALLYLFME 189
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SFNIL WH L + Q +F F +AFA+K+P+WP+HTWLPDAHVEAPT GSV+LA
Sbjct: 190 AGGSFNILEWHNLPLGSSAQHLIFWAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LKLG YG LRFSLPI PDAS + ++ITLSLI++IYI +A+VQ D+KKL+AYSSI
Sbjct: 250 AIALKLGAYGFLRFSLPIVPDASQAMAPMMITLSLIAVIYIGFVALVQTDMKKLVAYSSI 309
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFVTLG FM + I+GA++QMISH +S AMF+ IG LY+++ +R I+++GG++N
Sbjct: 310 SHMGFVTLGFFMFNPVGIEGALVQMISHGFVSGAMFLCIGVLYDRVHSRNIADYGGVVNT 369
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ FF++FS+AN LPGTSGFIGEFM++L AV+FNF + +T LI AAY+L +
Sbjct: 370 MPKFAAFFMLFSMANAGLPGTSGFIGEFMVVLGAVQFNFWVAFAAATTLIMGAAYTLWMY 429
Query: 584 KNIIF 588
K ++F
Sbjct: 430 KRVVF 434
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W++ PL +A F + K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 199 WHNLPLGSSAQHLIFWAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIALKLGA 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ A++ +++ + I ++G + ++Q D+K+++AYS++S +G++T+
Sbjct: 258 YGFLRFSLPIVPDASQAMAPMMITLSLIAVIYIGFVALVQTDMKKLVAYSSISHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ ++ +++H F +FL G ++ + H+++I + GG+ MP
Sbjct: 318 GFFMFNPVGIEG---ALVQMISHGFVSGAMFLCIG-VLYDRVHSRNIADYGGVVNTMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 374 AAFFMLFSMANAGLPGTSGFIGE 396
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 136/290 (46%), Gaps = 38/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ L L + + N ++ AAIK+F+ ++ S ML + L+ +
Sbjct: 137 LFYVFFEASLIPLYLVIGVWGGPNRVY---AAIKFFLYTLIGSLMMLIALLYLF-----M 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLL--IIVGLSFKLGISPFHMWVPDVYQGASIIITLLL 718
E FN+++ +N+ A L+ ++ + K+ + P H W+PD + A +++L
Sbjct: 189 EAGGSFNILEWHNLPLGSSAQHLIFWAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL 248
Query: 719 STTPKLSLFVIIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMI 774
+ ++L + Y L + LP+V + + +++ L++ ++I A+ Q + K+++
Sbjct: 249 AA---IALKLGAYGFL-RFSLPIVPDASQAMAPMMITLSLIAVIYIGFVALVQTDMKKLV 304
Query: 775 AYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
AYSSI+HMG + +F+ + I+ + +I +F I ++
Sbjct: 305 AYSSISHMGFVTLGFFMFNPVGIEGALVQMISHGFVSGAMFLCIGVLYD----------- 353
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ N D + G+ P A M+F + AG P T GF +F +
Sbjct: 354 RVHSRNIAD----YGGVVNTMPKFAAFFMLFSMANAGLPGTSGFIGEFMV 399
>gi|395004012|ref|ZP_10388101.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidovorax sp. CF316]
gi|394318112|gb|EJE54582.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidovorax sp. CF316]
Length = 491
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/399 (56%), Positives = 310/399 (77%), Gaps = 9/399 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ + S+IG L V P + GF +K WI+ FN++Y LG+DG+S WF+PLT
Sbjct: 33 LALLGSVIGFL--VTIPLYQGFKLGTAAMQFVEKSEWIERFNVHYHLGVDGISFWFVPLT 90
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AFIT+I+++ S + I +++ +YM AFLILSGL+IG F ALDG+LFY+FFEATLIP+++II
Sbjct: 91 AFITVIVVIASWEAITERVNQYMGAFLILSGLMIGVFSALDGILFYVFFEATLIPMYLII 150
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG N+ YAA KFFLYTL+GSLLMLI++I+LY S SF+I +WH+L ++ Q LF
Sbjct: 151 GIWGGPNKIYAAFKFFLYTLLGSLLMLIALIFLYNQSGGSFDIATWHKLPLSSTAQTLLF 210
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
FF AFA+K+P++P HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDA+
Sbjct: 211 FAFFAAFAVKVPMFPFHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDAAR 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
++ L+ITLSLI++IY+ L+AMVQ D+KKL+AYSS+AHMGFVTLG F+ + + G ++Q
Sbjct: 271 EWAWLMITLSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MI+H +S AMF+SIG LY+++ +R I+ +GG++N +P+F+ F ++F++ANC LPGT+GF
Sbjct: 331 MIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
+GE+M+IL AVK NF IG+ ++TALIF AAY+L + K +
Sbjct: 391 VGEWMVILGAVKANFWIGLASATALIFGAAYTLWMFKRV 429
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ TA F K FP HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHKLPLSSTAQTLLFFAFFAAFAVKVPMFPFHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + + +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSMPIAPDAAREWAWLMITLSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS + ++ H F +FLS G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GLVQMIAHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PNFTAFALLFAMANCGLPGTAGFVGE 393
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIFLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + PFH W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHKLPLSSTAQTLLFFAFFAAFAVKVPMFPFHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDAAREWAWLMITLSLIAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|413958280|ref|ZP_11397519.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia sp. SJ98]
gi|413940860|gb|EKS72820.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia sp. SJ98]
Length = 499
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/404 (55%), Positives = 313/404 (77%), Gaps = 13/404 (3%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ + S++GL+ V P +GF + ++ WI+ FNI Y LG+DG+S+WF+ LT
Sbjct: 36 VALVGSVLGLI--VTIPLITGFDTSTAALQFVEQSNWIERFNITYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+I+++ + I +++++YM+AFLILSG++IG F DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVIVVIAGWEVITERVSQYMAAFLILSGIMIGVFSTADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML++++YLY +F++ +W + Q+ LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALLYLY-TQTHTFDLATWQAAKLDMTPQVLLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML---TKISIQGA 484
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG FM ++++++GA
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQSDMKKLVAYSSIAHMGFVTLGFFMFGASSQLAVEGA 332
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
IIQMISH +S AMF+SIG LY+++ +R I+++GG++N +P F+ F ++F++ANC LPGT
Sbjct: 333 IIQMISHGFVSGAMFLSIGVLYDRVHSRQIADYGGVVNTMPKFAAFVMLFAMANCGLPGT 392
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL+AVK+NF I L + LI AAY+L + K + F
Sbjct: 393 SGFVGEFMVILAAVKYNFWIAFLATFTLILGAAYTLWMYKRVYF 436
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 119/234 (50%), Gaps = 18/234 (7%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L +T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQAAKLDMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q+D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPIAPDASHFLAPVVITLSLIAVIYIGLVAMVQSDMKKLVAYSSIAHMGFVTL 316
Query: 143 G---LGVS---AYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G G S A +I +++H F +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 GFFMFGASSQLAVEGAIIQMISHGFVSGAMFLSIG-VLYDRVHSRQIADYGGVVNTMPKF 375
Query: 197 CITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYFNIYYFLGIDGLSLW 243
++ ++ G P SGF + K WI + + + +LW
Sbjct: 376 AAFVMLFAMANCGLPGTSGFVGEFMVILAAVKYNFWIAFLATFTLILGAAYTLW 429
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 126/286 (44%), Gaps = 28/286 (9%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ + S ML + LY T T
Sbjct: 137 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALLYLYTQTHTF 193
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII--- 713
+L + + KL+ +L ++ L + K+ + P H W+PD + G S++
Sbjct: 194 DLAT-WQAAKLDMTPQVLLFIAFFL---AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA 249
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
I L L L + I L P+VI L++ ++I + A+ Q + K++
Sbjct: 250 IMLKLGAYGFLRFSLPIAPDASHFLAPVVIT-------LSLIAVIYIGLVAMVQSDMKKL 302
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
+AYSSIAHMG + S + + + +I++ F F I +L +
Sbjct: 303 VAYSSIAHMGFVTLGFFMFGASSQ-----LAVEGAIIQMISHGFVSGAMFLSIGVLYDRV 357
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 358 HSR--QIADYGGVVNTMPKFAAFVMLFAMANCGLPGTSGFVGEFMV 401
>gi|456063092|ref|YP_007502062.1| Proton-translocating NADH-quinone oxidoreductase, chain M [beta
proteobacterium CB]
gi|455440389|gb|AGG33327.1| Proton-translocating NADH-quinone oxidoreductase, chain M [beta
proteobacterium CB]
Length = 488
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/369 (59%), Positives = 298/369 (80%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI ++I Y+LGIDG+S+WFI LTAFI + +++ + + I KK+++YM++FLILSGL
Sbjct: 62 EKISWIPRYDINYYLGIDGISVWFIVLTAFINIFVVIAAWEVIDKKVSQYMASFLILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL LI+M+Y
Sbjct: 122 MIGVFAALDALLFYVFFEATLIPMYIIIGVWGGHNRIYAAFKFFLYTLLGSLLTLIAMLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++N +F+IL+WH + +EQI LF FF+AFA+K+P+WP+HTWLPD HVEAPT GS
Sbjct: 182 LYNVTN-TFDILAWHNARLDIVEQILLFFAFFMAFAVKVPMWPLHTWLPDVHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS Y +I LSL+++IY+ +A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVIFLSLVAVIYVGAVALVQKDMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG F+ + + I+G I+QMISH ++ AMF+SIG LY++M TR I+++GG
Sbjct: 301 YSSVAHMGFVTLGFFLFSPLGIEGGIVQMISHGFVAGAMFLSIGVLYDRMHTRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+++ +P F+ F ++ ++ANC LP TSGF+GEFM+IL+AV ++F IG+L +TALI AAYS
Sbjct: 361 VVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMVILAAVDYDFVIGILAATALILGAAYS 420
Query: 580 LCLSKNIIF 588
L + K + F
Sbjct: 421 LWMVKRVFF 429
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W++ L I + F + K +PLHTWLPD +E PT S ++ AA M+ G
Sbjct: 194 WHNARLDIVEQILLFFAFFMAFAVKVPMWPLHTWLPDVHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L ++F+ + ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASQYLGPFVIFLSLVAVIYVGAVALVQKDMKKLVAYSSVAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+ I +++H F +FLS G ++ + H + I + GG+ MP
Sbjct: 313 GFFLFSPLGIEG---GIVQMISHGFVAGAMFLSIG-VLYDRMHTRQIADYGGVVHRMPAF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 369 TAFAVLMAMANCGLPATSGFVGE 391
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 47/294 (15%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N I+ AA K+F+ +L S L + LY +T T
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGHNRIY---AAFKFFLYTLLGSLLTLIAMLYLYNVTNT- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
F+++ +N ++ LL ++F K+ + P H W+PDV+ A
Sbjct: 189 -----FDILAWHNARLDIVEQILLFFAFFMAFAVKVPMWPLHTWLPDVHVEAP------- 236
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + + L + L++ ++I A+ Q +
Sbjct: 237 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVIFLSLVAVIYVGAVALVQKDM 295
Query: 771 KRMIAYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
K+++AYSS+AHMG + LFS + I + G+ +I++ F F
Sbjct: 296 KKLVAYSSVAHMGFVTLGFFLFSPLGI-------------EGGIVQMISHGFVAGAMFLS 342
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
I +L + T ++ + G+ R P ++ + G P T GF +F +
Sbjct: 343 IGVLYDRM--HTRQIADYGGVVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMV 394
>gi|325983277|ref|YP_004295679.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Nitrosomonas sp. AL212]
gi|325532796|gb|ADZ27517.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrosomonas sp. AL212]
Length = 494
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/401 (54%), Positives = 308/401 (76%), Gaps = 9/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I S++G L V P ++ F S + +W + FN+ Y +G+DG+S+ I L
Sbjct: 37 IALIGSILGFL--VAIPLYTNFDSTTGAMQFLEDHVWFERFNVNYHIGVDGISMPLILLN 94
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
FIT ++++ + IK+++++Y+ AFL++SG++ G F +LD +LFY+F+EA+LIP+F+II
Sbjct: 95 CFITPLVVVAGWEVIKERVSQYLGAFLVMSGIVNGVFSSLDAVLFYVFWEASLIPMFLII 154
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAAIKFFLYTL+GSLLMLI+ IYLY+ S SF+I +H+L+I QI +F
Sbjct: 155 GIWGGPNRVYAAIKFFLYTLLGSLLMLIAFIYLYHASEGSFSIEDYHKLAIPMTPQILIF 214
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I F +AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAI+LKLG YG LRFSLPI PDAS+
Sbjct: 215 IAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAILLKLGGYGFLRFSLPIAPDASH 274
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
Y + ++I LSL++++YI LIA++Q+D+KKLIAYSS+AHMGFVTLG F+L I+G ++Q
Sbjct: 275 YLAEMMIVLSLVAVVYIGLIALMQVDMKKLIAYSSVAHMGFVTLGFFLLNAYGIEGGMVQ 334
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH IS AMF+ +G LY+++ +R I+++GG++N +P F+ FF++F++AN LPGTSGF
Sbjct: 335 MISHGFISGAMFLCVGVLYDRLHSRQIADYGGVVNKMPVFAAFFMLFAMANAGLPGTSGF 394
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+SAVK NF L +T LIF AAY+L + K +IF
Sbjct: 395 VGEFMVIMSAVKVNFWYAFLAATTLIFGAAYTLWMYKRVIF 435
Score = 77.8 bits (190), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLPD+ +E PT S ++ AA ++ G + R S P+ + S+ +++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSVVL-AAILLKLGGYGFLRFSLPIAPDASHYLAEMMIV 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLG-VSAYTVS--IFHLMTHAFFK 163
+ + ++GL+ ++Q D+K++IAYS+++ +G++T+G ++AY + + +++H F
Sbjct: 283 LSLVAVVYIGLIALMQVDMKKLIAYSSVAHMGFVTLGFFLLNAYGIEGGMVQMISHGFIS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+FL G ++ + H++ I + GG+ MP+ ++ ++ G P SGF +
Sbjct: 343 GAMFLCVG-VLYDRLHSRQIADYGGVVNKMPVFAAFFMLFAMANAGLPGTSGFVGE 397
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 131/289 (45%), Gaps = 36/289 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N ++ AAIK+F+ +L S ML LY +
Sbjct: 138 LFYVFWEASLIPMFLIIGIWGGPNRVY---AAIKFFLYTLLGSLLMLIAFIYLYHAS--- 191
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
+ F++ + + + L+ I L+F K+ + P H W+PD + A
Sbjct: 192 --EGSFSIEDYHKLAIPMTPQILIFIAFLLAFAVKVPMWPVHTWLPDAHVEAP------- 242
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + +++++L++ +++ + A+ Q +
Sbjct: 243 -TGGSVVLAAILLKLGGYGFLRFSLPIAPDASHYLAEMMIVLSLVAVVYIGLIALMQVDM 301
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
K++IAYSS+AHMG + + + G+ +I++ F F + +L
Sbjct: 302 KKLIAYSSVAHMGFVTLGFFLLNA--------YGIEGGMVQMISHGFISGAMFLCVGVLY 353
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ + P A M+F + AG P T GF +F +
Sbjct: 354 DRLHSR--QIADYGGVVNKMPVFAAFFMLFAMANAGLPGTSGFVGEFMV 400
>gi|120609962|ref|YP_969640.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax citrulli AAC00-1]
gi|120588426|gb|ABM31866.1| NADH dehydrogenase subunit M [Acidovorax citrulli AAC00-1]
Length = 491
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/399 (57%), Positives = 311/399 (77%), Gaps = 9/399 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SLIGL V P SGF + +K +WI+ FN++Y LG+DG+S WF+PLT
Sbjct: 33 IALIGSLIGLA--VTLPLLSGFDNGTAAAQFVEKLLWIERFNVHYHLGLDGISFWFVPLT 90
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AFIT+I+++ S + I +++ +YM AFLILSGL+IG F ALDG+LFY+FFEATLIP+++II
Sbjct: 91 AFITVIVVIASWESITERVNQYMGAFLILSGLMIGVFSALDGLLFYVFFEATLIPMYLII 150
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG N+ YAA KFFLYTL+GSLLMLI+++YLY S SF+I +WHQL ++ Q LF
Sbjct: 151 GIWGGPNKIYAAFKFFLYTLLGSLLMLIALVYLYNQSGGSFDIATWHQLPLSARAQTLLF 210
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
FF AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDA+
Sbjct: 211 FAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDAAR 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+++ L+I LSLI++IY+ L+AMVQ D+KKL+AYSS+AHMGFVTLG F+ + + G ++Q
Sbjct: 271 HWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MI+H +S AMF+SIG LY+++ +R I+ +GG++N +P F+ F ++F++ANC LPGT+GF
Sbjct: 331 MIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLPGTAGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
+GE+M+IL AVK NF IG+ +TALIF AAY+L + K +
Sbjct: 391 VGEWMVILGAVKANFWIGLAAATALIFGAAYTLWMFKRV 429
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ A F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHQLPLSARAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + + +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSMPIAPDAARHWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS + ++ H F +FLS G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GLVQMIAHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PKFAAFALLFAMANCGLPGTAGFVGE 393
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALVYLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHQLPLSARAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + +W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDAARHWAWLMIALSLIAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|350545172|ref|ZP_08914677.1| NADH-ubiquinone oxidoreductase chain M [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527063|emb|CCD39004.1| NADH-ubiquinone oxidoreductase chain M [Candidatus Burkholderia
kirkii UZHbot1]
Length = 499
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/404 (56%), Positives = 311/404 (76%), Gaps = 13/404 (3%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I S++GL+ V P +GF ++ WID FNI Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSVLGLI--VTIPLITGFDMSTAALQFVEQSNWIDRFNITYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+++++ + I +++A+YM+AFLILSG++IG F DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVVVVIAGWEVITERVAQYMAAFLILSGIMIGVFSTADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML++++YLY +F++ +W + + Q+ LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALLYLY-TQTHTFDLATWQAVKLDMTPQVLLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKMPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML---TKISIQGA 484
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG FM ++++++G
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTLGFFMFGESSQLAMEGG 332
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
IIQMISH +S AMF+SIG LY+++ R I+++GG++N +P F+ F ++F++ANC LPGT
Sbjct: 333 IIQMISHGFVSGAMFLSIGVLYDRVHLRQIADYGGVVNTMPKFATFAMLFAMANCGLPGT 392
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL+AVK+NF I L + LI AAY+L + K + F
Sbjct: 393 SGFVGEFMVILAAVKYNFWIAFLATFTLILGAAYTLWMYKRVYF 436
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 18/234 (7%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L +T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQAVKLDMTPQVLLFIAFFLAFAVKMPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPIAPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 316
Query: 143 G---LGVS---AYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G G S A I +++H F +FLS G ++ + H + I + GG+ MP
Sbjct: 317 GFFMFGESSQLAMEGGIIQMISHGFVSGAMFLSIG-VLYDRVHLRQIADYGGVVNTMPKF 375
Query: 197 CITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYFNIYYFLGIDGLSLW 243
+++ ++ G P SGF + K WI + + + +LW
Sbjct: 376 ATFAMLFAMANCGLPGTSGFVGEFMVILAAVKYNFWIAFLATFTLILGAAYTLW 429
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 28/286 (9%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ + S ML + LY T T
Sbjct: 137 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALLYLYTQTHTF 193
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII--- 713
+L + + +KL+ +L ++ L + K+ + P H W+PD + G S++
Sbjct: 194 DLAT-WQAVKLDMTPQVLLFIAFFL---AFAVKMPMWPVHTWLPDAHVEAPTGGSVVLAA 249
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
I L L L + I L P+VI L++ ++I + A+ Q + K++
Sbjct: 250 IMLKLGAYGFLRFSLPIAPDASHFLAPVVIT-------LSLIAVIYIGLVAMVQADMKKL 302
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
+AYSSIAHMG + S + + G+ +I++ F F I +L +
Sbjct: 303 VAYSSIAHMGFVTLGFFMFGESSQ-----LAMEGGIIQMISHGFVSGAMFLSIGVLYDRV 357
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ + G+ P A M+F + G P T GF +F +
Sbjct: 358 HLR--QIADYGGVVNTMPKFATFAMLFAMANCGLPGTSGFVGEFMV 401
>gi|222110098|ref|YP_002552362.1| proton-translocating NADH-quinone oxidoreductase subunit m
[Acidovorax ebreus TPSY]
gi|221729542|gb|ACM32362.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidovorax ebreus TPSY]
Length = 491
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/367 (57%), Positives = 295/367 (80%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K +WI+ FN+YY LG+DG++ WF+PLTAFIT+I+++ S + I +++ +YM AFLILSGL
Sbjct: 63 EKSMWIERFNVYYHLGVDGIAFWFVPLTAFITVIVVIASWESITERVNQYMGAFLILSGL 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F A+DGMLFY+FFEATLIP+++IIG WGG N+ YAA KFFLYTL+GSLL LI+ IY
Sbjct: 123 MVGVFSAMDGMLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLTLIAFIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY S SF+I +WH+L ++ Q LF FF AFA+K+P+WP+HTWLPD HVEAPT GS
Sbjct: 183 LYNQSGGSFDIATWHKLPLSATAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+LAAIMLKLG YG LRFSLPI PDAS ++ L+ITLSL+++IY+ L+AMVQ D+KKL+A
Sbjct: 243 AVLAAIMLKLGAYGFLRFSLPIAPDASREWAWLMITLSLVAVIYVGLVAMVQKDMKKLVA 302
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG F+ + + G ++QMI+H +S AMF+ IG LY+++ +R I+++GG
Sbjct: 303 YSSVAHMGFVTLGFFVFNDMGVSGGLVQMIAHGFVSGAMFLCIGVLYDRVHSREIASYGG 362
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ F ++F++ANC LP T+GF+GE+M+I++AVKF+F +G+ + ALI A+YS
Sbjct: 363 VVNTMPKFAAFALLFTMANCGLPATAGFVGEWMVIIAAVKFDFWVGLGAALALILGASYS 422
Query: 580 LCLSKNI 586
L + K +
Sbjct: 423 LWMYKRV 429
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHKLPLSATAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S +++ + + ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSLPIAPDASREWAWLMITLSLVAVIYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G +GVS + ++ H F +FL G ++ + H+++I + GG+ M
Sbjct: 312 VTLGFFVFNDMGVSG---GLVQMIAHGFVSGAMFLCIG-VLYDRVHSREIASYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PKFAAFALLFTMANCGLPATAGFVGE 393
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S L LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLTLIAFIYLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHKLPLSATAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSLPIAPDASREWAWLMITLSLVAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + +FN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFVFNDMGVSGGLVQMIAHGFVSGAMFLCIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIASYGGVVNTMPKFAAFALLFTMANCGLPATAGFVGEWMV 396
>gi|121593389|ref|YP_985285.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax sp. JS42]
gi|120605469|gb|ABM41209.1| NADH dehydrogenase subunit M [Acidovorax sp. JS42]
Length = 491
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/396 (54%), Positives = 307/396 (77%), Gaps = 9/396 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
+LIG L+ V P GF + +K +WI+ FN++Y LG+DG++ WF+PLTAFI
Sbjct: 34 ALIGALAGFAVTLPLIGGFDNGSAAAQFVEKSMWIERFNVHYHLGVDGIAFWFVPLTAFI 93
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I+++ S + I +++ +YM+AFLILSGL++G FCA+DGMLFY+FFEATLIP+++IIG W
Sbjct: 94 TVIVVIASWEAITERVNQYMAAFLILSGLMVGVFCAMDGMLFYVFFEATLIPMYLIIGIW 153
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG N+ YAA KFFLYTL+GSLL L++ IYLY S SF+I +WH+L ++ Q LF F
Sbjct: 154 GGPNKIYAAFKFFLYTLLGSLLTLVAFIYLYNQSGGSFDIATWHKLPLSGTAQTLLFFAF 213
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
F AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFSLPI PDA++ ++
Sbjct: 214 FAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEWA 273
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
L+I LSL+++IY+ L+AMVQ D+KKL+AYSS+AHMG VTLG F+ I + G ++QMI+
Sbjct: 274 WLMIALSLVAVIYVGLVAMVQKDMKKLVAYSSVAHMGLVTLGFFVFNDIGVSGGLVQMIA 333
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S+AMF+ IG LY+++ +R I+ +GG++N +P F+ F ++FS+ANC LP T+GF+GE
Sbjct: 334 HGFVSAAMFLCIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFSMANCGLPATAGFVGE 393
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
+M+I+ AVKF+F +G+ +T+LI A+Y+L + K +
Sbjct: 394 WMVIIGAVKFDFWVGLGAATSLILGASYTLWMYKRV 429
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHKLPLSGTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + ++ +++ + + ++GL+ ++Q D+K+++AYS+++ +G
Sbjct: 252 LGAYGFLRFSLPIAPDAAHEWAWLMIALSLVAVIYVGLVAMVQKDMKKLVAYSSVAHMGL 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G +GVS + ++ H F A +FL G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFVFNDIGVSG---GLVQMIAHGFVSAAMFLCIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PKFAAFALLFSMANCGLPATAGFVGE 393
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S L LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLTLVAFIYLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHKLPLSGTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSLPIAPDAAHEWAWLMIALSLVAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMGL+ +FN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGLVTL----------GFFVFNDIGVSGGLVQMIAHGFVSAAMFLCIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPKFAAFALLFSMANCGLPATAGFVGEWMV 396
>gi|388569723|ref|ZP_10156110.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Hydrogenophaga sp. PBC]
gi|388263013|gb|EIK88616.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Hydrogenophaga sp. PBC]
Length = 491
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/423 (52%), Positives = 316/423 (74%), Gaps = 15/423 (3%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD------KKKI 224
G +++ + ++ G+ ++ I I +L+GL V P ++GF +K +
Sbjct: 15 GVVLLALGRDEQ----AGMVRW--IALIGALVGLA--VTVPLYTGFEVGSSAMQFVEKSL 66
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ FN++Y LG+DG+SLW + LTAFIT+I+++ + I +++ +YM AFLILSG +IG
Sbjct: 67 WIERFNVHYHLGVDGISLWLVLLTAFITVIVVIAGWEVITERVNQYMGAFLILSGFMIGV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEATLIP+++IIG WGG N+ YAA KFFLYTL+GSLLML+++IYLY
Sbjct: 127 FAAQDAMLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLVALIYLYVK 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF W+ L + Q LF FF AFA+K+P+WP+HTWLPD HVEAPT GS +LA
Sbjct: 187 SGGSFAFTDWYALPLGGTVQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG LRFSLPI PDAS+ ++ L+I LSLI++IY+ L+AMVQ D+KKL+AYSS+
Sbjct: 247 AIMLKLGAYGFLRFSLPILPDASHEWAWLMIALSLIAVIYVGLVAMVQQDMKKLVAYSSV 306
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ + + I G ++QM+SH +S+AMF++IG LY+++ +R I+++GG+IN
Sbjct: 307 AHMGFVTLGFFIFSDLGISGGLVQMVSHGFVSAAMFLAIGVLYDRVHSREIADYGGVINT 366
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++F++AN LPGT+GF+GE+M+I++AVK NF IG+L +TALIF AAYSL +
Sbjct: 367 MPRFAAFALLFTMANAGLPGTAGFVGEWMVIIAAVKANFWIGLLAATALIFGAAYSLWMF 426
Query: 584 KNI 586
K +
Sbjct: 427 KRV 429
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
WY PL T F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WYALPLGGTVQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSLPILPDASHEWAWLMIALSLIAVIYVGLVAMVQQDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+S + +++H F A +FL+ G ++ + H+++I + GG+ MP
Sbjct: 315 GFFIFSDLGISG---GLVQMVSHGFVSAAMFLAIG-VLYDRVHSREIADYGGVINTMPRF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFTMANAGLPGTAGFVGE 393
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 128/286 (44%), Gaps = 30/286 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLVALIYLYVKSGGS 190
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIIT 715
+ + + L +V L + K+ + P H W+PDV+ G++++
Sbjct: 191 FAFTDWYALPLGG---TVQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAA 247
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
++L KL + + R + L W +++ L++ ++I + A+ Q + K+++A
Sbjct: 248 IML----KLGAYGFL-RFSLPILPDASHEWAWLMIALSLIAVIYVGLVAMVQQDMKKLVA 302
Query: 776 YSSIAHMGLMLFSIISIKTSHNNLIIFNSC--DSGLFYIITYIFAILGAFGVIILLKNNT 833
YSS+AHMG + IF+ GL ++++ F F I +L +
Sbjct: 303 YSSVAHMGFVTL----------GFFIFSDLGISGGLVQMVSHGFVSAAMFLAIGVLYDRV 352
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + AG P T GF ++ +
Sbjct: 353 HSR--EIADYGGVINTMPRFAAFALLFTMANAGLPGTAGFVGEWMV 396
>gi|171463538|ref|YP_001797651.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171193076|gb|ACB44037.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 488
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/369 (58%), Positives = 298/369 (80%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI ++I Y+LGIDG+S+WFI LTAFI +I+++ + + I+ K+++YM++F+ILSGL
Sbjct: 62 EKISWIPRYDINYYLGIDGISVWFIVLTAFINIIVVIAAWEVIETKVSQYMASFMILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL LI+M+Y
Sbjct: 122 MIGVFCALDALLFYVFFEATLIPMYIIIGVWGGHNRIYAAFKFFLYTLLGSLLTLIAMLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++N +F+IL W + +EQI LF FF+AFA+K+P+WP+HTWLPD HVEAPT GS
Sbjct: 182 LYNVTN-TFDILVWQNTRLDIVEQILLFAAFFMAFAVKVPMWPLHTWLPDVHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS Y +I LSL++++Y+ +A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVIFLSLVAVMYVGAVALVQKDMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG F+ + + I+G I+QMISH ++ AMF+SIG LY++M TR I+++GG
Sbjct: 301 YSSVAHMGFVTLGFFLFSPLGIEGGIVQMISHGFVAGAMFLSIGVLYDRMHTRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+++ +P F+ F ++ ++ANC LP TSGF+GEFM+IL+AV ++F IG+L +TALI AAYS
Sbjct: 361 VVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMVILAAVDYDFVIGILAATALILGAAYS 420
Query: 580 LCLSKNIIF 588
L + K + F
Sbjct: 421 LWMVKRVFF 429
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W + L I + F + K +PLHTWLPD +E PT S ++ AA M+ G
Sbjct: 194 WQNTRLDIVEQILLFAAFFMAFAVKVPMWPLHTWLPDVHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L ++F+ + ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASQYLGPFVIFLSLVAVMYVGAVALVQKDMKKLVAYSSVAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+ I +++H F +FLS G ++ + H + I + GG+ MP
Sbjct: 313 GFFLFSPLGIEG---GIVQMISHGFVAGAMFLSIG-VLYDRMHTRQIADYGGVVHRMPAF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 369 TAFAVLMAMANCGLPATSGFVGE 391
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 128/294 (43%), Gaps = 47/294 (15%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N I+ AA K+F+ +L S L + LY +T T
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGHNRIY---AAFKFFLYTLLGSLLTLIAMLYLYNVTNT- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLS--FKLGISPFHMWVPDVYQGASIIITLLL 718
F+++ N ++ LL ++ K+ + P H W+PDV+ A
Sbjct: 189 -----FDILVWQNTRLDIVEQILLFAAFFMAFAVKVPMWPLHTWLPDVHVEAP------- 236
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + + L + L++ +++ A+ Q +
Sbjct: 237 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVIFLSLVAVMYVGAVALVQKDM 295
Query: 771 KRMIAYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
K+++AYSS+AHMG + LFS + I + G+ +I++ F F
Sbjct: 296 KKLVAYSSVAHMGFVTLGFFLFSPLGI-------------EGGIVQMISHGFVAGAMFLS 342
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
I +L + T ++ + G+ R P ++ + G P T GF +F +
Sbjct: 343 IGVLYDRM--HTRQIADYGGVVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMV 394
>gi|145589222|ref|YP_001155819.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047628|gb|ABP34255.1| NADH dehydrogenase subunit M [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 488
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/369 (58%), Positives = 297/369 (80%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI ++I Y LGIDG+S+WFI LTAFI + +++ + + I+ K+++YM++F+ILSGL
Sbjct: 62 EKMSWIPRYDINYHLGIDGISVWFIVLTAFINIFVVIAAWEVIETKVSQYMASFMILSGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++M+Y
Sbjct: 122 MIGVFCALDALLFYVFFEATLIPMYIIIGVWGGHNRIYAAFKFFLYTLLGSLLTLVAMLY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++N +F+IL+W + +EQI LF FF+AFA+K+P+WP+HTWLPD HVEAPT GS
Sbjct: 182 LYNVTN-TFDILTWQNARLDIVEQILLFFAFFMAFAVKVPMWPLHTWLPDVHVEAPTGGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLKLG YG LRFSLPI PDAS Y +I LSL+++IY+ +A+VQ D+KKL+A
Sbjct: 241 VVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVIFLSLVAVIYVGAVALVQKDMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG F+ + + I+G I+QMISH ++ AMF+SIG LY++M TR I+++GG
Sbjct: 301 YSSVAHMGFVTLGFFLFSPLGIEGGIVQMISHGFVAGAMFLSIGVLYDRMHTRQIADYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+++ +P F+ F ++ ++ANC LP TSGF+GEFM+IL+AV ++F IG+L +TALI AAYS
Sbjct: 361 VVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMVILAAVDYDFVIGILAATALILGAAYS 420
Query: 580 LCLSKNIIF 588
L + K + F
Sbjct: 421 LWMVKRVFF 429
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W + L I + F + K +PLHTWLPD +E PT S ++ AA M+ G
Sbjct: 194 WQNARLDIVEQILLFFAFFMAFAVKVPMWPLHTWLPDVHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L ++F+ + ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASQYLGPFVIFLSLVAVIYVGAVALVQKDMKKLVAYSSVAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+ I +++H F +FLS G ++ + H + I + GG+ MP
Sbjct: 313 GFFLFSPLGIEG---GIVQMISHGFVAGAMFLSIG-VLYDRMHTRQIADYGGVVHRMPAF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 369 TAFAVLMAMANCGLPATSGFVGE 391
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 47/294 (15%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N I+ AA K+F+ +L S L + LY +T T
Sbjct: 133 LFYVFFEATLIPMYIIIGVWGGHNRIY---AAFKFFLYTLLGSLLTLVAMLYLYNVTNT- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
F+++ N ++ LL ++F K+ + P H W+PDV+ A
Sbjct: 189 -----FDILTWQNARLDIVEQILLFFAFFMAFAVKVPMWPLHTWLPDVHVEAP------- 236
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + + L + L++ ++I A+ Q +
Sbjct: 237 -TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVIFLSLVAVIYVGAVALVQKDM 295
Query: 771 KRMIAYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
K+++AYSS+AHMG + LFS + I + G+ +I++ F F
Sbjct: 296 KKLVAYSSVAHMGFVTLGFFLFSPLGI-------------EGGIVQMISHGFVAGAMFLS 342
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
I +L + T ++ + G+ R P ++ + G P T GF +F +
Sbjct: 343 IGVLYDRM--HTRQIADYGGVVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMV 394
>gi|121609750|ref|YP_997557.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Verminephrobacter eiseniae EF01-2]
gi|121554390|gb|ABM58539.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Verminephrobacter eiseniae EF01-2]
Length = 491
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/383 (56%), Positives = 298/383 (77%), Gaps = 7/383 (1%)
Query: 211 PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P + GF +K WI+ FN++Y LG+DG+S WF+PLTAF T+I+++ S I
Sbjct: 47 PLYQGFQPGTAAMQFVEKTAWIERFNVHYHLGVDGISFWFVPLTAFTTVIVVIASWQAIT 106
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
+++ +YM AFLILSGL+IG F ALDG+LFY+FFEATLIP+++IIG WGG N+ YAA KFF
Sbjct: 107 ERVNQYMGAFLILSGLMIGVFSALDGILFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFF 166
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTL+GSLLMLI++IYLY S S +I +W QL + Q LF FF AFA+K+P+WP+
Sbjct: 167 LYTLLGSLLMLIALIYLYNQSGGSVDIATWQQLPLGSTAQSLLFFAFFAAFAVKVPMWPV 226
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPD HVEAPT GS +LAAIMLKLG YG LRFSLPI PDA+ ++ L+I LSLI++IY
Sbjct: 227 HTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPITPDAAREWAWLMIALSLIAVIY 286
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
+ L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++ + G ++QMI+H +S+AMF+SIG
Sbjct: 287 VGLVALVQKDMKKLVAYSSVAHMGFVTLGFFIFNELGVAGGLVQMIAHGFVSAAMFLSIG 346
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY+++ +R I+ +GG++N +P+F+ F ++F++ANC LPGT+GF+GE+M+IL+AVK NF
Sbjct: 347 VLYDRVHSRDIAAYGGVVNRMPNFTAFALLFAMANCGLPGTAGFVGEWMVILAAVKTNFW 406
Query: 564 IGVLTSTALIFSAAYSLCLSKNI 586
IG+ +TAL+ AAY+L + K +
Sbjct: 407 IGLAAATALVLGAAYTLWMFKRV 429
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W PL TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWQQLPLGSTAQSLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + + +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSLPITPDAAREWAWLMIALSLIAVIYVGLVALVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGV+ + ++ H F A +FLS G ++ + H++DI GG+ M
Sbjct: 312 VTLGFFIFNELGVAG---GLVQMIAHGFVSAAMFLSIG-VLYDRVHSRDIAAYGGVVNRM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PNFTAFALLFAMANCGLPGTAGFVGE 393
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 136/311 (43%), Gaps = 31/311 (9%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIYLYNQSGGS 190
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIIT 715
+ + + L + S+L + + K+ + P H W+PDV+ G++++
Sbjct: 191 VDIATWQQLPLGSTAQSLLFFAFFAAF---AVKVPMWPVHTWLPDVHVEAPTGGSAVLAA 247
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
++L KL + + R + W +++ L++ ++I + A+ Q + K+++A
Sbjct: 248 IML----KLGAYGFL-RFSLPITPDAAREWAWLMIALSLIAVIYVGLVALVQKDMKKLVA 302
Query: 776 YSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNT 833
YSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 303 YSSVAHMGFVTL----------GFFIFNELGVAGGLVQMIAHGFVSAAMFLSIGVLYDRV 352
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
++ ++ + G+ R P ++F + G P T GF ++ + +T W+ L
Sbjct: 353 HSR--DIAAYGGVVNRMPNFTAFALLFAMANCGLPGTAGFVGEWMVILAAVKT-NFWIGL 409
Query: 894 LIIMCSLIGAK 904
++GA
Sbjct: 410 AAATALVLGAA 420
>gi|326316111|ref|YP_004233783.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323372947|gb|ADX45216.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 491
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/399 (56%), Positives = 311/399 (77%), Gaps = 9/399 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I SLIGL V P + F + +K +WI+ FN++Y LG+DG+S WF+PLT
Sbjct: 33 IALIGSLIGLA--VTLPLYGNFDNGTAAAQFVEKILWIERFNVHYHLGLDGISFWFVPLT 90
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AFIT+I+++ S + I +++ +YM AFLILSGL+IG F A+DG+LFY+FFEATLIP+++II
Sbjct: 91 AFITVIVVIASWESITERVNQYMGAFLILSGLMIGVFSAMDGLLFYVFFEATLIPMYLII 150
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG N+ YAA KFFLYTL+GSLLMLI+++YLY S SF+I +WHQL ++ Q LF
Sbjct: 151 GIWGGPNKIYAAFKFFLYTLLGSLLMLIALVYLYNQSGGSFDIATWHQLPLSARAQTLLF 210
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
FF AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDA+
Sbjct: 211 FAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDAAR 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+++ L+I LSL+++IY+ L+AMVQ D+KKL+AYSS+AHMGFVTLG F+ + + G ++Q
Sbjct: 271 HWAWLMIALSLVAVIYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MI+H +S AMF+SIG LY+++ +R I+ +GG++N +P F+ F ++F++ANC LPGT+GF
Sbjct: 331 MIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLPGTAGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
+GE+M+IL AVK NF IG+L +TALIF AAY+L + K +
Sbjct: 391 VGEWMVILGAVKANFWIGLLAATALIFGAAYTLWMFKRV 429
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL+ A F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHQLPLSARAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + + +++ + + ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSMPIAPDAARHWAWLMIALSLVAVIYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS + ++ H F +FLS G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GLVQMIAHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PKFAAFALLFAMANCGLPGTAGFVGE 393
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALVYLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + S A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIATWHQLPLSARAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + +W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDAARHWAWLMIALSLVAVIYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|348589828|ref|YP_004874290.1| NADH-ubiquinone oxidoreductase subunit M [Taylorella asinigenitalis
MCE3]
gi|347973732|gb|AEP36267.1| NADH-ubiquinone oxidoreductase chain M [Taylorella asinigenitalis
MCE3]
Length = 493
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/399 (58%), Positives = 304/399 (76%), Gaps = 16/399 (4%)
Query: 205 LSLVGA--------PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
L+L+GA P +GF + + WI FN Y LG+DG+S+WF+ LTA
Sbjct: 37 LALIGAIVSFVVTIPLIAGFDASTAEFQFVEHVEWISAFNASYHLGVDGISVWFVLLTAV 96
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
T+++I+ + IK ++++YM+AFLILSGL+IG F ALDG+LFY+FFEATLIP++IIIG
Sbjct: 97 TTILVIVAGWEVIKSRISQYMAAFLILSGLMIGVFVALDGLLFYVFFEATLIPMYIIIGV 156
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG NR YAA KFFLYTL+GSLL LI+ IYLY S +F I WH L + Q+++F
Sbjct: 157 WGGPNRVYAAFKFFLYTLLGSLLTLIAFIYLYSQSG-TFEISQWHNLQLDITPQLFIFFA 215
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
F AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 216 LFAAFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAIMLKLGAYGFLRFSLPITPDASHDM 275
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
+ L+ITLSL +IIYISL+A+VQ D+KKLIAYSS+AHMGFVTLG F+ T I ++GAIIQMI
Sbjct: 276 AWLMITLSLAAIIYISLVAIVQEDMKKLIAYSSVAHMGFVTLGTFLFTAIGLEGAIIQMI 335
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
SH +S+AMF+ IG +Y+++ TR I ++GG+INV+P F FF++FS+AN LPGTSGFIG
Sbjct: 336 SHGFVSAAMFMCIGVMYDRLHTRQIKDYGGVINVMPKFVTFFVLFSMANSGLPGTSGFIG 395
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
EF +IL+AV+ NF IG+L +T+LI AAYSL + K + +
Sbjct: 396 EFYVILAAVQHNFWIGLLAATSLILGAAYSLWMVKRVAY 434
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W++ L IT L F K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 199 WHNLQLDITPQLFIFFALFAAFAVKVPMWPVHTWLPDAHVEAPTGGS-MVLAAIMLKLGA 257
Query: 85 FMITRMS----PLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYM 140
+ R S P L I L + AI ++ L+ I+Q D+K++IAYS+++ +G++
Sbjct: 258 YGFLRFSLPITPDASHDMAWLMITLSLAAI--IYISLVAIVQEDMKKLIAYSSVAHMGFV 315
Query: 141 TVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
T+G +G+ +I +++H F A +F+ G ++ + H + I++ GG+ MP
Sbjct: 316 TLGTFLFTAIGLEG---AIIQMISHGFVSAAMFMCIG-VMYDRLHTRQIKDYGGVINVMP 371
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 45/289 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S L LY +GT E+ N+ ++ + +
Sbjct: 165 AAFKFFLYTLLGSLLTLIAFIYLYSQSGTFEISQWHNL----QLDITPQLFIFFALFAAF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 221 AVKVPMWPVHTWLPDAHVEAP--------TGGSMVLAAIMLKLGAYGFLRFSLPITPDAS 272
Query: 745 ----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTS 795
W I L LA ++I ++ AI Q + K++IAYSS+AHMG + LF+ I ++ +
Sbjct: 273 HDMAWLMITLSLA--AIIYISLVAIVQEDMKKLIAYSSVAHMGFVTLGTFLFTAIGLEGA 330
Query: 796 HNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
+I + +F I ++ L T ++ + G+ P
Sbjct: 331 IIQMISHGFVSAAMFMCIGVMYDRL---------------HTRQIKDYGGVINVMPKFVT 375
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
++F + +G P T GF +F++ + W+ LL ++GA
Sbjct: 376 FFVLFSMANSGLPGTSGFIGEFYVILAAVQ-HNFWIGLLAATSLILGAA 423
>gi|399116515|emb|CCG19321.1| NADH-ubiquinone oxidoreductase, chain M [Taylorella asinigenitalis
14/45]
Length = 493
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/399 (58%), Positives = 304/399 (76%), Gaps = 16/399 (4%)
Query: 205 LSLVGA--------PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
L+L+GA P +GF + + WI FN Y LG+DG+S+WF+ LTA
Sbjct: 37 LALIGAIVSFVVTIPLIAGFDASTAEFQFVEHVEWISAFNASYHLGVDGISVWFVLLTAV 96
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
T+++I+ + IK ++++YM+AFLILSGL+IG F ALDG+LFY+FFEATLIP++IIIG
Sbjct: 97 TTILVIVAGWEVIKSRISQYMAAFLILSGLMIGVFVALDGLLFYVFFEATLIPMYIIIGV 156
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG NR YAA KFFLYTL+GSLL LI+ IYLY S +F I WH L + Q+++F
Sbjct: 157 WGGPNRVYAAFKFFLYTLLGSLLTLIAFIYLYSQSG-TFEISQWHNLQLDITPQLFIFFA 215
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
F AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 216 LFAAFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAIMLKLGAYGFLRFSLPITPDASHDM 275
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
+ L+ITLSL +IIYISL+A+VQ D+KKLIAYSS+AHMGFVTLG F+ T I ++GAIIQMI
Sbjct: 276 AWLMITLSLAAIIYISLVAIVQEDMKKLIAYSSVAHMGFVTLGTFLFTAIGLEGAIIQMI 335
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
SH +S+AMF+ IG +Y+++ TR I ++GG+INV+P F FF++FS+AN LPGTSGFIG
Sbjct: 336 SHGFVSAAMFMCIGVMYDRLHTRQIKDYGGVINVMPKFVTFFVLFSMANSGLPGTSGFIG 395
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
EF +IL+AV+ NF IG+L +T+LI AAYSL + K + +
Sbjct: 396 EFYVILAAVQHNFWIGLLAATSLILGAAYSLWMVKRVAY 434
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W++ L IT L F K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 199 WHNLQLDITPQLFIFFALFAAFAVKVPMWPVHTWLPDAHVEAPTGGS-MVLAAIMLKLGA 257
Query: 85 FMITRMS----PLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYM 140
+ R S P L I L + AI ++ L+ I+Q D+K++IAYS+++ +G++
Sbjct: 258 YGFLRFSLPITPDASHDMAWLMITLSLAAI--IYISLVAIVQEDMKKLIAYSSVAHMGFV 315
Query: 141 TVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
T+G +G+ +I +++H F A +F+ G ++ + H + I++ GG+ MP
Sbjct: 316 TLGTFLFTAIGLEG---AIIQMISHGFVSAAMFMCIG-VMYDRLHTRQIKDYGGVINVMP 371
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 45/289 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S L LY +GT E+ N+ ++ + +
Sbjct: 165 AAFKFFLYTLLGSLLTLIAFIYLYSQSGTFEISQWHNL----QLDITPQLFIFFALFAAF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 221 AVKVPMWPVHTWLPDAHVEAP--------TGGSMVLAAIMLKLGAYGFLRFSLPITPDAS 272
Query: 745 ----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTS 795
W I L LA ++I ++ AI Q + K++IAYSS+AHMG + LF+ I ++ +
Sbjct: 273 HDMAWLMITLSLA--AIIYISLVAIVQEDMKKLIAYSSVAHMGFVTLGTFLFTAIGLEGA 330
Query: 796 HNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
+I + +F I ++ L T ++ + G+ P
Sbjct: 331 IIQMISHGFVSAAMFMCIGVMYDRL---------------HTRQIKDYGGVINVMPKFVT 375
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
++F + +G P T GF +F++ + W+ LL ++GA
Sbjct: 376 FFVLFSMANSGLPGTSGFIGEFYVILAAVQ-HNFWIGLLAATSLILGAA 423
>gi|377821133|ref|YP_004977504.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. YI23]
gi|357935968|gb|AET89527.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. YI23]
Length = 499
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/404 (55%), Positives = 310/404 (76%), Gaps = 13/404 (3%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKK------KIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I S++GL+ V P +GF + WI+ FNI Y LG+DG+S+WF+ LT
Sbjct: 36 IALIGSVLGLI--VTIPLITGFDTSTAALQFVELSPWIERFNITYHLGVDGISMWFVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
A IT+++++ + I +++++YM+AFLILSG++IG F DG+LFY+FFEATLIP++III
Sbjct: 94 ALITVVVVIAGWEVITERVSQYMAAFLILSGIMIGVFSTADGLLFYVFFEATLIPMYIII 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL GSLLML++++YLY +F++ +W + Q+ LF
Sbjct: 154 GVWGGPNRVYAAFKFFLYTLAGSLLMLVALLYLY-TQTHTFDLATWQAAKLDMTPQVLLF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
I FF+AFA+K+P++P+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFSLPI PDAS+
Sbjct: 213 IAFFLAFAVKVPMFPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASH 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML---TKISIQGA 484
+ + ++ITLSLI++IYI L+AMVQ D+KKL+AYSSIAHMGFVTLG FM +++ ++GA
Sbjct: 273 FLAPVVITLSLIAVIYIGLVAMVQTDMKKLVAYSSIAHMGFVTLGFFMFGPSSQLGMEGA 332
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
IIQMISH +S AMF+SIG LY+++ +R I+++GG++N +P F+ F ++F++ANC LPGT
Sbjct: 333 IIQMISHGFVSGAMFLSIGVLYDRVHSRQIADYGGVVNTMPKFAAFVMLFAMANCGLPGT 392
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL+AVK+NF I L + LI AAY+L + K + F
Sbjct: 393 SGFVGEFMVILAAVKYNFWIAFLATFTLILGAAYTLWMYKRVYF 436
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 24/237 (10%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L +T + F+ + K FP+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQAAKLDMTPQVLLFIAFFLAFAVKVPMFPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPIAPDASHFLAPVVITLSLIAVIYIGLVAMVQTDMKKLVAYSSIAHMGFVTL 316
Query: 143 G---------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
G LG+ +I +++H F +FLS G ++ + H++ I + GG+ M
Sbjct: 317 GFFMFGPSSQLGMEG---AIIQMISHGFVSGAMFLSIG-VLYDRVHSRQIADYGGVVNTM 372
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYFNIYYFLGIDGLSLW 243
P ++ ++ G P SGF + K WI + + + +LW
Sbjct: 373 PKFAAFVMLFAMANCGLPGTSGFVGEFMVILAAVKYNFWIAFLATFTLILGAAYTLW 429
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 125/286 (43%), Gaps = 28/286 (9%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ + S ML + LY T T
Sbjct: 137 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALLYLYTQTHTF 193
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASII--- 713
+L + + KL+ +L ++ L + K+ + P H W+PD + G S++
Sbjct: 194 DLAT-WQAAKLDMTPQVLLFIAFFL---AFAVKVPMFPVHTWLPDAHVEAPTGGSVVLAA 249
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
I L L L + I L P+VI L++ ++I + A+ Q + K++
Sbjct: 250 IMLKLGAYGFLRFSLPIAPDASHFLAPVVIT-------LSLIAVIYIGLVAMVQTDMKKL 302
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
+AYSSIAHMG + S + + +I++ F F I +L +
Sbjct: 303 VAYSSIAHMGFVTLGFFMFGPSSQ-----LGMEGAIIQMISHGFVSGAMFLSIGVLYDRV 357
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ ++ + G+ P A +M+F + G P T GF +F +
Sbjct: 358 HSR--QIADYGGVVNTMPKFAAFVMLFAMANCGLPGTSGFVGEFMV 401
>gi|89900298|ref|YP_522769.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Rhodoferax ferrireducens T118]
gi|89345035|gb|ABD69238.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodoferax ferrireducens T118]
Length = 491
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/387 (54%), Positives = 299/387 (77%), Gaps = 7/387 (1%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P ++GF +K WI+ FN+ Y +G+DG+SLW + LTAFI +++++
Sbjct: 43 LVTLPLYAGFKLGTAAMQFVEKAPWIERFNVNYHMGVDGISLWLVILTAFINVVVVIAGW 102
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I +++ +YM AFLILSGL IG FCALDGMLFY+FFEATL+P+++IIG WGG N+ YAA
Sbjct: 103 EVITRRVNQYMGAFLILSGLQIGVFCALDGMLFYVFFEATLVPMYLIIGIWGGPNKIYAA 162
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTL+GSLLML+++I+LY S SF++ +WHQL + Q LF F AFA+K+P
Sbjct: 163 FKFFLYTLLGSLLMLVALIFLYTKSGGSFDLATWHQLPLAGTAQTLLFFAFLAAFAVKVP 222
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPD HVEAPT GS +LAA+MLKLG YG LRFSLPI PDA++ +S L+I LSLI
Sbjct: 223 MWPVHTWLPDVHVEAPTGGSAVLAAVMLKLGAYGFLRFSLPIAPDAAHEWSGLMIALSLI 282
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+++Y+ L+A+VQ D+KKL+AY+S+AHMGFVTLG F+ + + GA++QM+SH +S+AMF
Sbjct: 283 AVVYVGLVALVQTDMKKLVAYASVAHMGFVTLGFFIFNDLGLSGALVQMVSHGFVSAAMF 342
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+SIG LY++ +R I+++GG++N +P F+ F ++F++ANC LPGT+GF+GE+M+I+ AVK
Sbjct: 343 LSIGVLYDRAHSREIASYGGVVNTMPKFTAFALLFAMANCGLPGTAGFVGEWMVIIGAVK 402
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNI 586
NF +G +++L+F AAY+L + K +
Sbjct: 403 ANFWLGFAAASSLVFGAAYTLWMVKRV 429
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 113/203 (55%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PLA TA F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHQLPLAGTAQTLLFFAFLAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAVMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + ++ +++ + I ++GL+ ++Q D+K+++AY++++ +G++T+
Sbjct: 255 YGFLRFSLPIAPDAAHEWSGLMIALSLIAVVYVGLVALVQTDMKKLVAYASVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+S ++ +++H F A +FLS G ++ + H+++I + GG+ MP
Sbjct: 315 GFFIFNDLGLSG---ALVQMVSHGFVSAAMFLSIG-VLYDRAHSREIASYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 TAFALLFAMANCGLPGTAGFVGE 393
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 124/287 (43%), Gaps = 32/287 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITG-T 659
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G +
Sbjct: 134 LFYVFFEATLVPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLVALIFLYTKSGGS 190
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+L + + + L V K+ + P H W+PDV+ G++++
Sbjct: 191 FDLATWHQLPLAGTAQTLLFFAFLAAFAV----KVPMWPVHTWLPDVHVEAPTGGSAVLA 246
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
++L KL + + R + W +++ L++ +++ + A+ Q + K+++
Sbjct: 247 AVML----KLGAYGFL-RFSLPIAPDAAHEWSGLMIALSLIAVVYVGLVALVQTDMKKLV 301
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNN 832
AY+S+AHMG + IFN L ++++ F F I +L +
Sbjct: 302 AYASVAHMGFVTL----------GFFIFNDLGLSGALVQMVSHGFVSAAMFLSIGVLYDR 351
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P ++F + G P T GF ++ +
Sbjct: 352 AHSR--EIASYGGVVNTMPKFTAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|319761774|ref|YP_004125711.1| proton-translocating NADH-quinone oxidoreductase subunit m
[Alicycliphilus denitrificans BC]
gi|330826554|ref|YP_004389857.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Alicycliphilus denitrificans K601]
gi|317116335|gb|ADU98823.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Alicycliphilus denitrificans BC]
gi|329311926|gb|AEB86341.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Alicycliphilus denitrificans K601]
Length = 491
Score = 451 bits (1160), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/367 (57%), Positives = 293/367 (79%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ FN+YY LG+DG+S+WF+PLTAFIT+I+++ S + I +++ +YM+AFLILSGL
Sbjct: 63 EKAPWVARFNMYYHLGVDGISMWFVPLTAFITVIVVIASWESITERVYQYMAAFLILSGL 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDGMLFY+FFEATLIP+++IIG WGG N+ YAA KFFLYTL+GSLL L++ IY
Sbjct: 123 MIGVFSALDGMLFYVFFEATLIPMYLIIGMWGGPNKIYAAFKFFLYTLLGSLLTLVAFIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY S SF+I +WH+L + Q LF F AFA+K+P+WP+HTWLPD HVEAPT GS
Sbjct: 183 LYNQSGGSFDIAAWHRLPLGSTAQTLLFFALFAAFAVKVPMWPVHTWLPDVHVEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+LAAIMLKLG YG LRFSLPI PDA++ ++ L+ITLSLI++IY+ L+A+VQ D+KKL+A
Sbjct: 243 AVLAAIMLKLGAYGFLRFSLPIAPDAAHEWAWLMITLSLIAVIYVGLVAIVQKDMKKLVA 302
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG F+ + + G + QMI+H +S AMF+ IG LY+++ +R I+++GG
Sbjct: 303 YSSVAHMGFVTLGFFIFNDLGVSGGLAQMIAHGFVSGAMFLCIGVLYDRVHSRQIADYGG 362
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ F ++FS+ANC LP T+GFIGE+M+I+++V+FNF IG+ + ALI A+YS
Sbjct: 363 VVNTMPKFAAFALLFSMANCGLPATAGFIGEWMVIIASVRFNFWIGLGAALALILGASYS 422
Query: 580 LCLSKNI 586
L + K +
Sbjct: 423 LWMYKRV 429
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IAAWHRLPLGSTAQTLLFFALFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + ++ +++ + I ++GL+ I+Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSLPIAPDAAHEWAWLMITLSLIAVIYVGLVAIVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS + ++ H F +FL G ++ + H++ I + GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GLAQMIAHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGF 216
P +L+ ++ G P +GF
Sbjct: 368 PKFAAFALLFSMANCGLPATAGF 390
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 693 KLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
K+ + P H W+PDV+ G++++ ++L KL + + R + W
Sbjct: 220 KVPMWPVHTWLPDVHVEAPTGGSAVLAAIML----KLGAYGFL-RFSLPIAPDAAHEWAW 274
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--C 805
+++ L++ ++I + AI Q + K+++AYSS+AHMG + IFN
Sbjct: 275 LMITLSLIAVIYVGLVAIVQKDMKKLVAYSSVAHMGFVTL----------GFFIFNDLGV 324
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
GL +I + F F I +L + ++ ++ + G+ P A ++F +
Sbjct: 325 SGGLAQMIAHGFVSGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFAAFALLFSMANC 382
Query: 866 GFPPTIGFYAKFFI 879
G P T GF ++ +
Sbjct: 383 GLPATAGFIGEWMV 396
>gi|71906600|ref|YP_284187.1| NADH dehydrogenase subunit M [Dechloromonas aromatica RCB]
gi|71846221|gb|AAZ45717.1| NADH dehydrogenase subunit M [Dechloromonas aromatica RCB]
Length = 494
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 307/404 (75%), Gaps = 9/404 (2%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + SL+G ++ L+ P ++GF + + K WI FNI Y LG+DG+S+ F+
Sbjct: 31 PLARMLSLVGAVAAFLITIPLWTGFDVANGGMQFVELKTWIPRFNINYHLGVDGISMLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFIT+I++ + I+ K+A+Y +AFLI+SGL+ G F +LDG+LFY+FFEA+LIP++
Sbjct: 91 VLNAFITIIVVAAGWEVIQNKVAQYNAAFLIMSGLMNGIFTSLDGVLFYVFFEASLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
+IIG WGG NR YAA KFFLYTL GSLL L++++YL+ S SF+IL WH+L I QI
Sbjct: 151 LIIGVWGGPNRVYAAFKFFLYTLFGSLLFLLALMYLFIQSGGSFSILEWHKLPIALGPQI 210
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
WLF+ F IAFA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LKLG YG LRFSLPI PD
Sbjct: 211 WLFLAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIALKLGAYGFLRFSLPIAPD 270
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
AS+ S L++ LSLI+++YI +A+VQ D+KKL+AYSSIAHMGFVTLG FM + + I+GA
Sbjct: 271 ASHELSGLVVALSLIAVVYIGFVALVQEDMKKLVAYSSIAHMGFVTLGFFMFSAMGIEGA 330
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
++QM+SH +S AMF IG +Y+++ +R I+++GG++N +P F+ F++F++AN LP T
Sbjct: 331 LVQMVSHGFVSGAMFFCIGVMYDRVHSRQIADYGGVVNTMPKFAALFMLFTMANSGLPAT 390
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL AVKFNF + ++++I AAYSL + K +IF
Sbjct: 391 SGFVGEFMVILGAVKFNFWVAFAAASSMIVGAAYSLWMYKRVIF 434
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ P+A+ + FL I K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 199 WHKLPIALGPQIWLFLAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIALKLGA 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS +++ + I ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 258 YGFLRFSLPIAPDASHELSGLVVALSLIAVVYIGFVALVQEDMKKLVAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ ++ +++H F +F G ++ + H++ I + GG+ MP
Sbjct: 318 GFFMFSAMGIEG---ALVQMVSHGFVSGAMFFCIG-VMYDRVHSRQIADYGGVVNTMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 374 AALFMLFTMANSGLPATSGFVGE 396
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 96/205 (46%), Gaps = 28/205 (13%)
Query: 684 LLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
L ++ + K+ + P H W+PD + A +++L+ ++L + Y L + LP+
Sbjct: 214 LAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAA---IALKLGAYGFL-RFSLPIAP 269
Query: 744 NWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKT 794
+ +++ L++ +++ A+ Q + K+++AYSSIAHMG + +FS + I+
Sbjct: 270 DASHELSGLVVALSLIAVVYIGFVALVQEDMKKLVAYSSIAHMGFVTLGFFMFSAMGIEG 329
Query: 795 SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCA 854
+ ++ +F+ I ++ + + ++ + G+ P A
Sbjct: 330 ALVQMVSHGFVSGAMFFCIGVMYDRV---------------HSRQIADYGGVVNTMPKFA 374
Query: 855 LIMMIFMFSLAGFPPTIGFYAKFFI 879
+ M+F + +G P T GF +F +
Sbjct: 375 ALFMLFTMANSGLPATSGFVGEFMV 399
>gi|241763300|ref|ZP_04761357.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidovorax delafieldii 2AN]
gi|241367575|gb|EER61862.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidovorax delafieldii 2AN]
Length = 491
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/423 (53%), Positives = 318/423 (75%), Gaps = 15/423 (3%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD------KKKI 224
G++++ + ++ R++ L I ++IGLL V P + GF +K +
Sbjct: 15 GALLLAVGRDEHARSVRWL------ALIGAVIGLL--VTLPLYEGFQLGSAAMQFVEKSV 66
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ FN++Y LG+DG+S WF+PLTAFIT+I+++ S + I +++ +YM AFLILSGL+IG
Sbjct: 67 WIERFNVHYHLGVDGISFWFVPLTAFITVIVVIASWESITERINQYMGAFLILSGLMIGV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALDGMLFY+FFEATLIP+++IIG WGG N+ YAA KFFLYTL+GSLLMLI++IYLY
Sbjct: 127 FSALDGMLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLIALIYLYNQ 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF+I +WH+L + Q LF FF AFA+K+P+WP+HTWLPD HVEAPT GS +LA
Sbjct: 187 SGGSFDIAAWHKLPLGSTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG LRFS+PI PDA+ ++ L+I LSL++++Y+ L+AMVQ D+KKL+AYSS+
Sbjct: 247 AIMLKLGAYGFLRFSMPIAPDAAREWAWLMIVLSLVAVVYVGLVAMVQKDMKKLVAYSSV 306
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ + + G ++QMI+H +S AMF+SIG LY+++ +R I+ +GG++N
Sbjct: 307 AHMGFVTLGFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNT 366
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P+F+ F ++F++ANC LPGT+GF+GE+M+IL AVK NF +G + ALI AAY+L +
Sbjct: 367 MPNFTAFALLFAMANCGLPGTAGFVGEWMVILGAVKANFWVGGAAALALILGAAYTLWMF 426
Query: 584 KNI 586
K +
Sbjct: 427 KRV 429
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IAAWHKLPLGSTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + + ++ + ++ A ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSMPIAPDAAREWAWLMIVLSLVAVVYVGLVAMVQKDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS + ++ H F +FLS G ++ + H+++I GG+ M
Sbjct: 312 VTLGFFIFNDLGVSG---GLVQMIAHGFVSGAMFLSIG-VLYDRVHSREIAAYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PNFTAFALLFAMANCGLPGTAGFVGE 393
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIYLYNQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F++ + + A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDIAAWHKLPLGSTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W ++++L++ +++ + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDAAREWAWLMIVLSLVAVVYVGLVAMVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPNFTAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|438000139|ref|YP_007183872.1| NADH dehydrogenase subunit M [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|429339373|gb|AFZ83795.1| NADH dehydrogenase subunit M [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
Length = 456
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/370 (60%), Positives = 296/370 (80%), Gaps = 2/370 (0%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSG 278
++ WI NI Y +GIDG+SL F+ LT+FIT+I++L + I+ +++EYM+AFLILSG
Sbjct: 28 EENYKWIGNLNINYHIGIDGISLLFLLLTSFITIIVVLAAWKSIENRVSEYMAAFLILSG 87
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L+ G F +LD +LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLLM I+ I
Sbjct: 88 LMNGVFVSLDAILFYVFFEATLIPMYIIIGIWGGPNRFYAAFKFFLYTLLGSLLMFIAFI 147
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
Y+Y IS SF IL+WH++ I+ ++QI +FI F AFA+KIP+WP HTWLPDAHVEAPT G
Sbjct: 148 YMYEISG-SFEILTWHKIKISYVQQILIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGG 206
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
S+ILAAIMLKLG YG LR SLPI PDAS S+++I LSLI+IIYI IA+VQ D+KKL+
Sbjct: 207 SIILAAIMLKLGAYGFLRLSLPILPDASASLSSMMIVLSLIAIIYIGFIAIVQEDMKKLV 266
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG+F+ + I+GAI+QMISH IS+AMF SIG LY++ +R+IS++
Sbjct: 267 AYSSIAHMGFVTLGMFVFNVVGIEGAIVQMISHGFISAAMFFSIGVLYDRAHSRIISDYN 326
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+++V+P F FF+ FS+ANC LP TSGF+GEF++I+ +V+++F + +L +T+LI SA+Y
Sbjct: 327 GLVSVMPRFVTFFVFFSMANCGLPATSGFVGEFLVIMGSVEYSFPVAILAATSLILSASY 386
Query: 579 SLCLSKNIIF 588
SL + K I F
Sbjct: 387 SLWMLKRIAF 396
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 106/197 (53%), Gaps = 8/197 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ ++ + F+ K +P HTWLPD+ +E PT S +I AA M+ G
Sbjct: 161 WHKIKISYVQQILIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGGS-IILAAIMLKLGA 219
Query: 85 FMITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R+S P+ ++ +LS ++ + ++ A ++G + I+Q D+K+++AYS+++ +G++T+
Sbjct: 220 YGFLRLSLPILPDASASLSSMMIVLSLIAIIYIGFIAIVQEDMKKLVAYSSIAHMGFVTL 279
Query: 143 GL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ V +I +++H F A +F S G ++ + H++ I + GL MP
Sbjct: 280 GMFVFNVVGIEGAIVQMISHGFISAAMFFSIG-VLYDRAHSRIISDYNGLVSVMPRFVTF 338
Query: 200 SLIGLLSLVGAPFFSGF 216
+ ++ G P SGF
Sbjct: 339 FVFFSMANCGLPATSGF 355
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 120/258 (46%), Gaps = 32/258 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S M +Y I+G+ E+ + ++ IK++ + ++ ++ +
Sbjct: 127 AAFKFFLYTLLGSLLMFIAFIYMYEISGSFEILT-WHKIKISYVQQILIFIAFM---AAF 182
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + PFH W+PD + G SII+ ++ KL + + RL + L +
Sbjct: 183 AVKIPMWPFHTWLPDAHVEAPTGGSIILAAIML---KLGAYGFL-RLSLPILPDASASLS 238
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLII 801
++++L++ ++I AI Q + K+++AYSSIAHM G+ +F+++ I+ + +I
Sbjct: 239 SMMIVLSLIAIIYIGFIAIVQEDMKKLVAYSSIAHMGFVTLGMFVFNVVGIEGAIVQMIS 298
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ +F F + +L + + GL P + F
Sbjct: 299 HGFISAAMF------------FSIGVLYDRAHSRIISDYN---GLVSVMPRFVTFFVFFS 343
Query: 862 FSLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 344 MANCGLPATSGFVGEFLV 361
>gi|451813071|ref|YP_007449524.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|451779040|gb|AGF49920.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 496
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/370 (60%), Positives = 296/370 (80%), Gaps = 2/370 (0%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSG 278
++ WI NI Y +GIDG+SL F+ LT+FIT+I++L + I+ +++EYM+AFLILSG
Sbjct: 68 EENYKWIGNLNINYHIGIDGISLLFLLLTSFITIIVVLAAWKSIENRVSEYMAAFLILSG 127
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L+ G F +LD +LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLLM I+ I
Sbjct: 128 LMNGVFVSLDAILFYVFFEATLIPMYIIIGIWGGPNRFYAAFKFFLYTLLGSLLMFIAFI 187
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
Y+Y IS SF IL+WH++ I+ ++QI +FI F AFA+KIP+WP HTWLPDAHVEAPT G
Sbjct: 188 YMYEISG-SFEILTWHKIKISYVQQILIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGG 246
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
S+ILAAIMLKLG YG LR SLPI PDAS S+++I LSLI+IIYI IA+VQ D+KKL+
Sbjct: 247 SIILAAIMLKLGAYGFLRLSLPILPDASASLSSMMIVLSLIAIIYIGFIAIVQEDMKKLV 306
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG+F+ + I+GAI+QMISH IS+AMF SIG LY++ +R+IS++
Sbjct: 307 AYSSIAHMGFVTLGMFVFNVVGIEGAIVQMISHGFISAAMFFSIGVLYDRAHSRIISDYN 366
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+++V+P F FF+ FS+ANC LP TSGF+GEF++I+ +V+++F + +L +T+LI SA+Y
Sbjct: 367 GLVSVMPRFVTFFVFFSMANCGLPATSGFVGEFLVIMGSVEYSFPVAILAATSLILSASY 426
Query: 579 SLCLSKNIIF 588
SL + K I F
Sbjct: 427 SLWMLKRIAF 436
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 106/197 (53%), Gaps = 8/197 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ ++ + F+ K +P HTWLPD+ +E PT S +I AA M+ G
Sbjct: 201 WHKIKISYVQQILIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGGS-IILAAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R+S P+ ++ +LS ++ + ++ A ++G + I+Q D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRLSLPILPDASASLSSMMIVLSLIAIIYIGFIAIVQEDMKKLVAYSSIAHMGFVTL 319
Query: 143 GL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ V +I +++H F A +F S G ++ + H++ I + GL MP
Sbjct: 320 GMFVFNVVGIEGAIVQMISHGFISAAMFFSIG-VLYDRAHSRIISDYNGLVSVMPRFVTF 378
Query: 200 SLIGLLSLVGAPFFSGF 216
+ ++ G P SGF
Sbjct: 379 FVFFSMANCGLPATSGF 395
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 120/258 (46%), Gaps = 32/258 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S M +Y I+G+ E+ + ++ IK++ + ++ ++ +
Sbjct: 167 AAFKFFLYTLLGSLLMFIAFIYMYEISGSFEILT-WHKIKISYVQQILIFIAFM---AAF 222
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + PFH W+PD + G SII+ ++ KL + + RL + L +
Sbjct: 223 AVKIPMWPFHTWLPDAHVEAPTGGSIILAAIML---KLGAYGFL-RLSLPILPDASASLS 278
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLII 801
++++L++ ++I AI Q + K+++AYSSIAHM G+ +F+++ I+ + +I
Sbjct: 279 SMMIVLSLIAIIYIGFIAIVQEDMKKLVAYSSIAHMGFVTLGMFVFNVVGIEGAIVQMIS 338
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ +F F + +L + + GL P + F
Sbjct: 339 HGFISAAMF------------FSIGVLYDRAHSRIISDYN---GLVSVMPRFVTFFVFFS 383
Query: 862 FSLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 384 MANCGLPATSGFVGEFLV 401
>gi|296136694|ref|YP_003643936.1| hypothetical protein Tint_2256 [Thiomonas intermedia K12]
gi|410694424|ref|YP_003625046.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Thiomonas sp. 3As]
gi|294340849|emb|CAZ89244.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Thiomonas sp. 3As]
gi|295796816|gb|ADG31606.1| hypothetical protein Tint_2256 [Thiomonas intermedia K12]
Length = 494
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/365 (60%), Positives = 293/365 (80%), Gaps = 1/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI FNI Y LGIDG+SLWF+PLTA +T+I+I+ + + IK +++ Y+ AFLILSGL+IG
Sbjct: 70 WIRPFNINYALGIDGVSLWFVPLTALMTVIVIISAWEVIKDRVSLYLGAFLILSGLMIGV 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D +LFY+FFEATLIP+++IIG WGG R YAA KFFLYTL GSLLML+++IYLY
Sbjct: 130 FAATDALLFYVFFEATLIPMYLIIGIWGGPRRVYAAFKFFLYTLAGSLLMLVALIYLYLQ 189
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF+I +W+ + ++ QI++FI FF AFA+KIP+WP+HTWLPDAHVEAPT GSVILA
Sbjct: 190 SGGSFDIANWYHVPLSMTAQIFIFIAFFFAFAVKIPMWPVHTWLPDAHVEAPTGGSVILA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG +RFSLP+ PDAS+ + ++I LSLI++IYI +A+VQ D+KKL+AYSSI
Sbjct: 250 AIMLKLGAYGFIRFSLPMLPDASHALAPVMIALSLIAVIYIGFVALVQADMKKLVAYSSI 309
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ + + +QG ++QMISH IS AMF++IG LY++M TR I+++GG+ N
Sbjct: 310 AHMGFVTLGFFLFSDLGVQGGLVQMISHGFISGAMFLTIGVLYDRMHTRQIADYGGVTNT 369
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ ++F +AN LPGTSGF+GE+M+IL+AVKFNF IG+L +T LI +A+Y+L +
Sbjct: 370 MPKFAALAVLFGMANAGLPGTSGFVGEWMVILAAVKFNFWIGLLAATTLILAASYTLWMI 429
Query: 584 KNIIF 588
K + F
Sbjct: 430 KRVYF 434
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 112/203 (55%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
WY PL++TA + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 199 WYHVPLSMTAQIFIFIAFFFAFAVKIPMWPVHTWLPDAHVEAPTGGSVIL-AAIMLKLGA 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ AL+ +++ + I ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 258 YGFIRFSLPMLPDASHALAPVMIALSLIAVIYIGFVALVQADMKKLVAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV + +++H F +FL+ G ++ + H + I + GG+ MP
Sbjct: 318 GFFLFSDLGVQG---GLVQMISHGFISGAMFLTIG-VLYDRMHTRQIADYGGVTNTMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 374 AALAVLFGMANAGLPGTSGFVGE 396
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 35/260 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
AA K+F+ + S ML + LY L+ F++ ++ S+ A +
Sbjct: 164 AAFKFFLYTLAGSLLMLVALIYLY-----LQSGGSFDIANWYHVPLSMTAQIFIFIAFFF 218
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G S+I+ ++ KL + I R + L
Sbjct: 219 AFAVKIPMWPVHTWLPDAHVEAPTGGSVILAAIML---KLGAYGFI-RFSLPMLPDASHA 274
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTSHNNL 799
+++ L++ ++I A+ Q + K+++AYSSIAHMG + LFS + ++
Sbjct: 275 LAPVMIALSLIAVIYIGFVALVQADMKKLVAYSSIAHMGFVTLGFFLFSDLGVQ------ 328
Query: 800 IIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
GL +I++ F F I +L + T ++ + G+ P A + ++
Sbjct: 329 -------GGLVQMISHGFISGAMFLTIGVLYDRM--HTRQIADYGGVTNTMPKFAALAVL 379
Query: 860 FMFSLAGFPPTIGFYAKFFI 879
F + AG P T GF ++ +
Sbjct: 380 FGMANAGLPGTSGFVGEWMV 399
>gi|337280279|ref|YP_004619751.1| NADH:ubiquinone oxidoreductase subunit 13 or 4, chain M
[Ramlibacter tataouinensis TTB310]
gi|334731356|gb|AEG93732.1| Candidate NADH:ubiquinone oxidoreductase subunit 13 or 4, chain M
[Ramlibacter tataouinensis TTB310]
Length = 491
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/438 (51%), Positives = 321/438 (73%), Gaps = 18/438 (4%)
Query: 156 LMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSG 215
L++ A + +LF G++++ + + R + L I SL+G L V P +
Sbjct: 3 LLSLAIWTPILF---GAVLLALGRDDQARAVRWL------ALIGSLVGFL--VTLPLYGR 51
Query: 216 FYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAE 268
F ++ WI+ FNI+Y LG+DG+S WF+ LTAFIT+++++ + + I +++ +
Sbjct: 52 FDRGSSAMQFVERAPWIERFNIHYHLGVDGISFWFVLLTAFITVVVVISAWEAITERVNQ 111
Query: 269 YMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLM 328
YM AFLILSGL+IG FCALDGMLFY+FFEATLIP+++IIG WGG + YAA KFFLYTL+
Sbjct: 112 YMGAFLILSGLMIGVFCALDGMLFYVFFEATLIPMYLIIGIWGGPRKIYAAFKFFLYTLL 171
Query: 329 GSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLP 388
GSLLMLI++IYLY S SF+I +WH+L + Q LF FF AFA+K+P++P+HTWLP
Sbjct: 172 GSLLMLIALIYLYTRSGGSFDIAAWHRLPLPATAQTLLFFAFFAAFAVKVPMFPVHTWLP 231
Query: 389 DAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
D HVEAPT GS +LAAIMLKLG YG LRFS+PI PDAS ++ L+I LSLI++IY+ L+A
Sbjct: 232 DVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASREWAWLMIALSLIAVIYVGLVA 291
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQ 508
MVQ D+KKL+AYSS+AHMGFVTLG F+ + + G ++QMI+H +S AMF+ IG LY++
Sbjct: 292 MVQQDMKKLVAYSSVAHMGFVTLGFFIFNDLGVAGGLVQMIAHGFVSGAMFLCIGVLYDR 351
Query: 509 MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLT 568
+ +R I+++GG++N +P+F+ F ++F++AN LP T+GF+GE+M+IL VK NF +G+L
Sbjct: 352 VHSREIASYGGVVNTMPNFTAFALLFAMANAGLPATAGFVGEWMVILGTVKANFWLGLLA 411
Query: 569 STALIFSAAYSLCLSKNI 586
+TALI+ AAY+L + K +
Sbjct: 412 ATALIWGAAYTLWMFKRV 429
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL TA F K FP+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IAAWHRLPLPATAQTLLFFAFFAAFAVKVPMFPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S +++ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSMPIAPDASREWAWLMIALSLIAVIYVGLVAMVQQDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGV+ + ++ H F +FL G ++ + H+++I + GG+ M
Sbjct: 312 VTLGFFIFNDLGVAG---GLVQMIAHGFVSGAMFLCIG-VLYDRVHSREIASYGGVVNTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PNFTAFALLFAMANAGLPATAGFVGE 393
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 126/285 (44%), Gaps = 36/285 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + LY +G F++ + + A +LL
Sbjct: 161 AAFKFFLYTLLGSLLMLIALIYLYTRSG-----GSFDIAAWHRLPLPATAQTLLFFAFFA 215
Query: 691 SF--KLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
+F K+ + P H W+PDV+ G++++ ++L KL + + R +
Sbjct: 216 AFAVKVPMFPVHTWLPDVHVEAPTGGSAVLAAIML----KLGAYGFL-RFSMPIAPDASR 270
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W +++ L++ ++I + A+ Q + K+++AYSS+AHMG + IFN
Sbjct: 271 EWAWLMIALSLIAVIYVGLVAMVQQDMKKLVAYSSVAHMGFVTL----------GFFIFN 320
Query: 804 S--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
GL +I + F F I +L + ++ E+ + G+ P ++F
Sbjct: 321 DLGVAGGLVQMIAHGFVSGAMFLCIGVLYDRVHSR--EIASYGGVVNTMPNFTAFALLFA 378
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFETQK--IWLLLLIIMCSLIGAK 904
+ AG P T GF ++ + I T K WL LL + GA
Sbjct: 379 MANAGLPATAGFVGEWMV---ILGTVKANFWLGLLAATALIWGAA 420
>gi|406998663|gb|EKE16573.1| hypothetical protein ACD_10C00909G0002 [uncultured bacterium]
Length = 494
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/404 (54%), Positives = 305/404 (75%), Gaps = 9/404 (2%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +L G ++ LV P ++GF + WI FNI Y LG+DG+S+ F+
Sbjct: 31 PLARMLALFGAIASFLVTLPLWTGFDVASGGMQFVELHNWIPRFNINYHLGVDGISMLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AF+T+I++ + IK+K+A+Y +AFLI+SGL+ G F +LDGMLFY+FFEA+LIP++
Sbjct: 91 LLNAFVTIIVVTAGWEVIKEKVAQYNAAFLIMSGLMNGIFTSLDGMLFYVFFEASLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
+IIG WGG+NR YAA KFFLYTL GSLL L++++YL+ S SF+IL WH+L I Q
Sbjct: 151 LIIGVWGGANRVYAAFKFFLYTLFGSLLFLLALMYLFIQSGGSFSILEWHKLPIALGSQT 210
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
WLFI F +AFA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LKLG YG LRFSLPI PD
Sbjct: 211 WLFIAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIALKLGAYGFLRFSLPILPD 270
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
AS S L+I LSLI+++YI +A+VQ D+KKL+AYSSIAHMGFVTLG FM + + I+GA
Sbjct: 271 ASRELSGLVIALSLIAVVYIGFVALVQSDMKKLVAYSSIAHMGFVTLGFFMFSPMGIEGA 330
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
++QM+SH +S AMF IG +Y+++ +R I+++GG++N +P F+ F++FS+AN LP T
Sbjct: 331 LVQMVSHGFVSGAMFFCIGVMYDRVHSRQIADYGGVVNTMPKFAALFMLFSMANAGLPAT 390
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL+AVKFNF + +++++ AAY+L + K +IF
Sbjct: 391 SGFVGEFMVILAAVKFNFWVAFAAASSMVIGAAYTLWMYKRVIF 434
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ P+A+ + F+ + K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 199 WHKLPIALGSQTWLFIAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGS-IVLAAIALKLGA 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS +++ + I ++G + ++Q+D+K+++AYS+++ +G++T+
Sbjct: 258 YGFLRFSLPILPDASRELSGLVIALSLIAVVYIGFVALVQSDMKKLVAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ ++ +++H F +F G ++ + H++ I + GG+ MP
Sbjct: 318 GFFMFSPMGIEG---ALVQMVSHGFVSGAMFFCIG-VMYDRVHSRQIADYGGVVNTMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 374 AALFMLFSMANAGLPATSGFVGE 396
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 137/292 (46%), Gaps = 42/292 (14%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ L L + + N ++ AA K+F+ + L+G + L
Sbjct: 137 LFYVFFEASLIPLYLIIGVWGGANRVY---AAFKFFL-------YTLFGSLLFLLALMYL 186
Query: 661 ELQS--IFNVIKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVYQGASIIITL 716
+QS F++++ + + ++ + + L I +V + K+ + P H W+PD + A ++
Sbjct: 187 FIQSGGSFSILEWHKLPIALGSQTWLFIAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGSI 246
Query: 717 LLSTTPKLSLFVIIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKR 772
+L+ ++L + Y L + LP++ + + +++ L++ +++ A+ Q + K+
Sbjct: 247 VLAA---IALKLGAYGFL-RFSLPILPDASRELSGLVIALSLIAVVYIGFVALVQSDMKK 302
Query: 773 MIAYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
++AYSSIAHMG + +FS + I+ + ++ +F+ I ++ +
Sbjct: 303 LVAYSSIAHMGFVTLGFFMFSPMGIEGALVQMVSHGFVSGAMFFCIGVMYDRV------- 355
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ + G+ P A + M+F + AG P T GF +F +
Sbjct: 356 --------HSRQIADYGGVVNTMPKFAALFMLFSMANAGLPATSGFVGEFMV 399
>gi|160900600|ref|YP_001566182.1| proton-translocating NADH-quinone oxidoreductase subunit M [Delftia
acidovorans SPH-1]
gi|333913102|ref|YP_004486834.1| proton-translocating NADH-quinone oxidoreductase subunit M [Delftia
sp. Cs1-4]
gi|160366184|gb|ABX37797.1| proton-translocating NADH-quinone oxidoreductase, chain M [Delftia
acidovorans SPH-1]
gi|333743302|gb|AEF88479.1| proton-translocating NADH-quinone oxidoreductase, chain M [Delftia
sp. Cs1-4]
Length = 491
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/367 (58%), Positives = 296/367 (80%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K +WI+ FNIYY LG+DG+S WF+PLTAFIT+I+++ S + I +++ +YM AFLILSGL
Sbjct: 63 EKALWIERFNIYYHLGVDGISFWFVPLTAFITVIVVIASWENITERVNQYMGAFLILSGL 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALDG+LFY+FFEATLIP+++IIG WGG NR YAA KFFLYTLMGSLL LI++IY
Sbjct: 123 MVGVFSALDGLLFYVFFEATLIPMYLIIGIWGGPNRIYAAFKFFLYTLMGSLLTLIAIIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY S SF IL WH+L ++ Q +F FF AFA+K+P+WP+HTWLPD HVEAPT GS
Sbjct: 183 LYTQSGGSFEILDWHKLPLSMTAQTLIFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+LAAIMLKLG YG LRFS+PI PDAS+ ++ L+I LSL+++IY+ ++A+VQ D+KKL+A
Sbjct: 243 AVLAAIMLKLGAYGFLRFSMPIAPDASHKWAWLVIALSLVAVIYVGVVALVQKDMKKLVA 302
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG F+ + + G I+QMI+H +S AMF+ IG LY+++ +R I+++GG
Sbjct: 303 YSSVAHMGFVTLGFFIFNPLGVAGGIVQMIAHGFVSGAMFLCIGVLYDRVHSREIASYGG 362
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ F ++F++ANC LP T+GF+GE+M+IL AV++NF IG+ +TALIF AAY+
Sbjct: 363 VVNTMPKFAAFALLFAMANCGLPATAGFVGEWMVILGAVQYNFWIGLGAATALIFGAAYT 422
Query: 580 LCLSKNI 586
L + K +
Sbjct: 423 LWMYKRV 429
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL++TA F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLSMTAQTLIFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + + ++G++ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDASHKWAWLVIALSLVAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV+ I ++ H F +FL G ++ + H+++I + GG+ MP
Sbjct: 315 GFFIFNPLGVAG---GIVQMIAHGFVSGAMFLCIG-VLYDRVHSREIASYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPATAGFVGE 393
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ ++ S L I LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNRIY---AAFKFFLYTLMGSLLTLIAIIYLYTQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLS--FKLGISPFHMWVPDVY-----QGASII 713
F ++ + + S+ A +L+ + K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFEILDWHKLPLSMTAQTLIFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I V A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDASHKWAWLVIALSLVAVIYVGVVALVQKDMKKL 300
Query: 774 IAYSSIAHMG 783
+AYSS+AHMG
Sbjct: 301 VAYSSVAHMG 310
>gi|397661450|ref|YP_006502150.1| NADH-ubiquinone oxidoreductase subunit M [Taylorella equigenitalis
ATCC 35865]
gi|394349629|gb|AFN35543.1| NADH-ubiquinone oxidoreductase, chain M [Taylorella equigenitalis
ATCC 35865]
Length = 493
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/389 (58%), Positives = 300/389 (77%), Gaps = 8/389 (2%)
Query: 207 LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
+V P +GF + ++ WI FN +Y LG+DG+S+WFI LTA +++I+
Sbjct: 47 VVTIPLIAGFDASTSNFQFEENIAWISAFNAHYHLGVDGISVWFILLTAITNILVIVAGW 106
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ IK ++++YM+AFLILSGL+IG F ++DG+LFY+FFEATLIP++IIIG WGG NR YAA
Sbjct: 107 EVIKSRISQYMAAFLILSGLMIGVFASIDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAA 166
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTL+GSLL L++ IYLY S +F+I W L + Q+++F F AFA+K+P
Sbjct: 167 FKFFLYTLLGSLLTLVAFIYLYSQSG-TFDIAQWQDLPLALTPQLFIFFALFAAFAVKVP 225
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS + L+ITLSL
Sbjct: 226 MWPVHTWLPDAHVEAPTGGSMVLAAIMLKLGAYGFLRFSLPITPDASQEMAWLMITLSLA 285
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+IIYISL+A+VQ D+KKLIAYSS+AHMGFVTLG F+ T I I+GAIIQMISH +S+AMF
Sbjct: 286 AIIYISLVAIVQEDMKKLIAYSSVAHMGFVTLGTFLFTSIGIEGAIIQMISHGFVSAAMF 345
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ IG +Y+++ +R I ++GG+INV+P F FF++FS+AN LPGTSGFIGEF +IL+AV+
Sbjct: 346 MCIGVMYDRLHSRQIKDYGGVINVMPKFVTFFVLFSMANSGLPGTSGFIGEFYVILAAVQ 405
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
NF IG+L +T+LI AAYSL + K + +
Sbjct: 406 HNFWIGLLAATSLILGAAYSLWMVKRVAY 434
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVT 81
I W D PLA+T L F K +P+HTWLPD+ +E PT S ++ AA M+
Sbjct: 196 IAQWQDLPLALTPQLFIFFALFAAFAVKVPMWPVHTWLPDAHVEAPTGGS-MVLAAIMLK 254
Query: 82 AGIFMITRMS-PLFELSNTALSIILFIGAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ ++ ++ ++ ++ A ++ L+ I+Q D+K++IAYS+++ +G+
Sbjct: 255 LGAYGFLRFSLPITPDASQEMAWLMITLSLAAIIYISLVAIVQEDMKKLIAYSSVAHMGF 314
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G +G+ +I +++H F A +F+ G ++ + H++ I++ GG+ M
Sbjct: 315 VTLGTFLFTSIGIEG---AIIQMISHGFVSAAMFMCIG-VMYDRLHSRQIKDYGGVINVM 370
Query: 194 PITCITSLIGLLSLVGAPFFSGF 216
P ++ ++ G P SGF
Sbjct: 371 PKFVTFFVLFSMANSGLPGTSGF 393
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 137/319 (42%), Gaps = 48/319 (15%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + N ++ AA K+F+ +L S L LY +GT
Sbjct: 138 LFYVFFEATLIPMYIIIGVWGGPNRVY---AAFKFFLYTLLGSLLTLVAFIYLYSQSGT- 193
Query: 661 ELQSIFNVIKLNNINCSVLA--LSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLL 718
F++ + ++ ++ + + K+ + P H W+PD + A
Sbjct: 194 -----FDIAQWQDLPLALTPQLFIFFALFAAFAVKVPMWPVHTWLPDAHVEAP------- 241
Query: 719 STTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNF 770
T + L I+ +L ++ LP+ + + +++ L++ ++I ++ AI Q +
Sbjct: 242 -TGGSMVLAAIMLKLGAYGFLRFSLPITPDASQEMAWLMITLSLAAIIYISLVAIVQEDM 300
Query: 771 KRMIAYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
K++IAYSS+AHMG + LF+ I I+ + +I + +F I ++ L
Sbjct: 301 KKLIAYSSVAHMGFVTLGTFLFTSIGIEGAIIQMISHGFVSAAMFMCIGVMYDRL----- 355
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
+ ++ + G+ P ++F + +G P T GF +F++ +
Sbjct: 356 ----------HSRQIKDYGGVINVMPKFVTFFVLFSMANSGLPGTSGFIGEFYVILAAVQ 405
Query: 886 TQKIWLLLLIIMCSLIGAK 904
W+ LL ++GA
Sbjct: 406 -HNFWIGLLAATSLILGAA 423
>gi|91776401|ref|YP_546157.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacillus flagellatus KT]
gi|91710388|gb|ABE50316.1| NADH dehydrogenase subunit M [Methylobacillus flagellatus KT]
Length = 495
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/377 (55%), Positives = 297/377 (78%), Gaps = 3/377 (0%)
Query: 213 FSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMS 271
+ GF ++ + WI FNI Y LG+DG+++ I LT+F T I+++ + I+K++A+YM+
Sbjct: 59 YGGFQFVERLQ-WIPAFNIQYHLGVDGIAVPLILLTSFTTFIVVIAGWEVIEKRVAQYMA 117
Query: 272 AFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSL 331
AFLI+SG++IG F ALD +L+YIF+EA LIP+F++IG WGG NR YA IKFFLYTL+GSL
Sbjct: 118 AFLIMSGIMIGVFSALDAILYYIFWEAMLIPMFLVIGIWGGPNRVYATIKFFLYTLLGSL 177
Query: 332 LMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAH 391
LML++ IYLY+ S SF+I ++++ + QIWLF+ FF+AFA+KIP+WP+HTWLPDAH
Sbjct: 178 LMLVAFIYLYHQSG-SFDITDYYRMPLALDVQIWLFVAFFMAFAVKIPMWPVHTWLPDAH 236
Query: 392 VEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQ 451
VEAPT GSV+LAAI LKLG Y LRF++PI PDAS+Y + +ITLSLI+++YI+L+A+VQ
Sbjct: 237 VEAPTGGSVVLAAIALKLGGYSFLRFAMPIAPDASHYLAGFMITLSLIAVVYIALVALVQ 296
Query: 452 IDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
D+KKLIAYSSI+HMGFVTLG F+ + ++GAI+QMISH IS+AMF+ +G LY++M +
Sbjct: 297 KDMKKLIAYSSISHMGFVTLGFFLFNPLGLEGAIVQMISHGFISAAMFLCVGVLYDRMHS 356
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++N +P F+ F ++F++AN LPGTSGF+GEFM+IL V+ NF L +T
Sbjct: 357 RQIADYGGVVNTMPVFTAFAVLFAMANAGLPGTSGFVGEFMVILGTVQVNFWYAFLAATT 416
Query: 572 LIFSAAYSLCLSKNIIF 588
LIF AAY+L + K + +
Sbjct: 417 LIFGAAYTLWMVKRVYY 433
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 107/202 (52%), Gaps = 12/202 (5%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y PLA+ + F+ + K +P+HTWLPD+ +E PT S ++ A + G
Sbjct: 198 YYRMPLALDVQIWLFVAFFMAFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAAIALKLGGY 257
Query: 85 FMITRMSPLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
+ P+ + S+ ++ + I ++ L+ ++Q D+K++IAYS++S +G++T+G
Sbjct: 258 SFLRFAMPIAPDASHYLAGFMITLSLIAVVYIALVALVQKDMKKLIAYSSISHMGFVTLG 317
Query: 144 ------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITC 197
LG+ +I +++H F A +FL G ++ + H++ I + GG+ MP+
Sbjct: 318 FFLFNPLGLEG---AIVQMISHGFISAAMFLCVG-VLYDRMHSRQIADYGGVVNTMPVFT 373
Query: 198 ITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 374 AFAVLFAMANAGLPGTSGFVGE 395
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 124/276 (44%), Gaps = 29/276 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ A IK+F+ +L S ML LY +G+ ++ + +
Sbjct: 146 LIPMFLVIGIWGGPNRVY---ATIKFFLYTLLGSLLMLVAFIYLYHQSGSFDITDYYRM- 201
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
+ V + + + K+ + P H W+PD + A +++L+ ++L +
Sbjct: 202 ---PLALDVQIWLFVAFFMAFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAA---IALKLG 255
Query: 730 IYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
Y L + +P+ + L + L++ +++ + A+ Q + K++IAYSSI+HMG +
Sbjct: 256 GYSFL-RFAMPIAPDASHYLAGFMITLSLIAVVYIALVALVQKDMKKLIAYSSISHMGFV 314
Query: 786 LFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
+FN + + +I++ F F + +L + ++ ++ +
Sbjct: 315 TL----------GFFLFNPLGLEGAIVQMISHGFISAAMFLCVGVLYDRMHSR--QIADY 362
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P ++F + AG P T GF +F +
Sbjct: 363 GGVVNTMPVFTAFAVLFAMANAGLPGTSGFVGEFMV 398
>gi|319779210|ref|YP_004130123.1| NADH-ubiquinone oxidoreductase subunit M [Taylorella equigenitalis
MCE9]
gi|317109234|gb|ADU91980.1| NADH-ubiquinone oxidoreductase chain M [Taylorella equigenitalis
MCE9]
gi|399114623|emb|CCG17417.1| NADH-ubiquinone oxidoreductase, chain M [Taylorella equigenitalis
14/56]
Length = 493
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/389 (58%), Positives = 300/389 (77%), Gaps = 8/389 (2%)
Query: 207 LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
+V P +GF + ++ WI FN +Y LG+DG+S+WFI LTA +++I+
Sbjct: 47 VVTIPLIAGFDASTSNFQFEENIAWISAFNAHYHLGVDGISVWFILLTAITNILVIVAGW 106
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ IK ++++YM+AFLILSGL+IG F +LDG+LFY+FFEATLIP++IIIG WGG NR YAA
Sbjct: 107 EVIKSRISQYMAAFLILSGLMIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAA 166
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTL+GSLL L++ IYLY S +F+I W L + Q+++F F AFA+K+P
Sbjct: 167 FKFFLYTLLGSLLTLVAFIYLYSQSG-TFDIAQWQDLPLALTPQLFIFFALFAAFAVKVP 225
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRFSLPI PDAS + L+ITLSL
Sbjct: 226 MWPVHTWLPDAHVEAPTGGSMVLAAIMLKLGAYGFLRFSLPITPDASQEMAWLMITLSLA 285
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+IIYISL+A+VQ D+KKLIAYSS+AHMGFVTLG F+ T I ++GAIIQMISH +S+AMF
Sbjct: 286 AIIYISLVAIVQEDMKKLIAYSSVAHMGFVTLGTFLFTSIGLEGAIIQMISHGFVSAAMF 345
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ IG +Y+++ +R I ++GG+INV+P F FF++FS+AN LPGTSGFIGEF +IL+AV+
Sbjct: 346 MCIGVMYDRLHSRQIKDYGGVINVMPKFVTFFVLFSMANSGLPGTSGFIGEFYVILAAVQ 405
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
NF IG+L +T+LI AAYSL + K + +
Sbjct: 406 HNFWIGLLAATSLILGAAYSLWMVKRVAY 434
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVT 81
I W D PLA+T L F K +P+HTWLPD+ +E PT S ++ AA M+
Sbjct: 196 IAQWQDLPLALTPQLFIFFALFAAFAVKVPMWPVHTWLPDAHVEAPTGGS-MVLAAIMLK 254
Query: 82 AGIFMITRMS-PLFELSNTALSIILFIGAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ ++ ++ ++ ++ A ++ L+ I+Q D+K++IAYS+++ +G+
Sbjct: 255 LGAYGFLRFSLPITPDASQEMAWLMITLSLAAIIYISLVAIVQEDMKKLIAYSSVAHMGF 314
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G +G+ +I +++H F A +F+ G ++ + H++ I++ GG+ M
Sbjct: 315 VTLGTFLFTSIGLEG---AIIQMISHGFVSAAMFMCIG-VMYDRLHSRQIKDYGGVINVM 370
Query: 194 PITCITSLIGLLSLVGAPFFSGF 216
P ++ ++ G P SGF
Sbjct: 371 PKFVTFFVLFSMANSGLPGTSGF 393
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 125/289 (43%), Gaps = 45/289 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
AA K+F+ +L S L LY +GT F++ + ++ ++ +
Sbjct: 165 AAFKFFLYTLLGSLLTLVAFIYLYSQSGT------FDIAQWQDLPLALTPQLFIFFALFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+ K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 219 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSMVLAAIMLKLGAYGFLRFSLPITPD 270
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTS 795
+ +++ L++ ++I ++ AI Q + K++IAYSS+AHMG + LF+ I ++ +
Sbjct: 271 ASQEMAWLMITLSLAAIIYISLVAIVQEDMKKLIAYSSVAHMGFVTLGTFLFTSIGLEGA 330
Query: 796 HNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
+I + +F I ++ L + ++ + G+ P
Sbjct: 331 IIQMISHGFVSAAMFMCIGVMYDRL---------------HSRQIKDYGGVINVMPKFVT 375
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
++F + +G P T GF +F++ + W+ LL ++GA
Sbjct: 376 FFVLFSMANSGLPGTSGFIGEFYVILAAVQ-HNFWIGLLAATSLILGAA 423
>gi|451823199|ref|YP_007459473.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775999|gb|AGF47040.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 495
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/374 (59%), Positives = 298/374 (79%), Gaps = 2/374 (0%)
Query: 216 FYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIK-KKLAEYMSAFL 274
F+ ++K WI F++ Y LGIDG+SLWF+ L +F+T+I+I+ SLD K K+++Y++AFL
Sbjct: 63 FFQFEEKYSWIKSFDVTYHLGIDGISLWFLILNSFMTIIVIVSSLDSKITKVSQYLAAFL 122
Query: 275 ILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLML 334
ILSGLI G F +LDG+LFY+FFEATLIP+++IIG WGG NR YAA KFFLYTL+GSLLM
Sbjct: 123 ILSGLINGVFSSLDGILFYVFFEATLIPMYLIIGIWGGPNRFYAAFKFFLYTLLGSLLMF 182
Query: 335 ISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
++ +YL ISN SF I+ WH + ++ IEQ+ +F++F +AFA+KIP+WP HTWLPDAHVEA
Sbjct: 183 VAFVYLSNISN-SFEIIDWHYVKLSYIEQMIIFLSFLMAFAVKIPMWPFHTWLPDAHVEA 241
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GS+ILA+IMLKLG YGL+RFSLPI PDAS S +++TLSLI+I+YI +A+VQ D+
Sbjct: 242 PTAGSIILASIMLKLGAYGLIRFSLPIVPDASISLSGMMVTLSLIAIVYIGFVAIVQKDM 301
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KKL+AYSSIAHMGFVTLGIF+ + ++GAIIQMISH +S+AMF IG LY++ +RLI
Sbjct: 302 KKLVAYSSIAHMGFVTLGIFIFNQAGVEGAIIQMISHGFVSAAMFFCIGVLYDRTHSRLI 361
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
S++ G++N +P F FF+ FS+AN LP TSGF+GEF +I+ +V++ F + VL S +LI
Sbjct: 362 SDYAGLVNRMPTFVTFFVFFSMANAGLPATSGFVGEFFVIMGSVQYKFIVAVLASLSLIL 421
Query: 575 SAAYSLCLSKNIIF 588
SA+YSL L K I F
Sbjct: 422 SASYSLWLVKRISF 435
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 107/197 (54%), Gaps = 8/197 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L+ + FL + K +P HTWLPD+ +E PT A ++I A+ M+ G
Sbjct: 200 WHYVKLSYIEQMIIFLSFLMAFAVKIPMWPFHTWLPDAHVEAPT-AGSIILASIMLKLGA 258
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ + R S P+ ++ +LS +++ + I ++G + I+Q D+K+++AYS+++ +G++T+
Sbjct: 259 YGLIRFSLPIVPDASISLSGMMVTLSLIAIVYIGFVAIVQKDMKKLVAYSSIAHMGFVTL 318
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ + + +I +++H F A +F G ++ + H++ I + GL MP
Sbjct: 319 GIFIFNQAGVEGAIIQMISHGFVSAAMFFCIG-VLYDRTHSRLISDYAGLVNRMPTFVTF 377
Query: 200 SLIGLLSLVGAPFFSGF 216
+ ++ G P SGF
Sbjct: 378 FVFFSMANAGLPATSGF 394
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 34/259 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S M L I+ + E+ ++ +KL+ I ++ LS L+
Sbjct: 166 AAFKFFLYTLLGSLLMFVAFVYLSNISNSFEIID-WHYVKLSYIEQMIIFLSFLM---AF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + PFH W+PD + A +++L++ I+ +L LI+ LP+V
Sbjct: 222 AVKIPMWPFHTWLPDAHVEAPTAGSIILAS--------IMLKLGAYGLIRFSLPIVPDAS 273
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
I+ +++ L++ +++ AI Q + K+++AYSSIAHMG + I IF
Sbjct: 274 ISLSGMMVTLSLIAIVYIGFVAIVQKDMKKLVAYSSIAHMGFVTLGI----------FIF 323
Query: 803 NSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
N + + +I++ F F I +L + T ++ + + GL R P + F
Sbjct: 324 NQAGVEGAIIQMISHGFVSAAMFFCIGVLYDRTHSRL--ISDYAGLVNRMPTFVTFFVFF 381
Query: 861 MFSLAGFPPTIGFYAKFFI 879
+ AG P T GF +FF+
Sbjct: 382 SMANAGLPATSGFVGEFFV 400
>gi|313200472|ref|YP_004039130.1| proton-translocating NADH-quinone oxidoreductase subunit m
[Methylovorus sp. MP688]
gi|312439788|gb|ADQ83894.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylovorus sp. MP688]
Length = 492
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/376 (56%), Positives = 297/376 (78%), Gaps = 3/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
GF ++ + WI FNI Y LG+DGL++ I LT+F T+I+++ + I+K++A+YM+A
Sbjct: 59 GGFQFQEGHR-WITSFNINYHLGVDGLAVPLIILTSFTTVIVVIAGWEVIEKRVAQYMAA 117
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FLI+SGL+IG F ALD +L+Y+F+EA LIP+F++IG WGG NR YA IKFFLYT +GSLL
Sbjct: 118 FLIMSGLMIGVFAALDAILYYMFWEAMLIPMFLVIGIWGGPNRVYATIKFFLYTFIGSLL 177
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++ IYLY+ SN SF ++ ++QL ++ QI +F+ FF+AFA+K+P+WP+HTWLPDAHV
Sbjct: 178 MLVAFIYLYHQSN-SFELVDYYQLPLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHV 236
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSV+LAAI LKLG Y LRF++PI PDA++Y S +ITLSLI+++YI+L+A+VQ
Sbjct: 237 EAPTGGSVVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQK 296
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSSI+HMGFVTLG F+ + ++GAI+QMISH +SSAMF+S+G LY++M +R
Sbjct: 297 DMKKLIAYSSISHMGFVTLGFFIFNPLGMEGAIVQMISHGFVSSAMFLSVGVLYDRMHSR 356
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+++GG++N +P F+ F ++F +AN LPGTSGF+GEFM+IL A++ NF L ST L
Sbjct: 357 QIADYGGVVNTMPTFAAFAVLFGMANAGLPGTSGFVGEFMVILGALQANFWFAFLASTTL 416
Query: 573 IFSAAYSLCLSKNIIF 588
I AAY+L + K + +
Sbjct: 417 ILGAAYTLWMVKRVFY 432
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 107/202 (52%), Gaps = 12/202 (5%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y PL+ A + FL + K +P+HTWLPD+ +E PT S ++ A + G
Sbjct: 197 YYQLPLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIALKLGGY 256
Query: 85 FMITRMSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
+ P+ + LS ++ + I ++ L+ ++Q D+K++IAYS++S +G++T+G
Sbjct: 257 SFLRFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQKDMKKLIAYSSISHMGFVTLG 316
Query: 144 ------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITC 197
LG+ +I +++H F + +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 FFIFNPLGMEG---AIVQMISHGFVSSAMFLSVG-VLYDRMHSRQIADYGGVVNTMPTFA 372
Query: 198 ITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AFAVLFGMANAGLPGTSGFVGE 394
Score = 46.6 bits (109), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 29/276 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ A IK+F+ + S ML LY + + EL + +
Sbjct: 145 LIPMFLVIGIWGGPNRVY---ATIKFFLYTFIGSLLMLVAFIYLYHQSNSFELVDYYQL- 200
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
++ L L + + K+ + P H W+PD + A +++L+ ++L +
Sbjct: 201 ---PLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA---IALKLG 254
Query: 730 IYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
Y L + +P+ + L + L++ +++ + A+ Q + K++IAYSSI+HMG +
Sbjct: 255 GYSFL-RFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQKDMKKLIAYSSISHMGFV 313
Query: 786 LFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
IFN + + +I++ F F + +L + ++ ++ +
Sbjct: 314 TL----------GFFIFNPLGMEGAIVQMISHGFVSSAMFLSVGVLYDRMHSR--QIADY 361
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A ++F + AG P T GF +F +
Sbjct: 362 GGVVNTMPTFAAFAVLFGMANAGLPGTSGFVGEFMV 397
>gi|253998395|ref|YP_003050458.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylovorus glucosetrophus SIP3-4]
gi|253985074|gb|ACT49931.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylovorus glucosetrophus SIP3-4]
Length = 492
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/376 (56%), Positives = 297/376 (78%), Gaps = 3/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
GF ++ + WI FNI Y LG+DGL++ I LT+F T+I+++ + I+K++A+YM+A
Sbjct: 59 GGFQFQEGHR-WITSFNINYHLGVDGLAVPLIILTSFTTVIVVIAGWEVIEKRVAQYMAA 117
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FLI+SGL+IG F ALD +L+Y+F+EA LIP+F++IG WGG NR YA IKFFLYT +GSLL
Sbjct: 118 FLIMSGLMIGVFAALDAILYYMFWEAMLIPMFLVIGIWGGPNRVYATIKFFLYTFIGSLL 177
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++ IYLY+ SN SF ++ ++QL ++ QI +F+ FF+AFA+K+P+WP+HTWLPDAHV
Sbjct: 178 MLVAFIYLYHQSN-SFELVDYYQLPLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHV 236
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSV+LAAI LKLG Y LRF++PI PDA++Y S +ITLSLI+++YI+L+A+VQ
Sbjct: 237 EAPTGGSVVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQK 296
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSSI+HMGFVTLG F+ + ++GAI+QMISH +SSAMF+S+G LY++M +R
Sbjct: 297 DMKKLIAYSSISHMGFVTLGFFIFNPLGMEGAIVQMISHGFVSSAMFLSVGVLYDRMHSR 356
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+++GG++N +P F+ F ++F +AN LPGTSGF+GEFM+IL A++ NF L ST L
Sbjct: 357 QIADYGGVVNTMPTFAAFAVLFGMANAGLPGTSGFVGEFMVILGALQANFWFAFLASTTL 416
Query: 573 IFSAAYSLCLSKNIIF 588
I AAY+L + K + +
Sbjct: 417 ILGAAYTLWMVKRVFY 432
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 107/202 (52%), Gaps = 12/202 (5%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y PL+ A + FL + K +P+HTWLPD+ +E PT S ++ A + G
Sbjct: 197 YYQLPLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIALKLGGY 256
Query: 85 FMITRMSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
+ P+ + LS ++ + I ++ L+ ++Q D+K++IAYS++S +G++T+G
Sbjct: 257 SFLRFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQKDMKKLIAYSSISHMGFVTLG 316
Query: 144 ------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITC 197
LG+ +I +++H F + +FLS G ++ + H++ I + GG+ MP
Sbjct: 317 FFIFNPLGMEG---AIVQMISHGFVSSAMFLSVG-VLYDRMHSRQIADYGGVVNTMPTFA 372
Query: 198 ITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 373 AFAVLFGMANAGLPGTSGFVGE 394
Score = 46.6 bits (109), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 29/276 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ A IK+F+ + S ML LY + + EL + +
Sbjct: 145 LIPMFLVIGIWGGPNRVY---ATIKFFLYTFIGSLLMLVAFIYLYHQSNSFELVDYYQL- 200
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
++ L L + + K+ + P H W+PD + A +++L+ ++L +
Sbjct: 201 ---PLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA---IALKLG 254
Query: 730 IYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
Y L + +P+ + L + L++ +++ + A+ Q + K++IAYSSI+HMG +
Sbjct: 255 GYSFL-RFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQKDMKKLIAYSSISHMGFV 313
Query: 786 LFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
IFN + + +I++ F F + +L + ++ ++ +
Sbjct: 314 TL----------GFFIFNPLGMEGAIVQMISHGFVSSAMFLSVGVLYDRMHSR--QIADY 361
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A ++F + AG P T GF +F +
Sbjct: 362 GGVVNTMPTFAAFAVLFGMANAGLPGTSGFVGEFMV 397
>gi|451811616|ref|YP_007448071.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776774|gb|AGF47773.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 494
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 300/376 (79%), Gaps = 2/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
S + ++ WI+ FNI Y LGIDG+SLWF+ L +F+T+I+IL S + IK +++Y +A
Sbjct: 60 SSLFQFEENYSWIETFNINYHLGIDGISLWFLILNSFMTVIVILSSWESIKNNISQYFAA 119
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FLILSGLI G F +LDG+LFY+FFE TLIP+++IIG WGG NR YA+ KFFLYTL+GSLL
Sbjct: 120 FLILSGLINGVFVSLDGILFYVFFETTLIPMYLIIGIWGGPNRFYASFKFFLYTLLGSLL 179
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
M I++IYL ISN S I++W+ ++I I+Q+ +F+ F++AFA+KIP+WP+HTWLPDAHV
Sbjct: 180 MFIALIYLRNISNSS-EIINWYSINIRYIDQVLIFMAFWLAFAVKIPMWPVHTWLPDAHV 238
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GS+ILA+IMLKLG YG LRFSLPI PDAS S L+I+LSLI+IIYI IA+ Q
Sbjct: 239 EAPTGGSIILASIMLKLGAYGFLRFSLPILPDASKDMSILMISLSLIAIIYIGFIAIAQR 298
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSSIAHMGFVTLGIF+ K ++GAI+QMISH +S+AMF SIG LY++ +R
Sbjct: 299 DMKKLIAYSSIAHMGFVTLGIFIFNKAGMEGAILQMISHGFVSTAMFFSIGVLYDRTHSR 358
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
LIS++ G++NV+P F FF+ FS+AN LP TSGF+GEF +I+ ++K+NF +G+LT+ +L
Sbjct: 359 LISDYSGLVNVMPTFVTFFVFFSMANSGLPVTSGFVGEFFVIMGSIKYNFVVGILTALSL 418
Query: 573 IFSAAYSLCLSKNIIF 588
+ SA+YSL L K I F
Sbjct: 419 VLSASYSLWLVKRIAF 434
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 8/197 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
WY + + F+ + K +P+HTWLPD+ +E PT S +I A+ M+ G
Sbjct: 199 WYSINIRYIDQVLIFMAFWLAFAVKIPMWPVHTWLPDAHVEAPTGGS-IILASIMLKLGA 257
Query: 85 FMITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +SI++ + I ++G + I Q D+K++IAYS+++ +G++T+
Sbjct: 258 YGFLRFSLPILPDASKDMSILMISLSLIAIIYIGFIAIAQRDMKKLIAYSSIAHMGFVTL 317
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ + + +I +++H F +F S G ++ + H++ I + GL MP
Sbjct: 318 GIFIFNKAGMEGAILQMISHGFVSTAMFFSIG-VLYDRTHSRLISDYSGLVNVMPTFVTF 376
Query: 200 SLIGLLSLVGAPFFSGF 216
+ ++ G P SGF
Sbjct: 377 FVFFSMANSGLPVTSGF 393
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S M + L I+ + E +I +IN + L+ + L
Sbjct: 165 ASFKFFLYTLLGSLLMFIALIYLRNISNSSE------IINWYSINIRYIDQVLIFMAFWL 218
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G SII L S KL + ++ LP++ +
Sbjct: 219 AFAVKIPMWPVHTWLPDAHVEAPTGGSII---LASIMLKLGAYG-----FLRFSLPILPD 270
Query: 745 WQK---ILLI-LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
K IL+I L++ ++I AI Q + K++IAYSSIAHMG + I
Sbjct: 271 ASKDMSILMISLSLIAIIYIGFIAIAQRDMKKLIAYSSIAHMGFVTLGI----------F 320
Query: 801 IFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + + +I++ F F I +L + T ++ + + GL P +
Sbjct: 321 IFNKAGMEGAILQMISHGFVSTAMFFSIGVLYDRTHSRL--ISDYSGLVNVMPTFVTFFV 378
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + +G P T GF +FF+
Sbjct: 379 FFSMANSGLPVTSGFVGEFFV 399
>gi|429462628|ref|YP_007184091.1| NADH dehydrogenase subunit M [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338142|gb|AFZ82565.1| NADH dehydrogenase subunit M [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 497
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 300/376 (79%), Gaps = 2/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
S + ++ WI+ FNI Y LGIDG+SLWF+ L +F+T+I+IL S + IK +++Y +A
Sbjct: 63 SSLFQFEENYSWIETFNINYHLGIDGISLWFLILNSFMTVIVILSSWESIKNNISQYFAA 122
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FLILSGLI G F +LDG+LFY+FFE TLIP+++IIG WGG NR YA+ KFFLYTL+GSLL
Sbjct: 123 FLILSGLINGVFVSLDGILFYVFFETTLIPMYLIIGIWGGPNRFYASFKFFLYTLLGSLL 182
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
M I++IYL ISN S I++W+ ++I I+Q+ +F+ F++AFA+KIP+WP+HTWLPDAHV
Sbjct: 183 MFIALIYLRNISNSS-EIINWYSINIRYIDQVLIFMAFWLAFAVKIPMWPVHTWLPDAHV 241
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GS+ILA+IMLKLG YG LRFSLPI PDAS S L+I+LSLI+IIYI IA+ Q
Sbjct: 242 EAPTGGSIILASIMLKLGAYGFLRFSLPILPDASKDMSILMISLSLIAIIYIGFIAIAQR 301
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSSIAHMGFVTLGIF+ K ++GAI+QMISH +S+AMF SIG LY++ +R
Sbjct: 302 DMKKLIAYSSIAHMGFVTLGIFIFNKAGMEGAILQMISHGFVSTAMFFSIGVLYDRTHSR 361
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
LIS++ G++NV+P F FF+ FS+AN LP TSGF+GEF +I+ ++K+NF +G+LT+ +L
Sbjct: 362 LISDYSGLVNVMPTFVTFFVFFSMANSGLPVTSGFVGEFFVIMGSIKYNFVVGILTALSL 421
Query: 573 IFSAAYSLCLSKNIIF 588
+ SA+YSL L K I F
Sbjct: 422 VLSASYSLWLVKRIAF 437
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 8/197 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
WY + + F+ + K +P+HTWLPD+ +E PT S +I A+ M+ G
Sbjct: 202 WYSINIRYIDQVLIFMAFWLAFAVKIPMWPVHTWLPDAHVEAPTGGS-IILASIMLKLGA 260
Query: 85 FMITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ +SI++ + I ++G + I Q D+K++IAYS+++ +G++T+
Sbjct: 261 YGFLRFSLPILPDASKDMSILMISLSLIAIIYIGFIAIAQRDMKKLIAYSSIAHMGFVTL 320
Query: 143 GLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ + + +I +++H F +F S G ++ + H++ I + GL MP
Sbjct: 321 GIFIFNKAGMEGAILQMISHGFVSTAMFFSIG-VLYDRTHSRLISDYSGLVNVMPTFVTF 379
Query: 200 SLIGLLSLVGAPFFSGF 216
+ ++ G P SGF
Sbjct: 380 FVFFSMANSGLPVTSGF 396
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 38/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S M + L I+ + E +I +IN + L+ + L
Sbjct: 168 ASFKFFLYTLLGSLLMFIALIYLRNISNSSE------IINWYSINIRYIDQVLIFMAFWL 221
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G SII L S KL + ++ LP++ +
Sbjct: 222 AFAVKIPMWPVHTWLPDAHVEAPTGGSII---LASIMLKLGAYG-----FLRFSLPILPD 273
Query: 745 WQK---ILLI-LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
K IL+I L++ ++I AI Q + K++IAYSSIAHMG + I
Sbjct: 274 ASKDMSILMISLSLIAIIYIGFIAIAQRDMKKLIAYSSIAHMGFVTLGI----------F 323
Query: 801 IFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN + + +I++ F F I +L + T ++ + + GL P +
Sbjct: 324 IFNKAGMEGAILQMISHGFVSTAMFFSIGVLYDRTHSRL--ISDYSGLVNVMPTFVTFFV 381
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
F + +G P T GF +FF+
Sbjct: 382 FFSMANSGLPVTSGFVGEFFV 402
>gi|264677210|ref|YP_003277116.1| proton-translocating NADH-quinone [Comamonas testosteroni CNB-2]
gi|299530754|ref|ZP_07044169.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Comamonas testosteroni S44]
gi|418530538|ref|ZP_13096461.1| proton-translocating NADH-quinone [Comamonas testosteroni ATCC
11996]
gi|262207722|gb|ACY31820.1| proton-translocating NADH-quinone [Comamonas testosteroni CNB-2]
gi|298721270|gb|EFI62212.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Comamonas testosteroni S44]
gi|371452257|gb|EHN65286.1| proton-translocating NADH-quinone [Comamonas testosteroni ATCC
11996]
Length = 491
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/397 (55%), Positives = 308/397 (77%), Gaps = 15/397 (3%)
Query: 205 LSLVGA--------PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
L+L+GA P +GF + + +WI+ FNI+Y LG+DG+S+WF+PLTAF
Sbjct: 33 LALIGALIGFAVTIPLVTGFDTTTANMQFVENALWIERFNIHYHLGVDGISMWFVPLTAF 92
Query: 251 ITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
IT+I+++ S +I +++ +YM+AFLILSGL+IG F +LDGMLFY+FFEATLIP+++IIG
Sbjct: 93 ITVIVVIASWTNITERVNQYMAAFLILSGLMIGVFASLDGMLFYVFFEATLIPMYLIIGI 152
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG N+ YAA KFFLYTLMGSLL L+++IYLY S SF IL WH+L ++ Q +F
Sbjct: 153 WGGPNKIYAAFKFFLYTLMGSLLTLVALIYLYTQSGGSFEILDWHKLPLSGTAQTLIFFA 212
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
FF AFA+K+P++P+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFSLPI PDA++ +
Sbjct: 213 FFAAFAVKVPMFPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEW 272
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
S L+ITLSLI++IY+ ++A+VQ D+KKL+AYSS+AHMGFVTLG FM + I G ++QMI
Sbjct: 273 SGLMITLSLIAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTLGFFMFNNLGISGGLVQMI 332
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
+H +S AMF+ IG LY+++ +R I+ +GG++N +P F+ F ++F++ANC LP T+GF+G
Sbjct: 333 AHGFVSGAMFLCIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLPATAGFVG 392
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
E+M+IL AV++NF IG+ +TALIF AAY+L + K +
Sbjct: 393 EWMVILGAVQYNFWIGLGAATALIFGAAYTLWMYKRV 429
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL+ TA F K FP+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLSGTAQTLIFFAFFAAFAVKVPMFPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + ++ +++ + I ++G++ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSLPIAPDAAHEWSGLMITLSLIAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+S + ++ H F +FL G ++ + H+++I GG+ MP
Sbjct: 315 GFFMFNNLGISG---GLVQMIAHGFVSGAMFLCIG-VLYDRVHSREIAAYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPATAGFVGE 393
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 30/286 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ ++ S L + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLMGSLLTLVALIYLYTQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLS--FKLGISPFHMWVPDVY-----QGASII 713
F ++ + + S A +L+ + K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFEILDWHKLPLSGTAQTLIFFAFFAAFAVKVPMFPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I V A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSLPIAPDAAHEWSGLMITLSLIAVIYVGVVALVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
+AYSS+AHMG + NNL I GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTLGFFMF----NNLGI----SGGLVQMIAHGFVSGAMFLCIGVLYDRV 352
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 353 HSR--EIAAYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMV 396
>gi|384086282|ref|ZP_09997457.1| NADH-quinone oxidoreductase, M subunit [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 493
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/385 (54%), Positives = 294/385 (76%), Gaps = 7/385 (1%)
Query: 211 PFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIK 263
P ++GF + ++ WI NIYY LG+DG+SLWFI LT+F+T+++++ S +++
Sbjct: 48 PLYTGFDTHTAAMQFSERVAWIPSLNIYYHLGVDGISLWFILLTSFLTVLVVISSWRNVQ 107
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
++A++M+AFLI+ G++IG FCALD +LFY+F+EA LIP+F+IIG WGG R YA IKFF
Sbjct: 108 TRVAQFMAAFLIMEGMMIGVFCALDAILFYVFWEAMLIPMFLIIGVWGGPRRVYATIKFF 167
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYT +GS+LML++++YLY+ S SF++L + + QI +FI FF+AFA+KIP+WP+
Sbjct: 168 LYTFLGSVLMLVALLYLYFHSGNSFDLLVYQHTPLGMTAQILIFIAFFVAFAVKIPMWPV 227
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAIMLK+G YG LR SLPI PDAS+ + L+I LSLI+IIY
Sbjct: 228 HTWLPDAHVEAPTAGSVVLAAIMLKMGAYGFLRLSLPIVPDASHKLAWLMILLSLIAIIY 287
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
++L+A+VQ D+KKL+AYSSIAHMGFVTLG F+ ++I+G+IIQM+SH IS+AMF+ IG
Sbjct: 288 VALVAIVQEDMKKLVAYSSIAHMGFVTLGFFVFDSVAIEGSIIQMLSHGFISAAMFLCIG 347
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY++M TR I +GG+ NV+P F+ ++F++ N LPGTSGF+GEFM++L + N
Sbjct: 348 VLYDRMHTRNIKAYGGVANVMPIFAALMMLFAMGNVGLPGTSGFVGEFMVVLGTYQVNPW 407
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
+L +T LI A+Y+L L K IF
Sbjct: 408 YAILAATGLITGASYTLWLFKRAIF 432
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 112/198 (56%), Gaps = 8/198 (4%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFM 86
PL +TA + F+ + K +P+HTWLPD+ +E PT A +++ AA M+ G +
Sbjct: 199 HTPLGMTAQILIFIAFFVAFAVKIPMWPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGAYG 257
Query: 87 ITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
R+S P+ ++ L+ +++ + I ++ L+ I+Q D+K+++AYS+++ +G++T+G
Sbjct: 258 FLRLSLPIVPDASHKLAWLMILLSLIAIIYVALVAIVQEDMKKLVAYSSIAHMGFVTLGF 317
Query: 145 GV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
V A SI +++H F A +FL G ++ + H ++I+ GG+ MPI +
Sbjct: 318 FVFDSVAIEGSIIQMLSHGFISAAMFLCIG-VLYDRMHTRNIKAYGGVANVMPIFAALMM 376
Query: 202 IGLLSLVGAPFFSGFYSK 219
+ + VG P SGF +
Sbjct: 377 LFAMGNVGLPGTSGFVGE 394
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 120/273 (43%), Gaps = 43/273 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
A IK+F+ L S ML + LY +G + F+++ + + A L+ I V
Sbjct: 162 ATIKFFLYTFLGSVLMLVALLYLYFHSG-----NSFDLLVYQHTPLGMTAQILIFIAFFV 216
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+V +
Sbjct: 217 AFAVKIPMWPVHTWLPDAHVEAP--------TAGSVVLAAIMLKMGAYGFLRLSLPIVPD 268
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTS 795
++++L++ ++I + AI Q + K+++AYSSIAHMG + +F ++I+ S
Sbjct: 269 ASHKLAWLMILLSLIAIIYVALVAIVQEDMKKLVAYSSIAHMGFVTLGFFVFDSVAIEGS 328
Query: 796 HNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
++ + +F I ++ + T + + G+ P A
Sbjct: 329 IIQMLSHGFISAAMFLCIGVLYDRM---------------HTRNIKAYGGVANVMPIFAA 373
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+MM+F G P T GF +F + ++
Sbjct: 374 LMMLFAMGNVGLPGTSGFVGEFMVVLGTYQVNP 406
>gi|451812345|ref|YP_007448799.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778247|gb|AGF49195.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 496
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/370 (60%), Positives = 294/370 (79%), Gaps = 2/370 (0%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
++ WI NI Y +GIDG+SL F+ LT+FIT+I+IL + IK +++EYM+AFLILSG
Sbjct: 68 EENYSWISSLNINYHIGIDGISLLFLLLTSFITVIVILAGWESIKNRVSEYMAAFLILSG 127
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L+ G F +LD +LFY+FFE+TLIP++IIIG WGG NR YAA KFFLYTL+GSLLM I+ +
Sbjct: 128 LMNGVFVSLDAILFYVFFESTLIPMYIIIGVWGGPNRFYAAFKFFLYTLLGSLLMFIAFV 187
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YLY +S SF+I +WH++ I+ EQ ++FI F AFA+KIP+WP HTWLPDAHVEAPT G
Sbjct: 188 YLYKMSG-SFDIFTWHKIKISYTEQFFIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGG 246
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
S+ILAAIMLKLG YG LR SLPI PDAS S L+ITLSLI+IIYI IA+VQ D+KKL+
Sbjct: 247 SIILAAIMLKLGAYGFLRLSLPILPDASISLSGLMITLSLIAIIYIGFIAIVQDDMKKLV 306
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG+F+ I I+GAIIQMISH IS+AMF SIG LY++ +R+IS++
Sbjct: 307 AYSSIAHMGFVTLGLFVFNLIGIEGAIIQMISHGFISAAMFFSIGVLYDRAHSRIISDYN 366
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+++V+P F FF+ FS+ANC LP TSGF+GEF++I+ +++++F + + +T+LI SA+Y
Sbjct: 367 GLVSVMPRFITFFVFFSMANCGLPATSGFVGEFLVIMGSMEYSFPVALFAATSLILSASY 426
Query: 579 SLCLSKNIIF 588
SL + K I F
Sbjct: 427 SLWMLKRISF 436
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 99/178 (55%), Gaps = 14/178 (7%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ ++ T F+ K +P HTWLPD+ +E PT S +I AA M+ G
Sbjct: 201 WHKIKISYTEQFFIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGGS-IILAAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R+S P+ ++ +LS +++ + I ++G + I+Q+D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRLSLPILPDASISLSGLMITLSLIAIIYIGFIAIVQDDMKKLVAYSSIAHMGFVTL 319
Query: 143 GL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
GL G+ +I +++H F A +F S G ++ + H++ I + GL MP
Sbjct: 320 GLFVFNLIGIEG---AIIQMISHGFISAAMFFSIG-VLYDRAHSRIISDYNGLVSVMP 373
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 116/262 (44%), Gaps = 40/262 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ +L S M LY ++G+ F++ + I S + I +
Sbjct: 167 AAFKFFLYTLLGSLLMFIAFVYLYKMSGS------FDIFTWHKIKISYTEQFFIFIAFMA 220
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + PFH W+PD + G SII+ ++ KL + + RL + L I+
Sbjct: 221 AFAVKIPMWPFHTWLPDAHVEAPTGGSIILAAIML---KLGAYGFL-RLSLPILPDASIS 276
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNL 799
+++ L++ ++I AI Q + K+++AYSSIAHM GL +F++I I+ + +
Sbjct: 277 LSGLMITLSLIAIIYIGFIAIVQDDMKKLVAYSSIAHMGFVTLGLFVFNLIGIEGAIIQM 336
Query: 800 IIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
I + +F F + +L + + + + R I
Sbjct: 337 ISHGFISAAMF------------FSIGVLYDRAHSRIISDYNGLVSVMPR-----FITFF 379
Query: 860 FMFSLA--GFPPTIGFYAKFFI 879
FS+A G P T GF +F +
Sbjct: 380 VFFSMANCGLPATSGFVGEFLV 401
>gi|221068600|ref|ZP_03544705.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Comamonas testosteroni KF-1]
gi|220713623|gb|EED68991.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Comamonas testosteroni KF-1]
Length = 491
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/397 (55%), Positives = 306/397 (77%), Gaps = 15/397 (3%)
Query: 205 LSLVGA--------PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
L+L+GA P +GF + + +WI+ FNI+Y LG+DG+S+WF+PLTAF
Sbjct: 33 LALIGALIGFAVTIPLITGFDTTTANMQFVENALWIERFNIHYHLGVDGISMWFVPLTAF 92
Query: 251 ITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
IT+I+++ S +I +++ +YM AFLILSGL+IG F A+DGMLFY+FFEATLIP+++IIG
Sbjct: 93 ITVIVVIASWANITERVNQYMGAFLILSGLMIGVFAAMDGMLFYVFFEATLIPMYLIIGI 152
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG NR YAA KFFLYTLMGSLL L+++IYLY S SF IL WH+L ++ Q +F
Sbjct: 153 WGGPNRIYAAFKFFLYTLMGSLLTLVALIYLYTQSGGSFEILDWHKLPLSGTAQTLIFFA 212
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
FF AFA+K+P++P+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFSLPI PDA++ +
Sbjct: 213 FFAAFAVKVPMFPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEW 272
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
S L+ITLSLI++IY+ ++A+VQ D+KKL+AYSS+AHMGFVTLG FM + I G ++QMI
Sbjct: 273 SGLMITLSLIAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTLGFFMFNSLGIAGGLVQMI 332
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
+H +S AMF+ IG LY+++ +R I+ +GG++N +P F+ F ++F++ANC LP T+GF+G
Sbjct: 333 AHGFVSGAMFLCIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLPATAGFVG 392
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
E+M+IL AV++NF I + +TALIF AAY+L + K +
Sbjct: 393 EWMVILGAVQYNFWISLGAATALIFGAAYTLWMYKRV 429
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL+ TA F K FP+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLSGTAQTLIFFAFFAAFAVKVPMFPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + ++ +++ + I ++G++ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSLPIAPDAAHEWSGLMITLSLIAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG++ + ++ H F +FL G ++ + H+++I GG+ MP
Sbjct: 315 GFFMFNSLGIAG---GLVQMIAHGFVSGAMFLCIG-VLYDRVHSREIAAYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPATAGFVGE 393
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ ++ S L + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNRIY---AAFKFFLYTLMGSLLTLVALIYLYTQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLS--FKLGISPFHMWVPDVY-----QGASII 713
F ++ + + S A +L+ + K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFEILDWHKLPLSGTAQTLIFFAFFAAFAVKVPMFPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I V A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSLPIAPDAAHEWSGLMITLSLIAVIYVGVVALVQKDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD--SGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + +FNS GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFMFNSLGIAGGLVQMIAHGFVSGAMFLCIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIAAYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMV 396
>gi|238028131|ref|YP_002912362.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia glumae BGR1]
gi|237877325|gb|ACR29658.1| NADH dehydrogenase subunit M [Burkholderia glumae BGR1]
Length = 497
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/365 (58%), Positives = 290/365 (79%), Gaps = 2/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ FN+ Y LG+DG+S+WF+ LTA IT+I+++ + + I + +++Y++AFLILSG++IG
Sbjct: 70 WIERFNVSYHLGVDGISMWFVVLTALITVIVVVAAWEVITENVSQYLAAFLILSGIMIGV 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A DG+LFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL GSLLML+++IYLY
Sbjct: 130 FSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVALIYLYR- 188
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+F++ W + Q+ LF FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LA
Sbjct: 189 ETHTFDLAVWQGAKLAMTPQLLLFAAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLA 248
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG LRFSLP+ PDAS+Y + ++I LSL+++IYI L+AMVQ D+KKL+AYSSI
Sbjct: 249 AIMLKLGAYGFLRFSLPVTPDASHYLAPVVIALSLVAVIYIGLVAMVQTDMKKLVAYSSI 308
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ + + ++GAI+QMISH +S AMF+ IG LY+++ TR I+++GG++NV
Sbjct: 309 AHMGFVTLGFFIFSPLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHTRNIADYGGVVNV 368
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++F++ANC LPGTSGF+GEFM+IL++VKFNF I LI A Y+L +
Sbjct: 369 MPKFATFALLFAMANCGLPGTSGFVGEFMVILASVKFNFWIAFGAGFTLILGAGYTLWMY 428
Query: 584 KNIIF 588
K + F
Sbjct: 429 KRVYF 433
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W LA+T L F + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 198 WQGAKLAMTPQLLLFAAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 257 YGFLRFSLPVTPDASHYLAPVVIALSLVAVIYIGLVAMVQTDMKKLVAYSSIAHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV +I +++H F +FL G ++ + H ++I + GG+ MP
Sbjct: 317 GFFIFSPLGVEG---AIVQMISHGFVSGAMFLCIG-VLYDRLHTRNIADYGGVVNVMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P SGF +
Sbjct: 373 ATFALLFAMANCGLPGTSGFVGE 395
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 145/348 (41%), Gaps = 74/348 (21%)
Query: 566 VLTS--TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T ++ AA+ + +++N+ L +++SG L ++ L+ +
Sbjct: 91 VLTALITVIVVVAAWEV-ITENVSQYLAAFLILSGIMIGVFSAADGLLFYVFFEATLIPM 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
+ + + N ++ AA K+F+ + S ML + LY T T +L V +
Sbjct: 150 YIIIGVWGGPNRVY---AAFKFFLYTLAGSLLMLVALIYLYRETHTFDLA----VWQGAK 202
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLL------------ 717
+ + L + + K+ + P H W+PD + G S+++ +
Sbjct: 203 LAMTPQLLLFAAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 262
Query: 718 -LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
L TP S + L P+VI L++ ++I + A+ Q + K+++AY
Sbjct: 263 SLPVTPDASHY----------LAPVVIA-------LSLVAVIYIGLVAMVQTDMKKLVAY 305
Query: 777 SSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
SSIAHMG + +FS + ++ + +I +F I ++ L
Sbjct: 306 SSIAHMGFVTLGFFIFSPLGVEGAIVQMISHGFVSGAMFLCIGVLYDRL----------- 354
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+T N D + G+ P A ++F + G P T GF +F +
Sbjct: 355 HTRNIAD----YGGVVNVMPKFATFALLFAMANCGLPGTSGFVGEFMV 398
>gi|74317172|ref|YP_314912.1| NADH dehydrogenase subunit M [Thiobacillus denitrificans ATCC
25259]
gi|74056667|gb|AAZ97107.1| NADH dehydrogenase I chain M [Thiobacillus denitrificans ATCC
25259]
Length = 494
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 288/369 (78%), Gaps = 1/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+KK WI FN++Y LG+DG+S+ I L +F+T+++++ I+ K+A+YM+AFLI+SGL
Sbjct: 66 EKKSWIPAFNVFYHLGVDGISMPLILLNSFVTVLVVIAGWQVIQDKVAQYMAAFLIMSGL 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
I GAF ALDG+LFY+FFE LIP+++I+G WGG NR YAA KFFLYTL+GSLLML+S+IY
Sbjct: 126 INGAFAALDGILFYVFFEGMLIPLYLIVGVWGGPNRVYAAFKFFLYTLLGSLLMLVSLIY 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ S SF+I SW+ ++ Q +F F +AF +K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 186 LYFQSGGSFDIQSWYTTPLSMTAQTLMFFAFLLAFGVKVPMWPVHTWLPDAHVEAPTGGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI LK+G YGL+RF LPI PDA++ ++ +ITLSLI++ YI L+A+VQ D+KKLIA
Sbjct: 246 VVLAAITLKVGAYGLVRFLLPIVPDAAHEYAWFVITLSLIAVAYIGLVALVQADMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ + +G ++QMISH +S+A+F+ IG +Y+++ +R I ++GG
Sbjct: 306 YSSIAHMGFVTLGFFLFNPLGWEGGLVQMISHGFVSAALFLCIGVMYDRLHSRQIKDYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ FF++F++AN LP TSGF+GEFM+I++A + NF + +T LIF AAY+
Sbjct: 366 LVNRMPVFAAFFMLFAMANSGLPATSGFVGEFMVIMAATEVNFWFAFVAATTLIFGAAYT 425
Query: 580 LCLSKNIIF 588
L + K ++F
Sbjct: 426 LWMYKRVVF 434
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 107/199 (53%), Gaps = 6/199 (3%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
WY PL++TA F + K +P+HTWLPD+ +E PT S ++ A T+
Sbjct: 199 WYTTPLSMTAQTLMFFAFLLAFGVKVPMWPVHTWLPDAHVEAPTGGSVVLAAITLKVGAY 258
Query: 85 FMITRMSPLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
++ + P+ + ++ ++ + I ++GL+ ++Q D+K++IAYS+++ +G++T+G
Sbjct: 259 GLVRFLLPIVPDAAHEYAWFVITLSLIAVAYIGLVALVQADMKKLIAYSSIAHMGFVTLG 318
Query: 144 ---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITS 200
+ + +++H F A LFL G ++ + H++ I++ GGL MP+
Sbjct: 319 FFLFNPLGWEGGLVQMISHGFVSAALFLCIG-VMYDRLHSRQIKDYGGLVNRMPVFAAFF 377
Query: 201 LIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 378 MLFAMANSGLPATSGFVGE 396
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 30/277 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITG-TLELQSIFNV 668
L+ L L V + N ++ AA K+F+ +L S ML + LY +G + ++QS +
Sbjct: 146 LIPLYLIVGVWGGPNRVY---AAFKFFLYTLLGSLLMLVSLIYLYFQSGGSFDIQSWYT- 201
Query: 669 IKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFV 728
++ + L ++ K+ + P H W+PD + A +++L+ ++L V
Sbjct: 202 ---TPLSMTAQTLMFFAFLLAFGVKVPMWPVHTWLPDAHVEAPTGGSVVLAA---ITLKV 255
Query: 729 IIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGL 784
Y L ++ LLP+V + + ++ L++ ++ + A+ Q + K++IAYSSIAHMG
Sbjct: 256 GAYGL-VRFLLPIVPDAAHEYAWFVITLSLIAVAYIGLVALVQADMKKLIAYSSIAHMGF 314
Query: 785 MLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI 842
+ +FN + GL +I++ F F I ++ + ++ ++
Sbjct: 315 VTL----------GFFLFNPLGWEGGLVQMISHGFVSAALFLCIGVMYDRLHSR--QIKD 362
Query: 843 FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ GL R P A M+F + +G P T GF +F +
Sbjct: 363 YGGLVNRMPVFAAFFMLFAMANSGLPATSGFVGEFMV 399
>gi|347538451|ref|YP_004845875.1| NADH dehydrogenase (ubiquinone) subunit M [Pseudogulbenkiania sp.
NH8B]
gi|345641628|dbj|BAK75461.1| NADH dehydrogenase (ubiquinone), M subunit [Pseudogulbenkiania sp.
NH8B]
Length = 497
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/409 (51%), Positives = 307/409 (75%), Gaps = 14/409 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ +L G L+ LV P ++GF ++ + WI NI Y LG+DG+S+ FI
Sbjct: 30 PLARWLALAGSLAGFLVSLPLYTGFNDLNGGMQFEEMRPWIQALNINYHLGVDGISMLFI 89
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L +F TL+++L + I+K++A+YM+AFLI+SGLI G+F +LD MLFY+FFEA LIP++
Sbjct: 90 VLNSFTTLMVVLAGWEVIEKRVAQYMAAFLIMSGLINGSFASLDAMLFYVFFEAMLIPMY 149
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
+IIG WGG R YA++KFFLYTL+GSLLML++ IY+Y+ + K+F IL++H + I Q+
Sbjct: 150 LIIGVWGGPRRVYASVKFFLYTLLGSLLMLVAFIYMYFHAGKTFEILAFHDMKIALSVQM 209
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
LF+ FF++FA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF+LPI PD
Sbjct: 210 LLFVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFALPILPD 269
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKI 479
AS + +++ LSL++++YI L+A+VQ D+KKL+AYSSI+HMGFVTLG+FM + +
Sbjct: 270 ASRELAWVMVALSLVAVVYIGLVALVQSDMKKLVAYSSISHMGFVTLGMFMFLGTNMNQW 329
Query: 480 SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANC 539
+++GA++QM+SH +S+AMF IG +Y+++ +R I+++GG+ N +P F+ F ++F +AN
Sbjct: 330 AVEGALVQMVSHGFVSAAMFFCIGVMYDRLHSRNIADYGGVANKMPIFAAFMMLFGMANS 389
Query: 540 SLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+IL AV+ NF L +T LIF AAY+L + K +IF
Sbjct: 390 GLPATSGFVGEFMVILGAVQVNFWYAALAATTLIFGAAYTLWMYKRVIF 438
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 111/203 (54%), Gaps = 11/203 (5%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+D +A++ + F+ + K +P+HTWLPD+ +E PT S ++ A T+
Sbjct: 199 HDMKIALSVQMLLFVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYG 258
Query: 86 MITRMSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG- 143
+ P+ ++ L+ +++ + + ++GL+ ++Q+D+K+++AYS++S +G++T+G
Sbjct: 259 FLRFALPILPDASRELAWVMVALSLVAVVYIGLVALVQSDMKKLVAYSSISHMGFVTLGM 318
Query: 144 ---LGVS----AYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
LG + A ++ +++H F A +F G ++ + H+++I + GG+ MPI
Sbjct: 319 FMFLGTNMNQWAVEGALVQMVSHGFVSAAMFFCIG-VMYDRLHSRNIADYGGVANKMPIF 377
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 378 AAFMMLFGMANSGLPATSGFVGE 400
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 127/257 (49%), Gaps = 24/257 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML +Y G F ++ +++ ++ LL + L
Sbjct: 163 ASVKFFLYTLLGSLLMLVAFIYMYFHAG-----KTFEILAFHDMKIALSVQMLLFVAFFL 217
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQK 747
SF K+ + P H W+PD + A +++L+ T KL + ++ LP++ + +
Sbjct: 218 SFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYG-----FLRFALPILPDASR 272
Query: 748 ----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIF 802
+++ L++ +++ + A+ Q + K+++AYSSI+HMG + + + + T+ N
Sbjct: 273 ELAWVMVALSLVAVVYIGLVALVQSDMKKLVAYSSISHMGFVTLGMFMFLGTNMNQW--- 329
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ + L ++++ F F I ++ + ++ + + G+ + P A MM+F
Sbjct: 330 -AVEGALVQMVSHGFVSAAMFFCIGVMYDRLHSR--NIADYGGVANKMPIFAAFMMLFGM 386
Query: 863 SLAGFPPTIGFYAKFFI 879
+ +G P T GF +F +
Sbjct: 387 ANSGLPATSGFVGEFMV 403
>gi|224824811|ref|ZP_03697918.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Pseudogulbenkiania ferrooxidans 2002]
gi|224603304|gb|EEG09480.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Pseudogulbenkiania ferrooxidans 2002]
Length = 497
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/409 (51%), Positives = 307/409 (75%), Gaps = 14/409 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ +L G L+ LV P ++GF ++ + WI NI Y LG+DG+S+ FI
Sbjct: 30 PLARWLALAGSLAGFLVSLPLYTGFNDLNGGMQFEEMRPWIQALNINYHLGVDGISMLFI 89
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L +F TL+++L + I+K++A+YM+AFLI+SGLI G+F +LD MLFY+FFEA LIP++
Sbjct: 90 VLNSFTTLMVVLAGWEVIEKRVAQYMAAFLIMSGLINGSFASLDAMLFYVFFEAMLIPMY 149
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
+IIG WGG R YA++KFFLYTL+GSLLML++ IY+Y+ + K+F IL++H + I Q+
Sbjct: 150 LIIGVWGGPRRVYASVKFFLYTLLGSLLMLVAFIYMYFHAGKTFEILAFHDMKIALSVQM 209
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
LF+ FF++FA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF+LPI PD
Sbjct: 210 LLFVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFALPILPD 269
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKI 479
AS + +++ LSL++++YI L+A+VQ D+KKL+AYSSI+HMGFVTLG+FM + +
Sbjct: 270 ASRELAWVMVALSLVAVVYIGLVALVQSDMKKLVAYSSISHMGFVTLGMFMFLGTNMNQW 329
Query: 480 SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANC 539
+++GA++QM+SH +S+AMF IG +Y+++ +R I+++GG+ N +P F+ F ++F +AN
Sbjct: 330 AVEGALVQMVSHGFVSAAMFFCIGVMYDRLHSRNIADYGGVANKMPIFAAFMMLFGMANS 389
Query: 540 SLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+IL AV+ NF L +T LIF AAY+L + K +IF
Sbjct: 390 GLPATSGFVGEFMVILGAVQVNFWYAALAATTLIFGAAYTLWMYKRVIF 438
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 111/203 (54%), Gaps = 11/203 (5%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+D +A++ + F+ + K +P+HTWLPD+ +E PT S ++ A T+
Sbjct: 199 HDMKIALSVQMLLFVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYG 258
Query: 86 MITRMSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG- 143
+ P+ ++ L+ +++ + + ++GL+ ++Q+D+K+++AYS++S +G++T+G
Sbjct: 259 FLRFALPILPDASRELAWVMVALSLVAVVYIGLVALVQSDMKKLVAYSSISHMGFVTLGM 318
Query: 144 ---LGVS----AYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
LG + A ++ +++H F A +F G ++ + H+++I + GG+ MPI
Sbjct: 319 FMFLGTNMNQWAVEGALVQMVSHGFVSAAMFFCIG-VMYDRLHSRNIADYGGVANKMPIF 377
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 378 AAFMMLFGMANSGLPATSGFVGE 400
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 127/257 (49%), Gaps = 24/257 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML +Y G F ++ +++ ++ LL + L
Sbjct: 163 ASVKFFLYTLLGSLLMLVAFIYMYFHAG-----KTFEILAFHDMKIALSVQMLLFVAFFL 217
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQK 747
SF K+ + P H W+PD + A +++L+ T KL + ++ LP++ + +
Sbjct: 218 SFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYG-----FLRFALPILPDASR 272
Query: 748 ----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIF 802
+++ L++ +++ + A+ Q + K+++AYSSI+HMG + + + + T+ N
Sbjct: 273 ELAWVMVALSLVAVVYIGLVALVQSDMKKLVAYSSISHMGFVTLGMFMFLGTNMNQW--- 329
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ + L ++++ F F I ++ + ++ + + G+ + P A MM+F
Sbjct: 330 -AVEGALVQMVSHGFVSAAMFFCIGVMYDRLHSR--NIADYGGVANKMPIFAAFMMLFGM 386
Query: 863 SLAGFPPTIGFYAKFFI 879
+ +G P T GF +F +
Sbjct: 387 ANSGLPATSGFVGEFMV 403
>gi|375106888|ref|ZP_09753149.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderiales bacterium JOSHI_001]
gi|374667619|gb|EHR72404.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderiales bacterium JOSHI_001]
Length = 491
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/407 (53%), Positives = 304/407 (74%), Gaps = 4/407 (0%)
Query: 185 NMGGLYKYMPI--TCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSL 242
N GL +++ + + L+ L + G SG + WI+ F + Y LG+DG+S+
Sbjct: 25 NNAGLVRWVALLGAMASFLVTLPLITGFDLGSGALQFQENLPWIERFKVSYHLGVDGISV 84
Query: 243 WFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLI 301
WF+ LTAFIT+++++ + I + +A YM +FLILSGL++G F A DG+LFY+FFEATLI
Sbjct: 85 WFVLLTAFITVVVVIAGWEVITEGVAMYMGSFLILSGLLVGVFAAADGLLFYVFFEATLI 144
Query: 302 PIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKI 361
P+++IIG WGG R YAA KFFLYTL GSLLML+++ YLYY SF+I +WH++ +T
Sbjct: 145 PMYLIIGIWGGPKRVYAAFKFFLYTLAGSLLMLVALTYLYY-QTGSFSIAAWHKVPLTPG 203
Query: 362 EQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPI 421
Q LF FF AF++K+P+WP+HTWLPDAHVEAPT GSV+LAAIMLKLG YG LRFS+PI
Sbjct: 204 AQALLFFAFFAAFSVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSMPI 263
Query: 422 FPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISI 481
PDAS ++ LI+ LSLI++IYI L+A+VQ D+KKL+AYSSIAHMGFVTLG F+ ++ +
Sbjct: 264 APDASREYAWLIVALSLIAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFIFNELGV 323
Query: 482 QGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSL 541
GA++QM+SH +S AMF+ IG LY+++ +R I+++GG++N +P F + F++ANC L
Sbjct: 324 SGALVQMVSHGFVSGAMFLCIGVLYDRVHSRQIADYGGVVNTMPKFVALAVFFAMANCGL 383
Query: 542 PGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
PGT+GF+GE+M+IL VKFNF +G L +TAL+F AAY+L + K + F
Sbjct: 384 PGTAGFVGEWMVILGTVKFNFWLGALAATALVFGAAYTLWMVKRVYF 430
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVT 81
I W+ PL A F K +P+HTWLPD+ +E PT S ++ AA M+
Sbjct: 192 IAAWHKVPLTPGAQALLFFAFFAAFSVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLK 250
Query: 82 AGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S +I+ + I ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 251 LGAYGFLRFSMPIAPDASREYAWLIVALSLIAVIYIGLVALVQQDMKKLVAYSSIAHMGF 310
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LGVS ++ +++H F +FL G ++ + H++ I + GG+ M
Sbjct: 311 VTLGFFIFNELGVSG---ALVQMVSHGFVSGAMFLCIG-VLYDRVHSRQIADYGGVVNTM 366
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P ++ ++ G P +GF +
Sbjct: 367 PKFVALAVFFAMANCGLPGTAGFVGE 392
Score = 47.0 bits (110), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 26/255 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S ML ++ LY TG+ + + V + AL
Sbjct: 161 AAFKFFLYTLAGSLLMLVALTYLYYQTGSFSIAAWHKV----PLTPGAQALLFFAFFAAF 216
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
S K+ + P H W+PD + G S+++ ++ KL + + R + +
Sbjct: 217 SVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIML---KLGAYGFL-RFSMPIAPDASREYA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS-- 804
+++ L++ ++I + A+ Q + K+++AYSSIAHMG + IFN
Sbjct: 273 WLIVALSLIAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTL----------GFFIFNELG 322
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
L ++++ F F I +L + ++ ++ + G+ P + + F +
Sbjct: 323 VSGALVQMVSHGFVSGAMFLCIGVLYDRVHSR--QIADYGGVVNTMPKFVALAVFFAMAN 380
Query: 865 AGFPPTIGFYAKFFI 879
G P T GF ++ +
Sbjct: 381 CGLPGTAGFVGEWMV 395
>gi|255019919|ref|ZP_05291994.1| NADH-ubiquinone oxidoreductase chain M [Acidithiobacillus caldus
ATCC 51756]
gi|340783292|ref|YP_004749899.1| NADH-ubiquinone oxidoreductase subunit M [Acidithiobacillus caldus
SM-1]
gi|254970699|gb|EET28186.1| NADH-ubiquinone oxidoreductase chain M [Acidithiobacillus caldus
ATCC 51756]
gi|340557443|gb|AEK59197.1| NADH-ubiquinone oxidoreductase chain M [Acidithiobacillus caldus
SM-1]
Length = 494
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 289/369 (78%), Gaps = 1/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
++ WI NI Y LG+DG+SLWF+ LT+F+T+++++ S +++++LA+++ AFLI+ GL
Sbjct: 65 ERIPWIPALNIDYHLGVDGISLWFVLLTSFLTILVVISSWTNVERRLAQFLGAFLIMDGL 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY F+EATLIP+F+IIG WGG R YA IKFFLYT +GS+LML++++Y
Sbjct: 125 MIGVFCALDAILFYFFWEATLIPMFLIIGVWGGPRRVYATIKFFLYTFLGSVLMLVALLY 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
L++ S SFN+L++ + + QIW+F+ FF+AFA+KIP+WP+HTWLPDAHVEAPT GS
Sbjct: 185 LHFHSGGSFNLLTFQNTPLGMVAQIWIFLAFFLAFAVKIPMWPVHTWLPDAHVEAPTAGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAA+MLK+G YG LR SLPI PDAS++ + L++ LSLI+I+YI+L+A+VQ D+KKL+A
Sbjct: 245 VILAAVMLKMGAYGFLRLSLPITPDASHHLAWLMVLLSLIAIVYIALVAIVQQDMKKLVA 304
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ +++G IIQM+SH IS+AMF+ IG LY++M TR I +GG
Sbjct: 305 YSSIAHMGFVTLGFFVFDATAMEGGIIQMLSHGFISAAMFLCIGVLYDRMHTRDIHAYGG 364
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ NV+P F+ F ++F++ N LPGTSGF+GEFM++L + ++ +T LI A Y+
Sbjct: 365 VANVMPIFASFMMLFAMGNVGLPGTSGFVGEFMVVLGTYQVQPWAAIVAATGLITGAGYT 424
Query: 580 LCLSKNIIF 588
L L K +IF
Sbjct: 425 LWLFKRVIF 433
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFM 86
+ PL + A + FL + K +P+HTWLPD+ +E PT A ++I AA M+ G +
Sbjct: 200 NTPLGMVAQIWIFLAFFLAFAVKIPMWPVHTWLPDAHVEAPT-AGSVILAAVMLKMGAYG 258
Query: 87 ITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
R+S P+ ++ L+ +++ + I ++ L+ I+Q D+K+++AYS+++ +G++T+G
Sbjct: 259 FLRLSLPITPDASHHLAWLMVLLSLIAIVYIALVAIVQQDMKKLVAYSSIAHMGFVTLGF 318
Query: 145 GV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
V +A I +++H F A +FL G ++ + H +DI GG+ MPI +
Sbjct: 319 FVFDATAMEGGIIQMLSHGFISAAMFLCIG-VLYDRMHTRDIHAYGGVANVMPIFASFMM 377
Query: 202 IGLLSLVGAPFFSGFYSK 219
+ + VG P SGF +
Sbjct: 378 LFAMGNVGLPGTSGFVGE 395
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 25/264 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+F+ L S ML + L+ +G FN++ N ++A + + L
Sbjct: 163 ATIKFFLYTFLGSVLMLVALLYLHFHSG-----GSFNLLTFQNTPLGMVAQIWIFLAFFL 217
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK- 747
+F K+ + P H W+PD + A +++L+ + L + Y L + LP+ +
Sbjct: 218 AFAVKIPMWPVHTWLPDAHVEAPTAGSVILA---AVMLKMGAYGFL-RLSLPITPDASHH 273
Query: 748 ---ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
++++L++ +++ + AI Q + K+++AYSSIAHMG + + +
Sbjct: 274 LAWLMVLLSLIAIVYIALVAIVQQDMKKLVAYSSIAHMGFVTLGFFVFDAT--------A 325
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ G+ ++++ F F I +L + T ++ + G+ P A MM+F
Sbjct: 326 MEGGIIQMLSHGFISAAMFLCIGVLYDRM--HTRDIHAYGGVANVMPIFASFMMLFAMGN 383
Query: 865 AGFPPTIGFYAKFFIFEKIFETQK 888
G P T GF +F + ++ Q
Sbjct: 384 VGLPGTSGFVGEFMVVLGTYQVQP 407
>gi|260223132|emb|CBA33390.1| NADH-quinone oxidoreductase subunit M [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 491
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/363 (58%), Positives = 290/363 (79%), Gaps = 1/363 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ FN+ Y LG+DG+S WF+PLTAFIT+I+++ + + I +++ +YM AFLILSGL+IG
Sbjct: 67 WIERFNVNYHLGLDGISFWFVPLTAFITVIVVIAAWEVITQRVNQYMGAFLILSGLMIGV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALDGMLFY+FFEATLIP+++IIG WGG N+ YAA KFFLYTL+GSLLMLI++I+LY
Sbjct: 127 FSALDGMLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLIALIFLYTQ 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF + WH L + + Q LF FF AFA+K+P+WP+HTWLPD HVEAPT GS +LA
Sbjct: 187 SGGSFELAKWHALPLGQTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLKLG YG LRFS+PI PDA++ + ++ LSLI+++Y+ L+AMVQ D+KKL+AYSS+
Sbjct: 247 AIMLKLGAYGFLRFSMPIAPDAAHAYGGFMVALSLIAVVYVGLVAMVQQDMKKLVAYSSV 306
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG F+ + + G ++QMI+H +S AMF+SIG LY+++ +R I+++GG++N
Sbjct: 307 AHMGFVTLGFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYDRVHSREIASYGGVVNT 366
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++F++ANC LPGT+GF+GE+M+IL AVKFNF IG ++ALIF AAY+L +
Sbjct: 367 MPKFAAFALLFAMANCGLPGTAGFVGEWMVILGAVKFNFWIGFAAASALIFGAAYTLWMF 426
Query: 584 KNI 586
K +
Sbjct: 427 KRV 429
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL TA F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHALPLGQTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + ++ ++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDAAHAYGGFMVALSLIAVVYVGLVAMVQQDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGVS + ++ H F +FLS G ++ + H+++I + GG+ MP
Sbjct: 315 GFFIFNDLGVSG---GLVQMIAHGFVSGAMFLSIG-VLYDRVHSREIASYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPGTAGFVGE 393
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLIALIFLYTQSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F + K + + A +LL +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFELAKWHALPLGQTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + + ++ L++ +++ + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDAAHAYGGFMVALSLIAVVYVGLVAMVQQDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIASYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMV 396
>gi|217970168|ref|YP_002355402.1| NADH dehydrogenase subunit M [Thauera sp. MZ1T]
gi|217507495|gb|ACK54506.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thauera
sp. MZ1T]
Length = 493
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/385 (55%), Positives = 296/385 (76%), Gaps = 7/385 (1%)
Query: 211 PFFSGFYSKDKK------KIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P ++GF + W+ FNI Y LG+DG+S+ F+ L AFIT+I++ I+
Sbjct: 50 PLYTGFDVGTSAMQFVELQSWVPRFNINYHLGVDGISVLFVLLNAFITIIVVAAGWQVIQ 109
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
K+A+YM+AFLI+SGL+ G F ALD +LFY+FFEA+LIP+++IIG WGG+NR YAAIKFF
Sbjct: 110 TKVAQYMAAFLIMSGLMNGIFSALDAVLFYVFFEASLIPLYLIIGIWGGANRVYAAIKFF 169
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYTL GSLLMLI+++YL+ S SF+IL WHQL + QI +F+ F IAF +K+P+WP+
Sbjct: 170 LYTLFGSLLMLIALLYLFMQSGGSFSILDWHQLPLPIEPQILIFLAFLIAFGVKVPMWPV 229
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSV+LAAI LKLG YG LRFSLPI PDA+ + L+ITLSLI+++Y
Sbjct: 230 HTWLPDAHVEAPTGGSVVLAAIALKLGAYGFLRFSLPIVPDAANELAPLVITLSLIAVVY 289
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
I +A+VQ D+KKL+AYSSI+HMGFVTLG FM + ++GA++QMISH +S AMF+ IG
Sbjct: 290 IGFVALVQADMKKLVAYSSISHMGFVTLGFFMFNSLGVEGALVQMISHGFVSGAMFLCIG 349
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY+++ +R I+++GG+++ +P F+ FF++F++AN LP TSGF+GEFM++L AV++NF
Sbjct: 350 VLYDRLHSRQIADYGGVVHTMPKFAAFFMLFTMANSGLPATSGFVGEFMVVLGAVQYNFW 409
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
IG + +T LI AAYSL + K ++F
Sbjct: 410 IGFVAATTLILGAAYSLWMYKRVVF 434
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL I + FL I K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 199 WHQLPLPIEPQILIFLAFLIAFGVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIALKLGA 257
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + +N +++ + I ++G + ++Q D+K+++AYS++S +G++T+
Sbjct: 258 YGFLRFSLPIVPDAANELAPLVITLSLIAVVYIGFVALVQADMKKLVAYSSISHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGV ++ +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 318 GFFMFNSLGVEG---ALVQMISHGFVSGAMFLCIG-VLYDRLHSRQIADYGGVVHTMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 374 AAFFMLFTMANSGLPATSGFVGE 396
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 42/292 (14%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ L L + I N ++ AAIK+F+ + L+G ++ L
Sbjct: 137 LFYVFFEASLIPLYLIIGIWGGANRVY---AAIKFFL-------YTLFGSLLMLIALLYL 186
Query: 661 ELQS--IFNVIKLNNINCSVLA--LSLLLIIVGLSFKLGISPFHMWVPDVY----QGASI 712
+QS F+++ + + + L L ++ K+ + P H W+PD + G S+
Sbjct: 187 FMQSGGSFSILDWHQLPLPIEPQILIFLAFLIAFGVKVPMWPVHTWLPDAHVEAPTGGSV 246
Query: 713 I---ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYN 769
+ I L L L + I L PLVI L++ +++ A+ Q +
Sbjct: 247 VLAAIALKLGAYGFLRFSLPIVPDAANELAPLVIT-------LSLIAVVYIGFVALVQAD 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVII 827
K+++AYSSI+HMG + +FNS + L +I++ F F I
Sbjct: 300 MKKLVAYSSISHMGFVTL----------GFFMFNSLGVEGALVQMISHGFVSGAMFLCIG 349
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+L + ++ ++ + G+ P A M+F + +G P T GF +F +
Sbjct: 350 VLYDRLHSR--QIADYGGVVHTMPKFAAFFMLFTMANSGLPATSGFVGEFMV 399
>gi|119897699|ref|YP_932912.1| NADH dehydrogenase subunit M [Azoarcus sp. BH72]
gi|119670112|emb|CAL94025.1| putative NADH-ubiquinone oxidoreductase, chain M [Azoarcus sp.
BH72]
Length = 493
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/404 (53%), Positives = 306/404 (75%), Gaps = 9/404 (2%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGFYSKDKK------KIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +L+ ++ +V P ++GF W+ FNI Y LG+DG+S+ F+
Sbjct: 31 PMARVLALLASIAGFVVTLPLYTGFDVSSAAMQFVEIAPWVPRFNINYHLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFIT+++++ I++K+A+YM+AFLI+SGL+ G F ALDG+LFY+FFEA+LIP++
Sbjct: 91 LLNAFITIMVVIAGWQVIEEKVAQYMAAFLIMSGLMNGIFSALDGILFYVFFEASLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
++IG WGG NR YAAIKFFLYTL+GSLLMLI+++YLY + SF+IL WHQL + Q
Sbjct: 151 LVIGIWGGPNRVYAAIKFFLYTLLGSLLMLIALLYLYMEAGGSFSILDWHQLPLAIEPQT 210
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
+F F IAF +K+P+WP+HTWLPDAHVEAPT GSV+LAAI LKLG YG LRFSLPI PD
Sbjct: 211 LIFFAFLIAFGVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIGLKLGAYGFLRFSLPILPD 270
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ + ++ITLSLI+++YI +A+VQ D+KKL+AYSSI+HMGFVTLG FM ++++GA
Sbjct: 271 AAQQLAPVVITLSLIAVVYIGFVALVQADMKKLVAYSSISHMGFVTLGFFMFNPLAVEGA 330
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
++QMISH +S AMF+ IG LY++M +R I+++GG+++ +P F+ FF++F++AN LP T
Sbjct: 331 LVQMISHGFVSGAMFLCIGVLYDRMHSRQIADYGGVVHSMPKFAAFFMLFAMANAGLPAT 390
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM++L AV++NF I L +T LI AAY+L + K ++F
Sbjct: 391 SGFVGEFMVVLGAVQYNFWIAFLAATTLILGAAYTLWMYKRVVF 434
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 104/200 (52%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PLAI F I K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 199 WHQLPLAIEPQTLIFFAFLIAFGVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIGLKLGA 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + L+ +++ + I ++G + ++Q D+K+++AYS++S +G++T+
Sbjct: 258 YGFLRFSLPILPDAAQQLAPVVITLSLIAVVYIGFVALVQADMKKLVAYSSISHMGFVTL 317
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G A ++ +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 318 GFFMFNPLAVEGALVQMISHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVVHSMPKFAAF 376
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 377 FMLFAMANAGLPATSGFVGE 396
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ L L + I N ++ AAIK+F+ +L S ML + LY +
Sbjct: 137 LFYVFFEASLIPLYLVIGIWGGPNRVY---AAIKFFLYTLLGSLLMLIALLYLY-----M 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVY----QGASII- 713
E F+++ + + ++ +L+ ++ K+ + P H W+PD + G S++
Sbjct: 189 EAGGSFSILDWHQLPLAIEPQTLIFFAFLIAFGVKVPMWPVHTWLPDAHVEAPTGGSVVL 248
Query: 714 --ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFK 771
I L L L + I + L P+VI L++ +++ A+ Q + K
Sbjct: 249 AAIGLKLGAYGFLRFSLPILPDAAQQLAPVVIT-------LSLIAVVYIGFVALVQADMK 301
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILL 829
+++AYSSI+HMG + +FN + + L +I++ F F I +L
Sbjct: 302 KLVAYSSISHMGFVTL----------GFFMFNPLAVEGALVQMISHGFVSGAMFLCIGVL 351
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ ++ ++ + G+ P A M+F + AG P T GF +F +
Sbjct: 352 YDRMHSR--QIADYGGVVHSMPKFAAFFMLFAMANAGLPATSGFVGEFMV 399
>gi|237746739|ref|ZP_04577219.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes
HOxBLS]
gi|229378090|gb|EEO28181.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes
HOxBLS]
Length = 497
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 285/369 (77%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI F + Y LG+DG+S+WF+ LTA ITLI++L I+ ++A+YM AFLILSGL
Sbjct: 71 ERHSWIRLFRVEYALGVDGISMWFVLLTALITLIVVLAGWKVIQTQVAQYMGAFLILSGL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F DG+LFY+FFEATLIP+F+IIG WGG R YAA KFFLYT GSL MLI+++Y
Sbjct: 131 MIGVFSTFDGLLFYVFFEATLIPMFVIIGIWGGERRVYAAFKFFLYTFFGSLPMLIAILY 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY +N SFNI W++ + QIWLFI F AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LYLQTN-SFNIFVWYKAPLPLYVQIWLFIAFLTAFAVKVPMWPVHTWLPDAHVEAPTGGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLKLG YG +RFSLPI PDAS Y + L+I LSL+++ YI L+A+VQ D+KKLIA
Sbjct: 250 VILAAIMLKLGAYGFIRFSLPILPDASRYLAWLMIVLSLVAVTYIGLVALVQKDMKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVTLG F+ I++ GA++QMISH +S+AMF+ +G LY++M TR I ++GG
Sbjct: 310 YSSIAHMGFVTLGFFLFENITVDGALVQMISHGFVSAAMFLCVGVLYDRMHTRHIGDYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+++V+P F+ FF++F+ ANC LPGTSGF+GE M+IL AV N + + + ALI A+Y+
Sbjct: 370 VVHVMPRFAAFFVLFAFANCGLPGTSGFVGEVMVILGAVSVNVWVAAVGALALILGASYT 429
Query: 580 LCLSKNIIF 588
L + K +++
Sbjct: 430 LWMIKRVLY 438
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
WY PL + + F+ K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 203 WYKAPLPLYVQIWLFIAFLTAFAVKVPMWPVHTWLPDAHVEAPTGGSVIL-AAIMLKLGA 261
Query: 85 FMITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L+ ++ + ++ A ++GL+ ++Q D+K++IAYS+++ +G++T+
Sbjct: 262 YGFIRFSLPILPDASRYLAWLMIVLSLVAVTYIGLVALVQKDMKKLIAYSSIAHMGFVTL 321
Query: 143 GLGV-SAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + TV ++ +++H F A +FL G ++ + H + I + GG+ MP
Sbjct: 322 GFFLFENITVDGALVQMISHGFVSAAMFLCVG-VLYDRMHTRHIGDYGGVVHVMPRFAAF 380
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ + G P SGF +
Sbjct: 381 FVLFAFANCGLPGTSGFVGE 400
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 69/137 (50%), Gaps = 21/137 (15%)
Query: 687 IVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV 742
+ + K+ + P H W+PD + G S+I+ ++ KL + I+ LP++
Sbjct: 221 LTAFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAIML---KLGAYG-----FIRFSLPIL 272
Query: 743 INWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIK 793
+ + ++++L++ ++ + A+ Q + K++IAYSSIAHMG + LF I++
Sbjct: 273 PDASRYLAWLMIVLSLVAVTYIGLVALVQKDMKKLIAYSSIAHMGFVTLGFFLFENITVD 332
Query: 794 TSHNNLIIFNSCDSGLF 810
+ +I + +F
Sbjct: 333 GALVQMISHGFVSAAMF 349
>gi|114330937|ref|YP_747159.1| NADH dehydrogenase subunit M [Nitrosomonas eutropha C91]
gi|114307951|gb|ABI59194.1| NADH dehydrogenase subunit M [Nitrosomonas eutropha C91]
Length = 493
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/389 (53%), Positives = 297/389 (76%), Gaps = 7/389 (1%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P +SGF + ++ +W + N+YY+LG+DG+S+ I L +F T ++++
Sbjct: 46 LVTLPLYSGFDTSMGSMQFIERNVWFERLNVYYYLGVDGISMPLILLNSFTTPLVVIAGW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I++K+++YM AFLI+SG++ G F +LD +LFY F+EA+L+P+FIIIG WGG NR YAA
Sbjct: 106 EVIREKVSQYMGAFLIMSGVLNGVFASLDAILFYSFWEASLVPMFIIIGVWGGPNRIYAA 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
+KFFLYT +GSLLML+++IYLY S SF+IL +H L I QI +FI F +AFA+K+P
Sbjct: 166 LKFFLYTFLGSLLMLVALIYLYQASGGSFSILDYHHLPIPMAAQILIFIGFMVAFAVKVP 225
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GSV+LAAI+LKLG YG LRFSLPI PDAS+ S ++I LSLI
Sbjct: 226 MWPVHTWLPDAHVEAPTGGSVVLAAILLKLGGYGFLRFSLPITPDASHELSWILIALSLI 285
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+I+YI ++A++Q D+KKLIAYSS++HMGFVTLG F+ I I+GA++QMISH IS A+F
Sbjct: 286 AIVYIGIVALMQRDMKKLIAYSSVSHMGFVTLGFFLFNPIGIEGAMVQMISHGFISGALF 345
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ +G LY+++ TR+I+++GG++N +P F+ F++F++AN LPGTSGF+GEFM+I+ +++
Sbjct: 346 LCVGVLYDRLHTRMIADYGGVVNKMPVFAALFMLFAMANSGLPGTSGFVGEFMVIMGSME 405
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
NF + LI A+YSL L K ++F
Sbjct: 406 VNFWYAFFAALTLILGASYSLWLYKKVVF 434
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
++ P+ + A + F+ + K +P+HTWLPD+ +E PT S ++ AA ++ G
Sbjct: 199 YHHLPIPMAAQILIFIGFMVAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAILLKLGG 257
Query: 85 FMITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS IL + I ++G++ ++Q D+K++IAYS++S +G++T+
Sbjct: 258 YGFLRFSLPITPDASHELSWILIALSLIAIVYIGIVALMQRDMKKLIAYSSVSHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ V +++H F LFL G ++ + H + I + GG+ MP+
Sbjct: 318 GFFLFNPIGIEGAMV---QMISHGFISGALFLCVG-VLYDRLHTRMIADYGGVVNKMPVF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 374 AALFMLFAMANSGLPGTSGFVGE 396
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 38/286 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA+K+F+ L S ML + LY +G F+++ +++ + A L+ I +V
Sbjct: 164 AALKFFLYTFLGSLLMLVALIYLYQASG-----GSFSILDYHHLPIPMAAQILIFIGFMV 218
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVII-YRLLIKCLLPLVI 743
+ K+ + P H W+PD + G S+++ +L KL + + + L I +
Sbjct: 219 AFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAILL---KLGGYGFLRFSLPITPDASHEL 275
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTSHNN 798
+W IL+ L++ +++ + A+ Q + K++IAYSS++HMG + LF+ I I+ +
Sbjct: 276 SW--ILIALSLIAIVYIGIVALMQRDMKKLIAYSSVSHMGFVTLGFFLFNPIGIEGAMVQ 333
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+I LF + ++ L T + + G+ + P A + M
Sbjct: 334 MISHGFISGALFLCVGVLYDRL---------------HTRMIADYGGVVNKMPVFAALFM 378
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F + +G P T GF +F + E W + ++GA
Sbjct: 379 LFAMANSGLPGTSGFVGEFMVIMGSMEVN-FWYAFFAALTLILGAS 423
>gi|56478188|ref|YP_159777.1| NADH dehydrogenase subunit M [Aromatoleum aromaticum EbN1]
gi|56314231|emb|CAI08876.1| NADH dehydrogenase I, chain M [Aromatoleum aromaticum EbN1]
Length = 493
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/401 (55%), Positives = 305/401 (76%), Gaps = 13/401 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI FNI Y LG+DG+S+ FI L AFIT+++++ I++K+A+YM+AFLI+SGL+ G
Sbjct: 70 WIPRFNINYHLGVDGISVLFILLNAFITIVVVIAGWQVIREKVAQYMAAFLIMSGLMNGI 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY FFEA+LIP++++IG WGG+NR YAAIKFFLYTL+GSLLML++++YL+
Sbjct: 130 FSALDAILFYTFFEASLIPLYLVIGIWGGTNRVYAAIKFFLYTLLGSLLMLVALLYLFME 189
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SFNIL WHQL + Q +F F IAFA+K+P+WP+HTWLPDAHVEAPT GSV+LA
Sbjct: 190 AGGSFNILDWHQLPLGMGPQTLIFWAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LKLG YG LRFSLPI PDA+ + ++I LSLI++IYI +A+VQ D+KKL+AYSSI
Sbjct: 250 AIALKLGAYGFLRFSLPIVPDAAQAMAPMMIALSLIAVIYIGFVAIVQTDMKKLVAYSSI 309
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLG FM + ++GA++QM+SH +S AMF+ IG LY++M TR I+++GG++ V
Sbjct: 310 AHMGFVTLGFFMFNTLGLEGALVQMVSHGFVSGAMFLCIGVLYDRMHTRNIADYGGVVKV 369
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ FF++FS+AN LPGTSGF+GEFM++L AV+FNF + + LI AAY+L +
Sbjct: 370 MPKFAAFFMLFSMANAGLPGTSGFVGEFMVVLGAVQFNFWVAFGAAITLILGAAYTLWMY 429
Query: 584 KNIIF-VLG-----QMIMISGNNLLSIYLGLELMSLTLCVL 618
K ++F V+G Q+ I+G +LG+ L LCVL
Sbjct: 430 KRVMFGVVGNSHVAQLNDINGREF--AFLGV----LALCVL 464
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ PL + F I K +P+HTWLPD+ +E PT S ++ AA + G
Sbjct: 199 WHQLPLGMGPQTLIFWAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIALKLGA 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + A++ +++ + I ++G + I+Q D+K+++AYS+++ +G++T+
Sbjct: 258 YGFLRFSLPIVPDAAQAMAPMMIALSLIAVIYIGFVAIVQTDMKKLVAYSSIAHMGFVTL 317
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+ ++ +++H F +FL G ++ + H ++I + GG+ K MP
Sbjct: 318 GFFMFNTLGLEG---ALVQMVSHGFVSGAMFLCIG-VLYDRMHTRNIADYGGVVKVMPKF 373
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 374 AAFFMLFSMANAGLPGTSGFVGE 396
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 133/282 (47%), Gaps = 38/282 (13%)
Query: 609 ELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNV 668
L+ L L + I N ++ AAIK+F+ +L S ML + L+ +E FN+
Sbjct: 145 SLIPLYLVIGIWGGTNRVY---AAIKFFLYTLLGSLLMLVALLYLF-----MEAGGSFNI 196
Query: 669 IKLNNINCSVLALSLLL--IIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSL 726
+ + + + +L+ ++ + K+ + P H W+PD + A +++L+ ++L
Sbjct: 197 LDWHQLPLGMGPQTLIFWAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAA---IAL 253
Query: 727 FVIIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
+ Y L + LP+V + + +++ L++ ++I AI Q + K+++AYSSIAHM
Sbjct: 254 KLGAYGFL-RFSLPIVPDAAQAMAPMMIALSLIAVIYIGFVAIVQTDMKKLVAYSSIAHM 312
Query: 783 GLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKT 837
G + +F+ + ++ + ++ +F I ++ + +T N
Sbjct: 313 GFVTLGFFMFNTLGLEGALVQMVSHGFVSGAMFLCIGVLYD-----------RMHTRNIA 361
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
D + G+ + P A M+F + AG P T GF +F +
Sbjct: 362 D----YGGVVKVMPKFAAFFMLFSMANAGLPGTSGFVGEFMV 399
>gi|34496408|ref|NP_900623.1| NADH dehydrogenase subunit M [Chromobacterium violaceum ATCC 12472]
gi|34102261|gb|AAQ58627.1| NADH-ubiquinone oxidoreductase, chain M [Chromobacterium violaceum
ATCC 12472]
Length = 499
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/382 (53%), Positives = 298/382 (78%), Gaps = 7/382 (1%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
SG ++ K WI NI Y LG+DG+S+ F+ L +F TL++++ + I+K++++YM+A
Sbjct: 58 SGGMQFEEMKPWIASLNINYHLGVDGISMLFVVLNSFTTLLVVIAGWEVIQKRVSQYMAA 117
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FLI+SGLI GAF ALD +LFY+FFE LIP+++IIG WGG R YA+IKFFLYTL+GSLL
Sbjct: 118 FLIMSGLINGAFAALDAILFYVFFEGMLIPMYLIIGVWGGPRRVYASIKFFLYTLLGSLL 177
Query: 333 MLISMIYLYYISNKSFNILSWHQLS-ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAH 391
ML+++IYLY+ + KSF IL++H ++ IT QI LF+ FF++FA+K+P+WP+HTWLPDAH
Sbjct: 178 MLVALIYLYFQAGKSFEILAFHDIAKITLTAQILLFVAFFLSFAVKVPMWPVHTWLPDAH 237
Query: 392 VEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQ 451
VEAPT GS++LAAI LK+G YG LRF+LPI PDAS S +II LSL++++YI L+A+VQ
Sbjct: 238 VEAPTGGSMVLAAITLKIGAYGFLRFALPILPDASRELSPIIIGLSLVAVVYIGLVALVQ 297
Query: 452 IDIKKLIAYSSIAHMGFVTLGIFM-----LTKISIQGAIIQMISHALISSAMFISIGFLY 506
D+KKL+AYSSI+HMGFVTLG+F+ + + +++GA++QM+SH +S+AMF IG +Y
Sbjct: 298 SDMKKLVAYSSISHMGFVTLGLFLFAGSEMNQWAVEGALVQMVSHGFVSAAMFFCIGVMY 357
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ +R I+++GG+ N +P F+ F ++F++AN LP TSGF+GEFM+I+ +V+ NF
Sbjct: 358 DRVHSRNIADYGGVANKMPIFAAFMMLFAMANSGLPATSGFVGEFMVIMGSVQVNFWYAA 417
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
L +T LIF AAY+L + K +IF
Sbjct: 418 LAATTLIFGAAYTLWMYKRVIF 439
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 115/211 (54%), Gaps = 11/211 (5%)
Query: 19 SYLLIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAA 77
S+ ++ F + +TA + F+ + K +P+HTWLPD+ +E PT S ++ A
Sbjct: 192 SFEILAFHDIAKITLTAQILLFVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAI 251
Query: 78 TMVTAGIFMITRMSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQ 136
T+ + P+ ++ LS II+ + + ++GL+ ++Q+D+K+++AYS++S
Sbjct: 252 TLKIGAYGFLRFALPILPDASRELSPIIIGLSLVAVVYIGLVALVQSDMKKLVAYSSISH 311
Query: 137 LGYMTVGL------GVSAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
+G++T+GL ++ + V ++ +++H F A +F G ++ + H+++I + GG
Sbjct: 312 MGFVTLGLFLFAGSEMNQWAVEGALVQMVSHGFVSAAMFFCIG-VMYDRVHSRNIADYGG 370
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ MPI ++ ++ G P SGF +
Sbjct: 371 VANKMPIFAAFMMLFAMANSGLPATSGFVGE 401
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 125/256 (48%), Gaps = 21/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A+IK+F+ +L S ML + LY + F ++ ++I L +LL +
Sbjct: 163 ASIKFFLYTLLGSLLMLVALIYLY-----FQAGKSFEILAFHDIAKITLTAQILLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
+ + K+ + P H W+PD + A +++L+ ++L + Y L + LP++ + +
Sbjct: 218 LSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAA---ITLKIGAYGFL-RFALPILPDASR 273
Query: 748 ----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
I++ L++ +++ + A+ Q + K+++AYSSI+HMG + + S N
Sbjct: 274 ELSPIIIGLSLVAVVYIGLVALVQSDMKKLVAYSSISHMGFVTLGLFLFAGSEMNQW--- 330
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ + L ++++ F F I ++ + ++ + + G+ + P A MM+F +
Sbjct: 331 AVEGALVQMVSHGFVSAAMFFCIGVMYDRVHSR--NIADYGGVANKMPIFAAFMMLFAMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
+G P T GF +F +
Sbjct: 389 NSGLPATSGFVGEFMV 404
>gi|451936583|ref|YP_007460437.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777506|gb|AGF48481.1| NADH dehydrogenase I subunit M [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 498
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/370 (59%), Positives = 293/370 (79%), Gaps = 2/370 (0%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
++ WI +I Y +GIDG+SL F+ LT+FIT+I++L + I+ +++EYM+AFLILSG
Sbjct: 68 EENHKWIGSLDINYHIGIDGISLLFLLLTSFITVIVVLAGWESIRNRVSEYMAAFLILSG 127
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L+ G F +LD +LFY+FFE+TLIP++IIIG WGG NR YAA KFFLYTL+GSLLM I+ I
Sbjct: 128 LMNGVFVSLDAILFYVFFESTLIPMYIIIGVWGGYNRFYAAFKFFLYTLLGSLLMFIAFI 187
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YL+ IS SF+IL W ++ I+ EQ +FI F AFA+KIP+WP HTWLPDAHVEAPT G
Sbjct: 188 YLHKISG-SFDILIWQKIKISYTEQFLIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGG 246
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
S+ILAAIMLKLG YG LR SLPI PDAS S L++TLSLI+IIYI IA+VQ D+KKL+
Sbjct: 247 SIILAAIMLKLGAYGFLRLSLPILPDASISLSGLMVTLSLIAIIYIGFIAIVQDDMKKLV 306
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG+F+ + ++GAI+QMISH IS+AMF SIG LY++ +R IS++
Sbjct: 307 AYSSIAHMGFVTLGMFIFNIVGLEGAILQMISHGFISAAMFFSIGVLYDRAHSRAISDYS 366
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+++V+P F VFF+ FS+ANC LP TSGF+GEF++I+ +V+++F + +L +T+LI SA+Y
Sbjct: 367 GLVSVMPRFIVFFVFFSMANCGLPATSGFVGEFLVIIGSVEYSFPVAILAATSLILSASY 426
Query: 579 SLCLSKNIIF 588
SL + K I F
Sbjct: 427 SLWMLKRIAF 436
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 106/197 (53%), Gaps = 8/197 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W ++ T F+ K +P HTWLPD+ +E PT S +I AA M+ G
Sbjct: 201 WQKIKISYTEQFLIFIAFMAAFAVKIPMWPFHTWLPDAHVEAPTGGS-IILAAIMLKLGA 259
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R+S P+ ++ +LS +++ + I ++G + I+Q+D+K+++AYS+++ +G++T+
Sbjct: 260 YGFLRLSLPILPDASISLSGLMVTLSLIAIIYIGFIAIVQDDMKKLVAYSSIAHMGFVTL 319
Query: 143 GL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ + +I +++H F A +F S G ++ + H++ I + GL MP +
Sbjct: 320 GMFIFNIVGLEGAILQMISHGFISAAMFFSIG-VLYDRAHSRAISDYSGLVSVMPRFIVF 378
Query: 200 SLIGLLSLVGAPFFSGF 216
+ ++ G P SGF
Sbjct: 379 FVFFSMANCGLPATSGF 395
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 120/255 (47%), Gaps = 26/255 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S M L+ I+G+ ++ I+ IK++ ++ ++ +
Sbjct: 167 AAFKFFLYTLLGSLLMFIAFIYLHKISGSFDIL-IWQKIKISYTEQFLIFIAFM---AAF 222
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + PFH W+PD + G SII+ ++ KL + + RL + L I+
Sbjct: 223 AVKIPMWPFHTWLPDAHVEAPTGGSIILAAIML---KLGAYGFL-RLSLPILPDASISLS 278
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN--S 804
+++ L++ ++I AI Q + K+++AYSSIAHMG + + IFN
Sbjct: 279 GLMVTLSLIAIIYIGFIAIVQDDMKKLVAYSSIAHMGFVTL----------GMFIFNIVG 328
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ + +I++ F F I +L + ++ + + GL P + + F +
Sbjct: 329 LEGAILQMISHGFISAAMFFSIGVLYDRAHSRA--ISDYSGLVSVMPRFIVFFVFFSMAN 386
Query: 865 AGFPPTIGFYAKFFI 879
G P T GF +F +
Sbjct: 387 CGLPATSGFVGEFLV 401
>gi|121604342|ref|YP_981671.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Polaromonas naphthalenivorans CJ2]
gi|120593311|gb|ABM36750.1| NADH dehydrogenase subunit M [Polaromonas naphthalenivorans CJ2]
Length = 491
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/396 (56%), Positives = 307/396 (77%), Gaps = 9/396 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
+LIG ++ LV P + GF +K WI FN+ Y LG+DG+SLWF+ LTAFI
Sbjct: 34 ALIGAIASFLVTLPLYDGFQLGTSAMQFVEKSSWIPRFNMNYHLGVDGISLWFVLLTAFI 93
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
+++I+ S + I ++ +YM++FLILSGL+IG F ALDGMLFY+FFEATLIP+++IIG W
Sbjct: 94 NVVVIIASWESITTRVNQYMASFLILSGLMIGVFAALDGMLFYVFFEATLIPMYLIIGIW 153
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG N+ YAA KFFLYTL+GSLLML+++I+LY S SF+IL+WH+L ++ Q LF +F
Sbjct: 154 GGPNKIYAAFKFFLYTLLGSLLMLVALIFLYNKSGGSFDILAWHKLPLSATAQTLLFFSF 213
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
F AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDAS+ ++
Sbjct: 214 FAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPITPDASHEWA 273
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
LII LSLI++IY+ L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ +++ G I+QMI+
Sbjct: 274 GLIIALSLIAVIYVGLVALVQRDMKKLVAYSSVAHMGFVTLGFFLFNDLTVSGGIVQMIA 333
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S+AMF+ IG LY+++ +R I+++GG++N +P F+ F ++F++ANC LP T+GF+GE
Sbjct: 334 HGFVSAAMFLCIGVLYDRVHSREIASYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGE 393
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
+M+IL AVK NF IG +TALI AAY+L + K +
Sbjct: 394 WMVILGAVKSNFWIGAAAATALISGAAYTLWMYKRV 429
Score = 87.8 bits (216), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 111/200 (55%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL+ TA F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLSATAQTLLFFSFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +I+ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPITPDASHEWAGLIIALSLIAVIYVGLVALVQRDMKKLVAYSSVAHMGFVTL 314
Query: 143 GLGV-SAYTVS--IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + + TVS I ++ H F A +FL G ++ + H+++I + GG+ MP
Sbjct: 315 GFFLFNDLTVSGGIVQMIAHGFVSAAMFLCIG-VLYDRVHSREIASYGGVVNTMPKFAAF 373
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 374 ALLFAMANCGLPATAGFVGE 393
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLVALIFLYNKSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLS--FKLGISPFHMWVPDVY-----QGASII 713
F+++ + + S A +LL + K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDILAWHKLPLSATAQTLLFFSFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPITPDASHEWAGLIIALSLIAVIYVGLVALVQRDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + +FN + G+ +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFLFNDLTVSGGIVQMIAHGFVSAAMFLCIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIASYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMV 396
>gi|239816471|ref|YP_002945381.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Variovorax paradoxus S110]
gi|239803048|gb|ACS20115.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Variovorax paradoxus S110]
Length = 491
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/387 (56%), Positives = 302/387 (78%), Gaps = 7/387 (1%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P ++GF + +K WI FN+ Y LG+DGLSLW + LT+FIT+++++ +
Sbjct: 43 LVTVPLYTGFENGTAAMQFVEKGSWIARFNVNYHLGVDGLSLWLVLLTSFITVVVVISAW 102
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I +++ +YM AFLILSG +IG F ALDG+LFY+FFEATLIP+++IIG WGG N+ YAA
Sbjct: 103 EVITERVNQYMGAFLILSGFMIGVFAALDGILFYVFFEATLIPMYLIIGIWGGPNKIYAA 162
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFF+YTL+GSLLML+++IYLY S SF+ILSWH+L + Q +LF FF AFA+K+P
Sbjct: 163 FKFFIYTLLGSLLMLVALIYLYNKSGGSFDILSWHKLPLGSTAQTFLFFAFFAAFAVKVP 222
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDAS+ ++ L+I LSLI
Sbjct: 223 MWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASHEWAWLMIALSLI 282
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IY+ L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++ + G I+QMI+H +S AMF
Sbjct: 283 AVIYVGLVALVQEDMKKLVAYSSVAHMGFVTLGFFIFNELGVSGGIVQMIAHGFVSGAMF 342
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ IG LY+++ +R I+++GG++N +P F+ F ++F++ANC LPGT+GF+GE+M+IL AVK
Sbjct: 343 LGIGVLYDRVHSRQIADYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMVILGAVK 402
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNI 586
NF IG +TALIF AAY+L + K +
Sbjct: 403 SNFWIGAGAATALIFGAAYTLWMYKRV 429
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL TA F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLGSTAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQEDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGVS I ++ H F +FL G ++ + H++ I + GG+ MP
Sbjct: 315 GFFIFNELGVSG---GIVQMIAHGFVSGAMFLGIG-VLYDRVHSRQIADYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPGTAGFVGE 393
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+FI +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFIYTLLGSLLMLVALIYLYNKSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLS--FKLGISPFHMWVPDVY-----QGASII 713
F+++ + + A + L + K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDILSWHKLPLGSTAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQEDMKKL 300
Query: 774 IAYSSIAHMG 783
+AYSS+AHMG
Sbjct: 301 VAYSSVAHMG 310
>gi|394989141|ref|ZP_10381975.1| NADH dehydrogenase subunit M [Sulfuricella denitrificans skB26]
gi|393791560|dbj|GAB71614.1| NADH dehydrogenase subunit M [Sulfuricella denitrificans skB26]
Length = 493
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/365 (57%), Positives = 288/365 (78%), Gaps = 2/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI+ F + Y LG+DG+S+ FI LT F T+++++ I+K++A+YM+AFL +SGL+ G
Sbjct: 71 WIETFKVTYHLGVDGISVLFILLTTFTTVLVVIAGWKVIEKRVAQYMAAFLFMSGLMNGV 130
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+F+EA LIP+F+IIG WGG NR YAA+KFFLYTL+GSLLML++ IYLY
Sbjct: 131 FAALDAVLFYVFWEAMLIPMFLIIGIWGGPNRVYAAVKFFLYTLLGSLLMLVAFIYLY-T 189
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+F IL +H+L +T EQI +F FF+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LA
Sbjct: 190 KGGTFEILDFHRLPLTLTEQILIFFAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLK+G YG LR SLPI PDAS+ S +ITLSLI+++YI L+A+ Q D+KKLIAYSSI
Sbjct: 250 AIMLKMGAYGFLRLSLPIVPDASHALSGFMITLSLIAVVYIGLVALAQTDMKKLIAYSSI 309
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFVTLG F+ ++GA++QMISH IS+AMF+S+G LY++M +R+I+++GG+ N
Sbjct: 310 SHMGFVTLGFFIFNAYGVEGALVQMISHGFISAAMFLSVGVLYDRMHSRMIADYGGVANR 369
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ FF++F++AN LPGTSGF+GEFM+I+ AVK NF L + LIF AAY+L +
Sbjct: 370 MPIFAAFFVLFAMANSGLPGTSGFVGEFMVIMGAVKANFWYAFLAAATLIFGAAYTLWMV 429
Query: 584 KNIIF 588
K ++F
Sbjct: 430 KRVVF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 113/196 (57%), Gaps = 8/196 (4%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL +T + F + K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 203 PLTLTEQILIFFAFFMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKMGAYGFL 261
Query: 89 RMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV 146
R+S P+ ++ ALS ++ + I ++GL+ + Q D+K++IAYS++S +G++T+G +
Sbjct: 262 RLSLPIVPDASHALSGFMITLSLIAVVYIGLVALAQTDMKKLIAYSSISHMGFVTLGFFI 321
Query: 147 -SAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIG 203
+AY V ++ +++H F A +FLS G ++ + H++ I + GG+ MPI ++
Sbjct: 322 FNAYGVEGALVQMISHGFISAAMFLSVG-VLYDRMHSRMIADYGGVANRMPIFAAFFVLF 380
Query: 204 LLSLVGAPFFSGFYSK 219
++ G P SGF +
Sbjct: 381 AMANSGLPGTSGFVGE 396
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 125/280 (44%), Gaps = 37/280 (13%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ AA+K+F+ +L S ML LY GT E+ F+ +
Sbjct: 147 LIPMFLIIGIWGGPNRVY---AAVKFFLYTLLGSLLMLVAFIYLYTKGGTFEILD-FHRL 202
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
L ++ + + + K+ + P H W+PD + G S+++ ++
Sbjct: 203 PLTLTEQILIFFAFFMAF---AVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKMGAYG 259
Query: 726 LFVIIYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
++ LP+V + L + L++ +++ + A+ Q + K++IAYSSI+H
Sbjct: 260 F--------LRLSLPIVPDASHALSGFMITLSLIAVVYIGLVALAQTDMKKLIAYSSISH 311
Query: 782 MGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE 839
MG + IFN+ + L +I++ F F + +L + ++
Sbjct: 312 MGFVTL----------GFFIFNAYGVEGALVQMISHGFISAAMFLSVGVLYDRMHSRM-- 359
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ + G+ R P A ++F + +G P T GF +F +
Sbjct: 360 IADYGGVANRMPIFAAFFVLFAMANSGLPGTSGFVGEFMV 399
>gi|30249725|ref|NP_841795.1| NADH dehydrogenase subunit M [Nitrosomonas europaea ATCC 19718]
gi|30180762|emb|CAD85676.1| possible nuoM; transmembrane NADH dehydrogenase I (chain M)
oxidoreductase protein [Nitrosomonas europaea ATCC
19718]
Length = 493
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/398 (52%), Positives = 299/398 (75%), Gaps = 9/398 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
SL+G ++ LV P +SGF + +W + N++Y LG+DG+S+ I L FI
Sbjct: 37 SLVGAVAGFLVALPLYSGFDPSTSAMQFTEHLVWFERLNVFYSLGVDGISMPLIILNCFI 96
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T I+++ + I++++++YM AFLI+SG++ G F +LD +LFY F+E +LIP+FIIIG W
Sbjct: 97 TPIVVIAGWEVIRERVSQYMGAFLIMSGVVNGVFSSLDAVLFYSFWETSLIPMFIIIGVW 156
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG NR YAAIKFFLYTL+GSLLML+++IYLY S SF+IL +H L + QI +FI F
Sbjct: 157 GGPNRIYAAIKFFLYTLLGSLLMLVALIYLYQTSGGSFSILDYHHLPLPMTAQILIFIAF 216
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
+AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAI+LKLG YG LRFSLP+ PDAS+ S
Sbjct: 217 MLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAILLKLGGYGFLRFSLPVAPDASHELS 276
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
++I LSLI+++YI ++A++Q D+KKLIAYSS++HMGFVTLG F+ I+GA++QMIS
Sbjct: 277 GILIVLSLIAVVYIGIVALMQQDMKKLIAYSSVSHMGFVTLGFFLFNAYGIEGAMVQMIS 336
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H IS AMF+ +G LY+++ +R I+++GG++N +P F+ F++F++AN LPGTSGF+GE
Sbjct: 337 HGFISGAMFLCVGVLYDRLHSRQIADYGGVVNRMPVFAALFMLFAMANAGLPGTSGFVGE 396
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
FM+I+ +++ NF G + LI A+Y+L + K +IF
Sbjct: 397 FMVIMGSIEVNFWYGFFAALTLILGASYTLWMYKKVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 115/200 (57%), Gaps = 8/200 (4%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
++ PL +TA + F+ + K +P+HTWLPD+ +E PT S ++ AA ++ G
Sbjct: 199 YHHLPLPMTAQILIFIAFMLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAILLKLGG 257
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ LS I++ + I ++G++ ++Q D+K++IAYS++S +G++T+
Sbjct: 258 YGFLRFSLPVAPDASHELSGILIVLSLIAVVYIGIVALMQQDMKKLIAYSSVSHMGFVTL 317
Query: 143 GLGV-SAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G + +AY + ++ +++H F +FL G ++ + H++ I + GG+ MP+
Sbjct: 318 GFFLFNAYGIEGAMVQMISHGFISGAMFLCVG-VLYDRLHSRQIADYGGVVNRMPVFAAL 376
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 377 FMLFAMANAGLPGTSGFVGE 396
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 122/264 (46%), Gaps = 43/264 (16%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ +L S ML + LY +G F+++ +++ + A L+ I L
Sbjct: 164 AAIKFFLYTLLGSLLMLVALIYLYQTSG-----GSFSILDYHHLPLPMTAQILIFIAFML 218
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN 744
+F K+ + P H W+PD + A T + L I+ +L ++ LP+ +
Sbjct: 219 AFAVKVPMWPVHTWLPDAHVEAP--------TGGSVVLAAILLKLGGYGFLRFSLPVAPD 270
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-----LFSIISIKTS 795
IL++L++ +++ + A+ Q + K++IAYSS++HMG + LF+ I+ +
Sbjct: 271 ASHELSGILIVLSLIAVVYIGIVALMQQDMKKLIAYSSVSHMGFVTLGFFLFNAYGIEGA 330
Query: 796 HNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
+I +F + ++ L + ++ + G+ R P A
Sbjct: 331 MVQMISHGFISGAMFLCVGVLYDRL---------------HSRQIADYGGVVNRMPVFAA 375
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFI 879
+ M+F + AG P T GF +F +
Sbjct: 376 LFMLFAMANAGLPGTSGFVGEFMV 399
>gi|398812107|ref|ZP_10570883.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Variovorax sp. CF313]
gi|398078873|gb|EJL69755.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Variovorax sp. CF313]
Length = 492
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/367 (58%), Positives = 295/367 (80%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI FN+ Y LGIDG+SLW + LT+FIT+++++ + + I +++ +YM AFLILSG
Sbjct: 63 EKTGWISRFNVNYHLGIDGMSLWLVLLTSFITVVVVISAWEVITERVNQYMGAFLILSGF 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+FFEATLIP+++IIG WGG N+ YAA KFF+YTL+GSLLML+++IY
Sbjct: 123 MIGVFAALDGVLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFIYTLLGSLLMLVALIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY S SF+ILSWH+L + Q +LF FF AFA+K+P+WP+HTWLPD HVEAPT GS
Sbjct: 183 LYNKSGGSFDILSWHKLPLGASAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+LAAIMLKLG YG LRFS+PI PDAS+ ++ L+I LSLI++IY+ L+A+VQ D+KKL+A
Sbjct: 243 AVLAAIMLKLGAYGFLRFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQQDMKKLVA 302
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG F+ ++ + G I+QMI+H +S AMF+ IG LY+++ +R I+++GG
Sbjct: 303 YSSVAHMGFVTLGFFIFNELGVSGGIVQMIAHGFVSGAMFLGIGVLYDRVHSRQIADYGG 362
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P F+ F ++F++ANC LPGT+GF+GE+M+IL AVK NF IG+ +TALIF AAY+
Sbjct: 363 VVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMVILGAVKANFWIGMAAATALIFGAAYT 422
Query: 580 LCLSKNI 586
L + K +
Sbjct: 423 LWMYKRV 429
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL +A F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLGASAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGVS I ++ H F +FL G ++ + H++ I + GG+ MP
Sbjct: 315 GFFIFNELGVSG---GIVQMIAHGFVSGAMFLGIG-VLYDRVHSRQIADYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPGTAGFVGE 393
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+FI +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFIYTLLGSLLMLVALIYLYNKSG-- 188
Query: 661 ELQSIFNVIKLNNI--NCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASII 713
F+++ + + S + K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDILSWHKLPLGASAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQQDMKKL 300
Query: 774 IAYSSIAHMG 783
+AYSS+AHMG
Sbjct: 301 VAYSSVAHMG 310
>gi|377555668|ref|ZP_09785396.1| proton-translocating NADH-quinone oxidoreductase, chain M
[endosymbiont of Bathymodiolus sp.]
Length = 501
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/380 (55%), Positives = 289/380 (76%), Gaps = 13/380 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI FNI Y +G+DG+S+ I LT F T+++I + I+K+ A YM+AFL++ GL
Sbjct: 64 EKSAWITQFNINYHIGVDGISMPLIILTTFSTVLVIGAGWEVIQKRPAHYMAAFLMMEGL 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IIG F ALDG+LFY F+EA+LIP+ +I+G WGG NR YAAIKFFLYT +GS+ MLIS+IY
Sbjct: 124 IIGVFSALDGILFYTFWEASLIPMLLIVGIWGGDNRIYAAIKFFLYTFLGSVFMLISLIY 183
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y + SF+IL+WH L +T EQ W+F FF+AFA+K+P++P+HTWLPDAHV+APT GS
Sbjct: 184 MYN-KSASFSILAWHDLGLTATEQAWIFWAFFMAFAVKVPMFPVHTWLPDAHVQAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG RFSLPI PDAS +FS+++I LSLI+++YI +A+VQ D+KKLIA
Sbjct: 243 VILAAIMLKMGGYGFFRFSLPITPDASLHFSDVVIVLSLIAVVYIGFVALVQRDMKKLIA 302
Query: 460 YSSIAHMGFVTLGIFML-----------TKISIQGAIIQMISHALISSAMFISIGFLYNQ 508
YSSI+HMGFVTLG+F L + ++GA++QMISH IS+AMF+ +G LY++
Sbjct: 303 YSSISHMGFVTLGVFALFLAYDPQAPEGAFLGLEGAMVQMISHGFISAAMFLVVGVLYDR 362
Query: 509 MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLT 568
+ +R IS +GG+IN +P F+ F ++F++AN LPGTSGF+GEFM+IL AV+ N VL
Sbjct: 363 LHSREISTYGGVINSMPKFTGFAVLFAMANAGLPGTSGFVGEFMVILGAVQANIWYAVLA 422
Query: 569 STALIFSAAYSLCLSKNIIF 588
+T LI AAY+L + K + +
Sbjct: 423 TTTLIVGAAYTLWMVKRVFW 442
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 25/214 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+D L T F + K FP+HTWLPD+ ++ PT S ++ AA M+ G
Sbjct: 196 WHDLGLTATEQAWIFWAFFMAFAVKVPMFPVHTWLPDAHVQAPTGGSVIL-AAIMLKMGG 254
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ S +++ + I ++G + ++Q D+K++IAYS++S +G++T+
Sbjct: 255 YGFFRFSLPITPDASLHFSDVVIVLSLIAVVYIGFVALVQRDMKKLIAYSSISHMGFVTL 314
Query: 143 G-----------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRN 185
G LG+ V +++H F A +FL G ++ + H+++I
Sbjct: 315 GVFALFLAYDPQAPEGAFLGLEGAMV---QMISHGFISAAMFLVVG-VLYDRLHSREIST 370
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GG+ MP +++ ++ G P SGF +
Sbjct: 371 YGGVINSMPKFTGFAVLFAMANAGLPGTSGFVGE 404
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 140/305 (45%), Gaps = 25/305 (8%)
Query: 609 ELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNV 668
L+ + L V I N I+ AAIK+F+ L S FML + +Y + + F++
Sbjct: 143 SLIPMLLIVGIWGGDNRIY---AAIKFFLYTFLGSVFMLISLIYMYNKSAS------FSI 193
Query: 669 IKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLLLSTTP 722
+ +++ + + + ++F K+ + P H W+PD + G S+I+ ++
Sbjct: 194 LAWHDLGLTATEQAWIFWAFFMAFAVKVPMFPVHTWLPDAHVQAPTGGSVILAAIMLKMG 253
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
F R + +++ ++++L++ +++ A+ Q + K++IAYSSI+HM
Sbjct: 254 GYGFF----RFSLPITPDASLHFSDVVIVLSLIAVVYIGFVALVQRDMKKLIAYSSISHM 309
Query: 783 GLMLFSIISIKTSHNNLI---IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE 839
G + + ++ +++ F + + +I++ F F V+ +L + ++ E
Sbjct: 310 GFVTLGVFALFLAYDPQAPEGAFLGLEGAMVQMISHGFISAAMFLVVGVLYDRLHSR--E 367
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCS 899
+ + G+ P ++F + AG P T GF +F + + IW +L
Sbjct: 368 ISTYGGVINSMPKFTGFAVLFAMANAGLPGTSGFVGEFMVILGAVQA-NIWYAVLATTTL 426
Query: 900 LIGAK 904
++GA
Sbjct: 427 IVGAA 431
>gi|398803082|ref|ZP_10562192.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Polaromonas sp. CF318]
gi|398097290|gb|EJL87600.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Polaromonas sp. CF318]
Length = 491
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/387 (55%), Positives = 300/387 (77%), Gaps = 7/387 (1%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P +SGF +K WI FN+ Y LG+DG+SLWF+ LTAFI +++++ S
Sbjct: 43 LVTLPLYSGFELGTSAMQFVEKGGWIQRFNVNYHLGVDGISLWFVLLTAFINVVVVIASW 102
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I ++ +YM++FLILSGL+IG F ALDG+LFY+FFEATLIP+++IIG WGG N+ YAA
Sbjct: 103 EAITTRVNQYMASFLILSGLMIGVFAALDGILFYVFFEATLIPMYLIIGIWGGPNKIYAA 162
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTL+GSLLML+++IYLY S SF+IL+WH+L + Q LF FF AFA+K+P
Sbjct: 163 FKFFLYTLLGSLLMLVALIYLYNKSGGSFDILTWHKLPLGGTIQTLLFFAFFAAFAVKVP 222
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDA++ ++ L+I LSLI
Sbjct: 223 MWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDAAHEWAWLMIALSLI 282
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+++Y+ L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ + + G ++QMI+H +S AMF
Sbjct: 283 AVVYVGLVALVQQDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLVQMIAHGFVSGAMF 342
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ IG LY+++ +R I+++GG++N +P F+ F ++F++ANC LP T+GF+GE+M+IL AVK
Sbjct: 343 LCIGVLYDRVHSREIASYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMVILGAVK 402
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNI 586
+NF IG +TALIF AAY+L + K +
Sbjct: 403 YNFWIGGAAATALIFGAAYTLWMYKRV 429
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL T F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLGGTIQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + ++ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDAAHEWAWLMIALSLIAVVYVGLVALVQQDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGVS + ++ H F +FL G ++ + H+++I + GG+ MP
Sbjct: 315 GFFIFNDLGVSG---GLVQMIAHGFVSGAMFLCIG-VLYDRVHSREIASYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPATAGFVGE 393
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 127/288 (44%), Gaps = 34/288 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLVALIYLYNKSG-- 188
Query: 661 ELQSIFNVIKLNNI--NCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASII 713
F+++ + + ++ L + K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDILTWHKLPLGGTIQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ +++ + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDAAHEWAWLMIALSLIAVVYVGLVALVQQDMKKL 300
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKN 831
+AYSS+AHMG + IFN GL +I + F F I +L +
Sbjct: 301 VAYSSVAHMGFVTL----------GFFIFNDLGVSGGLVQMIAHGFVSGAMFLCIGVLYD 350
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
++ E+ + G+ P A ++F + G P T GF ++ +
Sbjct: 351 RVHSR--EIASYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMV 396
>gi|319794656|ref|YP_004156296.1| proton-translocating NADH-quinone oxidoreductase subunit m
[Variovorax paradoxus EPS]
gi|315597119|gb|ADU38185.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Variovorax paradoxus EPS]
Length = 492
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/387 (55%), Positives = 301/387 (77%), Gaps = 7/387 (1%)
Query: 207 LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P F+ F + +K WI FN+ Y +G+DGLSLW + LT+FIT+++++ +
Sbjct: 43 LVTVPLFTRFQNGTAAMQFVEKTSWISRFNVNYHIGLDGLSLWMVLLTSFITVVVVISAW 102
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I +++ +YM AFLILSG +IG F ALDG+LFY+FFEATLIP+++IIG WGG N+ YAA
Sbjct: 103 EVITERVNQYMGAFLILSGFMIGVFSALDGILFYVFFEATLIPMYLIIGIWGGPNKIYAA 162
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
KFFLYTL+GSLLML+++I+LY S SF+IL+WH+L + Q +LF FF AFA+K+P
Sbjct: 163 FKFFLYTLLGSLLMLVALIFLYNKSGGSFDILAWHKLPLGSTAQTFLFFAFFAAFAVKVP 222
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFS+PI PDAS+ ++ L+I LSLI
Sbjct: 223 MWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASHEWAWLMIALSLI 282
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
++IY+ L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ ++ + G I+QMI+H +S AMF
Sbjct: 283 AVIYVGLVALVQQDMKKLVAYSSVAHMGFVTLGFFIFNELGVSGGIVQMIAHGFVSGAMF 342
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ IG LY+++ +R I+++GG++N +P F+ F ++F++ANC LPGT+GF+GE+M+IL AVK
Sbjct: 343 LGIGVLYDRVHSRQIADYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMVILGAVK 402
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNI 586
NF IG +TALIF AAY+L + K +
Sbjct: 403 ANFWIGAGAATALIFGAAYTLWMYKRV 429
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL TA F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLGSTAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LGVS I ++ H F +FL G ++ + H++ I + GG+ MP
Sbjct: 315 GFFIFNELGVSG---GIVQMIAHGFVSGAMFLGIG-VLYDRVHSRQIADYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPGTAGFVGE 393
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I+ AA K+F+ +L S ML + LY +G
Sbjct: 134 LFYVFFEATLIPMYLIIGIWGGPNKIY---AAFKFFLYTLLGSLLMLVALIFLYNKSG-- 188
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGASII 713
F+++ + + A + L +F K+ + P H W+PDV+ G++++
Sbjct: 189 ---GSFDILAWHKLPLGSTAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL 245
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
++L KL + + R + W +++ L++ ++I + A+ Q + K++
Sbjct: 246 AAIML----KLGAYGFL-RFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQQDMKKL 300
Query: 774 IAYSSIAHMG 783
+AYSS+AHMG
Sbjct: 301 VAYSSVAHMG 310
>gi|421564402|ref|ZP_16010201.1| NADH dehydrogenase I, M subunit [Neisseria meningitidis NM3081]
gi|402345999|gb|EJU81103.1| NADH dehydrogenase I, M subunit [Neisseria meningitidis NM3081]
Length = 498
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PFARVLTFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIEQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIEQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|15676182|ref|NP_273314.1| NADH dehydrogenase subunit M [Neisseria meningitidis MC58]
gi|385852457|ref|YP_005898971.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
H44/76]
gi|416194969|ref|ZP_11617550.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
CU385]
gi|416211774|ref|ZP_11621528.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M01-240013]
gi|427826985|ref|ZP_18994030.1| NADH-quinone oxidoreductase subunit M [Neisseria meningitidis
H44/76]
gi|433464241|ref|ZP_20421735.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM422]
gi|433489620|ref|ZP_20446759.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM418]
gi|433504136|ref|ZP_20461081.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 9506]
gi|433506301|ref|ZP_20463220.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 9757]
gi|433508432|ref|ZP_20465318.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 12888]
gi|433510518|ref|ZP_20467361.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 4119]
gi|7225481|gb|AAF40712.1| NADH dehydrogenase I, M subunit [Neisseria meningitidis MC58]
gi|316985186|gb|EFV64138.1| NADH-quinone oxidoreductase subunit M [Neisseria meningitidis
H44/76]
gi|325141094|gb|EGC63597.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
CU385]
gi|325145251|gb|EGC67530.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M01-240013]
gi|325199461|gb|ADY94916.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
H44/76]
gi|389604890|emb|CCA43816.1| NADH dehydrogenase subunit M [Neisseria meningitidis alpha522]
gi|432206051|gb|ELK62066.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM422]
gi|432230616|gb|ELK86291.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM418]
gi|432243519|gb|ELK99030.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 9506]
gi|432244317|gb|ELK99812.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 9757]
gi|432250083|gb|ELL05481.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 12888]
gi|432250586|gb|ELL05979.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 4119]
Length = 498
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PFARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIEQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIEQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + ++ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|82702232|ref|YP_411798.1| NADH dehydrogenase subunit M [Nitrosospira multiformis ATCC 25196]
gi|82410297|gb|ABB74406.1| NADH dehydrogenase subunit M [Nitrosospira multiformis ATCC 25196]
Length = 495
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/404 (51%), Positives = 308/404 (76%), Gaps = 9/404 (2%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +L+G ++ LV P ++ F + +WI+ FN++Y LG+DG+++ I
Sbjct: 32 PLARMIALVGSIAGFLVAIPLYTSFDPSTSTMQFVESHVWIERFNVHYHLGVDGIAMPLI 91
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AF T ++++ + I +++++YM AFLI+SG++ G F +LD +LFY+F+EA+LIP+F
Sbjct: 92 LLNAFTTPLVVIAGWEVITRRVSQYMGAFLIMSGIVNGVFSSLDAILFYVFWEASLIPMF 151
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI 364
+IIG WGG NR YAAIKFFLYTL+GSLLML++ IYLY +S SF+IL +H+L ++ QI
Sbjct: 152 LIIGVWGGPNRVYAAIKFFLYTLLGSLLMLVAFIYLYQVSEGSFSILEYHKLPLSMASQI 211
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
+FI F +AFA+K+P+WP+HTWLPDAHVEAPT GSV+LAAI+LK+G YG LRFSLPI PD
Sbjct: 212 LIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAILLKMGGYGFLRFSLPILPD 271
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
AS+ + ++I LSLI+++YI L+A+VQ D+KKLIAYSS+AHMGFVTLG F+ ++GA
Sbjct: 272 ASHQLAGMMIALSLIAVVYIGLVALVQADMKKLIAYSSVAHMGFVTLGFFLFNNYGLEGA 331
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
++QM+SH IS+AMF+ IG +Y+++ +R I ++GG+ + +P F+ FF++F++AN LPGT
Sbjct: 332 MVQMVSHGFISAAMFLCIGVMYDRLHSRQIVDYGGVAHRMPAFAAFFMLFAMANSGLPGT 391
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+I++++K NF L +T LI AAY+L + K +IF
Sbjct: 392 SGFVGEFMVIMASMKVNFWYAFLAATTLITGAAYTLWMYKRVIF 435
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
++ PL++ + + F+ + K +P+HTWLPD+ +E PT S ++ AA ++ G
Sbjct: 200 YHKLPLSMASQILIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAILLKMGG 258
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S+ +++ + I ++GL+ ++Q D+K++IAYS+++ +G++T+
Sbjct: 259 YGFLRFSLPILPDASHQLAGMMIALSLIAVVYIGLVALVQADMKKLIAYSSVAHMGFVTL 318
Query: 143 GL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G G+ ++ +++H F A +FL G ++ + H++ I + GG+ MP
Sbjct: 319 GFFLFNNYGLEG---AMVQMVSHGFISAAMFLCIG-VMYDRLHSRQIVDYGGVAHRMPAF 374
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 375 AAFFMLFAMANSGLPGTSGFVGE 397
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 151/329 (45%), Gaps = 43/329 (13%)
Query: 569 STALIFSAAYSLCLSKNIIFVLGQMIMISG--NNLLS--------IYLGLELMSLTLCVL 618
+T L+ A + +++ + +G +++SG N + S ++ L+ + L +
Sbjct: 97 TTPLVVIAGWE-VITRRVSQYMGAFLIMSGIVNGVFSSLDAILFYVFWEASLIPMFLIIG 155
Query: 619 IASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSV 678
+ N ++ AAIK+F+ +L S ML LY ++ + F++++ + + S+
Sbjct: 156 VWGGPNRVY---AAIKFFLYTLLGSLLMLVAFIYLYQVS-----EGSFSILEYHKLPLSM 207
Query: 679 LALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYR 732
+ L+ I L+F K+ + P H W+PD + G S+++ +L R
Sbjct: 208 ASQILIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAILLKMGGYGFL----R 263
Query: 733 LLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
+ L +++ L++ +++ + A+ Q + K++IAYSS+AHMG +
Sbjct: 264 FSLPILPDASHQLAGMMIALSLIAVVYIGLVALVQADMKKLIAYSSVAHMGFVTL----- 318
Query: 793 KTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRN 850
+FN+ + + ++++ F F I ++ + ++ ++ + G+ R
Sbjct: 319 -----GFFLFNNYGLEGAMVQMVSHGFISAAMFLCIGVMYDRLHSR--QIVDYGGVAHRM 371
Query: 851 PWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A M+F + +G P T GF +F +
Sbjct: 372 PAFAAFFMLFAMANSGLPGTSGFVGEFMV 400
>gi|329118920|ref|ZP_08247615.1| NADH-quinone oxidoreductase subunit M [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464948|gb|EGF11238.1| NADH-quinone oxidoreductase subunit M [Neisseria bacilliformis ATCC
BAA-1200]
Length = 499
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/411 (52%), Positives = 304/411 (73%), Gaps = 17/411 (4%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +LIG L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARMLALIGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDALLFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITK--IE 362
+IIG WGG R YA++K FLYTLMGSLLML++++YL Y + SF I + L I+
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVALVYLSYQAGGSFMIADFQNLKQIPLGIQ 210
Query: 363 QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIF 422
Q+ LF+ FF++FA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI
Sbjct: 211 QL-LFVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPIL 269
Query: 423 PDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LT 477
PDAS YF+ +I+ LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 PDASRYFAPVIVVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFLDGRLN 329
Query: 478 KISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+++GAI+QMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +A
Sbjct: 330 DWAVKGAIMQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMA 389
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
N LP TSGF+GEFM+I+ +V NF +G+L + LI A+Y+L + K +IF
Sbjct: 390 NAGLPATSGFVGEFMVIMGSVAVNFWVGLLAAITLILGASYTLWMYKRVIF 440
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDASRYFAPVIVVL 283
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 284 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFLDGRLNDWAVKGAIMQMISH 343
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 344 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 402
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 121/256 (47%), Gaps = 21/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISIL-YGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
A++K F+ ++ S ML + L Y G+ + N L I + L + +
Sbjct: 164 ASVKLFLYTLMGSLLMLVALVYLSYQAGGSFMIADFQN---LKQIPLGIQQLLFVAFFLS 220
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-- 747
+ K+ + P H W+PD + A +++L+ ++L V Y L + +LP++ + +
Sbjct: 221 FAVKVPMWPVHTWLPDAHVEAPTGGSMVLAA---ITLKVGAYGFL-RFILPILPDASRYF 276
Query: 748 --ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + N +
Sbjct: 277 APVIVVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFLDGRLNDW---AV 333
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 334 KGAIMQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 389
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 390 NAGLPATSGFVGEFMV 405
>gi|421562476|ref|ZP_16008303.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM2795]
gi|421907546|ref|ZP_16337421.1| NADH dehydrogenase I chain M [Neisseria meningitidis alpha704]
gi|393291215|emb|CCI73415.1| NADH dehydrogenase I chain M [Neisseria meningitidis alpha704]
gi|402343132|gb|EJU78287.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM2795]
Length = 498
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|385339298|ref|YP_005893170.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
G2136]
gi|433466372|ref|ZP_20423835.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 87255]
gi|433468493|ref|ZP_20425930.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 98080]
gi|433495968|ref|ZP_20453017.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis M7089]
gi|433498115|ref|ZP_20455131.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis M7124]
gi|433500044|ref|ZP_20457035.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM174]
gi|325197542|gb|ADY92998.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
G2136]
gi|432205160|gb|ELK61191.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 87255]
gi|432206579|gb|ELK62586.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 98080]
gi|432236882|gb|ELK92486.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis M7124]
gi|432237610|gb|ELK93203.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis M7089]
gi|432237756|gb|ELK93347.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM174]
Length = 498
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|416200274|ref|ZP_11619589.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
961-5945]
gi|416200349|ref|ZP_11619615.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
961-5945]
gi|325143097|gb|EGC65444.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
961-5945]
gi|325143167|gb|EGC65513.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
961-5945]
Length = 498
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|261400486|ref|ZP_05986611.1| NADH dehydrogenase, M subunit [Neisseria lactamica ATCC 23970]
gi|269209745|gb|EEZ76200.1| NADH dehydrogenase, M subunit [Neisseria lactamica ATCC 23970]
Length = 498
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFVGALAGFLVTLPLFAGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|418287456|ref|ZP_12900054.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM233]
gi|418289703|ref|ZP_12901955.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM220]
gi|372203065|gb|EHP16797.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM220]
gi|372203723|gb|EHP17335.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM233]
Length = 498
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|421549816|ref|ZP_15995826.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 69166]
gi|433470509|ref|ZP_20427909.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 68094]
gi|433476835|ref|ZP_20434163.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 70012]
gi|433521048|ref|ZP_20477749.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 61103]
gi|433525141|ref|ZP_20481787.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 69096]
gi|433538019|ref|ZP_20494506.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 70030]
gi|402331767|gb|EJU67099.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 69166]
gi|432211942|gb|ELK67886.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 68094]
gi|432217988|gb|ELK73853.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 70012]
gi|432262514|gb|ELL17752.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 61103]
gi|432263289|gb|ELL18509.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 69096]
gi|432276159|gb|ELL31221.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 70030]
Length = 498
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|421543659|ref|ZP_15989750.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM140]
gi|421545720|ref|ZP_15991780.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM183]
gi|421547787|ref|ZP_15993819.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM2781]
gi|421551999|ref|ZP_15997980.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM576]
gi|402325948|gb|EJU61355.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM183]
gi|402326501|gb|EJU61903.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM140]
gi|402327807|gb|EJU63194.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM2781]
gi|402332915|gb|EJU68233.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM576]
Length = 498
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|313669272|ref|YP_004049556.1| NADH dehydrogenase chain M [Neisseria lactamica 020-06]
gi|313006734|emb|CBN88204.1| NADH dehydrogenase chain M [Neisseria lactamica 020-06]
Length = 498
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFVGALAGFLVTLPLFAGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIRKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIILSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIIL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
+++IL++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIILSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|218768959|ref|YP_002343471.1| NADH dehydrogenase subunit M [Neisseria meningitidis Z2491]
gi|385338843|ref|YP_005892716.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M;
NDH-1, chain M) [Neisseria meningitidis WUE 2594]
gi|433474738|ref|ZP_20432086.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 88050]
gi|433478965|ref|ZP_20436264.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 63041]
gi|433512622|ref|ZP_20469424.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 63049]
gi|433514596|ref|ZP_20471372.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2004090]
gi|433516849|ref|ZP_20473602.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 96023]
gi|433519039|ref|ZP_20475765.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 65014]
gi|433523175|ref|ZP_20479847.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 97020]
gi|433527428|ref|ZP_20484041.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM3652]
gi|433529521|ref|ZP_20486120.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM3642]
gi|433531639|ref|ZP_20488208.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2007056]
gi|433533613|ref|ZP_20490162.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2001212]
gi|433540194|ref|ZP_20496651.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 63006]
gi|121052967|emb|CAM09321.1| NADH dehydrogenase chain M [Neisseria meningitidis Z2491]
gi|319411257|emb|CBY91664.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M;
NDH-1, chain M) [Neisseria meningitidis WUE 2594]
gi|432212798|gb|ELK68733.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 88050]
gi|432218939|gb|ELK74791.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 63041]
gi|432250377|gb|ELL05772.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 63049]
gi|432256063|gb|ELL11388.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 96023]
gi|432256260|gb|ELL11583.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2004090]
gi|432256780|gb|ELL12094.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 65014]
gi|432262631|gb|ELL17867.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 97020]
gi|432267497|gb|ELL22675.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM3652]
gi|432269659|gb|ELL24816.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2007056]
gi|432269772|gb|ELL24925.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM3642]
gi|432274166|gb|ELL29259.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2001212]
gi|432278175|gb|ELL33219.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 63006]
Length = 498
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|433487446|ref|ZP_20444625.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis M13255]
gi|432226211|gb|ELK81944.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis M13255]
Length = 498
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/410 (52%), Positives = 302/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PFARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWAVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIEQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIEQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|319638831|ref|ZP_07993589.1| NADH dehydrogenase chain M [Neisseria mucosa C102]
gi|317399735|gb|EFV80398.1| NADH dehydrogenase chain M [Neisseria mucosa C102]
Length = 498
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAI+QMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIVQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|161870806|ref|YP_001599979.1| NADH dehydrogenase subunit M [Neisseria meningitidis 053442]
gi|161596359|gb|ABX74019.1| NADH dehydrogenase chain M [Neisseria meningitidis 053442]
Length = 477
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 10 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 69
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 70 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 129
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 130 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 188
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 189 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 248
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 249 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 308
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 309 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 368
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 369 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 418
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 202 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 261
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 262 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 321
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 322 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 380
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 143 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 196
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 197 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 255
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 256 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 315
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 316 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 360
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 361 MMLFGMANAGLPATSGFVGEFMV 383
>gi|349575430|ref|ZP_08887347.1| NADH-quinone oxidoreductase subunit M [Neisseria shayeganii 871]
gi|348013009|gb|EGY51936.1| NADH-quinone oxidoreductase subunit M [Neisseria shayeganii 871]
Length = 507
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/415 (52%), Positives = 304/415 (73%), Gaps = 26/415 (6%)
Query: 198 ITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTA 249
I + IG L+ LV P F+GF Y +K WI NI+Y LG+DG+S+ F+ L A
Sbjct: 36 ILAFIGSLAGFLVTIPLFTGFDRLHGGYQFVEKLAWIPSLNIHYALGVDGISVLFVILNA 95
Query: 250 FITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIG 308
FITL+++L I+K++A+YM AFL++SGLI GAF A D +LFY+FFE LIP+++IIG
Sbjct: 96 FITLMVVLAGWQVIQKRVAQYMGAFLMMSGLINGAFSAQDAILFYVFFEGMLIPLYLIIG 155
Query: 309 TWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE---QIW 365
WGG R YA+IK FLYTL+GSLLML+++IYL ++ SF I + I KI+ Q W
Sbjct: 156 VWGGPRRVYASIKLFLYTLLGSLLMLVALIYLSTQADGSFAITDLQR--IAKIDLPVQQW 213
Query: 366 LFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDA 425
LF+ FF++FA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI PDA
Sbjct: 214 LFVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDA 273
Query: 426 SYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM---------- 475
+ +F+ +++ +SLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLGIFM
Sbjct: 274 ARFFAPVVVVVSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFMFSGIFSGSPL 333
Query: 476 --LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
L + ++GAI+QMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++
Sbjct: 334 GELNRWGLEGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMML 393
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F +AN LP TSGF+GEFM+I+ AV+ NF +G L + LI+ AAY+L + K IF
Sbjct: 394 FGMANAGLPATSGFVGEFMVIMGAVQVNFWVGALAALTLIYGAAYTLWMYKRTIF 448
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ A T+ + + P+ + + +++ +
Sbjct: 225 KVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDAARFFAPVVVVV 284
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---------------LGVSAYTVS 152
I ++G++ ++Q D+K+++AYS++S +G++T+G L +
Sbjct: 285 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFMFSGIFSGSPLGELNRWGLEGA 344
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
I +++H F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P
Sbjct: 345 IVQMISHGFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPA 403
Query: 213 FSGFYSK 219
SGF +
Sbjct: 404 TSGFVGE 410
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 149/319 (46%), Gaps = 33/319 (10%)
Query: 581 CLSKNIIFVLGQMIMISG--------NNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSE 630
+ K + +G +M+SG + + Y+ E L+ L L + + +++S
Sbjct: 108 VIQKRVAQYMGAFLMMSGLINGAFSAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYAS- 166
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
IK F+ +L S ML ++++Y T +I ++ ++ I+ V + +
Sbjct: 167 --IKLFLYTLLGSLLML--VALIYLSTQADGSFAITDLQRIAKIDLPVQQWLFVAFFLSF 222
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL- 749
+ K+ + P H W+PD + A +++L+ ++L V Y L + +LP++ + +
Sbjct: 223 AVKVPMWPVHTWLPDAHVEAPTGGSMVLAA---ITLKVGAYGFL-RFILPILPDAARFFA 278
Query: 750 ---LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT--SHNNLIIFN- 803
+++++ ++I + A+ Q + K+++AYSSI+HMG + I S + L N
Sbjct: 279 PVVVVVSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFMFSGIFSGSPLGELNR 338
Query: 804 -SCDSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ + +I++ F F I ++ + +T N D + G+ P A MM+F
Sbjct: 339 WGLEGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLF 394
Query: 861 MFSLAGFPPTIGFYAKFFI 879
+ AG P T GF +F +
Sbjct: 395 GMANAGLPATSGFVGEFMV 413
>gi|385850519|ref|YP_005897034.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M04-240196]
gi|325205342|gb|ADZ00795.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M04-240196]
Length = 498
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|416181455|ref|ZP_11611649.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M13399]
gi|325135061|gb|EGC57689.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M13399]
Length = 498
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PFARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIEQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +I+
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIY 439
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIEQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|254805700|ref|YP_003083921.1| NADH dehydrogenase subunit M [Neisseria meningitidis alpha14]
gi|254669242|emb|CBA08106.1| nuoM; NADH dehydrogenase I chain M [Neisseria meningitidis alpha14]
Length = 498
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/395 (54%), Positives = 296/395 (74%), Gaps = 14/395 (3%)
Query: 207 LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P F+GF Y + WI I Y LG+DG+S+ FI L AFITL+++L
Sbjct: 46 LVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLAGW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP+++IIG WGG R YA+
Sbjct: 106 EVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYAS 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-QIWLFITFFIAFAIKI 378
+K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q LF FF++FA+K+
Sbjct: 166 VKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVKV 224
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P++P+HTWLPDAHVEAPT GS++LAAIMLKLG YG LRF LPI PDA+ YF+ +II LSL
Sbjct: 225 PMFPVHTWLPDAHVEAPTGGSMVLAAIMLKLGAYGFLRFILPIMPDAARYFAPVIIVLSL 284
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKISIQGAIIQMISHAL 493
I++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L +++GAIIQMISH
Sbjct: 285 IAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHGF 344
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN LP TSGF+GEFM+
Sbjct: 345 VSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMV 404
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 405 IMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 98/181 (54%), Gaps = 13/181 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR--MSPLFELSNTALSIILF 106
K FP+HTWLPD+ +E PT S ++ AA M+ G + R + + + + +I+
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGS-MVLAAIMLKLGAYGFLRFILPIMPDAARYFAPVIIV 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMT 158
+ I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++
Sbjct: 282 LSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMIS 341
Query: 159 HAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
H F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF
Sbjct: 342 HGFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVG 400
Query: 219 K 219
+
Sbjct: 401 E 401
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 125/263 (47%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI 743
+ + K+ + P H W+PD + A T + L I+ +L ++ +LP++
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAP--------TGGSMVLAAIMLKLGAYGFLRFILPIMP 269
Query: 744 NWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNN 798
+ + ++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALI 856
+ + +I++ F F I ++ + +T N D + G+ P A
Sbjct: 330 W----ALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|421537295|ref|ZP_15983483.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 93003]
gi|402319772|gb|EJU55277.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 93003]
Length = 498
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|416167978|ref|ZP_11607808.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
OX99.30304]
gi|416190089|ref|ZP_11615569.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
ES14902]
gi|421554004|ref|ZP_15999955.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 98008]
gi|325130984|gb|EGC53711.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
OX99.30304]
gi|325139147|gb|EGC61693.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
ES14902]
gi|402334040|gb|EJU69335.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 98008]
Length = 498
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +I+
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIY 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|296313732|ref|ZP_06863673.1| NADH dehydrogenase, M subunit [Neisseria polysaccharea ATCC 43768]
gi|296839655|gb|EFH23593.1| NADH dehydrogenase, M subunit [Neisseria polysaccharea ATCC 43768]
Length = 498
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIVP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIVPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 124/267 (46%), Gaps = 44/267 (16%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + ++ +LP+V +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYG-----FLRFILPIVPDAA 272
Query: 747 K----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SI 792
+ ++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++
Sbjct: 273 RYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWAL 332
Query: 793 KTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPW 852
K + +I + +F I ++ L +T N D + G+ P
Sbjct: 333 KGAVIQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPK 377
Query: 853 CALIMMIFMFSLAGFPPTIGFYAKFFI 879
A MM+F + AG P T GF +F +
Sbjct: 378 FAAFMMLFGMANAGLPATSGFVGEFMV 404
>gi|121634128|ref|YP_974373.1| NADH dehydrogenase subunit M [Neisseria meningitidis FAM18]
gi|433493852|ref|ZP_20450928.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM762]
gi|120865834|emb|CAM09566.1| NADH dehydrogenase chain M [Neisseria meningitidis FAM18]
gi|432232030|gb|ELK87685.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM762]
Length = 498
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|385854432|ref|YP_005900945.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M01-240355]
gi|325203373|gb|ADY98826.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M01-240355]
Length = 498
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|416186284|ref|ZP_11613645.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M0579]
gi|325137083|gb|EGC59679.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M0579]
Length = 498
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|261379566|ref|ZP_05984139.1| NADH dehydrogenase, M subunit [Neisseria subflava NJ9703]
gi|284798040|gb|EFC53387.1| NADH dehydrogenase, M subunit [Neisseria subflava NJ9703]
Length = 498
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YL+Y SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLHY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + L+ TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLHYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|385327624|ref|YP_005881927.1| NADH dehydrogenase chain M [Neisseria meningitidis alpha710]
gi|385342709|ref|YP_005896580.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M01-240149]
gi|385856397|ref|YP_005902909.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
NZ-05/33]
gi|308388476|gb|ADO30796.1| NADH dehydrogenase chain M [Neisseria meningitidis alpha710]
gi|325202915|gb|ADY98369.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M01-240149]
gi|325207286|gb|ADZ02738.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
NZ-05/33]
Length = 498
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|421862664|ref|ZP_16294369.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379788|emb|CBX21564.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 498
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIVP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ VK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGTVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIVPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 138/286 (48%), Gaps = 33/286 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + ++ +LP+V +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYG-----FLRFILPIVPDAA 272
Query: 747 K----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ ++++L++ ++I + A+ Q + K+++AYSSI+HMG F + + N +
Sbjct: 273 RYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMG---FVTLGMFLFVNGQLDD 329
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ + +I++ F F I ++ + +T N D + G+ P A MM+F
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLF 385
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKI--WLLLLIIMCSLIGAK 904
+ AG P T GF +F + I T K+ W+ L M + GA
Sbjct: 386 GMANAGLPATSGFVGEFMV---IMGTVKVNFWVGALAAMTLIYGAS 428
>gi|304389084|ref|ZP_07371128.1| NADH-quinone oxidoreductase subunit M [Neisseria meningitidis ATCC
13091]
gi|304336957|gb|EFM03147.1| NADH-quinone oxidoreductase subunit M [Neisseria meningitidis ATCC
13091]
Length = 498
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|241760716|ref|ZP_04758808.1| NADH dehydrogenase subunit M [Neisseria flavescens SK114]
gi|241318897|gb|EER55423.1| NADH dehydrogenase subunit M [Neisseria flavescens SK114]
Length = 498
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFF------SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F SG Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTQFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|261378527|ref|ZP_05983100.1| NADH dehydrogenase, M subunit [Neisseria cinerea ATCC 14685]
gi|269145077|gb|EEZ71495.1| NADH dehydrogenase, M subunit [Neisseria cinerea ATCC 14685]
Length = 498
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/410 (52%), Positives = 302/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARALAFMGALAGFLVTLPLFTGFDRLSSGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|416179736|ref|ZP_11611172.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M6190]
gi|433491745|ref|ZP_20448847.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM586]
gi|433502072|ref|ZP_20459043.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM126]
gi|325131598|gb|EGC54305.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
M6190]
gi|432230765|gb|ELK86437.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM586]
gi|432243284|gb|ELK98796.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM126]
Length = 498
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|225077036|ref|ZP_03720235.1| hypothetical protein NEIFLAOT_02088 [Neisseria flavescens
NRL30031/H210]
gi|224951593|gb|EEG32802.1| hypothetical protein NEIFLAOT_02088 [Neisseria flavescens
NRL30031/H210]
Length = 498
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGGWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 20/255 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++++L++ ++I + A+ Q + K+++AYSSI+HMG F + + N + +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMG---FVTLGMFLFVNGQLDDWALK 333
Query: 807 SGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 334 GAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMAN 389
Query: 865 AGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 390 AGLPATSGFVGEFMV 404
>gi|350570524|ref|ZP_08938877.1| NADH-quinone oxidoreductase subunit M [Neisseria wadsworthii 9715]
gi|349796149|gb|EGZ49939.1| NADH-quinone oxidoreductase subunit M [Neisseria wadsworthii 9715]
Length = 505
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/414 (52%), Positives = 305/414 (73%), Gaps = 24/414 (5%)
Query: 198 ITSLIGLLS--LVGAPFF------SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTA 249
I +L+G L+ LV P F SG Y + WI NI Y LG+DG+S+ FI L A
Sbjct: 34 ILALVGSLAGFLVTLPLFTQFDRLSGGYQFTEFHSWIPILNINYALGVDGISVLFIILNA 93
Query: 250 FITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIG 308
FITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP+++IIG
Sbjct: 94 FITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIG 153
Query: 309 TWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITK--IEQIWL 366
WGG R YA++K FLYTL+GSLLML++++YL Y + SF+I+ + L I+Q+ L
Sbjct: 154 MWGGPRRVYASVKLFLYTLLGSLLMLVALVYLSYQAGGSFSIVEFQNLKQIPLGIQQL-L 212
Query: 367 FITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
FI FF++FA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI PDAS
Sbjct: 213 FIAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDAS 272
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI------- 479
YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLGIF+ + +
Sbjct: 273 RYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGANLG 332
Query: 480 -----SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIF 534
++GAI+QMISH +S+AMF+ IG +Y+++ +R I+++GG++NV+P F+ F ++F
Sbjct: 333 ELNDWGLKGAIVQMISHGFVSAAMFMCIGVMYDRLHSRNIADYGGVVNVMPKFAAFMMLF 392
Query: 535 SLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+AN LP TSGF+GEFM+I+ AV+ NF +G L + LI+ A+Y+L + K +IF
Sbjct: 393 GMANAGLPATSGFVGEFMVIMGAVEVNFWVGALAAITLIYGASYTLWMYKRVIF 446
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---------------LGVSAYTVS 152
I ++G++ ++Q D+K+++AYS++S +G++T+G L +
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGANLGELNDWGLKGA 342
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
I +++H F A +F+ G ++ + H+++I + GG+ MP ++ ++ G P
Sbjct: 343 IVQMISHGFVSAAMFMCIG-VMYDRLHSRNIADYGGVVNVMPKFAAFMMLFGMANAGLPA 401
Query: 213 FSGFYSK 219
SGF +
Sbjct: 402 TSGFVGE 408
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 128/267 (47%), Gaps = 22/267 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ +L S ML + L + + F++++ N+ L + LL I
Sbjct: 163 ASVKLFLYTLLGSLLMLVALVYL-----SYQAGGSFSIVEFQNLKQIPLGIQQLLFIAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
+ + K+ + P H W+PD + A +++L+ ++L V Y L + +LP++ + +
Sbjct: 218 LSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAA---ITLKVGAYGFL-RFILPILPDASR 273
Query: 748 ----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI--ISIKTSHNNLII 801
++++L++ ++I + A+ Q + K+++AYSSI+HMG + I S S NL
Sbjct: 274 YFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGANLGE 333
Query: 802 FNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
N + +I++ F F I ++ + ++ + + G+ P A MM+
Sbjct: 334 LNDWGLKGAIVQMISHGFVSAAMFMCIGVMYDRLHSR--NIADYGGVVNVMPKFAAFMML 391
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFET 886
F + AG P T GF +F + E
Sbjct: 392 FGMANAGLPATSGFVGEFMVIMGAVEV 418
>gi|421556250|ref|ZP_16002167.1| NADH dehydrogenase I, M subunit [Neisseria meningitidis 80179]
gi|402338103|gb|EJU73342.1| NADH dehydrogenase I, M subunit [Neisseria meningitidis 80179]
Length = 498
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PFARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +I+
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIY 439
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|385323402|ref|YP_005877841.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M;
NDH-1, chain M) [Neisseria meningitidis 8013]
gi|421558267|ref|ZP_16004150.1| NADH-quinone oxidoreductase chain M [Neisseria meningitidis 92045]
gi|421560417|ref|ZP_16006276.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM2657]
gi|254671581|emb|CBA09240.1| NADH-ubiquinone oxidoreductase, chain M [Neisseria meningitidis
alpha153]
gi|261391789|emb|CAX49244.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M;
NDH-1, chain M) [Neisseria meningitidis 8013]
gi|402338449|gb|EJU73682.1| NADH-quinone oxidoreductase chain M [Neisseria meningitidis 92045]
gi|402340590|gb|EJU75790.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis NM2657]
Length = 498
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +I+
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIY 439
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|416159342|ref|ZP_11605806.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
N1568]
gi|433472639|ref|ZP_20430009.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 97021]
gi|433481063|ref|ZP_20438335.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2006087]
gi|433483185|ref|ZP_20440423.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2002038]
gi|433485286|ref|ZP_20442492.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 97014]
gi|325129052|gb|EGC51902.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis
N1568]
gi|432212523|gb|ELK68461.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 97021]
gi|432219416|gb|ELK75263.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2006087]
gi|432223631|gb|ELK79411.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 2002038]
gi|432224746|gb|ELK80509.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 97014]
Length = 498
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/395 (54%), Positives = 295/395 (74%), Gaps = 14/395 (3%)
Query: 207 LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P F+GF Y + WI I Y LG+DG+S+ FI L AFITL+++L
Sbjct: 46 LVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLAGW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP+++IIG WGG R YA+
Sbjct: 106 EVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYAS 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-QIWLFITFFIAFAIKI 378
+K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q LF FF++FA+K+
Sbjct: 166 VKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVKV 224
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI PDA+ YF+ +II LSL
Sbjct: 225 PMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLSL 284
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKISIQGAIIQMISHAL 493
I++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L +++GAIIQMISH
Sbjct: 285 IAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHGF 344
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN LP TSGF+GEFM+
Sbjct: 345 VSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMV 404
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 405 IMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|421746567|ref|ZP_16184355.1| NADH:ubiquinone oxidoreductase subunit M [Cupriavidus necator
HPC(L)]
gi|409774884|gb|EKN56441.1| NADH:ubiquinone oxidoreductase subunit M [Cupriavidus necator
HPC(L)]
Length = 488
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/371 (59%), Positives = 300/371 (80%), Gaps = 6/371 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI+ FNI+Y LG+DG+S+WF+ LTAFIT+I+++ + I +++A YM++FLILSG+
Sbjct: 62 EKYSWIERFNIHYHLGVDGISMWFVVLTAFITVIVVIAGWEVITERVAAYMASFLILSGI 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LDGMLFY+FFEATLIP++IIIG WGG NR YAA KFFLYTL+GSLL L++++Y
Sbjct: 122 MVGVFASLDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALLY 181
Query: 340 LYYISNK--SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
LY NK SF IL WHQ ++ EQ+ LF+ FF+AFA+K+P+WP+HTWLPDAHVEAPT
Sbjct: 182 LY---NKTGSFEILQWHQAKLSMNEQVLLFLAFFLAFAVKVPMWPVHTWLPDAHVEAPTG 238
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSV+LAAIMLKLG YG LRFSLPI PDAS+ + II +SL+++IYI L+AMVQ D+KKL
Sbjct: 239 GSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFIIAISLVAVIYIGLVAMVQADMKKL 298
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
+AYSSIAHMGFVTLG F+ ++I I+G I+QMISH IS AMF+ IG LY+++ +R I+++
Sbjct: 299 VAYSSIAHMGFVTLGFFIFSEIGIEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADY 358
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++N +P F+ F + F++AN LP TSGF+GE+M+IL V++NF IG+ +T+LI AA
Sbjct: 359 GGVVNTMPKFAAFAVFFAMANSGLPATSGFVGEWMVILGGVQYNFWIGLAAATSLILGAA 418
Query: 578 YSLCLSKNIIF 588
YSL + K ++F
Sbjct: 419 YSLWMVKRVVF 429
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ L++ + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 194 WHQAKLSMNEQVLLFLAFFLAFAVKVPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKLGA 252
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S++ + I+ I + ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 253 YGFLRFSLPIAPDASHSLAAFIIAISLVAVIYIGLVAMVQADMKKLVAYSSIAHMGFVTL 312
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +G+ I +++H F +FL G ++ + H++ I + GG+ MP
Sbjct: 313 GFFIFSEIGIEG---GIVQMISHGFISGAMFLCIG-VLYDRVHSRQIADYGGVVNTMPKF 368
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
++ ++ G P SGF +
Sbjct: 369 AAFAVFFAMANSGLPATSGFVGE 391
>gi|59802059|ref|YP_208771.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA 1090]
gi|194099631|ref|YP_002002762.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae NCCP11945]
gi|240014986|ref|ZP_04721899.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae DGI18]
gi|240017434|ref|ZP_04723974.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA6140]
gi|240122055|ref|ZP_04735017.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID24-1]
gi|268595640|ref|ZP_06129807.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 35/02]
gi|268597672|ref|ZP_06131839.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA19]
gi|268602258|ref|ZP_06136425.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID18]
gi|268604524|ref|ZP_06138691.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID1]
gi|268682979|ref|ZP_06149841.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID332]
gi|268685144|ref|ZP_06152006.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-92-679]
gi|268687406|ref|ZP_06154268.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-93-1035]
gi|291042891|ref|ZP_06568632.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae DGI2]
gi|293398099|ref|ZP_06642304.1| NADH dehydrogenase I subunit M [Neisseria gonorrhoeae F62]
gi|385336576|ref|YP_005890523.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae TCDC-NG08107]
gi|59718954|gb|AAW90359.1| putative NADH dehydrogenase I chain M [Neisseria gonorrhoeae FA
1090]
gi|193934921|gb|ACF30745.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae NCCP11945]
gi|268549029|gb|EEZ44447.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 35/02]
gi|268551460|gb|EEZ46479.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA19]
gi|268586389|gb|EEZ51065.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID18]
gi|268588655|gb|EEZ53331.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID1]
gi|268623263|gb|EEZ55663.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID332]
gi|268625428|gb|EEZ57828.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-92-679]
gi|268627690|gb|EEZ60090.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-93-1035]
gi|291013325|gb|EFE05291.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae DGI2]
gi|291611362|gb|EFF40432.1| NADH dehydrogenase I subunit M [Neisseria gonorrhoeae F62]
gi|317165119|gb|ADV08660.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae TCDC-NG08107]
Length = 498
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/410 (51%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTL GSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLTGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+++ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVVMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ + S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLTGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|421541601|ref|ZP_15987718.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM255]
gi|402319970|gb|EJU55474.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NM255]
Length = 498
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 302/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GE M+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGELMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF + +
Sbjct: 382 MMLFGMANAGLPATSGFVGELMV 404
>gi|254494612|ref|ZP_05107783.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 1291]
gi|268599923|ref|ZP_06134090.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae MS11]
gi|226513652|gb|EEH62997.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 1291]
gi|268584054|gb|EEZ48730.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae MS11]
Length = 498
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/410 (51%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTL GSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLTGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ +G +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCVGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+++ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVVMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCVG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 121/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ + S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLTGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F + ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCVGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|421568441|ref|ZP_16014164.1| NADH-quinone oxidoreductase chain M [Neisseria meningitidis NM3001]
gi|402341383|gb|EJU76562.1| NADH-quinone oxidoreductase chain M [Neisseria meningitidis NM3001]
Length = 498
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/395 (53%), Positives = 296/395 (74%), Gaps = 14/395 (3%)
Query: 207 LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P F+GF Y + WI I Y LG+DG+S+ FI L AFITL+++L
Sbjct: 46 LVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLAGW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP+++IIG WGG R YA+
Sbjct: 106 EVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYAS 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-QIWLFITFFIAFAIKI 378
+K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q LF+ FF++FA+K+
Sbjct: 166 VKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVKV 224
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI PDA+ YF+ +II LSL
Sbjct: 225 PMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLSL 284
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKISIQGAIIQMISHAL 493
I++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L +++GAIIQMISH
Sbjct: 285 IAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHGF 344
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN LP TSGF+GEFM+
Sbjct: 345 VSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMV 404
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
I+ AVK NF +G L + LI+ A+Y+L + K +I+
Sbjct: 405 IMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIY 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAI 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|421539454|ref|ZP_15985615.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 93004]
gi|402321439|gb|EJU56913.1| ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 93004]
Length = 498
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + + +G L+ LV P F+GF Y + WI I Y LG+DG+S+ FI
Sbjct: 31 PLARVLAFMGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFL++SGLI GAF A D +LFY+ FE LIP++
Sbjct: 91 ILNAFITLLVVLAGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVCFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DA+ YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDD 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFVAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----------SIKTSH 796
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAV 336
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+I + +F I ++ L +T N D + G+ P A
Sbjct: 337 IQMISHGFVSAAMFMCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAAF 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 MMLFGMANAGLPATSGFVGEFMV 404
>gi|429745008|ref|ZP_19278462.1| NADH dehydrogenase subunit M [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161597|gb|EKY03983.1| NADH dehydrogenase subunit M [Neisseria sp. oral taxon 020 str.
F0370]
Length = 499
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/407 (52%), Positives = 301/407 (73%), Gaps = 17/407 (4%)
Query: 198 ITSLIGLLS--LVGAPFF------SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTA 249
I +LIG + LV P F SG + + WI NI Y LG+DG+S+ F+ L A
Sbjct: 35 ILALIGAAAGFLVTLPLFTRFDRLSGGFQFQEFHQWIPTLNINYALGVDGISVLFVILNA 94
Query: 250 FITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIG 308
FITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP+++IIG
Sbjct: 95 FITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDALLFYVFFEGMLIPLYLIIG 154
Query: 309 TWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITK--IEQIWL 366
WGG R YA++K FLYTLMGSLLML++M+YL Y + SF I + L I+QI L
Sbjct: 155 VWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLSYQAGGSFAIADFQNLKQIPLGIQQI-L 213
Query: 367 FITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
F+ FF++FA+K+P+WP+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI PDA+
Sbjct: 214 FVAFFLSFAVKVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDAA 273
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKISI 481
+F+ I+ LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L ++
Sbjct: 274 RFFAPAIVALSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFLDGRLNDWAL 333
Query: 482 QGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSL 541
+GAI+QMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN L
Sbjct: 334 KGAIMQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL 393
Query: 542 PGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
P TSGF+GEFM+I+ +V+ NF +G L + LI+ A+Y+L + K +IF
Sbjct: 394 PATSGFVGEFMVIMGSVEVNFWVGALAALTLIYGASYTLWMYKRVIF 440
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 97/186 (52%), Gaps = 23/186 (12%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPL-------FELSNTAL 101
K +P+HTWLPD+ +E PT S ++ A T+ + + P+ F + AL
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDAARFFAPAIVAL 283
Query: 102 SIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSI 153
S+I I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I
Sbjct: 284 SLIAVI------YIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFLDGRLNDWALKGAI 337
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P
Sbjct: 338 MQMISHGFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPAT 396
Query: 214 SGFYSK 219
SGF +
Sbjct: 397 SGFVGE 402
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 21/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISIL-YGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
A++K F+ ++ S ML + L Y G+ + N L I + + + +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLSYQAGGSFAIADFQN---LKQIPLGIQQILFVAFFLS 220
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI- 748
+ K+ + P H W+PD + A +++L+ ++L V Y L + +LP++ + +
Sbjct: 221 FAVKVPMWPVHTWLPDAHVEAPTGGSMVLAA---ITLKVGAYGFL-RFILPILPDAARFF 276
Query: 749 ---LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
++ L++ ++I + A+ Q + K+++AYSSI+HMG + + N +
Sbjct: 277 APAIVALSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFLDGRLNDW---AL 333
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 334 KGAIMQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 389
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 390 NAGLPATSGFVGEFMV 405
>gi|198284334|ref|YP_002220655.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667047|ref|YP_002426996.1| NADH-quinone oxidoreductase subunit M [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248855|gb|ACH84448.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519260|gb|ACK79846.1| NADH-quinone oxidoreductase, M subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 494
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/385 (54%), Positives = 295/385 (76%), Gaps = 7/385 (1%)
Query: 211 PFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIK 263
P F+GF + ++ WI NI+Y LGIDG+SLWFI LT+F+T+++++ S +++
Sbjct: 49 PLFTGFDTHTAAMQYSERVAWIPSLNIFYHLGIDGISLWFILLTSFLTVLVVISSWKNVQ 108
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
+++A++M+AFLI+ GL+IG FCALD +LFY+F+EA LIP+F+IIG WGG R YA IKFF
Sbjct: 109 ERVAQFMAAFLIMEGLMIGVFCALDAILFYVFWEAMLIPMFLIIGVWGGPRRVYATIKFF 168
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYT +GS+LML++++YLY+ S SF++L + + + Q +F+ FF AFA+KIP+WP+
Sbjct: 169 LYTFLGSVLMLVALLYLYFHSGDSFSLLEFQKTPLGMSAQTLIFLAFFFAFAVKIPMWPV 228
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSVILAA+MLK+G YG LR SLPI PDAS+ + L+I LSLI+IIY
Sbjct: 229 HTWLPDAHVEAPTGGSVILAAVMLKMGAYGFLRLSLPIVPDASHKLAWLMIVLSLIAIIY 288
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
++L+A+VQ D+KKLIAYSSIAHMGFVTLG F+ ++I+G IIQM+SH +S+AMF+ +G
Sbjct: 289 VALVAIVQEDMKKLIAYSSIAHMGFVTLGFFVFNSVAIEGGIIQMLSHGFVSAAMFLCVG 348
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY++M TR I +GG+ NV+P F+ ++F++ N LPGTSGF+GEFM++L + N
Sbjct: 349 VLYDRMHTRSIKAYGGVANVMPVFAALMMLFAMGNVGLPGTSGFVGEFMVVLGTYQVNPW 408
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
+ +L +T+LI A Y+L L K +IF
Sbjct: 409 LAILAATSLITGAGYTLWLFKRVIF 433
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFM 86
PL ++A FL K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 200 KTPLGMSAQTLIFLAFFFAFAVKIPMWPVHTWLPDAHVEAPTGGSVIL-AAVMLKMGAYG 258
Query: 87 ITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
R+S P+ ++ L+ ++ + ++ A ++ L+ I+Q D+K++IAYS+++ +G++T+G
Sbjct: 259 FLRLSLPIVPDASHKLAWLMIVLSLIAIIYVALVAIVQEDMKKLIAYSSIAHMGFVTLGF 318
Query: 145 GV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
V A I +++H F A +FL G ++ + H + I+ GG+ MP+ +
Sbjct: 319 FVFNSVAIEGGIIQMLSHGFVSAAMFLCVG-VLYDRMHTRSIKAYGGVANVMPVFAALMM 377
Query: 202 IGLLSLVGAPFFSGFYSK 219
+ + VG P SGF +
Sbjct: 378 LFAMGNVGLPGTSGFVGE 395
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 42/287 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGT----LELQSIFNVIKLNNINCSVLALSLLLI 686
A IK+F+ L S ML + LY +G LE Q + S L L
Sbjct: 163 ATIKFFLYTFLGSVLMLVALLYLYFHSGDSFSLLEFQK-------TPLGMSAQTLIFLAF 215
Query: 687 IVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV 742
+ K+ + P H W+PD + G S+I+ ++ ++ LP+V
Sbjct: 216 FFAFAVKIPMWPVHTWLPDAHVEAPTGGSVILAAVMLKMGAYGF--------LRLSLPIV 267
Query: 743 INWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNN 798
+ ++++L++ ++I + AI Q + K++IAYSSIAHMG +
Sbjct: 268 PDASHKLAWLMIVLSLIAIIYVALVAIVQEDMKKLIAYSSIAHMGFVTL----------G 317
Query: 799 LIIFNSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+FNS + G+ ++++ F F + +L + T + + G+ P A +
Sbjct: 318 FFVFNSVAIEGGIIQMLSHGFVSAAMFLCVGVLYDRM--HTRSIKAYGGVANVMPVFAAL 375
Query: 857 MMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
MM+F G P T GF +F + ++ WL +L + GA
Sbjct: 376 MMLFAMGNVGLPGTSGFVGEFMVVLGTYQVNP-WLAILAATSLITGA 421
>gi|340361200|ref|ZP_08683635.1| NADH-quinone oxidoreductase subunit M [Neisseria macacae ATCC
33926]
gi|339888903|gb|EGQ78323.1| NADH-quinone oxidoreductase subunit M [Neisseria macacae ATCC
33926]
Length = 498
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +LIG L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARVLALIGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++++YL Y + F+I + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAIVYLSYQAG-GFSIEDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DAS YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DASRYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F++AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIF 439
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLNDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGE 401
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 133/289 (46%), Gaps = 21/289 (7%)
Query: 597 SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILY 654
S + L Y+ E L+ L L + + +++S +K F+ ++ S ML I L
Sbjct: 131 SARDALLFYVFFEGMLIPLYLIIGVWGGPRRVYAS---VKLFLYTLMGSLLMLVAIVYLS 187
Query: 655 GITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIII 714
G ++ N+ I V L + + + K+ + P H W+PD + A
Sbjct: 188 YQAGGFSIEDFQNI---KQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGG 244
Query: 715 TLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
+++L+ T KL + + R ++ L + ++++L++ ++I + A+ Q + K++
Sbjct: 245 SMVLAAITLKLGAYGFL-RFILPILPDASRYFAPVIIVLSLIAVIYIGMVALVQTDMKKL 303
Query: 774 IAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN- 831
+AYSSI+HMG + + + I N+ + + +I++ F F I ++ +
Sbjct: 304 VAYSSISHMGFVTLGMFLFINGQLNDW----ALKGAVIQMISHGFVSAAMFMCIGVMYDR 359
Query: 832 -NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+T N D + G+ P A MM+F + AG P T GF +F +
Sbjct: 360 LHTRNIAD----YGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGEFMV 404
>gi|433535913|ref|ZP_20492432.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 77221]
gi|432276334|gb|ELL31392.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Neisseria meningitidis 77221]
Length = 498
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/395 (53%), Positives = 295/395 (74%), Gaps = 14/395 (3%)
Query: 207 LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P F+GF Y + WI I Y LG+DG+S+ FI L AFITL+++L
Sbjct: 46 LVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLAGW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I+K+ A+YM+AFL++SGLI GAF A D +LFY+FFE LIP+++IIG WGG R YA+
Sbjct: 106 EVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYAS 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-QIWLFITFFIAFAIKI 378
+K FLYTLMGSLLML++M+YLYY SF+I+ + + + Q LF FF++FA+K+
Sbjct: 166 VKLFLYTLMGSLLMLVAMVYLYY-QTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVKV 224
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI PDA+ YF+ +II LSL
Sbjct: 225 PMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLSL 284
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKISIQGAIIQMISHAL 493
I++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L +++GAIIQMISH
Sbjct: 285 IAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHGF 344
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +AN LP TSGF+GEFM+
Sbjct: 345 VSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMV 404
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 405 IMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIF 439
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + + +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI---I 687
A++K F+ ++ S ML + LY TG+ F+++ NI L + LL
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGS------FSIVDFQNIKQIPLGVQQLLFAAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ + P H W+PD + A +++L+ T KL + + R ++ + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPIMPDAARYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----AL 332
Query: 806 DSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ +I++ F F I ++ + +T N D + G+ P A MM+F +
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGMA 388
Query: 864 LAGFPPTIGFYAKFFI 879
AG P T GF +F +
Sbjct: 389 NAGLPATSGFVGEFMV 404
>gi|332528763|ref|ZP_08404740.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Hylemonella gracilis ATCC 19624]
gi|332041829|gb|EGI78178.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Hylemonella gracilis ATCC 19624]
Length = 499
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/396 (56%), Positives = 310/396 (78%), Gaps = 9/396 (2%)
Query: 200 SLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
+LIG L+ LV P ++GF + ++ +W+ FN+ Y +G+DG+SLWF+ LTAF+
Sbjct: 34 ALIGALASFLVTLPLWAGFDNSTAAMQFVEQTVWMARFNVNYQVGVDGISLWFVLLTAFM 93
Query: 252 TLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTW 310
T+I+++ + I +++ +YM AFLILSGL+IG F ALDG+LFY+FFEATLIP+++IIG W
Sbjct: 94 TVIVVIAGWEVITERVNQYMGAFLILSGLMIGVFSALDGLLFYVFFEATLIPMYLIIGIW 153
Query: 311 GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITF 370
GG N+ YAA KFFLYTL+GSLL+LI++IYLY S SF+I +WHQL +T Q +F F
Sbjct: 154 GGPNKIYAAFKFFLYTLLGSLLLLIALIYLYLASGGSFDIATWHQLPLTGTAQTLVFFAF 213
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
F AFA+K+P+WP+HTWLPD HVEAPT GS +LAAIMLKLG YG LRFSLPI PDA++ +S
Sbjct: 214 FAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEWS 273
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
L+ITLSL+++IY+ L+A+VQ D+KKL+AYSS+AHMGFVTLG F+ + I G ++QMI+
Sbjct: 274 WLMITLSLVAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTLGFFLFNDLGISGGLVQMIA 333
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H +S AMF+ IG LY++M +R I+++GG+IN +P F+ F ++F++ANC LP T+GF+GE
Sbjct: 334 HGFVSGAMFLCIGVLYDRMHSRQIADYGGVINTMPRFTAFALLFAMANCGLPATAGFVGE 393
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
+M+IL AVK NF +G+L +TALIF AAY+L + K +
Sbjct: 394 WMVILGAVKANFWVGLLAATALIFGAAYTLWMFKRV 429
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 14/206 (6%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W+ PL TA F K +P+HTWLPD +E PT SA++ AA M+
Sbjct: 193 IATWHQLPLTGTAQTLVFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLK 251
Query: 82 AGIFMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R S P+ + S +++ + + ++GL+ ++Q D+K+++AYS+++ +G+
Sbjct: 252 LGAYGFLRFSLPIAPDAAHEWSWLMITLSLVAVIYVGLVALVQQDMKKLVAYSSVAHMGF 311
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LG+S + ++ H F +FL G ++ + H++ I + GG+ M
Sbjct: 312 VTLGFFLFNDLGISG---GLVQMIAHGFVSGAMFLCIG-VLYDRMHSRQIADYGGVINTM 367
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P +L+ ++ G P +GF +
Sbjct: 368 PRFTAFALLFAMANCGLPATAGFVGE 393
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 693 KLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
K+ + P H W+PDV+ G++++ ++L KL + + R + W
Sbjct: 220 KVPMWPVHTWLPDVHVEAPTGGSAVLAAIML----KLGAYGFL-RFSLPIAPDAAHEWSW 274
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC-- 805
+++ L++ ++I + A+ Q + K+++AYSS+AHMG + +FN
Sbjct: 275 LMITLSLVAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTL----------GFFLFNDLGI 324
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
GL +I + F F I +L + ++ ++ + G+ P ++F +
Sbjct: 325 SGGLVQMIAHGFVSGAMFLCIGVLYDRMHSR--QIADYGGVINTMPRFTAFALLFAMANC 382
Query: 866 GFPPTIGFYAKFFI 879
G P T GF ++ +
Sbjct: 383 GLPATAGFVGEWMV 396
>gi|255067303|ref|ZP_05319158.1| NADH dehydrogenase, M subunit [Neisseria sicca ATCC 29256]
gi|255048454|gb|EET43918.1| NADH dehydrogenase, M subunit [Neisseria sicca ATCC 29256]
Length = 498
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 304/410 (74%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +LIG L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARVLALIGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++++YL Y + F+I + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAIVYLSYQAG-GFSIEDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DAS YF+ +II LSLI+++YI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F++AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIF 439
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLNDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGE 401
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 119/253 (47%), Gaps = 16/253 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K F+ ++ S ML I L G ++ N+ I V L + +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAIVYLSYQAGGFSIEDFQNI---KQIPLGVQQLLFVAFFLSF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ T KL + + R ++ L + ++
Sbjct: 221 AVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPILPDASRYFAPVI 279
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSCDSG 808
++L++ +++ + A+ Q + K+++AYSSI+HMG + + + I N+ +
Sbjct: 280 IVLSLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLNDW----ALKGA 335
Query: 809 LFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
+ +I++ F F I ++ + +T N D + G+ P A MM+F + AG
Sbjct: 336 VIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFAMANAG 391
Query: 867 FPPTIGFYAKFFI 879
P T GF +F +
Sbjct: 392 LPATSGFVGEFMV 404
>gi|220934174|ref|YP_002513073.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995484|gb|ACL72086.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 504
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/377 (54%), Positives = 286/377 (75%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI FN+ Y LG+DG+S+ I LT F T+++++ + + I+K++++YM+AFLI+ G + G
Sbjct: 70 WISTFNVNYHLGVDGISMPLILLTTFTTVLVVIAAWEVIQKRVSQYMAAFLIMEGFMNGV 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+FFE LIP+F++IG WGG NR YA +KFFLYT +GS+ ML+++IY+Y
Sbjct: 130 FAALDSVLFYVFFEGMLIPMFLVIGLWGGPNRVYATLKFFLYTFLGSVFMLVALIYMYTR 189
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF IL +HQL + Q+ +F+ F AFA+KIP+WP+HTWLPDAHVEAPT GSV+LA
Sbjct: 190 SG-SFAILDFHQLQLGMTAQVLIFLAFLAAFAVKIPMWPVHTWLPDAHVEAPTGGSVVLA 248
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLK+G YG LRFSLPI PDAS L+IT+SLI+++YI +A+VQ D+KKLIAYSSI
Sbjct: 249 AIMLKIGGYGFLRFSLPITPDASMALDWLLITMSLIAVVYIGFVALVQQDMKKLIAYSSI 308
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLGIF++ + I+GA++QMISH IS+AMF+ +G LY+++ +
Sbjct: 309 AHMGFVTLGIFIVFMIYNNTGNWQGAALGIEGAMVQMISHGFISAAMFLCVGVLYDRLHS 368
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++N +P FS FF++F++AN LPGTSGF+GEFM+IL++ K NF I L +T
Sbjct: 369 RQIADYGGVVNTMPWFSAFFVLFAMANTGLPGTSGFVGEFMVILASFKANFWIAFLAATT 428
Query: 572 LIFSAAYSLCLSKNIIF 588
LI +A Y+L L K ++F
Sbjct: 429 LILAAGYTLWLVKRVVF 445
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 33/248 (13%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L +TA + FL K +P+HTWLPD+ +E PT S ++ AA M+ G + R
Sbjct: 203 LGMTAQVLIFLAFLAAFAVKIPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKIGGYGFLR 261
Query: 90 MS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---- 143
S P+ ++ AL +L + I ++G + ++Q D+K++IAYS+++ +G++T+G
Sbjct: 262 FSLPITPDASMALDWLLITMSLIAVVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGIFIV 321
Query: 144 --------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
LG+ V +++H F A +FL G ++ + H++ I + GG+
Sbjct: 322 FMIYNNTGNWQGAALGIEGAMV---QMISHGFISAAMFLCVG-VLYDRLHSRQIADYGGV 377
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYFNIYYFLGIDGLSL 242
MP ++ ++ G P SGF + K WI + + G +L
Sbjct: 378 VNTMPWFSAFFVLFAMANTGLPGTSGFVGEFMVILASFKANFWIAFLAATTLILAAGYTL 437
Query: 243 WFIPLTAF 250
W + F
Sbjct: 438 WLVKRVVF 445
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 122/267 (45%), Gaps = 22/267 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
A +K+F+ L S FML + +Y +G+ F ++ + + + A L L +
Sbjct: 164 ATLKFFLYTFLGSVFMLVALIYMYTRSGS------FAILDFHQLQLGMTAQVLIFLAFLA 217
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G S+++ ++ + + L I + ++
Sbjct: 218 AFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKIGGYGF--LRFSLPITPDASMALD 275
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
W +L+ +++ +++ A+ Q + K++IAYSSIAHMG + I + +NN +
Sbjct: 276 W--LLITMSLIAVVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGIFIVFMIYNNTGNWQG 333
Query: 805 C----DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ + +I++ F F + +L + ++ ++ + G+ PW + ++F
Sbjct: 334 AALGIEGAMVQMISHGFISAAMFLCVGVLYDRLHSR--QIADYGGVVNTMPWFSAFFVLF 391
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ G P T GF +F + F+
Sbjct: 392 AMANTGLPGTSGFVGEFMVILASFKAN 418
>gi|349608708|ref|ZP_08888131.1| hypothetical protein HMPREF1028_00106 [Neisseria sp. GT4A_CT1]
gi|348611565|gb|EGY61209.1| hypothetical protein HMPREF1028_00106 [Neisseria sp. GT4A_CT1]
Length = 498
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +LIG L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARVLALIGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVMLAGWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++++YL Y F+I + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAIVYLSY-QVGGFSIEDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DAS YF+ +II LSLI+++YI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F++AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIF 439
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGE 401
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 133/289 (46%), Gaps = 21/289 (7%)
Query: 597 SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILY 654
S + L Y+ E L+ L L + + +++S +K F+ ++ S ML I L
Sbjct: 131 SARDALLFYVFFEGMLIPLYLIIGVWGGPRRVYAS---VKLFLYTLMGSLLMLVAIVYLS 187
Query: 655 GITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIII 714
G ++ N+ I V L + + + K+ + P H W+PD + A
Sbjct: 188 YQVGGFSIEDFQNI---KQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGG 244
Query: 715 TLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
+++L+ T KL + + R ++ L + ++++L++ +++ + A+ Q + K++
Sbjct: 245 SMVLAAITLKLGAYGFL-RFILPILPDASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKL 303
Query: 774 IAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN- 831
+AYSSI+HMG + + + + N+ + + +I++ F F I ++ +
Sbjct: 304 VAYSSISHMGFVTLGMFLFVNGQLNDW----ALKGAVIQMISHGFVSAAMFMCIGVMYDR 359
Query: 832 -NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+T N D + G+ P A MM+F + AG P T GF +F +
Sbjct: 360 LHTRNIAD----YGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGEFMV 404
>gi|348617936|ref|ZP_08884470.1| Proton-translocating NADH-quinone oxidoreductase, chain M precursor
[Candidatus Glomeribacter gigasporarum BEG34]
gi|347816880|emb|CCD29126.1| Proton-translocating NADH-quinone oxidoreductase, chain M precursor
[Candidatus Glomeribacter gigasporarum BEG34]
Length = 493
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 284/370 (76%), Gaps = 2/370 (0%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITL-IIILISLDIKKKLAEYMSAFLILSG 278
++ WI FN++Y LG+DG+SLWF+ LTA +T+ ++I D+ ++A Y++AFLILSG
Sbjct: 65 SERLSWIKDFNVHYHLGVDGISLWFVALTALMTVAVVIAAREDMIDRIAHYLAAFLILSG 124
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L++G F A DG+LFYIFFEATLIP+ +IIG WGG R YAA KFFLYTL+ L+++ +
Sbjct: 125 LMMGVFSAQDGLLFYIFFEATLIPMVLIIGIWGGQKRVYAAFKFFLYTLL-GSLLMLLAL 183
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
Y + SF + W +L + Q+ LF FF+AFA+K+P+WP+HTWLPDAHVEAPT G
Sbjct: 184 LYLYTQSGSFALADWQRLPLPMPPQLLLFGAFFMAFAVKVPMWPLHTWLPDAHVEAPTGG 243
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SV+LAAIMLKLG YG LRFSLPI PDAS + +I LSLI++IYI L+A+ Q D+KKL+
Sbjct: 244 SVVLAAIMLKLGAYGFLRFSLPIVPDASRLLAPFVIVLSLIAVIYIGLVALAQSDMKKLV 303
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG F+ ++++GA++QMISH +S AMF+ IG LY+++ +R I+++G
Sbjct: 304 AYSSIAHMGFVTLGFFLFDALAMEGALVQMISHGFVSGAMFLCIGVLYDRIHSRQIADYG 363
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G++NV+P F+ ++FS+ANC LPGTSGF+GEFM+IL+AV+FNF IG+L + LI SAAY
Sbjct: 364 GVVNVMPKFAALSLLFSMANCGLPGTSGFVGEFMVILAAVRFNFWIGLLAALTLILSAAY 423
Query: 579 SLCLSKNIIF 588
+L + K + F
Sbjct: 424 TLWMYKRVQF 433
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +PLHTWLPD+ +E PT S ++ AA M+ G + R S P+ ++ L+ ++
Sbjct: 222 KVPMWPLHTWLPDAHVEAPTGGSVVL-AAIMLKLGAYGFLRFSLPIVPDASRLLAPFVIV 280
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I ++GL+ + Q+D+K+++AYS+++ +G++T+G A ++ +++H F
Sbjct: 281 LSLIAVIYIGLVALAQSDMKKLVAYSSIAHMGFVTLGFFLFDALAMEGALVQMISHGFVS 340
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+FL G ++ + H++ I + GG+ MP SL+ ++ G P SGF +
Sbjct: 341 GAMFLCIG-VLYDRIHSRQIADYGGVVNVMPKFAALSLLFSMANCGLPGTSGFVGE 395
Score = 47.0 bits (110), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 93/197 (47%), Gaps = 30/197 (15%)
Query: 693 KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKI 748
K+ + P H W+PD + A T + L I+ +L ++ LP+V + ++
Sbjct: 222 KVPMWPLHTWLPDAHVEAP--------TGGSVVLAAIMLKLGAYGFLRFSLPIVPDASRL 273
Query: 749 L----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
L ++L++ ++I + A+ Q + K+++AYSSIAHMG + +F++
Sbjct: 274 LAPFVIVLSLIAVIYIGLVALAQSDMKKLVAYSSIAHMGFVTL----------GFFLFDA 323
Query: 805 C--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ L +I++ F F I +L + ++ ++ + G+ P A + ++F
Sbjct: 324 LAMEGALVQMISHGFVSGAMFLCIGVLYDRIHSR--QIADYGGVVNVMPKFAALSLLFSM 381
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 382 ANCGLPGTSGFVGEFMV 398
>gi|261364364|ref|ZP_05977247.1| NADH dehydrogenase, M subunit [Neisseria mucosa ATCC 25996]
gi|288567630|gb|EFC89190.1| NADH dehydrogenase, M subunit [Neisseria mucosa ATCC 25996]
Length = 498
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 302/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +LIG L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARVLALIGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++++YL Y F I + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAIVYLSY-QVGGFAIEDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DAS YF+ +II LSLI+++YI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F++AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIF 439
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGE 401
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 133/289 (46%), Gaps = 21/289 (7%)
Query: 597 SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILY 654
S + L Y+ E L+ L L + + +++S +K F+ ++ S ML I L
Sbjct: 131 SARDALLFYVFFEGMLIPLYLIIGVWGGPRRVYAS---VKLFLYTLMGSLLMLVAIVYLS 187
Query: 655 GITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIII 714
G ++ N+ I V L + + + K+ + P H W+PD + A
Sbjct: 188 YQVGGFAIEDFQNI---KQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGG 244
Query: 715 TLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
+++L+ T KL + + R ++ L + ++++L++ +++ + A+ Q + K++
Sbjct: 245 SMVLAAITLKLGAYGFL-RFILPILPDASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKL 303
Query: 774 IAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN- 831
+AYSSI+HMG + + + + N+ + + +I++ F F I ++ +
Sbjct: 304 VAYSSISHMGFVTLGMFLFVNGQLNDW----ALKGAVIQMISHGFVSAAMFMCIGVMYDR 359
Query: 832 -NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+T N D + G+ P A MM+F + AG P T GF +F +
Sbjct: 360 LHTRNIAD----YGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGEFMV 404
>gi|294670445|ref|ZP_06735327.1| hypothetical protein NEIELOOT_02164 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307909|gb|EFE49152.1| hypothetical protein NEIELOOT_02164 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 500
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/418 (52%), Positives = 301/418 (72%), Gaps = 18/418 (4%)
Query: 188 GLYKYMPITCITSLIGLLS--LVGAPFF------SGFYSKDKKKIWIDYFNIYYFLGIDG 239
G + P+ I + +G L+ LV P F SG + + W+ NI Y LG+DG
Sbjct: 25 GCDRRAPLARILAFVGALAGFLVTLPLFTQFDRLSGGFQFAEFYAWVPALNINYALGVDG 84
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+S+ F+ L AFITL+++L + I+KK+A+YM+AFLI+SGLI GAF A D MLFYIFFE
Sbjct: 85 ISVLFVILNAFITLMVVLAGWEVIQKKVAQYMAAFLIMSGLINGAFAARDAMLFYIFFEG 144
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
LIP+++IIG WGG R YA++K FLYTLMGSLLML++M+YL + + SF I + L
Sbjct: 145 MLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLSHQAGGSFAIADFQNLKQ 204
Query: 359 TK--IEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLR 416
I+QI LF+ FF++FA+K+ +WP+HTWLPDAHVEAPT GS+ LAAI LKLG YG LR
Sbjct: 205 IPLGIQQI-LFVAFFLSFAVKMSMWPVHTWLPDAHVEAPTGGSMALAAITLKLGAYGFLR 263
Query: 417 FSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
F LPI PDAS YF+ II LSLI++IYI ++A+ Q D+KKL+AYSSI+HMGFVTLG+F+
Sbjct: 264 FILPILPDASRYFAPAIIVLSLIAVIYIGMVALAQTDMKKLVAYSSISHMGFVTLGMFLF 323
Query: 477 T-KISIQ-----GAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVF 530
T ++ +Q GAI+QMISH +S+AMF IG +Y+++ +R I+++GG++ V+P F+ F
Sbjct: 324 TNQVQLQPWALKGAIMQMISHGFVSAAMFFCIGVMYDRLHSRNIADYGGVVTVMPKFAAF 383
Query: 531 FIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LP TSGF+GEFM+I+ AV +N +G L + LI AAY+L + K +IF
Sbjct: 384 MMLFAMANAGLPATSGFVGEFMVIMGAVNYNLFVGALAALTLILGAAYTLWMYKRVIF 441
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K + +P+HTWLPD+ +E PT S + A T+ + + P+ + S I+ +
Sbjct: 224 KMSMWPVHTWLPDAHVEAPTGGSMALAAITLKLGAYGFLRFILPILPDASRYFAPAIIVL 283
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---------LGVSAYTVSIFHLMT 158
I ++G++ + Q D+K+++AYS++S +G++T+G L A +I +++
Sbjct: 284 SLIAVIYIGMVALAQTDMKKLVAYSSISHMGFVTLGMFLFTNQVQLQPWALKGAIMQMIS 343
Query: 159 HAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
H F A +F G ++ + H+++I + GG+ MP ++ ++ G P SGF
Sbjct: 344 HGFVSAAMFFCIG-VMYDRLHSRNIADYGGVVTVMPKFAAFMMLFAMANAGLPATSGFVG 402
Query: 219 K 219
+
Sbjct: 403 E 403
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 118/271 (43%), Gaps = 50/271 (18%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
A++K F+ ++ S ML + L G F + N+ L + +L +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLSHQAG-----GSFAIADFQNLKQIPLGIQQILFVAFF 218
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI 743
+ + K+ + P H W+PD + A T ++L I +L ++ +LP++
Sbjct: 219 LSFAVKMSMWPVHTWLPDAHVEAP--------TGGSMALAAITLKLGAYGFLRFILPILP 270
Query: 744 NWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII--------- 790
+ + +++L++ ++I + A+ Q + K+++AYSSI+HMG + +
Sbjct: 271 DASRYFAPAIIVLSLIAVIYIGMVALAQTDMKKLVAYSSISHMGFVTLGMFLFTNQVQLQ 330
Query: 791 --SIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQ 848
++K + +I + +F+ I ++ L ++ N D + G+
Sbjct: 331 PWALKGAIMQMISHGFVSAAMFFCIGVMYDRL-----------HSRNIAD----YGGVVT 375
Query: 849 RNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P A MM+F + AG P T GF +F +
Sbjct: 376 VMPKFAAFMMLFAMANAGLPATSGFVGEFMV 406
>gi|298370363|ref|ZP_06981679.1| NADH dehydrogenase (ubiquinone), M subunit [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281823|gb|EFI23312.1| NADH dehydrogenase (ubiquinone), M subunit [Neisseria sp. oral
taxon 014 str. F0314]
Length = 498
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +LIG L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARVLALIGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++++YL Y + F+I + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAIVYLSYQAG-GFSIEDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DAS YF+ +II LSLI+++YI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG+ NV+P F+ F ++F++AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVANVMPKFAAFMMLFAMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ AVK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIF 439
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLNDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVANVMPKFAAFMMLFAMANAGLPATSGFVGE 401
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 133/289 (46%), Gaps = 21/289 (7%)
Query: 597 SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILY 654
S + L Y+ E L+ L L + + +++S +K F+ ++ S ML I L
Sbjct: 131 SARDALLFYVFFEGMLIPLYLIIGVWGGPRRVYAS---VKLFLYTLMGSLLMLVAIVYLS 187
Query: 655 GITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIII 714
G ++ N+ I V L + + + K+ + P H W+PD + A
Sbjct: 188 YQAGGFSIEDFQNI---KQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGG 244
Query: 715 TLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRM 773
+++L+ T KL + + R ++ L + ++++L++ +++ + A+ Q + K++
Sbjct: 245 SMVLAAITLKLGAYGFL-RFILPILPDASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKL 303
Query: 774 IAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN- 831
+AYSSI+HMG + + + I N+ + + +I++ F F I ++ +
Sbjct: 304 VAYSSISHMGFVTLGMFLFINGQLNDW----ALKGAVIQMISHGFVSAAMFMCIGVMYDR 359
Query: 832 -NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+T N D + G+ P A MM+F + AG P T GF +F +
Sbjct: 360 LHTRNIAD----YGGVANVMPKFAAFMMLFAMANAGLPATSGFVGEFMV 404
>gi|419798179|ref|ZP_14323603.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Neisseria sicca VK64]
gi|385695852|gb|EIG26395.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Neisseria sicca VK64]
Length = 498
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/410 (51%), Positives = 303/410 (73%), Gaps = 16/410 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ + +LIG L+ LV P F+GF Y + WI I Y LG+DG+S+ F+
Sbjct: 31 PLARVLALIGALAGFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YA++K FLYTLMGSLLML++++YL Y F+I + + + Q
Sbjct: 151 LIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAIVYLSY-QVGGFSIEDFQNIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF LPI P
Sbjct: 210 QLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTK 478
DAS YF+ +II LSLI+++YI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L
Sbjct: 270 DASRYFAPVIIVLSLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLND 329
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+++GA+IQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F++AN
Sbjct: 330 WALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMAN 389
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LP TSGF+GEFM+I+ +VK NF +G L + LI+ A+Y+L + K +IF
Sbjct: 390 AGLPATSGFVGEFMVIMGSVKVNFWVGALAALTLIYGASYTLWMYKRVIF 439
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A ++ +++H
Sbjct: 283 SLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAVIQMISH 342
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF +
Sbjct: 343 GFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGE 401
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 119/253 (47%), Gaps = 16/253 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K F+ ++ S ML I L G ++ N+ I V L + +
Sbjct: 164 ASVKLFLYTLMGSLLMLVAIVYLSYQVGGFSIEDFQNI---KQIPLGVQQLLFVAFFLSF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ T KL + + R ++ L + ++
Sbjct: 221 AVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPILPDASRYFAPVI 279
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSCDSG 808
++L++ +++ + A+ Q + K+++AYSSI+HMG + + + + N+ +
Sbjct: 280 IVLSLIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDW----ALKGA 335
Query: 809 LFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
+ +I++ F F I ++ + +T N D + G+ P A MM+F + AG
Sbjct: 336 VIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFAMANAG 391
Query: 867 FPPTIGFYAKFFI 879
P T GF +F +
Sbjct: 392 LPATSGFVGEFMV 404
>gi|345876262|ref|ZP_08828036.1| NADH dehydrogenase subunit M [Neisseria weaveri LMG 5135]
gi|417957641|ref|ZP_12600561.1| NADH dehydrogenase subunit M [Neisseria weaveri ATCC 51223]
gi|343966867|gb|EGV35119.1| NADH dehydrogenase subunit M [Neisseria weaveri LMG 5135]
gi|343967974|gb|EGV36212.1| NADH dehydrogenase subunit M [Neisseria weaveri ATCC 51223]
Length = 500
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/407 (52%), Positives = 304/407 (74%), Gaps = 17/407 (4%)
Query: 198 ITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTA 249
+ + IG L+ LV P F+ F Y + WI NI Y LG+DG+S+ F+ L A
Sbjct: 36 VLAFIGALAGFLVTLPLFAQFDRLNGGYQFTEFHSWIPALNINYALGVDGISVLFVILNA 95
Query: 250 FITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIG 308
FITL+++L + I+K+ A+YM++FL++SGLI GAF A D +LFY+FFE LIP+++IIG
Sbjct: 96 FITLMVVLAGWEVIQKRPAQYMASFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIG 155
Query: 309 TWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITK--IEQIWL 366
WGG R YA++K FLYTL+GSLLML++M+YL Y + SF+I+ + L I+Q+ L
Sbjct: 156 MWGGPRRVYASVKLFLYTLLGSLLMLVAMVYLSYQAGGSFSIVDFQNLKQIPMGIQQL-L 214
Query: 367 FITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
FI FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI PDAS
Sbjct: 215 FIAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFILPILPDAS 274
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----LTKISI 481
YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLG+F+ L ++
Sbjct: 275 RYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFAGNYLNDWAL 334
Query: 482 QGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSL 541
+GAI+QMISH +S+AMF+ IG +Y+++ +R I+++GG++NV+P F+ F ++F +AN L
Sbjct: 335 KGAIVQMISHGFVSAAMFMCIGVMYDRLHSRNIADYGGVVNVMPKFAAFMMLFGMANAGL 394
Query: 542 PGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
P TSGF+GEFM+I+ AV+ NF +G L + LI+ A+Y+L + K +IF
Sbjct: 395 PATSGFVGEFMVIMGAVEVNFWVGALAALTLIYGASYTLWMYKRVIF 441
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 97/180 (53%), Gaps = 11/180 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 225 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFILPILPDASRYFAPVIIVL 284
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--------LGVSAYTVSIFHLMTH 159
I ++G++ ++Q D+K+++AYS++S +G++T+G L A +I +++H
Sbjct: 285 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFAGNYLNDWALKGAIVQMISH 344
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A +F+ G ++ + H+++I + GG+ MP ++ ++ G P SGF +
Sbjct: 345 GFVSAAMFMCIG-VMYDRLHSRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGE 403
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 131/279 (46%), Gaps = 18/279 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISIL-YGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
A++K F+ +L S ML + L Y G+ SI + L I + L + +
Sbjct: 165 ASVKLFLYTLLGSLLMLVAMVYLSYQAGGSF---SIVDFQNLKQIPMGIQQLLFIAFFLS 221
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + +LP++ + +
Sbjct: 222 FAVKVPMFPVHTWLPDAHVEAPTGGSMVLAA---ITLKIGAYGFL-RFILPILPDASRYF 277
Query: 748 --ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++ N +
Sbjct: 278 APVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFAGNYLNDW---AL 334
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
+ +I++ F F I ++ + ++ + + G+ P A MM+F + A
Sbjct: 335 KGAIVQMISHGFVSAAMFMCIGVMYDRLHSR--NIADYGGVVNVMPKFAAFMMLFGMANA 392
Query: 866 GFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
G P T GF +F + E W+ L + + GA
Sbjct: 393 GLPATSGFVGEFMVIMGAVEV-NFWVGALAALTLIYGAS 430
>gi|291613550|ref|YP_003523707.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sideroxydans lithotrophicus ES-1]
gi|291583662|gb|ADE11320.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sideroxydans lithotrophicus ES-1]
Length = 497
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/390 (55%), Positives = 303/390 (77%), Gaps = 8/390 (2%)
Query: 207 LVGAPFFSGF--YSKDKK----KIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P ++GF + D + K WI FNI+Y LG+DG+SL F+ L +F T ++++
Sbjct: 47 LVTIPLYTGFDRMTSDMQFVVLKDWIPRFNIHYHLGVDGISLLFVLLNSFFTPLVVIAGW 106
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
I+K++A+YM+AFLI+SGL+ G F +LD MLFY+F+EA LIP+FIIIG WGG NR YAA
Sbjct: 107 QVIEKRVAQYMAAFLIMSGLVNGVFVSLDAMLFYVFWEAMLIPMFIIIGVWGGPNRVYAA 166
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKI-EQIWLFITFFIAFAIKI 378
+KFFLYTL+GSLLML++++YLY+ S SF+IL +H+++I + QI +FI FF+AF++K+
Sbjct: 167 LKFFLYTLLGSLLMLVALLYLYHQSGGSFDILDYHRMAIPSLTAQILVFIAFFMAFSVKV 226
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P++P+HTWLPDAHVEAPT GSVILAAIMLK+G YG +RFSLPI PDAS+Y + ++I LSL
Sbjct: 227 PMFPVHTWLPDAHVEAPTGGSVILAAIMLKVGAYGFIRFSLPIVPDASHYLAPVMIALSL 286
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAM 498
I+++YI L+A+ Q D+KKL+AYSSI+HMGFVTLG F+ ++GA++QMISH IS A+
Sbjct: 287 IAVVYIGLVALTQSDMKKLVAYSSISHMGFVTLGFFIFNSYGMEGALLQMISHGFISGAL 346
Query: 499 FISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAV 558
F+ IG LY+++ +R I ++GG+ N +P F+ FF++F++AN LPGTSGF+GEFM+I+ AV
Sbjct: 347 FLCIGVLYDRVHSRQIVDYGGVANKMPVFAAFFMLFAMANSGLPGTSGFVGEFMVIMGAV 406
Query: 559 KFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
K NF ++ LIF AAY+L + K +IF
Sbjct: 407 KANFWFAFAAASTLIFGAAYTLWMYKRVIF 436
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 111/194 (57%), Gaps = 8/194 (4%)
Query: 32 AITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRM 90
++TA + F+ + K FP+HTWLPD+ +E PT S ++ AA M+ G + R
Sbjct: 207 SLTAQILVFIAFFMAFSVKVPMFPVHTWLPDAHVEAPTGGSVIL-AAIMLKVGAYGFIRF 265
Query: 91 S-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV-S 147
S P+ + S+ +++ + I ++GL+ + Q+D+K+++AYS++S +G++T+G + +
Sbjct: 266 SLPIVPDASHYLAPVMIALSLIAVVYIGLVALTQSDMKKLVAYSSISHMGFVTLGFFIFN 325
Query: 148 AYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLL 205
+Y + ++ +++H F LFL G ++ + H++ I + GG+ MP+ ++ +
Sbjct: 326 SYGMEGALLQMISHGFISGALFLCIG-VLYDRVHSRQIVDYGGVANKMPVFAAFFMLFAM 384
Query: 206 SLVGAPFFSGFYSK 219
+ G P SGF +
Sbjct: 385 ANSGLPGTSGFVGE 398
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 123/262 (46%), Gaps = 38/262 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--- 687
AA+K+F+ +L S ML + LY +G F+++ + + L +L+ I
Sbjct: 165 AALKFFLYTLLGSLLMLVALLYLYHQSG-----GSFDILDYHRMAIPSLTAQILVFIAFF 219
Query: 688 VGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
+ S K+ + P H W+PD + G S+I+ ++ I+ LP+V
Sbjct: 220 MAFSVKVPMFPVHTWLPDAHVEAPTGGSVILAAIMLKVGAYGF--------IRFSLPIVP 271
Query: 744 NWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNL 799
+ +++ L++ +++ + A+TQ + K+++AYSSI+HMG +
Sbjct: 272 DASHYLAPVMIALSLIAVVYIGLVALTQSDMKKLVAYSSISHMGFVTL----------GF 321
Query: 800 IIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
IFNS + L +I++ F I GA + I + + + +D + G+ + P A
Sbjct: 322 FIFNSYGMEGALLQMISHGF-ISGALFLCIGVLYDRVHSRQIVD-YGGVANKMPVFAAFF 379
Query: 858 MIFMFSLAGFPPTIGFYAKFFI 879
M+F + +G P T GF +F +
Sbjct: 380 MLFAMANSGLPGTSGFVGEFMV 401
>gi|261856538|ref|YP_003263821.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Halothiobacillus neapolitanus c2]
gi|261837007|gb|ACX96774.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Halothiobacillus neapolitanus c2]
Length = 507
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/383 (53%), Positives = 288/383 (75%), Gaps = 16/383 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI F I+Y LG+DG+SL + LT F T+I+I+ + + I++K +Y++AFLI+ G+
Sbjct: 67 ERVAWIPQFGIHYHLGVDGISLPLLILTTFTTVIVIVSAWEVIQEKAHQYLAAFLIMEGM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+ G F ALD ++FY FFE LIP+F+IIG WGG R YA IKFFLYT +GS+ MLI++IY
Sbjct: 127 MNGTFAALDAIVFYFFFEGMLIPMFVIIGIWGGPRRVYATIKFFLYTFLGSVFMLIALIY 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ SF+IL QL +T EQ+ +F+ FFIAFA+KIP+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MYF-KGGSFSILHMQQLPLTLTEQVLIFLAFFIAFAVKIPMWPVHTWLPDAHVEAPTGGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFSLPI PDAS ++II SLI+I+YI +A+VQ D+KKL+A
Sbjct: 246 VILAAIMLKIGGYGFLRFSLPITPDASALLDSMIIAFSLIAIVYIGFVALVQSDMKKLVA 305
Query: 460 YSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISHALISSAMFISIGFL 505
YSSI+HMGFVTLG+F++ +++++GA++QMISH LIS+AMF+SIG L
Sbjct: 306 YSSISHMGFVTLGMFVIFMIAANPLNVSGSGVRLALEGAMVQMISHGLISAAMFLSIGVL 365
Query: 506 YNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
Y+++ +R IS +GG++N +P F+ ++F++AN LPGTSGF+GEFM+IL++ K NF I
Sbjct: 366 YDRLHSREISAYGGVVNTMPWFAAMVVVFAMANVGLPGTSGFVGEFMVILASFKANFWIA 425
Query: 566 VLTSTALIFSAAYSLCLSKNIIF 588
+L + LI A+Y+L + K +IF
Sbjct: 426 LLAALTLIIGASYTLWMVKRVIF 448
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 22/210 (10%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL +T + FL I K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 203 PLTLTEQVLIFLAFFIAFAVKIPMWPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGGYGFL 261
Query: 89 RMSPLFELSNTAL--SIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--- 143
R S +AL S+I+ I ++G + ++Q+D+K+++AYS++S +G++T+G
Sbjct: 262 RFSLPITPDASALLDSMIIAFSLIAIVYIGFVALVQSDMKKLVAYSSISHMGFVTLGMFV 321
Query: 144 --------LGVSAYTV------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
L VS V ++ +++H A +FLS G ++ + H+++I GG+
Sbjct: 322 IFMIAANPLNVSGSGVRLALEGAMVQMISHGLISAAMFLSIG-VLYDRLHSREISAYGGV 380
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP ++ ++ VG P SGF +
Sbjct: 381 VNTMPWFAAMVVVFAMANVGLPGTSGFVGE 410
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 37/292 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVL--ALSLLLIIV 688
A IK+F+ L S FML + +Y G+ F+++ + + ++ L L +
Sbjct: 165 ATIKFFLYTFLGSVFMLIALIYMYFKGGS------FSILHMQQLPLTLTEQVLIFLAFFI 218
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G S+I+ ++ ++ LP+ +
Sbjct: 219 AFAVKIPMWPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--------LRFSLPITPD 270
Query: 745 WQKIL--LILAIFSLI----IGNVSAITQYNFKRMIAYSSIAHMG---LMLFSIISIKTS 795
+L +I+A FSLI IG V A+ Q + K+++AYSSI+HMG L +F I I +
Sbjct: 271 ASALLDSMIIA-FSLIAIVYIGFV-ALVQSDMKKLVAYSSISHMGFVTLGMFVIFMIAAN 328
Query: 796 HNNLI---IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPW 852
N+ + + + + +I++ F I +L + ++ E+ + G+ PW
Sbjct: 329 PLNVSGSGVRLALEGAMVQMISHGLISAAMFLSIGVLYDRLHSR--EISAYGGVVNTMPW 386
Query: 853 CALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
A ++++F + G P T GF +F + F+ W+ LL + +IGA
Sbjct: 387 FAAMVVVFAMANVGLPGTSGFVGEFMVILASFKA-NFWIALLAALTLIIGAS 437
>gi|335044169|ref|ZP_08537194.1| NADH:ubiquinone oxidoreductase subunit 4 [Methylophaga
aminisulfidivorans MP]
gi|333787415|gb|EGL53299.1| NADH:ubiquinone oxidoreductase subunit 4 [Methylophaga
aminisulfidivorans MP]
Length = 503
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/382 (53%), Positives = 284/382 (74%), Gaps = 14/382 (3%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
++ WI F I Y LGIDG SL I LT TL++++ I+ +L Y++AFLI+ G
Sbjct: 64 EELHPWIATFAINYHLGIDGFSLPLIILTTISTLLVVVAGWRVIEYRLNHYLAAFLIMEG 123
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L++ F ALD +LFY+FFEA LIP+F+IIG WGG NR YA IKFFLYT GS+ +LI+++
Sbjct: 124 LMLAVFSALDAILFYVFFEAMLIPLFLIIGIWGGPNRVYATIKFFLYTFFGSVFLLIALL 183
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YL++++ SF++L +H ++++ EQ WLF F IAFA+K+P+WP+HTWLPDAHVEAPT G
Sbjct: 184 YLHHVAG-SFSLLDYHAVTLSMTEQTWLFFAFLIAFAVKVPMWPVHTWLPDAHVEAPTGG 242
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILAAI LK+G YG +RF+LPI PDAS F L+ITLSLI+++YI +A+VQ D+KKLI
Sbjct: 243 SVILAAITLKIGGYGFIRFALPITPDASMVFDWLLITLSLIAVVYIGFVALVQSDLKKLI 302
Query: 459 AYSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLY 506
AYSSIAHMGFVTLG+F++ +I +++GA++QM+SH IS+AMF+++G LY
Sbjct: 303 AYSSIAHMGFVTLGLFIVFRIFFNSATGSGAVLAVEGAMVQMVSHGFISAAMFLAVGVLY 362
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++M TR IS +GG+IN +P F+ F + F++AN LPGTSGF+GEFM+IL+A + NF
Sbjct: 363 DRMHTREISAYGGVINTMPTFTAFAVFFAMANAGLPGTSGFVGEFMVILAAFQANFWFAF 422
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
L +T LI AAY+L + K + F
Sbjct: 423 LAATTLILGAAYTLWMVKRVFF 444
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 102/206 (49%), Gaps = 18/206 (8%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L++T F I K +P+HTWLPD+ +E PT S ++ A T+ G I
Sbjct: 202 LSMTEQTWLFFAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAITLKIGGYGFIRF 261
Query: 90 MSPLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---- 144
P+ ++ +L + I ++G + ++Q+D+K++IAYS+++ +G++T+GL
Sbjct: 262 ALPITPDASMVFDWLLITLSLIAVVYIGFVALVQSDLKKLIAYSSIAHMGFVTLGLFIVF 321
Query: 145 -----------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
V A ++ +++H F A +FL+ G ++ + H ++I GG+ M
Sbjct: 322 RIFFNSATGSGAVLAVEGAMVQMVSHGFISAAMFLAVG-VLYDRMHTREISAYGGVINTM 380
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P ++ ++ G P SGF +
Sbjct: 381 PTFTAFAVFFAMANAGLPGTSGFVGE 406
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 137/309 (44%), Gaps = 34/309 (11%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + I N ++ A IK+F+ S F+L + L+ + G+ L ++ +
Sbjct: 145 LIPLFLIIGIWGGPNRVY---ATIKFFLYTFFGSVFLLIALLYLHHVAGSFSLLD-YHAV 200
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
L+ + L + L + + K+ + P H W+PD + G S+I L + T K+
Sbjct: 201 TLSMTEQTWLFFAFL---IAFAVKVPMWPVHTWLPDAHVEAPTGGSVI---LAAITLKIG 254
Query: 726 LFVII-YRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGL 784
+ I + L I +V +W +L+ L++ +++ A+ Q + K++IAYSSIAHMG
Sbjct: 255 GYGFIRFALPITPDASMVFDW--LLITLSLIAVVYIGFVALVQSDLKKLIAYSSIAHMGF 312
Query: 785 MLFSIISIKTSHNNLIIFNSC---------DSGLFYIITYIFAILGAFGVIILLKNNTCN 835
+ + + I FNS + + ++++ F F + +L +
Sbjct: 313 VTLGLFIVFR-----IFFNSATGSGAVLAVEGAMVQMVSHGFISAAMFLAVGVLYDRM-- 365
Query: 836 KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLI 895
T E+ + G+ P + F + AG P T GF +F + F+ W L
Sbjct: 366 HTREISAYGGVINTMPTFTAFAVFFAMANAGLPGTSGFVGEFMVILAAFQA-NFWFAFLA 424
Query: 896 IMCSLIGAK 904
++GA
Sbjct: 425 ATTLILGAA 433
>gi|334129602|ref|ZP_08503406.1| NADH-quinone oxidoreductase subunit M [Methyloversatilis
universalis FAM5]
gi|333445287|gb|EGK73229.1| NADH-quinone oxidoreductase subunit M [Methyloversatilis
universalis FAM5]
Length = 492
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/401 (51%), Positives = 298/401 (74%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKK------IWIDYFNIYYFLGIDGLSLWFIPLT 248
I +T+L G L V P ++GF + W+ +NI Y LG+DG+S+ F+ L
Sbjct: 36 IALVTALFGFL--VTIPLYTGFDASSASMQFVELMPWVRDYNINYHLGVDGISMPFVILN 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
+FIT+++++ I+ K ++Y +AFLI+SGL+ G F ALDG+LFY+FFEA+LIP++++I
Sbjct: 94 SFITVLVVMAGWTVIEYKPSQYFAAFLIMSGLLNGIFSALDGILFYVFFEASLIPLYLVI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG NR YAA KFFLYTL+GSLLML++++YL++ S SF IL WH+ + Q +F
Sbjct: 154 GVWGGKNRVYAAFKFFLYTLLGSLLMLVALLYLFHKSG-SFAILDWHREPLAMTAQSLIF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
FF +FA+K+P+WP+HTWLPDAHVEAPT GS +LAAI LKLG YG LRFSLPI PDA+
Sbjct: 213 WAFFASFAVKVPMWPVHTWLPDAHVEAPTGGSAVLAAIGLKLGAYGFLRFSLPIVPDAAQ 272
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ ++I LSLI++IYI L+A+ Q D+KKL+AYSSI+HMGFVTLG F+ + I+GA++Q
Sbjct: 273 HFAPVVIGLSLIAVIYIGLVALAQTDMKKLVAYSSISHMGFVTLGFFIFNPLGIEGALVQ 332
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH +S+AMF+ IG LY++M TR I+++GG++N +P F+ F++F++AN LP TSGF
Sbjct: 333 MISHGFVSAAMFLCIGVLYDRMHTRNIADYGGVVNTMPKFAALFLLFAMANAGLPATSGF 392
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+ + A++FNF G +T L+ AAY+L + K ++F
Sbjct: 393 VGEFMVAMGAIQFNFWTGFAAATTLVLGAAYTLWMYKRVVF 433
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W+ +PLA+TA F K +P+HTWLPD+ +E PT SA++ AA + G
Sbjct: 198 WHREPLAMTAQSLIFWAFFASFAVKVPMWPVHTWLPDAHVEAPTGGSAVL-AAIGLKLGA 256
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + + +++ + I ++GL+ + Q D+K+++AYS++S +G++T+
Sbjct: 257 YGFLRFSLPIVPDAAQHFAPVVIGLSLIAVIYIGLVALAQTDMKKLVAYSSISHMGFVTL 316
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G LG+ ++ +++H F A +FL G ++ + H ++I + GG+ MP
Sbjct: 317 GFFIFNPLGIEG---ALVQMISHGFVSAAMFLCIG-VLYDRMHTRNIADYGGVVNTMPKF 372
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
L+ ++ G P SGF +
Sbjct: 373 AALFLLFAMANAGLPATSGFVGE 395
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 136/290 (46%), Gaps = 39/290 (13%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ L L + + KN ++ AA K+F+ +L S ML + L+ +G+
Sbjct: 137 LFYVFFEASLIPLYLVIGVWGGKNRVY---AAFKFFLYTLLGSLLMLVALLYLFHKSGS- 192
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
F ++ + ++ A SL+ SF K+ + P H W+PD + A + +L
Sbjct: 193 -----FAILDWHREPLAMTAQSLIFWAFFASFAVKVPMWPVHTWLPDAHVEAPTGGSAVL 247
Query: 719 STTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+ + L + Y L + LP+V + + +++ L++ ++I + A+ Q + K+++
Sbjct: 248 AA---IGLKLGAYGFL-RFSLPIVPDAAQHFAPVVIGLSLIAVIYIGLVALAQTDMKKLV 303
Query: 775 AYSSIAHMGLM-----LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
AYSSI+HMG + +F+ + I+ + +I + +F I ++
Sbjct: 304 AYSSISHMGFVTLGFFIFNPLGIEGALVQMISHGFVSAAMFLCIGVLYD----------- 352
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ +T N D + G+ P A + ++F + AG P T GF +F +
Sbjct: 353 RMHTRNIAD----YGGVVNTMPKFAALFLLFAMANAGLPATSGFVGEFMV 398
>gi|289207905|ref|YP_003459971.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thioalkalivibrio sp. K90mix]
gi|288943536|gb|ADC71235.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioalkalivibrio sp. K90mix]
Length = 504
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/377 (55%), Positives = 283/377 (75%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI FN+ Y LG+DG+S+ I LT IT+I+I+ + + +K ++A YMSA L++ GL+IG
Sbjct: 70 WIPAFNVNYHLGVDGISMPLILLTTLITVIVIIAAWESVKDRIAYYMSAMLVMEGLMIGM 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A+D +LFY+FFEA LIP+F++IG WGG R YA IKFFLYT +GS+ ML+++I++Y I
Sbjct: 130 FAAMDAVLFYVFFEAMLIPMFLVIGIWGGPRRVYATIKFFLYTFLGSVFMLVALIWMY-I 188
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +H L I QI +F+ FF+AFA+KIP++P+HTWLPDAHVEAPT GSVILA
Sbjct: 189 QSGSFLIQDFHALQIGMTAQILIFLAFFMAFAVKIPMFPVHTWLPDAHVEAPTGGSVILA 248
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLK+G YG LRFSLPI PDAS L+I LSLI+I+YI L+A++Q D+KKLIAYSSI
Sbjct: 249 AIMLKIGGYGFLRFSLPITPDASAVLDTLMIVLSLIAIVYIGLVALIQSDMKKLIAYSSI 308
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ + I G ++QMISH IS+AMF+++G LY+++ +
Sbjct: 309 AHMGFVTLGFFLAFYIYRNTGDWEGASLGIAGGMVQMISHGFISAAMFLAVGVLYDRLHS 368
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R IS++GG++N +P F+ FF++F++AN LPGTSGF+GEFM+IL+A K +F I L +T
Sbjct: 369 RQISDYGGVVNTMPWFAAFFVLFAMANTGLPGTSGFVGEFMVILAAFKADFWIAFLAATT 428
Query: 572 LIFSAAYSLCLSKNIIF 588
LI +A Y+L L K +IF
Sbjct: 429 LILAAGYTLWLVKRVIF 445
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 129/259 (49%), Gaps = 28/259 (10%)
Query: 12 WEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPA 70
W + S+L+ F + + +TA + FL + K FP+HTWLPD+ +E PT
Sbjct: 185 WMYIQSGSFLIQDF-HALQIGMTAQILIFLAFFMAFAVKIPMFPVHTWLPDAHVEAPTGG 243
Query: 71 SALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRI 128
S ++ AA M+ G + R S P+ ++ L ++ + ++ A ++GL+ +IQ+D+K++
Sbjct: 244 SVIL-AAIMLKIGGYGFLRFSLPITPDASAVLDTLMIVLSLIAIVYIGLVALIQSDMKKL 302
Query: 129 IAYSTLSQLGYMTVGLGVSAYTV---------------SIFHLMTHAFFKALLFLSAGSI 173
IAYS+++ +G++T+G ++ Y + +++H F A +FL+ G +
Sbjct: 303 IAYSSIAHMGFVTLGFFLAFYIYRNTGDWEGASLGIAGGMVQMISHGFISAAMFLAVG-V 361
Query: 174 IINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK-------DKKKIWI 226
+ + H++ I + GG+ MP ++ ++ G P SGF + K WI
Sbjct: 362 LYDRLHSRQISDYGGVVNTMPWFAAFFVLFAMANTGLPGTSGFVGEFMVILAAFKADFWI 421
Query: 227 DYFNIYYFLGIDGLSLWFI 245
+ + G +LW +
Sbjct: 422 AFLAATTLILAAGYTLWLV 440
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 120/269 (44%), Gaps = 26/269 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+F+ L S FML + +Y +G+ +Q F+ ++ I + L L +
Sbjct: 164 ATIKFFLYTFLGSVFMLVALIWMYIQSGSFLIQD-FHALQ---IGMTAQILIFLAFFMAF 219
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + G S+I+ ++ ++ LP+ +
Sbjct: 220 AVKIPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--------LRFSLPITPDAS 271
Query: 747 KIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+L ++L++ +++ + A+ Q + K++IAYSSIAHMG + + N +
Sbjct: 272 AVLDTLMIVLSLIAIVYIGLVALIQSDMKKLIAYSSIAHMGFVTLGFFLAFYIYRNTGDW 331
Query: 803 NSCD----SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
G+ +I++ F F + +L + ++ ++ + G+ PW A +
Sbjct: 332 EGASLGIAGGMVQMISHGFISAAMFLAVGVLYDRLHSR--QISDYGGVVNTMPWFAAFFV 389
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+F + G P T GF +F + F+
Sbjct: 390 LFAMANTGLPGTSGFVGEFMVILAAFKAD 418
>gi|225024107|ref|ZP_03713299.1| hypothetical protein EIKCOROL_00975 [Eikenella corrodens ATCC
23834]
gi|224943132|gb|EEG24341.1| hypothetical protein EIKCOROL_00975 [Eikenella corrodens ATCC
23834]
Length = 500
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/417 (51%), Positives = 299/417 (71%), Gaps = 16/417 (3%)
Query: 188 GLYKYMPITCITSLIGLLS--LVGAPFF------SGFYSKDKKKIWIDYFNIYYFLGIDG 239
G + P+ I + +G L+ LV P F SG + + WI NI Y LG+DG
Sbjct: 25 GCDRRAPLARILAFVGALAGFLVTLPLFTQFDRLSGGFQFAEFYAWIPALNINYALGVDG 84
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+S+ F+ L AFITL+++L + I+KK+A+YM+AFLI+SGLI GAF A D MLFYIFFE
Sbjct: 85 ISVLFVILNAFITLMVVLAGWEVIQKKVAQYMAAFLIMSGLINGAFVARDAMLFYIFFEG 144
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQL-S 357
LIP+++IIG WGG R YA++K FLYTLMGSLLML++++YL + SF I + +
Sbjct: 145 MLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVALVYLSLQTGGSFAIEDFQNIKQ 204
Query: 358 ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRF 417
I Q LF FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LKLG YG LRF
Sbjct: 205 IPLFTQQILFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRF 264
Query: 418 SLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLT 477
LPI PDAS YF+ II LSLI++IYI ++A+ Q D+KKL+AYSSI+HMGFVTLG+F+ T
Sbjct: 265 ILPILPDASRYFAPAIIVLSLIAVIYIGMVALAQTDMKKLVAYSSISHMGFVTLGMFLFT 324
Query: 478 -KISIQ-----GAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
++ +Q GAI+QMISH +S+AMF IG +Y+++ +R I+++GG++ V+P F+ F
Sbjct: 325 NQVQLQPWALKGAIMQMISHGFVSAAMFFCIGVMYDRLHSRNIADYGGVVTVMPKFAAFM 384
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LP TSGF+GEFM+I+ AV +N +G L + LI AAY+L + K +IF
Sbjct: 385 MLFAMANAGLPATSGFVGEFMVIMGAVNYNLFVGALAALTLILGAAYTLWMYKRVIF 441
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S I+ +
Sbjct: 224 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPAIIVL 283
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---------LGVSAYTVSIFHLMT 158
I ++G++ + Q D+K+++AYS++S +G++T+G L A +I +++
Sbjct: 284 SLIAVIYIGMVALAQTDMKKLVAYSSISHMGFVTLGMFLFTNQVQLQPWALKGAIMQMIS 343
Query: 159 HAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
H F A +F G ++ + H+++I + GG+ MP ++ ++ G P SGF
Sbjct: 344 HGFVSAAMFFCIG-VMYDRLHSRNIADYGGVVTVMPKFAAFMMLFAMANAGLPATSGFVG 402
Query: 219 K 219
+
Sbjct: 403 E 403
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 119/262 (45%), Gaps = 32/262 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITG-TLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
A++K F+ ++ S ML + L TG + ++ N+ ++ +L + L
Sbjct: 164 ASVKLFLYTLMGSLLMLVALVYLSLQTGGSFAIEDFQNIKQIPLFTQQILFAAFFL---S 220
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQKI 748
+ K+ + P H W+PD + A +++L+ T KL + + R ++ L +
Sbjct: 221 FAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFL-RFILPILPDASRYFAPA 279
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII-----------SIKTSHN 797
+++L++ ++I + A+ Q + K+++AYSSI+HMG + + ++K +
Sbjct: 280 IIVLSLIAVIYIGMVALAQTDMKKLVAYSSISHMGFVTLGMFLFTNQVQLQPWALKGAIM 339
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
+I + +F+ I ++ L ++ N D + G+ P A M
Sbjct: 340 QMISHGFVSAAMFFCIGVMYDRL-----------HSRNIAD----YGGVVTVMPKFAAFM 384
Query: 858 MIFMFSLAGFPPTIGFYAKFFI 879
M+F + AG P T GF +F +
Sbjct: 385 MLFAMANAGLPATSGFVGEFMV 406
>gi|381402256|ref|ZP_09927130.1| NADH:ubiquinone oxidoreductase subunit M [Kingella kingae PYKK081]
gi|380832786|gb|EIC12680.1| NADH:ubiquinone oxidoreductase subunit M [Kingella kingae PYKK081]
Length = 504
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/416 (51%), Positives = 301/416 (72%), Gaps = 22/416 (5%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ I +LIG ++ LV P F+ F Y + WI N+ Y LG+DG+S+ F+
Sbjct: 31 PLARILALIGAVAGFLVTLPLFTHFDRANAGYQFTELHAWIPALNLNYALGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFEA LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEAMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQL-SITKIEQ 363
+I+G WGG R YAA+K FLYTL+GSLLML+++IYL +N SF I L I Q
Sbjct: 151 LIVGMWGGPRRVYAAMKLFLYTLLGSLLMLVALIYLGTQAN-SFAITDLQNLKQIPMGAQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
+FI FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI P
Sbjct: 210 QLVFIAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFVLPIVP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI---- 479
DAS YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLGIF+ + +
Sbjct: 270 DASRYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGQ 329
Query: 480 -------SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFI 532
++GAI+QMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F +
Sbjct: 330 LGELNDWGLKGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMM 389
Query: 533 IFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+F +AN LP TSGF+GEFM+I+ AV+ N IG L + LI+ A+Y+L + K IF
Sbjct: 390 LFGMANAGLPATSGFVGEFMVIMGAVEVNLWIGALAALTLIYGASYTLWMYKRTIF 445
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFVLPIVPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVS--------------I 153
I ++G++ ++Q D+K+++AYS++S +G++T+G+ + + S I
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGQLGELNDWGLKGAI 342
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P
Sbjct: 343 VQMISHGFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPAT 401
Query: 214 SGFYSK 219
SGF +
Sbjct: 402 SGFVGE 407
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 137/286 (47%), Gaps = 27/286 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNI-NCSVLALSLLLIIVG 689
AA+K F+ +L S ML ++++Y GT + F + L N+ + A L+ I
Sbjct: 164 AAMKLFLYTLLGSLLML--VALIY--LGTQA--NSFAITDLQNLKQIPMGAQQLVFIAFF 217
Query: 690 LSF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
LSF K+ + P H W+PD + A +++L+ ++L + Y L + +LP+V + +
Sbjct: 218 LSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAA---ITLKIGAYGFL-RFVLPIVPDASR 273
Query: 748 ----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTS-HNNLIIF 802
++++L++ ++I + A+ Q + K+++AYSSI+HMG + I L
Sbjct: 274 YFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGQLGEL 333
Query: 803 NS--CDSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMM 858
N + +I++ F F I ++ + +T N D + G+ P A MM
Sbjct: 334 NDWGLKGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMM 389
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F + AG P T GF +F + E +W+ L + + GA
Sbjct: 390 LFGMANAGLPATSGFVGEFMVIMGAVEV-NLWIGALAALTLIYGAS 434
>gi|387128690|ref|YP_006297295.1| NADH-ubiquinone oxidoreductase subunit M [Methylophaga sp. JAM1]
gi|386275752|gb|AFI85650.1| NADH-ubiquinone oxidoreductase chain M [Methylophaga sp. JAM1]
Length = 506
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/411 (52%), Positives = 291/411 (70%), Gaps = 18/411 (4%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
I+ T L+ L +G S ++ WI FNI Y+LGIDG S+ I LT T++
Sbjct: 38 ISLTTMLLSFLLYIGFDVTSHEMQFVERLSWIATFNIEYYLGIDGFSMPLIILTTVSTVL 97
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
+++ I+ + A+YM+AFLI+ GL++G F +LD +LFY+FFEA LIP+F++IG WGG
Sbjct: 98 VVIAGWQVIQDRAAQYMAAFLIMEGLMLGVFASLDAILFYLFFEAMLIPLFLVIGIWGGP 157
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIA 373
NR YA IKFFLYT GS+ +LI+++YL + SF IL +H +S+T +QIW+F+ F IA
Sbjct: 158 NRVYATIKFFLYTFFGSVFLLIALLYLQF-QAGSFTILDFHTVSLTLTQQIWIFLAFLIA 216
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
FA+KIP+WP+HTWLPDAHVEAPT GSVILAAI LK+G YGLLRF+LPI PDAS L+
Sbjct: 217 FAVKIPMWPVHTWLPDAHVEAPTGGSVILAAITLKIGGYGLLRFALPITPDASMTLDWLV 276
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKIS------------- 480
I LSLI+I+YI +A+ Q D+KKLIAYSSIAHMGFVTLG+F++ +I+
Sbjct: 277 IGLSLIAIVYIGFVALAQSDLKKLIAYSSIAHMGFVTLGLFIIFRITANEAITIGIGNGQ 336
Query: 481 ---IQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
I+GA++QMISH I++AMF+S+G LY++M TR IS +GG+ N +P F+ + F++A
Sbjct: 337 VLAIEGAMVQMISHGFIAAAMFLSVGVLYDRMHTREISAYGGVANSMPKFTALAVFFAMA 396
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
N LPGTSGF+GEFM+IL+A + NF L +T LI AAY+L + K + F
Sbjct: 397 NAGLPGTSGFVGEFMVILAAFQANFWYAFLAATTLILGAAYTLWMVKRVFF 447
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 22/210 (10%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L +T + FL I K +P+HTWLPD+ +E PT S ++ A T+ G ++
Sbjct: 201 LTLTQQIWIFLAFLIAFAVKIPMWPVHTWLPDAHVEAPTGGSVILAAITLKIGGYGLLRF 260
Query: 90 MSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV-- 146
P+ ++ L +++ + I ++G + + Q+D+K++IAYS+++ +G++T+GL +
Sbjct: 261 ALPITPDASMTLDWLVIGLSLIAIVYIGFVALAQSDLKKLIAYSSIAHMGFVTLGLFIIF 320
Query: 147 -----SAYTVSI------------FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
A T+ I +++H F A +FLS G ++ + H ++I GG+
Sbjct: 321 RITANEAITIGIGNGQVLAIEGAMVQMISHGFIAAAMFLSVG-VLYDRMHTREISAYGGV 379
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP ++ ++ G P SGF +
Sbjct: 380 ANSMPKFTALAVFFAMANAGLPGTSGFVGE 409
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 143/311 (45%), Gaps = 34/311 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQS-IFNV 668
L+ L L + I N ++ A IK+F+ S F+L I++LY L+ Q+ F +
Sbjct: 144 LIPLFLVIGIWGGPNRVY---ATIKFFLYTFFGSVFLL--IALLY-----LQFQAGSFTI 193
Query: 669 IKLNNINCSVLA--LSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTP 722
+ + ++ ++ L ++ + K+ + P H W+PD + G S+I L + T
Sbjct: 194 LDFHTVSLTLTQQIWIFLAFLIAFAVKIPMWPVHTWLPDAHVEAPTGGSVI---LAAITL 250
Query: 723 KLSLFVII-YRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
K+ + ++ + L I + ++W +++ L++ +++ A+ Q + K++IAYSSIAH
Sbjct: 251 KIGGYGLLRFALPITPDASMTLDW--LVIGLSLIAIVYIGFVALAQSDLKKLIAYSSIAH 308
Query: 782 MGLMLFSI-ISIKTSHNNLIIFN-------SCDSGLFYIITYIFAILGAFGVIILLKNNT 833
MG + + I + + N I + + + +I++ F F + +L +
Sbjct: 309 MGFVTLGLFIIFRITANEAITIGIGNGQVLAIEGAMVQMISHGFIAAAMFLSVGVLYDRM 368
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
T E+ + G+ P + + F + AG P T GF +F + F+ W
Sbjct: 369 --HTREISAYGGVANSMPKFTALAVFFAMANAGLPGTSGFVGEFMVILAAFQA-NFWYAF 425
Query: 894 LIIMCSLIGAK 904
L ++GA
Sbjct: 426 LAATTLILGAA 436
>gi|114321107|ref|YP_742790.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Alkalilimnicola ehrlichii MLHE-1]
gi|114227501|gb|ABI57300.1| NADH dehydrogenase subunit M [Alkalilimnicola ehrlichii MLHE-1]
Length = 501
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/381 (53%), Positives = 283/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+++ W+ +YY LG+DG+S+ I LT F TL++++ + IK + ++Y++AFLI+ G+
Sbjct: 65 EQREWVSALQVYYHLGVDGISMPLIILTTFCTLLVVIAGWEVIKYRPSQYLAAFLIMEGI 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFEA L+P+F+IIG WGG+NR YA IKFFLYT +GS+LML+++IY
Sbjct: 125 MVGVFSALDAILFYVFFEAMLVPMFLIIGIWGGANRIYATIKFFLYTFLGSVLMLVAVIY 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
L + SF IL H L + Q+ +F+ F AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 185 LR-LQAGSFGILDMHGLDLGLTAQVLIFLAFLGAFAVKVPMWPVHTWLPDAHVEAPTGGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFSLPI P+AS LII +SL+++ YI L+AMVQ D+KKLIA
Sbjct: 244 VILAAIMLKIGGYGFLRFSLPITPEASMTLDWLIILMSLVAVAYIGLVAMVQKDMKKLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F++ +I ++QG ++QMISH IS+AMF+ +G LY+
Sbjct: 304 YSSIAHMGFVTLGFFLIFQIMANGGGEQGGMLALQGGMVQMISHGFISAAMFLCVGVLYD 363
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M +R I+++GG+IN +P F FF++F++AN LPGTSGF+GEFM+IL+A + NF +
Sbjct: 364 RMHSRQIADYGGVINTMPWFGAFFVLFAMANAGLPGTSGFVGEFMVILAAFQANFWYAFV 423
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
T L+ AAYSL + K +IF
Sbjct: 424 AGTTLVLGAAYSLWMVKRVIF 444
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 111/208 (53%), Gaps = 22/208 (10%)
Query: 31 LAITANLKAFLINRIGAMA-KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
L +TA + FL +GA A K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 202 LGLTAQVLIFL-AFLGAFAVKVPMWPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGGYGFL 259
Query: 89 RMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-- 144
R S P+ E S T +I+ + + ++GL+ ++Q D+K++IAYS+++ +G++T+G
Sbjct: 260 RFSLPITPEASMTLDWLIILMSLVAVAYIGLVAMVQKDMKKLIAYSSIAHMGFVTLGFFL 319
Query: 145 -------------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYK 191
G+ A + +++H F A +FL G ++ + H++ I + GG+
Sbjct: 320 IFQIMANGGGEQGGMLALQGGMVQMISHGFISAAMFLCVG-VLYDRMHSRQIADYGGVIN 378
Query: 192 YMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP ++ ++ G P SGF +
Sbjct: 379 TMPWFGAFFVLFAMANAGLPGTSGFVGE 406
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 136/290 (46%), Gaps = 31/290 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQS-IFNV 668
L+ + L + I N I+ A IK+F+ L S ML ++++Y L LQ+ F +
Sbjct: 145 LVPMFLIIGIWGGANRIY---ATIKFFLYTFLGSVLML--VAVIY-----LRLQAGSFGI 194
Query: 669 IKLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTP 722
+ ++ ++ + A L+ + + + K+ + P H W+PD + G S+I+ ++
Sbjct: 195 LDMHGLDLGLTAQVLIFLAFLGAFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAIMLKIG 254
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
+ + L I + ++W IL+ L + I + A+ Q + K++IAYSSIAHM
Sbjct: 255 GYGF--LRFSLPITPEASMTLDWLIILMSLVAVAYI--GLVAMVQKDMKKLIAYSSIAHM 310
Query: 783 G------LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK 836
G ++F I++ ++ + G+ +I++ F F + +L + ++
Sbjct: 311 GFVTLGFFLIFQIMANGGGEQGGML--ALQGGMVQMISHGFISAAMFLCVGVLYDRMHSR 368
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET 886
++ + G+ PW ++F + AG P T GF +F + F+
Sbjct: 369 --QIADYGGVINTMPWFGAFFVLFAMANAGLPGTSGFVGEFMVILAAFQA 416
>gi|78485174|ref|YP_391099.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thiomicrospira crunogena XCL-2]
gi|78363460|gb|ABB41425.1| NADH dehydrogenase I chain M [Thiomicrospira crunogena XCL-2]
Length = 504
Score = 421 bits (1083), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/381 (53%), Positives = 284/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI FNI Y+LG+DGLS+ + LT F +++I + D IK+++ +YM AF+I+ GL
Sbjct: 66 EKASWISQFNIQYYLGVDGLSMPLVLLTTFTQILVIASAWDVIKERVEQYMGAFMIMQGL 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALDG+LFY+F+EA LIP+FI+IG WGG +R YA IKFFLYT GS+ ML++ +Y
Sbjct: 126 MIGVFVALDGILFYVFWEALLIPMFIVIGKWGGQDRVYATIKFFLYTFFGSVFMLVAFLY 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ S SF+IL +H + + QI +F+ F IAFA+K+P++P+HTWLPDAHV+APT GS
Sbjct: 186 MYFQSG-SFSILDFHAMHLGSTAQILIFLAFLIAFAVKVPMFPVHTWLPDAHVQAPTAGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG +RFSLPI PDAS L+I LSLI+I YI L+AMVQ D+KKL+A
Sbjct: 245 VVLAAIMLKMGGYGFVRFSLPITPDASMELDWLVIALSLIAIFYIGLVAMVQKDMKKLVA 304
Query: 460 YSSIAHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSI+HMGFVT+G+F++ + I ++GA+IQMISH IS AMF+ IG LY+
Sbjct: 305 YSSISHMGFVTIGMFLVYDIVQNTGSIQGSMIGMEGAMIQMISHGFISGAMFLMIGVLYD 364
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR IS +GG++N +P F F ++F++AN LPGTSGF+GEFM+IL++ K N G++
Sbjct: 365 RMHTREISAYGGVVNTMPWFGFFAVLFAMANAGLPGTSGFVGEFMVILASFKANVWYGIV 424
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
++ LI AAY+L + K + F
Sbjct: 425 AASTLIIGAAYTLWMVKRVFF 445
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 109/207 (52%), Gaps = 20/207 (9%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L TA + FL I K FP+HTWLPD+ ++ PT A +++ AA M+ G + R
Sbjct: 203 LGSTAQILIFLAFLIAFAVKVPMFPVHTWLPDAHVQAPT-AGSVVLAAIMLKMGGYGFVR 261
Query: 90 MS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS 147
S P+ ++ L +++ + I F++GL+ ++Q D+K+++AYS++S +G++T+G+ +
Sbjct: 262 FSLPITPDASMELDWLVIALSLIAIFYIGLVAMVQKDMKKLVAYSSISHMGFVTIGMFLV 321
Query: 148 AYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
V ++ +++H F +FL G ++ + H ++I GG+
Sbjct: 322 YDIVQNTGSIQGSMIGMEGAMIQMISHGFISGAMFLMIG-VLYDRMHTREISAYGGVVNT 380
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 381 MPWFGFFAVLFAMANAGLPGTSGFVGE 407
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 135/282 (47%), Gaps = 21/282 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+F+ S FML +Y +G+ + F+ + L + ++ L+ L +
Sbjct: 164 ATIKFFLYTFFGSVFMLVAFLYMYFQSGSFSILD-FHAMHLGSTAQILIFLAFL---IAF 219
Query: 691 SFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVII-YRLLIKCLLPLVINWQKI 748
+ K+ + P H W+PD + Q + +L + K+ + + + L I + ++W I
Sbjct: 220 AVKVPMFPVHTWLPDAHVQAPTAGSVVLAAIMLKMGGYGFVRFSLPITPDASMELDWLVI 279
Query: 749 LL-ILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIKTSHNNLII 801
L ++AIF + + A+ Q + K+++AYSSI+HMG +++ I+ S +I
Sbjct: 280 ALSLIAIFYI---GLVAMVQKDMKKLVAYSSISHMGFVTIGMFLVYDIVQNTGSIQGSMI 336
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ + +I++ F I GA ++I + + + T E+ + G+ PW ++F
Sbjct: 337 --GMEGAMIQMISHGF-ISGAMFLMIGVLYDRMH-TREISAYGGVVNTMPWFGFFAVLFA 392
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
+ AG P T GF +F + F+ +W ++ +IGA
Sbjct: 393 MANAGLPGTSGFVGEFMVILASFKA-NVWYGIVAASTLIIGA 433
>gi|269468287|gb|EEZ79969.1| NADH:ubiquinone oxidoreductase, chain M [uncultured SUP05 cluster
bacterium]
Length = 510
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/391 (53%), Positives = 288/391 (73%), Gaps = 28/391 (7%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI F+I Y +G+DG+S+ I LT F T+++++ + I+++ A YM+AFL++ GL
Sbjct: 62 EKTSWISQFDINYHIGVDGISMPLIILTTFSTILVLIAGWEVIQRRTAHYMAAFLMMEGL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IIG F ALDG+LFY F+EA+LIP+ +IIG WGG NR YAAIKFFLYT +GS++ML+S+IY
Sbjct: 122 IIGVFSALDGILFYAFWEASLIPMLLIIGVWGGDNRVYAAIKFFLYTFLGSVMMLVSLIY 181
Query: 340 LYYISNK--SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
+Y NK SF+IL H L +T EQ ++F FF+AFA+K+P++P+HTWLPDAHV+APT
Sbjct: 182 MY---NKGGSFSILDMHNLELTLAEQSYIFWAFFVAFAVKVPMFPVHTWLPDAHVQAPTG 238
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSVILAAIMLK+G YG RFSLPI PDAS FS+++I LSLI+I+YI +A+VQ D+KKL
Sbjct: 239 GSVILAAIMLKMGGYGFFRFSLPITPDASLQFSDVVIALSLIAIVYIGFVALVQRDMKKL 298
Query: 458 IAYSSIAHMGFVTLGIFMLTKI----------------------SIQGAIIQMISHALIS 495
IAYSSI+HMGFVTLG+F L I ++GA++QMISH IS
Sbjct: 299 IAYSSISHMGFVTLGVFALFSILKMGADGNLVSLNGGSIDGALLGLEGAMVQMISHGFIS 358
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIIL 555
+AMF+ +G LY+++ +R IS +GG+IN +P F+ F ++F++AN LPGTSGF+GEFM+IL
Sbjct: 359 AAMFLVVGVLYDRLHSREISTYGGVINSMPKFTGFAVLFAMANAGLPGTSGFVGEFMVIL 418
Query: 556 SAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
AV+ N VL +T LI A+Y+L + K +
Sbjct: 419 GAVQANIWYAVLAATTLIVGASYTLWMVKRV 449
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 30/198 (15%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K FP+HTWLPD+ ++ PT S ++ AA M+ G + R S P+ ++ S +++
Sbjct: 218 KVPMFPVHTWLPDAHVQAPTGGSVIL-AAIMLKMGGYGFFRFSLPITPDASLQFSDVVIA 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---------LGVSAYTVSI---- 153
+ I ++G + ++Q D+K++IAYS++S +G++T+G +G VS+
Sbjct: 277 LSLIAIVYIGFVALVQRDMKKLIAYSSISHMGFVTLGVFALFSILKMGADGNLVSLNGGS 336
Query: 154 ------------FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
+++H F A +FL G ++ + H+++I GG+ MP ++
Sbjct: 337 IDGALLGLEGAMVQMISHGFISAAMFLVVG-VLYDRLHSREISTYGGVINSMPKFTGFAV 395
Query: 202 IGLLSLVGAPFFSGFYSK 219
+ ++ G P SGF +
Sbjct: 396 LFAMANAGLPGTSGFVGE 413
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 143/317 (45%), Gaps = 38/317 (11%)
Query: 609 ELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNV 668
L+ + L + + N ++ AAIK+F+ L S ML + +Y G+ F++
Sbjct: 141 SLIPMLLIIGVWGGDNRVY---AAIKFFLYTFLGSVMMLVSLIYMYNKGGS------FSI 191
Query: 669 IKLNNINCSVLALSLLL--IIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTP 722
+ ++N+ ++ S + V + K+ + P H W+PD + G S+I+ ++
Sbjct: 192 LDMHNLELTLAEQSYIFWAFFVAFAVKVPMFPVHTWLPDAHVQAPTGGSVILAAIMLKMG 251
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
F R + + + +++ L++ +++ A+ Q + K++IAYSSI+HM
Sbjct: 252 GYGFF----RFSLPITPDASLQFSDVVIALSLIAIVYIGFVALVQRDMKKLIAYSSISHM 307
Query: 783 GLM------LFSIISIKTSHNNLIIFN--SCDSGLF-------YIITYIFAILGAFGVII 827
G + LFSI+ + + NL+ N S D L +I++ F F V+
Sbjct: 308 GFVTLGVFALFSILKMG-ADGNLVSLNGGSIDGALLGLEGAMVQMISHGFISAAMFLVVG 366
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+L + ++ E+ + G+ P ++F + AG P T GF +F + +
Sbjct: 367 VLYDRLHSR--EISTYGGVINSMPKFTGFAVLFAMANAGLPGTSGFVGEFMVILGAVQA- 423
Query: 888 KIWLLLLIIMCSLIGAK 904
IW +L ++GA
Sbjct: 424 NIWYAVLAATTLIVGAS 440
>gi|333376377|ref|ZP_08468160.1| NADH-quinone oxidoreductase subunit M [Kingella kingae ATCC 23330]
gi|332968219|gb|EGK07296.1| NADH-quinone oxidoreductase subunit M [Kingella kingae ATCC 23330]
Length = 505
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/417 (52%), Positives = 301/417 (72%), Gaps = 23/417 (5%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ I +LIG ++ LV P F+ F Y + WI N+ Y LG+DG+S+ F+
Sbjct: 31 PLARILALIGAVAGFLVTLPLFTHFDRANAGYQFTELHAWIPALNLNYALGVDGISVLFV 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY+FFEA LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEAMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQL-SITKIEQ 363
+I+G WGG R YAA+K FLYTL+GSLLML+++IYL +N SF I L I Q
Sbjct: 151 LIVGMWGGPRRVYAAMKLFLYTLLGSLLMLVALIYLGAQAN-SFAITDLQNLKQIPMGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
+FI FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI P
Sbjct: 210 QLVFIAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFVLPIVP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI---- 479
DAS YF+ +II LSLI++IYI ++A+VQ D+KKL+AYSSI+HMGFVTLGIF+ + +
Sbjct: 270 DASRYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGLFSGN 329
Query: 480 --------SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
++GAIIQMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F
Sbjct: 330 PLGELNAWGLKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFM 389
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F +AN LP TSGF+GEFM+I+ AV+ N IG L + LI+ A+Y+L + K IF
Sbjct: 390 MLFGMANAGLPATSGFVGEFMVIMGAVEVNLWIGALAALTLIYGASYTLWMYKRTIF 446
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFVLPIVPDASRYFAPVIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---------------LGVSAYTVS 152
I ++G++ ++Q D+K+++AYS++S +G++T+G L +
Sbjct: 283 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGLFSGNPLGELNAWGLKGA 342
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
I +++H F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P
Sbjct: 343 IIQMISHGFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPA 401
Query: 213 FSGFYSK 219
SGF +
Sbjct: 402 TSGFVGE 408
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 22/284 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K F+ +L S ML + L + + + N L I V L + +
Sbjct: 164 AAMKLFLYTLLGSLLMLVALIYLGAQANSFAITDLQN---LKQIPMGVQQLVFIAFFLSF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + +LP+V + +
Sbjct: 221 AVKVPMFPVHTWLPDAHVEAPTGGSMVLAA---ITLKIGAYGFL-RFVLPIVPDASRYFA 276
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI--ISIKTSHNNLIIFNS 804
++++L++ ++I + A+ Q + K+++AYSSI+HMG + I S S N L N+
Sbjct: 277 PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGLFSGNPLGELNA 336
Query: 805 --CDSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ +I++ F F I ++ + +T N D + G+ P A MM+F
Sbjct: 337 WGLKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLF 392
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + E +W+ L + + GA
Sbjct: 393 GMANAGLPATSGFVGEFMVIMGAVEV-NLWIGALAALTLIYGAS 435
>gi|345864604|ref|ZP_08816803.1| NADH-quinone oxidoreductase subunit M [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124301|gb|EGW54182.1| NADH-quinone oxidoreductase subunit M [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 504
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/408 (51%), Positives = 295/408 (72%), Gaps = 21/408 (5%)
Query: 201 LIGLLS-LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITL 253
+I LL+ +V P + GF S ++ WI NI Y++G+DG+S+ I LT FIT
Sbjct: 39 IIALLTFIVSLPLWFGFDSSTAEMQFVERAAWIPLLNIEYYMGVDGISMPLIVLTTFITP 98
Query: 254 IIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGG 312
++++ + I+ K ++YM+AFLI+ G+++G F ALD MLFY+F+E+ LIP+F+IIG WGG
Sbjct: 99 LVVIAGWEVIQYKPSQYMAAFLIMEGVMVGVFSALDAMLFYVFWESMLIPMFVIIGVWGG 158
Query: 313 SNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFI 372
NR YA IKFFLYT +GS+ ML+++IY+++ S SF IL +H L + EQI +FI F +
Sbjct: 159 PNRVYATIKFFLYTFLGSVFMLVALIYMFFQSG-SFEILGFHDLKLGLNEQILIFIAFLL 217
Query: 373 AFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNL 432
AFA+K+P+WP+HTWLPDAHVEAPT GSVILAAIMLK+G YG LRFSLPI PDAS+ L
Sbjct: 218 AFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGFLRFSLPITPDASHTLDWL 277
Query: 433 IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI------------S 480
II +SLI+++YI +A+VQ D+KKLIAYSSIAHMGFVTLG F++ I
Sbjct: 278 IIGMSLIAVVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGFFIVFTISSGSSDASGAILG 337
Query: 481 IQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCS 540
++G ++QM+SH IS+AMF+ +G LY+++ +R I ++GG+IN +P F F + F++AN
Sbjct: 338 VEGGMVQMVSHGFISAAMFLCVGVLYDRLHSREIGDYGGVINTMPVFGAFMVFFAMANAG 397
Query: 541 LPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEFM+IL++ + +F L +T LI AAY+L + K ++F
Sbjct: 398 LPGTSGFVGEFMVILASFQADFWYAFLAATTLIIGAAYTLWMVKRVVF 445
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 27/223 (12%)
Query: 18 ASYLLIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHA 76
S+ ++GF +D L + + F+ + K +P+HTWLPD+ +E PT S ++ A
Sbjct: 191 GSFEILGF-HDLKLGLNEQILIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVIL-A 248
Query: 77 ATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTL 134
A M+ G + R S P+ + S+T +I+ + I ++G + ++Q D+K++IAYS++
Sbjct: 249 AIMLKIGGYGFLRFSLPITPDASHTLDWLIIGMSLIAVVYIGFVALVQQDMKKLIAYSSI 308
Query: 135 SQLGYMTVG------------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIIN 176
+ +G++T+G LGV V +++H F A +FL G ++ +
Sbjct: 309 AHMGFVTLGFFIVFTISSGSSDASGAILGVEGGMV---QMVSHGFISAAMFLCVG-VLYD 364
Query: 177 MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
H+++I + GG+ MP+ + ++ G P SGF +
Sbjct: 365 RLHSREIGDYGGVINTMPVFGAFMVFFAMANAGLPGTSGFVGE 407
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 145/312 (46%), Gaps = 28/312 (8%)
Query: 605 YLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLEL 662
Y+ E M + + V+I N ++ A IK+F+ L S FML + ++ +G+ E+
Sbjct: 139 YVFWESMLIPMFVIIGVWGGPNRVY---ATIKFFLYTFLGSVFMLVALIYMFFQSGSFEI 195
Query: 663 QSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLL 718
F+ +KL +N +L L+ + K+ + P H W+PD + G S+I+ ++
Sbjct: 196 LG-FHDLKLG-LNEQILIFIAFLL--AFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAIM 251
Query: 719 STTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
+ + L I ++W +++ +++ +++ A+ Q + K++IAYSS
Sbjct: 252 LKIGGYGF--LRFSLPITPDASHTLDW--LIIGMSLIAVVYIGFVALVQQDMKKLIAYSS 307
Query: 779 IAHMGLM------LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
IAHMG + +F+I S + + I+ + G+ ++++ F F + +L +
Sbjct: 308 IAHMGFVTLGFFIVFTISSGSSDASGAIL--GVEGGMVQMVSHGFISAAMFLCVGVLYDR 365
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLL 892
++ E+ + G+ P M+ F + AG P T GF +F + F+ W
Sbjct: 366 LHSR--EIGDYGGVINTMPVFGAFMVFFAMANAGLPGTSGFVGEFMVILASFQAD-FWYA 422
Query: 893 LLIIMCSLIGAK 904
L +IGA
Sbjct: 423 FLAATTLIIGAA 434
>gi|302879329|ref|YP_003847893.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Gallionella capsiferriformans ES-2]
gi|302582118|gb|ADL56129.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Gallionella capsiferriformans ES-2]
Length = 496
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/407 (52%), Positives = 304/407 (74%), Gaps = 9/407 (2%)
Query: 191 KYMPITCITSLIG--LLSLVGAPFFSGFYSKDKK------KIWIDYFNIYYFLGIDGLSL 242
K P+ + +L+G L LV P ++GF WI FNI+Y LG+DG+S+
Sbjct: 29 KNAPLARLLALVGSVLGCLVTIPLYTGFDISTSNMQFVELHDWITRFNIHYHLGVDGISM 88
Query: 243 WFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLI 301
FI L +F T+I++L I+K++A YM+AFL++SG++ G F ALD +LFY+F+EA LI
Sbjct: 89 LFILLNSFFTVIVVLAGWKVIEKRVAMYMAAFLVMSGIVNGVFAALDSILFYVFWEAMLI 148
Query: 302 PIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKI 361
P+FIIIG WGG NR YA +KFFLYTL+GSLLML+++IYLY +S SF IL +H L+I
Sbjct: 149 PMFIIIGIWGGPNRIYATMKFFLYTLLGSLLMLVALIYLYNLSGGSFAILDFHHLAIPMT 208
Query: 362 EQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPI 421
QI +FI FF AFA+K+P++P+HTWLPDAHVEAPT GSV+LAAIMLK+G YG LRFS+PI
Sbjct: 209 AQILIFIAFFFAFAVKVPMFPVHTWLPDAHVEAPTGGSVVLAAIMLKVGAYGFLRFSMPI 268
Query: 422 FPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISI 481
PDAS+ + ++I LSLI+I+YI L+A++Q D+KKL+AYSSI+HMGFVTLG+F+ +
Sbjct: 269 TPDASHKLAGVMIALSLIAIVYIGLVALMQSDMKKLVAYSSISHMGFVTLGLFIFNAYGM 328
Query: 482 QGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSL 541
+GA++QM+SH ++ A+F+ IG LY+++ +R I+++GG++N +P F+ FF++F++AN L
Sbjct: 329 EGALLQMLSHGFVAGALFLCIGVLYDRVHSRQIADYGGVVNKMPVFAAFFMLFAMANSGL 388
Query: 542 PGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
PGTS F+GEFM+I+ +K NF ++ LIF AAY+L + K +IF
Sbjct: 389 PGTSAFVGEFMVIMGTIKVNFWYAFAAASTLIFGAAYTLWMYKRVIF 435
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 95/152 (62%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K FP+HTWLPD+ +E PT S ++ AA M+ G + R S P+ + S+ +++
Sbjct: 224 KVPMFPVHTWLPDAHVEAPTGGSVVL-AAIMLKVGAYGFLRFSMPITPDASHKLAGVMIA 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV-SAYTV--SIFHLMTHAFFK 163
+ I ++GL+ ++Q+D+K+++AYS++S +G++T+GL + +AY + ++ +++H F
Sbjct: 283 LSLIAIVYIGLVALMQSDMKKLVAYSSISHMGFVTLGLFIFNAYGMEGALLQMLSHGFVA 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G ++ + H++ I + GG+ MP+
Sbjct: 343 GALFLCIG-VLYDRVHSRQIADYGGVVNKMPV 373
Score = 47.4 bits (111), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 121/261 (46%), Gaps = 37/261 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
A +K+F+ +L S ML + LY ++G F ++ +++ + A L +
Sbjct: 165 ATMKFFLYTLLGSLLMLVALIYLYNLSG-----GSFAILDFHHLAIPMTAQILIFIAFFF 219
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G S+++ ++ L V Y L + +P+ +
Sbjct: 220 AFAVKVPMFPVHTWLPDAHVEAPTGGSVVLAAIM-------LKVGAYGFL-RFSMPITPD 271
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+++ L++ +++ + A+ Q + K+++AYSSI+HMG + L
Sbjct: 272 ASHKLAGVMIALSLIAIVYIGLVALMQSDMKKLVAYSSISHMGFVTL----------GLF 321
Query: 801 IFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
IFN+ + L ++++ F F I +L + ++ ++ + G+ + P A M
Sbjct: 322 IFNAYGMEGALLQMLSHGFVAGALFLCIGVLYDRVHSR--QIADYGGVVNKMPVFAAFFM 379
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+F + +G P T F +F +
Sbjct: 380 LFAMANSGLPGTSAFVGEFMV 400
>gi|238023179|ref|ZP_04603605.1| hypothetical protein GCWU000324_03105 [Kingella oralis ATCC 51147]
gi|237865562|gb|EEP66702.1| hypothetical protein GCWU000324_03105 [Kingella oralis ATCC 51147]
Length = 500
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/411 (51%), Positives = 298/411 (72%), Gaps = 16/411 (3%)
Query: 194 PITCITSLIGLLS--LVGAPFF------SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ I +L+G + ++ P F SG Y + WI N+ Y LG+DG+S+ FI
Sbjct: 31 PLARILALVGAAASFVITLPLFTQFDRASGGYQFTELHAWIPALNLNYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + I+K+ A+YM+AFLI+SGLI GAF A D +LFY FFE LIP++
Sbjct: 91 ILNAFITLMVVLAGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYTFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQL-SITKIEQ 363
+IIG WGG R YAA+K FLYTL+GSLLML+++IYL Y + SF I + +I Q
Sbjct: 151 LIIGMWGGQRRMYAAMKLFLYTLLGSLLMLVALIYLSYQAGGSFAIADLQAIKNIPLGVQ 210
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LFI FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI P
Sbjct: 211 QLLFIAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILP 270
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK----- 478
DAS YF+ ++I LSLI+++YI L+A+VQ D+KKL+AYSSI+HMGFVTLG F+ +
Sbjct: 271 DASRYFAPVVIVLSLIAVVYIGLVALVQTDMKKLVAYSSISHMGFVTLGFFLFMQNGQPE 330
Query: 479 -ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ +GAI+QMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F ++F +A
Sbjct: 331 SWAFKGAIMQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMA 390
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
N LP TSGF+GEFM+I+ A ++ IG + +T LI+ A+Y+L + K +IF
Sbjct: 391 NAGLPATSGFVGEFMVIMGATHYSLWIGAIAATTLIWGASYTLWMYKRVIF 441
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 97/181 (53%), Gaps = 12/181 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +++ +
Sbjct: 224 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDASRYFAPVVIVL 283
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---------SAYTVSIFHLMT 158
I ++GL+ ++Q D+K+++AYS++S +G++T+G + A+ +I +++
Sbjct: 284 SLIAVVYIGLVALVQTDMKKLVAYSSISHMGFVTLGFFLFMQNGQPESWAFKGAIMQMIS 343
Query: 159 HAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
H F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P SGF
Sbjct: 344 HGFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVG 402
Query: 219 K 219
+
Sbjct: 403 E 403
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 125/257 (48%), Gaps = 22/257 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISIL-YGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA+K F+ +L S ML + L Y G+ +I ++ + NI V L + +
Sbjct: 164 AAMKLFLYTLLGSLLMLVALIYLSYQAGGSF---AIADLQAIKNIPLGVQQLLFIAFFLS 220
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-- 747
+ K+ + P H W+PD + A +++L+ ++L V Y L + +LP++ + +
Sbjct: 221 FAVKVPMFPVHTWLPDAHVEAPTGGSMVLAA---ITLKVGAYGFL-RFILPILPDASRYF 276
Query: 748 --ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFS-IISIKTSHNNLIIFNS 804
++++L++ +++ + A+ Q + K+++AYSSI+HMG + + ++ F
Sbjct: 277 APVVIVLSLIAVVYIGLVALVQTDMKKLVAYSSISHMGFVTLGFFLFMQNGQPESWAFKG 336
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F I ++ + +T N D + G+ P A MM+F
Sbjct: 337 A---IMQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMMLFGM 389
Query: 863 SLAGFPPTIGFYAKFFI 879
+ AG P T GF +F +
Sbjct: 390 ANAGLPATSGFVGEFMV 406
>gi|148244401|ref|YP_001219095.1| NADH dehydrogenase I chain M [Candidatus Vesicomyosocius okutanii
HA]
gi|146326228|dbj|BAF61371.1| NADH dehydrogenase I chain M [Candidatus Vesicomyosocius okutanii
HA]
Length = 501
Score = 418 bits (1074), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/382 (54%), Positives = 289/382 (75%), Gaps = 17/382 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIK-KKLAEYMSAFLILSGL 279
+K WI FNI Y +G+DG+S+ I LT F T+++I+ ++ K+ + YM+AFL++ GL
Sbjct: 64 EKSSWISQFNINYHIGVDGISVPLIILTTFSTILVIIAGWEVVIKRCSHYMAAFLMMEGL 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IIG F +LD +LFY+F+EA+LIP+ +IIG WGG NR YA+IKFFLYT +GS+ ML+S+IY
Sbjct: 124 IIGVFSSLDAILFYVFWEASLIPMLLIIGIWGGVNRVYASIKFFLYTFLGSVFMLLSLIY 183
Query: 340 LYYISNK--SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
+Y NK SF+I+ H L ++ EQ ++F FF+AFA+K+P++PMHTWLPDAHV+APT
Sbjct: 184 MY---NKGGSFSIIDMHNLKLSFTEQSYIFWAFFMAFAVKVPMFPMHTWLPDAHVQAPTG 240
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GSVILAAIMLK+G YG RFSLPI PDAS FS ++I LSLI+I+YI IA+VQ DIKKL
Sbjct: 241 GSVILAAIMLKMGGYGFFRFSLPIIPDASLEFSEIMIILSLIAIVYIGFIALVQRDIKKL 300
Query: 458 IAYSSIAHMGFVTLGIFML-----------TKISIQGAIIQMISHALISSAMFISIGFLY 506
IAYSSI+HMGFVTLGIF L + + ++GA++QMISH IS+AMF+ +G LY
Sbjct: 301 IAYSSISHMGFVTLGIFTLFLSYKQNIIEGSLLGLEGAMVQMISHGFISAAMFLVVGVLY 360
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ +R IS +GG+IN +P F+ F I+F++AN LPGTSGF+GEFM+IL A++ N G+
Sbjct: 361 DRLHSREISTYGGVINTMPKFTGFVILFAMANVGLPGTSGFVGEFMVILGAIQANIWYGI 420
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
L+++ LI AAY+L + K + F
Sbjct: 421 LSASTLIIGAAYTLWMVKRVFF 442
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 101/190 (53%), Gaps = 25/190 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K FP+HTWLPD+ ++ PT S ++ AA M+ G + R S P+ ++ S I+ I
Sbjct: 220 KVPMFPMHTWLPDAHVQAPTGGSVIL-AAIMLKMGGYGFFRFSLPIIPDASLEFSEIMII 278
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-----------------LGVSAY 149
++ A ++G + ++Q DIK++IAYS++S +G++T+G LG+
Sbjct: 279 LSLIAIVYIGFIALVQRDIKKLIAYSSISHMGFVTLGIFTLFLSYKQNIIEGSLLGLEGA 338
Query: 150 TVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
V +++H F A +FL G ++ + H+++I GG+ MP ++ ++ VG
Sbjct: 339 MV---QMISHGFISAAMFLVVG-VLYDRLHSREISTYGGVINTMPKFTGFVILFAMANVG 394
Query: 210 APFFSGFYSK 219
P SGF +
Sbjct: 395 LPGTSGFVGE 404
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 143/305 (46%), Gaps = 25/305 (8%)
Query: 609 ELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNV 668
L+ + L + I N ++ A+IK+F+ L S FML + +Y G+ F++
Sbjct: 143 SLIPMLLIIGIWGGVNRVY---ASIKFFLYTFLGSVFMLLSLIYMYNKGGS------FSI 193
Query: 669 IKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLLLSTTP 722
I ++N+ S S + ++F K+ + P H W+PD + G S+I+ ++
Sbjct: 194 IDMHNLKLSFTEQSYIFWAFFMAFAVKVPMFPMHTWLPDAHVQAPTGGSVILAAIMLKMG 253
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
F R + + + + +I++IL++ +++ A+ Q + K++IAYSSI+HM
Sbjct: 254 GYGFF----RFSLPIIPDASLEFSEIMIILSLIAIVYIGFIALVQRDIKKLIAYSSISHM 309
Query: 783 GLMLFSIISIKTSHNNLIIFNS---CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE 839
G + I ++ S+ II S + + +I++ F F V+ +L + ++ E
Sbjct: 310 GFVTLGIFTLFLSYKQNIIEGSLLGLEGAMVQMISHGFISAAMFLVVGVLYDRLHSR--E 367
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCS 899
+ + G+ P +++F + G P T GF +F + + IW +L
Sbjct: 368 ISTYGGVINTMPKFTGFVILFAMANVGLPGTSGFVGEFMVILGAIQAN-IWYGILSASTL 426
Query: 900 LIGAK 904
+IGA
Sbjct: 427 IIGAA 431
>gi|404379834|ref|ZP_10984883.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Simonsiella muelleri ATCC 29453]
gi|294484348|gb|EFG32031.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Simonsiella muelleri ATCC 29453]
Length = 505
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/417 (51%), Positives = 298/417 (71%), Gaps = 23/417 (5%)
Query: 194 PITCITSLIGLLS--LVGAPFFSGF------YSKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
P+ I +LIG + LV P F+ F Y + WI N+ Y LG+DG+S+ FI
Sbjct: 31 PLARILALIGAAAGFLVTLPLFTQFDRSNGGYQFTELHSWIPTLNLNYALGVDGISVLFI 90
Query: 246 PLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIF 304
L AFITL+++L + + I+ + A+YM+AFLI+SGLI GAF A D +LFY+FFE LIP++
Sbjct: 91 ILNAFITLMVVLSAWEVIQNRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLY 150
Query: 305 IIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-Q 363
+IIG WGG R YAA+K FLYTL+GSLLML+++IYL Y +N SF I + + Q
Sbjct: 151 LIIGMWGGPRRVYAAMKLFLYTLLGSLLMLVALIYLGYQAN-SFMISDLQAIKQIPLGVQ 209
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LFI FF++FA+K+P++P+HTWLPDAHVEAPT GS++LAAI LK+G YG LRF LPI P
Sbjct: 210 QLLFIAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFVLPIVP 269
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI---- 479
DAS YF+ ++I LSLI++IY+ ++A+VQ D+KKL+AYSSI+HMGFVTLGIF+ + +
Sbjct: 270 DASRYFAPVVIVLSLIAVIYVGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGS 329
Query: 480 --------SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
++GAI+QMISH +S+AMF+ IG +Y+++ TR I+++GG++NV+P F+ F
Sbjct: 330 LLGELNDWGLKGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFM 389
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F +AN LP TSGF+GEFM+I+ AV N IG L + LI A+Y+L + K IF
Sbjct: 390 MLFGMANAGLPATSGFVGEFMVIMGAVHVNLWIGALAAITLILGASYTLWMYKRTIF 446
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ + + P+ + S +++ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKIGAYGFLRFVLPIVPDASRYFAPVVIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL----GVSAYTV-----------S 152
I ++G++ ++Q D+K+++AYS++S +G++T+G+ G+ + ++ +
Sbjct: 283 SLIAVIYVGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGSLLGELNDWGLKGA 342
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
I +++H F A +F+ G ++ + H ++I + GG+ MP ++ ++ G P
Sbjct: 343 IVQMISHGFVSAAMFMCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPA 401
Query: 213 FSGFYSK 219
SGF +
Sbjct: 402 TSGFVGE 408
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 23/260 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILY-GITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA+K F+ +L S ML ++++Y G + S IK I V L + +
Sbjct: 164 AAMKLFLYTLLGSLLML--VALIYLGYQANSFMISDLQAIK--QIPLGVQQLLFIAFFLS 219
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + +LP+V + +
Sbjct: 220 FAVKVPMFPVHTWLPDAHVEAPTGGSMVLAA---ITLKIGAYGFL-RFVLPIVPDASRYF 275
Query: 748 --ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
++++L++ ++I + A+ Q + K+++AYSSI+HMG + I + ++
Sbjct: 276 APVVIVLSLIAVIYVGMVALVQTDMKKLVAYSSISHMGFVTLGIFLFSGMFSGSLLGELN 335
Query: 806 DSGL----FYIITYIFAILGAFGVIILLKN--NTCNKTDELDIFIGLHQRNPWCALIMMI 859
D GL +I++ F F I ++ + +T N D + G+ P A MM+
Sbjct: 336 DWGLKGAIVQMISHGFVSAAMFMCIGVMYDRLHTRNIAD----YGGVVNVMPKFAAFMML 391
Query: 860 FMFSLAGFPPTIGFYAKFFI 879
F + AG P T GF +F +
Sbjct: 392 FGMANAGLPATSGFVGEFMV 411
>gi|226939468|ref|YP_002794541.1| NADH dehydrogenase subunit M [Laribacter hongkongensis HLHK9]
gi|226714394|gb|ACO73532.1| NuoM [Laribacter hongkongensis HLHK9]
Length = 499
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 283/371 (76%), Gaps = 7/371 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI NI Y LG+DG+S+WFI L +F TL+++L I+ ++A+Y +AFLI+SGLI GA
Sbjct: 69 WIASLNINYALGVDGISVWFIILNSFTTLLVVLAGWQVIQTRVAQYFAAFLIMSGLINGA 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+FFEA LIP++++IG WGG R YA+IKFFLYTL+GSLLML+S IYLY+
Sbjct: 129 FAALDAVLFYVFFEAMLIPMYLVIGVWGGPRRVYASIKFFLYTLLGSLLMLVSFIYLYFQ 188
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF I + + + QI LF+ FF++FA+K+P++P+HTWLPDAHVEAPT GS++LA
Sbjct: 189 VGGSFEITRFQAVPLGLTAQILLFVAFFMSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLA 248
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LKLG YG LRF LPI PDA+ S+L+I LSL++++YI L+A+VQ D+KKL+AYSSI
Sbjct: 249 AITLKLGAYGFLRFLLPIVPDAARELSSLMIVLSLVAVVYIGLVALVQTDMKKLVAYSSI 308
Query: 464 AHMGFVTLGIFMLT------KISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
AHMGFVTLG FM T + +++GA++QMISH +S+AMF+ IG LY++M +R I+++
Sbjct: 309 AHMGFVTLGFFMFTDAGALNQWAVEGALVQMISHGFVSAAMFMCIGVLYDRMHSRNIADY 368
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++N +P ++ F + F++AN LP TSGF+GEFM+I+ AV+ NF +T LIF AA
Sbjct: 369 GGVVNKMPVYAAFALFFAMANAGLPATSGFVGEFMVIMGAVQVNFWYAFFAATTLIFGAA 428
Query: 578 YSLCLSKNIIF 588
Y+L + K ++F
Sbjct: 429 YTLWMYKRVVF 439
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 109/201 (54%), Gaps = 12/201 (5%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL +TA + F+ + K FP+HTWLPD+ +E PT S ++ A T+ +
Sbjct: 202 PLGLTAQILLFVAFFMSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLR 261
Query: 89 RMSPLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---- 143
+ P+ + LS ++ + ++ A ++GL+ ++Q D+K+++AYS+++ +G++T+G
Sbjct: 262 FLLPIVPDAARELSSLMIVLSLVAVVYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFMF 321
Query: 144 -----LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCI 198
L A ++ +++H F A +F+ G ++ + H+++I + GG+ MP+
Sbjct: 322 TDAGALNQWAVEGALVQMISHGFVSAAMFMCIG-VLYDRMHSRNIADYGGVVNKMPVYAA 380
Query: 199 TSLIGLLSLVGAPFFSGFYSK 219
+L ++ G P SGF +
Sbjct: 381 FALFFAMANAGLPATSGFVGE 401
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 125/258 (48%), Gaps = 25/258 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML LY ++ F + + + + A LL + +
Sbjct: 163 ASIKFFLYTLLGSLLMLVSFIYLY-----FQVGGSFEITRFQAVPLGLTAQILLFVAFFM 217
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLST-TPKLSLFVIIYRLLIKCLLPLVINWQK 747
SF K+ + P H W+PD + A +++L+ T KL + ++ LLP+V + +
Sbjct: 218 SFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYG-----FLRFLLPIVPDAAR 272
Query: 748 ----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLML--FSIISIKTSHNNLII 801
++++L++ +++ + A+ Q + K+++AYSSIAHMG + F + + + N
Sbjct: 273 ELSSLMIVLSLVAVVYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFMFTDAGALNQW-- 330
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ + L +I++ F F I +L + ++ + + G+ + P A + F
Sbjct: 331 --AVEGALVQMISHGFVSAAMFMCIGVLYDRMHSR--NIADYGGVVNKMPVYAAFALFFA 386
Query: 862 FSLAGFPPTIGFYAKFFI 879
+ AG P T GF +F +
Sbjct: 387 MANAGLPATSGFVGEFMV 404
>gi|344200630|ref|YP_004784956.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidithiobacillus ferrivorans SS3]
gi|343776074|gb|AEM48630.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Acidithiobacillus ferrivorans SS3]
Length = 494
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/383 (54%), Positives = 294/383 (76%), Gaps = 7/383 (1%)
Query: 213 FSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKK 265
F+GF + ++ WI NI+Y LGIDG+SLWFI LT+ +T+++I+ S ++K++
Sbjct: 51 FAGFDTHTAAMQFSERVAWIPTLNIFYHLGIDGISLWFILLTSLLTVLVIISSWRNVKER 110
Query: 266 LAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLY 325
+A++M+AFLI+ G++IG FCALD +LFY+F+EA LIP+F+IIG WGG R YA IKFFLY
Sbjct: 111 VAQFMAAFLIMEGMMIGVFCALDAILFYVFWEAMLIPMFLIIGVWGGPRRVYATIKFFLY 170
Query: 326 TLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHT 385
T +GS+LML++++YLY+ S SF +L + + + Q+ +F+ FF AFA+KIP+WP+HT
Sbjct: 171 TFLGSVLMLVALLYLYFHSGDSFGLLVFQKTPLGMSAQVLIFLAFFFAFAVKIPMWPVHT 230
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAHVEAPT GSVILAA+MLK+G YG LR SLPI PDAS+ + L+I LSLI+IIY++
Sbjct: 231 WLPDAHVEAPTGGSVILAAVMLKMGAYGFLRLSLPIVPDASHKLAWLMIALSLIAIIYVA 290
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFL 505
L+A+VQ D+KKLIAYSSIAHMGFVTLG F+ ++I+G IIQM+SH +S+AMF+ +G L
Sbjct: 291 LVAIVQEDMKKLIAYSSIAHMGFVTLGFFVFDSVAIEGGIIQMLSHGFVSAAMFLCVGVL 350
Query: 506 YNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
Y++M TR IS +GG+ NV+P F+ ++F++AN LPGTSGF+GEFM++L + +
Sbjct: 351 YDRMHTRNISAYGGVANVMPIFAALMMLFAMANVGLPGTSGFVGEFMVVLGTYQVSPWAA 410
Query: 566 VLTSTALIFSAAYSLCLSKNIIF 588
+L +T LI A+Y+L L K +IF
Sbjct: 411 ILAATGLITGASYTLWLFKRVIF 433
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 109/198 (55%), Gaps = 8/198 (4%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFM 86
PL ++A + FL K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 200 KTPLGMSAQVLIFLAFFFAFAVKIPMWPVHTWLPDAHVEAPTGGSVIL-AAVMLKMGAYG 258
Query: 87 ITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
R+S P+ ++ L+ +++ + I ++ L+ I+Q D+K++IAYS+++ +G++T+G
Sbjct: 259 FLRLSLPIVPDASHKLAWLMIALSLIAIIYVALVAIVQEDMKKLIAYSSIAHMGFVTLGF 318
Query: 145 GV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
V A I +++H F A +FL G ++ + H ++I GG+ MPI +
Sbjct: 319 FVFDSVAIEGGIIQMLSHGFVSAAMFLCVG-VLYDRMHTRNISAYGGVANVMPIFAALMM 377
Query: 202 IGLLSLVGAPFFSGFYSK 219
+ ++ VG P SGF +
Sbjct: 378 LFAMANVGLPGTSGFVGE 395
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 33/268 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+F+ L S ML + LY +G +F L S L L
Sbjct: 163 ATIKFFLYTFLGSVLMLVALLYLYFHSGDSFGLLVFQKTPLG---MSAQVLIFLAFFFAF 219
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + G S+I+ ++ ++ LP+V +
Sbjct: 220 AVKIPMWPVHTWLPDAHVEAPTGGSVILAAVMLKMGAYGF--------LRLSLPIVPDAS 271
Query: 747 K----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+++ L++ ++I + AI Q + K++IAYSSIAHMG + +F
Sbjct: 272 HKLAWLMIALSLIAIIYVALVAIVQEDMKKLIAYSSIAHMGFVTL----------GFFVF 321
Query: 803 NSC--DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+S + G+ ++++ F F + +L + T + + G+ P A +MM+F
Sbjct: 322 DSVAIEGGIIQMLSHGFVSAAMFLCVGVLYDRM--HTRNISAYGGVANVMPIFAALMMLF 379
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ G P T GF +F + ++
Sbjct: 380 AMANVGLPGTSGFVGEFMVVLGTYQVSP 407
>gi|386828053|ref|ZP_10115160.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Beggiatoa alba B18LD]
gi|386428937|gb|EIJ42765.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Beggiatoa alba B18LD]
Length = 536
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/402 (53%), Positives = 291/402 (72%), Gaps = 25/402 (6%)
Query: 211 PFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P F GF S ++ WI FNIYY LG+DG+S+ I LT F T++++L + I+
Sbjct: 52 PLFFGFDSTTPAMQFSERLAWIPSFNIYYHLGVDGISMPLIILTTFTTVLVVLAGWEVIQ 111
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
K A+YM++FLI+ G++IG F +LD +LFY+ FEA L+P+FIIIG WGG NR YA IKFF
Sbjct: 112 YKSAQYMASFLIMEGVMIGVFASLDAILFYVMFEAMLVPMFIIIGIWGGVNRIYATIKFF 171
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYT +GS+ ML++++YLY S+ SF IL +HQL I+ Q+ +F FF+AFA+K+P+WP+
Sbjct: 172 LYTFLGSVFMLVALLYLYSQSD-SFYILDYHQLKISFQAQVLIFFAFFMAFAVKVPMWPV 230
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSVILAAIMLKLG YG LRF+LPI PDAS +I LSL++++Y
Sbjct: 231 HTWLPDAHVEAPTGGSVILAAIMLKLGAYGFLRFTLPIVPDASKDLDWFMIFLSLVAVVY 290
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI-----------------SIQGAII 486
I +A+VQ D+KKLIAYSSI+HMGFVTLG FM+ +I IQGA++
Sbjct: 291 IGFVALVQKDMKKLIAYSSISHMGFVTLGFFMVFRILANTQIPPEAATAGAAMGIQGAMV 350
Query: 487 QMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSG 546
QMISH IS AMF+ +G LY+++ +R+I ++GG+ N +P F++F + F+++N LPGTSG
Sbjct: 351 QMISHGFISGAMFLCVGVLYDRLHSRMIHDYGGVANTMPLFAMFSVFFAMSNAGLPGTSG 410
Query: 547 FIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+GEF++ILSA K NF I L +T LI AAY+L + K +IF
Sbjct: 411 FVGEFLVILSAFKANFWIAFLAATTLILGAAYTLWMVKRVIF 452
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 38/212 (17%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ +E PT S ++ AA M+ G + R + P+ ++ L ++F
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSVIL-AAIMLKLGAYGFLRFTLPIVPDASKDLDWFMIF 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG----------------------- 143
+ + ++G + ++Q D+K++IAYS++S +G++T+G
Sbjct: 283 LSLVAVVYIGFVALVQKDMKKLIAYSSISHMGFVTLGFFMVFRILANTQIPPEAATAGAA 342
Query: 144 LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIG 203
+G+ V +++H F +FL G ++ + H++ I + GG+ MP+ + S+
Sbjct: 343 MGIQGAMV---QMISHGFISGAMFLCVG-VLYDRLHSRMIHDYGGVANTMPLFAMFSVFF 398
Query: 204 LLSLVGAPFFSGFY-------SKDKKKIWIDY 228
+S G P SGF S K WI +
Sbjct: 399 AMSNAGLPGTSGFVGEFLVILSAFKANFWIAF 430
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 46/297 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+F+ L S FML + LY + + F ++ + + S A L+ +
Sbjct: 166 ATIKFFLYTFLGSVFMLVALLYLYSQSDS------FYILDYHQLKISFQAQVLIFFAFFM 219
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G S+I+ ++ KL + ++ LP+V +
Sbjct: 220 AFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAIML---KLGAYG-----FLRFTLPIVPD 271
Query: 745 WQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIKT 794
K ++ L++ +++ A+ Q + K++IAYSSI+HMG M+F I++
Sbjct: 272 ASKDLDWFMIFLSLVAVVYIGFVALVQKDMKKLIAYSSISHMGFVTLGFFMVFRILA--- 328
Query: 795 SHNNLIIFNSCDSG--------LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGL 846
N I + +G + +I++ F F + +L + ++ + + G+
Sbjct: 329 --NTQIPPEAATAGAAMGIQGAMVQMISHGFISGAMFLCVGVLYDRLHSRM--IHDYGGV 384
Query: 847 HQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
P A+ + F S AG P T GF +F + F+ W+ L ++GA
Sbjct: 385 ANTMPLFAMFSVFFAMSNAGLPGTSGFVGEFLVILSAFKA-NFWIAFLAATTLILGA 440
>gi|345873396|ref|ZP_08825308.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiorhodococcus drewsii AZ1]
gi|343917284|gb|EGV28090.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiorhodococcus drewsii AZ1]
Length = 524
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/429 (49%), Positives = 298/429 (69%), Gaps = 18/429 (4%)
Query: 173 IIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIY 232
++ N + ++DI + + C+T L+ L +G + ++ WI FN+
Sbjct: 21 VLANGEKSRDIAR----WTALAFACVTFLVSLGLWIGFDASTAQMQFVERTPWIPTFNVE 76
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
YFLG+DG+S+ I LT FIT+ +++ + I K +Y++AFLI+ G+++G F ALD +L
Sbjct: 77 YFLGVDGISMPLIVLTTFITIFVVIAGWEVIAYKQNQYLAAFLIMEGVMVGVFSALDAVL 136
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+F+EA LIP+FIIIG WGG NR YA IKFFLYT GS+ MLI++IY+Y+ S SF+IL
Sbjct: 137 FYVFWEAMLIPMFIIIGVWGGPNRVYATIKFFLYTFFGSVFMLIALIYMYFQSG-SFSIL 195
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ L + QI +FI F +AFA+K+P++P+HTWLPDAHVEAPT GSVILAAIMLK+G
Sbjct: 196 DFQSLQLGMTAQILIFIAFLMAFAVKVPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGG 255
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLPI PDAS LII LSLI+I+YI +A+VQ D+KKLIAYSSIAHMGFVTL
Sbjct: 256 YGFLRFSLPITPDASASLDWLIIALSLIAIVYIGFVALVQQDMKKLIAYSSIAHMGFVTL 315
Query: 472 GIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
G F++ I I+G ++QMISH IS A+F+ +G LY+++ +R I+++GG
Sbjct: 316 GFFVVFTILANPAVSSGSVMGIEGGMVQMISHGFISGALFLCVGVLYDRVHSREIADYGG 375
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+IN +P F F + F++AN LPGTSGF+GEFM+IL+ + +F L +T LI +AA++
Sbjct: 376 VINTMPWFGAFMVYFAMANAGLPGTSGFVGEFMVILATFRADFWWSFLAATPLILAAAFT 435
Query: 580 LCLSKNIIF 588
L + K ++F
Sbjct: 436 LWMVKRVVF 444
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 128/265 (48%), Gaps = 31/265 (11%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L +TA + F+ + K FP+HTWLPD+ +E PT S +I AA M+ G + R
Sbjct: 202 LGMTAQILIFIAFLMAFAVKVPMFPVHTWLPDAHVEAPTGGS-VILAAIMLKIGGYGFLR 260
Query: 90 MS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL--- 144
S P+ ++ +L +I+ + I ++G + ++Q D+K++IAYS+++ +G++T+G
Sbjct: 261 FSLPITPDASASLDWLIIALSLIAIVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGFFVV 320
Query: 145 -------GVSAYTV-----SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
VS+ +V + +++H F LFL G ++ + H+++I + GG+
Sbjct: 321 FTILANPAVSSGSVMGIEGGMVQMISHGFISGALFLCVG-VLYDRVHSREIADYGGVINT 379
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYFNIYYFLGIDGLSLWFI 245
MP + ++ G P SGF + + W + + +LW +
Sbjct: 380 MPWFGAFMVYFAMANAGLPGTSGFVGEFMVILATFRADFWWSFLAATPLILAAAFTLWMV 439
Query: 246 PLTAFITL----IIILISLDIKKKL 266
F + + L LDI++++
Sbjct: 440 KRVVFGEVKNEKVAALADLDIRERI 464
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 124/273 (45%), Gaps = 22/273 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
A IK+F+ S FML + +Y +G+ F+++ ++ + A L+ I ++
Sbjct: 163 ATIKFFLYTFFGSVFMLIALIYMYFQSGS------FSILDFQSLQLGMTAQILIFIAFLM 216
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G S+I+ ++ + + L I ++
Sbjct: 217 AFAVKVPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--LRFSLPITPDASASLD 274
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
W +++ L++ +++ A+ Q + K++IAYSSIAHMG + + T N + +
Sbjct: 275 W--LIIALSLIAIVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGFFVVFTILANPAVSSG 332
Query: 805 C----DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ G+ +I++ F F + +L + ++ E+ + G+ PW M+ F
Sbjct: 333 SVMGIEGGMVQMISHGFISGALFLCVGVLYDRVHSR--EIADYGGVINTMPWFGAFMVYF 390
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ AG P T GF +F + F W L
Sbjct: 391 AMANAGLPGTSGFVGEFMVILATFRADFWWSFL 423
>gi|431930027|ref|YP_007243073.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thioflavicoccus mobilis 8321]
gi|431828330|gb|AGA89443.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioflavicoccus mobilis 8321]
Length = 504
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/381 (54%), Positives = 279/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI F I Y+LG+DG+S+ I LT F T+ +IL + I + + YM+AFLI+ GL
Sbjct: 66 EQVPWIPDFGIEYYLGVDGISMPLILLTTFTTIFVILAGWEVITYRPSHYMAAFLIMEGL 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+F+EA LIP+FIIIG WGG NR YA IKFFLYT GS+ MLI++IY
Sbjct: 126 MIGVFSALDAVLFYVFWEAMLIPMFIIIGVWGGPNRIYATIKFFLYTFFGSVFMLIALIY 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+ + ++ SF+IL++H L + EQ+ +FI F +AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 186 MGFKAD-SFSILAFHTLPLGMTEQVLIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFSLPI PDAS LII +SLI+++YI+ +A+VQ D+KKLIA
Sbjct: 245 VILAAIMLKIGGYGFLRFSLPITPDASSQLDWLIIAMSLIAVVYIAFVALVQQDMKKLIA 304
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F+ I IQG ++QMISH IS A+F+ +G LY+
Sbjct: 305 YSSIAHMGFVTLGFFIAFTILQRADFDSGAVMGIQGGMVQMISHGFISGALFLCVGVLYD 364
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ +R IS++GG++N +P F + F++AN LPGTSGF+GEF++IL++ K +F L
Sbjct: 365 RLHSRQISDYGGVVNTMPVFGGLMVFFAMANAGLPGTSGFVGEFLVILASFKADFWFAFL 424
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L L K ++F
Sbjct: 425 AATTLILGAAYTLWLVKRVVF 445
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 108/209 (51%), Gaps = 22/209 (10%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL +T + F+ + K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 202 PLGMTEQVLIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGGYGFL 260
Query: 89 RMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV 146
R S P+ +++ L +I+ + I ++ + ++Q D+K++IAYS+++ +G++T+G +
Sbjct: 261 RFSLPITPDASSQLDWLIIAMSLIAVVYIAFVALVQQDMKKLIAYSSIAHMGFVTLGFFI 320
Query: 147 SAYTV----------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLY 190
A+T+ + +++H F LFL G ++ + H++ I + GG+
Sbjct: 321 -AFTILQRADFDSGAVMGIQGGMVQMISHGFISGALFLCVG-VLYDRLHSRQISDYGGVV 378
Query: 191 KYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP+ + ++ G P SGF +
Sbjct: 379 NTMPVFGGLMVFFAMANAGLPGTSGFVGE 407
Score = 47.8 bits (112), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 141/315 (44%), Gaps = 34/315 (10%)
Query: 605 YLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILY-GITGTLE 661
Y+ E M + + ++I N I+ A IK+F+ S FML I+++Y G
Sbjct: 139 YVFWEAMLIPMFIIIGVWGGPNRIY---ATIKFFLYTFFGSVFML--IALIYMGFKA--- 190
Query: 662 LQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIIT 715
F+++ + + + L+ I L+F K+ + P H W+PD + G S+I+
Sbjct: 191 --DSFSILAFHTLPLGMTEQVLIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVILA 248
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
++ + + L I ++W +++ +++ +++ A+ Q + K++IA
Sbjct: 249 AIMLKIGGYGF--LRFSLPITPDASSQLDW--LIIAMSLIAVVYIAFVALVQQDMKKLIA 304
Query: 776 YSSIAHMGLML------FSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
YSSIAHMG + F+I+ + ++ G+ +I++ F F + +L
Sbjct: 305 YSSIAHMGFVTLGFFIAFTILQRADFDSGAVM--GIQGGMVQMISHGFISGALFLCVGVL 362
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ ++ ++ + G+ P +M+ F + AG P T GF +F + F+
Sbjct: 363 YDRLHSR--QISDYGGVVNTMPVFGGLMVFFAMANAGLPGTSGFVGEFLVILASFKA-DF 419
Query: 890 WLLLLIIMCSLIGAK 904
W L ++GA
Sbjct: 420 WFAFLAATTLILGAA 434
>gi|424792139|ref|ZP_18218401.1| NADH-ubiquinone oxidoreductasesubunit [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422797215|gb|EKU25585.1| NADH-ubiquinone oxidoreductasesubunit [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 500
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/396 (51%), Positives = 287/396 (72%), Gaps = 19/396 (4%)
Query: 211 PFFSGF-YSKD-----KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIK 263
P +GF Y+ D + WI ++I Y LG DG+++ I LT +T++ ++ + I+
Sbjct: 47 PLLTGFDYASDALQFVETHAWIPAYDIGYNLGADGIAVALIVLTTLVTVLALIGAWTSIE 106
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
K++ +Y++AFLIL G+ +G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFF
Sbjct: 107 KRVNQYVAAFLILEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGIWGGPRRIYAAVKFF 166
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYT +GS+LML+ +IYL Y+ SF + +QLS+T EQ WLF F IAFA+K+P++P+
Sbjct: 167 LYTFLGSVLMLVGLIYL-YLKGGSFQLADMYQLSLTSKEQTWLFFAFLIAFAVKVPMFPV 225
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSVILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY
Sbjct: 226 HTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNEWAWLVIALSLIAVIY 285
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----------LTKISIQGAIIQMISHA 492
+ L+A+VQ D+KKLIAYSSIAHMGFVTLGIF+ ++ +QGA++QMISH
Sbjct: 286 VGLVALVQDDMKKLIAYSSIAHMGFVTLGIFVAFALVGFGSTDAARLGLQGAMVQMISHG 345
Query: 493 LISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFM 552
+S AMF +G LY++M TR I+++GG+ NV+P F+ F ++F +AN LPGTSGF+GEFM
Sbjct: 346 FVSGAMFSCVGVLYDRMHTRRIADYGGVANVMPWFAAFAMLFFMANAGLPGTSGFVGEFM 405
Query: 553 IILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+I+++ + + + V T L+ +AAY+L L + + F
Sbjct: 406 VIMASFQAHPLLAVGAGTTLVITAAYTLWLYRRVFF 441
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + L + SN +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNEWAWLVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------SI 153
I ++GL+ ++Q+D+K++IAYS+++ +G++T+G+ V+ V ++
Sbjct: 279 SLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGIFVAFALVGFGSTDAARLGLQGAM 338
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 339 VQMISHGFVSGAMFSCVG-VLYDRMHTRRIADYGGVANVMPWFAAFAMLFFMANAGLPGT 397
Query: 214 SGFYSK 219
SGF +
Sbjct: 398 SGFVGE 403
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 129/270 (47%), Gaps = 25/270 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ + L + + L + L +
Sbjct: 161 AAVKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADMYQ-LSLTSKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP++ + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPILPDASNEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + I L+ F S D
Sbjct: 273 WLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGIFVAFA----LVGFGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F + +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCVGVLYDRM--HTRRIADYGGVANVMPWFAAFAML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVIMASFQAHPL 416
>gi|433676733|ref|ZP_20508807.1| NADH dehydrogenase I subunit M [Xanthomonas translucens pv.
translucens DSM 18974]
gi|440730787|ref|ZP_20910856.1| NADH:ubiquinone oxidoreductase subunit M [Xanthomonas translucens
DAR61454]
gi|430818148|emb|CCP39127.1| NADH dehydrogenase I subunit M [Xanthomonas translucens pv.
translucens DSM 18974]
gi|440377105|gb|ELQ13759.1| NADH:ubiquinone oxidoreductase subunit M [Xanthomonas translucens
DAR61454]
Length = 500
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/396 (51%), Positives = 287/396 (72%), Gaps = 19/396 (4%)
Query: 211 PFFSGF-YSKD-----KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIK 263
P +GF Y+ D + WI ++I Y LG DG+++ I LT +T++ ++ + I+
Sbjct: 47 PLLTGFDYASDALQFVETHAWIPAYDIGYNLGADGIAVALIVLTTLVTVLALIGAWTSIE 106
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
K++ +Y++AFLIL G+ +G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFF
Sbjct: 107 KRVNQYVAAFLILEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGIWGGPRRIYAAVKFF 166
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
LYT +GS+LML+ +IYL Y+ SF + +QLS+T EQ WLF F IAFA+K+P++P+
Sbjct: 167 LYTFLGSVLMLVGLIYL-YLKGGSFQLADLYQLSLTSKEQTWLFFAFLIAFAVKVPMFPV 225
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSVILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY
Sbjct: 226 HTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNEWAWLVIALSLIAVIY 285
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----------LTKISIQGAIIQMISHA 492
+ L+A+VQ D+KKLIAYSSIAHMGFVTLGIF+ ++ +QGA++QMISH
Sbjct: 286 VGLVALVQDDMKKLIAYSSIAHMGFVTLGIFVAFALVGFGSTDAARLGLQGAMVQMISHG 345
Query: 493 LISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFM 552
+S AMF +G LY++M TR I+++GG+ NV+P F+ F ++F +AN LPGTSGF+GEFM
Sbjct: 346 FVSGAMFSCVGVLYDRMHTRRIADYGGVANVMPWFAAFAMLFFMANAGLPGTSGFVGEFM 405
Query: 553 IILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+I+++ + + + V T L+ +AAY+L L + + F
Sbjct: 406 VIMASFQAHPLLAVGAGTTLVITAAYTLWLYRRVFF 441
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + L + SN +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNEWAWLVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------SI 153
I ++GL+ ++Q+D+K++IAYS+++ +G++T+G+ V+ V ++
Sbjct: 279 SLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGIFVAFALVGFGSTDAARLGLQGAM 338
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 339 VQMISHGFVSGAMFSCVG-VLYDRMHTRRIADYGGVANVMPWFAAFAMLFFMANAGLPGT 397
Query: 214 SGFYSK 219
SGF +
Sbjct: 398 SGFVGE 403
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 129/270 (47%), Gaps = 25/270 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ + L + + L + L +
Sbjct: 161 AAVKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLYQ-LSLTSKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP++ + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPILPDASNEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + I L+ F S D
Sbjct: 273 WLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGIFVAFA----LVGFGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F + +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCVGVLYDRM--HTRRIADYGGVANVMPWFAAFAML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVIMASFQAHPL 416
>gi|294624666|ref|ZP_06703336.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601022|gb|EFF45089.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 477
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 43 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 102
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 103 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 161
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 162 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 221
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 222 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 281
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 282 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 341
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 342 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 401
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 402 LVITAAYTLWLYKRVFF 418
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 195 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 254
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 255 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 313
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 314 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 372
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 373 GTSGFVGE 380
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 137 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 192
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 193 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 248
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 249 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 305
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 306 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 363
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 364 FFMANAGLPGTSGFVGEFMVILASFQKHPL 393
>gi|381171249|ref|ZP_09880397.1| proton-translocating NADH-quinone oxidoreductase,chain M family
protein [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|380688318|emb|CCG36884.1| proton-translocating NADH-quinone oxidoreductase,chain M family
protein [Xanthomonas citri pv. mangiferaeindicae LMG
941]
Length = 491
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 356 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 269 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GTSGFVGE 394
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 263 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 319
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 320 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 377
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 378 FFMANAGLPGTSGFVGEFMVILASFQKHPL 407
>gi|77166011|ref|YP_344536.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrosococcus oceani ATCC 19707]
gi|254436371|ref|ZP_05049877.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Nitrosococcus oceani AFC27]
gi|76884325|gb|ABA59006.1| NADH dehydrogenase subunit M [Nitrosococcus oceani ATCC 19707]
gi|207088061|gb|EDZ65334.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Nitrosococcus oceani AFC27]
Length = 504
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/382 (52%), Positives = 282/382 (73%), Gaps = 14/382 (3%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
+K W++ F++YY LGIDG+S+ I LT F T+++++ I+ KLA+YM++FLI+ G
Sbjct: 64 QEKLSWVEAFDVYYHLGIDGISMPLIILTTFSTVLVVIAGWRVIEHKLAQYMASFLIMEG 123
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L+ G F ALD +LFY FFE LIP+F+IIG WGG NR YA +KFFLYT +GS+ L++++
Sbjct: 124 LMNGVFAALDAVLFYFFFEGMLIPLFLIIGIWGGPNRIYATLKFFLYTFLGSVFFLLALL 183
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YL ++ F+IL +HQ+ + QI +F+ F +AFA+K+P+WP+HTWLPDAHVEAPT G
Sbjct: 184 YLRSVTG-GFSILEFHQVPLDMQAQIGIFLAFLLAFAVKVPMWPVHTWLPDAHVEAPTGG 242
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILAAI LK+G YG +RFSLPI PDAS + LIITLSLI+++YI L+A+VQ D+KKLI
Sbjct: 243 SVILAAITLKIGAYGFMRFSLPITPDASMALNWLIITLSLIAVVYIGLVAIVQEDLKKLI 302
Query: 459 AYSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLY 506
AYSSIAHMGFVTLG+F+ I ++GA++QMISH L+S+AMF+ +G LY
Sbjct: 303 AYSSIAHMGFVTLGLFIAFAIFSQGVEGDGALLGLEGALVQMISHGLVSAAMFLCVGVLY 362
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TRLI ++GG++N +P F+ F ++F++AN LPGTSGF+GEF++IL A + +F
Sbjct: 363 DRLHTRLIKDYGGVVNKMPIFASFMVLFAMANVGLPGTSGFVGEFLVILGAFQADFWYAF 422
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
S LI A Y+L + K ++F
Sbjct: 423 FASMTLILGATYTLWMVKRVVF 444
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 20/211 (9%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+ PL + A + FL + K +P+HTWLPD+ +E PT S ++ A T+ G +
Sbjct: 198 HQVPLDMQAQIGIFLAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAITL-KIGAY 256
Query: 86 MITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+ ++ AL+ +I+ + I ++GL+ I+Q D+K++IAYS+++ +G++T+G
Sbjct: 257 GFMRFSLPITPDASMALNWLIITLSLIAVVYIGLVAIVQEDLKKLIAYSSIAHMGFVTLG 316
Query: 144 L---------GVSAYTV------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
L GV ++ +++H A +FL G ++ + H + I++ GG
Sbjct: 317 LFIAFAIFSQGVEGDGALLGLEGALVQMISHGLVSAAMFLCVG-VLYDRLHTRLIKDYGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ MPI ++ ++ VG P SGF +
Sbjct: 376 VVNKMPIFASFMVLFAMANVGLPGTSGFVGE 406
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 32/308 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + I N I+ A +K+F+ L S F L + L +TG F+++
Sbjct: 145 LIPLFLIIGIWGGPNRIY---ATLKFFLYTFLGSVFFLLALLYLRSVTGG------FSIL 195
Query: 670 KLNNINCSVLALS--LLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPK 723
+ + + + A L ++ + K+ + P H W+PD + G S+I L + T K
Sbjct: 196 EFHQVPLDMQAQIGIFLAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVI---LAAITLK 252
Query: 724 LSLFVII-YRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
+ + + + L I + +NW +++ L++ +++ + AI Q + K++IAYSSIAHM
Sbjct: 253 IGAYGFMRFSLPITPDASMALNW--LIITLSLIAVVYIGLVAIVQEDLKKLIAYSSIAHM 310
Query: 783 GLML------FSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK 836
G + F+I S + ++ + L +I++ F + +L +
Sbjct: 311 GFVTLGLFIAFAIFSQGVEGDGALL--GLEGALVQMISHGLVSAAMFLCVGVLYDRL--H 366
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLII 896
T + + G+ + P A M++F + G P T GF +F + F+ W
Sbjct: 367 TRLIKDYGGVVNKMPIFASFMVLFAMANVGLPGTSGFVGEFLVILGAFQAD-FWYAFFAS 425
Query: 897 MCSLIGAK 904
M ++GA
Sbjct: 426 MTLILGAT 433
>gi|21243420|ref|NP_643002.1| NADH dehydrogenase subunit M [Xanthomonas axonopodis pv. citri str.
306]
gi|21108972|gb|AAM37538.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas
axonopodis pv. citri str. 306]
Length = 500
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 66 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALMGAWRSIDKRVNQYVAAFLILEGVTVGI 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 126 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 184
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 185 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 244
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 245 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 304
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 305 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 364
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 365 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 424
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 425 LVITAAYTLWLYKRVFF 441
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 218 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 278 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 336
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 337 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 395
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 396 GTSGFVGE 403
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 160 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 215
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 216 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 271
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 272 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVILASFQKHPL 416
>gi|325915551|ref|ZP_08177862.1| NADH dehydrogenase subunit M [Xanthomonas vesicatoria ATCC 35937]
gi|325538267|gb|EGD09952.1| NADH dehydrogenase subunit M [Xanthomonas vesicatoria ATCC 35937]
Length = 491
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI+++Y+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVVYVGLVALVQDDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 356 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 269 SLIAVVYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GTSGFVGE 394
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ +++ + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 263 WLVITLSLIAVVYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 319
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 320 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 377
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 378 FFMANAGLPGTSGFVGEFMVILASFQKHPL 407
>gi|254469064|ref|ZP_05082470.1| NADH dehydrogenase i, chain m [beta proteobacterium KB13]
gi|207087874|gb|EDZ65157.1| NADH dehydrogenase i, chain m [beta proteobacterium KB13]
Length = 491
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/377 (55%), Positives = 287/377 (76%), Gaps = 3/377 (0%)
Query: 213 FSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMS 271
FSGF ++ WI++F+I Y LG+DG+SL + LT+FI+ ++I IS + I++ + Y+S
Sbjct: 57 FSGFQFQEIYP-WINHFSINYHLGLDGISLPLVLLTSFISWLVIFISSNSIQRAIGFYIS 115
Query: 272 AFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSL 331
AFLILSGL+IG F ALD +L+Y+F+EA LIP+F++IG WGG NR YA IKFFLYT++GSL
Sbjct: 116 AFLILSGLMIGVFLALDAILYYVFWEAMLIPMFLLIGIWGGPNRVYATIKFFLYTVLGSL 175
Query: 332 LMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAH 391
LML++ +YLY SF IL ++ ++ Q+ +F+ FF+AFA+KIP+WP+HTWLPDAH
Sbjct: 176 LMLVAFLYLYN-QTASFAILDFYTKPLSLNIQVLIFLAFFMAFAVKIPMWPVHTWLPDAH 234
Query: 392 VEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQ 451
VEAPT GSVILAAIMLKLG Y +RF++PI PDA + +I LSLI+I+YI+ +A+VQ
Sbjct: 235 VEAPTGGSVILAAIMLKLGGYSFIRFAMPISPDALIFLKPFLIGLSLIAIVYIAFVAIVQ 294
Query: 452 IDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
D+KKLIAYSSI+HMGFVTLG+F+L + +G +QMISH IS+A+F +IG LY +M +
Sbjct: 295 TDMKKLIAYSSISHMGFVTLGLFILNPLGFEGGYVQMISHGFISAALFFAIGVLYERMHS 354
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R IS++ G+IN +P F FF++F++AN LPGTSGF+GEF++IL A++ +F I S
Sbjct: 355 RNISDYKGVINSMPIFGSFFVLFAMANSGLPGTSGFVGEFLVILGAMQDHFWIAFFASLT 414
Query: 572 LIFSAAYSLCLSKNIIF 588
LIF A YSL L K IIF
Sbjct: 415 LIFGATYSLWLVKRIIF 431
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 18 ASYLLIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHA 76
AS+ ++ F Y KPL++ + FL + K +P+HTWLPD+ +E PT S ++ A
Sbjct: 189 ASFAILDF-YTKPLSLNIQVLIFLAFFMAFAVKIPMWPVHTWLPDAHVEAPTGGSVIL-A 246
Query: 77 ATMVTAGIFMITRMSPLFELSNTAL----SIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
A M+ G + R + +S AL ++ + I ++ + I+Q D+K++IAYS
Sbjct: 247 AIMLKLGGYSFIRFA--MPISPDALIFLKPFLIGLSLIAIVYIAFVAIVQTDMKKLIAYS 304
Query: 133 TLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
++S +G++T+GL + + +++H F A LF + G + M H+++I + G+
Sbjct: 305 SISHMGFVTLGLFILNPLGFEGGYVQMISHGFISAALFFAIGVLYERM-HSRNISDYKGV 363
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYF 229
MPI ++ ++ G P SGF + + WI +F
Sbjct: 364 INSMPIFGSFFVLFAMANSGLPGTSGFVGEFLVILGAMQDHFWIAFF 410
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 124/283 (43%), Gaps = 43/283 (15%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ A IK+F+ +L S ML LY T + + +
Sbjct: 144 LIPMFLLIGIWGGPNRVY---ATIKFFLYTVLGSLLMLVAFLYLYNQTASFAILDFYT-- 198
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
K ++N VL L + + K+ + P H W+PD + G S+I+ ++ S
Sbjct: 199 KPLSLNIQVLIF--LAFFMAFAVKIPMWPVHTWLPDAHVEAPTGGSVILAAIMLKLGGYS 256
Query: 726 LFVIIYRLLIKCLLPL----VINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
I+ +P+ +I + L+ L++ +++ AI Q + K++IAYSSI+H
Sbjct: 257 F--------IRFAMPISPDALIFLKPFLIGLSLIAIVYIAFVAIVQTDMKKLIAYSSISH 308
Query: 782 M-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK 836
M GL + + + + + +I + LF+ I ++ + ++ N
Sbjct: 309 MGFVTLGLFILNPLGFEGGYVQMISHGFISAALFFAIGVLYE-----------RMHSRNI 357
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+D + G+ P ++F + +G P T GF +F +
Sbjct: 358 SD----YKGVINSMPIFGSFFVLFAMANSGLPGTSGFVGEFLV 396
>gi|294666765|ref|ZP_06731999.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603426|gb|EFF46843.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 477
Score = 411 bits (1057), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 278/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 43 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 102
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 103 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 161
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 162 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 221
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 222 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 281
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 282 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 341
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 342 RRIADYGGVVNVMPWFATFSMLFFTANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 401
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 402 LVITAAYTLWLYKRVFF 418
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 195 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 254
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 255 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 313
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ + G P
Sbjct: 314 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFTANAGLP 372
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 373 GTSGFVGE 380
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 137 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 192
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 193 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 248
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 249 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 305
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 306 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 363
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 364 FFTANAGLPGTSGFVGEFMVILASFQKHPL 393
>gi|254491642|ref|ZP_05104821.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Methylophaga thiooxidans DMS010]
gi|224463120|gb|EEF79390.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Methylophaga thiooxydans DMS010]
Length = 503
Score = 411 bits (1057), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/381 (53%), Positives = 284/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI+ F I Y LG+DG S+ I LT TL++++ + + IK +L++Y++AFLI+ GL
Sbjct: 65 ERHSWIETFAINYHLGVDGFSMPLIILTTISTLLVVVAAWEVIKDRLSQYLAAFLIMEGL 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++ F ALD +LFY+FFEA LIP+F++IG WGG NR YA IKFFLYT GS+ +L++++Y
Sbjct: 125 MLAVFSALDAILFYVFFEAMLIPLFLVIGIWGGPNRVYATIKFFLYTFFGSVFLLVALLY 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
L ++S+ SF IL +H + ++ EQ WL + F IAFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 185 LRHVSD-SFAILDFHNVGLSLKEQTWLLLAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS II+LSLI+I+YI +A+ Q D+KKLIA
Sbjct: 244 VILAAITLKIGGYGFLRFALPIAPDASLVLDWFIISLSLIAIVYIGFVALAQSDLKKLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG+F++ +I +I+GA++QMISH IS+AMF+++G LY+
Sbjct: 304 YSSIAHMGFVTLGLFIIFRIFANASTGTGAVLAIEGAMVQMISHGFISAAMFLAVGVLYD 363
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR IS +GG++N +P F+ F + F++AN LPGTSGF+GEFM+IL+A + NF L
Sbjct: 364 RMHTREISAYGGVVNTMPVFAAFAVFFAMANAGLPGTSGFVGEFMVILAAFQANFWFAFL 423
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L + K + +
Sbjct: 424 AATTLILGAAYTLWMVKRVFY 444
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K +P+HTWLPD+ +E PT S ++ A T+ G + P+ ++ L I+ +
Sbjct: 221 KVPMWPVHTWLPDAHVEAPTGGSVILAAITLKIGGYGFLRFALPIAPDASLVLDWFIISL 280
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---------------GVSAYTVS 152
I ++G + + Q+D+K++IAYS+++ +G++T+GL V A +
Sbjct: 281 SLIAIVYIGFVALAQSDLKKLIAYSSIAHMGFVTLGLFIIFRIFANASTGTGAVLAIEGA 340
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+ +++H F A +FL+ G ++ + H ++I GG+ MP+ ++ ++ G P
Sbjct: 341 MVQMISHGFISAAMFLAVG-VLYDRMHTREISAYGGVVNTMPVFAAFAVFFAMANAGLPG 399
Query: 213 FSGFYSK 219
SGF +
Sbjct: 400 TSGFVGE 406
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 143/308 (46%), Gaps = 32/308 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + I N ++ A IK+F+ S F+L + L ++ + F ++
Sbjct: 145 LIPLFLVIGIWGGPNRVY---ATIKFFLYTFFGSVFLLVALLYLRHVSDS------FAIL 195
Query: 670 KLNNINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPK 723
+N+ S+ + LL+ ++ + K+ + P H W+PD + G S+I L + T K
Sbjct: 196 DFHNVGLSLKEQTWLLLAFLIAFAVKVPMWPVHTWLPDAHVEAPTGGSVI---LAAITLK 252
Query: 724 LSLFVII-YRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
+ + + + L I LV++W ++ L++ +++ A+ Q + K++IAYSSIAHM
Sbjct: 253 IGGYGFLRFALPIAPDASLVLDW--FIISLSLIAIVYIGFVALAQSDLKKLIAYSSIAHM 310
Query: 783 GLM------LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK 836
G + +F I + ++ ++ + + + +I++ F F + +L +
Sbjct: 311 GFVTLGLFIIFRIFANASTGTGAVL--AIEGAMVQMISHGFISAAMFLAVGVLYDRM--H 366
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLII 896
T E+ + G+ P A + F + AG P T GF +F + F+ W L
Sbjct: 367 TREISAYGGVVNTMPVFAAFAVFFAMANAGLPGTSGFVGEFMVILAAFQA-NFWFAFLAA 425
Query: 897 MCSLIGAK 904
++GA
Sbjct: 426 TTLILGAA 433
>gi|418517288|ref|ZP_13083453.1| NADH:ubiquinone oxidoreductase subunit M [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
gi|418520417|ref|ZP_13086466.1| NADH:ubiquinone oxidoreductase subunit M [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
gi|410703798|gb|EKQ62286.1| NADH:ubiquinone oxidoreductase subunit M [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
gi|410706014|gb|EKQ64479.1| NADH:ubiquinone oxidoreductase subunit M [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
Length = 500
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 66 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 126 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 184
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 185 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 244
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 245 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 304
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 305 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 364
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 365 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 424
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 425 LVITAAYTLWLYKRVFF 441
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 218 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 278 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 336
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 337 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 395
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 396 GTSGFVGE 403
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 160 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 215
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 216 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 271
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 272 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVILASFQKHPL 416
>gi|389770621|ref|ZP_10192090.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter sp. 115]
gi|388429655|gb|EIL86941.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter sp. 115]
Length = 502
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/381 (52%), Positives = 278/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ +WI ++Y L +DG+S+ I LT + +++++ + + IK +YM+A L+L GL
Sbjct: 64 ESHVWIASLGVHYGLAVDGISVALIVLTTIVGILVVVGAWEVIKVNTHQYMAAMLVLEGL 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCA D +LFY+FFEA LIP+FI+IG WGG R YA +KFF+YT +GS+ MLI+++Y
Sbjct: 124 MIGVFCATDALLFYVFFEAMLIPMFILIGVWGGPRRVYATLKFFIYTFLGSVFMLIALMY 183
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY S +F++ W L +T EQ WLF F IAFAIK+P+ P+HTWLPDAHVEAPT GS
Sbjct: 184 LYERSG-TFDMHVWASLPLTMKEQTWLFFGFLIAFAIKVPMVPVHTWLPDAHVEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAA+MLK+G YG+LRF LPI PDA +F+ LI+ LSLI+IIYI +A+VQ D+KKL+A
Sbjct: 243 VVLAAVMLKVGTYGMLRFILPIVPDAGEHFTWLIVVLSLIAIIYIGYVALVQEDMKKLVA 302
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLGIF+ ++ +QGA++QMISH +S AMF IG +Y+
Sbjct: 303 YSSIAHMGFVTLGIFIAFMLIRHDGNVDAARLGMQGAMVQMISHGFVSGAMFTCIGVMYD 362
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ TRLI ++GG+INV+P F F+++F++ANC LPGTSGF+GEFM+IL++ N IG+
Sbjct: 363 RLHTRLIKDYGGLINVMPWFGFFYVLFAMANCGLPGTSGFVGEFMVILASFSANPWIGLF 422
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+ LI A Y+L L K +++
Sbjct: 423 AAFTLIIGAGYTLWLVKRVLW 443
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 114/245 (46%), Gaps = 27/245 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W PL + F I K P+HTWLPD+ +E PT S ++ AA M+ G
Sbjct: 196 WASLPLTMKEQTWLFFGFLIAFAIKVPMVPVHTWLPDAHVEAPTGGSVVL-AAVMLKVGT 254
Query: 85 FMITR-MSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ + R + P+ + + +I+ + I ++G + ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGMLRFILPIVPDAGEHFTWLIVVLSLIAIIYIGYVALVQEDMKKLVAYSSIAHMGFVTL 314
Query: 143 GLGVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
G+ ++ + ++ +++H F +F G ++ + H + I++ G
Sbjct: 315 GIFIAFMLIRHDGNVDAARLGMQGAMVQMISHGFVSGAMFTCIG-VMYDRLHTRLIKDYG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYFNIYYFLGIDGL 240
GL MP ++ ++ G P SGF + WI F + + G
Sbjct: 374 GLINVMPWFGFFYVLFAMANCGLPGTSGFVGEFMVILASFSANPWIGLFAAFTLIIGAGY 433
Query: 241 SLWFI 245
+LW +
Sbjct: 434 TLWLV 438
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 27/285 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A +K+FI L S FML + LY +GT ++ ++ + L + L L +
Sbjct: 162 ATLKFFIYTFLGSVFMLIALMYLYERSGTFDMH-VWASLPLTMKEQTWLFFGFL---IAF 217
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN-- 744
+ K+ + P H W+PD + G S+++ ++ L V Y +L + +LP+V +
Sbjct: 218 AIKVPMVPVHTWLPDAHVEAPTGGSVVLAAVM-------LKVGTYGML-RFILPIVPDAG 269
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI----ISIKTSHNN 798
+ ++++L++ ++I A+ Q + K+++AYSSIAHMG + I + I+ N
Sbjct: 270 EHFTWLIVVLSLIAIIYIGYVALVQEDMKKLVAYSSIAHMGFVTLGIFIAFMLIRHDGNV 329
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+ +I++ F F I ++ + T + + GL PW +
Sbjct: 330 DAARLGMQGAMVQMISHGFVSGAMFTCIGVMYDRL--HTRLIKDYGGLINVMPWFGFFYV 387
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
+F + G P T GF +F + F W+ L +IGA
Sbjct: 388 LFAMANCGLPGTSGFVGEFMVILASFSANP-WIGLFAAFTLIIGA 431
>gi|300113277|ref|YP_003759852.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Nitrosococcus watsonii C-113]
gi|299539214|gb|ADJ27531.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrosococcus watsonii C-113]
Length = 504
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/405 (50%), Positives = 291/405 (71%), Gaps = 20/405 (4%)
Query: 203 GLLSLVGAPFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
GL +V ++GF + +K W++ F++YY LGIDG+S+ I LT F T++++
Sbjct: 41 GLTFVVSWSLYTGFDTSTAAMQFQEKLSWVETFDVYYHLGIDGISMPLIILTTFSTVLVV 100
Query: 257 LISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
+ I+ KLA+YM++FLI+ GL+ G F ALD +LFY FFE LIP+F+IIG WGG NR
Sbjct: 101 VAGWRVIEHKLAQYMASFLIMEGLMNGVFAALDAVLFYFFFEGMLIPLFLIIGIWGGPNR 160
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YA +KFFLYT +GS+ L++++YL ++ F+IL +HQ+ + QI +F+ F +AFA
Sbjct: 161 IYATLKFFLYTFLGSVFFLLALLYLRSVTG-GFSILEFHQVPLDMQAQIGIFLAFLLAFA 219
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+WP+HTWLPDAHVEAPT GSVILAAI LK+G YG +RFSLPI PDAS + LIIT
Sbjct: 220 VKVPMWPVHTWLPDAHVEAPTGGSVILAAITLKIGAYGFMRFSLPITPDASMALNWLIIT 279
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI------------SIQG 483
LSLI+++YI L+A+VQ D+KKLIAYSSIAHMGFVTLG+F+ I ++G
Sbjct: 280 LSLIAVVYIGLVAIVQEDLKKLIAYSSIAHMGFVTLGLFIAFAIFSQSIEGDGALLGLEG 339
Query: 484 AIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
A++QMISH L+S+AMF+ +G LY++++TRLI ++GG++N +P F+ ++F++AN LPG
Sbjct: 340 ALVQMISHGLVSAAMFLCVGVLYDRLRTRLIKDYGGVVNRMPIFASLMVLFAMANVGLPG 399
Query: 544 TSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
TSGF+GEF++IL A + +F S LI A Y+L + K ++F
Sbjct: 400 TSGFVGEFLVILGAFQADFWYAFFASMTLILGATYTLWMIKRVVF 444
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 111/211 (52%), Gaps = 20/211 (9%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+ PL + A + FL + K +P+HTWLPD+ +E PT S ++ A T+ G +
Sbjct: 198 HQVPLDMQAQIGIFLAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAITL-KIGAY 256
Query: 86 MITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+ ++ AL+ +I+ + I ++GL+ I+Q D+K++IAYS+++ +G++T+G
Sbjct: 257 GFMRFSLPITPDASMALNWLIITLSLIAVVYIGLVAIVQEDLKKLIAYSSIAHMGFVTLG 316
Query: 144 LGVS---------------AYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
L ++ ++ +++H A +FL G ++ + + I++ GG
Sbjct: 317 LFIAFAIFSQSIEGDGALLGLEGALVQMISHGLVSAAMFLCVG-VLYDRLRTRLIKDYGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ MPI ++ ++ VG P SGF +
Sbjct: 376 VVNRMPIFASLMVLFAMANVGLPGTSGFVGE 406
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 142/308 (46%), Gaps = 32/308 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + I N I+ A +K+F+ L S F L + L +TG F+++
Sbjct: 145 LIPLFLIIGIWGGPNRIY---ATLKFFLYTFLGSVFFLLALLYLRSVTGG------FSIL 195
Query: 670 KLNNINCSVLALS--LLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPK 723
+ + + + A L ++ + K+ + P H W+PD + G S+I L + T K
Sbjct: 196 EFHQVPLDMQAQIGIFLAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVI---LAAITLK 252
Query: 724 LSLFVII-YRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
+ + + + L I + +NW +++ L++ +++ + AI Q + K++IAYSSIAHM
Sbjct: 253 IGAYGFMRFSLPITPDASMALNW--LIITLSLIAVVYIGLVAIVQEDLKKLIAYSSIAHM 310
Query: 783 GLML------FSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK 836
G + F+I S + ++ + L +I++ F + +L + +
Sbjct: 311 GFVTLGLFIAFAIFSQSIEGDGALL--GLEGALVQMISHGLVSAAMFLCVGVLYDRL--R 366
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLII 896
T + + G+ R P A +M++F + G P T GF +F + F+ W
Sbjct: 367 TRLIKDYGGVVNRMPIFASLMVLFAMANVGLPGTSGFVGEFLVILGAFQAD-FWYAFFAS 425
Query: 897 MCSLIGAK 904
M ++GA
Sbjct: 426 MTLILGAT 433
>gi|346725515|ref|YP_004852184.1| NADH dehydrogenase subunit M [Xanthomonas axonopodis pv. citrumelo
F1]
gi|346650262|gb|AEO42886.1| NADH dehydrogenase subunit M [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 500
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 66 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 126 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 184
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 185 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 244
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 245 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 304
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 305 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 364
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 365 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFGAATT 424
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 425 LVITAAYTLWLYKRVFF 441
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 218 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 278 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 336
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 337 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 395
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 396 GTSGFVGE 403
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 160 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 215
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 216 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 271
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 272 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVILASFQKHPL 416
>gi|325921399|ref|ZP_08183256.1| NADH dehydrogenase subunit M [Xanthomonas gardneri ATCC 19865]
gi|325548157|gb|EGD19154.1| NADH dehydrogenase subunit M [Xanthomonas gardneri ATCC 19865]
Length = 491
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/377 (53%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTLGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMGFVTLGTFIAFTLVRDYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + I +T
Sbjct: 356 RRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLIAFGAATT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 269 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVRDYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GTSGFVGE 394
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 130/271 (47%), Gaps = 26/271 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-LFSIISIKTSHNNLIIFNSC 805
+++ L++ ++I + A+ Q + K+++AYSSIAHMG + L + I+ + + S
Sbjct: 263 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFIAFTLVRD----YGST 318
Query: 806 DS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
D+ + +I++ F F I +L + T + + G+ PW A M
Sbjct: 319 DAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFAM 376
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+F + AG P T GF +F + F+ +
Sbjct: 377 LFFMANAGLPGTSGFVGEFMVILASFQKHPL 407
>gi|78048397|ref|YP_364572.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036827|emb|CAJ24520.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 500
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 66 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 126 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 184
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 185 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 244
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 245 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 304
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 305 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 364
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 365 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFGAATT 424
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 425 LVITAAYTLWLYKRVFF 441
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 218 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 278 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 336
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 337 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 395
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 396 GTSGFVGE 403
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 160 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 215
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + +
Sbjct: 216 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 271
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 272 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVILASFQKHPL 416
>gi|117926897|ref|YP_867514.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Magnetococcus marinus MC-1]
gi|117610653|gb|ABK46108.1| NADH dehydrogenase subunit M [Magnetococcus marinus MC-1]
Length = 497
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 302/430 (70%), Gaps = 12/430 (2%)
Query: 178 KHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA--PFFSGFYSKDKKKIWIDYFNIYYFL 235
+ DI + M I+ + ++ LL L G P +GF ++ W+ I+Y +
Sbjct: 22 RQRDDIARLAA----MGISTVVLILSLL-LYGEFDPSVAGF-QFTQEAAWLPALGIHYRM 75
Query: 236 GIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYI 294
G+DG+S F+ LTA +T I IL S I+K++ EYM+AFL L +IG FCALD LFY+
Sbjct: 76 GVDGISYPFVMLTALLTPICILASWQSIQKRVKEYMAAFLALESFVIGVFCALDFALFYV 135
Query: 295 FFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWH 354
+EA LIP+F+IIG WGG NR YAA+KFFLYTL GS+LML++MI LY ++ +F+I
Sbjct: 136 LWEAMLIPMFLIIGVWGGQNRVYAAMKFFLYTLAGSVLMLVAMISLY-VTTGTFSIPELM 194
Query: 355 QLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGL 414
++ + Q+WLF+ FFIAFA+K+P+WP HTWLPDAHV+APT GSVILA I+LK+G YG
Sbjct: 195 EVQLPFNYQMWLFLAFFIAFAVKVPMWPFHTWLPDAHVQAPTAGSVILAGILLKMGAYGF 254
Query: 415 LRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIF 474
LRFSLPI PDAS Y ++ I LSL++I+Y +L+A+VQ D+KKLIAYSS++HMGFVT+GIF
Sbjct: 255 LRFSLPILPDASRYMADFIFVLSLVAIVYTALVALVQTDMKKLIAYSSVSHMGFVTIGIF 314
Query: 475 MLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIF 534
+ I+G+I+QMI+H ++S A+F+ +G +Y+++ TR +S FGG+ +P ++V F++F
Sbjct: 315 AFNQQGIEGSILQMINHGIVSGALFLIVGVIYDRLHTRELSRFGGLAIRMPIYAVIFMLF 374
Query: 535 SLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
++A+ LPGT+GFIGEF+I++ A N + + +T L+ AAY L L K ++F G+M+
Sbjct: 375 TMASVGLPGTNGFIGEFLILMGAFFANTTVAFVAATGLVLGAAYMLWLYKQVMF--GEMV 432
Query: 595 MISGNNLLSI 604
+L+ +
Sbjct: 433 HEENRSLMDV 442
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 101/186 (54%), Gaps = 14/186 (7%)
Query: 40 FLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELS 97
FL I K +P HTWLPD+ ++ PT A ++I A ++ G + R S P+ +
Sbjct: 207 FLAFFIAFAVKVPMWPFHTWLPDAHVQAPT-AGSVILAGILLKMGAYGFLRFSLPILPDA 265
Query: 98 NTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYT 150
+ ++ +F+ ++ A + L+ ++Q D+K++IAYS++S +G++T+G+ G+
Sbjct: 266 SRYMADFIFVLSLVAIVYTALVALVQTDMKKLIAYSSVSHMGFVTIGIFAFNQQGIEG-- 323
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
SI ++ H LFL G +I + H +++ GGL MPI + ++ ++ VG
Sbjct: 324 -SILQMINHGIVSGALFLIVG-VIYDRLHTRELSRFGGLAIRMPIYAVIFMLFTMASVGL 381
Query: 211 PFFSGF 216
P +GF
Sbjct: 382 PGTNGF 387
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 35/284 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + +N ++ AA+K+F+ + S ML + LY TGT + + V
Sbjct: 141 LIPMFLIIGVWGGQNRVY---AAMKFFLYTLAGSVLMLVAMISLYVTTGTFSIPELMEVQ 197
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
N + L + + K+ + PFH W+PD + A +++L+ + L +
Sbjct: 198 LPFNYQMWLF----LAFFIAFAVKVPMWPFHTWLPDAHVQAPTAGSVILA---GILLKMG 250
Query: 730 IYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
Y L + LP++ + + + +L++ +++ + A+ Q + K++IAYSS++HMG +
Sbjct: 251 AYGFL-RFSLPILPDASRYMADFIFVLSLVAIVYTALVALVQTDMKKLIAYSSVSHMGFV 309
Query: 786 LFSIIS-----IKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDEL 840
I + I+ S +I LF I+ I+ L T EL
Sbjct: 310 TIGIFAFNQQGIEGSILQMINHGIVSGALFLIVGVIYDRL---------------HTREL 354
Query: 841 DIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
F GL R P A+I M+F + G P T GF +F I F
Sbjct: 355 SRFGGLAIRMPIYAVIFMLFTMASVGLPGTNGFIGEFLILMGAF 398
>gi|110633388|ref|YP_673596.1| NADH dehydrogenase subunit M [Chelativorans sp. BNC1]
gi|110284372|gb|ABG62431.1| NADH dehydrogenase subunit M [Chelativorans sp. BNC1]
Length = 501
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/411 (50%), Positives = 293/411 (71%), Gaps = 10/411 (2%)
Query: 180 NQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDG 239
++IRN+ L T T ++ L +G + + + +K+ W+D I Y +G+DG
Sbjct: 32 RRNIRNVALL-----TTVFTFILSLFIWIGFDYTTPGFQMVEKREWLDS-GISYHMGVDG 85
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+S+ F+ LT F+ IL S + I ++ EYM AFLIL L+IG FCALD +LFY+FFEA
Sbjct: 86 ISMLFVILTTFLMPFCILASWEAIDSRVKEYMIAFLILETLMIGVFCALDIVLFYVFFEA 145
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWHQLS 357
LIP+FIIIG WGG R YA+ KFFLYTL GS+LML++M+ +++ S + L H
Sbjct: 146 GLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAMMAMFWQSGTTDIPTLLTHAFP 205
Query: 358 ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRF 417
+ Q WL+I FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G YG LRF
Sbjct: 206 VQM--QYWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRF 263
Query: 418 SLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLT 477
SLP+FP+AS F+ + TLS+++IIY SL+AM+Q DIKKLIAYSS+AHMGFVT+GIF +
Sbjct: 264 SLPMFPEASAEFAPFVFTLSVVAIIYTSLVAMMQDDIKKLIAYSSVAHMGFVTMGIFAMN 323
Query: 478 KISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ +QGAI QM+SH L+S A+F+ +G +Y++M TR IS +GG++N +P ++V F++F++A
Sbjct: 324 EQGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREISAYGGLVNNMPKYAVAFMVFTMA 383
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
N LPGTSGF+GEF+ + +A + N + +T ++ SAAY+L L + +IF
Sbjct: 384 NVGLPGTSGFVGEFLTLFAAFQVNTWVAFFATTGVVLSAAYALWLYRRVIF 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 107/196 (54%), Gaps = 21/196 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPEASAEFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q+DIK++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMMQDDIKKLIAYSSVAHMGFVTMGIFAMNEQGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF---- 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREISAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGEF 397
Query: 217 ---YSKDKKKIWIDYF 229
++ + W+ +F
Sbjct: 398 LTLFAAFQVNTWVAFF 413
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 112/260 (43%), Gaps = 24/260 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML + ++ +GT ++ ++ + + +
Sbjct: 165 ASFKFFLYTLAGSVLMLLAMMAMFWQSGTTDIPTLLT----HAFPVQMQYWLWIAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
+ K+ + P H W+PD + G+ I+ +LL K+ + + R + +
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILL----KMGGYGFL-RFSLPMFPEASAEF 275
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
+ L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 276 APFVFTLSVVAIIYTSLVAMMQDDIKKLIAYSSVAHMGFVTMGIFAMNEQGVQGAIFQML 335
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
GL + GA + + + + + T E+ + GL P A+ M+F +
Sbjct: 336 SHGL---------VSGALFLCVGVIYDRMH-TREISAYGGLVNNMPKYAVAFMVFTMANV 385
Query: 866 GFPPTIGFYAKFFIFEKIFE 885
G P T GF +F F+
Sbjct: 386 GLPGTSGFVGEFLTLFAAFQ 405
>gi|289665185|ref|ZP_06486766.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 491
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 278/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+I LSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQEDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMGFVTLGTFIAFTLVRDYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 356 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVIAL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 269 SLIAVIYVGLVALVQEDMKKLVAYSSIAHMGFVTLGTFI-AFTLVRDYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GTSGFVGE 394
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 130/271 (47%), Gaps = 26/271 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-LFSIISIKTSHNNLIIFNSC 805
+++ L++ ++I + A+ Q + K+++AYSSIAHMG + L + I+ + + S
Sbjct: 263 WLVIALSLIAVIYVGLVALVQEDMKKLVAYSSIAHMGFVTLGTFIAFTLVRD----YGST 318
Query: 806 DS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
D+ + +I++ F F I +L + T + + G+ PW A M
Sbjct: 319 DAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSM 376
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+F + AG P T GF +F + F+ +
Sbjct: 377 LFFMANAGLPGTSGFVGEFMVILASFQKHPL 407
>gi|289667367|ref|ZP_06488442.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 491
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 278/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+I LSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQEDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMGFVTLGTFIAFTLVRDYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 356 RRIADYGGVVNVMPWFATFSMLFFMANSGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVIAL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 269 SLIAVIYVGLVALVQEDMKKLVAYSSIAHMGFVTLGTFI-AFTLVRDYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANSGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GTSGFVGE 394
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 130/271 (47%), Gaps = 26/271 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-LFSIISIKTSHNNLIIFNSC 805
+++ L++ ++I + A+ Q + K+++AYSSIAHMG + L + I+ + + S
Sbjct: 263 WLVIALSLIAVIYVGLVALVQEDMKKLVAYSSIAHMGFVTLGTFIAFTLVRD----YGST 318
Query: 806 DS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
D+ + +I++ F F I +L + T + + G+ PW A M
Sbjct: 319 DAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSM 376
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+F + +G P T GF +F + F+ +
Sbjct: 377 LFFMANSGLPGTSGFVGEFMVILASFQKHPL 407
>gi|118602287|ref|YP_903502.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567226|gb|ABL02031.1| NADH dehydrogenase subunit M [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 501
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/403 (52%), Positives = 293/403 (72%), Gaps = 23/403 (5%)
Query: 204 LLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIIL 257
L+ ++ ++GF S +K+ WI NI+Y +G+DG+S+ I LT F T+++I+
Sbjct: 41 LVFMISLSLYTGFDSSTHLMQFVEKESWILQLNIHYHIGVDGISMPLIILTTFSTILVIV 100
Query: 258 ISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS 316
+ I K+ A YM+AFL++ GLIIG F +LD +LFY F+EA+LIP+ +IIG WGG NR
Sbjct: 101 AGWEVIAKRCAHYMAAFLMMEGLIIGVFSSLDAILFYAFWEASLIPMLLIIGIWGGDNRV 160
Query: 317 YAAIKFFLYTLMGSLLMLISMIYLYYISNK--SFNILSWHQLSITKIEQIWLFITFFIAF 374
YA+IKFFLYT +GS+ ML+S IY++ NK SF IL H L ++ EQ ++F FF+AF
Sbjct: 161 YASIKFFLYTFLGSVFMLVSFIYMH---NKGGSFLILDMHNLELSLEEQSYIFWAFFMAF 217
Query: 375 AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLII 434
A+K+P++P+HTWLPDAHV+APT GSVILAAIMLK+G YG RFSLPI PDAS FS +II
Sbjct: 218 AVKVPMFPVHTWLPDAHVQAPTGGSVILAAIMLKMGGYGFFRFSLPITPDASLEFSEIII 277
Query: 435 TLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML-----------TKISIQG 483
LSLI+I+YI +A+VQ D+KKLIAYSSI+HMGFVTLG+F L + ++G
Sbjct: 278 VLSLIAIVYIGFVALVQRDMKKLIAYSSISHMGFVTLGVFTLFLTYKPDTIEGALLGLEG 337
Query: 484 AIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
A++QMISH IS+AMF+ +G LY+++ +R IS +GG+IN +P F+ F ++F++AN LPG
Sbjct: 338 AMVQMISHGFISAAMFLVVGVLYDRLHSREISTYGGVINSMPKFTGFALLFAMANVGLPG 397
Query: 544 TSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
TSGF+GEFM+IL A++ N GVL ++ LI AAY+L + K +
Sbjct: 398 TSGFVGEFMVILGAIQANIWYGVLVASTLIVGAAYTLWMVKRV 440
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 101/190 (53%), Gaps = 25/190 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K FP+HTWLPD+ ++ PT S ++ AA M+ G + R S P+ ++ S II+
Sbjct: 220 KVPMFPVHTWLPDAHVQAPTGGSVIL-AAIMLKMGGYGFFRFSLPITPDASLEFSEIIIV 278
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-----------------LGVSAY 149
+ I ++G + ++Q D+K++IAYS++S +G++T+G LG+
Sbjct: 279 LSLIAIVYIGFVALVQRDMKKLIAYSSISHMGFVTLGVFTLFLTYKPDTIEGALLGLEGA 338
Query: 150 TVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
V +++H F A +FL G ++ + H+++I GG+ MP +L+ ++ VG
Sbjct: 339 MV---QMISHGFISAAMFLVVG-VLYDRLHSREISTYGGVINSMPKFTGFALLFAMANVG 394
Query: 210 APFFSGFYSK 219
P SGF +
Sbjct: 395 LPGTSGFVGE 404
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 140/305 (45%), Gaps = 25/305 (8%)
Query: 609 ELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNV 668
L+ + L + I N +++S IK+F+ L S FML ++ G+ F +
Sbjct: 143 SLIPMLLIIGIWGGDNRVYAS---IKFFLYTFLGSVFMLVSFIYMHNKGGS------FLI 193
Query: 669 IKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLLLSTTP 722
+ ++N+ S+ S + ++F K+ + P H W+PD + G S+I+ ++
Sbjct: 194 LDMHNLELSLEEQSYIFWAFFMAFAVKVPMFPVHTWLPDAHVQAPTGGSVILAAIMLKMG 253
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
F R + + + +I+++L++ +++ A+ Q + K++IAYSSI+HM
Sbjct: 254 GYGFF----RFSLPITPDASLEFSEIIIVLSLIAIVYIGFVALVQRDMKKLIAYSSISHM 309
Query: 783 GLMLFSIISIKTSHNNLIIFNS---CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE 839
G + + ++ ++ I + + + +I++ F F V+ +L + ++ E
Sbjct: 310 GFVTLGVFTLFLTYKPDTIEGALLGLEGAMVQMISHGFISAAMFLVVGVLYDRLHSR--E 367
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCS 899
+ + G+ P ++F + G P T GF +F + + IW +L+
Sbjct: 368 ISTYGGVINSMPKFTGFALLFAMANVGLPGTSGFVGEFMVILGAIQA-NIWYGVLVASTL 426
Query: 900 LIGAK 904
++GA
Sbjct: 427 IVGAA 431
>gi|325267333|ref|ZP_08133995.1| NADH-quinone oxidoreductase subunit M [Kingella denitrificans ATCC
33394]
gi|324981270|gb|EGC16920.1| NADH-quinone oxidoreductase subunit M [Kingella denitrificans ATCC
33394]
Length = 499
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/383 (53%), Positives = 279/383 (72%), Gaps = 9/383 (2%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
SG Y + WI N+ Y LG+DG+S+ FI L +FITL+++L I+K+ A+YM+A
Sbjct: 59 SGGYQFQELHAWIPALNLNYALGVDGISVLFIILNSFITLMVVLAGWQVIQKRAAQYMAA 118
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FLI++GLI GAF A D +LFY+FFE LIP+++IIG WGG+ R YAA+K FLYTL GSLL
Sbjct: 119 FLIMTGLINGAFAARDAILFYVFFEGMLIPLYLIIGMWGGARRMYAAMKLFLYTLAGSLL 178
Query: 333 MLISMIYLYYISNKSFNILSWHQL-SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAH 391
MLI++IYL +SF I L +I Q LF+ FF++FA+K+P++P+HTWLPDAH
Sbjct: 179 MLIALIYLG-AQAESFMITDLQNLKNIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAH 237
Query: 392 VEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQ 451
VEAPT GS++LAAI LK+G YG LRF+LPI PDAS YF+ II LSLI+++YI L+A+VQ
Sbjct: 238 VEAPTGGSMVLAAITLKVGAYGFLRFALPILPDASRYFAPAIIVLSLIAVVYIGLVALVQ 297
Query: 452 IDIKKLIAYSSIAHMGFVTLGIFML------TKISIQGAIIQMISHALISSAMFISIGFL 505
D+KKL+AYSSI+HMGFVTLG FM +GAI+QMISH +S+AMF IG +
Sbjct: 298 TDMKKLVAYSSISHMGFVTLGFFMFMANGQPEAWGFKGAIMQMISHGFVSAAMFFCIGVM 357
Query: 506 YNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
Y+++ TR I+++GG++NV+P F+ F ++F +AN LP TSGF+GEFM+I+ A ++ +G
Sbjct: 358 YDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGATHYHLGVG 417
Query: 566 VLTSTALIFSAAYSLCLSKNIIF 588
L + LI A+Y+L + K IF
Sbjct: 418 ALAAVTLILGASYTLWMYKRTIF 440
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATM-VTAGIFMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A T+ V A F+ + L + S I+ +
Sbjct: 223 KVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFALPILPDASRYFAPAIIVL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---------GVSAYTVSIFHLMT 158
I ++GL+ ++Q D+K+++AYS++S +G++T+G + +I +++
Sbjct: 283 SLIAVVYIGLVALVQTDMKKLVAYSSISHMGFVTLGFFMFMANGQPEAWGFKGAIMQMIS 342
Query: 159 HAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
H F A +F G ++ + H ++I + GG+ MP ++ ++ G P SGF
Sbjct: 343 HGFVSAAMFFCIG-VMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVG 401
Query: 219 K 219
+
Sbjct: 402 E 402
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 120/264 (45%), Gaps = 37/264 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K F+ + S ML I+++Y + E I ++ L NI V L + +
Sbjct: 164 AAMKLFLYTLAGSLLML--IALIY-LGAQAESFMITDLQNLKNIPLGVQQLLFVAFFLSF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L V Y L + LP++ + +
Sbjct: 221 AVKVPMFPVHTWLPDAHVEAPTGGSMVLAA---ITLKVGAYGFL-RFALPILPDASRYFA 276
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII-----------SIKTS 795
+++L++ +++ + A+ Q + K+++AYSSI+HMG + K +
Sbjct: 277 PAIIVLSLIAVVYIGLVALVQTDMKKLVAYSSISHMGFVTLGFFMFMANGQPEAWGFKGA 336
Query: 796 HNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
+I + +F+ I ++ L +T N D + G+ P A
Sbjct: 337 IMQMISHGFVSAAMFFCIGVMYDRL-----------HTRNIAD----YGGVVNVMPKFAA 381
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFI 879
MM+F + AG P T GF +F +
Sbjct: 382 FMMLFGMANAGLPATSGFVGEFMV 405
>gi|384419833|ref|YP_005629193.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Xanthomonas oryzae
pv. oryzicola BLS256]
gi|353462746|gb|AEQ97025.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 500
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/377 (52%), Positives = 278/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 66 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 126 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 184
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 185 KGGSFQLADLYSLQLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 244
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+I LSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 245 AIALKIGGYGFLRFNLPILPDASHEFAWLVIALSLIAVIYVGLVALVQDDMKKLVAYSSI 304
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 305 AHMGFVTLGTFIAFTLLREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 364
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 365 RRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATT 424
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 425 LVITAAYTLWLYKRVFF 441
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + L + S+ +++ +
Sbjct: 218 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASHEFAWLVIAL 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 278 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLLREYGSTDAARLGLQG 336
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 337 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLP 395
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 396 GTSGFVGE 403
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 130/270 (48%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L +++ ++L+ + + + L +
Sbjct: 160 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLYS-LQLSAKEQTWIFFAFL---IAF 215
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP++ +
Sbjct: 216 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPILPDASHEFA 271
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + L + S D
Sbjct: 272 WLVIALSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLLREYGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFAML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVILASFQKHPL 416
>gi|188577684|ref|YP_001914613.1| NADH dehydrogenase subunit M [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522136|gb|ACD60081.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 491
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/377 (52%), Positives = 277/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+I LSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQDDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + T
Sbjct: 356 RRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAGTT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVIAL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 269 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GTSGFVGE 394
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L+ + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLSAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 263 WLVIALSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 319
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 320 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFAML 377
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 378 FFMANAGLPGTSGFVGEFMVILASFQKHPL 407
>gi|297538944|ref|YP_003674713.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylotenera versatilis 301]
gi|297258291|gb|ADI30136.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylotenera versatilis 301]
Length = 508
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/402 (52%), Positives = 301/402 (74%), Gaps = 10/402 (2%)
Query: 196 TCITSLIGLLS--LVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPL 247
T +LIG L+ LV P ++ F D + WI F+I Y LG DG+++ I L
Sbjct: 41 TRWVALIGGLAAFLVTIPLYTHFNFADGGFQFQEGFNWIPAFHINYHLGADGIAIPLILL 100
Query: 248 TAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFII 306
T+F T+I+I+ + + I+K++A+YM++FLI+SGL+IG F ALD +L+Y+F+EA LIP+F++
Sbjct: 101 TSFTTVIVIISAWEVIEKRVAQYMASFLIMSGLMIGVFSALDAILYYVFWEAMLIPMFLV 160
Query: 307 IGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWL 366
IG WGG NR YA +KFFLYTL+GSLLML++ IYLY +N SF I+ ++ + Q+ +
Sbjct: 161 IGIWGGPNRVYATVKFFLYTLLGSLLMLVAFIYLYMNTN-SFEIVDFYNYQMPLNVQVLI 219
Query: 367 FITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
F+ FF AFA+KIP+WP+HTWLPDAHVEAPT GSV+LAAI LKLG Y LRF++PI PDA+
Sbjct: 220 FLAFFAAFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAAIALKLGGYSFLRFAMPIAPDAA 279
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
+Y S +ITLSLI+I+YI+L+A+VQ D+KKLIAYSSI+HMGFVTLG F+ + ++GAI+
Sbjct: 280 HYLSGFMITLSLIAIVYIALVALVQKDMKKLIAYSSISHMGFVTLGFFIFNNLGLEGAIV 339
Query: 487 QMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSG 546
QM+SH IS+AMF+ +G LY+++ +R I ++GG+ N +P F+ F ++F++AN LPGTSG
Sbjct: 340 QMVSHGFISAAMFLCVGVLYDRVHSREIKSYGGVANTMPTFAAFAVLFAMANSGLPGTSG 399
Query: 547 FIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+GEFM+IL A++ NF L S LIF AAY+L + K + +
Sbjct: 400 FVGEFMVILGAIQENFWYAFLASFTLIFGAAYTLWMVKRVFY 441
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K +P+HTWLPD+ +E PT S ++ A + G + P+ + LS ++ +
Sbjct: 230 KIPMWPVHTWLPDAHVEAPTGGSVVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITL 289
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHAF 161
I ++ L+ ++Q D+K++IAYS++S +G++T+G LG+ +I +++H F
Sbjct: 290 SLIAIVYIALVALVQKDMKKLIAYSSISHMGFVTLGFFIFNNLGLEG---AIVQMVSHGF 346
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A +FL G ++ + H+++I++ GG+ MP +++ ++ G P SGF +
Sbjct: 347 ISAAMFLCVG-VLYDRVHSREIKSYGGVANTMPTFAAFAVLFAMANSGLPGTSGFVGE 403
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 29/276 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ A +K+F+ +L S ML LY T + E+ +N
Sbjct: 154 LIPMFLVIGIWGGPNRVY---ATVKFFLYTLLGSLLMLVAFIYLYMNTNSFEIVDFYNYQ 210
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
N+ + V K+ + P H W+PD + A +++L+ ++L +
Sbjct: 211 MPLNVQVLIFLAFFAAFAV----KIPMWPVHTWLPDAHVEAPTGGSVVLAA---IALKLG 263
Query: 730 IYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
Y L + +P+ + L + L++ +++ + A+ Q + K++IAYSSI+HMG +
Sbjct: 264 GYSFL-RFAMPIAPDAAHYLSGFMITLSLIAIVYIALVALVQKDMKKLIAYSSISHMGFV 322
Query: 786 LFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
IFN+ + + ++++ F F + +L + ++ E+ +
Sbjct: 323 TL----------GFFIFNNLGLEGAIVQMVSHGFISAAMFLCVGVLYDRVHSR--EIKSY 370
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A ++F + +G P T GF +F +
Sbjct: 371 GGVANTMPTFAAFAVLFAMANSGLPGTSGFVGEFMV 406
>gi|21231948|ref|NP_637865.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767925|ref|YP_242687.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991041|ref|YP_001903051.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. campestris
str. B100]
gi|384428470|ref|YP_005637830.1| NADH-quinone oxidoreductase chain 13 [Xanthomonas campestris pv.
raphani 756C]
gi|21113678|gb|AAM41789.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66573257|gb|AAY48667.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas
campestris pv. campestris str. 8004]
gi|167732801|emb|CAP50995.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas
campestris pv. campestris]
gi|341937573|gb|AEL07712.1| NADH-quinone oxidoreductase chain 13 [Xanthomonas campestris pv.
raphani 756C]
Length = 500
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/381 (51%), Positives = 279/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
++ WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+
Sbjct: 62 EQHAWIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGV 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ +IY
Sbjct: 122 TVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLIY 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 182 LY-LKGGSFQLADLYALQLTAKEQTWIFFAFMIAFAVKVPMFPVHTWLPDAHVEAPTAGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY+ L+A+VQ D+KKL+A
Sbjct: 241 VILAAIALKIGGYGFLRFNLPILPDASNQWAWLVIALSLIAVIYVGLVALVQDDMKKLVA 300
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 301 YSSIAHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYD 360
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + +
Sbjct: 361 RMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFA 420
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T L+ +AAY+L L K + F
Sbjct: 421 AATTLVITAAYTLWLYKRVFF 441
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + L + SN +++ +
Sbjct: 218 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNQWAWLVIAL 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 278 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 336
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 337 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLP 395
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 396 GTSGFVGE 403
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 125/270 (46%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ + + ++
Sbjct: 160 AAMKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLYAL----QLTAKEQTWIFFAFMIAF 215
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP++ + W
Sbjct: 216 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPILPDASNQWA 271
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 272 WLVIALSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFAML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVILASFQKHPL 416
>gi|58582846|ref|YP_201862.1| NADH dehydrogenase subunit M [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84624712|ref|YP_452084.1| NADH dehydrogenase subunit M [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58427440|gb|AAW76477.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas oryzae
pv. oryzae KACC 10331]
gi|84368652|dbj|BAE69810.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
Length = 500
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/377 (52%), Positives = 277/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 66 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 126 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 184
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 185 KGGSFQLADLYALQLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 244
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+I LSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 245 AIALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQDDMKKLVAYSSI 304
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 305 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 364
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + T
Sbjct: 365 RRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAGTT 424
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 425 LVITAAYTLWLYKRVFF 441
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 218 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVIAL 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 278 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 336
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 337 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLP 395
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 396 GTSGFVGE 403
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 130/270 (48%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L+ + + + L +
Sbjct: 160 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLSAKEQTWIFFAFL---IAF 215
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + +
Sbjct: 216 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 271
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 272 WLVIALSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 328
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 329 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFAML 386
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 387 FFMANAGLPGTSGFVGEFMVILASFQKHPL 416
>gi|325924687|ref|ZP_08186125.1| NADH dehydrogenase subunit M [Xanthomonas perforans 91-118]
gi|325544893|gb|EGD16238.1| NADH dehydrogenase subunit M [Xanthomonas perforans 91-118]
Length = 491
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 278/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+ G+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVGGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + + +T
Sbjct: 356 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFGAATT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G + A+T+
Sbjct: 269 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFI-AFTLVREYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GTSGFVGE 394
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K+++AYSSIAHMG F + + + + S D
Sbjct: 263 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMG---FVTLGTFIAFTLVREYGSTD 319
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 320 AARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFSML 377
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 378 FFMANAGLPGTSGFVGEFMVILASFQKHPL 407
>gi|390990552|ref|ZP_10260836.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|372554755|emb|CCF67811.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Xanthomonas axonopodis pv. punicae str. LMG
859]
Length = 491
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/377 (52%), Positives = 278/377 (73%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI +NI Y LG+DG+++ I LT +T++ ++ + I K++ +Y++AFLIL G+ +G
Sbjct: 57 WIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGI 116
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ ++YLY +
Sbjct: 117 FAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLY-L 175
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF + + L +T EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 176 KGGSFQLADLYALQLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILA 235
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI LK+G YG LRF+LPI PDAS+ F+ L+ITLSLI++IY+ L+A+VQ D+KKL+AYSSI
Sbjct: 236 AIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSI 295
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHM FVTLG F+ ++ +QGA++QMISH +S AMF IG LY++M T
Sbjct: 296 AHMSFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHT 355
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG++NV+P F+ F ++F +AN LPG+SGF+GEFM+IL++ + + + +T
Sbjct: 356 RRIADYGGVVNVMPWFATFSMLFFMANAGLPGSSGFVGEFMVILASFQKHPLVAFAAATT 415
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 416 LVITAAYTLWLYKRVFF 432
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 209 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITL 268
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q+D+K+++AYS+++ + ++T+G + A+T+
Sbjct: 269 SLIAVIYVGLVALVQDDMKKLVAYSSIAHMSFVTLGTFI-AFTLVREYGSTDAARLGLQG 327
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G P
Sbjct: 328 AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLP 386
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 387 GSSGFVGE 394
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 130/272 (47%), Gaps = 28/272 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ ++L + + + L +
Sbjct: 151 AAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLY-ALQLTAKEQTWIFFAFL---IAF 206
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 207 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 262
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT--SHNNLIIFNS 804
+++ L++ ++I + A+ Q + K+++AYSSIAHM S +++ T + + + S
Sbjct: 263 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHM-----SFVTLGTFIAFTLVREYGS 317
Query: 805 CDS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
D+ + +I++ F F I +L + T + + G+ PW A
Sbjct: 318 TDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVVNVMPWFATFS 375
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
M+F + AG P + GF +F + F+ +
Sbjct: 376 MLFFMANAGLPGSSGFVGEFMVILASFQKHPL 407
>gi|285017804|ref|YP_003375515.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenaseI chain m)
(ndh-1, chain m) (nuo13) oxidoreductase [Xanthomonas
albilineans GPE PC73]
gi|283473022|emb|CBA15527.1| probable nadh-quinone oxidoreductase chain m (nadh dehydrogenaseI
chain m) (ndh-1, chain m) (nuo13) oxidoreductase protein
[Xanthomonas albilineans GPE PC73]
Length = 500
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/407 (50%), Positives = 291/407 (71%), Gaps = 20/407 (4%)
Query: 201 LIGLLSL-VGAPFFSGF-YSKD-----KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITL 253
L+ LL+ + P +GF Y+ D + WI +NI Y LG DG+++ I LT +T+
Sbjct: 36 LVALLTFALSVPLLTGFDYASDALQFVETHAWIPAYNIGYNLGADGIAVALIVLTTLVTV 95
Query: 254 IIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGG 312
+ ++ + I K++ +Y++AFLIL G+ +G F A D MLFY+FFEA LIP+F+IIG WGG
Sbjct: 96 LALIGAWTSIDKRVNQYVAAFLILEGVTVGIFSATDAMLFYVFFEAMLIPMFLIIGIWGG 155
Query: 313 SNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFI 372
R YAA+KFFLYT +GS+LML+ +IYL Y+ SF + + LS+T EQ WLF F I
Sbjct: 156 PRRIYAAVKFFLYTFLGSVLMLVGLIYL-YLKGGSFQLADLYHLSLTAKEQTWLFFAFLI 214
Query: 373 AFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNL 432
AFA+K+P++P+HTWLPDAHVEAPT GSVILAAI LK+G YG LRF+LPI PDAS ++ L
Sbjct: 215 AFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNEWAWL 274
Query: 433 IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM-----------LTKISI 481
+I LSLI+++Y+ L+A+VQ D+KKLIAYSSIAHMGFVTLG F+ ++ +
Sbjct: 275 VIALSLIAVVYVGLVALVQDDMKKLIAYSSIAHMGFVTLGAFVAFALVGFGSVDAARLGL 334
Query: 482 QGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSL 541
QGA++QMISH +S AMF +G LY++M +R I+++GG++NV+P F+ F ++F +AN L
Sbjct: 335 QGAMVQMISHGFVSGAMFSCVGVLYDRMHSRRIADYGGVVNVMPWFATFAMLFFMANAGL 394
Query: 542 PGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
PGTSGF+GEFM+I+++ + + + +T L+ +AAY+L L + + F
Sbjct: 395 PGTSGFVGEFMVIMASFQTHPLLAFGAATTLVITAAYTLWLYRRVFF 441
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + L + SN +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNEWAWLVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------SI 153
I ++GL+ ++Q+D+K++IAYS+++ +G++T+G V+ V ++
Sbjct: 279 SLIAVVYVGLVALVQDDMKKLIAYSSIAHMGFVTLGAFVAFALVGFGSVDAARLGLQGAM 338
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H F +F G ++ + H++ I + GG+ MP +++ ++ G P
Sbjct: 339 VQMISHGFVSGAMFSCVG-VLYDRMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGT 397
Query: 214 SGFYSK 219
SGF +
Sbjct: 398 SGFVGE 403
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 134/271 (49%), Gaps = 27/271 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L +++ + L + L + L +
Sbjct: 161 AAVKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLYH-LSLTAKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP++ + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPILPDASNEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-LFSIISIKTSHNNLIIFNSC 805
+++ L++ +++ + A+ Q + K++IAYSSIAHMG + L + ++ L+ F S
Sbjct: 273 WLVIALSLIAVVYVGLVALVQDDMKKLIAYSSIAHMGFVTLGAFVAFA-----LVGFGSV 327
Query: 806 DS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
D+ + +I++ F F + +L + ++ + + G+ PW A M
Sbjct: 328 DAARLGLQGAMVQMISHGFVSGAMFSCVGVLYDRMHSR--RIADYGGVVNVMPWFATFAM 385
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+F + AG P T GF +F + F+T +
Sbjct: 386 LFFMANAGLPGTSGFVGEFMVIMASFQTHPL 416
>gi|380512349|ref|ZP_09855756.1| NADH:ubiquinone oxidoreductase subunit M [Xanthomonas sacchari
NCPPB 4393]
Length = 500
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 297/430 (69%), Gaps = 18/430 (4%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFN 230
G++++ ++ + R + + + +T + + L G + SG + WI ++
Sbjct: 18 GALVLAVRDARAAR-----WASLLVALLTFALSVPLLTGFDYTSGALQFVETHAWIPAYD 72
Query: 231 IYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDG 289
I Y LG DG+++ I LT IT++ ++ + I K++ +Y++AFLIL G+ +G F A D
Sbjct: 73 IGYNLGADGIAVALIVLTTLITVLALIGAWASIDKRVNQYVAAFLILEGVTVGIFAATDA 132
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFN 349
MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+ +IYLY + SF
Sbjct: 133 MLFYVFFEAMLIPMFLIIGIWGGPRRIYAAVKFFLYTFLGSVLMLVGLIYLY-LKGGSFQ 191
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
+ +QLS+T EQ WLF F IAFA+K+P++P+HTWLPDAHVEAPT GSVILAAI LK+
Sbjct: 192 LADLYQLSLTSKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKI 251
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YG LRF+LPI PDAS + L+I LSLI++IY+ L+A+VQ D+KKLIAYSSIAHMGFV
Sbjct: 252 GGYGFLRFNLPILPDASNQLAWLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFV 311
Query: 470 TLGIFM-----------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
TLG F+ ++++QG+++QMISH +S AMF +G LY++M TR I+++G
Sbjct: 312 TLGAFVAFALVGSGSGDAAQLALQGSMVQMISHGFVSGAMFSCVGVLYDRMHTRRIADYG 371
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + +T L+ AAY
Sbjct: 372 GVANVMPWFAAFAMLFFMANAGLPGTSGFVGEFMVILASFQSHPLQAFGAATTLVIGAAY 431
Query: 579 SLCLSKNIIF 588
+L L K + F
Sbjct: 432 TLWLYKRVFF 441
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + L + SN +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPILPDASNQLAWLVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS--------------AYTVSI 153
I ++GL+ ++Q+D+K++IAYS+++ +G++T+G V+ A S+
Sbjct: 279 SLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGAFVAFALVGSGSGDAAQLALQGSM 338
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 339 VQMISHGFVSGAMFSCVG-VLYDRMHTRRIADYGGVANVMPWFAAFAMLFFMANAGLPGT 397
Query: 214 SGFYSK 219
SGF +
Sbjct: 398 SGFVGE 403
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 126/265 (47%), Gaps = 15/265 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML G+ LY G+ +L ++ + L + + L + L +
Sbjct: 161 AAVKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLYQ-LSLTSKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCL--LPLVINWQKI 748
+ K+ + P H W+PD + A +++L+ ++L + Y L L LP N
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFLRFNLPILPDASNQLAW 273
Query: 749 LLI-LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG---LMLFSIISIKTSHNNLIIFNS 804
L+I L++ ++I + A+ Q + K++IAYSSIAHMG L F ++ S + +
Sbjct: 274 LVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGAFVAFALVGSGSGDAAQLA 333
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ +I++ F F + +L + T + + G+ PW A M+F +
Sbjct: 334 LQGSMVQMISHGFVSGAMFSCVGVLYDRM--HTRRIADYGGVANVMPWFAAFAMLFFMAN 391
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKI 889
AG P T GF +F + F++ +
Sbjct: 392 AGLPGTSGFVGEFMVILASFQSHPL 416
>gi|427428428|ref|ZP_18918469.1| NADH-ubiquinone oxidoreductase chain M [Caenispirillum salinarum
AK4]
gi|425882161|gb|EKV30843.1| NADH-ubiquinone oxidoreductase chain M [Caenispirillum salinarum
AK4]
Length = 504
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 279/373 (74%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y +++ W+ FNI Y +GIDG+SL+F+ L+ F+T I IL S + + K++ EYM AFL+
Sbjct: 64 YQFTEQQEWLPAFNIGYSMGIDGISLFFVLLSTFLTPICILSSWEAVTKRVKEYMIAFLV 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L +++G FCALD LFYIFFE LIP+FIIIG WGG+ R YAA KFFLYTL+GS+LML+
Sbjct: 124 LETMMVGMFCALDAFLFYIFFEGVLIPMFIIIGVWGGARRVYAAFKFFLYTLLGSVLMLL 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+ + +Y+ + S +I S QIWL++ F +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 184 AFLTMYFTAGTS-DIASLMAYDFAYGMQIWLWLAIFASFAVKVPMWPVHTWLPDAHVEAP 242
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG LRFS+P+ P+A+ F+ L+ TLS+++I+Y S++A+VQ D+K
Sbjct: 243 TAGSVILAGVLLKMGGYGFLRFSVPMLPEATEAFTPLVYTLSVVAIVYTSMVALVQNDMK 302
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
K+IAYSS+AHMG VT+GIF LT+ +++GAI QM+SH ++S A+F+ +G +Y+++ TR I+
Sbjct: 303 KMIAYSSVAHMGMVTIGIFALTQQAVEGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIA 362
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG+ N +P +++ F+IF LA+ LPGTSGF+GEF+IIL + N + +L +T LI
Sbjct: 363 RYGGLANNMPRYALVFMIFMLASVGLPGTSGFVGEFLIILGVFQVNTWVALLAATGLILG 422
Query: 576 AAYSLCLSKNIIF 588
A Y L L + +IF
Sbjct: 423 AMYMLWLYRQVIF 435
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ + A + +++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSVPMLPEATEAFTPLVYT 282
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
++ A + ++ ++QND+K++IAYS+++ +G +T+G L A +IF +++H
Sbjct: 283 LSVVAIVYTSMVALVQNDMKKMIAYSSVAHMGMVTIGIFALTQQAVEGAIFQMLSHGIVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + +I +L+ VG P SGF +
Sbjct: 343 GALFLCVG-VVYDRLHTREIARYGGLANNMPRYALVFMIFMLASVGLPGTSGFVGE 397
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 126/274 (45%), Gaps = 17/274 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML +Y GT ++ S+ + + L I
Sbjct: 166 AAFKFFLYTLLGSVLMLLAFLTMYFTAGTSDIASLMA----YDFAYGMQIWLWLAIFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ K+ + + R + L + ++
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFL-RFSVPMLPEATEAFTPLV 280
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ +++ ++ A+ Q + K+MIAYSS+AHMG++ I ++ IF G+
Sbjct: 281 YTLSVVAIVYTSMVALVQNDMKKMIAYSSVAHMGMVTIGIFALTQQAVEGAIFQMLSHGI 340
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
+ GA + + + + + T E+ + GL P AL+ MIFM + G P
Sbjct: 341 ---------VSGALFLCVGVVYDRLH-TREIARYGGLANNMPRYALVFMIFMLASVGLPG 390
Query: 870 TIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
T GF +F I +F+ W+ LL ++GA
Sbjct: 391 TSGFVGEFLIILGVFQVNT-WVALLAATGLILGA 423
>gi|194366592|ref|YP_002029202.1| NADH dehydrogenase subunit M [Stenotrophomonas maltophilia R551-3]
gi|194349396|gb|ACF52519.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Stenotrophomonas maltophilia R551-3]
Length = 502
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 279/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ WI + I Y LG+DG+++ I LT ++++ ++ + I K++ +Y++AFLIL G+
Sbjct: 63 ETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+++IY
Sbjct: 123 TVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLVALIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-MKGGSFQLADLYALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F+ ++ +QGA++QMISH +S AMF S+G LY+
Sbjct: 302 YSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSSVGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M +R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL+A + N I +
Sbjct: 362 RMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILAAFQRNPWIALG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L L K I F
Sbjct: 422 AATTLIIGAAYTLWLYKRIFF 442
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 105/210 (50%), Gaps = 18/210 (8%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI- 84
Y PL+ F I K FP+HTWLPD+ +E PT S ++ A + G
Sbjct: 196 YALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYG 255
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
F+ + + + S +++ + I ++GL+ ++Q+D+K++IAYS+++ +G++T+G
Sbjct: 256 FLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGT 315
Query: 145 GVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
++ + V ++ +++H F +F S G ++ + H++ I + GG+
Sbjct: 316 FIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSSVG-VLYDRMHSRRIADYGGV 374
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 375 VNVMPWFATFAMLFFMANAGLPGTSGFVGE 404
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 134/282 (47%), Gaps = 19/282 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML + LY G+ +L ++ + L+ + + + L +
Sbjct: 161 AALKFFLYTFLGSVLMLVALIYLYMKGGSFQLADLY-ALPLSAKEQTWIFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASQEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM----LFSIISIKTSHNNLIIF 802
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + ++ ++ + N
Sbjct: 273 WLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAAR 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F + +L + ++ + + G+ PW A M+F
Sbjct: 333 LGLQGAMVQMISHGFVSGAMFSSVGVLYDRMHSR--RIADYGGVVNVMPWFATFAMLFFM 390
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ W+ L +IGA
Sbjct: 391 ANAGLPGTSGFVGEFMVILAAFQRNP-WIALGAATTLIIGAA 431
>gi|395787829|ref|ZP_10467421.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella birtlesii LL-WM9]
gi|395410451|gb|EJF77006.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella birtlesii LL-WM9]
Length = 498
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 285/382 (74%), Gaps = 7/382 (1%)
Query: 213 FSGFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
++GF +K+ ++ FN I+Y +GIDG+S+ F+ L+AF+ IL S + IK KL
Sbjct: 63 WAGFDNKNPSFQMVERFNWLGNGIHYHMGIDGISVLFVVLSAFLLPFCILASWENIKDKL 122
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
YM AFL+L +IG FCALD MLFY+FFE +LIP+FIIIG WGG R YA+IKFFLYT
Sbjct: 123 KAYMIAFLLLEVAVIGVFCALDAMLFYVFFEGSLIPMFIIIGVWGGERRVYASIKFFLYT 182
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML++++ +Y+ + +I + S QIWL++ FF +FA+K+P+WP+HTW
Sbjct: 183 LLGSVLMLVALMAIYW-EAGTLDIPTLLNYSFPAQMQIWLWLAFFASFAVKMPMWPVHTW 241
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSVILA ++LKLG YG LRFSLP+FP AS F+ LI TLSLI+IIY SL
Sbjct: 242 LPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPLASADFAPLIFTLSLIAIIYTSL 301
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+VQ DIKKLIAYSSIAHMG+VT+GIF + IQGAI QM+SH +IS+A+F+ +G +Y
Sbjct: 302 VALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGIISAALFLCVGVIY 361
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TR IS FGG++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N + +
Sbjct: 362 DRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVI 421
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 422 FATTGVILSAAYALYLYQRVVF 443
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPLASADFAPLIFT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 291 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 348 IISAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 405
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 16/260 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ N + + L
Sbjct: 174 ASIKFFLYTLLGSVLMLVALMAIYWEAGTLDIPTLLNY----SFPAQMQIWLWLAFFASF 229
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKIL 749
+ K+ + P H W+PD + A +++L+ L L + + PL ++ ++
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV-LLKLGGYGFLRFSLPMFPLASADFAPLI 288
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+ G+
Sbjct: 289 FTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGI 348
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
A+ GVI T E+ F GL P A++ +IF + G P
Sbjct: 349 ISA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPG 398
Query: 870 TIGFYAKFFIFEKIFETQKI 889
+ GF +F +F+ K+
Sbjct: 399 SSGFLGEFLTLIGVFQVNKL 418
>gi|407893623|ref|ZP_11152653.1| NADH-quinone oxidoreductase chain M [Diplorickettsia massiliensis
20B]
Length = 517
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/414 (50%), Positives = 291/414 (70%), Gaps = 22/414 (5%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ +TSL+ L + P + GF + WI + + Y LG+DG+SL I LT
Sbjct: 47 VALVTSLVSLALCI--PLYLGFDPHLSSMQFQENVSWISAYRVNYALGVDGISLPLILLT 104
Query: 249 AFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
F TL+++L + IK ++A+YM+AFL++ G++IG F A D +LFY+F+EA LIP+++ I
Sbjct: 105 IFTTLLVVLAAWKSIKLRVAQYMAAFLVMQGMMIGTFAATDSILFYVFWEALLIPMYLSI 164
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISN-KSFNILSWHQLSITKIEQIWL 366
G WG +NRSYA+IKFF+YT +GS+LMLI ++YL S F I ++ L +T EQ+W+
Sbjct: 165 GVWGSANRSYASIKFFIYTFLGSVLMLIGLLYLGLKSGIPDFTIAHFYPLKLTMTEQLWI 224
Query: 367 FITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
F F IAFA+KIP+WP HTWLPDAH EAP GSV+LAA+MLKLG YG LRFSLPI PDA
Sbjct: 225 FFAFLIAFAVKIPMWPFHTWLPDAHTEAPAGGSVVLAALMLKLGGYGFLRFSLPIVPDAC 284
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI------- 479
Y +ITLSLI+I+YI ++A+ Q+D+K+LIAYSSIAHMGFV LG FML +I
Sbjct: 285 RYLDVFMITLSLIAIVYIGIVALAQVDMKRLIAYSSIAHMGFVVLGSFMLFEIIKHSHNT 344
Query: 480 -----SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIF 534
S++GA++QMISHA S AMF+++G L ++ TRLI ++GG+ +P + FF++F
Sbjct: 345 LMAYMSLEGAMVQMISHAFSSGAMFLAVGMLAHRFHTRLIKDYGGLALRMPVLASFFMLF 404
Query: 535 SLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+++N LPGTSGF+GEFMI+LSA++ +F I + +T LI SAAY+L L K + F
Sbjct: 405 AMSNVGLPGTSGFVGEFMILLSAMQGSFWITFIAATTLILSAAYTLTLYKRVFF 458
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 126/266 (47%), Gaps = 30/266 (11%)
Query: 629 SEAAIKYFILGILSSGFMLYGISILYGITGTLELQ-SIFNVIKLNNINCSVLALSLLLII 687
S A+IK+FI L S ML G+ L +G + + F +KL + + L
Sbjct: 173 SYASIKFFIYTFLGSVLMLIGLLYLGLKSGIPDFTIAHFYPLKLTMTEQLWIFFAFL--- 229
Query: 688 VGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
+ + K+ + PFH W+PD + G S+++ L+ ++ LP+V
Sbjct: 230 IAFAVKIPMWPFHTWLPDAHTEAPAGGSVVLAALMLKLGGYGF--------LRFSLPIVP 281
Query: 744 NWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIK 793
+ + L + L++ +++ + A+ Q + KR+IAYSSIAHMG MLF I IK
Sbjct: 282 DACRYLDVFMITLSLIAIVYIGIVALAQVDMKRLIAYSSIAHMGFVVLGSFMLFEI--IK 339
Query: 794 TSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWC 853
SHN L+ + S + + +I++ F+ F + +L + T + + GL R P
Sbjct: 340 HSHNTLMAYMSLEGAMVQMISHAFSSGAMFLAVGMLAHRF--HTRLIKDYGGLALRMPVL 397
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A M+F S G P T GF +F I
Sbjct: 398 ASFFMLFAMSNVGLPGTSGFVGEFMI 423
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 18/214 (8%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVTA 82
I +Y L +T L F I K +P HTWLPD+ +++ AA M+
Sbjct: 208 IAHFYPLKLTMTEQLWIFFAFLIAFAVKIPMWPFHTWLPDAHTEAPAGGSVVLAALMLKL 267
Query: 83 GIFMITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYM 140
G + R S P+ + L + + + I ++G++ + Q D+KR+IAYS+++ +G++
Sbjct: 268 GGYGFLRFSLPIVPDACRYLDVFMITLSLIAIVYIGIVALAQVDMKRLIAYSSIAHMGFV 327
Query: 141 TVG---------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRN 185
+G + + ++ +++HAF +FL+ G ++ + H + I++
Sbjct: 328 VLGSFMLFEIIKHSHNTLMAYMSLEGAMVQMISHAFSSGAMFLAVG-MLAHRFHTRLIKD 386
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GGL MP+ ++ +S VG P SGF +
Sbjct: 387 YGGLALRMPVLASFFMLFAMSNVGLPGTSGFVGE 420
>gi|347758114|ref|YP_004865676.1| proton-translocating NADH-quinone oxidoreductase subunit M family
protein [Micavibrio aeruginosavorus ARL-13]
gi|347590632|gb|AEP09674.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Micavibrio aeruginosavorus ARL-13]
Length = 512
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/373 (51%), Positives = 275/373 (73%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLI 275
Y +K W NI Y +G+DGLS++F+ L+AF+T I IL S I ++ EYM AFL+
Sbjct: 64 YQFVEKSTWFPGLNIGYHMGVDGLSMFFVVLSAFLTPICILASWTSITSRVKEYMVAFLV 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L +IG FCALD +LFY FFE LIP+F+IIG WGG R Y+A KFFLYTL+GS+LML+
Sbjct: 124 LETFMIGTFCALDAVLFYAFFEGVLIPMFLIIGIWGGKRRVYSAYKFFLYTLLGSVLMLV 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++Y+Y+ + + +I + + + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 184 ALLYMYFQAGTT-DIPTLMEHGFPRDVQFWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 242
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG LRFS+P+ P+A+ +F+ ++ LS+I+IIY SL+A+VQ D+K
Sbjct: 243 TAGSVILAGVLLKMGGYGFLRFSIPMLPEATEFFAPMVFGLSIIAIIYTSLVALVQDDMK 302
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VTLG+F +T IQG I QMISH ++S+A+F+ +G +Y+++ TR IS
Sbjct: 303 KLIAYSSVAHMGYVTLGLFTMTAQGIQGGIFQMISHGIVSAALFLCVGVVYDRLHTREIS 362
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++ +P ++V F+IF L + LPGTSGF+GEF+ +L A + + + VL +T LI
Sbjct: 363 RYGGVVKNMPKYAVVFMIFMLGSVGLPGTSGFVGEFLALLGAYRVDTLVAVLATTGLILG 422
Query: 576 AAYSLCLSKNIIF 588
A Y L L + +IF
Sbjct: 423 APYMLILYRRVIF 435
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ + + ++F
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSIPMLPEATEFFAPMVFG 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-GVSAYTVS--IFHLMTHAFFK 163
+ I + L+ ++Q+D+K++IAYS+++ +GY+T+GL ++A + IF +++H
Sbjct: 283 LSIIAIIYTSLVALVQDDMKKLIAYSSVAHMGYVTLGLFTMTAQGIQGGIFQMISHGIVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G ++ + H ++I GG+ K MP + +I +L VG P SGF +
Sbjct: 343 AALFLCVG-VVYDRLHTREISRYGGVVKNMPKYAVVFMIFMLGSVGLPGTSGFVGE 397
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 122/269 (45%), Gaps = 19/269 (7%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I K ++S A K+F+ +L S ML + +Y GT ++ ++
Sbjct: 148 LIPMFLIIGIWGGKRRVYS---AYKFFLYTLLGSVLMLVALLYMYFQAGTTDIPTLME-- 202
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFV 728
+ V L + K+ + P H W+PD + A +++L+ K+ +
Sbjct: 203 --HGFPRDVQFWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYG 260
Query: 729 IIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFS 788
+ R I L + ++ L+I ++I ++ A+ Q + K++IAYSS+AHMG +
Sbjct: 261 FL-RFSIPMLPEATEFFAPMVFGLSIIAIIYTSLVALVQDDMKKLIAYSSVAHMGYVTLG 319
Query: 789 IISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQ 848
+ ++ G+F +I++ F + ++ + T E+ + G+ +
Sbjct: 320 LFTMTA--------QGIQGGIFQMISHGIVSAALFLCVGVVYDRL--HTREISRYGGVVK 369
Query: 849 RNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
P A++ MIFM G P T GF +F
Sbjct: 370 NMPKYAVVFMIFMLGSVGLPGTSGFVGEF 398
>gi|404320284|ref|ZP_10968217.1| NADH:ubiquinone oxidoreductase subunit M [Ochrobactrum anthropi
CTS-325]
Length = 502
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/360 (55%), Positives = 274/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWISVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ + S Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELQKYSFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ LI TLS+I+IIY SL+A+VQ DIKKLIAYSS+AHM +
Sbjct: 255 LGGYGFLRFSLPMFPLASADFAPLIFTLSVIAIIYTSLVALVQEDIKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + IQGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGIQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + ++F
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRQVVF 434
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASADFAPLIFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ + Y+T+G+ G+ +IF +++H
Sbjct: 282 LSVIAIIYTSLVALVQEDIKKLIAYSSVAHMAYVTMGIFAANEQGIQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GT+ N+++L + + L +
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELQKYSFPAGMQTWLWLAFFA 218
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
SF K+ + P H W+PD + A +++L+ I+ +L ++ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFLRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPLIFTLSVIAIIYTSLVALVQEDIKKLIAYSSVAHMAYVTMGIFAANEQGIQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|452964812|gb|EME69845.1| NADH:ubiquinone oxidoreductase subunit M [Magnetospirillum sp.
SO-1]
Length = 504
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/373 (49%), Positives = 278/373 (74%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
+ + +W I Y +G+DG+S+WF+ L+ F+ I IL + ++K++ EYM AF+I
Sbjct: 64 FQLKETALWFPGTTIAYSMGVDGISVWFVLLSTFLCPICILAAFGSVEKRVKEYMVAFMI 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L ++IG FCALD +LFYIFFEA LIP+FIIIG WGG+ R YAA KFFLYTL+GS+LML+
Sbjct: 124 LETMMIGMFCALDLVLFYIFFEAVLIPMFIIIGVWGGARRVYAAFKFFLYTLLGSVLMLV 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+M+ +Y+ ++ + +I S S Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 184 AMLAMYFDAHTT-DIPSLMAHSFPFKMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAP 242
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG +RFS+P+ PDAS YF+ LI TLS++++IY SL+A+VQ D+K
Sbjct: 243 TGGSVILAGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYTLSIVAVIYTSLVALVQEDMK 302
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VT+GIF +T ++GA+ QM+SH ++S A+F+ +G +Y++M TR IS
Sbjct: 303 KLIAYSSVAHMGYVTIGIFAMTTQGVEGALFQMLSHGIVSGALFLCVGVIYDRMHTREIS 362
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG+ +P ++ F++F++A+ LPGT+GF+GEF++++ + N + +T L+
Sbjct: 363 RYGGLATRMPKYAAVFMLFTMASVGLPGTAGFVGEFLVLMGVFQVNTWVAFFAATGLVLG 422
Query: 576 AAYSLCLSKNIIF 588
AAY L L + ++F
Sbjct: 423 AAYMLYLYRRVVF 435
Score = 83.6 bits (205), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 98/179 (54%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ A ++ G + R S P+ ++ + +++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSVIL-AGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYT 282
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q D+K++IAYS+++ +GY+T+G+ GV ++F +++H
Sbjct: 283 LSIVAVIYTSLVALVQEDMKKLIAYSSVAHMGYVTIGIFAMTTQGVEG---ALFQMLSHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP ++ ++ VG P +GF +
Sbjct: 340 IVSGALFLCVG-VIYDRMHTREISRYGGLATRMPKYAAVFMLFTMASVGLPGTAGFVGE 397
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 22/259 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + +Y T ++ S+ ++ + L
Sbjct: 166 AAFKFFLYTLLGSVLMLVAMLAMYFDAHTTDIPSLMA----HSFPFKMQLWLWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + G S+I+ +L K+ + I R I L + +
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTGGSVILAGVLL---KMGAYGFI-RFSIPMLPDASVYFT 277
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ L+I ++I ++ A+ Q + K++IAYSS+AHMG + I ++ T +F
Sbjct: 278 PLIYTLSIVAVIYTSLVALVQEDMKKLIAYSSVAHMGYVTIGIFAMTTQGVEGALFQMLS 337
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
G+ + GA + + + + + T E+ + GL R P A + M+F + G
Sbjct: 338 HGI---------VSGALFLCVGVIYDRMH-TREISRYGGLATRMPKYAAVFMLFTMASVG 387
Query: 867 FPPTIGFYAKFFIFEKIFE 885
P T GF +F + +F+
Sbjct: 388 LPGTAGFVGEFLVLMGVFQ 406
>gi|121998532|ref|YP_001003319.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Halorhodospira halophila SL1]
gi|121589937|gb|ABM62517.1| NADH dehydrogenase subunit M [Halorhodospira halophila SL1]
Length = 505
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/381 (51%), Positives = 277/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K+ W+ F+I+Y LG+DG+S+ + LTAF TL++++ I + A+YM AFL++ GL
Sbjct: 64 EKRDWVPTFDIHYHLGVDGISMPLVVLTAFATLLVVIAGRSGITYRPAQYMGAFLVMEGL 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+F+EA L+P+F++IG WGG+NR YA IKFFLYT +GS+LMLI+ +Y
Sbjct: 124 MIGVFAALDAILFYVFWEAMLVPMFLLIGMWGGANRIYATIKFFLYTFLGSVLMLIAFLY 183
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
L + SF +L +H LSI QI +F+ AFA+K+P+WP+HTWLPDAH EAPT GS
Sbjct: 184 LRW-EAGSFGVLDFHGLSIGLEAQILIFLALLAAFAVKVPMWPVHTWLPDAHTEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI P+AS + L+I +SLI+I+YI L+AMVQ D+K+LIA
Sbjct: 243 VILAAITLKMGAYGFLRFALPIAPEASQELAWLVIAMSLIAIVYIGLVAMVQEDMKRLIA 302
Query: 460 YSSIAHMGFVTLGIFMLTK------------ISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGF TLG F++ + +++ G +Q+ISH IS+A+F+ +G LY+
Sbjct: 303 YSSIAHMGFATLGFFVIFQAGLGAEAGDGALMAMTGGYVQLISHGFISAALFLCVGVLYD 362
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR I+++GG+IN +P F F++F++AN LPGTSGF+GEF++IL + + +F +
Sbjct: 363 RMHTRNIADYGGVINRMPIFGALFVVFAMANAGLPGTSGFVGEFLVILGSYQASFWYAAI 422
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
LI AAYSL L K ++F
Sbjct: 423 AGLTLIVGAAYSLWLVKRVVF 443
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K +P+HTWLPD+ E PT S ++ A T+ + P+ ++ L+ +++ +
Sbjct: 220 KVPMWPVHTWLPDAHTEAPTGGSVILAAITLKMGAYGFLRFALPIAPEASQELAWLVIAM 279
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV--------GLGVS-------AYTVS 152
I ++GL+ ++Q D+KR+IAYS+++ +G+ T+ GLG A T
Sbjct: 280 SLIAIVYIGLVAMVQEDMKRLIAYSSIAHMGFATLGFFVIFQAGLGAEAGDGALMAMTGG 339
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
L++H F A LFL G ++ + H ++I + GG+ MPI ++ ++ G P
Sbjct: 340 YVQLISHGFISAALFLCVG-VLYDRMHTRNIADYGGVINRMPIFGALFVVFAMANAGLPG 398
Query: 213 FSGFYSK 219
SGF +
Sbjct: 399 TSGFVGE 405
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 41/294 (13%)
Query: 605 YLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLEL 662
Y+ E M + + +LI N I+++ IK+F+ L S ML I+ LY L
Sbjct: 137 YVFWEAMLVPMFLLIGMWGGANRIYAT---IKFFLYTFLGSVLML--IAFLY-----LRW 186
Query: 663 QS-IFNVIKLNNINCSVLA--LSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIIT 715
++ F V+ + ++ + A L L ++ + K+ + P H W+PD + G S+I
Sbjct: 187 EAGSFGVLDFHGLSIGLEAQILIFLALLAAFAVKVPMWPVHTWLPDAHTEAPTGGSVI-- 244
Query: 716 LLLSTTPKLSLFVII-YRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
L + T K+ + + + L I + W +++ +++ +++ + A+ Q + KR+I
Sbjct: 245 -LAAITLKMGAYGFLRFALPIAPEASQELAW--LVIAMSLIAIVYIGLVAMVQEDMKRLI 301
Query: 775 AYSSIAHMG---LMLFSI----ISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
AYSSIAHMG L F I + + L+ + G +I++ F F +
Sbjct: 302 AYSSIAHMGFATLGFFVIFQAGLGAEAGDGALM---AMTGGYVQLISHGFISAALFLCVG 358
Query: 828 LL--KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+L + +T N D + G+ R P + ++F + AG P T GF +F +
Sbjct: 359 VLYDRMHTRNIAD----YGGVINRMPIFGALFVVFAMANAGLPGTSGFVGEFLV 408
>gi|386719334|ref|YP_006185660.1| NADH-ubiquinone oxidoreductase subunit M [Stenotrophomonas
maltophilia D457]
gi|384078896|emb|CCH13490.1| NADH-ubiquinone oxidoreductase chain M [Stenotrophomonas
maltophilia D457]
Length = 502
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 278/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ WI + I Y LG+DG+++ I LT ++++ ++ + I K++ +Y++AFLIL G+
Sbjct: 63 ETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+++IY
Sbjct: 123 TVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLVALIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-MKGGSFQLADLYALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F+ ++ +QGA++QMISH +S AMF +G LY+
Sbjct: 302 YSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M +R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+ILSA + N I +
Sbjct: 362 RMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILSAFQRNPWIALG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L L K I F
Sbjct: 422 AATTLIIGAAYTLWLYKRIFF 442
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 104/210 (49%), Gaps = 18/210 (8%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI- 84
Y PL+ F I K FP+HTWLPD+ +E PT S ++ A + G
Sbjct: 196 YALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYG 255
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
F+ + + + S +++ + I ++GL+ ++Q+D+K++IAYS+++ +G++T+G
Sbjct: 256 FLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGT 315
Query: 145 GVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
++ + V ++ +++H F +F G ++ + H++ I + GG+
Sbjct: 316 FIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVG-VLYDRMHSRRIADYGGV 374
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 375 VNVMPWFATFAMLFFMANAGLPGTSGFVGE 404
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 134/282 (47%), Gaps = 19/282 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML + LY G+ +L ++ + L+ + + + L +
Sbjct: 161 AALKFFLYTFLGSVLMLVALIYLYMKGGSFQLADLY-ALPLSAKEQTWIFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASQEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM----LFSIISIKTSHNNLIIF 802
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + ++ ++ + N
Sbjct: 273 WLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAAR 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F + +L + ++ + + G+ PW A M+F
Sbjct: 333 LGLQGAMVQMISHGFVSGAMFSCVGVLYDRMHSR--RIADYGGVVNVMPWFATFAMLFFM 390
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ W+ L +IGA
Sbjct: 391 ANAGLPGTSGFVGEFMVILSAFQRNP-WIALGAATTLIIGAA 431
>gi|190575266|ref|YP_001973111.1| NADH dehydrogenase subunit M [Stenotrophomonas maltophilia K279a]
gi|424669577|ref|ZP_18106602.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Stenotrophomonas maltophilia Ab55555]
gi|190013188|emb|CAQ46821.1| putative NADH dehydrogenase I chain M [Stenotrophomonas maltophilia
K279a]
gi|401071648|gb|EJP80159.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Stenotrophomonas maltophilia Ab55555]
gi|456736832|gb|EMF61558.1| NADH-ubiquinone oxidoreductase chain M [Stenotrophomonas
maltophilia EPM1]
Length = 502
Score = 405 bits (1040), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 278/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ WI + I Y LG+DG+++ I LT ++++ ++ + I K++ +Y++AFLIL G+
Sbjct: 63 ETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+++IY
Sbjct: 123 TVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLVALIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-MKGGSFQLADLYALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F+ ++ +QGA++QMISH +S AMF +G LY+
Sbjct: 302 YSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M +R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+ILSA + N I +
Sbjct: 362 RMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILSAFQRNPWIALG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L L K I F
Sbjct: 422 AATTLIIGAAYTLWLYKRIFF 442
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 104/210 (49%), Gaps = 18/210 (8%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI- 84
Y PL+ F I K FP+HTWLPD+ +E PT S ++ A + G
Sbjct: 196 YALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYG 255
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
F+ + + + S +++ + I ++GL+ ++Q+D+K++IAYS+++ +G++T+G
Sbjct: 256 FLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGT 315
Query: 145 GVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
++ + V ++ +++H F +F G ++ + H++ I + GG+
Sbjct: 316 FIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVG-VLYDRMHSRRIADYGGV 374
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 375 VNVMPWFATFAMLFFMANAGLPGTSGFVGE 404
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 134/282 (47%), Gaps = 19/282 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML + LY G+ +L ++ + L+ + + + L +
Sbjct: 161 AALKFFLYTFLGSVLMLVALIYLYMKGGSFQLADLY-ALPLSAKEQTWIFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASQEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM----LFSIISIKTSHNNLIIF 802
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + ++ ++ + N
Sbjct: 273 WLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAAR 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F + +L + ++ + + G+ PW A M+F
Sbjct: 333 LGLQGAMVQMISHGFVSGAMFSCVGVLYDRMHSR--RIADYGGVVNVMPWFATFAMLFFM 390
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ W+ L +IGA
Sbjct: 391 ANAGLPGTSGFVGEFMVILSAFQRNP-WIALGAATTLIIGAA 431
>gi|153009739|ref|YP_001370954.1| NADH dehydrogenase subunit M [Ochrobactrum anthropi ATCC 49188]
gi|151561627|gb|ABS15125.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Ochrobactrum anthropi ATCC 49188]
Length = 502
Score = 405 bits (1040), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/360 (54%), Positives = 274/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWISVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ + S Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELQKYSFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ LI TLS+I+IIY SL+A+VQ DIKKLIAYSS+AHM +
Sbjct: 255 LGGYGFLRFSLPMFPLASADFAPLIFTLSVIAIIYTSLVALVQEDIKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + IQGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGIQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGF+GEF+ + + N + + +T +I SAAY+L L + ++F
Sbjct: 375 VAFLIFTMANVGLPGTSGFLGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRQVVF 434
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASADFAPLIFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ + Y+T+G+ G+ +IF +++H
Sbjct: 282 LSVIAIIYTSLVALVQEDIKKLIAYSSVAHMAYVTMGIFAANEQGIQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFLGE 396
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GT+ N+++L + + L +
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELQKYSFPAGMQTWLWLAFFA 218
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
SF K+ + P H W+PD + A +++L+ I+ +L ++ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFLRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPLIFTLSVIAIIYTSLVALVQEDIKKLIAYSSVAHMAYVTMGIFAANEQGIQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFLGEFLTLFGVFRVNT-WVAL 412
>gi|240850595|ref|YP_002971995.1| NADH dehydrogenase I subunit M [Bartonella grahamii as4aup]
gi|240267718|gb|ACS51306.1| NADH dehydrogenase I subunit M [Bartonella grahamii as4aup]
Length = 489
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 280/369 (75%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+S+ F+ L+AF+ IL SL+ +K++L YM AFL+L
Sbjct: 68 EKSSWLGG-GISYHMGVDGISILFVVLSAFLLPFCILASLENVKERLKAYMIAFLLLEVA 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IIG FCALD MLFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYTL+GS+LML++++
Sbjct: 127 IIGVFCALDAMLFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLMLVALMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + +I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MYW-EAGTLDIPTLLNYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YG LRFSLP+FP AS F+ LI TLSLI+IIY SL+A+VQ DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGFLRFSLPMFPIASADFAPLIFTLSLIAIIYTSLVALVQNDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMG+VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG
Sbjct: 306 YSSIAHMGYVTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N + VL +T +I SAAY+
Sbjct: 366 LVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVLATTGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LYLYRRVVF 434
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLIFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFSANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 121/271 (44%), Gaps = 30/271 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ N + L
Sbjct: 165 ASIKFFLYTLLGSVLMLVALMAMYWEAGTLDIPTLLN----YQFPAHMQIWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSSIAHMG + I S I+
Sbjct: 273 ADFAPLIFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFSANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P + GF +F +F+ K+ ++L
Sbjct: 383 ANVGLPGSSGFLGEFLTLIGVFQVNKLVVVL 413
>gi|407776910|ref|ZP_11124181.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor pacificus
pht-3B]
gi|407301075|gb|EKF20196.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor pacificus
pht-3B]
Length = 504
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/406 (50%), Positives = 294/406 (72%), Gaps = 6/406 (1%)
Query: 215 GFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAF 273
GF +K++ W+D I Y +G+DG+S+ F+ LT F+ IL S + I K++ EYM AF
Sbjct: 63 GFQMVEKRE-WLDS-GISYHMGVDGISMLFVILTTFLMPFCILASWEAIDKRVKEYMIAF 120
Query: 274 LILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLM 333
LIL L+IG FCALD +LFY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL+GS+LM
Sbjct: 121 LILETLMIGVFCALDVVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLM 180
Query: 334 LISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
L++M+ +++ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHVE
Sbjct: 181 LLAMMAMFWQAGTT-DIPTLLTHVFPTGMQYWLWVAFFASFAVKMPMWPVHTWLPDAHVE 239
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LK+G YG LRFSLP+FP AS + L+ TLS+++IIY SL+A++Q D
Sbjct: 240 APTAGSVILAGILLKMGGYGFLRFSLPMFPVASIDLAPLVFTLSVVAIIYTSLVALMQED 299
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IKKLIAYSS+AHMGFVT+GIF L + +QGAI QMISH L+S A+F+ +G +Y++M TR
Sbjct: 300 IKKLIAYSSVAHMGFVTMGIFALNEQGVQGAIFQMISHGLVSGALFLCVGVIYDRMHTRE 359
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG++N +P ++ F+IF++AN LPGTSGF+GEF+ +L+ + N + + +T +I
Sbjct: 360 IAAYGGLVNNMPKYATVFLIFTMANVGLPGTSGFVGEFLTLLAVFEVNTWVALFAATGVI 419
Query: 574 FSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLI 619
SAAY+L L + ++F G + S +LL + +L+ L VL+
Sbjct: 420 LSAAYALWLYRRVVF--GSLTKESLKSLLDLSTREKLILYPLVVLV 463
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ L+ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPVASIDLAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q DIK++IAYS+++ +G++T+G L +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFALNEQGVQGAIFQMISHGLVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP LI ++ VG P SGF +
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAYGGLVNNMPKYATVFLIFTMANVGLPGTSGFVGE 396
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 31/271 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + ++ GT ++ ++ + + + +
Sbjct: 165 ASFKFFLYTLLGSVLMLLAMMAMFWQAGTTDIPTLLTHVFPTGMQYWLW----VAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFLRFSLPMFPVAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
I+ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 273 IDLAPLVFTLSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFALNEQGVQGAIF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL + GA + + + + + T E+ + GL P A + +IF
Sbjct: 333 QMISHGL---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNNMPKYATVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +FE W+ L
Sbjct: 383 ANVGLPGTSGFVGEFLTLLAVFEVNT-WVAL 412
>gi|337268175|ref|YP_004612230.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Mesorhizobium opportunistum WSM2075]
gi|336028485|gb|AEH88136.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Mesorhizobium opportunistum WSM2075]
Length = 501
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 277/369 (75%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+D I Y +G+DG+S+ F+ LT F+ + IL S + I+K++ YM AFL+L L
Sbjct: 68 EKAAWLDS-GISYHMGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMVAFLLLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL GS+LML++++
Sbjct: 127 MIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
++Y S + +I + S QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MFYQSGTT-DIPTLLTHSFPANMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS F+ L+ TLS+++IIY SL+A++Q D+KKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF + + +QGAI QM+SH L+S A+F+ +G +Y++M TR I +GG
Sbjct: 306 YSSVAHMGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIDAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGF+GEF+ +L + N + +T +I SAAY+
Sbjct: 366 LVNNMPKYATVFMVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP ++ ++ VG P SGF +
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREIDAYGGLVNNMPKYATVFMVFTMANVGLPGTSGFVGE 396
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML I ++ +GT ++ ++ ++ ++ L
Sbjct: 165 ASFKFFLYTLAGSVLMLLAIMAMFYQSGTTDIPTLLT----HSFPANMQIWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L + PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 281 T-------LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQGAIFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + GA + + + + + T E+D + GL P A + M+F +
Sbjct: 334 MLSHGL---------VSGALFLCVGVIYDRMH-TREIDAYGGLVNNMPKYATVFMVFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F +F
Sbjct: 384 NVGLPGTSGFVGEFLTMLGVFR 405
>gi|288942122|ref|YP_003444362.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Allochromatium vinosum DSM 180]
gi|288897494|gb|ADC63330.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Allochromatium vinosum DSM 180]
Length = 524
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/381 (53%), Positives = 286/381 (75%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI FN+ YFLG+DGLS+ I LT FI++ +I+ D I+ K ++YM+AFLI+ G+
Sbjct: 65 ERAPWIPTFNVEYFLGVDGLSMPLIVLTTFISIFVIIAGWDVIRYKPSQYMAAFLIMEGI 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+F+EA LIP+FIIIG WGG NR YA IKFF+YT +GS+ ML+++IY
Sbjct: 125 MVGVFSALDAVLFYVFWEAMLIPMFIIIGVWGGPNRVYATIKFFIYTFLGSVFMLVALIY 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ S SF+IL +H L + Q +FI FF+AFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 185 MYFQSG-SFSILDFHALELGMTAQTLIFIAFFLAFAVKVPMFPVHTWLPDAHVEAPTGGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFSLPI PDAS + +II LSLI+I+YI +A+VQ D+KKLIA
Sbjct: 244 VILAAIMLKIGGYGFLRFSLPITPDASADLAWVIIALSLIAIVYIGFVALVQQDMKKLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKIS------------IQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F++ ++ I+G ++QMISH IS A+F+ +G LY+
Sbjct: 304 YSSIAHMGFVTLGFFIVFSLALNPSVTGGAVMGIEGGMVQMISHGFISGALFLCVGVLYD 363
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ +R I+++GG+IN +P F F + F++AN LPGTSGF+GEFM+IL+ K +F +L
Sbjct: 364 RVHSREIADYGGVINTMPWFGAFMVYFAMANAGLPGTSGFVGEFMVILATFKASFWWALL 423
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI +AA++L + K ++F
Sbjct: 424 AATTLILAAAFTLWMVKRVVF 444
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L +TA F+ + K FP+HTWLPD+ +E PT S +I AA M+ G + R
Sbjct: 202 LGMTAQTLIFIAFFLAFAVKVPMFPVHTWLPDAHVEAPTGGS-VILAAIMLKIGGYGFLR 260
Query: 90 MS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL--- 144
S P+ ++ L+ +I+ + I ++G + ++Q D+K++IAYS+++ +G++T+G
Sbjct: 261 FSLPITPDASADLAWVIIALSLIAIVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGFFIV 320
Query: 145 ------------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
V + +++H F LFL G ++ + H+++I + GG+
Sbjct: 321 FSLALNPSVTGGAVMGIEGGMVQMISHGFISGALFLCVG-VLYDRVHSREIADYGGVINT 379
Query: 193 MP 194
MP
Sbjct: 380 MP 381
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 124/270 (45%), Gaps = 22/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+FI L S FML + +Y +G+ F+++ + + + A +L+ I L
Sbjct: 163 ATIKFFIYTFLGSVFMLVALIYMYFQSGS------FSILDFHALELGMTAQTLIFIAFFL 216
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G S+I+ ++ + + L I +
Sbjct: 217 AFAVKVPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--LRFSLPITPDASADLA 274
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
W +++ L++ +++ A+ Q + K++IAYSSIAHMG + + + N +
Sbjct: 275 W--VIIALSLIAIVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGFFIVFSLALNPSVTGG 332
Query: 805 C----DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ G+ +I++ F F + +L + ++ E+ + G+ PW M+ F
Sbjct: 333 AVMGIEGGMVQMISHGFISGALFLCVGVLYDRVHSR--EIADYGGVINTMPWFGAFMVYF 390
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
+ AG P T GF +F + F+ W
Sbjct: 391 AMANAGLPGTSGFVGEFMVILATFKASFWW 420
>gi|254524823|ref|ZP_05136878.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Stenotrophomonas sp.
SKA14]
gi|344208248|ref|YP_004793389.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Stenotrophomonas maltophilia JV3]
gi|219722414|gb|EED40939.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Stenotrophomonas sp.
SKA14]
gi|343779610|gb|AEM52163.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Stenotrophomonas maltophilia JV3]
Length = 502
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 278/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ WI + I Y LG+DG+++ I LT ++++ ++ + I K++ +Y++AFLIL G+
Sbjct: 63 ETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+++IY
Sbjct: 123 TVGIFSATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLVALIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-LKGGSFQLADLYALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F+ ++ +QGA++QMISH +S AMF +G LY+
Sbjct: 302 YSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M +R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+ILSA + N I +
Sbjct: 362 RMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILSAFQRNPWIALG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L L K I F
Sbjct: 422 AATTLIIGAAYTLWLYKRIFF 442
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 104/210 (49%), Gaps = 18/210 (8%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI- 84
Y PL+ F I K FP+HTWLPD+ +E PT S ++ A + G
Sbjct: 196 YALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYG 255
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
F+ + + + S +++ + I ++GL+ ++Q+D+K++IAYS+++ +G++T+G
Sbjct: 256 FLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGT 315
Query: 145 GVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
++ + V ++ +++H F +F G ++ + H++ I + GG+
Sbjct: 316 FIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVG-VLYDRMHSRRIADYGGV 374
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 375 VNVMPWFATFAMLFFMANAGLPGTSGFVGE 404
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 134/282 (47%), Gaps = 19/282 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML + LY G+ +L ++ + L+ + + + L +
Sbjct: 161 AALKFFLYTFLGSVLMLVALIYLYLKGGSFQLADLY-ALPLSAKEQTWIFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASQEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM----LFSIISIKTSHNNLIIF 802
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + ++ ++ + N
Sbjct: 273 WLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAAR 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F + +L + ++ + + G+ PW A M+F
Sbjct: 333 LGLQGAMVQMISHGFVSGAMFSCVGVLYDRMHSR--RIADYGGVVNVMPWFATFAMLFFM 390
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ W+ L +IGA
Sbjct: 391 ANAGLPGTSGFVGEFMVILSAFQRNP-WIALGAATTLIIGAA 431
>gi|408824980|ref|ZP_11209870.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas geniculata
N1]
Length = 502
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 278/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ WI + I Y LG+DG+++ I LT ++++ ++ + I K++ +Y++AFLIL G+
Sbjct: 63 ETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+G F A D MLFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+++IY
Sbjct: 123 TVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLLALIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-MKGGSFQLADLYALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS ++ L+I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F+ ++ +QGA++QMISH +S AMF +G LY+
Sbjct: 302 YSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M +R I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+ILSA + N I +
Sbjct: 362 RMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILSAFQRNPWIALG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L L K I F
Sbjct: 422 AATTLIIGAAYTLWLYKRIFF 442
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 104/210 (49%), Gaps = 18/210 (8%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI- 84
Y PL+ F I K FP+HTWLPD+ +E PT S ++ A + G
Sbjct: 196 YALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYG 255
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
F+ + + + S +++ + I ++GL+ ++Q+D+K++IAYS+++ +G++T+G
Sbjct: 256 FLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGT 315
Query: 145 GVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
++ + V ++ +++H F +F G ++ + H++ I + GG+
Sbjct: 316 FIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSCVG-VLYDRMHSRRIADYGGV 374
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 375 VNVMPWFATFAMLFFMANAGLPGTSGFVGE 404
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 134/282 (47%), Gaps = 19/282 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML + LY G+ +L ++ + L+ + + + L +
Sbjct: 161 AALKFFLYTFLGSVLMLLALIYLYMKGGSFQLADLY-ALPLSAKEQTWIFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASQEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM----LFSIISIKTSHNNLIIF 802
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + ++ ++ + N
Sbjct: 273 WLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAAR 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ +I++ F F + +L + ++ + + G+ PW A M+F
Sbjct: 333 LGLQGAMVQMISHGFVSGAMFSCVGVLYDRMHSR--RIADYGGVVNVMPWFATFAMLFFM 390
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ W+ L +IGA
Sbjct: 391 ANAGLPGTSGFVGEFMVILSAFQRNP-WIALGAATTLIIGAA 431
>gi|83311874|ref|YP_422138.1| NADH dehydrogenase subunit M [Magnetospirillum magneticum AMB-1]
gi|82946715|dbj|BAE51579.1| NADH:ubiquinone oxidoreductase subunit 4 [Magnetospirillum
magneticum AMB-1]
Length = 504
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/373 (49%), Positives = 278/373 (74%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
+ + +W I Y +G+DG+S+WF+ L+ F+T I IL + ++K++ EYM AF+I
Sbjct: 64 FQLKETALWFPGTTIAYSMGVDGISMWFVLLSTFLTPICILAAFGSVEKRVKEYMVAFMI 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L ++IG FCALD +LFYIFFEA LIP+FIIIG WGG R YAA KFFLYTL+GS+LMLI
Sbjct: 124 LETMMIGMFCALDLVLFYIFFEAVLIPMFIIIGVWGGQRRVYAAFKFFLYTLLGSVLMLI 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+M+ +Y+ ++ + +I S S Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 184 AMLAMYFDAHTT-DIPSLMAHSFPFKMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAP 242
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG +RFS+P+ PDAS YF+ LI TLS++++IY SL+A+VQ D+K
Sbjct: 243 TGGSVILAGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYTLSIVAVIYTSLVALVQDDMK 302
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VT+GIF +T ++GA+ QM+SH +++SA+F+ +G +Y++M TR I+
Sbjct: 303 KLIAYSSVAHMGYVTIGIFSMTTQGVEGAVFQMLSHGIVASALFLCVGVIYDRMHTREIA 362
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG+ +P ++V F++F++A+ LPGT+GF+GEF++++ + N + +T L+
Sbjct: 363 RYGGLATRMPIYAVVFMLFTMASVGLPGTAGFVGEFLVLMGVFQVNTWVAFFAATGLVLG 422
Query: 576 AAYSLCLSKNIIF 588
Y L L + ++F
Sbjct: 423 CTYMLYLYRRVVF 435
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ A ++ G + R S P+ ++ + +++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSVIL-AGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYT 282
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q+D+K++IAYS+++ +GY+T+G+ GV ++F +++H
Sbjct: 283 LSIVAVIYTSLVALVQDDMKKLIAYSSVAHMGYVTIGIFSMTTQGVEG---AVFQMLSHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ LFL G +I + H ++I GGL MPI + ++ ++ VG P +GF +
Sbjct: 340 IVASALFLCVG-VIYDRMHTREIARYGGLATRMPIYAVVFMLFTMASVGLPGTAGFVGE 397
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 22/259 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + +Y T ++ S+ ++ + L
Sbjct: 166 AAFKFFLYTLLGSVLMLIAMLAMYFDAHTTDIPSLMA----HSFPFKMQLWLWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + G S+I+ +L K+ + I R I L + +
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTGGSVILAGVLL---KMGAYGFI-RFSIPMLPDASVYFT 277
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ L+I ++I ++ A+ Q + K++IAYSS+AHMG + I S+ T +F
Sbjct: 278 PLIYTLSIVAVIYTSLVALVQDDMKKLIAYSSVAHMGYVTIGIFSMTTQGVEGAVFQMLS 337
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
G+ + + +F +G +I + + T E+ + GL R P A++ M+F + G
Sbjct: 338 HGI--VASALFLCVG----VIYDRMH----TREIARYGGLATRMPIYAVVFMLFTMASVG 387
Query: 867 FPPTIGFYAKFFIFEKIFE 885
P T GF +F + +F+
Sbjct: 388 LPGTAGFVGEFLVLMGVFQ 406
>gi|381167332|ref|ZP_09876540.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Phaeospirillum molischianum DSM 120]
gi|380683640|emb|CCG41352.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Phaeospirillum molischianum DSM 120]
Length = 504
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/373 (50%), Positives = 276/373 (73%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
+ + W I Y LGIDG+SLWF+ L+ F+T + IL + + +++ EYM FL+
Sbjct: 64 FQLKETAAWFPGTTIAYSLGIDGVSLWFVLLSTFLTPLCILSTYRAVHERVKEYMVCFLV 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L +++G FCALD +LFY+FFE LIP+FIIIG WGG R YAA KFFLYTL+GS+LML+
Sbjct: 124 LETMMVGMFCALDLVLFYLFFEGVLIPMFIIIGVWGGQRRVYAAFKFFLYTLLGSVLMLV 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+M+ +Y+ + + +I S S Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 184 AMLVMYFEAQTT-DIPSLMAHSFPIEMQKWLWMAFFASFAVKVPMWPVHTWLPDAHVEAP 242
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG LRFSLP+ PDAS +F+ LI LS++++IY SL+A+VQ DIK
Sbjct: 243 TAGSVILAGVLLKMGAYGFLRFSLPMLPDASVFFTPLIQVLSVVAVIYTSLVALVQEDIK 302
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VTLG+F +T ++GA+IQM+SH ++++A+F+ +G +Y+++ TR I+
Sbjct: 303 KLIAYSSVAHMGYVTLGLFAMTPQGVEGALIQMLSHGVVAAALFLGVGVIYDRLHTREIA 362
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
FGG+ +P ++ FF++F+LA+ LPGTSGF+GEF++++ + + + VLT+T +I
Sbjct: 363 RFGGLATRMPLYAAFFMLFTLASIGLPGTSGFVGEFLVLIGVFQVDRLVAVLTATGVILG 422
Query: 576 AAYSLCLSKNIIF 588
AAY L L + + F
Sbjct: 423 AAYMLYLYRRVFF 435
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ ++ + +I
Sbjct: 224 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGAYGFLRFSLPMLPDASVFFTPLIQV 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ + + L+ ++Q DIK++IAYS+++ +GY+T+GL GV ++ +++H
Sbjct: 283 LSVVAVIYTSLVALVQEDIKKLIAYSSVAHMGYVTLGLFAMTPQGVEG---ALIQMLSHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP+ ++ L+ +G P SGF +
Sbjct: 340 VVAAALFLGVG-VIYDRLHTREIARFGGLATRMPLYAAFFMLFTLASIGLPGTSGFVGE 397
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 117/260 (45%), Gaps = 16/260 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + ++Y T ++ S+ ++ + +
Sbjct: 166 AAFKFFLYTLLGSVLMLVAMLVMYFEAQTTDIPSLMA----HSFPIEMQKWLWMAFFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ K+ + + R + L + + ++
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFL-RFSLPMLPDASVFFTPLI 280
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
+L++ ++I ++ A+ Q + K++IAYSS+AHMG + + ++ + G+
Sbjct: 281 QVLSVVAVIYTSLVALVQEDIKKLIAYSSVAHMGYVTLGLFAMTPQGVEGALIQMLSHGV 340
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
++ GV ++ T E+ F GL R P A M+F + G P
Sbjct: 341 VAAALFL-------GVGVIYDR---LHTREIARFGGLATRMPLYAAFFMLFTLASIGLPG 390
Query: 870 TIGFYAKFFIFEKIFETQKI 889
T GF +F + +F+ ++
Sbjct: 391 TSGFVGEFLVLIGVFQVDRL 410
>gi|88812964|ref|ZP_01128207.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrococcus mobilis Nb-231]
gi|88789742|gb|EAR20866.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrococcus mobilis Nb-231]
Length = 501
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/384 (51%), Positives = 282/384 (73%), Gaps = 17/384 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI F +YY LG+DG+S+ I LT F T+++I+ + I+ K +Y++AFLI+ GL
Sbjct: 61 ERLAWIPAFEVYYHLGVDGISMPLILLTTFATVLVIIAGWEVIQYKQTQYLAAFLIMEGL 120
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+F+EA L+P+F+IIG WGG NR YA IKFFLYT MGS+LML+++IY
Sbjct: 121 MVGVFSALDAILFYVFWEAMLVPMFLIIGIWGGPNRIYATIKFFLYTFMGSVLMLVALIY 180
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
L Y SF IL +H ++ +Q+ +F+ F +AFA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 181 LRY-QTDSFGILDFHGTALALSQQVLIFLAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGS 239
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFSLPI P AS + L+I LSLI+++YI L+A+VQ D+KKLIA
Sbjct: 240 VILAAIMLKIGAYGFLRFSLPITPAASMELAWLLIALSLIAVVYIGLVAIVQEDMKKLIA 299
Query: 460 YSSIAHMGFVTLGIFMLTKI---------------SIQGAIIQMISHALISSAMFISIGF 504
YSS+AHMGFVTLG F + I +++G ++QMISH +S A+F+ +G
Sbjct: 300 YSSVAHMGFVTLGFFAIFDIFAHTGGVEGSGGAVMALEGGVVQMISHGFVSGALFLCVGV 359
Query: 505 LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCI 564
LY+++ +RLI ++GG+ N +P F+ FF++F++AN LPGTSGF+GEFM+IL++ + NF
Sbjct: 360 LYDRVHSRLIKDYGGVANRMPIFAAFFVLFAMANVGLPGTSGFVGEFMVILASFQANFWY 419
Query: 565 GVLTSTALIFSAAYSLCLSKNIIF 588
L + LI AAY+L L K +++
Sbjct: 420 AALAALTLILGAAYTLWLIKRVVY 443
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 23/214 (10%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+ LA++ + FL + K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 194 HGTALALSQQVLIFLAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGAY 252
Query: 86 MITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+ ++ L+ +L + I ++GL+ I+Q D+K++IAYS+++ +G++T+G
Sbjct: 253 GFLRFSLPITPAASMELAWLLIALSLIAVVYIGLVAIVQEDMKKLIAYSSVAHMGFVTLG 312
Query: 144 L------------------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRN 185
V A + +++H F LFL G ++ + H++ I++
Sbjct: 313 FFAIFDIFAHTGGVEGSGGAVMALEGGVVQMISHGFVSGALFLCVG-VLYDRVHSRLIKD 371
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GG+ MPI ++ ++ VG P SGF +
Sbjct: 372 YGGVANRMPIFAAFFVLFAMANVGLPGTSGFVGE 405
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 36/294 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N I+ A IK+F+ + S ML ++++Y L Q+ +
Sbjct: 141 LVPMFLIIGIWGGPNRIY---ATIKFFLYTFMGSVLML--VALIY-----LRYQT--DSF 188
Query: 670 KLNNINCSVLALS-----LLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLST 720
+ + + + LALS L +V + K+ + P H W+PD + G S+I+ ++
Sbjct: 189 GILDFHGTALALSQQVLIFLAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAIMLK 248
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
+ + L I + + W +L+ L++ +++ + AI Q + K++IAYSS+A
Sbjct: 249 IGAYGF--LRFSLPITPAASMELAW--LLIALSLIAVVYIGLVAIVQEDMKKLIAYSSVA 304
Query: 781 HMG---LMLFSIISIKTSHNNLI-----IFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
HMG L F+I I +H + + + G+ +I++ F F + +L +
Sbjct: 305 HMGFVTLGFFAIFDI-FAHTGGVEGSGGAVMALEGGVVQMISHGFVSGALFLCVGVLYDR 363
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET 886
++ + + G+ R P A ++F + G P T GF +F + F+
Sbjct: 364 VHSRL--IKDYGGVANRMPIFAAFFVLFAMANVGLPGTSGFVGEFMVILASFQA 415
>gi|161618778|ref|YP_001592665.1| NADH dehydrogenase subunit M [Brucella canis ATCC 23365]
gi|376274441|ref|YP_005114880.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Brucella canis HSK A52141]
gi|161335589|gb|ABX61894.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
canis ATCC 23365]
gi|363403008|gb|AEW13303.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
canis HSK A52141]
Length = 502
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y + +DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMSVDGISVLFVVLSAFLIPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N C+ + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTCVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.7 bits (221), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 34/267 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ G P T GF +F +F
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVN 407
>gi|91789104|ref|YP_550056.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Polaromonas sp. JS666]
gi|91698329|gb|ABE45158.1| NADH dehydrogenase subunit M [Polaromonas sp. JS666]
Length = 491
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/438 (50%), Positives = 325/438 (74%), Gaps = 18/438 (4%)
Query: 156 LMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSG 215
L++ A + ++F G++++ + ++ R++ ++ I I +++ L V P + G
Sbjct: 3 LLSLAIWTPIIF---GAVLLALGRDEQARSV----RW--IALIGAVVSFL--VTLPLYDG 51
Query: 216 FYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAE 268
F +K WI FN+ Y +G+DG+SLWF+ LTAFI +++I+ S + I ++++
Sbjct: 52 FQLGTSAMQFVEKGSWIQRFNVSYHVGVDGISLWFVLLTAFINVVVIIASWEAITTRVSQ 111
Query: 269 YMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLM 328
YM+AF++LSGL+IG F ALDG+LFY+FFEATLIP+++IIG WGG N+ YAA KFFLYTL+
Sbjct: 112 YMAAFMMLSGLMIGVFSALDGILFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLL 171
Query: 329 GSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLP 388
GSLL+L+++IYLY S SF+IL+WH+L + Q LF FF AFA+K+P+WP+HTWLP
Sbjct: 172 GSLLLLVALIYLYNKSGGSFDILTWHKLPLGSAVQTVLFFAFFAAFAVKVPMWPVHTWLP 231
Query: 389 DAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
D HVEAPT GS +LAAIMLKLG YG LRFS+PI PDAS ++ ++I LS+I++IY+ L+A
Sbjct: 232 DVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASREWAWVMIALSVIAVIYVGLVA 291
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQ 508
+VQ D+KKL+AYSS+AHMGFVTLG F+ I + G I+QMI+H +S AMF+ IG LY++
Sbjct: 292 LVQQDMKKLVAYSSVAHMGFVTLGFFIFNDIGVSGGIVQMIAHGFVSGAMFLCIGVLYDR 351
Query: 509 MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLT 568
+ +R I+++GG++N +P F+ F ++F++ANC LPGT+GF+GE+M+IL AVK NF +G
Sbjct: 352 VHSREIASYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMVILGAVKSNFWLGAAA 411
Query: 569 STALIFSAAYSLCLSKNI 586
+TALIF AAY+L + K +
Sbjct: 412 ATALIFGAAYTLWMFKRV 429
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W+ PL F K +P+HTWLPD +E PT SA++ AA M+ G
Sbjct: 196 WHKLPLGSAVQTVLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVL-AAIMLKLGA 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ + S +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+
Sbjct: 255 YGFLRFSMPIAPDASREWAWVMIALSVIAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTL 314
Query: 143 G------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G +GVS I ++ H F +FL G ++ + H+++I + GG+ MP
Sbjct: 315 GFFIFNDIGVSG---GIVQMIAHGFVSGAMFLCIG-VLYDRVHSREIASYGGVVNTMPKF 370
Query: 197 CITSLIGLLSLVGAPFFSGFYSK 219
+L+ ++ G P +GF +
Sbjct: 371 AAFALLFAMANCGLPGTAGFVGE 393
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 693 KLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
K+ + P H W+PDV+ G++++ ++L KL + + R + W
Sbjct: 220 KVPMWPVHTWLPDVHVEAPTGGSAVLAAIML----KLGAYGFL-RFSMPIAPDASREWAW 274
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--C 805
+++ L++ ++I + A+ Q + K+++AYSS+AHMG + IFN
Sbjct: 275 VMIALSVIAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTL----------GFFIFNDIGV 324
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
G+ +I + F F I +L + ++ E+ + G+ P A ++F +
Sbjct: 325 SGGIVQMIAHGFVSGAMFLCIGVLYDRVHSR--EIASYGGVVNTMPKFAAFALLFAMANC 382
Query: 866 GFPPTIGFYAKFFI 879
G P T GF ++ +
Sbjct: 383 GLPGTAGFVGEWMV 396
>gi|357417094|ref|YP_004930114.1| NADH:ubiquinone oxidoreductase subunit M [Pseudoxanthomonas spadix
BD-a59]
gi|355334672|gb|AER56073.1| NADH:ubiquinone oxidoreductase subunit M [Pseudoxanthomonas spadix
BD-a59]
Length = 506
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/385 (52%), Positives = 280/385 (72%), Gaps = 17/385 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ F+I+Y LG DG+S+ I LT TL+ ++ + I K++ +Y++AFL+L G+
Sbjct: 63 EKHAWVSAFDIWYALGADGISVALIVLTTLTTLLALIGAWTAIDKRVNQYVAAFLMLEGM 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F A D +LFY+FFEA LIP+F+IIG WGG R YA+IKFFLYT +GS+LML+ +IY
Sbjct: 123 MIGVFSATDAILFYVFFEAMLIPMFLIIGIWGGPRRIYASIKFFLYTFLGSVLMLVGLIY 182
Query: 340 LYY----ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
LY + + SF + L +T EQ WLF F IAFA+K+P++P+HTWLPDAHVEAP
Sbjct: 183 LYMKGGELGHASFQFADLYILLLTAREQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 242
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILAAIMLK+G YG LRFSLPI PDA++ + L+I LSLI I+Y+ L+A+VQ D+K
Sbjct: 243 TAGSVILAAIMLKIGGYGFLRFSLPITPDAAHEWGQLVIVLSLIGIVYVGLVALVQEDMK 302
Query: 456 KLIAYSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIG 503
KLIAYSS++HMGFVTLG F+ ++ +QGA++QMISH L+S AMF +G
Sbjct: 303 KLIAYSSVSHMGFVTLGTFIAAGLMRDYDNGDAARLGLQGAVVQMISHGLVSGAMFSLVG 362
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
+Y++M TR+I ++GG+ NV+P F+VFF+ F +AN LPGTSGF+GEFM+IL++ + +
Sbjct: 363 VVYDRMHTRMIKDYGGVANVMPWFAVFFVFFGMANSGLPGTSGFVGEFMVILASFQKHPY 422
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
I V+ + LI A Y+L L K +++
Sbjct: 423 IAVVAALTLIIGAGYTLWLVKRVLY 447
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 100/188 (53%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K FP+HTWLPD+ +E PT A ++I AA M+ G + R S P+ + ++ +++
Sbjct: 224 KVPMFPVHTWLPDAHVEAPT-AGSVILAAIMLKIGGYGFLRFSLPITPDAAHEWGQLVIV 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------- 151
+ I ++GL+ ++Q D+K++IAYS++S +G++T+G ++A +
Sbjct: 283 LSLIGIVYVGLVALVQEDMKKLIAYSSVSHMGFVTLGTFIAAGLMRDYDNGDAARLGLQG 342
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H +F G ++ + H + I++ GG+ MP + + ++ G P
Sbjct: 343 AVVQMISHGLVSGAMFSLVG-VVYDRMHTRMIKDYGGVANVMPWFAVFFVFFGMANSGLP 401
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 402 GTSGFVGE 409
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 123/268 (45%), Gaps = 19/268 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
A+IK+F+ L S ML G+ LY G L S F L + + + L ++
Sbjct: 161 ASIKFFLYTFLGSVLMLVGLIYLYMKGGELGHAS-FQFADLYILLLTAREQTWLFFAFLI 219
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
+ K+ + P H W+PD + A +++L+ + L + Y L + LP+ +
Sbjct: 220 AFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IMLKIGGYGFL-RFSLPITPDAAHE 275
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG---LMLFSIISIKTSHNNLII 801
W +++++L++ ++ + A+ Q + K++IAYSS++HMG L F + ++N
Sbjct: 276 WGQLVIVLSLIGIVYVGLVALVQEDMKKLIAYSSVSHMGFVTLGTFIAAGLMRDYDN--- 332
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMI 859
++ GL + + + G + L ++ T + + G+ PW A+ +
Sbjct: 333 GDAARLGLQGAVVQMISHGLVSGAMFSLVGVVYDRMHTRMIKDYGGVANVMPWFAVFFVF 392
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
F + +G P T GF +F + F+
Sbjct: 393 FGMANSGLPGTSGFVGEFMVILASFQKH 420
>gi|13471394|ref|NP_102960.1| NADH dehydrogenase subunit M [Mesorhizobium loti MAFF303099]
gi|14022136|dbj|BAB48746.1| NADH-ubiquinone dehydrogenase chain 13 [Mesorhizobium loti
MAFF303099]
Length = 501
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/400 (50%), Positives = 290/400 (72%), Gaps = 5/400 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+D I Y +G+DG+S+ F+ LT F+ + IL S + I+K++ YM AFL+L L
Sbjct: 68 EKAAWLDS-GISYHMGVDGISMLFVILTTFLMPLCILASWEAIEKRVKAYMIAFLLLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL GS+LML++++
Sbjct: 127 MIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
++Y S + +I + S Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MFYQSGTT-DIPTLLTHSFPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS F+ L+ TLS+++IIY SL+A++Q D+KKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQDDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF + + +QGAI QM+SH L+S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGF+GEF+ +L + N + +T +I SAAY+
Sbjct: 366 LVNNMPKYATVFMVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAAYA 425
Query: 580 LCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLI 619
L L + +IF G + S LL + L +++ L L+
Sbjct: 426 LWLYRRVIF--GALTKDSLKGLLDLSLREKVIIYPLVALV 463
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q+D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQDDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP ++ ++ VG P SGF +
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREIAAYGGLVNNMPKYATVFMVFTMANVGLPGTSGFVGE 396
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML I ++ +GT ++ ++ ++ ++ L
Sbjct: 165 ASFKFFLYTLAGSVLMLLAIMAMFYQSGTTDIPTLLT----HSFPANMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L + PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 281 T-------LSVVAIIYTSLVALMQDDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQGAIFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + GA + + + + + T E+ + GL P A + M+F +
Sbjct: 334 MLSHGL---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNNMPKYATVFMVFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F +F
Sbjct: 384 NVGLPGTSGFVGEFLTMLGVFR 405
>gi|359790548|ref|ZP_09293440.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359253490|gb|EHK56613.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 514
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/410 (49%), Positives = 293/410 (71%), Gaps = 8/410 (1%)
Query: 180 NQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDG 239
++IRN+ L T T ++ L G + + +K W+D I Y +G+DG
Sbjct: 32 RRNIRNVALL-----TTVFTFMLSLFIWAGFDYADTGFQMVEKADWLDS-GISYHMGVDG 85
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+S+ F+ LT F+ + IL S + I+ ++ EYM AFLIL L+IG F ALD +LFY+FFEA
Sbjct: 86 ISMLFVILTTFLMPLCILASWNSIEHRVKEYMIAFLILETLMIGVFTALDIVLFYVFFEA 145
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
LIP+FIIIG WGG R YA+ KFFLYTL+GS+LML++++ +++ + + +I +
Sbjct: 146 GLIPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAIMAMFFQAGTT-DIPTLLGHDF 204
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G YG LRFS
Sbjct: 205 PAGMQLWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRFS 264
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LP+FPDAS YF L+ LS+++IIY SL+A++Q D+KKLIAYSS+AHMGFVT+GIF + +
Sbjct: 265 LPMFPDASLYFQPLVFALSIVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQ 324
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
IQG+I QM+SH L+S A+F+ +G +Y++M TR I+ +GG++N +P ++V F+IF++AN
Sbjct: 325 EGIQGSIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMPKYAVVFMIFTMAN 384
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEF+ +L + N + + +T +I SAAY+L L + +IF
Sbjct: 385 VGLPGTSGFVGEFLTLLGVFRVNTWVALFAATGVILSAAYALWLYRKVIF 434
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPDASLYFQPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+I A + L+ ++Q D+K++IAYS+++ +G++T+G + SIF +++H
Sbjct: 282 LSIVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGIQGSIFQMLSHGLVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + +I ++ VG P SGF +
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAYGGLVNNMPKYAVVFMIFTMANVGLPGTSGFVGE 396
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 31/271 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I ++ GT ++ ++ ++ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMAMFFQAGTTDIPTLLG----HDFPAGMQLWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+ +
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFLRFSLPMFPDAS 272
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+Q ++ L+I ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 273 LYFQPLVFALSIVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGIQGSIF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL + GA + + + + + T E+ + GL P A++ MIF
Sbjct: 333 QMLSHGL---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNNMPKYAVVFMIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 383 ANVGLPGTSGFVGEFLTLLGVFRVNT-WVAL 412
>gi|395766619|ref|ZP_10447158.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella doshiae NCTC 12862]
gi|395415743|gb|EJF82170.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella doshiae NCTC 12862]
Length = 489
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 285/382 (74%), Gaps = 7/382 (1%)
Query: 213 FSGFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
++GF + ++ FN I Y +GIDG+S+ F+ L+AF+ IL S + IK +L
Sbjct: 54 WAGFDHTNAHFQMVEKFNWLGGGISYHMGIDGISILFVVLSAFLLPFCILASWENIKDRL 113
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
YM AFL+L IIG FCALD +LFY+FFE +LIP+FIIIG WGG+ R YA++KFFLYT
Sbjct: 114 KAYMIAFLLLEVAIIGVFCALDAILFYVFFEGSLIPMFIIIGVWGGNRRVYASMKFFLYT 173
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML++++ +Y+ S + +I + QIWL++ FF +FA+K+P+WP+HTW
Sbjct: 174 LLGSVLMLVALMAMYWESG-TLDIPTLLNHQFPAHMQIWLWLAFFASFAVKMPMWPVHTW 232
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSVILA ++LKLG YG LRFSLP+FP AS F+ L+ TLSLI+IIY SL
Sbjct: 233 LPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASANFAPLVFTLSLIAIIYTSL 292
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+VQ DIKKLIAYSSIAHMG+VT+GIF + +IQGAI QM+SH ++S+A+F+ +G +Y
Sbjct: 293 VALVQSDIKKLIAYSSIAHMGYVTMGIFAANEQAIQGAIYQMLSHGIVSAALFLCVGVIY 352
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TR IS FGG++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N CI V
Sbjct: 353 DRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKCIVV 412
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 413 FATTGVILSAAYALYLYRRVVF 434
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASANFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + A +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQSDIKKLIAYSSIAHMGYVTMGIFAANEQAIQGAIYQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 342 AALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 150/361 (41%), Gaps = 61/361 (16%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML + +Y +GTL++ ++ N + + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVALMAMYWESGTLDIPTLLN----HQFPAHMQIWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
N+ ++ L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 273 ANFAPLVFTLSLIAIIYTSLVALVQSDIKKLIAYSSIAHMGYVTMGIFAANEQAIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYI 922
+ G P + GF +F +F+ K C ++ A G I+
Sbjct: 383 ANVGLPGSSGFLGEFLTLIGVFQVNK---------CIVVFATTGVILSAA---------- 423
Query: 923 VEAIKAARKSALIINRGSLELENLR--FEEKKYENFVFNINKASEKIITKILFNTYPSYA 980
A+ R+ GSL+ ENL+ + E F+ +I I F YP+
Sbjct: 424 -YALYLYRRVVF----GSLDKENLKVLVDLSSREKFILY-----PMVILTIFFGIYPTPI 473
Query: 981 F 981
F
Sbjct: 474 F 474
>gi|417557688|ref|ZP_12208709.1| NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Xylella
fastidiosa EB92.1]
gi|338179716|gb|EGO82641.1| NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Xylella
fastidiosa EB92.1]
Length = 480
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 283/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
++ +WI ++I Y LG+DG+++ + LT +T+++++ S I++++ +Y++AFLIL G+
Sbjct: 42 EQHVWIQTYSIGYNLGVDGIAIALVLLTTLVTVLVLIGSWGSIQQRVPQYVAAFLILEGV 101
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IG F A D MLFY+FFEA LIP+F+IIG WGG R YAAIKFFLYT +GS+LML+ +IY
Sbjct: 102 TIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIY 161
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + + ++ EQ WLF F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 162 LY-LKGGSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 220
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS+ F+ ++I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 221 VILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIA 280
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLGIF+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 281 YSSIAHMGFVTLGIFIAFTLVRDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYD 340
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR I+++GG++NV+P F+ F I+F +AN LPGTSGF+GEFM+IL++ + + +
Sbjct: 341 RMHTRRIADYGGVVNVMPWFATFAILFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFG 400
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
T L+ +AAY+L L K + F
Sbjct: 401 AGTTLVITAAYTLWLYKRVFF 421
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 198 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIAL 257
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIF------------- 154
I ++GL+ ++Q D+K++IAYS+++ +G++T+G+ ++ V F
Sbjct: 258 SLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFIAFTLVRDFGNTDAARLGLQGA 317
Query: 155 --HLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 318 MVQMISHGFVSGAMFTCIG-VLYDRMHTRRIADYGGVVNVMPWFATFAILFYMANAGLPG 376
Query: 213 FSGFYSK 219
SGF +
Sbjct: 377 TSGFVGE 383
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 129/270 (47%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ L S ML G+ LY G+ +L ++ ++L+ + L + L +
Sbjct: 140 AAIKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLY-AMQLSAKEQTWLFFAFL---IAF 195
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK--- 747
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V +
Sbjct: 196 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 251
Query: 748 -ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + I T + F + D
Sbjct: 252 WVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFIAFTLVRD---FGNTD 308
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A ++
Sbjct: 309 AARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRM--HTRRIADYGGVVNVMPWFATFAIL 366
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 367 FYMANAGLPGTSGFVGEFMVILASFQKHPL 396
>gi|395778238|ref|ZP_10458750.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella elizabethae Re6043vi]
gi|423715505|ref|ZP_17689729.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella elizabethae F9251]
gi|395417446|gb|EJF83783.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella elizabethae Re6043vi]
gi|395429632|gb|EJF95693.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella elizabethae F9251]
Length = 498
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/360 (54%), Positives = 277/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + +K++L YM AFL+L IIG FCALD
Sbjct: 85 GISYHMGVDGISILFVVLSAFLLPFCILASWENVKERLKAYMIAFLLLEVAIIGVFCALD 144
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYTL+GS+LML++++ +Y+ + +
Sbjct: 145 AILFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLMLVALMAMYWQAG-TL 203
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 204 DIPTLLNYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 263
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ L+ TLSLI+IIY SL+A+VQ DIKKLIAYSSIAHMG+
Sbjct: 264 LGGYGFLRFSLPMFPIASADFAPLVFTLSLIAIIYTSLVALVQSDIKKLIAYSSIAHMGY 323
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++
Sbjct: 324 VTMGIFAANEQAIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYA 383
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGF+GEF+ ++ + N + +L +T +I SAAY+L L + +IF
Sbjct: 384 VVFLIFTMANVGLPGTSGFLGEFLTLIGVFQVNKLVVILATTGVILSAAYALYLYRRVIF 443
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + A +I+ +++H
Sbjct: 291 LSLIAIIYTSLVALVQSDIKKLIAYSSIAHMGYVTMGIFAANEQAIQGAIYQMLSHGIVS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 351 AALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGTSGFLGE 405
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 149/358 (41%), Gaps = 61/358 (17%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ N + L
Sbjct: 174 ASIKFFLYTLLGSVLMLVALMAMYWQAGTLDIPTLLN----YQFPAHMQIWLWLAFFASF 229
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 281
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 282 ADFAPLVFTLSLIAIIYTSLVALVQSDIKKLIAYSSIAHMGYVTMGIFAANEQAIQGAIY 341
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 342 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 391
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYI 922
+ G P T GF +F +F+ K+ ++L A G I+
Sbjct: 392 ANVGLPGTSGFLGEFLTLIGVFQVNKLVVIL---------ATTGVILSAA---------- 432
Query: 923 VEAIKAARKSALIINRGSLELENLR--FEEKKYENFVFNINKASEKIITKILFNTYPS 978
A+ R+ + GSL+ ENL+ + E F+ +I I F YP+
Sbjct: 433 -YALYLYRR----VIFGSLDKENLKVLIDLSSREKFILY-----PMVILTIFFGIYPT 480
>gi|144900798|emb|CAM77662.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Magnetospirillum gryphiswaldense MSR-1]
Length = 504
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 180/376 (47%), Positives = 279/376 (74%), Gaps = 2/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
S + + +W+ I Y +G+DG+S+WF+ L F+T I IL S+ ++K++ EYM A
Sbjct: 61 SAEFQLKESAVWLPGTAITYSMGVDGISVWFVLLATFLTPICILSSVGAVEKRVKEYMVA 120
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L +++G FCALD +LFY+FFE L+P+FIIIG WGG+ R YAA K FLYTL+GS+L
Sbjct: 121 FLVLETMMVGMFCALDMVLFYVFFEGVLLPMFIIIGVWGGARRVYAAYKLFLYTLLGSVL 180
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++M+ +Y+ ++ +I + S + Q+WL++ FF +FA+K+P+WP+HTWLPDAHV
Sbjct: 181 MLVAMLAMYF-DARTTDIPTLMAHSFPQAMQLWLWLAFFASFAVKVPMWPVHTWLPDAHV 239
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSVILA ++LK+G YG +RFS+P+FP A+ YF+ L+ TLS++++IY SL+A+VQ
Sbjct: 240 EAPTAGSVILAGVLLKMGAYGFIRFSVPMFPLATEYFTPLVYTLSIVAVIYTSLVALVQE 299
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSS+AHMG+VT+GIF +T ++GA+ QM+SH ++S A+F+ +G +Y++M TR
Sbjct: 300 DMKKLIAYSSVAHMGYVTIGIFSMTTQGVEGALYQMLSHGVVSGALFLCVGVVYDRMHTR 359
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG+ +P +++ F+ ++A+ LPGT GFIGEF+++L + N + + +T L
Sbjct: 360 EIARYGGLAERMPKYALVFMFMTMASVGLPGTGGFIGEFLVLLGVFQVNTWVALFAATGL 419
Query: 573 IFSAAYSLCLSKNIIF 588
+ AAY+L L + ++F
Sbjct: 420 VLGAAYALYLYRRVVF 435
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 99/176 (56%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L+ + +++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGAYGFIRFSVPMFPLATEYFTPLVYT 282
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q D+K++IAYS+++ +GY+T+G+ GV +++ +++H
Sbjct: 283 LSIVAVIYTSLVALVQEDMKKLIAYSSVAHMGYVTIGIFSMTTQGVEG---ALYQMLSHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL + MP + + ++ VG P GF
Sbjct: 340 VVSGALFLCVG-VVYDRMHTREIARYGGLAERMPKYALVFMFMTMASVGLPGTGGF 394
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 39/298 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K F+ +L S ML + +Y T ++ ++ ++ ++ L
Sbjct: 166 AAYKLFLYTLLGSVLMLVAMLAMYFDARTTDIPTLMA----HSFPQAMQLWLWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL + V ++ L + PLV
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFIRFSVPMFPLATEYFTPLVY 281
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L+I ++I ++ A+ Q + K++IAYSS+AHMG + I S+ T ++
Sbjct: 282 T-------LSIVAVIYTSLVALVQEDMKKLIAYSSVAHMGYVTIGIFSMTTQGVEGALYQ 334
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+ + GA + + + + + T E+ + GL +R P AL+ M +
Sbjct: 335 MLSHGV---------VSGALFLCVGVVYDRMH-TREIARYGGLAERMPKYALVFMFMTMA 384
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKG----------GRIIKD 911
G P T GF +F + +F+ W+ L ++GA GR+ +D
Sbjct: 385 SVGLPGTGGFIGEFLVLLGVFQVNT-WVALFAATGLVLGAAYALYLYRRVVFGRLTRD 441
>gi|334143744|ref|YP_004536900.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thioalkalimicrobium cyclicum ALM1]
gi|333964655|gb|AEG31421.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioalkalimicrobium cyclicum ALM1]
Length = 505
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/381 (53%), Positives = 283/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI +NIYYFLG+DGLS+ + LT F +++I + IK ++ +YM AF+I+ G+
Sbjct: 66 ERVEWIPQYNIYYFLGVDGLSMPLVLLTTFTQVLVIASAWTVIKNRVEQYMGAFMIMQGI 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +L+Y+F+EA LIP+FI+IG WGG R YA +KFF+YT +GS+ MLI+ +Y
Sbjct: 126 MIGVFTSLDAVLYYVFWEAVLIPMFIVIGIWGGPRRVYATMKFFIYTFLGSVFMLIAFLY 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ SF+IL +H + + QI +F+ F +AFA+KIP++P+HTWLPDAHVEAPT GS
Sbjct: 186 MYF-QIGSFSILDFHAMPLGITAQILIFLAFLVAFAVKIPMFPVHTWLPDAHVEAPTAGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG +RFSLPI PDA+ LII LSLI+I+YI IA++Q D+KKL+A
Sbjct: 245 VILAAIMLKMGGYGFVRFSLPITPDAAATLDWLIILLSLIAIVYIGFIALIQSDMKKLVA 304
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG+F++ I ++GA++QMISH IS AMF++IG LY+
Sbjct: 305 YSSIAHMGFVTLGMFLVYSIVAKTGDTQGAALGMEGAMVQMISHGFISGAMFLAIGVLYD 364
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR IS +GG++N +P F+ F ++F++AN LPGTSGF+GEFM+ILSA K N GVL
Sbjct: 365 RMHTRDISAYGGVVNTMPWFAFFAVLFAMANAGLPGTSGFVGEFMVILSAFKANVWFGVL 424
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L + K ++F
Sbjct: 425 AATTLIVGAAYTLWMIKRVVF 445
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 112/209 (53%), Gaps = 22/209 (10%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL ITA + FL + K FP+HTWLPD+ +E PT A ++I AA M+ G +
Sbjct: 202 PLGITAQILIFLAFLVAFAVKIPMFPVHTWLPDAHVEAPT-AGSVILAAIMLKMGGYGFV 260
Query: 89 RMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV 146
R S P+ + L +I+ + I ++G + +IQ+D+K+++AYS+++ +G++T+G+ +
Sbjct: 261 RFSLPITPDAAATLDWLIILLSLIAIVYIGFIALIQSDMKKLVAYSSIAHMGFVTLGMFL 320
Query: 147 SAYTV----------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLY 190
Y++ ++ +++H F +FL+ G ++ + H +DI GG+
Sbjct: 321 -VYSIVAKTGDTQGAALGMEGAMVQMISHGFISGAMFLAIG-VLYDRMHTRDISAYGGVV 378
Query: 191 KYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 379 NTMPWFAFFAVLFAMANAGLPGTSGFVGE 407
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 23/284 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
A +K+FI L S FML +Y G+ F+++ + + + A L L +V
Sbjct: 164 ATMKFFIYTFLGSVFMLIAFLYMYFQIGS------FSILDFHAMPLGITAQILIFLAFLV 217
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVII-YRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + A +++L+ K+ + + + L I ++W
Sbjct: 218 AFAVKIPMFPVHTWLPDAHVEAPTAGSVILAAIMLKMGGYGFVRFSLPITPDAAATLDWL 277
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIKTSHNNLI 800
ILL L + IG + A+ Q + K+++AYSSIAHMG +++SI++ KT
Sbjct: 278 IILLSLIA-IVYIGFI-ALIQSDMKKLVAYSSIAHMGFVTLGMFLVYSIVA-KTGDTQGA 334
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ + +I++ F F I +L + T ++ + G+ PW A ++F
Sbjct: 335 ALG-MEGAMVQMISHGFISGAMFLAIGVLYDRM--HTRDISAYGGVVNTMPWFAFFAVLF 391
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ +W +L ++GA
Sbjct: 392 AMANAGLPGTSGFVGEFMVILSAFKA-NVWFGVLAATTLIVGAA 434
>gi|306841948|ref|ZP_07474626.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
sp. BO2]
gi|306287981|gb|EFM59389.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
sp. BO2]
Length = 502
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|225627311|ref|ZP_03785348.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
ceti str. Cudo]
gi|261758022|ref|ZP_06001731.1| NADH-ubiquinone oxidoreductase [Brucella sp. F5/99]
gi|225617316|gb|EEH14361.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
ceti str. Cudo]
gi|261738006|gb|EEY26002.1| NADH-ubiquinone oxidoreductase [Brucella sp. F5/99]
Length = 502
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|114569917|ref|YP_756597.1| NADH dehydrogenase subunit M [Maricaulis maris MCS10]
gi|114340379|gb|ABI65659.1| NADH dehydrogenase subunit M [Maricaulis maris MCS10]
Length = 504
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/364 (51%), Positives = 273/364 (75%), Gaps = 1/364 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
W++ + Y +G+DGLS+ F+ LTAF+ I I+ S IK ++A+YM AFL+L ++IG F
Sbjct: 79 WLEQIGLGYRMGVDGLSILFVVLTAFLMPICIMASGAIKTRVADYMIAFLLLETMVIGVF 138
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS 344
CALD +LFYIFFE LIP+FIIIG WGG NR YAA KFFLYTL+GS+LML++MI ++ +
Sbjct: 139 CALDLVLFYIFFEGGLIPMFIIIGVWGGQNRVYAAFKFFLYTLLGSVLMLVAMIVMFLQA 198
Query: 345 NKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAA 404
+ ++ + + Q+W+++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA
Sbjct: 199 GTT-DVTVLLETEFARNAQMWMWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 257
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
++LKLG YG LRFSLP+FP+AS YF+ ++ LS+I+IIY SL+A Q DIKKLIAYSS+A
Sbjct: 258 VLLKLGGYGFLRFSLPMFPEASDYFAPMVFVLSIIAIIYTSLVAFRQTDIKKLIAYSSVA 317
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVI 524
HMGFVT+G+F + + +QGAI QMISH +IS A+F+ +G +Y++M TR I+ +GG+++ +
Sbjct: 318 HMGFVTMGLFAMNETGVQGAIFQMISHGVISGALFLCVGVIYDRMHTREIAFYGGLVHRM 377
Query: 525 PHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSK 584
P F+ F +F++AN LPGTSGF+GE M ++ A + ++ I + +I SA Y L + +
Sbjct: 378 PVFAAIFGLFAMANVGLPGTSGFVGEIMTMVGAFQVSWWIATGAAVGVILSAMYMLTVYR 437
Query: 585 NIIF 588
+++F
Sbjct: 438 DVVF 441
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 102/181 (56%), Gaps = 18/181 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ + ++F+
Sbjct: 230 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPEASDYFAPMVFV 288
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ Q DIK++IAYS+++ +G++T+GL GV +IF +++H
Sbjct: 289 LSIIAIIYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGLFAMNETGVQG---AIFQMISHG 345
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSL--VGAPFFSGFYS 218
LFL G +I + H ++I GGL MP+ ++ GL ++ VG P SGF
Sbjct: 346 VISGALFLCVG-VIYDRMHTREIAFYGGLVHRMPV--FAAIFGLFAMANVGLPGTSGFVG 402
Query: 219 K 219
+
Sbjct: 403 E 403
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 33/262 (12%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
+N ++ AA K+F+ +L S ML + +++ GT ++ + N +
Sbjct: 167 QNRVY---AAFKFFLYTLLGSVLMLVAMIVMFLQAGTTDVTVLLETEFARNAQMWMW--- 220
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCL 738
L + K+ + P H W+PD + A +++L+ ++ +L ++
Sbjct: 221 -LAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG--------VLLKLGGYGFLRFS 271
Query: 739 LPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT 794
LP+ + ++ +L+I ++I ++ A Q + K++IAYSS+AHMG + + ++
Sbjct: 272 LPMFPEASDYFAPMVFVLSIIAIIYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGLFAMNE 331
Query: 795 SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCA 854
+ IF G+ I GA + + + + + T E+ + GL R P A
Sbjct: 332 TGVQGAIFQMISHGV---------ISGALFLCVGVIYDRMH-TREIAFYGGLVHRMPVFA 381
Query: 855 LIMMIFMFSLAGFPPTIGFYAK 876
I +F + G P T GF +
Sbjct: 382 AIFGLFAMANVGLPGTSGFVGE 403
>gi|28198183|ref|NP_778497.1| NADH dehydrogenase subunit M [Xylella fastidiosa Temecula1]
gi|182680817|ref|YP_001828977.1| NADH dehydrogenase subunit M [Xylella fastidiosa M23]
gi|386084337|ref|YP_006000619.1| NADH dehydrogenase subunit M [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|28056253|gb|AAO28146.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xylella fastidiosa
Temecula1]
gi|182630927|gb|ACB91703.1| proton-translocating NADH-quinone oxidoreductase, chain M [Xylella
fastidiosa M23]
gi|307579284|gb|ADN63253.1| NADH dehydrogenase subunit M [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 501
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/381 (52%), Positives = 283/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
++ +WI ++I Y LG+DG+++ + LT +T+++++ S I++++ +Y++AFLIL G+
Sbjct: 63 EQHVWIQTYSIGYNLGVDGIAIALVLLTTLVTVLVLIGSWGSIQQRVPQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IG F A D MLFY+FFEA LIP+F+IIG WGG R YAAIKFFLYT +GS+LML+ +IY
Sbjct: 123 TIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + + ++ EQ WLF F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-LKGGSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS+ F+ ++I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLGIF+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 302 YSSIAHMGFVTLGIFIAFTLVRDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR I+++GG++NV+P F+ F I+F +AN LPGTSGF+GEFM+IL++ + + +
Sbjct: 362 RMHTRRIADYGGVVNVMPWFATFAILFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
T L+ +AAY+L L K + F
Sbjct: 422 AGTTLVITAAYTLWLYKRVFF 442
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIF------------- 154
I ++GL+ ++Q D+K++IAYS+++ +G++T+G+ ++ V F
Sbjct: 279 SLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFIAFTLVRDFGNTDAARLGLQGA 338
Query: 155 --HLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 339 MVQMISHGFVSGAMFTCIG-VLYDRMHTRRIADYGGVVNVMPWFATFAILFYMANAGLPG 397
Query: 213 FSGFYSK 219
SGF +
Sbjct: 398 TSGFVGE 404
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 130/270 (48%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ L S ML G+ LY G+ +L ++ ++L+ + L + L +
Sbjct: 161 AAIKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLY-AMQLSAKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + +
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + I T + F + D
Sbjct: 273 WVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFIAFTLVRD---FGNTD 329
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A ++
Sbjct: 330 AARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRM--HTRRIADYGGVVNVMPWFATFAIL 387
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 388 FYMANAGLPGTSGFVGEFMVILASFQKHPL 417
>gi|265983910|ref|ZP_06096645.1| proton-translocating NADH-quinone oxidoreductase [Brucella sp.
83/13]
gi|306838229|ref|ZP_07471081.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
sp. NF 2653]
gi|264662502|gb|EEZ32763.1| proton-translocating NADH-quinone oxidoreductase [Brucella sp.
83/13]
gi|306406673|gb|EFM62900.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
sp. NF 2653]
Length = 502
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|17987429|ref|NP_540063.1| NADH dehydrogenase subunit M [Brucella melitensis bv. 1 str. 16M]
gi|23501701|ref|NP_697828.1| NADH dehydrogenase subunit M [Brucella suis 1330]
gi|163843087|ref|YP_001627491.1| NADH dehydrogenase subunit M [Brucella suis ATCC 23445]
gi|225852330|ref|YP_002732563.1| NADH dehydrogenase subunit M [Brucella melitensis ATCC 23457]
gi|256264171|ref|ZP_05466703.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 2 str.
63/9]
gi|256369246|ref|YP_003106754.1| NADH dehydrogenase subunit M [Brucella microti CCM 4915]
gi|260563847|ref|ZP_05834333.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M]
gi|261218826|ref|ZP_05933107.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
M13/05/1]
gi|261314433|ref|ZP_05953630.1| proton-translocating NADH-quinone oxidoreductase [Brucella
pinnipedialis M163/99/10]
gi|261317468|ref|ZP_05956665.1| proton-translocating NADH-quinone oxidoreductase [Brucella
pinnipedialis B2/94]
gi|261321675|ref|ZP_05960872.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
M644/93/1]
gi|261324926|ref|ZP_05964123.1| proton-translocating NADH-quinone oxidoreductase [Brucella neotomae
5K33]
gi|261752135|ref|ZP_05995844.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv.
5 str. 513]
gi|265988504|ref|ZP_06101061.1| proton-translocating NADH-quinone oxidoreductase [Brucella
pinnipedialis M292/94/1]
gi|265990917|ref|ZP_06103474.1| proton-translocating NADH-quinone oxidoreductase [Brucella
melitensis bv. 1 str. Rev.1]
gi|294852171|ref|ZP_06792844.1| NADH dehydrogenase I subunit M [Brucella sp. NVSL 07-0026]
gi|306843751|ref|ZP_07476350.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
inopinata BO1]
gi|340790445|ref|YP_004755910.1| NADH dehydrogenase subunit M [Brucella pinnipedialis B2/94]
gi|376280494|ref|YP_005154500.1| NADH dehydrogenase subunit M [Brucella suis VBI22]
gi|384211190|ref|YP_005600272.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Brucella melitensis M5-90]
gi|384224488|ref|YP_005615652.1| NADH dehydrogenase subunit M [Brucella suis 1330]
gi|384408290|ref|YP_005596911.1| NADH dehydrogenase subunit M [Brucella melitensis M28]
gi|384444895|ref|YP_005603614.1| NADH dehydrogenase subunit M [Brucella melitensis NI]
gi|17983121|gb|AAL52327.1| NADH-quinone oxidoreductase chain m [Brucella melitensis bv. 1 str.
16M]
gi|23347624|gb|AAN29743.1| NADH dehydrogenase I, M subunit [Brucella suis 1330]
gi|163673810|gb|ABY37921.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
suis ATCC 23445]
gi|225640695|gb|ACO00609.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
melitensis ATCC 23457]
gi|255999406|gb|ACU47805.1| NADH dehydrogenase subunit M [Brucella microti CCM 4915]
gi|260153863|gb|EEW88955.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M]
gi|260923915|gb|EEX90483.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
M13/05/1]
gi|261294365|gb|EEX97861.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
M644/93/1]
gi|261296691|gb|EEY00188.1| proton-translocating NADH-quinone oxidoreductase [Brucella
pinnipedialis B2/94]
gi|261300906|gb|EEY04403.1| proton-translocating NADH-quinone oxidoreductase [Brucella neotomae
5K33]
gi|261303459|gb|EEY06956.1| proton-translocating NADH-quinone oxidoreductase [Brucella
pinnipedialis M163/99/10]
gi|261741888|gb|EEY29814.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv.
5 str. 513]
gi|263001701|gb|EEZ14276.1| proton-translocating NADH-quinone oxidoreductase [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094389|gb|EEZ18234.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 2 str.
63/9]
gi|264660701|gb|EEZ30962.1| proton-translocating NADH-quinone oxidoreductase [Brucella
pinnipedialis M292/94/1]
gi|294820760|gb|EFG37759.1| NADH dehydrogenase I subunit M [Brucella sp. NVSL 07-0026]
gi|306275942|gb|EFM57655.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
inopinata BO1]
gi|326408837|gb|ADZ65902.1| NADH dehydrogenase subunit M [Brucella melitensis M28]
gi|326538553|gb|ADZ86768.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
melitensis M5-90]
gi|340558904|gb|AEK54142.1| NADH dehydrogenase, subunit M [Brucella pinnipedialis B2/94]
gi|343382668|gb|AEM18160.1| NADH dehydrogenase subunit M [Brucella suis 1330]
gi|349742889|gb|AEQ08432.1| NADH dehydrogenase subunit M [Brucella melitensis NI]
gi|358258093|gb|AEU05828.1| NADH dehydrogenase subunit M [Brucella suis VBI22]
Length = 502
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|395765847|ref|ZP_10446438.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella sp. DB5-6]
gi|395410852|gb|EJF77399.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella sp. DB5-6]
Length = 489
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/382 (52%), Positives = 284/382 (74%), Gaps = 7/382 (1%)
Query: 213 FSGFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
++GF S + ++ FN I+Y +GIDG+S+ F+ L+AF+ +L S + IK +L
Sbjct: 54 WAGFDSTNPNFQMVEKFNWLGSGIHYHMGIDGISVLFVVLSAFLLPFCVLASWENIKDRL 113
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
YM AFL+L IIG FCALD MLFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYT
Sbjct: 114 KAYMIAFLLLEVAIIGVFCALDAMLFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYT 173
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML++++ +Y+ +I + + Q+WL++ FF +FA+K+P+WP+HTW
Sbjct: 174 LLGSVLMLVALMTMYW-EVGILDIPTLLNYQFPEHMQMWLWLAFFASFAVKMPMWPVHTW 232
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSVILA ++LKLG YG LRFSLP+FP AS F+ L+ TLSLI+IIY SL
Sbjct: 233 LPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFTLSLIAIIYTSL 292
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
IA+VQ DIKKLIAYSSIAHMG+VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y
Sbjct: 293 IALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIY 352
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TR IS FGG++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N + V
Sbjct: 353 DRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVAV 412
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 413 FATTGVILSAAYALYLYRCVVF 434
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLIALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y G L++ ++ N ++ + L
Sbjct: 165 ASIKFFLYTLLGSVLMLVALMTMYWEVGILDIPTLLNYQFPEHMQMWLW----LAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 273 ADFAPLVFTLSLIAIIYTSLIALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P + GF +F +F+ K+
Sbjct: 383 ANVGLPGSSGFLGEFLTLIGVFQVNKL 409
>gi|381156963|ref|ZP_09866197.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiorhodovibrio sp. 970]
gi|380880826|gb|EIC22916.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiorhodovibrio sp. 970]
Length = 517
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/377 (53%), Positives = 279/377 (74%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ F+++YFLG+DG+S+ I LT FIT+ +++ D I K + YM+AFLI+ G+++G
Sbjct: 69 WVPSFDVFYFLGVDGISMPLIILTTFITIFVVVAGWDVISYKPSLYMAAFLIMEGIMVGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+F+EA LIP+FI+IG WGG NR YA IKFFLYT GS+ ML+++IY+Y+
Sbjct: 129 FSALDAILFYVFWEAMLIPMFIVIGVWGGPNRVYATIKFFLYTFFGSVFMLVALIYMYFQ 188
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
S SF+IL +H L + QI +FI F +AFA+K+P++P+HTWLPDAHVEAPT GSVILA
Sbjct: 189 SG-SFSILDYHALPLGMTAQILIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGSVILA 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLK+G YG LRFSLPI PDAS II LSLI+I+YI +A+VQ D+KKLIAYSSI
Sbjct: 248 AIMLKIGGYGFLRFSLPITPDASAALDGFIIALSLIAIVYIGFVALVQKDMKKLIAYSSI 307
Query: 464 AHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG F++ I I+G ++QMISH IS A+F+ +G LY+++ +
Sbjct: 308 AHMGFVTLGFFLVFAIFRQPEVSSGAVMGIEGGMVQMISHGFISGALFLCVGVLYDRLHS 367
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I+++GG+INV+P F F + F++AN LPGTSGF+GE M+IL+A + +F L +T
Sbjct: 368 REIADYGGVINVMPWFGGFMVFFAMANAGLPGTSGFVGELMVILAAFRADFWYAFLAATT 427
Query: 572 LIFSAAYSLCLSKNIIF 588
LI +AA++L + K ++F
Sbjct: 428 LILAAAFTLWMVKRVVF 444
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 20/183 (10%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL +TA + F+ + K FP+HTWLPD+ +E PT S +I AA M+ G +
Sbjct: 201 PLGMTAQILIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGS-VILAAIMLKIGGYGFL 259
Query: 89 RMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-- 144
R S P+ ++ AL I+ + I ++G + ++Q D+K++IAYS+++ +G++T+G
Sbjct: 260 RFSLPITPDASAALDGFIIALSLIAIVYIGFVALVQKDMKKLIAYSSIAHMGFVTLGFFL 319
Query: 145 --------GVSAYTV-----SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYK 191
VS+ V + +++H F LFL G ++ + H+++I + GG+
Sbjct: 320 VFAIFRQPEVSSGAVMGIEGGMVQMISHGFISGALFLCVG-VLYDRLHSREIADYGGVIN 378
Query: 192 YMP 194
MP
Sbjct: 379 VMP 381
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 133/301 (44%), Gaps = 39/301 (12%)
Query: 605 YLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLEL 662
Y+ E M + + ++I N ++ A IK+F+ S FML + +Y +G+
Sbjct: 138 YVFWEAMLIPMFIVIGVWGGPNRVY---ATIKFFLYTFFGSVFMLVALIYMYFQSGS--- 191
Query: 663 QSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITL 716
F+++ + + + A L+ I L+F K+ + P H W+PD + G S+I+
Sbjct: 192 ---FSILDYHALPLGMTAQILIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGSVILAA 248
Query: 717 LLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKR 772
++ ++ LP+ + L + L++ +++ A+ Q + K+
Sbjct: 249 IMLKIGGYGF--------LRFSLPITPDASAALDGFIIALSLIAIVYIGFVALVQKDMKK 300
Query: 773 MIAYSSIAHMG------LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVI 826
+IAYSSIAHMG ++F+I + ++ + G+ +I++ F F +
Sbjct: 301 LIAYSSIAHMGFVTLGFFLVFAIFRQPEVSSGAVM--GIEGGMVQMISHGFISGALFLCV 358
Query: 827 ILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET 886
+L + ++ E+ + G+ PW M+ F + AG P T GF + + F
Sbjct: 359 GVLYDRLHSR--EIADYGGVINVMPWFGGFMVFFAMANAGLPGTSGFVGELMVILAAFRA 416
Query: 887 Q 887
Sbjct: 417 D 417
>gi|261222004|ref|ZP_05936285.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
B1/94]
gi|265997968|ref|ZP_06110525.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
M490/95/1]
gi|260920588|gb|EEX87241.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
B1/94]
gi|262552436|gb|EEZ08426.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti
M490/95/1]
Length = 502
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAVFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAVFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ +F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAVFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|163868361|ref|YP_001609570.1| NADH dehydrogenase subunit M [Bartonella tribocorum CIP 105476]
gi|161018017|emb|CAK01575.1| NADH dehydrogenase I chain M [Bartonella tribocorum CIP 105476]
Length = 489
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/380 (53%), Positives = 283/380 (74%), Gaps = 7/380 (1%)
Query: 215 GFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAE 268
GF S + ++ FN I Y +G+DG+S+ FI L+AF+ IL S + +K++L
Sbjct: 56 GFDSTNPNFQMVEKFNWLGNGISYHMGVDGISILFIVLSAFLLPFCILASWENVKERLKA 115
Query: 269 YMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLM 328
YM AFL+L IIG FCALD +LFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYTL+
Sbjct: 116 YMIAFLLLEVAIIGVFCALDAILFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLL 175
Query: 329 GSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLP 388
GS+LML++++ +Y+ + + +I + Q+WL++ FF +FA+K+P+WP+HTWLP
Sbjct: 176 GSVLMLVALMAMYWQAG-TLDIPTLLNYQFPAHMQMWLWLAFFASFAVKMPMWPVHTWLP 234
Query: 389 DAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
DAHVEAPT GSVILA ++LKLG YG LRFSLP+FP AS F+ + TLSLI+IIY SL+A
Sbjct: 235 DAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPFVFTLSLIAIIYTSLVA 294
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQ 508
+VQ DIKKLIAYSSIAHMG+VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y++
Sbjct: 295 LVQSDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDR 354
Query: 509 MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLT 568
+ TR IS FGG++N +P ++V F+IF++AN LPGTSGF+GEF+ ++ + N I VL
Sbjct: 355 LHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGTSGFLGEFLTLIGVFQVNKLIVVLA 414
Query: 569 STALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 415 TTGVILSAAYALYLYRRVVF 434
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPFVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQSDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGTSGFLGE 396
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 61/358 (17%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ N + L
Sbjct: 165 ASIKFFLYTLLGSVLMLVALMAMYWQAGTLDIPTLLN----YQFPAHMQMWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ + L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 273 ADFAPFVFTLSLIAIIYTSLVALVQSDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYI 922
+ G P T GF +F +F+ K+ ++L A G I+
Sbjct: 383 ANVGLPGTSGFLGEFLTLIGVFQVNKLIVVL---------ATTGVILSAA---------- 423
Query: 923 VEAIKAARKSALIINRGSLELENLR--FEEKKYENFVFNINKASEKIITKILFNTYPS 978
A+ R+ GSL+ ENL+ + E F+ +I I F YP+
Sbjct: 424 -YALYLYRRVVF----GSLDKENLKVLIDLSSREKFILY-----PMVILIIFFGIYPT 471
>gi|344337370|ref|ZP_08768304.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiocapsa marina 5811]
gi|343802323|gb|EGV20263.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiocapsa marina 5811]
Length = 526
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/381 (53%), Positives = 282/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI FN+ Y+LG+DG+S+ I LT FIT+ +I+ D I K ++YM+AFLI+ G+
Sbjct: 65 ERAAWIPTFNVEYYLGVDGISMPLIILTTFITIFVIIAGWDVITYKPSQYMAAFLIMEGV 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+F+EA LIP+FIIIG WGG NR YA IKFFLYT GS+ ML+++IY
Sbjct: 125 MVGVFSALDAILFYVFWEAMLIPMFIIIGVWGGPNRVYATIKFFLYTFFGSVFMLVALIY 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ ++ SF+IL +H L + QI +F+ F +AFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 185 MYFQAD-SFSILDFHDLELGMTAQILIFVAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFS+PI PDAS LII LSLI+++YI +A+VQ D+KKLIA
Sbjct: 244 VILAAIMLKIGGYGFLRFSMPITPDASASLDWLIIALSLIAVVYIGFVALVQQDMKKLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F++ I I+G ++QMISH IS A+F+ +G LY+
Sbjct: 304 YSSIAHMGFVTLGFFIVFTIIRSPEVAGGAVMGIEGGMVQMISHGFISGALFLCVGVLYD 363
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ +R I+++GG+IN +P F F + F+++N LPGTSGF+GEFM+IL+ + +F L
Sbjct: 364 RVHSREIADYGGVINTMPWFGAFVVFFAMSNAGLPGTSGFVGEFMVILATFRADFWWAFL 423
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI +AA++L + K +IF
Sbjct: 424 AATTLILAAAFTLWMVKRVIF 444
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 20/211 (9%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+D L +TA + F+ + K FP+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 198 HDLELGMTAQILIFVAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGGY 256
Query: 86 MITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+ ++ +L +I+ + I ++G + ++Q D+K++IAYS+++ +G++T+G
Sbjct: 257 GFLRFSMPITPDASASLDWLIIALSLIAVVYIGFVALVQQDMKKLIAYSSIAHMGFVTLG 316
Query: 144 L---------------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
V + +++H F LFL G ++ + H+++I + GG
Sbjct: 317 FFIVFTIIRSPEVAGGAVMGIEGGMVQMISHGFISGALFLCVG-VLYDRVHSREIADYGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ MP + +S G P SGF +
Sbjct: 376 VINTMPWFGAFVVFFAMSNAGLPGTSGFVGE 406
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 125/272 (45%), Gaps = 26/272 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+F+ S FML + +Y + S F+++ +++ + A L+ + L
Sbjct: 163 ATIKFFLYTFFGSVFMLVALIYMY-----FQADS-FSILDFHDLELGMTAQILIFVAFLL 216
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G S+I+ ++ + + + I ++
Sbjct: 217 AFAVKVPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--LRFSMPITPDASASLD 274
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM------LFSIISIKTSHNN 798
W +++ L++ +++ A+ Q + K++IAYSSIAHMG + +F+II
Sbjct: 275 W--LIIALSLIAVVYIGFVALVQQDMKKLIAYSSIAHMGFVTLGFFIVFTIIRSPEVAGG 332
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
++ + G+ +I++ F F + +L + ++ E+ + G+ PW ++
Sbjct: 333 AVM--GIEGGMVQMISHGFISGALFLCVGVLYDRVHSR--EIADYGGVINTMPWFGAFVV 388
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
F S AG P T GF +F + F W
Sbjct: 389 FFAMSNAGLPGTSGFVGEFMVILATFRADFWW 420
>gi|374622773|ref|ZP_09695294.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Ectothiorhodospira sp. PHS-1]
gi|373941895|gb|EHQ52440.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Ectothiorhodospira sp. PHS-1]
Length = 504
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/401 (51%), Positives = 294/401 (73%), Gaps = 20/401 (4%)
Query: 207 LVGAPFFSGFYSKDKKK------IWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
LV P F+ F + WI FNI+Y LG+DG+S+ I LT FIT+++++ +
Sbjct: 46 LVSIPLFTQFDRGTHEMQFVEMIPWISTFNIHYHLGVDGISMPLILLTTFITVLVVIAAW 105
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ I+ ++++Y++AFLI+ GL+ G F ALD +LFY+FFEA LIP+F++IG WGG NR YA
Sbjct: 106 EVIQHRVSQYLAAFLIMEGLMNGVFSALDAVLFYVFFEAMLIPMFLVIGIWGGPNRIYAT 165
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
+KFFLYT +GS+ +LI +IYLY + SF+IL +H L + Q+ +F+ +AF +KIP
Sbjct: 166 LKFFLYTFLGSVFLLIGLIYLY-TQSGSFSILDFHHLPLGMTAQMLIFLGMLLAFGVKIP 224
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
++P+HTWLPDAHVEAPT GSVILAAIMLK+G YG LRFSLPI PDA+ L++TLSLI
Sbjct: 225 MFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGFLRFSLPIAPDAAMALDWLMVTLSLI 284
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML------------TKISIQGAIIQ 487
+++YI L+A++Q D+KKL+AYSSIAHMGFVTLG F++ + I G ++Q
Sbjct: 285 AVVYIGLVALMQQDMKKLVAYSSIAHMGFVTLGFFIVFMIYNNTGSWQGAALGISGGMVQ 344
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MISH LIS+AMF+ +G LY++M +R I+++GG+ N +P F+ FF++F++AN LPGTSGF
Sbjct: 345 MISHGLISAAMFLCVGVLYDRMHSRRIADYGGVANTMPWFAAFFVLFAMANTGLPGTSGF 404
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+IL+A + +F I +L +T LI +AAY+L L K +++
Sbjct: 405 VGEFMVILAAFRADFWIALLAATTLILAAAYTLWLVKRVVY 445
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 26/211 (12%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL +TA + FL + K FP+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 202 PLGMTAQMLIFLGMLLAFGVKIPMFPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGGYGFL 260
Query: 89 RMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--- 143
R S P+ + AL +++ + I ++GL+ ++Q D+K+++AYS+++ +G++T+G
Sbjct: 261 RFSLPIAPDAAMALDWLMVTLSLIAVVYIGLVALMQQDMKKLVAYSSIAHMGFVTLGFFI 320
Query: 144 ---------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
LG+S V +++H A +FL G ++ + H++ I + GG
Sbjct: 321 VFMIYNNTGSWQGAALGISGGMV---QMISHGLISAAMFLCVG-VLYDRMHSRRIADYGG 376
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ MP ++ ++ G P SGF +
Sbjct: 377 VANTMPWFAAFFVLFAMANTGLPGTSGFVGE 407
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 134/288 (46%), Gaps = 25/288 (8%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N I+ A +K+F+ L S F+L G+ LY +G+ F+++
Sbjct: 146 LIPMFLVIGIWGGPNRIY---ATLKFFLYTFLGSVFLLIGLIYLYTQSGS------FSIL 196
Query: 670 KLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPK 723
+++ + A L+ + + L+F K+ + P H W+PD + G S+I+ ++
Sbjct: 197 DFHHLPLGMTAQMLIFLGMLLAFGVKIPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGG 256
Query: 724 LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG 783
+ + L I + ++W +++ L++ +++ + A+ Q + K+++AYSSIAHMG
Sbjct: 257 YGF--LRFSLPIAPDAAMALDW--LMVTLSLIAVVYIGLVALMQQDMKKLVAYSSIAHMG 312
Query: 784 LMLFSIISIKTSHNNLIIFNSC----DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE 839
+ + +NN + G+ +I++ F + +L + ++
Sbjct: 313 FVTLGFFIVFMIYNNTGSWQGAALGISGGMVQMISHGLISAAMFLCVGVLYDRMHSR--R 370
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ + G+ PW A ++F + G P T GF +F + F
Sbjct: 371 IADYGGVANTMPWFAAFFVLFAMANTGLPGTSGFVGEFMVILAAFRAD 418
>gi|319405686|emb|CBI79309.1| NADH dehydrogenase I chain M [Bartonella sp. AR 15-3]
Length = 489
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/360 (55%), Positives = 274/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +GIDG+S+ F+ L+AF+ IL S + I+ +L +YM AFL+L IIG FCALD
Sbjct: 76 GISYHMGIDGISVLFVVLSAFLLPFCILASWNTIQDRLKDYMVAFLLLEVAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFYIFFE +LIP+FIIIG WGG R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 AILFYIFFEGSLIPMFIIIGVWGGVRRVYASMKFFLYTLLGSVLMLVAIMVMYW-EAGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + T QIWL++ FF +FA+K+P+WP HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 195 DIPTLLTYQFTTHMQIWLWLAFFASFAVKMPMWPFHTWLPDAHVEAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS FS+L+ TLSLI+IIY SL+A+VQ DIKKLIAYSS+AHMG+
Sbjct: 255 LGGYGFIRFSLPMFPIASADFSSLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSVAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + IQGAI QM+SH ++S+A+F+ +G +YN++ TR IS FGG++N +P ++
Sbjct: 315 VTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGIIYNRLHTREISAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGFIGEF+ ++ + N + V +T +I SAAY+L L + ++F
Sbjct: 375 VVFLIFTMANVGLPGSSGFIGEFLTLIGVFQANKFVAVFATTGVILSAAYALYLYRRVVF 434
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ S ++F
Sbjct: 223 KMPMWPFHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFIRFSLPMFPIASADFSSLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQNDIKKLIAYSSVAHMGYVTMGIFSANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G II N H ++I GGL MP + LI ++ VG P SGF
Sbjct: 339 IVSAALFLCVG-IIYNRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGF 393
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 30/266 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I ++Y GTL++ ++ ++ + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMVMYWEAGTLDIPTLLTYQFTTHMQIWLW----LAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + PFH W+PD + A +++L+ ++ +L I+ LP+
Sbjct: 221 AVKMPMWPFHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFIRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG + I S I+
Sbjct: 273 ADFSSLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSVAHMGYVTMGIFSANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + +F +G ++ N T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGI--VSAALFLCVG------IIYNRL--HTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQK 888
+ G P + GF +F +F+ K
Sbjct: 383 ANVGLPGSSGFIGEFLTLIGVFQANK 408
>gi|253996961|ref|YP_003049025.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylotenera mobilis JLW8]
gi|253983640|gb|ACT48498.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylotenera mobilis JLW8]
Length = 499
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/378 (53%), Positives = 291/378 (76%), Gaps = 2/378 (0%)
Query: 212 FFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYM 270
F G + ++ +WI FNI+Y LG DG+++ I LT+F T+I+++ + + I+K++A+YM
Sbjct: 60 FADGGFQFQERFLWIMSFNIHYHLGADGIAIPLILLTSFTTVIVVISAWEVIEKRVAQYM 119
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
++FLI+SGL+IG F LD +L+Y+F+EA LIP+F++IG WGG NR YA +KFFLYTL+GS
Sbjct: 120 ASFLIMSGLMIGVFSTLDAILYYVFWEAMLIPMFLVIGIWGGPNRVYATVKFFLYTLLGS 179
Query: 331 LLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
LLML++ IY+++ SF I ++QL + Q+ +F+ FF AFA+KIP+WP+HTWLPDA
Sbjct: 180 LLMLVAFIYMFH-QTGSFAISDYYQLPLPLNVQVLIFLAFFAAFAVKIPMWPVHTWLPDA 238
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
HVEAPT GSV+LAAI LKLG Y LRF++PI PDA++Y S +ITLSLI+I+YI+L+A+V
Sbjct: 239 HVEAPTGGSVVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITLSLIAIVYIALVALV 298
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q D+KKLIAYSSI+HMGFVTLG F+ + ++GA++QMISH ISSAMF+ +G LY+++
Sbjct: 299 QKDMKKLIAYSSISHMGFVTLGFFIFNNLGLEGAVVQMISHGFISSAMFLCVGVLYDRVH 358
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
+R I +GG+ N +P F+ F ++F++AN LPGTSGF+GEFM+IL A++ NF L S
Sbjct: 359 SRQIDAYGGVANTMPAFAAFAVLFAMANSGLPGTSGFVGEFMVILGAIQVNFWYAFLASF 418
Query: 571 ALIFSAAYSLCLSKNIIF 588
LIF AAY+L + K + +
Sbjct: 419 TLIFGAAYTLWMVKRVFY 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 103/202 (50%), Gaps = 12/202 (5%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y PL + + FL K +P+HTWLPD+ +E PT S ++ A + G
Sbjct: 201 YYQLPLPLNVQVLIFLAFFAAFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAAIALKLGGY 260
Query: 85 FMITRMSPLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
+ P+ + LS ++ + I ++ L+ ++Q D+K++IAYS++S +G++T+G
Sbjct: 261 SFLRFAMPIAPDAAHYLSGFMITLSLIAIVYIALVALVQKDMKKLIAYSSISHMGFVTLG 320
Query: 144 ------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITC 197
LG+ ++ +++H F + +FL G ++ + H++ I GG+ MP
Sbjct: 321 FFIFNNLGLEG---AVVQMISHGFISSAMFLCVG-VLYDRVHSRQIDAYGGVANTMPAFA 376
Query: 198 ITSLIGLLSLVGAPFFSGFYSK 219
+++ ++ G P SGF +
Sbjct: 377 AFAVLFAMANSGLPGTSGFVGE 398
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 125/276 (45%), Gaps = 29/276 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ A +K+F+ +L S ML ++ TG+ + + +
Sbjct: 149 LIPMFLVIGIWGGPNRVY---ATVKFFLYTLLGSLLMLVAFIYMFHQTGSFAISDYYQLP 205
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
N+ + V K+ + P H W+PD + A +++L+ ++L +
Sbjct: 206 LPLNVQVLIFLAFFAAFAV----KIPMWPVHTWLPDAHVEAPTGGSVVLAA---IALKLG 258
Query: 730 IYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
Y L + +P+ + L + L++ +++ + A+ Q + K++IAYSSI+HMG +
Sbjct: 259 GYSFL-RFAMPIAPDAAHYLSGFMITLSLIAIVYIALVALVQKDMKKLIAYSSISHMGFV 317
Query: 786 LFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
IFN+ + + +I++ F F + +L + ++ ++D +
Sbjct: 318 TL----------GFFIFNNLGLEGAVVQMISHGFISSAMFLCVGVLYDRVHSR--QIDAY 365
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A ++F + +G P T GF +F +
Sbjct: 366 GGVANTMPAFAAFAVLFAMANSGLPGTSGFVGEFMV 401
>gi|386815630|ref|ZP_10102848.1| NADH dehydrogenase subunit M [Thiothrix nivea DSM 5205]
gi|386420206|gb|EIJ34041.1| NADH dehydrogenase subunit M [Thiothrix nivea DSM 5205]
Length = 514
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/404 (49%), Positives = 283/404 (70%), Gaps = 23/404 (5%)
Query: 207 LVGAPFFSGFYSKDKKK------IWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL 260
L+ P ++GF S W++ FNI Y LG+DG+S+ I L FIT+++++
Sbjct: 43 LLSIPLYTGFDSTTAAMQFGELMPWVEAFNINYSLGVDGISMPLILLNTFITVLVVIAGW 102
Query: 261 D-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAA 319
+ IK ++++Y++AFLI+ GL+ G F +LD MLFYIFFE LIP+F+IIG WGG R YA+
Sbjct: 103 EVIKYRISQYLAAFLIMEGLVNGVFASLDAMLFYIFFEGMLIPLFLIIGIWGGPRRVYAS 162
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
+KFFLYT GS+ +LIS+IY+Y + SF + H L I + QI +F++F +AF +K+P
Sbjct: 163 LKFFLYTFFGSVFLLISLIYMYQLGG-SFAVADLHVLKIDMLPQILIFLSFLLAFGVKVP 221
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHVEAPT GSVILAAI LK+G Y LRF++PI PDA+ + L+I +SL
Sbjct: 222 MWPVHTWLPDAHVEAPTGGSVILAAITLKVGGYAFLRFAMPIVPDAAEHLDWLVIFMSLT 281
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI---------------SIQGA 484
+++YI +A+VQ D+KKL+AYSSIAHMGFVTLG F + I ++QG
Sbjct: 282 AVVYIGFVALVQQDMKKLVAYSSIAHMGFVTLGFFAVYMIALKAQDSASMNSAVLAVQGG 341
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
++QM+SH IS AMF+ IG LY++M TR I+ +GG+ N +P F+ F+++F++AN LPGT
Sbjct: 342 MVQMVSHGFISGAMFLCIGVLYDRMHTRDINAYGGVANKMPVFAAFYVLFAMANTGLPGT 401
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
SGF+GEFM+IL++ + + I L +T LI AAY+L L K IIF
Sbjct: 402 SGFVGEFMVILASFRADPWIAFLAATTLIVGAAYTLWLVKRIIF 445
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 93/190 (48%), Gaps = 21/190 (11%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K +P+HTWLPD+ +E PT S ++ A T+ G + P+ + L +++F+
Sbjct: 219 KVPMWPVHTWLPDAHVEAPTGGSVILAAITLKVGGYAFLRFAMPIVPDAAEHLDWLVIFM 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------------------GVSAY 149
++G + ++Q D+K+++AYS+++ +G++T+G V A
Sbjct: 279 SLTAVVYIGFVALVQQDMKKLVAYSSIAHMGFVTLGFFAVYMIALKAQDSASMNSAVLAV 338
Query: 150 TVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
+ +++H F +FL G ++ + H +DI GG+ MP+ ++ ++ G
Sbjct: 339 QGGMVQMVSHGFISGAMFLCIG-VLYDRMHTRDINAYGGVANKMPVFAAFYVLFAMANTG 397
Query: 210 APFFSGFYSK 219
P SGF +
Sbjct: 398 LPGTSGFVGE 407
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 135/285 (47%), Gaps = 22/285 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ S F+L + +Y + G+ + + +V+K++ + ++ LS LL
Sbjct: 161 ASLKFFLYTFFGSVFLLISLIYMYQLGGSFAVADL-HVLKIDMLPQILIFLSFLL---AF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILL 750
K+ + P H W+PD + A +++L+ ++L V Y L + +P+V + + L
Sbjct: 217 GVKVPMWPVHTWLPDAHVEAPTGGSVILAA---ITLKVGGYAFL-RFAMPIVPDAAEHLD 272
Query: 751 ILAIF----SLIIGNVSAITQYNFKRMIAYSSIAHMG---LMLFSIISIKTSHNNLIIFN 803
L IF +++ A+ Q + K+++AYSSIAHMG L F++ I + N
Sbjct: 273 WLVIFMSLTAVVYIGFVALVQQDMKKLVAYSSIAHMGFVTLGFFAVYMIALKAQDSASMN 332
Query: 804 SC----DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
S G+ ++++ F F I +L + T +++ + G+ + P A ++
Sbjct: 333 SAVLAVQGGMVQMVSHGFISGAMFLCIGVLYDRM--HTRDINAYGGVANKMPVFAAFYVL 390
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
F + G P T GF +F + F W+ L ++GA
Sbjct: 391 FAMANTGLPGTSGFVGEFMVILASFRADP-WIAFLAATTLIVGAA 434
>gi|262277289|ref|ZP_06055082.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit
m) (ndh-1 subunit m) [alpha proteobacterium HIMB114]
gi|262224392|gb|EEY74851.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit
m) (ndh-1 subunit m) [alpha proteobacterium HIMB114]
Length = 499
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 281/369 (76%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI F + Y +GIDG+SL FI LT FIT I IL +++ +KK+L E++ A L++ +
Sbjct: 68 EQHDWIFNF-VNYKVGIDGISLSFILLTTFITPICILATINSVKKRLREFLIALLLMETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FC+LD +FY+FFEA LIP+F+IIG WGG R Y+A KFFLYTL GS+ MLIS+IY
Sbjct: 127 MIGVFCSLDLFIFYLFFEAGLIPMFLIIGIWGGEKRVYSAFKFFLYTLFGSIFMLISIIY 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + ++ + I K Q +L++ FF +FA+K P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 IYFDAG-TLDVEKLLNIQINKDYQKYLWLGFFASFAVKTPMWPVHTWLPDAHVEAPTSGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+ YG +RFSL +FPDAS YF+ L+ LS+I+IIY SL+A+VQ D+KKLIA
Sbjct: 246 VILAAILLKMAGYGFIRFSLGLFPDASVYFAPLVFALSIIAIIYTSLVALVQKDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF+ K I+G+I QMISH +ISSA+F+ +G +Y++M TR IS +GG
Sbjct: 306 YSSVAHMGFVTIGIFVFNKQGIEGSIFQMISHGIISSALFLCVGVVYDRMHTREISEYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N++P ++V F++F+L + LPGTSGF+GE ++++ + K+N+ I +T +I SA YS
Sbjct: 366 VVNIMPKYAVMFMVFTLGSLGLPGTSGFVGEILVLIGSFKYNYWIAFFAATGVILSACYS 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRRVVF 434
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 13/192 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K+ +P+HTWLPD+ +E PT S ++ A + AG I LF ++ + ++F
Sbjct: 223 KTPMWPVHTWLPDAHVEAPTSGSVILAAILLKMAGYGFIRFSLGLFPDASVYFAPLVFAL 282
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFKA 164
+I A + L+ ++Q D+K++IAYS+++ +G++T+G+ V SIF +++H +
Sbjct: 283 SIIAIIYTSLVALVQKDMKKLIAYSSVAHMGFVTIGIFVFNKQGIEGSIFQMISHGIISS 342
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD---- 220
LFL G ++ + H ++I GG+ MP + ++ L +G P SGF +
Sbjct: 343 ALFLCVG-VVYDRMHTREISEYGGVVNIMPKYAVMFMVFTLGSLGLPGTSGFVGEILVLI 401
Query: 221 ---KKKIWIDYF 229
K WI +F
Sbjct: 402 GSFKYNYWIAFF 413
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 29/284 (10%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L YL E L+ + L + I + ++S A K+F+ + S FML I +Y
Sbjct: 135 DLFIFYLFFEAGLIPMFLIIGIWGGEKRVYS---AFKFFLYTLFGSIFMLISIIYIYFDA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
GTL+++ + N I++N L L + K + P H W+PD + G+ I
Sbjct: 192 GTLDVEKLLN-IQINKDYQKYLWLGFF---ASFAVKTPMWPVHTWLPDAHVEAPTSGSVI 247
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+ +LL K++ + I R + + + ++ L+I ++I ++ A+ Q + K+
Sbjct: 248 LAAILL----KMAGYGFI-RFSLGLFPDASVYFAPLVFALSIIAIIYTSLVALVQKDMKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHMG + I IF G+ I + +F +G
Sbjct: 303 LIAYSSVAHMGFVTIGIFVFNKQGIEGSIFQMISHGI--ISSALFLCVGVV--------Y 352
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
T E+ + G+ P A++ M+F G P T GF +
Sbjct: 353 DRMHTREISEYGGVVNIMPKYAVMFMVFTLGSLGLPGTSGFVGE 396
>gi|395789873|ref|ZP_10469381.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella taylorii 8TBB]
gi|395428095|gb|EJF94177.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella taylorii 8TBB]
Length = 498
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/382 (52%), Positives = 284/382 (74%), Gaps = 7/382 (1%)
Query: 213 FSGFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
++GF + + ++ FN I+Y +GIDG+S+ F+ L+AF+ +L S + IK +L
Sbjct: 63 WAGFDNTNPSFQMVEKFNWLGSGIHYHMGIDGISVLFVVLSAFLLPFCVLASWENIKDRL 122
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
YM AFL+L +IG FCALD MLFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYT
Sbjct: 123 KAYMIAFLLLEVAVIGVFCALDAMLFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYT 182
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML++++ +Y+ + +I + Q+WL++ FF +FA+K+P+WP+HTW
Sbjct: 183 LLGSVLMLVALMAMYW-KVGTLDIPTLLNYQFPAHMQMWLWLAFFASFAVKMPMWPVHTW 241
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSVILA ++LKLG YG LRFSLP+FP AS F+ L+ TLSLI+IIY SL
Sbjct: 242 LPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFTLSLIAIIYTSL 301
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
IA+VQ DIKKLIAYSSIAHMG+VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y
Sbjct: 302 IALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGIIY 361
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TR IS FGG++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N + V
Sbjct: 362 DRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLVGVFQVNKLVVV 421
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 422 FATTGVILSAAYALYLYRRVVF 443
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 291 LSLIAIIYTSLIALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G II + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 348 IVSAALFLCVG-IIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 405
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 122/267 (45%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ N + L
Sbjct: 174 ASIKFFLYTLLGSVLMLVALMAMYWKVGTLDIPTLLN----YQFPAHMQMWLWLAFFASF 229
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 281
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 282 ADFAPLVFTLSLIAIIYTSLIALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIY 341
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + +F +G II + + T E+ F GL P A++ +IF
Sbjct: 342 QMLSHGI--VSAALFLCVG----IIYDRLH----TREISAFGGLVNNMPKYAVVFLIFTM 391
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P + GF +F +F+ K+
Sbjct: 392 ANVGLPGSSGFLGEFLTLVGVFQVNKL 418
>gi|307942131|ref|ZP_07657482.1| NADH-quinone oxidoreductase subunit m [Roseibium sp. TrichSKD4]
gi|307774417|gb|EFO33627.1| NADH-quinone oxidoreductase subunit m [Roseibium sp. TrichSKD4]
Length = 506
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 274/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
NI Y +G+DG+S+ F+ LT F+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 NINYKMGVDGISVLFVILTTFLMPFCILASWESVQKRVREYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFYIFFEA LIP+F+IIG WGG+ R YA+ KFFLYTL+GS+LMLI+++ +Y+ +
Sbjct: 136 LVLFYIFFEAGLIPMFLIIGVWGGARRVYASYKFFLYTLLGSVLMLIAIMAMYWEVGTT- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + S Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 DIPALMDHSFPGGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ L+ TLS+I+I+Y SL+A+ Q DIKKLIAYSS+AHMG+
Sbjct: 255 LGGYGFLRFSLPMFPLASDMFAPLVFTLSVIAIVYTSLVALAQEDIKKLIAYSSVAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF +T IQG + QM+SH ++S A+F+ +G +Y++M TR IS +GG++N +P ++
Sbjct: 315 VTMGIFTMTPQGIQGGVFQMLSHGIVSGALFLCVGVIYDRMHTREISAYGGLVNRMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGF+GE + ++ A + N + V+ ++ +I SAAY+L L + ++F
Sbjct: 375 VAFLIFTMANVGLPGTSGFVGEILTLMGAFQVNTWVAVIATSGVILSAAYALYLYRRVVF 434
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASDMFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q DIK++IAYS+++ +GY+T+G+ G+ +F +++H
Sbjct: 282 LSVIAIVYTSLVALAQEDIKKLIAYSSVAHMGYVTMGIFTMTPQGIQG---GVFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREISAYGGLVNRMPKYAVAFLIFTMANVGLPGTSGFVGE 396
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 114/262 (43%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I +Y GT ++ ++ + ++ + L
Sbjct: 165 ASYKFFLYTLLGSVLMLIAIMAMYWEVGTTDIPALMD----HSFPGGMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGA----SII---ITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + A S+I I L L L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDMFAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ +++ ++ A+ Q + K++IAYSS+AHMG + I ++ +F
Sbjct: 281 T-------LSVIAIVYTSLVALAQEDIKKLIAYSSVAHMGYVTMGIFTMTPQGIQGGVFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+ + GA + + + + + T E+ + GL R P A+ +IF +
Sbjct: 334 MLSHGI---------VSGALFLCVGVIYDRMH-TREISAYGGLVNRMPKYAVAFLIFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF + F+
Sbjct: 384 NVGLPGTSGFVGEILTLMGAFQ 405
>gi|265994755|ref|ZP_06107312.1| proton-translocating NADH-quinone oxidoreductase [Brucella
melitensis bv. 3 str. Ether]
gi|262765868|gb|EEZ11657.1| proton-translocating NADH-quinone oxidoreductase [Brucella
melitensis bv. 3 str. Ether]
Length = 502
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 272/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYAFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|292493656|ref|YP_003529095.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Nitrosococcus halophilus Nc4]
gi|291582251|gb|ADE16708.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Nitrosococcus halophilus Nc4]
Length = 504
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 284/382 (74%), Gaps = 14/382 (3%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
+K WI+ F +YY LG+DG+S+ I LT F T+++++ I+ KL +YM+AFLI+ G
Sbjct: 64 QEKAAWIEIFKVYYHLGVDGISMPLIILTTFSTVLVVIAGWQVIQHKLGQYMAAFLIMEG 123
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L+ G F ALD +LFY+FFE LIP+F+IIG WGG NR YA +KFFLYT +GS+ +L++++
Sbjct: 124 LMNGVFAALDAVLFYVFFEGMLIPLFLIIGIWGGPNRIYATLKFFLYTFLGSVFLLLALL 183
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YL I++ F+IL +HQ + Q+ LF+ F +AFA+K+P+WP+HTWLPDAHVEAPT G
Sbjct: 184 YLRSITD-GFSILEFHQAPLGMQAQVALFLAFLLAFAVKVPMWPVHTWLPDAHVEAPTGG 242
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILAAI LK+G YG +RFSLPI PDAS + LIITLSLI+++YI L+AMVQ D+KKLI
Sbjct: 243 SVILAAITLKIGAYGFMRFSLPIAPDASLALNWLIITLSLIAVVYIGLVAMVQEDLKKLI 302
Query: 459 AYSSIAHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLY 506
AYSSIAHMGFVTLG+F+ + ++GA++QMISH L+S+AMF+ +G LY
Sbjct: 303 AYSSIAHMGFVTLGLFIAFVIFARGVEGEGAVMGLEGALVQMISHGLVSAAMFLCVGVLY 362
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++M TR+I ++GG++N +P F+ F ++FS+AN LPGTSGF+GEF++IL A + +F
Sbjct: 363 DRMHTRMIKDYGGVVNTMPVFASFMVLFSMANAGLPGTSGFVGEFLVILGAFQADFWYAF 422
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
L S LI AAYSL + K ++F
Sbjct: 423 LASMTLILGAAYSLWMVKRVVF 444
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 110/211 (52%), Gaps = 20/211 (9%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+ PL + A + FL + K +P+HTWLPD+ +E PT S ++ A T+ G +
Sbjct: 198 HQAPLGMQAQVALFLAFLLAFAVKVPMWPVHTWLPDAHVEAPTGGSVILAAITL-KIGAY 256
Query: 86 MITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+ ++ AL+ +I+ + I ++GL+ ++Q D+K++IAYS+++ +G++T+G
Sbjct: 257 GFMRFSLPIAPDASLALNWLIITLSLIAVVYIGLVAMVQEDLKKLIAYSSIAHMGFVTLG 316
Query: 144 L---------------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
L V ++ +++H A +FL G ++ + H + I++ GG
Sbjct: 317 LFIAFVIFARGVEGEGAVMGLEGALVQMISHGLVSAAMFLCVG-VLYDRMHTRMIKDYGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ MP+ ++ ++ G P SGF +
Sbjct: 376 VVNTMPVFASFMVLFSMANAGLPGTSGFVGE 406
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 21/223 (9%)
Query: 693 KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVII-YRLLIKCLLPLVINWQK 747
K+ + P H W+PD + G S+I L + T K+ + + + L I L +NW
Sbjct: 221 KVPMWPVHTWLPDAHVEAPTGGSVI---LAAITLKIGAYGFMRFSLPIAPDASLALNW-- 275
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLML------FSIISIKTSHNNLII 801
+++ L++ +++ + A+ Q + K++IAYSSIAHMG + F I + ++
Sbjct: 276 LIITLSLIAVVYIGLVAMVQEDLKKLIAYSSIAHMGFVTLGLFIAFVIFARGVEGEGAVM 335
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ L +I++ F + +L + T + + G+ P A M++F
Sbjct: 336 --GLEGALVQMISHGLVSAAMFLCVGVLYDRM--HTRMIKDYGGVVNTMPVFASFMVLFS 391
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ W L M ++GA
Sbjct: 392 MANAGLPGTSGFVGEFLVILGAFQAD-FWYAFLASMTLILGAA 433
>gi|319898894|ref|YP_004158987.1| NADH dehydrogenase I subunit M [Bartonella clarridgeiae 73]
gi|319402858|emb|CBI76409.1| NADH dehydrogenase I chain M [Bartonella clarridgeiae 73]
Length = 489
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/360 (55%), Positives = 275/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
+I Y +GIDG+S+ F+ L+AF+ IL S + I+ +L +YM AFL+L IIG FCALD
Sbjct: 76 DISYHMGIDGISVLFVVLSAFLLPFCILASWNTIQDRLKDYMIAFLLLEVAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFYIFFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 AILFYIFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMAMYW-EAGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + T QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 DIPTLLTHQFTTHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ L+ TLSLISIIY SL+A+VQ DIKKLIAYSS+AHMG+
Sbjct: 255 LGGYGFIRFSLPMFPIASADFAPLVFTLSLISIIYTSLVALVQNDIKKLIAYSSVAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
V +GIF + IQGAI QM+SH +IS+A+F+ +G +YN++ TR IS FGG++N +P ++
Sbjct: 315 VMMGIFSANEQGIQGAIYQMLSHGIISAALFLCVGVIYNRLHTREISAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGFIGEF+ ++ + N I V +T ++ SAAY+L L + IIF
Sbjct: 375 VVFLIFTMANIGLPGSSGFIGEFLTLIGVFQINKFIAVFATTGVVLSAAYALYLYRRIIF 434
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPIASADFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I+ + L+ ++QNDIK++IAYS+++ +GY+ +G+ G+ +I+ +++H
Sbjct: 282 LSLISIIYTSLVALVQNDIKKLIAYSSVAHMGYVMMGIFSANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G +I N H ++I GGL MP + LI ++ +G P SGF
Sbjct: 339 IISAALFLCVG-VIYNRLHTREISAFGGLVNNMPKYAVVFLIFTMANIGLPGSSGF 393
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 30/266 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GTL++ ++ + + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMAMYWEAGTLDIPTLLT----HQFTTHMQIWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ S+I ++ A+ Q + K++IAYSS+AHMG ++ I S I+
Sbjct: 273 ADFAPLVFTLSLISIIYTSLVALVQNDIKKLIAYSSVAHMGYVMMGIFSANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ I +F +G ++ N T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGI--ISAALFLCVG------VIYNRL--HTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQK 888
+ G P + GF +F +F+ K
Sbjct: 383 ANIGLPGSSGFIGEFLTLIGVFQINK 408
>gi|390449273|ref|ZP_10234882.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor
aquibiodomus RA22]
gi|389664378|gb|EIM75873.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor
aquibiodomus RA22]
Length = 504
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/410 (49%), Positives = 293/410 (71%), Gaps = 8/410 (1%)
Query: 180 NQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDG 239
++IRN+ L T T ++ L +G + + +K+ W+ I Y +G+DG
Sbjct: 32 RRNIRNVALL-----TTVFTFVLSLFIWIGFDASTPGFQMVEKQEWLGS-GISYHMGVDG 85
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+S+ F+ LT F+ + +L S + ++ ++ EYM AFLIL L+IG FCALD +LFY+FFEA
Sbjct: 86 ISMLFVILTTFLMPLCVLASWEAVEHRVKEYMIAFLILETLMIGVFCALDIVLFYVFFEA 145
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
LIP+FIIIG WGG R YA+ KFFLYTL+GS+LML++M+ +Y+ + + +I +
Sbjct: 146 GLIPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAMMAMYWQAGTT-DIPTLLTHVF 204
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
+ Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G YG LRFS
Sbjct: 205 PEGMQYWLWVAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRFS 264
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LP+FP AS + L+ TLS+I+IIY SL+A++Q DIKKLIAYSS+AHMGFVT+GIF + +
Sbjct: 265 LPMFPVASIDLAPLVFTLSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAINE 324
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
+QGAI QM+SH L+S A+F+ +G +Y++M TR I+ +GG++N +P ++ F+IF++AN
Sbjct: 325 QGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMPKYATVFMIFTMAN 384
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEF+ +LS K N + + +T +I SA Y+L L + ++F
Sbjct: 385 VGLPGTSGFVGEFLTLLSVFKVNTWVALFATTGVILSAGYALWLYRRVVF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 21/210 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ L+ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPVASIDLAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAINEQGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFY--- 217
LFL G +I + H ++I GGL MP +I ++ VG P SGF
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREIAAYGGLVNNMPKYATVFMIFTMANVGLPGTSGFVGEF 397
Query: 218 ----SKDKKKIWIDYFNIYYFLGIDGLSLW 243
S K W+ F + G +LW
Sbjct: 398 LTLLSVFKVNTWVALFATTGVILSAGYALW 427
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 121/271 (44%), Gaps = 31/271 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ ++ + + + +
Sbjct: 165 ASFKFFLYTLLGSVLMLLAMMAMYWQAGTTDIPTLLTHVFPEGMQYWLW----VAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFLRFSLPMFPVAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
I+ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG + I +I IF
Sbjct: 273 IDLAPLVFTLSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAINEQGVQGAIF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL + GA + + + + + T E+ + GL P A + MIF
Sbjct: 333 QMLSHGL---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNNMPKYATVFMIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F+ W+ L
Sbjct: 383 ANVGLPGTSGFVGEFLTLLSVFKVNT-WVAL 412
>gi|62289763|ref|YP_221556.1| NADH dehydrogenase subunit M [Brucella abortus bv. 1 str. 9-941]
gi|82699691|ref|YP_414265.1| NADH dehydrogenase subunit M [Brucella melitensis biovar Abortus
2308]
gi|189024008|ref|YP_001934776.1| NADH dehydrogenase subunit M [Brucella abortus S19]
gi|237815250|ref|ZP_04594248.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus str. 2308 A]
gi|260545487|ref|ZP_05821228.1| NADH-ubiquinone oxidoreductase [Brucella abortus NCTC 8038]
gi|260754568|ref|ZP_05866916.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 6 str. 870]
gi|260757789|ref|ZP_05870137.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 4 str. 292]
gi|260761614|ref|ZP_05873957.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 2 str. 86/8/59]
gi|260883595|ref|ZP_05895209.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 9 str. C68]
gi|297248168|ref|ZP_06931886.1| NADH dehydrogenase I subunit M [Brucella abortus bv. 5 str. B3196]
gi|376273458|ref|YP_005152036.1| NADH dehydrogenase I subunit M [Brucella abortus A13334]
gi|423167061|ref|ZP_17153764.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI435a]
gi|423170563|ref|ZP_17157238.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI474]
gi|423173356|ref|ZP_17160027.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI486]
gi|423177358|ref|ZP_17164004.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI488]
gi|423179994|ref|ZP_17166635.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI010]
gi|423183126|ref|ZP_17169763.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI016]
gi|423185932|ref|ZP_17172546.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI021]
gi|423189072|ref|ZP_17175682.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI259]
gi|62195895|gb|AAX74195.1| NuoM, NADH dehydrogenase I, M subunit [Brucella abortus bv. 1 str.
9-941]
gi|82615792|emb|CAJ10790.1| NADH/Ubiquinone/plastoquinone (complex I):NADH-ubiquinone
oxidoreductase, chain 4 [Brucella melitensis biovar
Abortus 2308]
gi|189019580|gb|ACD72302.1| NADH-ubiquinone oxidoreductase, chain 4 [Brucella abortus S19]
gi|237790087|gb|EEP64297.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus str. 2308 A]
gi|260096894|gb|EEW80769.1| NADH-ubiquinone oxidoreductase [Brucella abortus NCTC 8038]
gi|260668107|gb|EEX55047.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 4 str. 292]
gi|260672046|gb|EEX58867.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 2 str. 86/8/59]
gi|260674676|gb|EEX61497.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 6 str. 870]
gi|260873123|gb|EEX80192.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus
bv. 9 str. C68]
gi|297175337|gb|EFH34684.1| NADH dehydrogenase I subunit M [Brucella abortus bv. 5 str. B3196]
gi|363401064|gb|AEW18034.1| NADH dehydrogenase I subunit M [Brucella abortus A13334]
gi|374540611|gb|EHR12111.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI474]
gi|374541949|gb|EHR13439.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI435a]
gi|374542685|gb|EHR14172.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI486]
gi|374549839|gb|EHR21281.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI010]
gi|374550358|gb|EHR21797.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI016]
gi|374550642|gb|EHR22078.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI488]
gi|374558730|gb|EHR30123.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI259]
gi|374559320|gb|EHR30708.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella
abortus bv. 1 str. NI021]
Length = 502
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AH+ +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHIAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHIAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AH+ + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHIAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|319407255|emb|CBI80894.1| NADH dehydrogenase I chain M [Bartonella sp. 1-1C]
Length = 489
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/360 (54%), Positives = 274/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +GIDG+S+ F+ L+AF+ IL S D I+ +L +YM AFL+L IIG FCALD
Sbjct: 76 GISYHVGIDGISVLFVVLSAFLLPFCILASWDAIQDRLKDYMIAFLLLEIAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFYIFFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 AILFYIFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMVMYW-EAGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 195 DIPTLLTYQFNTHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F++L+ TLSLI+IIY SL+A+VQ DIKKLIAYSS+AHMG+
Sbjct: 255 LGGYGFIRFSLPMFPIASADFASLVFTLSLIAIIYTSLVALVQSDIKKLIAYSSVAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + IQGAI QM+SH ++S+A+F+ +G +YN++ TR IS FGG++N +P ++
Sbjct: 315 VTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGVIYNRLHTREISAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGFIGEF+ ++ + N + V +T +I SAAY+L L + I+F
Sbjct: 375 VVFLIFTMANIGLPGSSGFIGEFLTLIGVFQVNKLVAVFATTGVILSAAYALYLYRRIVF 434
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFIRFSLPMFPIASADFASLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQSDIKKLIAYSSVAHMGYVTMGIFSANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G +I N H ++I GGL MP + LI ++ +G P SGF
Sbjct: 339 IVSAALFLCVG-VIYNRLHTREISAFGGLVNNMPKYAVVFLIFTMANIGLPGSSGF 393
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 122/267 (45%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I ++Y GTL++ ++ N + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMVMYWEAGTLDIPTLLT----YQFNTHMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L I+ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFIRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG + I S I+
Sbjct: 273 ADFASLVFTLSLIAIIYTSLVALVQSDIKKLIAYSSVAHMGYVTMGIFSANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + +F +G ++ N T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGI--VSAALFLCVG------VIYNRL--HTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P + GF +F +F+ K+
Sbjct: 383 ANIGLPGSSGFIGEFLTLIGVFQVNKL 409
>gi|319404247|emb|CBI77840.1| NADH dehydrogenase I chain M [Bartonella rochalimae ATCC BAA-1498]
Length = 489
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/360 (54%), Positives = 275/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
+I Y +GIDG+S+ F+ L+AF+ IL S + I+ +L +YM AFL+L IIG FCALD
Sbjct: 76 DISYHVGIDGISVLFVVLSAFLLPFCILASWNTIQDRLKDYMIAFLLLEVAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFYIFFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 AILFYIFFEGSLIPMFIIIGVWGGARRIYASMKFFLYTLLGSVLMLVAIMVMYW-EAGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 195 DIPTLLTYQFNTHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS FS+L+ TLSLI+IIY SL+A+VQ DIKKLIAYSS+AHMG+
Sbjct: 255 LGGYGFIRFSLPMFPIASADFSSLVFTLSLIAIIYTSLVALVQSDIKKLIAYSSVAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + IQGAI QM+SH ++S+A+F+ +G +YN++ TR IS FGG++N +P ++
Sbjct: 315 VTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGVIYNRLHTREISAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGFIGEF+ ++ + N + V +T +I SAAY+L L + I+F
Sbjct: 375 VVFLIFTMANIGLPGSSGFIGEFLTLIGVFQVNKLVAVFATTGVILSAAYALYLYRRIVF 434
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ S ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFIRFSLPMFPIASADFSSLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQSDIKKLIAYSSVAHMGYVTMGIFSANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G +I N H ++I GGL MP + LI ++ +G P SGF
Sbjct: 339 IVSAALFLCVG-VIYNRLHTREISAFGGLVNNMPKYAVVFLIFTMANIGLPGSSGF 393
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 61/361 (16%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I ++Y GTL++ ++ N + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMVMYWEAGTLDIPTLLT----YQFNTHMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L I+ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFIRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG + I S I+
Sbjct: 273 ADFSSLVFTLSLIAIIYTSLVALVQSDIKKLIAYSSVAHMGYVTMGIFSANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + +F +G ++ N T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGI--VSAALFLCVG------VIYNRL--HTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYI 922
+ G P + GF +F +F+ K+ + A G I+
Sbjct: 383 ANIGLPGSSGFIGEFLTLIGVFQVNKL---------VAVFATTGVILSAA---------- 423
Query: 923 VEAIKAARKSALIINRGSLELENLR--FEEKKYENFVFNINKASEKIITKILFNTYPSYA 980
A+ R+ I GSLE ENL+ + E F +I I F YP+
Sbjct: 424 -YALYLYRR----IVFGSLEKENLKVLLDLSPIEKFTLY-----PMVILTIFFGVYPTPI 473
Query: 981 F 981
F
Sbjct: 474 F 474
>gi|15965031|ref|NP_385384.1| NADH dehydrogenase subunit M [Sinorhizobium meliloti 1021]
gi|334315821|ref|YP_004548440.1| proton-translocating NADH-quinone oxidoreductase chain M
[Sinorhizobium meliloti AK83]
gi|384528990|ref|YP_005713078.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sinorhizobium meliloti BL225C]
gi|384536729|ref|YP_005720814.1| probabable nadh dehydrogenase i chain m transmembrane protein
[Sinorhizobium meliloti SM11]
gi|407720222|ref|YP_006839884.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium meliloti Rm41]
gi|418402659|ref|ZP_12976167.1| NADH:ubiquinone oxidoreductase subunit M [Sinorhizobium meliloti
CCNWSX0020]
gi|433613052|ref|YP_007189850.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti GR4]
gi|15074210|emb|CAC45857.1| Probable NADH dehydrogenase I chain M transmembrane protein
[Sinorhizobium meliloti 1021]
gi|333811166|gb|AEG03835.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti BL225C]
gi|334094815|gb|AEG52826.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti AK83]
gi|336033621|gb|AEH79553.1| probabable nadh dehydrogenase i chain m transmembrane protein
[Sinorhizobium meliloti SM11]
gi|359503400|gb|EHK75954.1| NADH:ubiquinone oxidoreductase subunit M [Sinorhizobium meliloti
CCNWSX0020]
gi|407318454|emb|CCM67058.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium meliloti Rm41]
gi|429551242|gb|AGA06251.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti GR4]
Length = 503
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/379 (51%), Positives = 280/379 (73%), Gaps = 4/379 (1%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEY 269
P GF +K++ W+ I Y LG+DG+S+ F+PLTAF+ +L S + I+K+L EY
Sbjct: 59 PSNPGFQMVEKRE-WLGT-GISYHLGVDGISILFVPLTAFLMPFCVLASWVTIEKRLKEY 116
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFLIL L++G F +LD +LFY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL+G
Sbjct: 117 MIAFLILETLMLGVFVSLDIILFYVFFEAGLIPMFIIIGVWGGKERVYASYKFFLYTLLG 176
Query: 330 SLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPD 389
S+LML++M+ +Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPD
Sbjct: 177 SVLMLLAMMAMYWQAGTT-DITQLLAYQFPREMQTWLWLAFFASFAVKMPMWPVHTWLPD 235
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSVILA I+LKLG YG LRFSLP+FP AS +F+ + TLS+I+IIY SL+AM
Sbjct: 236 AHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFTLSIIAIIYTSLVAM 295
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
+Q DIKKLIAYSS+AHMG+VT+G F +QGAI QM+SH ++S A+F+ +G +Y+++
Sbjct: 296 MQTDIKKLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRL 355
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I+ +GG++N +P ++V F++F++AN LPGTSGF+GE + ++ A + N + + +
Sbjct: 356 HTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGEVLTLVGAFRANTWVALFAT 415
Query: 570 TALIFSAAYSLCLSKNIIF 588
T +I SAAY+L L + +IF
Sbjct: 416 TGVILSAAYALWLYRRVIF 434
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+I A + L+ ++Q DIK++IAYS+++ +GY+T+G V +IF +++H
Sbjct: 282 LSIIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ + + + L
Sbjct: 165 ASYKFFLYTLLGSVLMLLAMMAMYWQAGTTDITQLLAYQFPREMQTWLW----LAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
+ K+ + P H W+PD + G+ I+ +LL KL + + L + PL ++
Sbjct: 221 AVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KLGGYGFLRFSL--PMFPLASDF 274
Query: 746 -QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ L+I ++I ++ A+ Q + K++IAYSS+AHMG + + IF
Sbjct: 275 FAPFVFTLSIIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQM 334
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
G+ + GA + + + + + T E+ + GL P A+ M+F +
Sbjct: 335 LSHGI---------VSGALFLCVGVVYDRLH-TREIAAYGGLVNNMPKYAVAFMVFTMAN 384
Query: 865 AGFPPTIGFYAK 876
G P T GF +
Sbjct: 385 VGLPGTSGFVGE 396
>gi|433774839|ref|YP_007305306.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Mesorhizobium australicum WSM2073]
gi|433666854|gb|AGB45930.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Mesorhizobium australicum WSM2073]
Length = 501
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 276/369 (74%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+D I Y +G+DG+S+ F+ LT F+ + IL S + I+K++ YM AFL+L L
Sbjct: 68 EKVAWLDS-GISYHMGVDGISMLFVILTTFLMPLCILASWEAIEKRVKAYMIAFLLLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL GS+LML++++
Sbjct: 127 MIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+++ S + +I + S Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MFFQSGTT-DIPTLLTHSFPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LK+G YG LRFSLP+FP AS F+ L+ TLS+++IIY SL+A++Q D+KKLIA
Sbjct: 246 VILAGILLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF + + +QGAI QM+SH L+S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F+IF++AN LPGTSGF+GEF+ +L + N + +T +I SAAY+
Sbjct: 366 LVNNMPKYATVFLIFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPLASEMFAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP LI ++ VG P SGF +
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREIAAYGGLVNNMPKYATVFLIFTMANVGLPGTSGFVGE 396
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML I ++ +GT ++ ++ ++ ++ L
Sbjct: 165 ASFKFFLYTLAGSVLMLLAIMAMFFQSGTTDIPTLLT----HSFPANMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L + PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRFSLPMFPLASEMFAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 281 T-------LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQGAIFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + GA + + + + + T E+ + GL P A + +IF +
Sbjct: 334 MLSHGL---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNNMPKYATVFLIFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F +F
Sbjct: 384 NVGLPGTSGFVGEFLTMLGVFR 405
>gi|352081362|ref|ZP_08952240.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodanobacter sp. 2APBS1]
gi|389798945|ref|ZP_10201953.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter sp. 116-2]
gi|351683403|gb|EHA66487.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodanobacter sp. 2APBS1]
gi|388444300|gb|EIM00420.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter sp. 116-2]
Length = 502
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/381 (50%), Positives = 277/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ +WI + ++Y L +DG+S+ I +T F+ ++++ + + I+ K +YM+A LIL GL
Sbjct: 64 ESHLWIASWGVHYGLAVDGISVALIVMTTFVGILVVAGAWEVIQDKPHQYMAAMLILEGL 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCA D +LFY FEA LIP+FI+IG WGG R YA +KFF+YT GS+ MLI+++Y
Sbjct: 124 LIGVFCATDALLFYALFEAILIPMFILIGIWGGPRRVYATLKFFIYTFFGSVFMLIALLY 183
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++ +F++ + L +T EQ W+F F IAFAIK+P+ P+HTWLPDAHVEAPT GS
Sbjct: 184 LYQKAH-TFDLATLAALPLTFKEQAWIFFAFLIAFAIKVPMVPVHTWLPDAHVEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAA+MLK+G YG+LRF LPI PDA +F+ L+I LSL++I+YI +A+VQ D+KKL+A
Sbjct: 243 VVLAAVMLKVGTYGMLRFILPIVPDAGAHFAWLVIVLSLVAIVYIGYVALVQEDMKKLVA 302
Query: 460 YSSIAHMGFVTLGI---FMLTK---------ISIQGAIIQMISHALISSAMFISIGFLYN 507
YSS+AHMGFVTLGI FML + + +QGA++QMISH +S AMF IG +Y+
Sbjct: 303 YSSVAHMGFVTLGIFIAFMLVREQGHTDMALLGMQGAMVQMISHGFVSGAMFTCIGVMYD 362
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+ TRLI ++GG+INV+P F F+++F++ANC LPGTSGF+GEFM+ILS+ + I +
Sbjct: 363 RTHTRLIKDYGGVINVMPWFGFFYVLFAMANCGLPGTSGFVGEFMVILSSFSASPWIALF 422
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+ LI A Y+L L K +++
Sbjct: 423 AAFTLIIGAGYTLWLVKRVLW 443
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 109/221 (49%), Gaps = 27/221 (12%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR-MSPLFELSNTALSIILFI 107
K P+HTWLPD+ +E PT S ++ AA M+ G + + R + P+ + + ++ +
Sbjct: 220 KVPMVPVHTWLPDAHVEAPTGGSVVL-AAVMLKVGTYGMLRFILPIVPDAGAHFAWLVIV 278
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------- 151
++ A ++G + ++Q D+K+++AYS+++ +G++T+G+ ++ V
Sbjct: 279 LSLVAIVYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFIAFMLVREQGHTDMALLGMQG 338
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I++ GG+ MP ++ ++ G P
Sbjct: 339 AMVQMISHGFVSGAMFTCIG-VMYDRTHTRLIKDYGGVINVMPWFGFFYVLFAMANCGLP 397
Query: 212 FFSGFY-------SKDKKKIWIDYFNIYYFLGIDGLSLWFI 245
SGF S WI F + + G +LW +
Sbjct: 398 GTSGFVGEFMVILSSFSASPWIALFAAFTLIIGAGYTLWLV 438
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 128/286 (44%), Gaps = 29/286 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A +K+FI S FML + LY T +L ++ + + A ++
Sbjct: 162 ATLKFFIYTFFGSVFMLIALLYLYQKAHTFDLATLAAL----PLTFKEQAWIFFAFLIAF 217
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV---- 742
+ K+ + P H W+PD + G S+++ ++ L V Y +L + +LP+V
Sbjct: 218 AIKVPMVPVHTWLPDAHVEAPTGGSVVLAAVM-------LKVGTYGML-RFILPIVPDAG 269
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-----ISIKTSHN 797
++ ++++L++ +++ A+ Q + K+++AYSS+AHMG + I + + H
Sbjct: 270 AHFAWLVIVLSLVAIVYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFIAFMLVREQGHT 329
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
++ + + +I++ F F I ++ + T T + + G+ PW
Sbjct: 330 DMALLG-MQGAMVQMISHGFVSGAMFTCIGVMYDRT--HTRLIKDYGGVINVMPWFGFFY 386
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
++F + G P T GF +F + F W+ L +IGA
Sbjct: 387 VLFAMANCGLPGTSGFVGEFMVILSSFSASP-WIALFAAFTLIIGA 431
>gi|390952126|ref|YP_006415885.1| NADH dehydrogenase subunit M [Thiocystis violascens DSM 198]
gi|390428695|gb|AFL75760.1| NADH dehydrogenase subunit M [Thiocystis violascens DSM 198]
Length = 531
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/381 (53%), Positives = 283/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI FN+ YFLG+DG+S+ I LT FIT+ +I+ + I K ++YM+AFLI++G+
Sbjct: 65 ERSTWIPTFNVEYFLGVDGISMPLIILTTFITIFVIVAGWEVITYKPSQYMAAFLIMNGI 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+F+EA LIP+FIIIG WGG NR YA IKFFLYT GS+ ML+++IY
Sbjct: 125 MVGVFAALDAILFYVFWEAMLIPMFIIIGVWGGPNRVYATIKFFLYTFFGSVFMLVALIY 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ S SF+IL + L + QI +FI F +AFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 185 MYFQSG-SFSILDFQGLQLGMTAQILIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFS+PI PDAS + LII LSLI+I+YI +A+VQ D+KKLIA
Sbjct: 244 VILAAIMLKIGGYGFLRFSMPITPDASASLAWLIIALSLIAILYIGFVALVQQDMKKLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F++ I I+G ++QMISH IS A+F+ +G LY+
Sbjct: 304 YSSIAHMGFVTLGFFIVFSIIQNPALSSGSVMGIEGGMVQMISHGFISGALFLCVGVLYD 363
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ +R I+++GG++N +P F F + F+++N LPGTSGF+GEFM+IL+ + +F VL
Sbjct: 364 RVHSREIADYGGVVNTMPWFGAFMVFFAMSNAGLPGTSGFVGEFMVILATFRADFWWAVL 423
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI +AA++L + K ++F
Sbjct: 424 AATTLILAAAFTLWMVKRVVF 444
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 20/207 (9%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L +TA + F+ + K FP+HTWLPD+ +E PT S +I AA M+ G + R
Sbjct: 202 LGMTAQILIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGS-VILAAIMLKIGGYGFLR 260
Query: 90 MS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL--- 144
S P+ ++ +L+ +I+ + I ++G + ++Q D+K++IAYS+++ +G++T+G
Sbjct: 261 FSMPITPDASASLAWLIIALSLIAILYIGFVALVQQDMKKLIAYSSIAHMGFVTLGFFIV 320
Query: 145 -------GVSAYTV-----SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
+S+ +V + +++H F LFL G ++ + H+++I + GG+
Sbjct: 321 FSIIQNPALSSGSVMGIEGGMVQMISHGFISGALFLCVG-VLYDRVHSREIADYGGVVNT 379
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK 219
MP + +S G P SGF +
Sbjct: 380 MPWFGAFMVFFAMSNAGLPGTSGFVGE 406
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 26/272 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A IK+F+ S FML + +Y +G+ F+++ + + A L+ I L
Sbjct: 163 ATIKFFLYTFFGSVFMLVALIYMYFQSGS------FSILDFQGLQLGMTAQILIFIAFLL 216
Query: 691 SF--KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+F K+ + P H W+PD + G S+I+ ++ + + + I +
Sbjct: 217 AFAVKVPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--LRFSMPITPDASASLA 274
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM------LFSIISIKTSHNN 798
W I L L I L IG V A+ Q + K++IAYSSIAHMG + +FSII +
Sbjct: 275 WLIIALSL-IAILYIGFV-ALVQQDMKKLIAYSSIAHMGFVTLGFFIVFSIIQNPALSSG 332
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
++ + G+ +I++ F F + +L + ++ E+ + G+ PW M+
Sbjct: 333 SVM--GIEGGMVQMISHGFISGALFLCVGVLYDRVHSR--EIADYGGVVNTMPWFGAFMV 388
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
F S AG P T GF +F + F W
Sbjct: 389 FFAMSNAGLPGTSGFVGEFMVILATFRADFWW 420
>gi|260566622|ref|ZP_05837092.1| NADH-ubiquinone oxidoreductase [Brucella suis bv. 4 str. 40]
gi|261754795|ref|ZP_05998504.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv.
3 str. 686]
gi|260156140|gb|EEW91220.1| NADH-ubiquinone oxidoreductase [Brucella suis bv. 4 str. 40]
gi|261744548|gb|EEY32474.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv.
3 str. 686]
Length = 502
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 272/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y + +DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMSVDGISVLFVVLSAFLIPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 89.7 bits (221), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|388455148|ref|ZP_10137443.1| NADH-quinone oxidoreductase chain M [Fluoribacter dumoffii Tex-KL]
Length = 501
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/376 (53%), Positives = 282/376 (75%), Gaps = 13/376 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ I Y LGIDG+SL I L+ F L++IL + + I ++++Y++AFLI+ GL++G
Sbjct: 68 WMPALGISYSLGIDGMSLLLIVLSIFTNLVVILATWESITNRVSQYLAAFLIMQGLLVGV 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFYIF+EATLIP+++IIG WG NR YAAIKFFLYT +GS+LML S +Y+ YI
Sbjct: 128 FSALDAILFYIFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLASFLYMGYI 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SFNI +++ + ++ Q +FI FF+ FAIKIP++P+HTWLPDAH EAP GSV+LA
Sbjct: 188 AG-SFNIEAFYAIKLSMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPAGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI+LKLG YG +RFSLPI PDA ++ ++I LSLI+I+YI+LIA++Q D+K+LIAYSSI
Sbjct: 247 AILLKLGAYGFIRFSLPIVPDACSRYAGVMIALSLIAIVYIALIAIIQKDMKRLIAYSSI 306
Query: 464 AHMGFVTLG---IFMLTKIS--------IQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
+HMGFVTLG IF + K S ++GAI+ MISHA +SSA+F +G++Y++M TR
Sbjct: 307 SHMGFVTLGSFAIFAIAKQSGIGAAGLILEGAIVVMISHAFVSSALFAGVGYIYDRMHTR 366
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
+++ GGI+N +P F+ FF++F +AN LPGTSGF+GEFM+IL ++K F + +T L
Sbjct: 367 KLADLGGIVNTMPVFASFFMLFCMANAGLPGTSGFVGEFMVILGSLKAGFWVTFWAATTL 426
Query: 573 IFSAAYSLCLSKNIIF 588
I +A Y+L + K +IF
Sbjct: 427 ITAAGYNLWMYKRVIF 442
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 150/317 (47%), Gaps = 57/317 (17%)
Query: 9 FLGWEIVGMASYLLIGF---------WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTW 59
FLG ++ +AS+L +G+ +Y L++TA F+ +G K FP+HTW
Sbjct: 171 FLG-SVLMLASFLYMGYIAGSFNIEAFYAIKLSMTAQTLIFIAFFLGFAIKIPMFPVHTW 229
Query: 60 LPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGL 117
LPD+ +++ AA ++ G + R S P+ + + +++ + I ++ L
Sbjct: 230 LPDAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACSRYAGVMIALSLIAIVYIAL 289
Query: 118 LGIIQNDIKRIIAYSTLSQLGYMTVG----------LGVSAYTV----SIFHLMTHAFFK 163
+ IIQ D+KR+IAYS++S +G++T+G G+ A + +I +++HAF
Sbjct: 290 IAIIQKDMKRLIAYSSISHMGFVTLGSFAIFAIAKQSGIGAAGLILEGAIVVMISHAFVS 349
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK---- 219
+ LF G I M H + + ++GG+ MP+ ++ ++ G P SGF +
Sbjct: 350 SALFAGVGYIYDRM-HTRKLADLGGIVNTMPVFASFFMLFCMANAGLPGTSGFVGEFMVI 408
Query: 220 ---DKKKIWIDYFNIYYFLGIDGLSLW------FIP----------------LTAFITLI 254
K W+ ++ + G +LW F P L+A+I L
Sbjct: 409 LGSLKAGFWVTFWAATTLITAAGYNLWMYKRVIFGPVANEKVAALKDLSGFELSAYILLA 468
Query: 255 IILISLDI-KKKLAEYM 270
+++I++ + K L EY+
Sbjct: 469 LMVIAMGVYPKPLLEYI 485
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 30/291 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L I+ L+ + L + I N ++ AAIK+F+ L S ML + I G+
Sbjct: 135 LFYIFWEATLIPMYLIIGIWGSDNRVY---AAIKFFLYTFLGSVLMLASFLYMGYIAGSF 191
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITL 716
+++ F IKL+ +++ ++ L G + K+ + P H W+PD + G S+++
Sbjct: 192 NIEA-FYAIKLSMTAQTLIFIAFFL---GFAIKIPMFPVHTWLPDAHTEAPAGGSVVLAA 247
Query: 717 LLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKR 772
+L KL + I+ LP+V + + +++ L++ +++ + AI Q + KR
Sbjct: 248 ILL---KLGAYG-----FIRFSLPIVPDACSRYAGVMIALSLIAIVYIALIAIIQKDMKR 299
Query: 773 MIAYSSIAHMGLML---FSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAF-GVIIL 828
+IAYSSI+HMG + F+I +I + + +I++ F F GV +
Sbjct: 300 LIAYSSISHMGFVTLGSFAIFAIAKQSGIGAAGLILEGAIVVMISHAFVSSALFAGVGYI 359
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
K +L G+ P A M+F + AG P T GF +F +
Sbjct: 360 YDRMHTRKLADLG---GIVNTMPVFASFFMLFCMANAGLPGTSGFVGEFMV 407
>gi|254500852|ref|ZP_05113003.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Labrenzia alexandrii DFL-11]
gi|222436923|gb|EEE43602.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Labrenzia alexandrii DFL-11]
Length = 505
Score = 398 bits (1023), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/423 (48%), Positives = 295/423 (69%), Gaps = 10/423 (2%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFS----GFYSKDKKKIWI 226
G + + M D + G + +T T + LSLV FF GF +++ W+
Sbjct: 17 GVVFVLMVSGNDDQAKGQMRMVALVT--TGMTFGLSLVIWAFFDYSNPGFQFVEERD-WL 73
Query: 227 DYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFC 285
NI Y +G+DG+SL F+ LTAF+ IL S ++ ++ EYM AFLIL L+IG FC
Sbjct: 74 GS-NISYKMGVDGISLLFVVLTAFLMPFCILASWKSVQNRVREYMVAFLILETLMIGVFC 132
Query: 286 ALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISN 345
ALD ++FY+FFEA LIP+F+IIG WGG+ R YA+ KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 133 ALDIVVFYVFFEAGLIPMFLIIGVWGGARRVYASYKFFLYTLLGSVLMLVAIMAMYWTAG 192
Query: 346 KSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAI 405
+ +I Q WL+I FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA +
Sbjct: 193 TT-DIQELLVYQFPPEMQTWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 251
Query: 406 MLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAH 465
+LKLG YG LRFSLP+FP AS F+ L+ TLS+++IIY SL+A+ Q DIKKLIAYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPLASDMFAPLVYTLSVVAIIYTSLVALAQEDIKKLIAYSSVAH 311
Query: 466 MGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIP 525
MG+VTLGIF +T +QG I QM+SH ++S A+F+ +G +Y++M TR IS +GG++N +P
Sbjct: 312 MGYVTLGIFTMTPQGVQGGIFQMLSHGIVSGALFLCVGVIYDRMHTREISAYGGLVNRMP 371
Query: 526 HFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKN 585
++V F+IF++AN LPGTSGF+GE ++++ A + N + V + +I SA Y+L L +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFVGEILVLIGAFQVNTWVAVFATLGVILSACYALYLYRR 431
Query: 586 IIF 588
++F
Sbjct: 432 VVF 434
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPLASDMFAPLVYT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ + Q DIK++IAYS+++ +GY+T+G+ GV IF +++H
Sbjct: 282 LSVVAIIYTSLVALAQEDIKKLIAYSSVAHMGYVTLGIFTMTPQGVQG---GIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREISAYGGLVNRMPKYAVAFLIFTMANVGLPGTSGFVGE 396
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I +Y GT ++Q + + + +
Sbjct: 165 ASYKFFLYTLLGSVLMLVAIMAMYWTAGTTDIQELL----VYQFPPEMQTWLWIAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPLASDMFAPLVY 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 281 T-------LSVVAIIYTSLVALAQEDIKKLIAYSSVAHMGYVTLGIFTMTPQGVQGGIFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+ + GA + + + + + T E+ + GL R P A+ +IF +
Sbjct: 334 MLSHGI---------VSGALFLCVGVIYDRMH-TREISAYGGLVNRMPKYAVAFLIFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF + + F+
Sbjct: 384 NVGLPGTSGFVGEILVLIGAFQ 405
>gi|444310738|ref|ZP_21146357.1| NADH:ubiquinone oxidoreductase subunit M [Ochrobactrum intermedium
M86]
gi|443485940|gb|ELT48723.1| NADH:ubiquinone oxidoreductase subunit M [Ochrobactrum intermedium
M86]
Length = 502
Score = 398 bits (1023), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 271/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLKYDFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I LS+I+IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFALSVIAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRQVIF 434
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVIAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GT+ N+++L + + L +
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLKYDFPAGMQTWLWLAFFA 218
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
SF K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFALSVIAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|239831698|ref|ZP_04680027.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Ochrobactrum intermedium LMG 3301]
gi|239823965|gb|EEQ95533.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Ochrobactrum intermedium LMG 3301]
Length = 511
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 271/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 85 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 144
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 145 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 203
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 204 NIVELLKYDFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 263
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I LS+I+IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 264 LGGYGFIRFSLPMFPLASADFAPFIFALSVIAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 323
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 324 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 383
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 384 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRQVIF 443
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFA 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 291 LSVIAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 351 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 402
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GT+ N+++L + + L +
Sbjct: 174 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLKYDFPAGMQTWLWLAFFA 227
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
SF K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 228 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 279
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 280 ASADFAPFIFALSVIAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 339
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 340 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 389
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 390 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 421
>gi|397665370|ref|YP_006506908.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Legionella
pneumophila subsp. pneumophila]
gi|395128781|emb|CCD07001.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Legionella
pneumophila subsp. pneumophila]
Length = 501
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 281/376 (74%), Gaps = 13/376 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ I Y LGIDGLSL I L+ F LI+IL + D I KK+++Y+SAFLI+ GL++G
Sbjct: 68 WMPALGINYTLGIDGLSLLLIVLSIFTNLIVILATWDSISKKVSQYLSAFLIMQGLLVGI 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A+D ++FYIF+EATLIP+++IIG WG NR YAAIKFFLYT +GS+LML S +Y+ YI
Sbjct: 128 FSAMDAIVFYIFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLASFLYMGYI 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +++ + + Q +FI FF+ FAIKIP++P+HTWLPDAH EAP GSV+LA
Sbjct: 188 AG-SFKIETFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPAGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI+LKLG YG +RFSLPI PDA ++ L++ LSLI+++YI LIA++Q D+KKLIAYSSI
Sbjct: 247 AILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIAIIQKDMKKLIAYSSI 306
Query: 464 AHMGFVTLGIFMLTKIS-----------IQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
+HMGFVTLG F + I+ ++GAI+ MISHA +SSAMF +GF+Y++M TR
Sbjct: 307 SHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVSSAMFAGVGFIYDRMHTR 366
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
+++FGGI+N +P F+ FF++F++AN LPGTSGF+GEFM+IL ++K F + +T L
Sbjct: 367 QLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMVILGSIKAGFWVAFWAATTL 426
Query: 573 IFSAAYSLCLSKNIIF 588
I AAY+L + K +IF
Sbjct: 427 IIGAAYTLWMYKRVIF 442
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 9 FLGWEIVGMASYLLIGF---------WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTW 59
FLG ++ +AS+L +G+ +Y L +TA F+ +G K FP+HTW
Sbjct: 171 FLG-SVLMLASFLYMGYIAGSFKIETFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTW 229
Query: 60 LPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGL 117
LPD+ +++ AA ++ G + R S P+ + + +++ + I ++GL
Sbjct: 230 LPDAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGL 289
Query: 118 LGIIQNDIKRIIAYSTLSQLGYMTVGL----------GVSAYTV----SIFHLMTHAFFK 163
+ IIQ D+K++IAYS++S +G++T+G G+S + +I +++HAF
Sbjct: 290 IAIIQKDMKKLIAYSSISHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVS 349
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ +F G I M H + + + GG+ MPI ++ ++ G P SGF +
Sbjct: 350 SAMFAGVGFIYDRM-HTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGE 404
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 36/285 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ AAIK+F+ L S ML + I G+ ++++ F I
Sbjct: 144 LIPMYLIIGIWGSDNRVY---AAIKFFLYTFLGSVLMLASFLYMGYIAGSFKIET-FYAI 199
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
KL +++ ++ L G + K+ + P H W+PD + G S+++ +L KL
Sbjct: 200 KLGMTAQTLIFIAFFL---GFAIKIPMFPVHTWLPDAHTEAPAGGSVVLAAILL---KLG 253
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ I+ LP+V + + +++ L++ +++ + AI Q + K++IAYSSI+H
Sbjct: 254 AYG-----FIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIAIIQKDMKKLIAYSSISH 308
Query: 782 MG---LMLFSIISIKT----SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
MG L F+I +I S+ LI+ + + +I++ F F + + +
Sbjct: 309 MGFVTLGCFAIFAIARHGGLSNAGLIL----EGAIVVMISHAFVSSAMFAGVGFIYDRM- 363
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
T +L F G+ P A M+F + AG P T GF +F +
Sbjct: 364 -HTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMV 407
>gi|423713834|ref|ZP_17688094.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395421640|gb|EJF87876.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 498
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 272/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + +K +L YM AFL+L IIG FCALD
Sbjct: 85 GISYHMGVDGISILFVVLSAFLLPFCILASWENVKDRLKAYMIAFLLLEVAIIGVFCALD 144
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
MLFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYTL+GS+LML++++ +Y+ +
Sbjct: 145 AMLFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLMLVALMAMYW-EAGTL 203
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 204 DIPTLLTYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 263
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS + L+ TLSLI+IIY SL+A+VQ DIKKLIAYSSIAHMG+
Sbjct: 264 LGGYGFLRFSLPMFPIASADLAPLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGY 323
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++
Sbjct: 324 VTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYA 383
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGF+GEF+ ++ + N + V +T +I SAAY+L L + ++F
Sbjct: 384 VVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVFATTGVILSAAYALYLYRRVVF 443
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ L+ ++F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADLAPLVFT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 291 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 348 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 405
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 38/271 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ + L
Sbjct: 174 ASIKFFLYTLLGSVLMLVALMAMYWEAGTLDIPTLLT----YQFPAHMQIWLWLAFFASF 229
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ + L PLV
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASADLAPLVF 289
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 290 T-------LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQ 342
Query: 804 SCDSG-----LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
G LF + I+ L T E+ F GL P A++ +
Sbjct: 343 MLSHGIVSAALFLCVGVIYDRL---------------HTREISAFGGLVNNMPKYAVVFL 387
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
IF + G P + GF +F +F+ K+
Sbjct: 388 IFTMANVGLPGSSGFLGEFLTLIGVFQVNKL 418
>gi|357026731|ref|ZP_09088824.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium amorphae
CCNWGS0123]
gi|355541373|gb|EHH10556.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium amorphae
CCNWGS0123]
Length = 501
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/417 (48%), Positives = 292/417 (70%), Gaps = 5/417 (1%)
Query: 173 IIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIY 232
+ IN RN+ + + T IT ++ L G + +K W+D I
Sbjct: 22 LFINDDSENARRNIRAIALW--TTSITFIVSLFIWTGFDNSQAGFQFVEKFAWLDS-GIS 78
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+S+ F+ LT F+ + IL S + I+K++ YM AFL+L L+IG FCALD +L
Sbjct: 79 YHLGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMIAFLLLETLMIGVFCALDIVL 138
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL GS+LML++++ +++ S + +I
Sbjct: 139 FYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAIMAMFFQSGTT-DIP 197
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILAAI+LK+G
Sbjct: 198 TLLTHNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGG 257
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP AS F+ L+ TLS+++IIY SL+A++Q D+KKLIAYSS+AHMGFVT+
Sbjct: 258 YGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTM 317
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF + + +QGAI QM+SH L+S A+F+ +G +Y++M TR I +GG++N +P ++ F
Sbjct: 318 GIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTRDIDAYGGLVNNMPKYATVF 377
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGF+GEF+ +L + N + +T ++ SAAY+L L + +IF
Sbjct: 378 MVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVVLSAAYALWLYRRVIF 434
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H +DI GGL MP ++ ++ VG P SGF +
Sbjct: 339 LVSGALFLCVG-VIYDRMHTRDIDAYGGLVNNMPKYATVFMVFTMANVGLPGTSGFVGE 396
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML I ++ +GT ++ ++ +N S+ L
Sbjct: 165 ASFKFFLYTLAGSVLMLLAIMAMFFQSGTTDIPTLLT----HNFPASMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L + PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 281 T-------LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQGAIFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + GA + + + + + T ++D + GL P A + M+F +
Sbjct: 334 MLSHGL---------VSGALFLCVGVIYDRMH-TRDIDAYGGLVNNMPKYATVFMVFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F +F
Sbjct: 384 NVGLPGTSGFVGEFLTMLGVFR 405
>gi|148560286|ref|YP_001258792.1| NADH dehydrogenase subunit M [Brucella ovis ATCC 25840]
gi|148371543|gb|ABQ61522.1| NADH dehydrogenase I, M subunit [Brucella ovis ATCC 25840]
Length = 502
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 272/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N + ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNKMSKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPGTSGFIGEF+ + + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRKVIF 434
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL M + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNKMSKYAVAFLIFTMANVGLPGTSGF 393
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL + A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNKMSKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 381 TMANVGLPGTSGFIGEFLTLFGVFRVNT-WVAL 412
>gi|52842975|ref|YP_096774.1| NADH dehydrogenase I subunit M [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54295606|ref|YP_128021.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str.
Lens]
gi|54298760|ref|YP_125129.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str.
Paris]
gi|296108420|ref|YP_003620121.1| NADH dehydrogenase I subunit M [Legionella pneumophila 2300/99
Alcoy]
gi|378778660|ref|YP_005187102.1| NADH dehydrogenase I subunit M [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|397668448|ref|YP_006509985.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Legionella
pneumophila subsp. pneumophila]
gi|52630086|gb|AAU28827.1| NADH dehydrogenase I, M subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752545|emb|CAH13977.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str.
Paris]
gi|53755438|emb|CAH16934.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str.
Lens]
gi|295650322|gb|ADG26169.1| NADH dehydrogenase I chain M [Legionella pneumophila 2300/99 Alcoy]
gi|307611648|emb|CBX01335.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila 130b]
gi|364509478|gb|AEW53002.1| NADH dehydrogenase I, M subunit [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|395131859|emb|CCD10152.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Legionella
pneumophila subsp. pneumophila]
Length = 501
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 281/376 (74%), Gaps = 13/376 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ I Y LGIDGLSL I L+ F LI+IL + D I KK+++Y+SAFLI+ GL++G
Sbjct: 68 WMPALGINYTLGIDGLSLLLIVLSIFTNLIVILATWDSISKKVSQYLSAFLIMQGLLVGI 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A+D ++FYIF+EATLIP+++IIG WG NR YAAIKFFLYT +GS+LML S +Y+ YI
Sbjct: 128 FSAMDAIVFYIFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLASFLYMGYI 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +++ + + Q +FI FF+ FAIKIP++P+HTWLPDAH EAP GSV+LA
Sbjct: 188 AG-SFKIETFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPAGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI+LKLG YG +RFSLPI PDA ++ L++ LSLI+++YI LIA++Q D+KKLIAYSSI
Sbjct: 247 AILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIAIIQKDMKKLIAYSSI 306
Query: 464 AHMGFVTLGIFMLTKIS-----------IQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
+HMGFVTLG F + I+ ++GAI+ MISHA +SSAMF +GF+Y++M TR
Sbjct: 307 SHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVSSAMFAGVGFIYDRMHTR 366
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
+++FGGI+N +P F+ FF++F++AN LPGTSGF+GEFM+IL ++K F + +T L
Sbjct: 367 QLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMVILGSIKAGFWVAFWAATTL 426
Query: 573 IFSAAYSLCLSKNIIF 588
I AAY+L + K +IF
Sbjct: 427 IIGAAYTLWMYKRVIF 442
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 9 FLGWEIVGMASYLLIGF---------WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTW 59
FLG ++ +AS+L +G+ +Y L +TA F+ +G K FP+HTW
Sbjct: 171 FLG-SVLMLASFLYMGYIAGSFKIETFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTW 229
Query: 60 LPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGL 117
LPD+ +++ AA ++ G + R S P+ + + +++ + I ++GL
Sbjct: 230 LPDAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGL 289
Query: 118 LGIIQNDIKRIIAYSTLSQLGYMTVGL----------GVSAYTV----SIFHLMTHAFFK 163
+ IIQ D+K++IAYS++S +G++T+G G+S + +I +++HAF
Sbjct: 290 IAIIQKDMKKLIAYSSISHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVS 349
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ +F G I M H + + + GG+ MPI ++ ++ G P SGF +
Sbjct: 350 SAMFAGVGFIYDRM-HTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGE 404
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 36/285 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ AAIK+F+ L S ML + I G+ ++++ F I
Sbjct: 144 LIPMYLIIGIWGSDNRVY---AAIKFFLYTFLGSVLMLASFLYMGYIAGSFKIET-FYAI 199
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
KL +++ ++ L G + K+ + P H W+PD + G S+++ +L KL
Sbjct: 200 KLGMTAQTLIFIAFFL---GFAIKIPMFPVHTWLPDAHTEAPAGGSVVLAAILL---KLG 253
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ I+ LP+V + + +++ L++ +++ + AI Q + K++IAYSSI+H
Sbjct: 254 AYG-----FIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIAIIQKDMKKLIAYSSISH 308
Query: 782 MG---LMLFSIISIKT----SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
MG L F+I +I S+ LI+ + + +I++ F F + + +
Sbjct: 309 MGFVTLGCFAIFAIARHGGLSNAGLIL----EGAIVVMISHAFVSSAMFAGVGFIYDRM- 363
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
T +L F G+ P A M+F + AG P T GF +F +
Sbjct: 364 -HTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMV 407
>gi|163793199|ref|ZP_02187175.1| NADH dehydrogenase subunit M [alpha proteobacterium BAL199]
gi|159181845|gb|EDP66357.1| NADH dehydrogenase subunit M [alpha proteobacterium BAL199]
Length = 504
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 275/369 (74%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI +I Y +G+DG+S+WF+ L+ +T I IL S + ++ ++ EYM AFL+L L
Sbjct: 69 ERYDWIPGSSIAYHVGVDGISMWFVLLSTLLTPICILASWEAVQSRVKEYMIAFLVLETL 128
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD ++FY+FFE LIP+F+IIG WGG R YAA KFFLYTL GS+LM+I+++
Sbjct: 129 MVGMFCALDILVFYVFFEGVLIPMFLIIGVWGGQRRVYAAFKFFLYTLGGSVLMMIAILA 188
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 189 MYWEAGTT-DIPTLLVFKFAPALQTWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGS 247
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LK+G YG LRFS+P+FP+AS YF+ L+ LS++++IY SL+A+VQ D+KKLIA
Sbjct: 248 VILAGVLLKMGGYGFLRFSIPMFPEASDYFAPLVFALSVVAVIYTSLVALVQQDMKKLIA 307
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+G+F LT ++G+I QM+SH ++S A+F+ +G +Y+++ TR IS +GG
Sbjct: 308 YSSVAHMGFVTIGMFTLTTQGVEGSIFQMLSHGVVSGALFLCVGVVYDRLHTREISAYGG 367
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ N +P +++ F++F+LA+ LPGTSGF+GE +I+ A K N + L +T LI AAY
Sbjct: 368 LANNMPRYALVFMVFTLASVGLPGTSGFVGELLILTGAFKVNTWLAALAATGLILGAAYM 427
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 428 LYLYRRVVF 436
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F E S+ ++
Sbjct: 225 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSIPMFPEASDYFAPLVFA 283
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q D+K++IAYS+++ +G++T+G L SIF +++H
Sbjct: 284 LSVVAVIYTSLVALVQQDMKKLIAYSSVAHMGFVTIGMFTLTTQGVEGSIFQMLSHGVVS 343
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ L+ VG P SGF +
Sbjct: 344 GALFLCVG-VVYDRLHTREISAYGGLANNMPRYALVFMVFTLASVGLPGTSGFVGE 398
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 17/275 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S M+ I +Y GT ++ ++ V K + L L+
Sbjct: 167 AAFKFFLYTLGGSVLMMIAILAMYWEAGTTDIPTLL-VFKFAPALQTWLWLAFF---ASF 222
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ K+ + + R I + ++
Sbjct: 223 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFL-RFSIPMFPEASDYFAPLV 281
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ ++I ++ A+ Q + K++IAYSS+AHMG + + ++ T IF G+
Sbjct: 282 FALSVVAVIYTSLVALVQQDMKKLIAYSSVAHMGFVTIGMFTLTTQGVEGSIFQMLSHGV 341
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
+ GA + + + + + T E+ + GL P AL+ M+F + G P
Sbjct: 342 ---------VSGALFLCVGVVYDRLH-TREISAYGGLANNMPRYALVFMVFTLASVGLPG 391
Query: 870 TIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
T GF + I F+ WL L ++GA
Sbjct: 392 TSGFVGELLILTGAFKVNT-WLAALAATGLILGAA 425
>gi|395792409|ref|ZP_10471843.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella vinsonii subsp. arupensis Pm136co]
gi|395432587|gb|EJF98566.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella vinsonii subsp. arupensis Pm136co]
Length = 498
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 272/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + +K +L YM AFL+L IIG FCALD
Sbjct: 85 GISYHMGVDGISILFVVLSAFLLPFCILASWENVKDRLKAYMIAFLLLEVAIIGVFCALD 144
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
MLFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYTL+GS+LML++++ +Y+ +
Sbjct: 145 AMLFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLMLVALMAMYW-EAGTL 203
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 204 DIPTLLTYQFPTHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 263
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS + L+ TLSLI+IIY SL+A+VQ DIKKLIAYSSIAHMG+
Sbjct: 264 LGGYGFLRFSLPMFPIASADLAPLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGY 323
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++
Sbjct: 324 VTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYA 383
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGF+GEF+ ++ + N + V +T +I SAAY+L L + ++F
Sbjct: 384 VVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVFATTGVILSAAYALYLYRRVVF 443
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ L+ ++F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADLAPLVFT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 291 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 348 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 405
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 38/271 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ ++ + L
Sbjct: 174 ASIKFFLYTLLGSVLMLVALMAMYWEAGTLDIPTLLTYQFPTHMQIWLW----LAFFASF 229
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ + L PLV
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASADLAPLVF 289
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 290 T-------LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQ 342
Query: 804 SCDSG-----LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
G LF + I+ L T E+ F GL P A++ +
Sbjct: 343 MLSHGIVSAALFLCVGVIYDRL---------------HTREISAFGGLVNNMPKYAVVFL 387
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
IF + G P + GF +F +F+ K+
Sbjct: 388 IFTMANVGLPGSSGFLGEFLTLIGVFQVNKL 418
>gi|319408591|emb|CBI82246.1| NADH dehydrogenase I chain M [Bartonella schoenbuchensis R1]
Length = 489
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 274/360 (76%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + IK +L YM AFL+L IIG FCALD
Sbjct: 76 GISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLLLEVAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
MLFY+FFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 AMLFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMAMYW-EAGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + + Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 195 DIPTLLTYQFSTHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ L+ LSL++IIY SL+A+VQ DIKKLIAYSSIAHMG+
Sbjct: 255 LGGYGFLRFSLPMFPIASADFAPLVFVLSLVAIIYTSLVALVQNDIKKLIAYSSIAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + + IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++
Sbjct: 315 VTMGIFAINEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGF+GEF+ ++ + N + V +T +I SAAY+L L + +IF
Sbjct: 375 VVFLIFTMANVGLPGSSGFLGEFLTLIGVFQINKLVAVFATTGVILSAAYALYLYRRMIF 434
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F+
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFV 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLVAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAINEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GTL++ ++ + + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMAMYWEAGTLDIPTLLT----YQFSTHMQMWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ +L++ ++I ++ A+ Q + K++IAYSSIAHMG + I +I I+
Sbjct: 273 ADFAPLVFVLSLVAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAINEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P + GF +F +F+ K+
Sbjct: 383 ANVGLPGSSGFLGEFLTLIGVFQINKL 409
>gi|406706142|ref|YP_006756495.1| NADH dehydrogenase subunit M [alpha proteobacterium HIMB5]
gi|406651918|gb|AFS47318.1| NADH dehydrogenase subunit M [alpha proteobacterium HIMB5]
Length = 491
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/379 (53%), Positives = 290/379 (76%), Gaps = 7/379 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIIL-ISLDIKKKLAEYMSAFLI 275
+ +D++ WI F I Y +GIDG+S+ FI LT FIT + IL ++ +K +L +++ A LI
Sbjct: 64 FVEDRQ--WIKGF-INYKVGIDGISILFIVLTTFITPLCILSVNNTVKNRLRDFLIAILI 120
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ +IG FCALD ++FY+FFEA LIP+F+IIG WGG R Y+A KFFLYTL+GS+LML+
Sbjct: 121 MESFMIGVFCALDLVIFYLFFEAGLIPMFLIIGIWGGPRRVYSAFKFFLYTLLGSVLMLV 180
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
++I +Y+I N + +++ ++L I Q L++ FF +FA+K P+WP+HTWLPDAHVEAP
Sbjct: 181 AIISIYWI-NGTTDVVKLYELGIDVKYQNLLWLAFFSSFAVKTPMWPVHTWLPDAHVEAP 239
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSV+LAAI+LK+ YG +RFSL +FP+AS F+ LI TLS+I+II+ SLIA++Q D+K
Sbjct: 240 TAGSVLLAAILLKMAGYGFIRFSLGLFPEASETFTPLIYTLSIIAIIFTSLIALMQEDMK 299
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMGFVTLGIF + + I+G+IIQMISH L+S+A+F+ +G +Y++M +RLIS
Sbjct: 300 KLIAYSSVAHMGFVTLGIFTIQQQGIEGSIIQMISHGLVSAALFLCVGVVYDRMHSRLIS 359
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GGI+ ++P ++V F+IF+LA LPGTSGFIGEF+I++ A K NF + VL S +I
Sbjct: 360 TYGGIVTIVPKYAVLFMIFTLAALGLPGTSGFIGEFLILMGAFKDNFLVAVLASLGVILG 419
Query: 576 AAYSLCLSKNIIFVLGQMI 594
AAY L L K ++F G++I
Sbjct: 420 AAYMLWLYKRVVF--GKLI 436
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 12/176 (6%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILF 106
K+ +P+HTWLPD+ +E PT S L+ A + AG I LF E S T +I
Sbjct: 220 VKTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFIRFSLGLFPEASETFTPLIYT 279
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I F L+ ++Q D+K++IAYS+++ +G++T+G+ G+ SI +++H
Sbjct: 280 LSIIAIIFTSLIALMQEDMKKLIAYSSVAHMGFVTLGIFTIQQQGIEG---SIIQMISHG 336
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G ++ + H++ I GG+ +P + +I L+ +G P SGF
Sbjct: 337 LVSAALFLCVG-VVYDRMHSRLISTYGGIVTIVPKYAVLFMIFTLAALGLPGTSGF 391
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 20/258 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
+A K+F+ +L S ML I +Y I GT + V+KL + V +LL +
Sbjct: 163 SAFKFFLYTLLGSVLMLVAIISIYWINGTTD------VVKLYELGIDVKYQNLLWLAFFS 216
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
SF K + P H W+PD + A ++LL+ K++ + I R + +
Sbjct: 217 SFAVKTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFI-RFSLGLFPEASETFTP 275
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
++ L+I ++I ++ A+ Q + K++IAYSS+AHMG + I +I+ I
Sbjct: 276 LIYTLSIIAIIFTSLIALMQEDMKKLIAYSSVAHMGFVTLGIFTIQQQGIEGSIIQMISH 335
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
GL A+ GV+ ++ T + G+ P A++ MIF + G
Sbjct: 336 GLVSA-----ALFLCVGVVYDRMHSRLIST-----YGGIVTIVPKYAVLFMIFTLAALGL 385
Query: 868 PPTIGFYAKFFIFEKIFE 885
P T GF +F I F+
Sbjct: 386 PGTSGFIGEFLILMGAFK 403
>gi|118590025|ref|ZP_01547429.1| NADH dehydrogenase subunit M [Stappia aggregata IAM 12614]
gi|118437522|gb|EAV44159.1| NADH dehydrogenase subunit M [Stappia aggregata IAM 12614]
Length = 508
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/378 (51%), Positives = 282/378 (74%), Gaps = 8/378 (2%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
SGF + ++ W+ NI Y +G+DG+S+ F+ LT F+ IL S D ++K++ EYM A
Sbjct: 62 SGFQFVEHRE-WLGS-NISYRMGVDGISVLFVILTTFLMPFCILASWDSVQKRVKEYMIA 119
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L L+IG FCALD ++FY+FFEA LIP+F+IIG WGG+ R YA+ KFFLYTL+GS+L
Sbjct: 120 FLVLETLMIGVFCALDLVVFYVFFEAGLIPMFLIIGVWGGARRVYASYKFFLYTLLGSVL 179
Query: 333 MLISMIYLYYISNKSFNI--LSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
MLI+++ +Y+ + + NI L HQ Q WL++ FF +FA+K+P+WP+HTWLPDA
Sbjct: 180 MLIAIMAMYWNAGTT-NIEELLVHQFPAGM--QTWLWLAFFASFAVKMPMWPVHTWLPDA 236
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
HVEAPT GSVILA ++LKLG YG LRFSLP+FP AS F+ + TLS+++IIY SL+A+
Sbjct: 237 HVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPLASDMFAPFVFTLSVVAIIYTSLVALA 296
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q DIKKLIAYSS+AHMG+VT+GIF +T+ +QG I QM+SH ++S A+F+ +G +Y++M
Sbjct: 297 QEDIKKLIAYSSVAHMGYVTMGIFTMTEQGVQGGIFQMLSHGIVSGALFLCVGVIYDRMH 356
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
TR I+ +GG++N +P ++V F+IF++AN LPGTSGF+GE + ++ A + N + +T
Sbjct: 357 TRDITAYGGLVNRMPKYAVAFLIFTMANVGLPGTSGFVGEILTLMGAFQVNSWVAFFATT 416
Query: 571 ALIFSAAYSLCLSKNIIF 588
+I SAAY+L L + ++F
Sbjct: 417 GVILSAAYALYLYRRVVF 434
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPLASDMFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ + Q DIK++IAYS+++ +GY+T+G+ GV IF +++H
Sbjct: 282 LSVVAIIYTSLVALAQEDIKKLIAYSSVAHMGYVTMGIFTMTEQGVQG---GIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H +DI GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTRDITAYGGLVNRMPKYAVAFLIFTMANVGLPGTSGFVGE 396
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 112/259 (43%), Gaps = 16/259 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I +Y GT ++ + ++ + L
Sbjct: 165 ASYKFFLYTLLGSVLMLIAIMAMYWNAGTTNIEELL----VHQFPAGMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN-WQKIL 749
+ K+ + P H W+PD + A +++L+ L L + + PL + + +
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV-LLKLGGYGFLRFSLPMFPLASDMFAPFV 279
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF G+
Sbjct: 280 FTLSVVAIIYTSLVALAQEDIKKLIAYSSVAHMGYVTMGIFTMTEQGVQGGIFQMLSHGI 339
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
+ GA + + + + + T ++ + GL R P A+ +IF + G P
Sbjct: 340 ---------VSGALFLCVGVIYDRMH-TRDITAYGGLVNRMPKYAVAFLIFTMANVGLPG 389
Query: 870 TIGFYAKFFIFEKIFETQK 888
T GF + F+
Sbjct: 390 TSGFVGEILTLMGAFQVNS 408
>gi|350563162|ref|ZP_08931984.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioalkalimicrobium aerophilum AL3]
gi|349779026|gb|EGZ33373.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioalkalimicrobium aerophilum AL3]
Length = 504
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/381 (53%), Positives = 280/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI +NI YFLG+DGLS+ + LT F +++I + IK ++ +YM AF+I+ G+
Sbjct: 66 ERMDWIPQYNIQYFLGVDGLSMPLVLLTTFTQILVIASAWTVIKDRVEQYMGAFMIMQGI 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+F+EA LIP+FI+IG WGG R YA +KFFLYT +GS+ M I+ +Y
Sbjct: 126 MIGVFTALDSILFYVFWEALLIPMFIVIGKWGGPRRVYATMKFFLYTFLGSVFMFIAFLY 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ SF+IL +H + + QI +F+ F +AFA+KIP++P+HTWLPDAHVEAPT GS
Sbjct: 186 MYF-QIGSFSILDFHAMPLGITAQILIFLAFLVAFAVKIPMFPVHTWLPDAHVEAPTAGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG +RFSLPI PDAS LII LSLI+I+YI IA++Q D+KKL+A
Sbjct: 245 VVLAAIMLKMGGYGFVRFSLPITPDASATLDWLIILLSLIAIVYIGFIALIQSDMKKLVA 304
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG+F++ I ++GA++QMISH IS AMF++IG LY+
Sbjct: 305 YSSIAHMGFVTLGMFLVYSIVAKTGDTQGAALGMEGAMVQMISHGFISGAMFLAIGVLYD 364
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ TR IS +GG++N +P F F ++F++AN LPGTSGF+GEFM+ILSA K N G+L
Sbjct: 365 RLHTRDISAYGGVVNTMPWFGFFAVLFAMANAGLPGTSGFVGEFMVILSAFKANVWYGIL 424
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI AAY+L + K ++F
Sbjct: 425 AATTLIVGAAYTLWMIKRVVF 445
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 113/209 (54%), Gaps = 22/209 (10%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL ITA + FL + K FP+HTWLPD+ +E PT A +++ AA M+ G +
Sbjct: 202 PLGITAQILIFLAFLVAFAVKIPMFPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGGYGFV 260
Query: 89 RMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV 146
R S P+ ++ L +I+ + I ++G + +IQ+D+K+++AYS+++ +G++T+G+ +
Sbjct: 261 RFSLPITPDASATLDWLIILLSLIAIVYIGFIALIQSDMKKLVAYSSIAHMGFVTLGMFL 320
Query: 147 SAYTV----------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLY 190
Y++ ++ +++H F +FL+ G ++ + H +DI GG+
Sbjct: 321 -VYSIVAKTGDTQGAALGMEGAMVQMISHGFISGAMFLAIG-VLYDRLHTRDISAYGGVV 378
Query: 191 KYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ G P SGF +
Sbjct: 379 NTMPWFGFFAVLFAMANAGLPGTSGFVGE 407
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 130/284 (45%), Gaps = 23/284 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
A +K+F+ L S FM +Y G+ F+++ + + + A L L +V
Sbjct: 164 ATMKFFLYTFLGSVFMFIAFLYMYFQIGS------FSILDFHAMPLGITAQILIFLAFLV 217
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVII-YRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + A +++L+ K+ + + + L I ++W
Sbjct: 218 AFAVKIPMFPVHTWLPDAHVEAPTAGSVVLAAIMLKMGGYGFVRFSLPITPDASATLDWL 277
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIKTSHNNLI 800
ILL L + IG + A+ Q + K+++AYSSIAHMG +++SI++ KT
Sbjct: 278 IILLSLIA-IVYIGFI-ALIQSDMKKLVAYSSIAHMGFVTLGMFLVYSIVA-KTGDTQGA 334
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ + +I++ F F I +L + T ++ + G+ PW ++F
Sbjct: 335 ALG-MEGAMVQMISHGFISGAMFLAIGVLYDRL--HTRDISAYGGVVNTMPWFGFFAVLF 391
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+ AG P T GF +F + F+ +W +L ++GA
Sbjct: 392 AMANAGLPGTSGFVGEFMVILSAFKA-NVWYGILAATTLIVGAA 434
>gi|254455716|ref|ZP_05069145.1| NADH dehydrogenase i chain m [Candidatus Pelagibacter sp. HTCC7211]
gi|207082718|gb|EDZ60144.1| NADH dehydrogenase i chain m [Candidatus Pelagibacter sp. HTCC7211]
Length = 493
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/375 (54%), Positives = 287/375 (76%), Gaps = 5/375 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFIT-LIIILISLDIKKKLAEYMSAFLILSGL 279
+ + WI+ F I Y +G+DG+S+ FI LT FIT L II ++ +KK+L +++ A LIL
Sbjct: 66 EDRTWIEGF-INYKVGVDGISILFIILTTFITPLCIISVNNSVKKRLRDFLIAILILESF 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD ++FY+FFEA LIP+F+IIG WGG R Y+A KFFLYTL+GS+LML+++I
Sbjct: 125 MIGVFCALDLVVFYLFFEAGLIPMFLIIGIWGGPKRVYSAFKFFLYTLLGSVLMLVAIIS 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+IS + +++ ++L I Q L++ FF +FA+K P+WP+HTWLPDAHVEAPT GS
Sbjct: 185 IYWISGTT-DVIKLYELGIDAKYQNLLWLAFFSSFAVKTPMWPVHTWLPDAHVEAPTAGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+ YG +RFSL +FP AS F+ LI LS+I+II SLIA++Q D+KKLIA
Sbjct: 244 VLLAAILLKMAGYGFIRFSLGLFPIASEVFTPLIYALSVIAIIVTSLIALMQEDMKKLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVTLG+F + + I+G+IIQMISH L+S+A+F+ +G +Y++M +RLIS++GG
Sbjct: 304 YSSVAHMGFVTLGVFTIQQQGIEGSIIQMISHGLVSAALFLCVGVVYDRMHSRLISSYGG 363
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
I+ +IP +S+ F+IF+LA LPGTSGF+GEF+I+++ K NF + VL S +I AAY
Sbjct: 364 IVTIIPKYSILFMIFTLAALGLPGTSGFVGEFLILMAVFKDNFLVAVLASIGVILGAAYM 423
Query: 580 LCLSKNIIFVLGQMI 594
L L K +IF G++I
Sbjct: 424 LWLYKRVIF--GKLI 436
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 100/178 (56%), Gaps = 12/178 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K+ +P+HTWLPD+ +E PT S L+ A + AG I LF +++ + +++
Sbjct: 221 KTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFIRFSLGLFPIASEVFTPLIYAL 280
Query: 109 AITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
++ A + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ SI +++H
Sbjct: 281 SVIAIIVTSLIALMQEDMKKLIAYSSVAHMGFVTLGVFTIQQQGIEG---SIIQMISHGL 337
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G ++ + H++ I + GG+ +P I +I L+ +G P SGF +
Sbjct: 338 VSAALFLCVG-VVYDRMHSRLISSYGGIVTIIPKYSILFMIFTLAALGLPGTSGFVGE 394
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 22/259 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
+A K+F+ +L S ML I +Y I+GT + VIKL + +LL +
Sbjct: 163 SAFKFFLYTLLGSVLMLVAIISIYWISGTTD------VIKLYELGIDAKYQNLLWLAFFS 216
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVIN-WQ 746
SF K + P H W+PD + A ++LL+ K++ + I L L P+ +
Sbjct: 217 SFAVKTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFIRFSL--GLFPIASEVFT 274
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ L++ ++I+ ++ A+ Q + K++IAYSS+AHMG + + +I+ I
Sbjct: 275 PLIYALSVIAIIVTSLIALMQEDMKKLIAYSSVAHMGFVTLGVFTIQQQGIEGSIIQMIS 334
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
GL A+ GV+ ++ + + G+ P +++ MIF + G
Sbjct: 335 HGLVSA-----ALFLCVGVVYDRMHSRLISS-----YGGIVTIIPKYSILFMIFTLAALG 384
Query: 867 FPPTIGFYAKFFIFEKIFE 885
P T GF +F I +F+
Sbjct: 385 LPGTSGFVGEFLILMAVFK 403
>gi|160872076|ref|ZP_02062208.1| NADH-quinone oxidoreductase, m subunit [Rickettsiella grylli]
gi|159120875|gb|EDP46213.1| NADH-quinone oxidoreductase, m subunit [Rickettsiella grylli]
Length = 514
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/378 (52%), Positives = 275/378 (72%), Gaps = 14/378 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI ++I+Y LG+DG+SL I LT F TL++IL + IK ++A+YM+AFL++ G+++G
Sbjct: 78 WITVYHIHYALGVDGISLPLILLTVFTTLLVILAAWHSIKLRVAQYMAAFLLMQGMMVGT 137
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-YY 342
F + D +LFY+F+EA LIP+++ IG WG NRSYA+IKFFLYT GS LMLI+++YL +
Sbjct: 138 FASTDSILFYVFWEAILIPMYLSIGVWGSDNRSYASIKFFLYTFFGSALMLIALLYLGVH 197
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
F I ++ L + QIW+F+ F IAFA+KIP+WP HTWLPDAH EAP GSV+L
Sbjct: 198 NPEHDFLIAHFYPLPLGLSAQIWIFVAFLIAFAVKIPMWPFHTWLPDAHTEAPAGGSVVL 257
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
AA+MLKLG YG LRF+LPI PDAS + L+I L+LI+I+YI +A+ QID+K+LIAYSS
Sbjct: 258 AALMLKLGGYGFLRFTLPIVPDASRLLAGLMIVLALIAIVYIGFVALAQIDMKRLIAYSS 317
Query: 463 IAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYNQMK 510
IAHMGFV LG FML I S++GA++QMISHA S AMF+++G L + +
Sbjct: 318 IAHMGFVVLGCFMLFAIMKQSHNTLMAYMSLEGAMVQMISHAFSSGAMFLAVGMLAYRFR 377
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
+RLI ++GG+ +P + FF++FS++N LPGTSGF+GEFMIILSA++ +F I + +T
Sbjct: 378 SRLIKDYGGLATSMPLLASFFMLFSMSNLGLPGTSGFVGEFMIILSAMQASFWITAIAAT 437
Query: 571 ALIFSAAYSLCLSKNIIF 588
LI SA Y+L + K I F
Sbjct: 438 TLILSATYTLYMYKRIFF 455
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 127/267 (47%), Gaps = 32/267 (11%)
Query: 629 SEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI-- 686
S A+IK+F+ S ML I++LY G + F + + + A + +
Sbjct: 170 SYASIKFFLYTFFGSALML--IALLY--LGVHNPEHDFLIAHFYPLPLGLSAQIWIFVAF 225
Query: 687 IVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV 742
++ + K+ + PFH W+PD + G S+++ L+ ++ LP+V
Sbjct: 226 LIAFAVKIPMWPFHTWLPDAHTEAPAGGSVVLAALMLKLGGYGF--------LRFTLPIV 277
Query: 743 INWQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISI 792
+ ++L ++LA+ +++ A+ Q + KR+IAYSSIAHMG MLF+I +
Sbjct: 278 PDASRLLAGLMIVLALIAIVYIGFVALAQIDMKRLIAYSSIAHMGFVVLGCFMLFAI--M 335
Query: 793 KTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPW 852
K SHN L+ + S + + +I++ F+ F + +L ++ + + GL P
Sbjct: 336 KQSHNTLMAYMSLEGAMVQMISHAFSSGAMFLAVGMLAYRF--RSRLIKDYGGLATSMPL 393
Query: 853 CALIMMIFMFSLAGFPPTIGFYAKFFI 879
A M+F S G P T GF +F I
Sbjct: 394 LASFFMLFSMSNLGLPGTSGFVGEFMI 420
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 109/215 (50%), Gaps = 18/215 (8%)
Query: 22 LIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVT 81
LI +Y PL ++A + F+ I K +P HTWLPD+ +++ AA M+
Sbjct: 204 LIAHFYPLPLGLSAQIWIFVAFLIAFAVKIPMWPFHTWLPDAHTEAPAGGSVVLAALMLK 263
Query: 82 AGIFMITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGY 139
G + R + P+ ++ L+ ++ + A+ A ++G + + Q D+KR+IAYS+++ +G+
Sbjct: 264 LGGYGFLRFTLPIVPDASRLLAGLMIVLALIAIVYIGFVALAQIDMKRLIAYSSIAHMGF 323
Query: 140 MTVG---------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIR 184
+ +G + + ++ +++HAF +FL+ G + + ++ I+
Sbjct: 324 VVLGCFMLFAIMKQSHNTLMAYMSLEGAMVQMISHAFSSGAMFLAVGMLAYRFR-SRLIK 382
Query: 185 NMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ GGL MP+ ++ +S +G P SGF +
Sbjct: 383 DYGGLATSMPLLASFFMLFSMSNLGLPGTSGFVGE 417
>gi|389774732|ref|ZP_10192851.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter
spathiphylli B39]
gi|388438331|gb|EIL95086.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter
spathiphylli B39]
Length = 502
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/381 (50%), Positives = 277/381 (72%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ +WI + ++Y L +DG+S+ I +T F+ +++I+ + + I+ K +YM+A L+L GL
Sbjct: 64 ESHLWIASWGVHYGLAVDGISVALIVMTTFVGILVIVGAWEVIQDKPHQYMAAMLMLEGL 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCA D +LFY FEA LIP+FI+IG WGG R YA +KFF+YT GS+ MLI+++Y
Sbjct: 124 LIGVFCATDALLFYALFEAILIPMFILIGIWGGPRRVYATLKFFIYTFFGSVFMLIALLY 183
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++ +F++ + L +T EQ W+F F IAFAIK+P+ P+HTWLPDAHVEAPT GS
Sbjct: 184 LYQKAH-TFDLATLAALPLTFREQAWIFFAFLIAFAIKVPMVPVHTWLPDAHVEAPTGGS 242
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAA+MLK+G YG+LRF LPI PDA +F+ +II LSL++++YI +A+VQ D+KKL+A
Sbjct: 243 VVLAAVMLKVGTYGMLRFILPIVPDAGAHFAWIIIVLSLVAVVYIGYVALVQEDMKKLVA 302
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSS+AHMGFVTLGIF+ + + +QGA+IQMISH +S AMF IG +Y+
Sbjct: 303 YSSVAHMGFVTLGIFIAFALVREQGNTDMALVGMQGAMIQMISHGFVSGAMFTCIGVMYD 362
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ TR I ++GG+INV+P F F+++F++ANC LPGTSGF+GEFM+IL++ N I +
Sbjct: 363 RLHTRAIKDYGGVINVMPWFGFFYVLFAMANCGLPGTSGFVGEFMVILASFSANPWIALF 422
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+ LI A Y+L L K +++
Sbjct: 423 AAFTLIIGAGYTLWLVKRVLW 443
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR-MSPLFELSNTALS-IILF 106
K P+HTWLPD+ +E PT S ++ AA M+ G + + R + P+ + + II+
Sbjct: 220 KVPMVPVHTWLPDAHVEAPTGGSVVL-AAVMLKVGTYGMLRFILPIVPDAGAHFAWIIIV 278
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------- 151
+ + ++G + ++Q D+K+++AYS+++ +G++T+G+ ++ V
Sbjct: 279 LSLVAVVYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFIAFALVREQGNTDMALVGMQG 338
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I++ GG+ MP ++ ++ G P
Sbjct: 339 AMIQMISHGFVSGAMFTCIG-VMYDRLHTRAIKDYGGVINVMPWFGFFYVLFAMANCGLP 397
Query: 212 FFSGFYSK-------DKKKIWIDYFNIYYFLGIDGLSLWFI 245
SGF + WI F + + G +LW +
Sbjct: 398 GTSGFVGEFMVILASFSANPWIALFAAFTLIIGAGYTLWLV 438
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 125/285 (43%), Gaps = 27/285 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A +K+FI S FML + LY T +L ++ + + A ++
Sbjct: 162 ATLKFFIYTFFGSVFMLIALLYLYQKAHTFDLATLAAL----PLTFREQAWIFFAFLIAF 217
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV---- 742
+ K+ + P H W+PD + G S+++ ++ L V Y +L + +LP+V
Sbjct: 218 AIKVPMVPVHTWLPDAHVEAPTGGSVVLAAVM-------LKVGTYGML-RFILPIVPDAG 269
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----SIKTSHNN 798
++ I+++L++ +++ A+ Q + K+++AYSS+AHMG + I ++ N
Sbjct: 270 AHFAWIIIVLSLVAVVYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFIAFALVREQGNT 329
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+ + +I++ F F I ++ + T + + G+ PW +
Sbjct: 330 DMALVGMQGAMIQMISHGFVSGAMFTCIGVMYDRL--HTRAIKDYGGVINVMPWFGFFYV 387
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
+F + G P T GF +F + F W+ L +IGA
Sbjct: 388 LFAMANCGLPGTSGFVGEFMVILASFSANP-WIALFAAFTLIIGA 431
>gi|150396125|ref|YP_001326592.1| NADH dehydrogenase subunit M [Sinorhizobium medicae WSM419]
gi|150027640|gb|ABR59757.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium medicae WSM419]
Length = 503
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/369 (51%), Positives = 276/369 (74%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K+ W+ I Y LG+DG+S+ F+PLTAF+ +L S + I+K+L EYM AFLIL L
Sbjct: 68 EKREWLGA-GISYHLGVDGISILFVPLTAFLMPFCVLASWVTIEKRLKEYMIAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL+GS+LML++M+
Sbjct: 127 MLGVFVSLDIILFYVFFEAGLIPMFIIIGVWGGKERVYASYKFFLYTLLGSVLMLLAMMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITQLLAYQFPRQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LKLG YG LRFSLP+FP AS +F+ + TLS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFTLSVIAIIYTSLVAMMQTDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+G F +QGAI QM+SH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGTFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F++F++AN LPGTSGF+GE + ++ A + N + + ++ +I SAAY+
Sbjct: 366 LVNNMPKYAVAFMVFTMANVGLPGTSGFVGEVLTLVGAFRANTWVALFATSGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q DIK++IAYS+++ +GY+T+G V +IF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGF 393
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ + + + L
Sbjct: 165 ASYKFFLYTLLGSVLMLLAMMAMYWQAGTTDITQLLAYQFPRQMQTWLW----LAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
+ K+ + P H W+PD + G+ I+ +LL KL + + L + PL ++
Sbjct: 221 AVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KLGGYGFLRFSL--PMFPLASDF 274
Query: 746 -QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ L++ ++I ++ A+ Q + K++IAYSS+AHMG + + IF
Sbjct: 275 FAPFVFTLSVIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQM 334
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
G+ + GA + + + + + T E+ + GL P A+ M+F +
Sbjct: 335 LSHGI---------VSGALFLCVGVVYDRLH-TREIAAYGGLVNNMPKYAVAFMVFTMAN 384
Query: 865 AGFPPTIGFYAK 876
G P T GF +
Sbjct: 385 VGLPGTSGFVGE 396
>gi|395779965|ref|ZP_10460433.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella washoensis 085-0475]
gi|395419715|gb|EJF86011.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella washoensis 085-0475]
Length = 498
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/417 (49%), Positives = 296/417 (70%), Gaps = 20/417 (4%)
Query: 178 KHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFN-----IY 232
+HN IRN+ L + I SLI ++GF + ++ FN I
Sbjct: 41 RHN--IRNVAFLTSFF--VFIISLI---------IWAGFDHTNAHFQMVEKFNWLGGGIS 87
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +G+DG+S+ F+ L+AF+ IL S + IK +L YM AFL+L +IG FCALD +L
Sbjct: 88 YHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLLLEVAVIGVFCALDAIL 147
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ + +I
Sbjct: 148 FYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMAMYW-EAGTLDIP 206
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LKLG
Sbjct: 207 TLLNYQFPAHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKLGG 266
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP AS F+ L+ TLSLI+IIY SL+A+VQ DIKKLIAYSSIAHMG+VT+
Sbjct: 267 YGFLRFSLPMFPLASADFAPLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTM 326
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF + SIQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++V F
Sbjct: 327 GIFAANEQSIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYAVVF 386
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+IF++AN LPG+SGF+GEF+ ++ + N + V +T +I SAAY+L L + ++F
Sbjct: 387 LIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVFATTGVILSAAYALYLYRRVVF 443
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPLASADFAPLVFT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ + + +I+ +++H
Sbjct: 291 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQSIQGAIYQMLSHGIVS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 351 AALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 405
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 26/265 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GTL++ ++ N + L
Sbjct: 174 ASMKFFLYTLLGSVLMLVAIMAMYWEAGTLDIPTLLN----YQFPAHMQMWLWLAFFASF 229
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKIL 749
+ K+ + P H W+PD + A +++L+ L L + + PL ++ ++
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV-LLKLGGYGFLRFSLPMFPLASADFAPLV 288
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII-----SIKTSHNNLIIFNS 804
L++ ++I ++ A+ Q + K++IAYSSIAHMG + I SI+ + ++
Sbjct: 289 FTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQSIQGAIYQMLSHGI 348
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ LF + I+ L T E+ F GL P A++ +IF +
Sbjct: 349 VSAALFLCVGVIYDRL---------------HTREISAFGGLVNNMPKYAVVFLIFTMAN 393
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKI 889
G P + GF +F +F+ K+
Sbjct: 394 VGLPGSSGFLGEFLTLIGVFQVNKL 418
>gi|451942046|ref|YP_007462683.1| NADH dehydrogenase subunit M [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901433|gb|AGF75895.1| NADH dehydrogenase subunit M [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 489
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/382 (52%), Positives = 282/382 (73%), Gaps = 7/382 (1%)
Query: 213 FSGFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
++GF KD + I+ N I Y +G+DG+S+ F+ L+AF+ IL S + +K +L
Sbjct: 54 WAGFDYKDARFQMIEKSNWLGGGISYHMGVDGISILFVVLSAFLLPFCILASWENVKDRL 113
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
YM AFL+L IIG FCALD MLFYIFFE +LIP+FIIIG WGG+ R YA+IKFFLYT
Sbjct: 114 KAYMIAFLLLEVAIIGVFCALDAMLFYIFFEGSLIPMFIIIGVWGGARRVYASIKFFLYT 173
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML++++ +Y+ + + +I + QIWL++ FF +FA+K+P+WP+HTW
Sbjct: 174 LLGSVLMLVALMAMYWKAG-TLDIPTLLTYQFPAHMQIWLWLAFFASFAVKMPMWPVHTW 232
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSVILA ++LKLG YG LRFSLP+FP AS + L+ LSLI+IIY SL
Sbjct: 233 LPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASADLALLVFILSLIAIIYTSL 292
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+VQ DIKKLIAYSSIAHMG+VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y
Sbjct: 293 VALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIY 352
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TR IS FGG++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N I V
Sbjct: 353 DRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLIVV 412
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 413 FATTGVILSAAYALYLYRRVVF 434
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 107/179 (59%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ L++++FI
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADLALLVFI 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ + L
Sbjct: 165 ASIKFFLYTLLGSVLMLVALMAMYWKAGTLDIPTLLT----YQFPAHMQIWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ ++ IL++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 273 ADLALLVFILSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P + GF +F +F+ K+
Sbjct: 383 ANVGLPGSSGFLGEFLTLIGVFQVNKL 409
>gi|328543699|ref|YP_004303808.1| proton-translocating NADH-quinone oxidoreductase, subunit M
subfamily protein [Polymorphum gilvum SL003B-26A1]
gi|326413443|gb|ADZ70506.1| Proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Polymorphum gilvum SL003B-26A1]
Length = 506
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/380 (50%), Positives = 281/380 (73%), Gaps = 9/380 (2%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEY 269
P F S+D W+ I Y +G+DG+S+ F+ LT F+ IL S + ++K++ EY
Sbjct: 62 PGFQMVESRD----WLSG-TITYKMGVDGISMLFVILTTFLMPFCILASWESVQKRVKEY 116
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFLIL L+IG FCALD ++FY+FFEA L+P+F+IIG WGG R YA+ KFFLYTL+G
Sbjct: 117 MIAFLILETLMIGVFCALDLVVFYVFFEAGLLPMFLIIGVWGGKRRVYASYKFFLYTLLG 176
Query: 330 SLLMLISMIYLYYISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLP 388
S+LMLI+++ +Y+ + + +L H + Q WL++ FF +FA+K+P+WP+HTWLP
Sbjct: 177 SVLMLIAVMAMYWEAGTTDITVLLRHPFG--ESMQTWLWLAFFASFAVKMPMWPVHTWLP 234
Query: 389 DAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
DAHVEAPT GSVILA I+LK+G YG LRFSLP+FP AS F+ L+ TLS+++I+Y SL+A
Sbjct: 235 DAHVEAPTAGSVILAGILLKMGGYGFLRFSLPMFPLASDMFAPLVFTLSVVAIVYTSLVA 294
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQ 508
+ Q DIKKLIAYSS+AHMG+VT+GIF +T +QG + QM+SH ++S A+F+ +G +Y++
Sbjct: 295 LAQEDIKKLIAYSSVAHMGYVTMGIFTMTPQGVQGGLFQMLSHGIVSGALFLCVGVIYDR 354
Query: 509 MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLT 568
M TR IS +GG++N +P ++V F+IF++AN LPGTSGF+GEF+ ++ A + N + ++
Sbjct: 355 MHTREISAYGGLVNRMPFYAVAFLIFTMANVGLPGTSGFVGEFLTLMGAFEVNTWVALIA 414
Query: 569 STALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 415 TTGVILSAAYALFLYRRVVF 434
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPLASDMFAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ + Q DIK++IAYS+++ +GY+T+G+ GV +F +++H
Sbjct: 282 LSVVAIVYTSLVALAQEDIKKLIAYSSVAHMGYVTMGIFTMTPQGVQG---GLFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREISAYGGLVNRMPFYAVAFLIFTMANVGLPGTSGFVGE 396
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 134/304 (44%), Gaps = 34/304 (11%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ Y+ E L+ + L + + K +++S K+F+ +L S ML + +Y
Sbjct: 135 DLVVFYVFFEAGLLPMFLIIGVWGGKRRVYAS---YKFFLYTLLGSVLMLIAVMAMYWEA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
GT ++ V+ + S+ L + K+ + P H W+PD + G+ I
Sbjct: 192 GTTDI----TVLLRHPFGESMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 713 IITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNF 770
+ +LL L + ++ L PLV L++ +++ ++ A+ Q +
Sbjct: 248 LAGILLKMGGYGFLRFSLPMFPLASDMFAPLVFT-------LSVVAIVYTSLVALAQEDI 300
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
K++IAYSS+AHMG + I ++ GLF ++++ F + ++
Sbjct: 301 KKLIAYSSVAHMGYVTMGIFTMTP--------QGVQGGLFQMLSHGIVSGALFLCVGVIY 352
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
+ T E+ + GL R P+ A+ +IF + G P T GF +F FE W
Sbjct: 353 DRM--HTREISAYGGLVNRMPFYAVAFLIFTMANVGLPGTSGFVGEFLTLMGAFEVNT-W 409
Query: 891 LLLL 894
+ L+
Sbjct: 410 VALI 413
>gi|398353168|ref|YP_006398632.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium fredii USDA
257]
gi|390128494|gb|AFL51875.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium fredii USDA
257]
Length = 503
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/375 (51%), Positives = 282/375 (75%), Gaps = 4/375 (1%)
Query: 215 GFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAF 273
GF +K + W+ I Y LGIDG+S+ F+PLTAF+ +L S + I+K+L EYM AF
Sbjct: 63 GFQMVEKHE-WLGT-GISYHLGIDGISVLFLPLTAFLMPFCVLASWVTIEKRLKEYMIAF 120
Query: 274 LILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLM 333
L+L L++G F +LD +LFY+FFEA LIP+FIIIG WGG +R YA+ KFFLYTL+GS+LM
Sbjct: 121 LLLETLMLGVFVSLDIVLFYVFFEAGLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLM 180
Query: 334 LISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
L++++ +Y+ + + +I + + + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+
Sbjct: 181 LLAIMAMYWQAGTT-DITELLKYNFPRQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQ 239
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LRFSLP+FP AS YF+ L+ TLS+I+IIY SL+AM+Q D
Sbjct: 240 APTAGSVILAGILLKLGGYGFLRFSLPMFPLASDYFAPLVYTLSIIAIIYTSLVAMMQTD 299
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IKKLIAYSS+AHMG+VT+G F +QGAI QM+SH ++S A+F+ +G +Y+++ TR
Sbjct: 300 IKKLIAYSSVAHMGYVTMGTFAANIQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTRE 359
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG++N +P ++V F++F++AN LPGTSGF+GE + ++ A + N + + ++ +I
Sbjct: 360 IAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGEVLTLVGAFRANTWVALFATSGVI 419
Query: 574 FSAAYSLCLSKNIIF 588
SAAY+L L + +IF
Sbjct: 420 LSAAYALWLYRRVIF 434
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASDYFAPLVYT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+I A + L+ ++Q DIK++IAYS+++ +GY+T+G + +IF +++H
Sbjct: 282 LSIIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANIQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 110/261 (42%), Gaps = 31/261 (11%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
K+ +++S K+F+ +L S ML I +Y GT ++ + N +
Sbjct: 160 KDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTTDITELLKY----NFPRQMQTWL 212
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLSTTPKLSLFVIIYRLLI 735
L + K+ + P H W+PD + A S+I I L L L + ++ L
Sbjct: 213 WLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFPLAS 272
Query: 736 KCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTS 795
PLV L+I ++I ++ A+ Q + K++IAYSS+AHMG + +
Sbjct: 273 DYFAPLVYT-------LSIIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANIQ 325
Query: 796 HNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
IF G+ + GA + + + + + T E+ + GL P A+
Sbjct: 326 GVQGAIFQMLSHGI---------VSGALFLCVGVVYDRLH-TREIAAYGGLVNNMPKYAV 375
Query: 856 IMMIFMFSLAGFPPTIGFYAK 876
M+F + G P T GF +
Sbjct: 376 AFMVFTMANVGLPGTSGFVGE 396
>gi|423712682|ref|ZP_17686982.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella washoensis Sb944nv]
gi|395411475|gb|EJF77997.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella washoensis Sb944nv]
Length = 489
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/382 (52%), Positives = 283/382 (74%), Gaps = 7/382 (1%)
Query: 213 FSGFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
++GF + ++ FN I Y +G+DG+S+ F+ L+AF+ IL S + IK +L
Sbjct: 54 WAGFDHTNAHFQMVEKFNWLGGGISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRL 113
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
YM AFL+L IIG FCALD +LFY+FFE +LIP+FIIIG WGG+ R YA++KFFLYT
Sbjct: 114 KAYMIAFLLLEVAIIGVFCALDAILFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYT 173
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML++++ +Y+ + +I + Q+WL++ FF +FA+K+P+WP+HTW
Sbjct: 174 LLGSVLMLVAIMVMYW-EAGTLDIPTLLTYRFPAHMQMWLWLAFFASFAVKMPMWPVHTW 232
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSVILA ++LKLG YG LRFSLP+FP AS F+ L+ TLSLI+IIY SL
Sbjct: 233 LPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPLASADFAPLVFTLSLIAIIYTSL 292
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+VQ DIKKLIAYSSIAHMG+VT+GIF + SIQGAI QM+SH ++S+A+F+ +G +Y
Sbjct: 293 VALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQSIQGAIYQMLSHGIVSAALFLCVGVIY 352
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TR IS FGG++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N + V
Sbjct: 353 DRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFEVNKLVVV 412
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + ++F
Sbjct: 413 FATTGVILSAAYALYLYRRVVF 434
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPLASADFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ + + +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQSIQGAIYQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 342 AALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 26/265 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I ++Y GTL++ ++ + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMVMYWEAGTLDIPTLLT----YRFPAHMQMWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKIL 749
+ K+ + P H W+PD + A +++L+ L L + + PL ++ ++
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV-LLKLGGYGFLRFSLPMFPLASADFAPLV 279
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII-----SIKTSHNNLIIFNS 804
L++ ++I ++ A+ Q + K++IAYSSIAHMG + I SI+ + ++
Sbjct: 280 FTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQSIQGAIYQMLSHGI 339
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ LF + I+ L T E+ F GL P A++ +IF +
Sbjct: 340 VSAALFLCVGVIYDRL---------------HTREISAFGGLVNNMPKYAVVFLIFTMAN 384
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKI 889
G P + GF +F +FE K+
Sbjct: 385 VGLPGSSGFLGEFLTLIGVFEVNKL 409
>gi|344342332|ref|ZP_08773203.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Marichromatium purpuratum 984]
gi|343805668|gb|EGV23563.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Marichromatium purpuratum 984]
Length = 525
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/381 (51%), Positives = 283/381 (74%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI F++YY LG+DG+S+ I LT FIT+ +++ + I K ++YM+AFLI+ G+
Sbjct: 65 ERVAWIPTFDVYYALGVDGISMPLIILTTFITIFVVIAGWEVISYKPSQYMAAFLIMEGV 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+F+EA LIP+FIIIG WGG NR YA IKFF+YT GS+ ML+++IY
Sbjct: 125 MIGVFSALDAVLFYVFWEAMLIPMFIIIGVWGGPNRVYATIKFFIYTFFGSVFMLVALIY 184
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ ++ SF+IL +H L + Q +FI F +AFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 185 MYFQAD-SFSILDFHGLELGMTAQTLIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFS+PI PDAS + LII +SLI+++YI +A+ Q D+KKLIA
Sbjct: 244 VVLAAIMLKIGGYGFLRFSMPIAPDASAALAWLIIAMSLIAVVYIGFVALAQRDMKKLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLG F++ I ++G ++QMISH IS A+F+ +G LY+
Sbjct: 304 YSSIAHMGFVTLGFFIVFAIVQNSTAGAGAVMGVEGGMVQMISHGFISGALFLCVGVLYD 363
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ +R I+++GG++N +P F FF+ F++AN LPGTSGF+GEFM+IL+ + NF +L
Sbjct: 364 RVHSREIADYGGVVNTMPWFGAFFVYFAMANSGLPGTSGFVGEFMVILATFRANFWWALL 423
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI +AAY+L + K ++F
Sbjct: 424 AATTLILAAAYTLWMIKRVVF 444
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 31 LAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR 89
L +TA F+ + K FP+HTWLPD+ +E PT S ++ AA M+ G + R
Sbjct: 202 LGMTAQTLIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGSVVL-AAIMLKIGGYGFLR 260
Query: 90 MS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL--- 144
S P+ ++ AL+ +I+ + I ++G + + Q D+K++IAYS+++ +G++T+G
Sbjct: 261 FSMPIAPDASAALAWLIIAMSLIAVVYIGFVALAQRDMKKLIAYSSIAHMGFVTLGFFIV 320
Query: 145 ------------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
V + +++H F LFL G ++ + H+++I + GG+
Sbjct: 321 FAIVQNSTAGAGAVMGVEGGMVQMISHGFISGALFLCVG-VLYDRVHSREIADYGGVVNT 379
Query: 193 MP 194
MP
Sbjct: 380 MP 381
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 137/300 (45%), Gaps = 31/300 (10%)
Query: 605 YLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLEL 662
Y+ E M + + ++I N ++ A IK+FI S FML + +Y +
Sbjct: 138 YVFWEAMLIPMFIIIGVWGGPNRVY---ATIKFFIYTFFGSVFMLVALIYMY-----FQA 189
Query: 663 QSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY----QGASIIITL 716
S F+++ + + + A +L+ I L+F K+ + P H W+PD + G S+++
Sbjct: 190 DS-FSILDFHGLELGMTAQTLIFIAFLLAFAVKVPMFPVHTWLPDAHVEAPTGGSVVLAA 248
Query: 717 LLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
++ + + + I + W +++ +++ +++ A+ Q + K++IAY
Sbjct: 249 IMLKIGGYGF--LRFSMPIAPDASAALAW--LIIAMSLIAVVYIGFVALAQRDMKKLIAY 304
Query: 777 SSIAHMGLM------LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
SSIAHMG + +F+I+ T+ ++ + G+ +I++ F F + +L
Sbjct: 305 SSIAHMGFVTLGFFIVFAIVQNSTAGAGAVM--GVEGGMVQMISHGFISGALFLCVGVLY 362
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
+ ++ E+ + G+ PW + F + +G P T GF +F + F W
Sbjct: 363 DRVHSR--EIADYGGVVNTMPWFGAFFVYFAMANSGLPGTSGFVGEFMVILATFRANFWW 420
>gi|407974315|ref|ZP_11155224.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor indicus
C115]
gi|407430004|gb|EKF42679.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor indicus
C115]
Length = 505
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/442 (47%), Positives = 302/442 (68%), Gaps = 12/442 (2%)
Query: 180 NQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDG 239
++IRN+ L T T ++ L G S + +K W+ I Y +G+DG
Sbjct: 32 RRNIRNVALL-----TTVFTFVLSLFIWAGFDASSPGFQMVEKSEWLGS-GISYHMGVDG 85
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+S+ F+ LT F+ IL S + I+ ++ EYM AFLIL L+IG FCALD +LFY+FFEA
Sbjct: 86 ISMLFVILTTFLMPFCILASWEAIEHRVKEYMIAFLILETLMIGVFCALDIVLFYVFFEA 145
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWHQLS 357
LIP+FIIIG WGG R YA+ KFFLYTL+GS+LML++M+ +Y+ + + L H
Sbjct: 146 GLIPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAMMAMYWQAGTTDIPALLTHVFP 205
Query: 358 ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRF 417
+ Q WL+ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G YG LRF
Sbjct: 206 VGM--QYWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRF 263
Query: 418 SLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLT 477
SLP+FP AS + L+ TLS+++IIY SL+A++Q DIKKLIAYSS+AHMGFVT+GIF +
Sbjct: 264 SLPMFPVASMDLAPLVFTLSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAMN 323
Query: 478 KISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ +QGAI QM+SH L+S A+F+ +G +Y++M TR I+ +GG++N +P ++ F+IF++A
Sbjct: 324 QQGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMPKYATVFMIFTMA 383
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMIS 597
N LPGTSGF+GEF+ +L+ + N I + +T +I SAAY+L L + ++F G + S
Sbjct: 384 NVGLPGTSGFVGEFLTLLAVFEVNTWIALFAATGVILSAAYALWLYRRVVF--GALTKES 441
Query: 598 GNNLLSIYLGLELMSLTLCVLI 619
LL + +L+ L VL+
Sbjct: 442 LKGLLDLSAREKLILYPLVVLV 463
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ L+ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPVASMDLAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q DIK++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAMNQQGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP +I ++ VG P SGF +
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREIAAYGGLVNNMPKYATVFMIFTMANVGLPGTSGFVGE 396
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 29/270 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ ++ + + +
Sbjct: 165 ASFKFFLYTLLGSVLMLLAMMAMYWQAGTTDIPALLTHVFPVGMQYWLW----FAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ + L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRFSLPMFPVASMDLAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 281 T-------LSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAMNQQGVQGAIFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + GA + + + + + T E+ + GL P A + MIF +
Sbjct: 334 MLSHGL---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNNMPKYATVFMIFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
G P T GF +F +FE W+ L
Sbjct: 384 NVGLPGTSGFVGEFLTLLAVFEVNT-WIAL 412
>gi|304391414|ref|ZP_07373356.1| NADH-quinone oxidoreductase subunit m [Ahrensia sp. R2A130]
gi|303295643|gb|EFL90001.1| NADH-quinone oxidoreductase subunit m [Ahrensia sp. R2A130]
Length = 506
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/394 (50%), Positives = 281/394 (71%), Gaps = 2/394 (0%)
Query: 196 TCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
TC+T L+ L G + +K WI I Y +G+DG+S+ F+ LT F+
Sbjct: 43 TCLTFLVSLGIWAGFDNSRADFQFVEKVEWISEGGIAYHMGVDGISMLFVILTTFLMPFC 102
Query: 256 ILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
IL S D I+ ++ EYM AFL+L L+IG FC+LD +LFY+FFEA LIP+FIIIG WGG
Sbjct: 103 ILASWDAIQHRVREYMIAFLLLETLMIGVFCSLDIVLFYVFFEAGLIPMFIIIGVWGGQR 162
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAF 374
R YA++KFFLYTL+GS+LML++++ +Y+ + + +I + Q WL++ FF +F
Sbjct: 163 RVYASMKFFLYTLLGSVLMLLAIMAMYWQAGTT-DIPTLLAYDFPADMQTWLWLAFFASF 221
Query: 375 AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLII 434
A+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G YG LRFSLP+FP AS N +
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRFSLPMFPLASDTMQNFVF 281
Query: 435 TLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALI 494
LS+I+IIY SL+A++Q DIKKLIAYSS+AHMG+VT+GIF IQGAI QM++H L+
Sbjct: 282 ALSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGYVTMGIFTANVQGIQGAIFQMLAHGLV 341
Query: 495 SSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
S A+F+ +G +Y++M TR I+ +GG++N +P ++V F+IF++AN LPGT+GF+GEF+ +
Sbjct: 342 SGALFLCVGVVYDRMHTREIAAYGGLVNNMPKYAVAFLIFTMANVGLPGTAGFVGEFLTL 401
Query: 555 LSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
L A + N + + + +I SAAY+L L + ++F
Sbjct: 402 LGAFQANTWVAIFATLGVILSAAYALWLYRRVVF 435
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L S+T + +
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPLASDTMQNFVFA 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q DIK++IAYS+++ +GY+T+G+ V +IF ++ H
Sbjct: 283 LSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGYVTMGIFTANVQGIQGAIFQMLAHGLVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + LI ++ VG P +GF +
Sbjct: 343 GALFLCVG-VVYDRMHTREIAAYGGLVNNMPKYAVAFLIFTMANVGLPGTAGFVGE 397
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 34/265 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GT ++ ++ + + L
Sbjct: 166 ASMKFFLYTLLGSVLMLLAIMAMYWQAGTTDIPTLLA----YDFPADMQTWLWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTP----KLSLFVIIYRLLIKCLLPL 741
+ K+ + P H W+PD + G+ I+ +LL + SL + PL
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRFSL----------PMFPL 271
Query: 742 VIN-WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+ Q + L++ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 272 ASDTMQNFVFALSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGYVTMGIFTANVQGIQGA 331
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF GL + GA + + + + + T E+ + GL P A+ +IF
Sbjct: 332 IFQMLAHGL---------VSGALFLCVGVVYDRMH-TREIAAYGGLVNNMPKYAVAFLIF 381
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 382 TMANVGLPGTAGFVGEFLTLLGAFQ 406
>gi|319782994|ref|YP_004142470.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317168882|gb|ADV12420.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 501
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/376 (52%), Positives = 279/376 (74%), Gaps = 4/376 (1%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
SGF +K W+D I Y +G+DG+S+ F+ LT F+ + IL S + I+K++ YM A
Sbjct: 62 SGFQFVEKVA-WLDS-GISYHMGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMIA 119
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L L+IG FCALD +LFY+FFEA LIP+FIIIG WGG R YA+ KFFLYTL GS+L
Sbjct: 120 FLLLETLMIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVL 179
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++++ +++ S + +I + + Q WL++ FF +FA+K+P+WP+HTWLPDAHV
Sbjct: 180 MLLAIMAMFFQSGTT-DIPTLLTHNFPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHV 238
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSVILA I+LK+G YGLLRFSLP+FP AS F+ L+ LS+++IIY SL+A++Q
Sbjct: 239 EAPTAGSVILAGILLKMGGYGLLRFSLPMFPLASEMFAPLVFALSVVAIIYTSLVALMQE 298
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSS+AHMGFVT+GIF + + +QGAI QM+SH L+S A+F+ +G +Y++M TR
Sbjct: 299 DMKKLIAYSSVAHMGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTR 358
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG++N +P ++ F+IF++AN LPGTSGF+GEF+ +L + N + +T +
Sbjct: 359 EIAAYGGLVNNMPKYATVFLIFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGV 418
Query: 573 IFSAAYSLCLSKNIIF 588
I SAAY+L L + +IF
Sbjct: 419 ILSAAYALWLYRRVIF 434
Score = 89.7 bits (221), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGLLRFSLPMFPLASEMFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP LI ++ VG P SGF +
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREIAAYGGLVNNMPKYATVFLIFTMANVGLPGTSGFVGE 396
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 115/262 (43%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML I ++ +GT ++ ++ +N ++ L
Sbjct: 165 ASFKFFLYTLAGSVLMLLAIMAMFFQSGTTDIPTLLT----HNFPANMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L + PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGLLRFSLPMFPLASEMFAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++ IF
Sbjct: 281 A-------LSVVAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAMNQEGVQGAIFQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + GA + + + + + T E+ + GL P A + +IF +
Sbjct: 334 MLSHGL---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNNMPKYATVFLIFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F +F
Sbjct: 384 NVGLPGTSGFVGEFLTMLGVFR 405
>gi|182679340|ref|YP_001833486.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Beijerinckia indica subsp. indica ATCC 9039]
gi|182635223|gb|ACB95997.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Beijerinckia indica subsp. indica ATCC 9039]
Length = 507
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/369 (52%), Positives = 278/369 (75%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++K W + Y LG+DG+S+ F+ LTAF+ IL S + I+ ++ EYM AFLIL L
Sbjct: 68 EEKSWFG-LGLVYKLGVDGMSIPFLVLTAFLMPFCILASWESIQTRVKEYMVAFLILESL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE +LIP+F+IIG WGG R YA+ KFFLYTL+GSLLML++++
Sbjct: 127 LLGVFTALDTILFYLFFEGSLIPMFLIIGIWGGPRRIYASFKFFLYTLVGSLLMLLAVMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y I+ + +I + + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MYGIAGTT-DITVLLKTAFPASMQKWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LK+G YG +RFSLP+FP+AS YF+ L+ LS+I+IIY SL+A+VQ DIKKLIA
Sbjct: 246 VILAGILLKMGGYGFIRFSLPMFPEASAYFAPLVFALSVIAIIYTSLVALVQNDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+G+F +T+ +QGAI QM+SH +++SA+F+ +G +Y+++ TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGLFSMTEQGVQGAIFQMVSHGIVASALFLCVGVVYDRLHTRDIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
I+ +P + F+IF++AN LPGTSGFIGEF+ ++ + N + + +T +IFSAAY+
Sbjct: 366 IVERMPRYGTAFMIFTMANVGLPGTSGFIGEFLTMIGTFQINSTVVLFAATGVIFSAAYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LYLYRRVLF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRFSLPMFPEASAYFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +G++T+GL GV +IF +++H
Sbjct: 282 LSVIAIIYTSLVALVQNDIKKLIAYSSVAHMGFVTMGLFSMTEQGVQG---AIFQMVSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + H +DI GG+ + MP +I ++ VG P SGF
Sbjct: 339 IVASALFLCVG-VVYDRLHTRDIAAYGGIVERMPRYGTAFMIFTMANVGLPGTSGF 393
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ ++ S ML + +YGI GT ++ V+ S+ L
Sbjct: 165 ASFKFFLYTLVGSLLMLLAVMAMYGIAGTTDI----TVLLKTAFPASMQKWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A +++L+ I+ ++ I+ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFIRFSLPMFPEAS 272
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG + + S+ IF
Sbjct: 273 AYFAPLVFALSVIAIIYTSLVALVQNDIKKLIAYSSVAHMGFVTMGLFSMTEQGVQGAIF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + + +F +G ++ + + T ++ + G+ +R P MIF
Sbjct: 333 QMVSHGI--VASALFLCVG----VVYDRLH----TRDIAAYGGIVERMPRYGTAFMIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 383 ANVGLPGTSGFIGEFLTMIGTFQ 405
>gi|344923527|ref|ZP_08776988.1| NADH dehydrogenase subunit M [Candidatus Odyssella thessalonicensis
L13]
Length = 515
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/396 (51%), Positives = 287/396 (72%), Gaps = 6/396 (1%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
+ +T ++ LL VG P +G Y + + WI NI Y +G+DG S+ FI L+ F+ +
Sbjct: 44 SILTFVLSLLIFVGFDPMKTG-YQFVEHRTWIKGMNISYRIGVDGFSILFILLSTFLMPL 102
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
IL S + I++++ EYM AFL L L+IG FCALD +LFY+FFE LIP+F+IIG WGG
Sbjct: 103 CILASWEAIQRRVREYMLAFLFLETLMIGMFCALDLVLFYVFFEGVLIPMFLIIGIWGGE 162
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLY-YISNKSFNILSWHQLSITKIEQIWLFITFFI 372
R Y++ KFFLYT +GS+ ML+++I +Y + +S H S + Q WL++ FF
Sbjct: 163 RRIYSSFKFFLYTFLGSVFMLLAIIAIYMQVGTTDLMGVSNHTFSASL--QHWLWLAFFA 220
Query: 373 AFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNL 432
+FA+KIP+WP+HTWLPDAHVEAPT GSVILA ++LK+G YG LRFS+P+FP+AS F+
Sbjct: 221 SFAVKIPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFSVPLFPEASLTFAPY 280
Query: 433 IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHA 492
++ LS+I++IY SL+A+VQ D+KKLIAYSS+AHMGFVTLGIF+LT +I GA+IQM+SH
Sbjct: 281 VMALSVIAVIYTSLVALVQKDMKKLIAYSSVAHMGFVTLGIFVLTSQAITGAMIQMLSHG 340
Query: 493 LISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFM 552
LIS+A+F+ +G +Y+++ TR IS +GG+ V+P +++FF++F+LA+ LPGTSGF+GEF+
Sbjct: 341 LISAALFLCVGVVYDRLHTRDISRYGGVAAVMPLYALFFMLFTLASVGLPGTSGFVGEFL 400
Query: 553 IILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+IL K + L + +I AAY L L + IIF
Sbjct: 401 VILGTFKISPVFATLAAVGMILGAAYGLWLYRRIIF 436
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S PLF E S T ++
Sbjct: 225 KIPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSVPLFPEASLTFAPYVMA 283
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ +G++T+G+ V A T ++ +++H
Sbjct: 284 LSVIAVIYTSLVALVQKDMKKLIAYSSVAHMGFVTLGIFVLTSQAITGAMIQMLSHGLIS 343
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G ++ + H +DI GG+ MP+ + ++ L+ VG P SGF +
Sbjct: 344 AALFLCVG-VVYDRLHTRDISRYGGVAAVMPLYALFFMLFTLASVGLPGTSGFVGE 398
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 21/298 (7%)
Query: 595 MISGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISI 652
M +L+ Y+ E L+ + L + I + I+SS K+F+ L S FML I
Sbjct: 132 MFCALDLVLFYVFFEGVLIPMFLIIGIWGGERRIYSS---FKFFLYTFLGSVFMLLAIIA 188
Query: 653 LYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASI 712
+Y GT +L + N + + S+ L + K+ + P H W+PD + A
Sbjct: 189 IYMQVGTTDLMGVSN----HTFSASLQHWLWLAFFASFAVKIPMWPVHTWLPDAHVEAPT 244
Query: 713 IITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFK 771
+++L+ K+ + + R + + + ++ L++ ++I ++ A+ Q + K
Sbjct: 245 AGSVILAGVLLKMGGYGFL-RFSVPLFPEASLTFAPYVMALSVIAVIYTSLVALVQKDMK 303
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
++IAYSS+AHMG + I + + + GL I +F +G
Sbjct: 304 KLIAYSSVAHMGFVTLGIFVLTSQAITGAMIQMLSHGL--ISAALFLCVGVV-------- 353
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
T ++ + G+ P AL M+F + G P T GF +F + F+ +
Sbjct: 354 YDRLHTRDISRYGGVAAVMPLYALFFMLFTLASVGLPGTSGFVGEFLVILGTFKISPV 411
>gi|158423304|ref|YP_001524596.1| proton-translocating NADH-quinone oxidoreductase chain M protein
[Azorhizobium caulinodans ORS 571]
gi|158330193|dbj|BAF87678.1| proton-translocating NADH-quinone oxidoreductase chain M protein
[Azorhizobium caulinodans ORS 571]
Length = 504
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/395 (49%), Positives = 286/395 (72%), Gaps = 5/395 (1%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T ++ L L G P GF +KK W+ Y+ +G+DG+SL + L+ F+
Sbjct: 43 TLVTFVVSLFLLPGFDPAAPGFQFVEKKP-WLGGIAAYH-MGVDGISLSLVILSTFLMPF 100
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
IL S D +KK++ EYM FL+L L++G FCALD +LFY FFEA LIP+F+IIG WGG+
Sbjct: 101 CILASWDSVKKRVKEYMICFLVLETLMVGTFCALDLVLFYFFFEAALIPMFLIIGVWGGA 160
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIA 373
R YA+ KFFLYTL+GS+LM+++++ +Y+ + + ++ + Q Q WL++ FF +
Sbjct: 161 RRIYASFKFFLYTLLGSVLMMLAIMAMYWKAGTT-DVPTLMQYGFPAGMQTWLWLAFFAS 219
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK+G YG +RFSLP+FPDAS+ F+ L+
Sbjct: 220 FAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFIRFSLPMFPDASHLFAPLV 279
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHAL 493
TLS+++IIY SL+AMVQ DIKKLIAYSSIAHMGFVT+G+F + + +QGA+ MISH
Sbjct: 280 YTLSVVAIIYTSLVAMVQEDIKKLIAYSSIAHMGFVTMGLFSMNEAGLQGAMFLMISHGF 339
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+S A+F+ +G +Y++M TR I+ +GG++ +P ++V ++F++AN LPGTSGF+GEF+
Sbjct: 340 VSGALFLCVGVIYDRMHTREIAAYGGLVKRMPLYAVAMMVFTMANVGLPGTSGFVGEFLT 399
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+LSA + N + +T +I SAAY+L L +IF
Sbjct: 400 MLSAFQRNTWVAFFAATGVILSAAYALWLYWRVIF 434
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 109/193 (56%), Gaps = 15/193 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPDASHLFAPLVYT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q DIK++IAYS+++ +G++T+GL + ++F +++H F
Sbjct: 282 LSVVAIIYTSLVAMVQEDIKKLIAYSSIAHMGFVTMGLFSMNEAGLQGAMFLMISHGFVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFY------ 217
LFL G +I + H ++I GGL K MP+ + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAYGGLVKRMPLYAVAMMVFTMANVGLPGTSGFVGEFLTM 400
Query: 218 -SKDKKKIWIDYF 229
S ++ W+ +F
Sbjct: 401 LSAFQRNTWVAFF 413
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 117/259 (45%), Gaps = 22/259 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S M+ I +Y GT ++ ++ + L
Sbjct: 165 ASFKFFLYTLLGSVLMMLAIMAMYWKAGTTDVPTLMQ----YGFPAGMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ L + I+ LP+ + +
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV----LLKMGGYGFIRFSLPMFPDASHLFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ L++ ++I ++ A+ Q + K++IAYSSIAHMG + + S+ +
Sbjct: 277 PLVYTLSVVAIIYTSLVAMVQEDIKKLIAYSSIAHMGFVTMGLFSMNEA--------GLQ 328
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
+F +I++ F F + ++ + T E+ + GL +R P A+ MM+F + G
Sbjct: 329 GAMFLMISHGFVSGALFLCVGVIYDRM--HTREIAAYGGLVKRMPLYAVAMMVFTMANVG 386
Query: 867 FPPTIGFYAKFFIFEKIFE 885
P T GF +F F+
Sbjct: 387 LPGTSGFVGEFLTMLSAFQ 405
>gi|323138157|ref|ZP_08073230.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylocystis sp. ATCC 49242]
gi|322396619|gb|EFX99147.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylocystis sp. ATCC 49242]
Length = 508
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/360 (52%), Positives = 271/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
+ Y +G+DG S+ + LT FI IL S + + K++ EYM AFL+L L+IG FCALD
Sbjct: 82 GLVYKMGVDGFSMPLVLLTTFIMPFSILASWESVTKRVKEYMIAFLVLETLMIGVFCALD 141
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL GSLLMLI+++ +Y ++ +
Sbjct: 142 LVLFYLFFEGGLIPMFLIIGIWGGKRRVYASFKFFLYTLAGSLLMLIAILAMYGVAGTT- 200
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + K Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILAAI+LK
Sbjct: 201 DITVLLKTDFPKEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLK 260
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG +RFSLP+FPDAS YF+ L+ +S+I+I+Y SL+A+VQ DIKKLIAYSS+AHMG+
Sbjct: 261 MGGYGFIRFSLPMFPDASAYFAPLVYAMSVIAIVYTSLVALVQEDIKKLIAYSSVAHMGY 320
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+G+F L +QGA+ QMISH +S A+F+ +G +Y++M TR I+ +GG++N +P ++
Sbjct: 321 VTMGLFTLNPQGVQGAMFQMISHGFVSGALFLCVGVIYDRMHTREIAAYGGLVNRMPIYA 380
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++AN LPGT+GFIGEF+ ++ A K N + ++ ++ +IFSAAY+L L + ++F
Sbjct: 381 FVFMLFTMANVGLPGTTGFIGEFLSLMGAFKANSWVALIATSGVIFSAAYALYLYRRVVF 440
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F ++ + +++
Sbjct: 229 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFIRFSLPMFPDASAYFAPLVYA 287
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q DIK++IAYS+++ +GY+T+GL GV ++F +++H
Sbjct: 288 MSVIAIVYTSLVALVQEDIKKLIAYSSVAHMGYVTMGLFTLNPQGVQG---AMFQMISHG 344
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F LFL G +I + H ++I GGL MPI ++ ++ VG P +GF
Sbjct: 345 FVSGALFLCVG-VIYDRMHTREIAAYGGLVNRMPIYAFVFMLFTMANVGLPGTTGF 399
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 137/305 (44%), Gaps = 36/305 (11%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K +++S K+F+ + S ML I +YG+
Sbjct: 141 DLVLFYLFFEGGLIPMFLIIGIWGGKRRVYAS---FKFFLYTLAGSLLMLIAILAMYGVA 197
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT ++ V+ + + L + K+ + P H W+PD + A +++
Sbjct: 198 GTTDI----TVLLKTDFPKEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 253
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ ++ I+ LP+ + + ++ +++ +++ ++ A+ Q +
Sbjct: 254 LAA--------ILLKMGGYGFIRFSLPMFPDASAYFAPLVYAMSVIAIVYTSLVALVQED 305
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSS+AHMG + + ++ +F +I++ F F + ++
Sbjct: 306 IKKLIAYSSVAHMGYVTMGLFTLNP--------QGVQGAMFQMISHGFVSGALFLCVGVI 357
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ T E+ + GL R P A + M+F + G P T GF +F F+
Sbjct: 358 YDRM--HTREIAAYGGLVNRMPIYAFVFMLFTMANVGLPGTTGFIGEFLSLMGAFKANS- 414
Query: 890 WLLLL 894
W+ L+
Sbjct: 415 WVALI 419
>gi|407781570|ref|ZP_11128788.1| NADH:ubiquinone oxidoreductase subunit M [Oceanibaculum indicum
P24]
gi|407207787|gb|EKE77718.1| NADH:ubiquinone oxidoreductase subunit M [Oceanibaculum indicum
P24]
Length = 499
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 275/369 (74%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ F I Y +G+DG+S++F+ L+ +T I +L S D +K ++ EYM AFL+L +
Sbjct: 63 EKVAWMPEFGIGYHMGVDGISMFFVLLSTLLTPICVLASWDSVKTRVKEYMIAFLVLETM 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD +LFYIFFEA LIP+FIIIG WGG+ R YAA KFFLYTL+GS+LML++++
Sbjct: 123 MVGMFCALDLVLFYIFFEAVLIPMFIIIGVWGGARRVYAAFKFFLYTLLGSVLMLLAILA 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 183 MYFDAGTT-DIPTLMAHGFPAGMQHWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LK+G YG +RFSLP+ P+AS +F+ L+ LS++++IY SL+A+ Q D+KKLIA
Sbjct: 242 VILAGVLLKMGGYGFIRFSLPMMPEASEFFAPLVFALSIVAVIYTSLVALAQEDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T +QGAI QM+SH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 302 YSSVAHMGFVTIGIFTATMQGLQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIARYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+++ +P +++ F++F LA+ LPGTSGF+GEF+++ A N I L +T ++ AAY
Sbjct: 362 LVHNMPRYALVFMVFMLASVGLPGTSGFVGEFLVLTGAFMTNSWIAFLAATGVVLGAAYM 421
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 422 LYLYRRVVF 430
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ ++ + ++F
Sbjct: 219 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFIRFSLPMMPEASEFFAPLVFA 277
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+I A + L+ + Q D+K++IAYS+++ +G++T+G+ + +IF +++H
Sbjct: 278 LSIVAVIYTSLVALAQEDMKKLIAYSSVAHMGFVTIGIFTATMQGLQGAIFQMLSHGIVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ +L+ VG P SGF +
Sbjct: 338 GALFLCVG-VVYDRLHTREIARYGGLVHNMPRYALVFMVFMLASVGLPGTSGFVGE 392
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 123/278 (44%), Gaps = 23/278 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML I +Y GT ++ ++ + + L
Sbjct: 161 AAFKFFLYTLLGSVLMLLAILAMYFDAGTTDIPTLMA----HGFPAGMQHWLWLAFFASF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ L + I+ LP++ +
Sbjct: 217 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGV----LLKMGGYGFIRFSLPMMPEASEFFA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ L+I ++I ++ A+ Q + K++IAYSS+AHMG + I + IF
Sbjct: 273 PLVFALSIVAVIYTSLVALAQEDMKKLIAYSSVAHMGFVTIGIFTATMQGLQGAIFQMLS 332
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
G+ + GA + + + + + T E+ + GL P AL+ M+FM + G
Sbjct: 333 HGI---------VSGALFLCVGVVYDRLH-TREIARYGGLVHNMPRYALVFMVFMLASVG 382
Query: 867 FPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
P T GF +F + F T W+ L ++GA
Sbjct: 383 LPGTSGFVGEFLVLTGAFMTNS-WIAFLAATGVVLGAA 419
>gi|402772303|ref|YP_006591840.1| proton-translocating NADH-quinone oxidoreductase subunit M (NADH
dehydrogenase I subunit M) [Methylocystis sp. SC2]
gi|401774323|emb|CCJ07189.1| Proton-translocating NADH-quinone oxidoreductase subunit M (NADH
dehydrogenase I subunit M) [Methylocystis sp. SC2]
Length = 502
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 275/369 (74%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++K W+ + Y +G+DG S+ F+ LT F+ IL S D I+K++ EYM AFL+L L
Sbjct: 68 EEKNWLGS-GLVYKMGVDGFSMPFVLLTTFLMPFAILASWDSIQKRVKEYMIAFLVLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GSLLML++++
Sbjct: 127 MIGVFCALDLVLFYLFFEGGLIPMFLIIGIWGGKRRVYASFKFFLYTLVGSLLMLVAILA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y + + +I K Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MYGKAGTT-DITVLLNTDFPKEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG +RFSLP+FPDAS F+ LI LS+I+I+Y SL+A+VQ DIKKLIA
Sbjct: 246 VILAAILLKMGGYGFIRFSLPMFPDASTNFAPLIYALSVIAIVYTSLVALVQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+G+F L +QGAI QMISH L+S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGLFTLNAQGMQGAIFQMISHGLVSGALFLCVGVIYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGT+GFIGEF+ + A + N + ++ ++ ++ SAAY+
Sbjct: 366 LVNRMPIYAFVFMLFTMANVGLPGTTGFIGEFLSLTGAFQANSWVALIATSGVVLSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LYLYRRVIF 434
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F ++T + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFIRFSLPMFPDASTNFAPLIYA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q DIK++IAYS+++ +G++T+G L +IF +++H
Sbjct: 282 LSVIAIVYTSLVALVQEDIKKLIAYSSVAHMGFVTMGLFTLNAQGMQGAIFQMISHGLVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MPI ++ ++ VG P +GF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAYGGLVNRMPIYAFVFMLFTMANVGLPGTTGF 393
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 135/302 (44%), Gaps = 30/302 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K +++S K+F+ ++ S ML I +YG
Sbjct: 135 DLVLFYLFFEGGLIPMFLIIGIWGGKRRVYAS---FKFFLYTLVGSLLMLVAILAMYGKA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
GT ++ + N + + L + K+ + P H W+PD + G+ I
Sbjct: 192 GTTDITVLLN----TDFPKEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+ +LL K+ + I R + N+ ++ L++ +++ ++ A+ Q + K+
Sbjct: 248 LAAILL----KMGGYGFI-RFSLPMFPDASTNFAPLIYALSVIAIVYTSLVALVQEDIKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHMG + + ++ IF GL + GA + + + +
Sbjct: 303 LIAYSSVAHMGFVTMGLFTLNAQGMQGAIFQMISHGL---------VSGALFLCVGVIYD 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLL 892
+ T E+ + GL R P A + M+F + G P T GF +F F+ W+
Sbjct: 354 RMH-TREIAAYGGLVNRMPIYAFVFMLFTMANVGLPGTTGFIGEFLSLTGAFQANS-WVA 411
Query: 893 LL 894
L+
Sbjct: 412 LI 413
>gi|395791013|ref|ZP_10470472.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella alsatica IBS 382]
gi|395409309|gb|EJF75908.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella alsatica IBS 382]
Length = 498
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
+I Y +G+DG+S+ F+ L+AF+ IL S + +K L YM AFL+L +IIG FCALD
Sbjct: 85 DINYHMGVDGISILFVVLSAFLLPFCILASWENVKDSLKAYMIAFLLLEVVIIGVFCALD 144
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
MLFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYTL+GS+LML++++ +Y+ +
Sbjct: 145 AMLFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLMLVALMVMYW-EAGTL 203
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 204 DIPTLLNYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 263
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ + TLSLI+IIY SL+A+VQ DIKKLIAYSSIAHMG+
Sbjct: 264 LGGYGFLRFSLPMFPIASADFAPFVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGY 323
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH +IS+A+F+ +G +Y+++ TR IS FGG++N +P ++
Sbjct: 324 VTMGIFASNEQGVQGAIYQMLSHGIISAALFLCVGVIYDRLHTREISAFGGLVNNMPKYA 383
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGF+GEF+ ++ + + + V +T +I SAAY+L L + +IF
Sbjct: 384 VVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVSKLVVVFATTGVILSAAYALYLYRRVIF 443
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + +F
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPFVFT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ S +I+ +++H
Sbjct: 291 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFASNEQGVQGAIYQMLSHGIIS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 351 AALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 405
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 148/358 (41%), Gaps = 61/358 (17%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + ++Y GTL++ ++ N + L
Sbjct: 174 ASIKFFLYTLLGSVLMLVALMVMYWEAGTLDIPTLLN----YQFPAHMQIWLWLAFFASF 229
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 281
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ + L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 282 ADFAPFVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFASNEQGVQGAIY 341
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 342 QMLSHGIISA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 391
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYI 922
+ G P + GF +F +F+ K+ ++ A G I+
Sbjct: 392 ANVGLPGSSGFLGEFLTLIGVFQVSKL---------VVVFATTGVILSAA---------- 432
Query: 923 VEAIKAARKSALIINRGSLELENLRF--EEKKYENFVFNINKASEKIITKILFNTYPS 978
A+ R+ + GSL+ ENL+ + E F+ II I F YP+
Sbjct: 433 -YALYLYRR----VIFGSLDKENLKILVDLSSREKFILY-----PMIILTIFFGVYPT 480
>gi|300023441|ref|YP_003756052.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Hyphomicrobium denitrificans ATCC 51888]
gi|299525262|gb|ADJ23731.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Hyphomicrobium denitrificans ATCC 51888]
Length = 495
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 279/369 (75%), Gaps = 4/369 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
++ W+ ++ Y LG+DG+S+ FI LT F+ + IL S + ++ ++ EYM AFL+L L
Sbjct: 63 EEHAWLG--SLKYKLGVDGISMLFIILTTFLMPLCILASWVSVENRVKEYMIAFLVLETL 120
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+FIIIG WGG R YA+ KFFLYTL+GS+LML++M+
Sbjct: 121 MLGVFSALDLVLFYLFFEGGLIPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAMMA 180
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q Q WL+I FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 181 MYWHAGTT-DIPTLLQTKFPPDMQWWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 239
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LK+G YG LRFSLP+FP+AS + L+ +LS+I+IIY SL+A+VQ D+KKLIA
Sbjct: 240 VILAGILLKMGGYGFLRFSLPMFPNASADLAPLVFSLSIIAIIYTSLVALVQEDMKKLIA 299
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF ++ I GAI QM+SH L+SSA+F+ +G +Y++M TR IS +GG
Sbjct: 300 YSSVAHMGYVTMGIFTGSQQGIDGAIFQMLSHGLVSSALFLCVGVIYDRMHTREISAYGG 359
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ +P ++V F+IF++AN LPGTSGFIGEF+ +++A K N + +L +T +I SAAY+
Sbjct: 360 LVERMPKYAVAFMIFTMANVGLPGTSGFIGEFLTLMAAFKSNTWVAILATTGIILSAAYA 419
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 420 LYLYRRVVF 428
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ L+ ++F
Sbjct: 217 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPNASADLAPLVFS 275
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 276 LSIIAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFTGSQQGIDG---AIFQMLSHG 332
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G +I + H ++I GGL + MP + +I ++ VG P SGF
Sbjct: 333 LVSSALFLCVG-VIYDRMHTREISAYGGLVERMPKYAVAFMIFTMANVGLPGTSGF 387
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 31/272 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ ++ ++ + +
Sbjct: 159 ASFKFFLYTLLGSVLMLLAMMAMYWHAGTTDIPTLLQTKFPPDMQWWLW----IAFFASF 214
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQ 746
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+ N
Sbjct: 215 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFLRFSLPMFPNAS 266
Query: 747 ----KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ L+I ++I ++ A+ Q + K++IAYSS+AHMG + I + + IF
Sbjct: 267 ADLAPLVFSLSIIAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFTGSQQGIDGAIF 326
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL + + +F +G +I + + T E+ + GL +R P A+ MIF
Sbjct: 327 QMLSHGL--VSSALFLCVG----VIYDRMH----TREISAYGGLVERMPKYAVAFMIFTM 376
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLL 894
+ G P T GF +F F++ W+ +L
Sbjct: 377 ANVGLPGTSGFIGEFLTLMAAFKSNT-WVAIL 407
>gi|389877823|ref|YP_006371388.1| NADH dehydrogenase subunit M [Tistrella mobilis KA081020-065]
gi|388528607|gb|AFK53804.1| NADH dehydrogenase subunit M [Tistrella mobilis KA081020-065]
Length = 507
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/394 (48%), Positives = 283/394 (71%), Gaps = 2/394 (0%)
Query: 196 TCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
+ IT LI LL G + + +K W + I Y LGIDG+SLWF+ LT + I
Sbjct: 43 SVITFLISLLLWTGFDSSTAAFQFVEKAEWFPGYGIDYHLGIDGISLWFVLLTTLLIPIC 102
Query: 256 ILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
+L S + I K++ EYM AFL + LIIG+F ALD +LFY FFEA LIP+F+IIG WGG
Sbjct: 103 VLASWESITKRVKEYMIAFLAMETLIIGSFVALDFVLFYFFFEAMLIPLFLIIGIWGGKR 162
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAF 374
R YA+ KFFLYT++GS+LML++++Y+Y+ + + +I + + QI+L++ F +F
Sbjct: 163 RIYASFKFFLYTMLGSVLMLVALLYMYFQAGTT-DIPTLMATPFGREAQIFLWLAMFASF 221
Query: 375 AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLII 434
A+K+P+WP+HTWLPDAHVEAPT GSV+LA I+LK+G YG LRFSLP+ PDAS YF+ LI
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVLLAGILLKVGGYGFLRFSLPMLPDASQYFAPLIF 281
Query: 435 TLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALI 494
LS+++++Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GI+ I+G+IIQM+SH L+
Sbjct: 282 GLSMVAVVYTSLVALVQGDMKKLIAYSSVAHMGFVTIGIYTFNTQGIEGSIIQMLSHGLV 341
Query: 495 SSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
S A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++A+ LPGTSGF+GEF+++
Sbjct: 342 SGALFLCVGVVYDRMHTRDIDRYGGLVNRMPGYALIFLFFTMASIGLPGTSGFVGEFLVL 401
Query: 555 LSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ A + N + + +T +I A Y L L + ++F
Sbjct: 402 VGAFQANTWVAFIAATGVILGACYMLWLYRRVVF 435
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT S L+ A ++ G + R S P+ ++ + ++F
Sbjct: 224 KMPMWPVHTWLPDAHVEAPTAGSVLL-AGILLKVGGYGFLRFSLPMLPDASQYFAPLIFG 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q D+K++IAYS+++ +G++T+G+ SI +++H
Sbjct: 283 LSMVAVVYTSLVALVQGDMKKLIAYSSVAHMGFVTIGIYTFNTQGIEGSIIQMLSHGLVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H +DI GGL MP + L ++ +G P SGF +
Sbjct: 343 GALFLCVG-VVYDRMHTRDIDRYGGLVNRMPGYALIFLFFTMASIGLPGTSGFVGE 397
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 26/298 (8%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + I K I++S K+F+ +L S ML + +Y GT ++ ++
Sbjct: 148 LIPLFLIIGIWGGKRRIYAS---FKFFLYTMLGSVLMLVALLYMYFQAGTTDIPTLMA-- 202
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
L + + K+ + P H W+PD + A ++LL+ + L V
Sbjct: 203 --TPFGREAQIFLWLAMFASFAVKMPMWPVHTWLPDAHVEAPTAGSVLLA---GILLKVG 257
Query: 730 IYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
Y L + LP++ + + ++ L++ +++ ++ A+ Q + K++IAYSS+AHMG +
Sbjct: 258 GYGFL-RFSLPMLPDASQYFAPLIFGLSMVAVVYTSLVALVQGDMKKLIAYSSVAHMGFV 316
Query: 786 LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIG 845
I + T I GL + GA + + + + + T ++D + G
Sbjct: 317 TIGIYTFNTQGIEGSIIQMLSHGL---------VSGALFLCVGVVYDRMH-TRDIDRYGG 366
Query: 846 LHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
L R P ALI + F + G P T GF +F + F+ W+ + ++GA
Sbjct: 367 LVNRMPGYALIFLFFTMASIGLPGTSGFVGEFLVLVGAFQANT-WVAFIAATGVILGA 423
>gi|398829522|ref|ZP_10587720.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Phyllobacterium sp. YR531]
gi|398217007|gb|EJN03547.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Phyllobacterium sp. YR531]
Length = 501
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/370 (51%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+D I Y +G+DG+S+ F+ LT F+ + IL S + I+ ++ EYM AFL+L L
Sbjct: 68 EKAAWLDS-GISYHMGVDGISMLFVILTTFLMPLCILASWEAIQTRVKEYMIAFLVLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD +LFY+FFEA L+P+FIIIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFCALDIVLFYVFFEAVLVPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
+Y+ + + L H ++ Q WL+ FF +FA+K+P+WP+HTWLPDAHVEAPT
Sbjct: 187 MYWQAGTTDIPTLLAHSFPVSM--QTWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAA 244
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
S ILA I+LKLG YG LRFSLP+FP AS F+ +I TLS+++I+Y SL+A++Q DIKKLI
Sbjct: 245 SAILAGILLKLGGYGFLRFSLPMFPVASADFAPIIYTLSVVAIVYTSLVALMQEDIKKLI 304
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS+AHMG+VT+GIF + IQGA+ QM+SH L+S+A+F+ +G +Y++ TR IS +G
Sbjct: 305 AYSSVAHMGYVTMGIFAANEQGIQGALFQMLSHGLVSAALFLCVGIVYDRTHTREISAYG 364
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G++N +P ++V F+IF++AN LPGTSGFIGEF+ ++ + N + + ++ +IFSAAY
Sbjct: 365 GLVNNMPKYAVVFLIFTMANVGLPGTSGFIGEFLTLMGVFRVNTWVALFATSGVIFSAAY 424
Query: 579 SLCLSKNIIF 588
+L L + ++F
Sbjct: 425 ALWLYRRVVF 434
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT ASA++ A ++ G + R S P+F +++ + I++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPTAASAIL-AGILLKLGGYGFLRFSLPMFPVASADFAPIIYT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q DIK++IAYS+++ +GY+T+G+ G+ ++F +++H
Sbjct: 282 LSVVAIVYTSLVALMQEDIKKLIAYSSVAHMGYVTMGIFAANEQGIQG---ALFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G I+ + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 339 LVSAALFLCVG-IVYDRTHTREISAYGGLVNNMPKYAVVFLIFTMANVGLPGTSGF 393
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 120/271 (44%), Gaps = 31/271 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I +Y GT ++ ++ ++ S+
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMAMYWQAGTTDIPTLLA----HSFPVSMQTWLWFAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A + +L+ I+ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAASAILAG--------ILLKLGGYGFLRFSLPMFPVAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ I+ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I + +F
Sbjct: 273 ADFAPIIYTLSVVAIVYTSLVALMQEDIKKLIAYSSVAHMGYVTMGIFAANEQGIQGALF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL + +F +G ++ + T T E+ + GL P A++ +IF
Sbjct: 333 QMLSHGL--VSAALFLCVG------IVYDRT--HTREISAYGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 383 ANVGLPGTSGFIGEFLTLMGVFRVNT-WVAL 412
>gi|148361090|ref|YP_001252297.1| NADH dehydrogenase I subunit M [Legionella pneumophila str. Corby]
gi|148282863|gb|ABQ56951.1| NADH dehydrogenase I, M subunit [Legionella pneumophila str. Corby]
Length = 501
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 280/376 (74%), Gaps = 13/376 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ I Y LGIDGLSL I L+ F LI+IL + D I KK+++Y+SAFLI+ GL++G
Sbjct: 68 WMPALGINYTLGIDGLSLLLIVLSIFTNLIVILATWDSISKKVSQYLSAFLIMQGLLVGI 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A+D ++FYIF+EATLIP+++IIG WG NR YAAIKFFLYT +GS+LML S +Y+ YI
Sbjct: 128 FSAMDAIVFYIFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLASFLYMGYI 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +++ + + Q +FI FF+ FAIKIP++P+HTWLPDAH EAP GSV+LA
Sbjct: 188 AG-SFKIETFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPAGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI+LKLG YG +RFSLPI PDA ++ L++ LSLI+++YI LIA++Q D+KKLIAYSSI
Sbjct: 247 AILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIAIIQKDMKKLIAYSSI 306
Query: 464 AHMGFVTLGIFMLTKIS-----------IQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
+HMGFVTLG F + I+ ++GAI+ MISHA +SSAMF +GF+Y++M TR
Sbjct: 307 SHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVSSAMFAGVGFIYDRMHTR 366
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
+++FGGI+N +P F+ FF++F++AN LPGTSGF+GEFM+IL ++K F + T L
Sbjct: 367 QLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMVILGSIKAGFWVHFGLQTTL 426
Query: 573 IFSAAYSLCLSKNIIF 588
I AAY+L + K +IF
Sbjct: 427 IIGAAYTLWMYKRVIF 442
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 9 FLGWEIVGMASYLLIGF---------WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTW 59
FLG ++ +AS+L +G+ +Y L +TA F+ +G K FP+HTW
Sbjct: 171 FLG-SVLMLASFLYMGYIAGSFKIETFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTW 229
Query: 60 LPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGL 117
LPD+ +++ AA ++ G + R S P+ + + +++ + I ++GL
Sbjct: 230 LPDAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGL 289
Query: 118 LGIIQNDIKRIIAYSTLSQLGYMTVGL----------GVSAYTV----SIFHLMTHAFFK 163
+ IIQ D+K++IAYS++S +G++T+G G+S + +I +++HAF
Sbjct: 290 IAIIQKDMKKLIAYSSISHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVS 349
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ +F G I M H + + + GG+ MPI ++ ++ G P SGF +
Sbjct: 350 SAMFAGVGFIYDRM-HTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGE 404
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 36/285 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ AAIK+F+ L S ML + I G+ ++++ F I
Sbjct: 144 LIPMYLIIGIWGSDNRVY---AAIKFFLYTFLGSVLMLASFLYMGYIAGSFKIET-FYAI 199
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
KL +++ ++ L G + K+ + P H W+PD + G S+++ +L KL
Sbjct: 200 KLGMTAQTLIFIAFFL---GFAIKIPMFPVHTWLPDAHTEAPAGGSVVLAAILL---KLG 253
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ I+ LP+V + + +++ L++ +++ + AI Q + K++IAYSSI+H
Sbjct: 254 AYG-----FIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIAIIQKDMKKLIAYSSISH 308
Query: 782 MG---LMLFSIISIKT----SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
MG L F+I +I S+ LI+ + + +I++ F F + + +
Sbjct: 309 MGFVTLGCFAIFAIARHGGLSNAGLIL----EGAIVVMISHAFVSSAMFAGVGFIYDRM- 363
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
T +L F G+ P A M+F + AG P T GF +F +
Sbjct: 364 -HTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMV 407
>gi|390572148|ref|ZP_10252373.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia terrae BS001]
gi|420253955|ref|ZP_14756982.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. BT03]
gi|389935936|gb|EIM97839.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia terrae BS001]
gi|398050403|gb|EJL42772.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. BT03]
Length = 511
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/399 (46%), Positives = 284/399 (71%), Gaps = 18/399 (4%)
Query: 205 LSLVGA--------PFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
L+L+GA P +GF S +++ W+ F I Y LG+DG+SLWF LTA
Sbjct: 36 LALIGAAVSILPVIPLVAGFDSSLSTMQFEQQSAWLPEFGISYHLGVDGISLWFTVLTAV 95
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
TLII++ S + I ++A+Y AFL+LSG + G F +LDGMLF++FFEA+LIP++++IGT
Sbjct: 96 TTLIIVIASWESITTRVAQYYGAFLLLSGCMQGVFTSLDGMLFFVFFEASLIPLYLLIGT 155
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WG R YAA++FF ++L+GSL ML ++IYL+ S+ +F+I +W L + + QI +FI
Sbjct: 156 WGEKRRVYAAVRFFFFSLVGSLAMLAALIYLWAHSH-TFDIATWRTLKLDFMPQIMVFIG 214
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
F AF++K+P+WP+HTWLPD H + PT +V+L MLK+G YGLLRF+LPI PDA ++F
Sbjct: 215 FIAAFSVKVPMWPVHTWLPDVHSDGPTGAAVLLG--MLKMGGYGLLRFALPIVPDACHFF 272
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
+ +I LSL+++IY SL+A+ Q D++KL+AYS++AHMG VTLG+F ++ +GA++QM+
Sbjct: 273 APAMIALSLVAVIYGSLLALAQTDMRKLLAYSAVAHMGLVTLGLFTFDRMGTEGAVVQML 332
Query: 490 SHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
S+ ++S AM + G L+++ K I +GG+ N +P + F ++FS+AN LPGTSGF+G
Sbjct: 333 SYGIVSGAMLLCTGMLFDRTKNGSIDAYGGVANSMPKLATFAMLFSMANVGLPGTSGFVG 392
Query: 550 EFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
EF++++ A++FNF +G + LI SAAY+L + K ++F
Sbjct: 393 EFLVLMGAIRFNFWVGATAALTLILSAAYTLWMYKRVMF 431
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 175/396 (44%), Gaps = 53/396 (13%)
Query: 508 QMKTRLISNFGGIINVIPHFS-VFFIIFSLANCSLPGTSGFIGEFMII--LSAVKFNFCI 564
Q +TR ++ G ++++P V SL+ S ++ EF I L +
Sbjct: 30 QSRTRWLALIGAAVSILPVIPLVAGFDSSLSTMQFEQQSAWLPEFGISYHLGVDGISLWF 89
Query: 565 GVLTS-TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLT+ T LI A ++ + G +++SG L ++ L+ L
Sbjct: 90 TVLTAVTTLIIVIASWESITTRVAQYYGAFLLLSGCMQGVFTSLDGMLFFVFFEASLIPL 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
L + +K ++ AA+++F ++ S ML + L+ + T ++ + + +KL+
Sbjct: 150 YLLIGTWGEKRRVY---AAVRFFFFSLVGSLAMLAALIYLWAHSHTFDIAT-WRTLKLDF 205
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVI 729
+ ++ + I S K+ + P H W+PDV+ GA++++ +L K+ +
Sbjct: 206 MPQIMVFIGF---IAAFSVKVPMWPVHTWLPDVHSDGPTGAAVLLGML-----KMGGYG- 256
Query: 730 IYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
L++ LP+V + + ++ L++ ++I G++ A+ Q + ++++AYS++AHMGL+
Sbjct: 257 ----LLRFALPIVPDACHFFAPAMIALSLVAVIYGSLLALAQTDMRKLLAYSAVAHMGLV 312
Query: 786 LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--ELDIF 843
+ + + G+ G ++L ++T +D +
Sbjct: 313 TLGLFTFDRMGTEGAVVQMLSYGIVS------------GAMLLCTGMLFDRTKNGSIDAY 360
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A M+F + G P T GF +F +
Sbjct: 361 GGVANSMPKLATFAMLFSMANVGLPGTSGFVGEFLV 396
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 22/182 (12%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIF-----MITRMSPLFELSNTALSI 103
K +P+HTWLPD +GPT A+ L+ M G+ ++ F + ALS+
Sbjct: 222 KVPMWPVHTWLPDVHSDGPTGAAVLLGMLKMGGYGLLRFALPIVPDACHFFAPAMIALSL 281
Query: 104 ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLM 157
+ I + LL + Q D+++++AYS ++ +G +T+GL G ++ ++
Sbjct: 282 VAVI------YGSLLALAQTDMRKLLAYSAVAHMGLVTLGLFTFDRMGTEG---AVVQML 332
Query: 158 THAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFY 217
++ + L G ++ + N I GG+ MP +++ ++ VG P SGF
Sbjct: 333 SYGIVSGAMLLCTG-MLFDRTKNGSIDAYGGVANSMPKLATFAMLFSMANVGLPGTSGFV 391
Query: 218 SK 219
+
Sbjct: 392 GE 393
>gi|288958977|ref|YP_003449318.1| NADH dehydrogenase I subunit M [Azospirillum sp. B510]
gi|288911285|dbj|BAI72774.1| NADH dehydrogenase I chain M [Azospirillum sp. B510]
Length = 508
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/373 (48%), Positives = 277/373 (74%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y +K WI F I Y +G+DG+S+ F+ L+ F+ + IL S + ++ +L EYM AFL
Sbjct: 65 YQMVEKAGWIPEFGINYHMGVDGISVLFVVLSGFLMPLCILASWESVQVRLKEYMIAFLA 124
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L L+IG FCALD +LFY+FFE LIP+F+IIG WGG R YAA KFFLYTL+GS+LML+
Sbjct: 125 LETLMIGMFCALDFVLFYMFFEGVLIPMFLIIGVWGGPRRVYAAFKFFLYTLLGSVLMLL 184
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++ +YY++ + +I + + Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 185 AILAMYYVAGTT-DIPTITATQFPRGMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAP 243
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG LRF++PI P+A+ YF+ LI TLS++++IY SL+A+ Q D+K
Sbjct: 244 TAGSVILAGVLLKMGGYGFLRFNIPILPEATEYFAPLIYTLSVVAVIYTSLVALAQEDMK 303
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMGFVT+G+F L + I+G++ QM+SH ++S A+F+ +G +Y+++ TR I+
Sbjct: 304 KLIAYSSVAHMGFVTIGMFALNQQGIEGSVFQMLSHGVVSGALFLCVGVVYDRLHTREIA 363
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++ +P ++V F+ ++A+ LPGT+GF+GEF++++ + N + L +T ++
Sbjct: 364 RYGGLVKNMPKYAVVFLFMTMASVGLPGTAGFVGEFLVLMGVFRDNTWVAALAATGMVLG 423
Query: 576 AAYSLCLSKNIIF 588
AAY+L L + I++
Sbjct: 424 AAYALWLYRRIVY 436
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 6/175 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ + G F+ + L E + +I +
Sbjct: 225 KVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFNIPILPEATEYFAPLIYTL 284
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFKA 164
+ + L+ + Q D+K++IAYS+++ +G++T+G L S+F +++H
Sbjct: 285 SVVAVIYTSLVALAQEDMKKLIAYSSVAHMGFVTIGMFALNQQGIEGSVFQMLSHGVVSG 344
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL K MP + L ++ VG P +GF +
Sbjct: 345 ALFLCVG-VVYDRLHTREIARYGGLVKNMPKYAVVFLFMTMASVGLPGTAGFVGE 398
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 122/274 (44%), Gaps = 17/274 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML I +Y + GT ++ +I + + L
Sbjct: 167 AAFKFFLYTLLGSVLMLLAILAMYYVAGTTDIPTITATQFPRGMQLWLW----LAFFASF 222
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ K+ + + R I L + ++
Sbjct: 223 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFL-RFNIPILPEATEYFAPLI 281
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ ++I ++ A+ Q + K++IAYSS+AHMG + + ++ +F G+
Sbjct: 282 YTLSVVAVIYTSLVALAQEDMKKLIAYSSVAHMGFVTIGMFALNQQGIEGSVFQMLSHGV 341
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
+ GA + + + + + T E+ + GL + P A++ + + G P
Sbjct: 342 ---------VSGALFLCVGVVYDRLH-TREIARYGGLVKNMPKYAVVFLFMTMASVGLPG 391
Query: 870 TIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
T GF +F + +F W+ L ++GA
Sbjct: 392 TAGFVGEFLVLMGVFR-DNTWVAALAATGMVLGA 424
>gi|389794720|ref|ZP_10197866.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter fulvus
Jip2]
gi|388431934|gb|EIL88974.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter fulvus
Jip2]
Length = 502
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/411 (48%), Positives = 287/411 (69%), Gaps = 21/411 (5%)
Query: 198 ITSLIGLLSLVGAPFFSGFYSKD-------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAF 250
++ L+ +L+ V + F Y+ D + +WI + ++Y L +DG+S+ I +T F
Sbjct: 34 LSMLVAVLTFVASLFLLVRYNADTGGMQLTESYLWIASWGVHYGLAVDGISVALIVMTTF 93
Query: 251 ITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
+ +++I + + I+ K YM+A LIL GL+IG FCA D +LFY FEA LIP+FI+IG
Sbjct: 94 VGILVIAGAWEVIQDKPHLYMAAMLILEGLLIGVFCATDALLFYALFEAILIPMFILIGM 153
Query: 310 WGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFIT 369
WGG R YA +KFF+YT GS+ MLI+++YLY + +F++ + L +T EQ W+F
Sbjct: 154 WGGPRRVYATLKFFIYTFFGSVFMLIALLYLYQKAG-TFDLATLAALPLTFKEQAWIFFA 212
Query: 370 FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
F IAFAIK+P+ P+HTWLPDAHVEAPT GSV+LAA+MLK+G YG+LRF LPI PDA +F
Sbjct: 213 FLIAFAIKVPMVPVHTWLPDAHVEAPTGGSVVLAAVMLKVGTYGMLRFILPIVPDAGAHF 272
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFM------------LT 477
+ LI+ LSLI+I+YI +A+VQ D+KKL+AYSS+AHMGFVTLGIF+ +
Sbjct: 273 AWLIVVLSLIAIVYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFIAFALVREQGSTDMA 332
Query: 478 KISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ +QGA++QMISH +S AMF IG +Y++ TR I ++GG+INV+P F F+++F++A
Sbjct: 333 LLGMQGAMVQMISHGFVSGAMFTCIGVMYDRTHTRQIKDYGGVINVMPWFGFFYVLFAMA 392
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
NC LPGTSGF+GEFM+IL++ + I + + LI AAY+L L K +++
Sbjct: 393 NCGLPGTSGFVGEFMVILASFAASPWIALFAAFTLIIGAAYTLWLVKRVLW 443
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR-MSPLFELSNTALS-IILF 106
K P+HTWLPD+ +E PT S ++ AA M+ G + + R + P+ + + +I+
Sbjct: 220 KVPMVPVHTWLPDAHVEAPTGGSVVL-AAVMLKVGTYGMLRFILPIVPDAGAHFAWLIVV 278
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------- 151
+ I ++G + ++Q D+K+++AYS+++ +G++T+G+ ++ V
Sbjct: 279 LSLIAIVYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFIAFALVREQGSTDMALLGMQG 338
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I++ GG+ MP ++ ++ G P
Sbjct: 339 AMVQMISHGFVSGAMFTCIG-VMYDRTHTRQIKDYGGVINVMPWFGFFYVLFAMANCGLP 397
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 398 GTSGFVGE 405
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 128/286 (44%), Gaps = 27/286 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A +K+FI S FML + LY GT +L ++ + + A ++
Sbjct: 162 ATLKFFIYTFFGSVFMLIALLYLYQKAGTFDLATLAAL----PLTFKEQAWIFFAFLIAF 217
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV---- 742
+ K+ + P H W+PD + G S+++ ++ L V Y +L + +LP+V
Sbjct: 218 AIKVPMVPVHTWLPDAHVEAPTGGSVVLAAVM-------LKVGTYGML-RFILPIVPDAG 269
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII----SIKTSHNN 798
++ ++++L++ +++ A+ Q + K+++AYSS+AHMG + I ++ +
Sbjct: 270 AHFAWLIVVLSLIAIVYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFIAFALVREQGST 329
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+ + +I++ F F I ++ + T T ++ + G+ PW +
Sbjct: 330 DMALLGMQGAMVQMISHGFVSGAMFTCIGVMYDRT--HTRQIKDYGGVINVMPWFGFFYV 387
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F + G P T GF +F + F W+ L +IGA
Sbjct: 388 LFAMANCGLPGTSGFVGEFMVILASFAASP-WIALFAAFTLIIGAA 432
>gi|254247832|ref|ZP_04941153.1| NADH dehydrogenase subunit 4 [Burkholderia cenocepacia PC184]
gi|124872608|gb|EAY64324.1| NADH dehydrogenase subunit 4 [Burkholderia cenocepacia PC184]
Length = 490
Score = 395 bits (1014), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/430 (44%), Positives = 299/430 (69%), Gaps = 25/430 (5%)
Query: 166 LFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD----- 220
+ L AGS +H++ IR I I ++ GL ++V P +GF +
Sbjct: 1 MLLRAGSD----QHSRRIRL---------IALIGAIAGLAAVV--PLIAGFDAHSAAMQF 45
Query: 221 -KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
+++ W+ FN + +GIDG SLW + LTAF TL++++ S + + ++A+Y ++FLILSG
Sbjct: 46 VERRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQYYASFLILSG 105
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L++G F A DG+LF+IFFEATLIP++++IGTWG R YAA+KFF + GSL +L++M+
Sbjct: 106 LMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFAGSLFLLMAML 165
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YLY S+ +F++ W L + Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT
Sbjct: 166 YLYAQSH-TFDMAVWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDGPTGA 224
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
+++LA MLKLG YG LRF+LPI PDAS++F+ +I LSL +I+Y SLIA+ Q D+ KL+
Sbjct: 225 ALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLGKLL 282
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYS++AHMG VTLG+F+ +I ++GAI+Q++S+ ++ AM + + L ++ + R I+ +G
Sbjct: 283 AYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDRTRQREIAAYG 342
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ V+P F+ F ++F++AN LPGTSGF+GEFM+I+ A++FNF IG + + LI SA+Y
Sbjct: 343 GVAGVMPRFATFTLLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLILSASY 402
Query: 579 SLCLSKNIIF 588
+L + K ++F
Sbjct: 403 TLWMLKRVVF 412
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 133/298 (44%), Gaps = 63/298 (21%)
Query: 604 IYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQ 663
I+ L+ L L + ++ ++ AA+K+F + S F+L + LY + T ++
Sbjct: 121 IFFEATLIPLYLLIGTWGRERRVY---AAVKFFFISFAGSLFLLMAMLYLYAQSHTFDM- 176
Query: 664 SIFNVIKLNNINCSVLALSLLLII---VGLSFKLGISPFHMWVPDVYQ----GASIIITL 716
+++ ++L A LL+ + + K+ + P H W+ DVY GA++++ +
Sbjct: 177 AVWRTLQLG------FAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDGPTGAALMLAM 230
Query: 717 L-----------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAI 765
L L TP S F P VI L++F+++ ++ A+
Sbjct: 231 LKLGGYGFLRFALPITPDASHF----------FAPAVIA-------LSLFAIVYASLIAL 273
Query: 766 TQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAF 823
Q + +++AYS++AHMG++ L +FN + + +++Y F
Sbjct: 274 AQTDLGKLLAYSTVAHMGIVTL----------GLFLFNRIGVEGAIVQLVSYGFVA---- 319
Query: 824 GVIILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G ++L N ++T + +I + G+ P A ++F + G P T GF +F +
Sbjct: 320 GAMLLCVNVLVDRTRQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGFVGEFMV 377
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 203 KVPMWPVHTWLSDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 255
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 256 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 312
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L +++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 313 VSYGFVAGAMLLCV-NVLVDRTRQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGF 371
Query: 217 YSK 219
+
Sbjct: 372 VGE 374
>gi|83858402|ref|ZP_00951924.1| NADH dehydrogenase subunit M [Oceanicaulis sp. HTCC2633]
gi|83853225|gb|EAP91077.1| NADH dehydrogenase subunit M [Oceanicaulis sp. HTCC2633]
Length = 515
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/365 (52%), Positives = 268/365 (73%), Gaps = 3/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
W+ I Y +G+DG+S+ F+ LTAF+ I IL S + K++A+YM+AFL+L L+IG F
Sbjct: 78 WLPALGISYKMGVDGISVLFVVLTAFLLPICILSSWKLDKRVADYMAAFLLLETLVIGVF 137
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY-YI 343
CALD LFYIFFE +LIP+F+IIG WGG NR YAA KFFLYT +GS+LML +MI ++ +
Sbjct: 138 CALDMFLFYIFFEGSLIPMFLIIGVWGGQNRIYAAFKFFLYTFLGSVLMLAAMIVMFTQV 197
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+L H + + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA
Sbjct: 198 GTTDIEVLLAHPFA--RDLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILA 255
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
I+LKLG YG LRFS+P+FP+AS +F+ ++ LS+I+I+ SLIA Q DIKKLIAYSS+
Sbjct: 256 GILLKLGGYGFLRFSIPMFPNASEFFAPMVFILSIIAIVVTSLIAFRQTDIKKLIAYSSV 315
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVTLGIF +T++ +QGAI QM+SH +IS+A+F+ IG +Y++ TR IS +GG+++
Sbjct: 316 AHMGFVTLGIFTMTELGVQGAIFQMLSHGVISAALFLCIGVIYDRFHTREISFYGGLVHK 375
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P ++ F +F++AN LPGTSGFIGE M + A + + + + +IFSA Y L
Sbjct: 376 MPVYAAVFGLFAMANVGLPGTSGFIGEIMTMTGAFQVDPRVAAGAALGVIFSAVYMLVAY 435
Query: 584 KNIIF 588
K ++F
Sbjct: 436 KKVVF 440
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 102/178 (57%), Gaps = 18/178 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ + ++FI
Sbjct: 229 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGFLRFSIPMFPNASEFFAPMVFI 287
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHA 160
+I A + L+ Q DIK++IAYS+++ +G++T+G LGV +IF +++H
Sbjct: 288 LSIIAIVVTSLIAFRQTDIKKLIAYSSVAHMGFVTLGIFTMTELGVQG---AIFQMLSHG 344
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSL--VGAPFFSGF 216
A LFL G +I + H ++I GGL MP+ ++ GL ++ VG P SGF
Sbjct: 345 VISAALFLCIG-VIYDRFHTREISFYGGLVHKMPVYA--AVFGLFAMANVGLPGTSGF 399
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 33/296 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L I+ L+ + L + + +N I+ AA K+F+ L S ML + +++ GT
Sbjct: 144 LFYIFFEGSLIPMFLIIGVWGGQNRIY---AAFKFFLYTFLGSVLMLAAMIVMFTQVGTT 200
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
+++ V+ + + L + K+ + P H W+PD + A +++L+
Sbjct: 201 DIE----VLLAHPFARDLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 256
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKR 772
I+ +L ++ +P+ N + ++ IL+I ++++ ++ A Q + K+
Sbjct: 257 --------ILLKLGGYGFLRFSIPMFPNASEFFAPMVFILSIIAIVVTSLIAFRQTDIKK 308
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHMG + I ++ IF G+ I +F +G +I + +
Sbjct: 309 LIAYSSVAHMGFVTLGIFTMTELGVQGAIFQMLSHGV--ISAALFLCIG----VIYDRFH 362
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
T E+ + GL + P A + +F + G P T GF + F+
Sbjct: 363 ----TREISFYGGLVHKMPVYAAVFGLFAMANVGLPGTSGFIGEIMTMTGAFQVDP 414
>gi|15836920|ref|NP_297608.1| NADH dehydrogenase subunit M [Xylella fastidiosa 9a5c]
gi|9105140|gb|AAF83128.1|AE003884_13 NADH-ubiquinone oxidoreductase, NQO13 subunit [Xylella fastidiosa
9a5c]
Length = 501
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/381 (51%), Positives = 280/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ +WI ++I Y LG+DG+++ + LT +T+++++ S I +++ +Y++AFLIL G+
Sbjct: 63 EQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IG F A D MLFY+FFEA LIP+F+IIG WGG R YAAIKFFLYT +GS+LML+ +IY
Sbjct: 123 TIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + + ++ EQ WLF F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-LKGGSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS+ F+ ++I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLGIF+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 302 YSSIAHMGFVTLGIFISFTLVRDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR I+++GG++NV+P F+ F + F +AN LPGTSGF+GEFM+IL++ + + +
Sbjct: 362 RMHTRCIADYGGVVNVMPWFATFAMFFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 422 AGATLVITAAYTLWLYKRVFF 442
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIF------------- 154
I ++GL+ ++Q D+K++IAYS+++ +G++T+G+ +S V F
Sbjct: 279 SLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFISFTLVRDFGNTDAARLGLQGA 338
Query: 155 --HLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+++H F +F G ++ + H + I + GG+ MP ++ ++ G P
Sbjct: 339 MVQMISHGFVSGAMFTCIG-VLYDRMHTRCIADYGGVVNVMPWFATFAMFFYMANAGLPG 397
Query: 213 FSGFYSK 219
SGF +
Sbjct: 398 TSGFVGE 404
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 130/270 (48%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ L S ML G+ LY G+ +L ++ ++L+ + L + L +
Sbjct: 161 AAIKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLY-AMQLSAKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + +
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K++IAYSSIAHMG F + I S + F + D
Sbjct: 273 WVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAHMG---FVTLGIFISFTLVRDFGNTD 329
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + + + + G+ PW A M
Sbjct: 330 AARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRMHTRC--IADYGGVVNVMPWFATFAMF 387
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 388 FYMANAGLPGTSGFVGEFMVILASFQKHPL 417
>gi|71732421|gb|EAO34475.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella
fastidiosa Ann-1]
Length = 501
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/381 (51%), Positives = 281/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ +WI ++I Y LG+DG+++ + LT +T+++++ S I +++ +Y++AFLIL G+
Sbjct: 63 EQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IG F A D MLFY+FFEA LIP+F+IIG WGG R YAAIKFFLYT +GS+LML+ +IY
Sbjct: 123 TIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + + ++ EQ WLF F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-LKGGSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS+ F+ ++I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLGIF+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 302 YSSIAHMGFVTLGIFIAFTLARDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ TR I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + +
Sbjct: 362 RLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 422 AGATLVITAAYTLWLYKRVFF 442
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q D+K++IAYS+++ +G++T+G+ + A+T+
Sbjct: 279 SLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFI-AFTLARDFGNTDAARLGLQG 337
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 338 AMVQMISHGFVSGAMFTCIG-VLYDRLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLP 396
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 397 GTSGFVGE 404
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 130/270 (48%), Gaps = 24/270 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ L S ML G+ LY G+ +L ++ ++L+ + L + L +
Sbjct: 161 AAIKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLY-AMQLSAKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + +
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + I T + F + D
Sbjct: 273 WVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFIAFTLARD---FGNTD 329
Query: 807 S-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ + +I++ F F I +L + T + + G+ PW A M+
Sbjct: 330 AARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRL--HTRRIADYGGVVNVMPWFATFAML 387
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + AG P T GF +F + F+ +
Sbjct: 388 FYMANAGLPGTSGFVGEFMVILASFQKHPL 417
>gi|170729501|ref|YP_001774934.1| NADH dehydrogenase subunit M [Xylella fastidiosa M12]
gi|167964294|gb|ACA11304.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12]
Length = 501
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/381 (51%), Positives = 281/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ +WI ++I Y LG+DG+++ + LT +T+++++ S I +++ +Y++AFLIL G+
Sbjct: 63 EQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IG F A D MLFY+FFEA LIP+F+IIG WGG R YAAIKFFLYT +GS+LML+ +IY
Sbjct: 123 TIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + + ++ EQ WLF F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-LKGGSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS+ F+ ++I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLGIF+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 302 YSSIAHMGFVTLGIFISFTLARDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ TR I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + +
Sbjct: 362 RLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 422 AGATLVITAAYTLWLYKRVFF 442
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV---------------- 151
I ++GL+ ++Q D+K++IAYS+++ +G++T+G+ +S +T+
Sbjct: 279 SLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFIS-FTLARDFGNTDAARLGLQG 337
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 338 AMVQMISHGFVSGAMFTCIG-VLYDRLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLP 396
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 397 GTSGFVGE 404
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 26/271 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ L S ML G+ LY G+ +L ++ ++L+ + L + L +
Sbjct: 161 AAIKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLY-AMQLSAKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + +
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + I IS + + F +
Sbjct: 273 WVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFISFTLARD----FGNT 328
Query: 806 DS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
D+ + +I++ F F I +L + T + + G+ PW A M
Sbjct: 329 DAARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRL--HTRRIADYGGVVNVMPWFATFAM 386
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+F + AG P T GF +F + F+ +
Sbjct: 387 LFYMANAGLPGTSGFVGEFMVILASFQKHPL 417
>gi|378825590|ref|YP_005188322.1| NADH dehydrogenase I subunit M [Sinorhizobium fredii HH103]
gi|365178642|emb|CCE95497.1| NADH dehydrogenase I, M subunit [Sinorhizobium fredii HH103]
Length = 503
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/369 (51%), Positives = 278/369 (75%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LGIDG+S+ F+PLTAF+ +L S + I+K+L EYM AFL+L L
Sbjct: 68 EKHEWLGT-GISYHLGIDGISVLFLPLTAFLMPFCVLASWVTIEKRLKEYMIAFLLLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+FIIIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MLGVFVSLDIVLFYVFFEAGLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + + + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITELLKYNFPRQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LKLG YG LRFSLP+FP AS YF+ + TLS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGILLKLGGYGFLRFSLPMFPLASDYFAPFVYTLSIIAIIYTSLVAMMQSDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+G F +QGAI QM+SH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGTFAANIQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F++F++AN LPGTSGF+GE + ++ A + N + + ++ +I SAAY+
Sbjct: 366 LVNNMPKYAVAFMVFTMANVGLPGTSGFVGEVLTLVGAFRANTWVALFATSGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F L++ + ++
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASDYFAPFVYT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+I A + L+ ++Q+DIK++IAYS+++ +GY+T+G + +IF +++H
Sbjct: 282 LSIIAIIYTSLVAMMQSDIKKLIAYSSVAHMGYVTMGTFAANIQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGF 393
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 29/260 (11%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
K+ +++S K+F+ +L S ML I +Y GT ++ + N +
Sbjct: 160 KDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTTDITELLKY----NFPRQMQTWL 212
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKC 737
L + K+ + P H W+PD + G+ I+ +LL KL + + L
Sbjct: 213 WLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KLGGYGFLRFSL--P 266
Query: 738 LLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSH 796
+ PL ++ + L+I ++I ++ A+ Q + K++IAYSS+AHMG + +
Sbjct: 267 MFPLASDYFAPFVYTLSIIAIIYTSLVAMMQSDIKKLIAYSSVAHMGYVTMGTFAANIQG 326
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
IF G+ + GA + + + + + T E+ + GL P A+
Sbjct: 327 VQGAIFQMLSHGI---------VSGALFLCVGVVYDRLH-TREIAAYGGLVNNMPKYAVA 376
Query: 857 MMIFMFSLAGFPPTIGFYAK 876
M+F + G P T GF +
Sbjct: 377 FMVFTMANVGLPGTSGFVGE 396
>gi|395781515|ref|ZP_10461933.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella rattimassiliensis 15908]
gi|395420948|gb|EJF87206.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella rattimassiliensis 15908]
Length = 498
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/361 (54%), Positives = 274/361 (75%), Gaps = 4/361 (1%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + +K+KL YM AFL+L IIG FCALD
Sbjct: 85 GISYHMGVDGISILFVVLSAFLLPFCILASWENVKEKLKAYMIAFLLLEVAIIGVFCALD 144
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK-S 347
+LFY+FFE +LIP+FIIIG WGG+ R YA+IKFFLYTL+GS+LML++++ +Y+ +
Sbjct: 145 AILFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLMLVALMAMYWDAGTLD 204
Query: 348 FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIML 407
L H + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++L
Sbjct: 205 LPTLLNHPFPVHM--QIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLL 262
Query: 408 KLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMG 467
KLG YG LRFSLP+FP AS F+ L+ LSLI+IIY SL+A+VQ DIKKLIAYSSIAHMG
Sbjct: 263 KLGGYGFLRFSLPMFPIASADFAPLVFILSLIAIIYTSLVALVQNDIKKLIAYSSIAHMG 322
Query: 468 FVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHF 527
+VT+GIF + IQGAI QM+SH ++S+A+F+ +G +Y+++ TR I+ FGG++N +P +
Sbjct: 323 YVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREIAAFGGLVNNMPKY 382
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
+V F+IF++AN LPG+SGF+GEF+ ++ + N + +L +T +I SAAY+L L + ++
Sbjct: 383 AVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVILATTGVILSAAYALYLYRRVV 442
Query: 588 F 588
F
Sbjct: 443 F 443
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++FI
Sbjct: 232 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFI 290
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 291 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 348 IVSAALFLCVG-VIYDRLHTREIAAFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGE 405
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 150/358 (41%), Gaps = 61/358 (17%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL+L ++ N + + L
Sbjct: 174 ASIKFFLYTLLGSVLMLVALMAMYWDAGTLDLPTLLN----HPFPVHMQIWLWLAFFASF 229
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 230 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 281
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ IL++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 282 ADFAPLVFILSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIY 341
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 342 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREIAAFGGLVNNMPKYAVVFLIFTM 391
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYI 922
+ G P + GF +F +F+ K+ ++L A G I+
Sbjct: 392 ANVGLPGSSGFLGEFLTLIGVFQVNKLVVIL---------ATTGVILSAA---------- 432
Query: 923 VEAIKAARKSALIINRGSLELENLR--FEEKKYENFVFNINKASEKIITKILFNTYPS 978
A+ R+ GSL+ ENL+ + E F+ ++ I F YP+
Sbjct: 433 -YALYLYRRVVF----GSLDKENLKVLIDLSSREKFIL-----YPMVVLTIFFGIYPT 480
>gi|402819258|ref|ZP_10868827.1| hypothetical protein IMCC14465_00610 [alpha proteobacterium
IMCC14465]
gi|402511962|gb|EJW22222.1| hypothetical protein IMCC14465_00610 [alpha proteobacterium
IMCC14465]
Length = 497
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/360 (53%), Positives = 266/360 (73%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ FI LT + + IL S + IK ++ EYM AFL+L L+IG FCA D
Sbjct: 76 GIDYVMGVDGISVLFIILTTSLMPLCILASWESIKTRVREYMVAFLVLETLMIGVFCAQD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFEA LIP+F+IIG WGG+ R YA+ KFFLYTL+GS+LML+++IY+Y+ +
Sbjct: 136 LLLFYLFFEAGLIPMFMIIGIWGGARRVYASFKFFLYTLLGSVLMLLALIYMYWQVGTT- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
N+ T EQ WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 195 NMTELANFQFTSTEQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG LRFSLP+FP AS F+ L+ LS+I+IIY SL+A+ Q D+KKLIAYSS+AHMGF
Sbjct: 255 MGGYGFLRFSLPMFPLASDMFTELVFALSVIAIIYTSLVALAQEDMKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF T+ +QGAI QM+SH IS A+F+ +G +Y++M TR I+ +GG+ N +P ++
Sbjct: 315 VTMGIFAATQQGVQGAIFQMLSHGWISGALFLCVGVIYDRMHTREIAAYGGLANRMPIYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++AN LPGTSGF+GEF+ I+ + + +L +T +I SA Y+L L + I F
Sbjct: 375 AVFMLFTMANVGLPGTSGFVGEFLTIIGTFQVSTWTALLAATGVILSACYALTLYRKISF 434
Score = 90.1 bits (222), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSLPMFPLASDMFTELVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVIAIIYTSLVALAQEDMKKLIAYSSVAHMGFVTMGIFAATQQGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ LFL G +I + H ++I GGL MPI ++ ++ VG P SGF +
Sbjct: 339 WISGALFLCVG-VIYDRMHTREIAAYGGLANRMPIYAAVFMLFTMANVGLPGTSGFVGE 396
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 40/318 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT + + N + + + L L+
Sbjct: 165 ASFKFFLYTLLGSVLMLLALIYMYWQVGTTNMTELAN-FQFTSTEQTWLWLAFF---ASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN-WQKIL 749
+ K+ + P H W+PD + A +++L+ L + + + PL + + +++
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV-LLKMGGYGFLRFSLPMFPLASDMFTELV 279
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ ++I ++ A+ Q + K++IAYSS+AHMG + I + IF G
Sbjct: 280 FALSVIAIIYTSLVALAQEDMKKLIAYSSVAHMGFVTMGIFAATQQGVQGAIFQMLSHG- 338
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
+I +F +G +I + + T E+ + GL R P A + M+F + G P
Sbjct: 339 -WISGALFLCVG----VIYDRMH----TREIAAYGGLANRMPIYAAVFMLFTMANVGLPG 389
Query: 870 TIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYIVEAIKAA 929
T GF +F F+ W LL A G I+ C A+
Sbjct: 390 TSGFVGEFLTIIGTFQVST-WTALL--------AATGVILSAC-----------YALTLY 429
Query: 930 RKSALIINRGSLELENLR 947
RK I+ G+LE E L+
Sbjct: 430 RK----ISFGALENEALQ 443
>gi|71275678|ref|ZP_00651963.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella
fastidiosa Dixon]
gi|71163569|gb|EAO13286.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella
fastidiosa Dixon]
gi|71732333|gb|EAO34387.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella
fastidiosa Ann-1]
Length = 501
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/381 (51%), Positives = 281/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ +WI ++I Y LG+DG+++ + LT +T+++++ S I +++ +Y++AFLIL G+
Sbjct: 63 EQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IG F A D MLFY+FFEA LIP+F+IIG WGG R YAAIKFFLYT +GS+LML+ +IY
Sbjct: 123 TIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + + ++ EQ WLF F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-LKGGSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDAS+ F+ ++I LSLI++IY+ L+A+VQ D+KKLIA
Sbjct: 242 VILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGFVTLGIF+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 302 YSSIAHMGFVTLGIFISFTLARDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++ TR I+++GG++NV+P F+ F ++F +AN LPGTSGF+GEFM+IL++ + + +
Sbjct: 362 RLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFG 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K + F
Sbjct: 422 AGATLVITAAYTLWLYKRVFF 442
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K FP+HTWLPD+ +E PT S ++ A + G F+ + + + S+ +++ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---------------AYTVS 152
I ++GL+ ++Q D+K++IAYS+++ +G++T+G+ +S +
Sbjct: 279 SLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFISFTLARDFGNTDAARLGLQGA 338
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+ +++H F +F G ++ + H + I + GG+ MP +++ ++ G P
Sbjct: 339 MVQMISHGFVSGAMFTCIG-VLYDRLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLPG 397
Query: 213 FSGFYSK 219
SGF +
Sbjct: 398 TSGFVGE 404
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 26/271 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F+ L S ML G+ LY G+ +L ++ ++L+ + L + L +
Sbjct: 161 AAIKFFLYTFLGSVLMLVGLIYLYLKGGSFQLADLY-AMQLSAKEQTWLFFAFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+V + +
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPIVPDASHEFA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-ISIKTSHNNLIIFNSC 805
+++ L++ ++I + A+ Q + K++IAYSSIAHMG + I IS + + F +
Sbjct: 273 WVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFISFTLARD----FGNT 328
Query: 806 DS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
D+ + +I++ F F I +L + T + + G+ PW A M
Sbjct: 329 DAARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRL--HTRRIADYGGVVNVMPWFATFAM 386
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+F + AG P T GF +F + F+ +
Sbjct: 387 LFYMANAGLPGTSGFVGEFMVILASFQKHPL 417
>gi|406942989|gb|EKD75086.1| hypothetical protein ACD_44C00231G0001 [uncultured bacterium]
Length = 505
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 281/382 (73%), Gaps = 14/382 (3%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
+ +WI NIYYFLGIDG+SL I LT FITL+++L + I +K+ +Y++AFLI+ G
Sbjct: 65 QESSVWIQPLNIYYFLGIDGISLPMILLTCFITLLVVLDAWHTIHEKITQYLAAFLIMQG 124
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
+I+G F ALD +LFY+F+EA LIP+++ IG WG NR YA+IKFF+YT GS LML++++
Sbjct: 125 IIVGVFSALDSILFYVFWEAMLIPMYLAIGIWGSQNRFYASIKFFIYTFFGSALMLVALL 184
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YL Y +N SF+IL ++ + + + Q +F F +AFAIKIP++P+HTWLPDAH EAP G
Sbjct: 185 YLRYKAN-SFSILDFYSVQLNMLPQTLIFFAFLLAFAIKIPMFPVHTWLPDAHTEAPAGG 243
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILAAIMLK+G YG LRFS PI PDA +F L+I LSL +IIYI IA++Q D+K+LI
Sbjct: 244 SVILAAIMLKIGAYGFLRFSFPIVPDACKHFDLLLIILSLFAIIYIGFIAIIQKDMKRLI 303
Query: 459 AYSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLY 506
AYSSIAHMGFVTLG F + +I SI+GA++QM+SH S+A+F+ +G LY
Sbjct: 304 AYSSIAHMGFVTLGCFSIYRIVEHSKNISAALMSIEGAMVQMVSHGFSSAALFLGVGILY 363
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+Q+ TRLI ++GG+ N +P F+ FF++F +AN LPGTSGF+GEFM+ILS+ + N I
Sbjct: 364 HQLHTRLIKDYGGVANTMPVFAAFFMLFMMANVGLPGTSGFVGEFMVILSSFQANPWIAF 423
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
L ++ ++ SAAYSL + K + +
Sbjct: 424 LATSTVVLSAAYSLWMYKRVFY 445
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 18/184 (9%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K FP+HTWLPD+ ++I AA M+ G + R S P+ + ++L I
Sbjct: 222 KIPMFPVHTWLPDAHTEAPAGGSVILAAIMLKIGAYGFLRFSFPIVPDACKHFDLLLIIL 281
Query: 109 AITAFFMGLLGII-QNDIKRIIAYSTLSQLGYMTVGL-----------GVSAYTVSI--- 153
++ A I Q D+KR+IAYS+++ +G++T+G +SA +SI
Sbjct: 282 SLFAIIYIGFIAIIQKDMKRLIAYSSIAHMGFVTLGCFSIYRIVEHSKNISAALMSIEGA 341
Query: 154 -FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+++H F A LFL G I+ + H + I++ GG+ MP+ ++ +++ VG P
Sbjct: 342 MVQMVSHGFSSAALFLGVG-ILYHQLHTRLIKDYGGVANTMPVFAAFFMLFMMANVGLPG 400
Query: 213 FSGF 216
SGF
Sbjct: 401 TSGF 404
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 32/298 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I +N ++S IK+FI S ML + L + + ++V
Sbjct: 146 LIPMYLAIGIWGSQNRFYAS---IKFFIYTFFGSALMLVALLYLRYKANSFSILDFYSV- 201
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLS 725
+LN + +++ + LL + K+ + P H W+PD + G S+I+ ++
Sbjct: 202 QLNMLPQTLIFFAFLL---AFAIKIPMFPVHTWLPDAHTEAPAGGSVILAAIM------- 251
Query: 726 LFVIIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
L + Y L + P+V + K +L+IL++F++I AI Q + KR+IAYSSIAH
Sbjct: 252 LKIGAYGFL-RFSFPIVPDACKHFDLLLIILSLFAIIYIGFIAIIQKDMKRLIAYSSIAH 310
Query: 782 MGLMLFSIISI----KTSHNNLIIFNSCDSGLFYIITYIFAILGAF-GVIILLKNNTCNK 836
MG + SI + S N S + + ++++ F+ F GV IL
Sbjct: 311 MGFVTLGCFSIYRIVEHSKNISAALMSIEGAMVQMVSHGFSSAALFLGVGILYHQ---LH 367
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLL 894
T + + G+ P A M+FM + G P T GF +F + F+ W+ L
Sbjct: 368 TRLIKDYGGVANTMPVFAAFFMLFMMANVGLPGTSGFVGEFMVILSSFQANP-WIAFL 424
>gi|426401078|ref|YP_007020050.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Candidatus Endolissoclinum patella L2]
gi|425857746|gb|AFX98782.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Candidatus Endolissoclinum patella L2]
Length = 499
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/382 (50%), Positives = 277/382 (72%), Gaps = 9/382 (2%)
Query: 215 GFYSKDKKKI-------WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
F+ +D K WI + Y +G+DG+S+WF+ ++ +T I IL S + I+K++
Sbjct: 50 AFFEQDSAKFQLVQKINWIPSLSSSYHIGVDGISIWFVMMSTLLTPICILASWEAIQKRV 109
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
EYM AFL+L ++IG FCALD +LFYIFFEA LIPIF+IIG WGG +R YAA KFFLYT
Sbjct: 110 REYMIAFLVLESMMIGMFCALDILLFYIFFEALLIPIFLIIGVWGGVHRFYAAFKFFLYT 169
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML+++I +Y + + N+L+ Q Q WL++ FF +FA+K+P+WP+HTW
Sbjct: 170 LVGSVLMLLAIISMYCYTGTT-NLLTLMQTRFLPEMQTWLWLAFFFSFAVKVPMWPLHTW 228
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSV+LA I+LK+G YG LRFS+PIFP+AS F+ ++ LS++S+IY SL
Sbjct: 229 LPDAHVEAPTAGSVMLAGILLKIGGYGFLRFSIPIFPEASADFTPMVYALSVMSVIYTSL 288
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+VQ D+KK+IAYSS+AHMGFVT+GIF + + + G+I M+SH ++SSA+F+ +G +Y
Sbjct: 289 VALVQQDMKKMIAYSSVAHMGFVTVGIFTMNIMGVDGSIFYMLSHGIVSSALFLCVGVIY 348
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++M+ R I +GGI +P +++ F+IF LA+ LPGTSGFIGE +I+ A + N I
Sbjct: 349 DRMRIREIKFYGGIAKNMPRYAMIFMIFMLASVGLPGTSGFIGELLILTGAFQVNTWIAA 408
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
T++ LI AAY L L + ++F
Sbjct: 409 FTASGLILGAAYMLYLYRRVLF 430
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD+ +E PT S ++ A ++ G + R S P+F E S ++
Sbjct: 219 KVPMWPLHTWLPDAHVEAPTAGSVML-AGILLKIGGYGFLRFSIPIFPEASADFTPMVYA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ ++ + L+ ++Q D+K++IAYS+++ +G++TVG + + SIF++++H
Sbjct: 278 LSVMSVIYTSLVALVQQDMKKMIAYSSVAHMGFVTVGIFTMNIMGVDGSIFYMLSHGIVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G I M+ ++I+ GG+ K MP + +I +L+ VG P SGF
Sbjct: 338 SALFLCVGVIYDRMR-IREIKFYGGIAKNMPRYAMIFMIFMLASVGLPGTSGF 389
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 16/256 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ ++ S ML I +Y TGT L ++ L + + L
Sbjct: 161 AAFKFFLYTLVGSVLMLLAIISMYCYTGTTNLLTLMQTRFLPEMQTWLW----LAFFFSF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ K+ + + R I ++ ++
Sbjct: 217 AVKVPMWPLHTWLPDAHVEAPTAGSVMLAGILLKIGGYGFL-RFSIPIFPEASADFTPMV 275
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ S+I ++ A+ Q + K+MIAYSS+AHMG + I ++ D +
Sbjct: 276 YALSVMSVIYTSLVALVQQDMKKMIAYSSVAHMGFVTVGIFTMN--------IMGVDGSI 327
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
FY++++ F + ++ + + E+ + G+ + P A+I MIFM + G P
Sbjct: 328 FYMLSHGIVSSALFLCVGVIYDRM--RIREIKFYGGIAKNMPRYAMIFMIFMLASVGLPG 385
Query: 870 TIGFYAKFFIFEKIFE 885
T GF + I F+
Sbjct: 386 TSGFIGELLILTGAFQ 401
>gi|91761985|ref|ZP_01263950.1| NADH dehydrogenase subunit M [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717787|gb|EAS84437.1| NADH dehydrogenase subunit M [Candidatus Pelagibacter ubique
HTCC1002]
Length = 497
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/359 (54%), Positives = 280/359 (77%), Gaps = 2/359 (0%)
Query: 231 IYYFLGIDGLSLWFIPLTAFIT-LIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDG 289
I Y +GIDG+S+ FI LTA IT L II ++ +K +L +++ A L++ L+IG FC+LD
Sbjct: 73 INYKIGIDGISILFIVLTALITPLCIISVNNTVKDRLRDFLIAILVMESLMIGVFCSLDL 132
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFN 349
++FY+FFEA LIP+F+IIG WGG+ R Y+A KFFLYTL+GS+LMLI++I +Y+IS + +
Sbjct: 133 VIFYLFFEAGLIPMFLIIGIWGGARRVYSAFKFFLYTLLGSVLMLIAIISIYWISGTT-D 191
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
I ++L I Q L++ FF +FA+K P+WP+HTWLPDAHVEAPT GSV+LAAI+LK+
Sbjct: 192 ITQLYELGIDTKYQNLLWLAFFSSFAVKTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKM 251
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
YG +RFSL +FP AS F+ L+ LSLI+I+Y SL+A++Q D+KKLIAYSS+AHMGFV
Sbjct: 252 AGYGFIRFSLGLFPVASDLFTPLVYALSLIAIVYTSLVALMQEDMKKLIAYSSVAHMGFV 311
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
TLGIF +T+ I+G+I+QMISH L+S+A+F+ +G +Y++M +RLI+ +GG+++V+P +S+
Sbjct: 312 TLGIFTITQQGIEGSIVQMISHGLVSAALFLCVGVVYDRMHSRLIATYGGLVSVMPKYSI 371
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F+LA LPGTSGFIGEF+I++ A K NF + V+ S +IF AAY L L + ++F
Sbjct: 372 LFMLFTLAALGLPGTSGFIGEFLILMGAFKDNFLVAVIASLGVIFGAAYMLWLYRRVVF 430
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILF-I 107
K+ +P+HTWLPD+ +E PT S L+ A + AG I LF +++ + +++ +
Sbjct: 219 KTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFIRFSLGLFPVASDLFTPLVYAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ SI +++H
Sbjct: 279 SLIAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTLGIFTITQQGIEG---SIVQMISHGL 335
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G ++ + H++ I GGL MP I ++ L+ +G P SGF
Sbjct: 336 VSAALFLCVG-VVYDRMHSRLIATYGGLVSVMPKYSILFMLFTLAALGLPGTSGF 389
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
+A K+F+ +L S ML I +Y I+GT ++ ++ + I+ L L
Sbjct: 161 SAFKFFLYTLLGSVLMLIAIISIYWISGTTDITQLYEL----GIDTKYQNLLWLAFFSSF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVIN-WQKI 748
+ K + P H W+PD + A ++LL+ K++ + I L L P+ + + +
Sbjct: 217 AVKTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFIRFSL--GLFPVASDLFTPL 274
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I +I I G
Sbjct: 275 VYALSLIAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTLGIFTITQQGIEGSIVQMISHG 334
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
L A+ GV+ ++ T + GL P +++ M+F + G P
Sbjct: 335 LVSA-----ALFLCVGVVYDRMHSRLIAT-----YGGLVSVMPKYSILFMLFTLAALGLP 384
Query: 869 PTIGFYAKFFIFEKIFE 885
T GF +F I F+
Sbjct: 385 GTSGFIGEFLILMGAFK 401
>gi|217979061|ref|YP_002363208.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylocella silvestris BL2]
gi|217504437|gb|ACK51846.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylocella silvestris BL2]
Length = 503
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/376 (52%), Positives = 276/376 (73%), Gaps = 4/376 (1%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSA 272
SGF ++K W + Y LG+DG+S+ F+ LT F+ I S I ++ +YM A
Sbjct: 62 SGFQLVEQKG-WFGS-GLIYKLGVDGVSIPFVLLTGFLMPFCIAASWKSITYRVKDYMIA 119
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L +++G FCALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GSLL
Sbjct: 120 FLVLETMMLGVFCALDLVLFYLFFEGGLIPMFLIIGIWGGKRRVYASFKFFLYTLVGSLL 179
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++++ +Y + + +I+ S Q WLF+ FF + A+K+P+WP+HTWLPDAHV
Sbjct: 180 MLLAIMAMYGFAGTT-DIVQLLATSFPASMQKWLFLAFFASLAVKMPMWPVHTWLPDAHV 238
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSVILA I+LK+G YG +RFSLP+FPDAS YF+ LI LS+I+IIY SL+A+VQ
Sbjct: 239 EAPTAGSVILAGILLKMGGYGFIRFSLPMFPDASAYFAPLIYALSIIAIIYTSLVALVQE 298
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSS+AHMGFVT+G+F +T+ +QGA+ QMISH L+S A+F+ +G +Y++M TR
Sbjct: 299 DMKKLIAYSSVAHMGFVTMGLFTMTEQGVQGAMFQMISHGLVSGALFLCVGVVYDRMHTR 358
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG++ +P ++V F+IF++AN LPGTSGFIGEF+ +L + N IG+ +T +
Sbjct: 359 DIAAYGGLVARMPLYAVVFMIFTMANVGLPGTSGFIGEFLTLLGGFRVNSWIGLFATTGV 418
Query: 573 IFSAAYSLCLSKNIIF 588
I SAAY+L L + ++F
Sbjct: 419 ILSAAYALFLYRRVVF 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 101/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRFSLPMFPDASAYFAPLIYA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q D+K++IAYS+++ +G++T+GL GV ++F +++H
Sbjct: 282 LSIIAIIYTSLVALVQEDMKKLIAYSSVAHMGFVTMGLFTMTEQGVQG---AMFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H +DI GGL MP+ + +I ++ VG P SGF
Sbjct: 339 LVSGALFLCVG-VVYDRMHTRDIAAYGGLVARMPLYAVVFMIFTMANVGLPGTSGF 393
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 39/290 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K +++S K+F+ ++ S ML I +YG
Sbjct: 135 DLVLFYLFFEGGLIPMFLIIGIWGGKRRVYAS---FKFFLYTLVGSLLMLLAIMAMYGFA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT ++ + + S+ L L+ K+ + P H W+PD + A +++
Sbjct: 192 GTTDIVQLLA----TSFPASMQKWLFLAFFASLAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ ++ I+ LP+ + + ++ L+I ++I ++ A+ Q +
Sbjct: 248 LAG--------ILLKMGGYGFIRFSLPMFPDASAYFAPLIYALSIIAIIYTSLVALVQED 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSS+AHMG + + ++ +F GL G + L
Sbjct: 300 MKKLIAYSSVAHMGFVTMGLFTMTEQGVQGAMFQMISHGLVS------------GALFLC 347
Query: 830 KNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
++ DI + GL R P A++ MIF + G P T GF +F
Sbjct: 348 VGVVYDRMHTRDIAAYGGLVARMPLYAVVFMIFTMANVGLPGTSGFIGEF 397
>gi|374292600|ref|YP_005039635.1| NADH-quinone oxidoreductase subunit M [Azospirillum lipoferum 4B]
gi|357424539|emb|CBS87418.1| NADH-quinone oxidoreductase, subunit M [Azospirillum lipoferum 4B]
Length = 508
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/373 (48%), Positives = 277/373 (74%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y +K WI F I Y +G+DG+S+ F+ L+ F+ + IL S + ++ ++ EYM AFL
Sbjct: 65 YQMVEKAGWIPEFGINYHMGVDGISVLFVVLSGFLMPLCILASWESVQVRVKEYMMAFLA 124
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L L+IG FCALD +LFY+FFE LIP+F+IIG WGG R YAA KFFLYTL+GS+LML+
Sbjct: 125 LETLMIGMFCALDFVLFYMFFEGVLIPMFLIIGVWGGPRRVYAAFKFFLYTLLGSVLMLL 184
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++ +Y+++ + +I + + Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 185 AILAMYFVAGTT-DIPTITATQFPRNMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAP 243
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG LRF++PI P+A+ YF+ LI TLS++++IY SL+A+ Q D+K
Sbjct: 244 TAGSVILAGVLLKMGGYGFLRFNIPILPEATEYFAPLIYTLSVVAVIYTSLVALAQEDMK 303
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMGFVT+G+F L + I+G++ QM+SH ++S A+F+ +G +Y+++ TR IS
Sbjct: 304 KLIAYSSVAHMGFVTIGMFALNQQGIEGSVFQMLSHGVVSGALFLCVGVVYDRLHTREIS 363
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++ +P ++V F+ ++A+ LPGT+GF+GEF+++L + N + L +T ++
Sbjct: 364 RYGGLVKNMPKYAVVFLFMTMASVGLPGTAGFVGEFLVLLGVFQDNTWVAALAATGMVLG 423
Query: 576 AAYSLCLSKNIIF 588
AAY+L L + I++
Sbjct: 424 AAYALWLYRRIVY 436
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 6/175 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI-FMITRMSPLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ + G F+ + L E + +I +
Sbjct: 225 KVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFNIPILPEATEYFAPLIYTL 284
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFKA 164
+ + L+ + Q D+K++IAYS+++ +G++T+G L S+F +++H
Sbjct: 285 SVVAVIYTSLVALAQEDMKKLIAYSSVAHMGFVTIGMFALNQQGIEGSVFQMLSHGVVSG 344
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL K MP + L ++ VG P +GF +
Sbjct: 345 ALFLCVG-VVYDRLHTREISRYGGLVKNMPKYAVVFLFMTMASVGLPGTAGFVGE 398
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 124/274 (45%), Gaps = 17/274 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML I +Y + GT ++ +I N+ + L
Sbjct: 167 AAFKFFLYTLLGSVLMLLAILAMYFVAGTTDIPTITATQFPRNMQLWLW----LAFFASF 222
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ K+ + + R I L + ++
Sbjct: 223 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFL-RFNIPILPEATEYFAPLI 281
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ ++I ++ A+ Q + K++IAYSS+AHMG + + ++ +F G+
Sbjct: 282 YTLSVVAVIYTSLVALAQEDMKKLIAYSSVAHMGFVTIGMFALNQQGIEGSVFQMLSHGV 341
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
+ GA + + + + + T E+ + GL + P A++ + + G P
Sbjct: 342 ---------VSGALFLCVGVVYDRLH-TREISRYGGLVKNMPKYAVVFLFMTMASVGLPG 391
Query: 870 TIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
T GF +F + +F+ W+ L ++GA
Sbjct: 392 TAGFVGEFLVLLGVFQ-DNTWVAALAATGMVLGA 424
>gi|154248540|ref|YP_001419498.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Xanthobacter autotrophicus Py2]
gi|154162625|gb|ABS69841.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Xanthobacter autotrophicus Py2]
Length = 503
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/416 (47%), Positives = 292/416 (70%), Gaps = 3/416 (0%)
Query: 174 IINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYY 233
I+ ++ + ++ + + T +T ++ LL L G + + +KK W+ Y+
Sbjct: 21 ILVVRGDDEVTARNARWVALWTTLVTFVVSLLLLPGFDSAASGFQFVEKKAWLGELAAYH 80
Query: 234 FLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLF 292
+G+DG+SL F+ LT F+ IL S + + K++ EYM AFL+L L+IG FCALD +LF
Sbjct: 81 -MGVDGISLPFVILTTFLMPFCILASWESVHKRVKEYMIAFLVLETLMIGTFCALDLVLF 139
Query: 293 YIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILS 352
Y FFE LIP+F+IIG WGG R YAA KFFLYTL GS+LM+++++ +Y+ S + ++ +
Sbjct: 140 YFFFEGGLIPMFLIIGIWGGQRRIYAAFKFFLYTLAGSVLMMLAIMAMYWQSGTT-DVPT 198
Query: 353 WHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCY 412
Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK+G Y
Sbjct: 199 LLTHGFPSGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGY 258
Query: 413 GLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLG 472
G LR+SLP+FP+AS+YF+ L+ TLS+++IIY SL+A+VQ DIKKLIAYSSIAHMGFVT+G
Sbjct: 259 GFLRYSLPMFPEASHYFAPLVFTLSVVAIIYTSLVALVQEDIKKLIAYSSIAHMGFVTMG 318
Query: 473 IFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFI 532
IF + + +QGA+ MISH +S A+F+ +G +Y+++ TR I+ +GG+++ +P ++ +
Sbjct: 319 IFAMNEQGLQGAMFLMISHGFVSGALFLCVGVIYDRLHTREIAAYGGLVHRMPLYATVLM 378
Query: 533 IFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
IF++AN LPGTSGFIGEF+ +L+A + N I +T +I SA Y+L L +IF
Sbjct: 379 IFTMANVGLPGTSGFIGEFLTMLAAFERNTWIAFFAATGVILSAGYALWLYLRVIF 434
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F E S+ ++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRYSLPMFPEASHYFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q DIK++IAYS+++ +G++T+G + ++F +++H F
Sbjct: 282 LSVVAIIYTSLVALVQEDIKKLIAYSSIAHMGFVTMGIFAMNEQGLQGAMFLMISHGFVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF------- 216
LFL G +I + H ++I GGL MP+ +I ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRLHTREIAAYGGLVHRMPLYATVLMIFTMANVGLPGTSGFIGEFLTM 400
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLW 243
+ ++ WI +F + G +LW
Sbjct: 401 LAAFERNTWIAFFAATGVILSAGYALW 427
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 121/265 (45%), Gaps = 23/265 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ + S M+ I +Y +GT ++ ++ + + L
Sbjct: 165 AAFKFFLYTLAGSVLMMLAIMAMYWQSGTTDVPTLLT----HGFPSGMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ L + ++ LP+ +
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV----LLKMGGYGFLRYSLPMFPEASHYFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ L++ ++I ++ A+ Q + K++IAYSSIAHMG + I ++
Sbjct: 277 PLVFTLSVVAIIYTSLVALVQEDIKKLIAYSSIAHMGFVTMGIFAMNE--------QGLQ 328
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
+F +I++ F + GA + + + + + T E+ + GL R P A ++MIF + G
Sbjct: 329 GAMFLMISHGF-VSGALFLCVGVIYDRLH-TREIAAYGGLVHRMPLYATVLMIFTMANVG 386
Query: 867 FPPTIGFYAKFFIFEKIFETQKIWL 891
P T GF +F FE + W+
Sbjct: 387 LPGTSGFIGEFLTMLAAFE-RNTWI 410
>gi|71083594|ref|YP_266313.1| NADH dehydrogenase subunit M [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062707|gb|AAZ21710.1| NADH Dehydrogenase I Chain M [Candidatus Pelagibacter ubique
HTCC1062]
Length = 497
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/359 (54%), Positives = 280/359 (77%), Gaps = 2/359 (0%)
Query: 231 IYYFLGIDGLSLWFIPLTAFIT-LIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDG 289
I Y +GIDG+S+ FI LTA IT L II ++ +K +L +++ A L++ L+IG FC+LD
Sbjct: 73 INYKIGIDGISILFIVLTALITPLCIISVNNTVKDRLRDFLIAILVMESLMIGVFCSLDL 132
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFN 349
++FY+FFEA LIP+F+IIG WGG+ R Y+A KFFLYTL+GS+LMLI++I +Y+IS + +
Sbjct: 133 VIFYLFFEAGLIPMFLIIGIWGGARRVYSAFKFFLYTLLGSVLMLIAIISIYWISGTT-D 191
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
I ++L I Q L++ FF +FA+K P+WP+HTWLPDAHVEAPT GSV+LAAI+LK+
Sbjct: 192 ITQLYELGIDTKYQNLLWLAFFSSFAVKTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKM 251
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
YG +RFSL +FP AS F+ L+ LSLI+I+Y SL+A++Q D+KKLIAYSS+AHMGFV
Sbjct: 252 AGYGFIRFSLGLFPVASDLFTPLVYALSLIAIVYTSLVALMQEDMKKLIAYSSVAHMGFV 311
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
TLGIF +T+ I+G+I+QMISH L+S+A+F+ +G +Y++M +RLI+ +GG+++V+P +S+
Sbjct: 312 TLGIFTITQQGIEGSIVQMISHGLVSAALFLCVGVVYDRMHSRLIATYGGLVSVMPKYSI 371
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F+LA LPGTSGFIGEF+I++ A K NF + V+ S +IF AAY L L + ++F
Sbjct: 372 LFMLFTLAALGLPGTSGFIGEFLILMGAFKDNFLVAVIASLGVIFGAAYMLWLYRRVVF 430
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILF-I 107
K+ +P+HTWLPD+ +E PT S L+ A + AG I LF +++ + +++ +
Sbjct: 219 KTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFIRFSLGLFPVASDLFTPLVYAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ SI +++H
Sbjct: 279 SLIAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTLGIFTITQQGIEG---SIVQMISHGL 335
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G ++ + H++ I GGL MP I ++ L+ +G P SGF
Sbjct: 336 VSAALFLCVG-VVYDRMHSRLIATYGGLVSVMPKYSILFMLFTLAALGLPGTSGF 389
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
+A K+F+ +L S ML I +Y I+GT ++ ++ + I+ L L
Sbjct: 161 SAFKFFLYTLLGSVLMLIAIISIYWISGTTDITQLYEL----GIDTKYQNLLWLAFFSSF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVIN-WQKI 748
+ K + P H W+PD + A ++LL+ K++ + I L L P+ + + +
Sbjct: 217 AVKTPMWPVHTWLPDAHVEAPTAGSVLLAAILLKMAGYGFIRFSL--GLFPVASDLFTPL 274
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I +I I G
Sbjct: 275 VYALSLIAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTLGIFTITQQGIEGSIVQMISHG 334
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
L A+ GV+ ++ T + GL P +++ M+F + G P
Sbjct: 335 LVSA-----ALFLCVGVVYDRMHSRLIAT-----YGGLVSVMPKYSILFMLFTLAALGLP 384
Query: 869 PTIGFYAKFFIFEKIFE 885
T GF +F I F+
Sbjct: 385 GTSGFIGEFLILMGAFK 401
>gi|227821631|ref|YP_002825601.1| NADH dehydrogenase subunit M [Sinorhizobium fredii NGR234]
gi|227340630|gb|ACP24848.1| NADH dehydrogenase I chain M [Sinorhizobium fredii NGR234]
Length = 503
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/369 (51%), Positives = 277/369 (75%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LGIDG+S+ F+PLTAF+ +L S + I+ +L EYM AFL+L L
Sbjct: 68 EKHEWLGT-GISYHLGIDGISVLFLPLTAFLMPFCVLASWVTIENRLKEYMIAFLLLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+FIIIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MLGVFVSLDIVLFYVFFEAGLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + + + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITELLKYNFPRQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LKLG YG LRFSLP+FP AS YF+ + TLS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGILLKLGGYGFLRFSLPMFPLASDYFAPFVYTLSIIAIIYTSLVAMMQSDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+G F +QGAI QM+SH ++S A+F+ +G +Y+++ TR IS +GG
Sbjct: 306 YSSVAHMGYVTMGTFAANIQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREISAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F++F++AN LPGTSGF+GE + ++ A + N + + ++ +I SAAY+
Sbjct: 366 LVNNMPKYAVAFMVFTMANVGLPGTSGFVGEVLTLVGAFRANTWVALFATSGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F L++ + ++
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASDYFAPFVYT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+I A + L+ ++Q+DIK++IAYS+++ +GY+T+G + +IF +++H
Sbjct: 282 LSIIAIIYTSLVAMMQSDIKKLIAYSSVAHMGYVTMGTFAANIQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREISAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 29/260 (11%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
K+ +++S K+F+ +L S ML I +Y GT ++ + N +
Sbjct: 160 KDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTTDITELLKY----NFPRQMQTWL 212
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKC 737
L + K+ + P H W+PD + G+ I+ +LL KL + + L
Sbjct: 213 WLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KLGGYGFLRFSL--P 266
Query: 738 LLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSH 796
+ PL ++ + L+I ++I ++ A+ Q + K++IAYSS+AHMG + +
Sbjct: 267 MFPLASDYFAPFVYTLSIIAIIYTSLVAMMQSDIKKLIAYSSVAHMGYVTMGTFAANIQG 326
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
IF G+ + GA + + + + + T E+ + GL P A+
Sbjct: 327 VQGAIFQMLSHGI---------VSGALFLCVGVVYDRLH-TREISAYGGLVNNMPKYAVA 376
Query: 857 MMIFMFSLAGFPPTIGFYAK 876
M+F + G P T GF +
Sbjct: 377 FMVFTMANVGLPGTSGFVGE 396
>gi|163759528|ref|ZP_02166613.1| NADH dehydrogenase subunit M [Hoeflea phototrophica DFL-43]
gi|162283125|gb|EDQ33411.1| NADH dehydrogenase subunit M [Hoeflea phototrophica DFL-43]
Length = 503
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/380 (51%), Positives = 278/380 (73%), Gaps = 8/380 (2%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +G+DG+S+ F+ LT F+ + IL S + ++ ++ EYM AFL+L ++IG FCALD +L
Sbjct: 79 YAMGVDGISMLFVILTTFLMPLCILASWNSVETRVREYMIAFLVLETMMIGVFCALDIVL 138
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP+FIIIG WGG R YA+ KFFLYTL GS+LML++++ +++ + + +I
Sbjct: 139 FYIFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAIMAMFWDAGTT-DIR 197
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LKLG
Sbjct: 198 ALLAHNFPAEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKLGG 257
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP AS F+ I LS+++IIY SL+A++Q DIKKLIAYSS+AHMGFVT+
Sbjct: 258 YGFLRFSLPMFPLASADFAPFIFVLSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTM 317
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF ++ +QGAI QM+SH LIS A+F+ +G +Y++M TR IS +GG++N +P ++V F
Sbjct: 318 GIFAANQLGVQGAIFQMLSHGLISGALFLCVGVVYDRMHTREISAYGGLVNNMPKYAVVF 377
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF--- 588
+IF++AN LPGTSGF+GEFM ++ + N + + +T +I SAAY+L L + ++F
Sbjct: 378 MIFTMANVGLPGTSGFVGEFMTLIGVFQANTWVALFAATGVILSAAYALWLYRRVVFGAL 437
Query: 589 ---VLGQMIMISGNNLLSIY 605
L M+ +SG IY
Sbjct: 438 EKESLKAMLDLSGREKAIIY 457
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F+
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASADFAPFIFV 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHA 160
++ A + L+ ++Q DIK++IAYS+++ +G++T+G LGV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAANQLGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + +I ++ VG P SGF +
Sbjct: 339 LISGALFLCVG-VVYDRMHTREISAYGGLVNNMPKYAVVFMIFTMANVGLPGTSGFVGE 396
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 31/271 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML I ++ GT +++++ +N + L
Sbjct: 165 ASFKFFLYTLAGSVLMLLAIMAMFWDAGTTDIRALLA----HNFPAEMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ I+ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFLRFSLPMFPLAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ + +L++ ++I ++ A+ Q + K++IAYSS+AHMG + I + IF
Sbjct: 273 ADFAPFIFVLSVVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAANQLGVQGAIF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL I GA + + + + + T E+ + GL P A++ MIF
Sbjct: 333 QMLSHGL---------ISGALFLCVGVVYDRMH-TREISAYGGLVNNMPKYAVVFMIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F+ W+ L
Sbjct: 383 ANVGLPGTSGFVGEFMTLIGVFQANT-WVAL 412
>gi|49475646|ref|YP_033687.1| NADH dehydrogenase subunit M [Bartonella henselae str. Houston-1]
gi|49238453|emb|CAF27681.1| NADH dehydrogenase I, M subunit [Bartonella henselae str.
Houston-1]
Length = 489
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/360 (53%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + IK +L YM AFL+L IIG FCALD
Sbjct: 76 GISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLLLEVAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 AILFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMVMYW-ETGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 195 DIPTLLNYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ L+ TLS+ +IIY SL+A+VQ DIKKLIAYSSIAHMG+
Sbjct: 255 LGGYGFLRFSLPMFPLASADFAPLVFTLSVSAIIYTSLVALVQNDIKKLIAYSSIAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++
Sbjct: 315 VTMGIFAANEQAIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGF+GEF+ ++ + N + + +T +I SAAY+L L + ++F
Sbjct: 375 VIFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVIFATTGVILSAAYALYLYRRVVF 434
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPLASADFAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+++A + L+ ++QNDIK++IAYS+++ +GY+T+G+ + A +I+ +++H
Sbjct: 282 LSVSAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQAIQGAIYQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 342 AALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVIFLIFTMANVGLPGSSGFLGE 396
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 146/351 (41%), Gaps = 47/351 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I ++Y TGTL++ ++ N + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMVMYWETGTLDIPTLLN----YQFPAHMQIWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKIL 749
+ K+ + P H W+PD + A +++L+ L L + + PL ++ ++
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGV-LLKLGGYGFLRFSLPMFPLASADFAPLV 279
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + I+ G+
Sbjct: 280 FTLSVSAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQAIQGAIYQMLSHGI 339
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
A+ GVI T E+ F GL P A+I +IF + G P
Sbjct: 340 VSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVIFLIFTMANVGLPG 389
Query: 870 TIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYIVEAIKAA 929
+ GF +F +F+ K+ +I A G I+ A+
Sbjct: 390 SSGFLGEFLTLIGVFQVNKL---------VVIFATTGVILSAA-----------YALYLY 429
Query: 930 RKSALIINRGSLELENLR--FEEKKYENFVFNINKASEKIITKILFNTYPS 978
R+ GSL+ ENL+ + E F+ +I I F YP+
Sbjct: 430 RRVVF----GSLDKENLKVLIDLSSREKFILY-----PMVILTIFFGIYPT 471
>gi|186472800|ref|YP_001860142.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia phymatum STM815]
gi|184195132|gb|ACC73096.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia phymatum STM815]
Length = 511
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/385 (46%), Positives = 277/385 (71%), Gaps = 10/385 (2%)
Query: 211 PFFSGFYSK------DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P +GF S +++ W+ F I Y LG+DG+SLWF LT+ TLII++ S + I
Sbjct: 50 PLVAGFDSSLATMQFEQQLAWLPEFGISYHLGVDGISLWFTVLTSVTTLIIVIASWESIS 109
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
++A+Y AFL+LSG + G F +LDGMLF++FFEATLIP++++IGTWG R YAA++FF
Sbjct: 110 TRVAQYYGAFLLLSGCMQGVFTSLDGMLFFVFFEATLIPLYLLIGTWGEQRRVYAAVRFF 169
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
++L+GSL ML S+IYL+ ++ +F+I +W L + Q+ +FI F AF++K+P+WP+
Sbjct: 170 FFSLVGSLAMLASLIYLWAHAH-TFDIATWRTLKLDFTPQLMVFIGFLAAFSVKVPMWPV 228
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPD H + PT +V+L MLK+G YGLLRF+LPI PDA ++F+ +I LSL+++IY
Sbjct: 229 HTWLPDVHSDGPTGAAVLLG--MLKMGGYGLLRFALPIVPDACHFFAPAMIALSLVAVIY 286
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
SL+A+ Q D++KL+AYS++AHMG VTLG+F ++ +GA++QM+S+ ++S AM + G
Sbjct: 287 GSLLALAQTDMRKLLAYSAVAHMGLVTLGLFTFDRMGTEGAVVQMLSYGIVSGAMLLCTG 346
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
L+++ + I +GG+ N +P + F ++FS+AN LPGTSGF+GEF++++ A++FNF
Sbjct: 347 MLFDRTRNGSIDAYGGVANSMPKLATFAMLFSMANVGLPGTSGFVGEFLVLMGAIRFNFW 406
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
+G + LI SAAY+L + K ++F
Sbjct: 407 VGATAALTLILSAAYTLWMYKRVMF 431
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 172/396 (43%), Gaps = 53/396 (13%)
Query: 508 QMKTRLISNFGGIINVIPHFS-VFFIIFSLANCSLPGTSGFIGEFMII--LSAVKFNFCI 564
+ +TR ++ G ++++P V SLA ++ EF I L +
Sbjct: 30 RSRTRWLALTGAAVSILPVIPLVAGFDSSLATMQFEQQLAWLPEFGISYHLGVDGISLWF 89
Query: 565 GVLTS-TALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELMSL 613
VLTS T LI A +S + G +++SG L ++ L+ L
Sbjct: 90 TVLTSVTTLIIVIASWESISTRVAQYYGAFLLLSGCMQGVFTSLDGMLFFVFFEATLIPL 149
Query: 614 TLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN 673
L + ++ ++ AA+++F ++ S ML + L+ T ++ + + +KL+
Sbjct: 150 YLLIGTWGEQRRVY---AAVRFFFFSLVGSLAMLASLIYLWAHAHTFDIAT-WRTLKLDF 205
Query: 674 INCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVI 729
++ + L S K+ + P H W+PDV+ GA++++ +L K+ +
Sbjct: 206 TPQLMVFIGFL---AAFSVKVPMWPVHTWLPDVHSDGPTGAAVLLGML-----KMGGYG- 256
Query: 730 IYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
L++ LP+V + + ++ L++ ++I G++ A+ Q + ++++AYS++AHMGL+
Sbjct: 257 ----LLRFALPIVPDACHFFAPAMIALSLVAVIYGSLLALAQTDMRKLLAYSAVAHMGLV 312
Query: 786 LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKT--DELDIF 843
+ + + G+ G ++L ++T +D +
Sbjct: 313 TLGLFTFDRMGTEGAVVQMLSYGIVS------------GAMLLCTGMLFDRTRNGSIDAY 360
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A M+F + G P T GF +F +
Sbjct: 361 GGVANSMPKLATFAMLFSMANVGLPGTSGFVGEFLV 396
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 22/209 (10%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
I W L T L F+ K +P+HTWLPD +GPT A+ L+ M
Sbjct: 195 IATWRTLKLDFTPQLMVFIGFLAAFSVKVPMWPVHTWLPDVHSDGPTGAAVLLGMLKMGG 254
Query: 82 AGIF-----MITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQ 136
G+ ++ F + ALS++ I + LL + Q D+++++AYS ++
Sbjct: 255 YGLLRFALPIVPDACHFFAPAMIALSLVAVI------YGSLLALAQTDMRKLLAYSAVAH 308
Query: 137 LGYMTVGL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLY 190
+G +T+GL G ++ ++++ + L G ++ + N I GG+
Sbjct: 309 MGLVTLGLFTFDRMGTEG---AVVQMLSYGIVSGAMLLCTG-MLFDRTRNGSIDAYGGVA 364
Query: 191 KYMPITCITSLIGLLSLVGAPFFSGFYSK 219
MP +++ ++ VG P SGF +
Sbjct: 365 NSMPKLATFAMLFSMANVGLPGTSGFVGE 393
>gi|395784238|ref|ZP_10464077.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella melophagi K-2C]
gi|395423993|gb|EJF90181.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella melophagi K-2C]
Length = 489
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 271/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + IK L YM AFL+L IIG FCALD
Sbjct: 76 GISYHMGVDGISILFVVLSAFLLPFCILASWENIKGGLKAYMIAFLLLEVAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
MLFY+FFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 TMLFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMAMYW-EAGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + + Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LK
Sbjct: 195 DIPTLLTYQFSTHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG LRFSLP+FP AS F+ L+ LSLI+IIY SL+A+VQ DIKKLIAYSSIAHMG+
Sbjct: 255 LGGYGFLRFSLPMFPIASADFAPLVFVLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + + IQGAI QM+SH ++S+A+F +G +Y+++ TR IS FGG+ N +P ++
Sbjct: 315 VTMGIFAINEQGIQGAIYQMLSHGIVSAALFFCVGVIYDRLHTREISAFGGLANNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F+IF++AN LPG+SGF+GEF+ ++ + N + V +T +I SAAY+L L + +IF
Sbjct: 375 VVFLIFTMANVGLPGSSGFLGEFLTLIGVFQINKLVAVFATTGVILSAAYALYLYRRMIF 434
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++F+
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFV 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAINEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LF G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFFCVG-VIYDRLHTREISAFGGLANNMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 40/272 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GTL++ ++ + + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMAMYWEAGTLDIPTLLT----YQFSTHMQMWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ +L++ ++I ++ A+ Q + K++IAYSSIAHMG + I +I I+
Sbjct: 273 ADFAPLVFVLSLIAIIYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAINEQGIQGAIY 332
Query: 803 NSCDSG-----LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
G LF+ + I+ L T E+ F GL P A++
Sbjct: 333 QMLSHGIVSAALFFCVGVIYDRL---------------HTREISAFGGLANNMPKYAVVF 377
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+IF + G P + GF +F +F+ K+
Sbjct: 378 LIFTMANVGLPGSSGFLGEFLTLIGVFQINKL 409
>gi|418055558|ref|ZP_12693612.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Hyphomicrobium denitrificans 1NES1]
gi|353209836|gb|EHB75238.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Hyphomicrobium denitrificans 1NES1]
Length = 495
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/357 (53%), Positives = 271/357 (75%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+S+ FI LT F+ + IL S + ++ ++ EYM AFL+L L++G F ALD +L
Sbjct: 73 YKLGVDGISMLFIILTTFLMPLCILASWVSVQNRVKEYMIAFLVLETLMLGVFSALDLVL 132
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFE LIP+FIIIG WGG R YA+ KFFLYTL+GS+LML++M+ +Y+ + + +I
Sbjct: 133 FYLFFEGGLIPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAMMAMYWHAGTT-DIP 191
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q Q WL+I FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G
Sbjct: 192 TLLQTKFPPEMQWWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGG 251
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP+AS + + +LS+++IIY SL+A+VQ D+KKLIAYSS+AHMG+VT+
Sbjct: 252 YGFLRFSLPMFPNASADLAPFVFSLSIVAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTM 311
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF ++ I GAI QM+SH L+SSA+F+ +G +Y++M TR I+ +GG++ +P ++ F
Sbjct: 312 GIFTGSQQGIDGAIFQMLSHGLVSSALFLCVGVIYDRMHTREIAAYGGLVERMPKYAAAF 371
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGFIGEF+ +++A K N + +L +T +I SAAY+L L + IIF
Sbjct: 372 MVFTMANVGLPGTSGFIGEFLTLMAAFKANTWVAILATTGIILSAAYALYLYRRIIF 428
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 101/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ L+ +F
Sbjct: 217 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPNASADLAPFVFS 275
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 276 LSIVAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFTGSQQGIDG---AIFQMLSHG 332
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G +I + H ++I GGL + MP ++ ++ VG P SGF
Sbjct: 333 LVSSALFLCVG-VIYDRMHTREIAAYGGLVERMPKYAAAFMVFTMANVGLPGTSGF 387
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 36/308 (11%)
Query: 597 SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILY 654
S +L+ YL E L+ + + + + K +++S K+F+ +L S ML + +Y
Sbjct: 126 SALDLVLFYLFFEGGLIPMFIIIGVWGGKRRVYAS---FKFFLYTLLGSVLMLLAMMAMY 182
Query: 655 GITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIII 714
GT ++ ++ + + + + K+ + P H W+PD + A
Sbjct: 183 WHAGTTDIPTLLQTKFPPEMQWWLW----IAFFASFAVKMPMWPVHTWLPDAHVEAPTAG 238
Query: 715 TLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVSAIT 766
+++L+ I+ ++ ++ LP+ N L L+I ++I ++ A+
Sbjct: 239 SVILAG--------ILLKMGGYGFLRFSLPMFPNASADLAPFVFSLSIVAIIYTSLVALV 290
Query: 767 QYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVI 826
Q + K++IAYSS+AHMG + I + + IF GL + + +F +G +
Sbjct: 291 QEDMKKLIAYSSVAHMGYVTMGIFTGSQQGIDGAIFQMLSHGL--VSSALFLCVG----V 344
Query: 827 ILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET 886
I + + T E+ + GL +R P A M+F + G P T GF +F F+
Sbjct: 345 IYDRMH----TREIAAYGGLVERMPKYAAAFMVFTMANVGLPGTSGFIGEFLTLMAAFKA 400
Query: 887 QKIWLLLL 894
W+ +L
Sbjct: 401 NT-WVAIL 407
>gi|114707381|ref|ZP_01440278.1| NADH dehydrogenase subunit M [Fulvimarina pelagi HTCC2506]
gi|114537262|gb|EAU40389.1| NADH dehydrogenase subunit M [Fulvimarina pelagi HTCC2506]
Length = 502
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/361 (53%), Positives = 265/361 (73%), Gaps = 4/361 (1%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ LT F+ + IL S + +K ++ EYM AFL+L L+IG FCALD
Sbjct: 76 GITYHMGVDGISMLFVILTTFLMPLCILASFESVKTRVKEYMIAFLVLETLVIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNKS 347
+LFYIFFE LIP+F+IIG WGG R YA+ KFFLYT +GS+LML++M+ +Y+ S
Sbjct: 136 LILFYIFFEGGLIPMFLIIGVWGGKRRIYASYKFFLYTFLGSVLMLVAMMAMYWNAGTTS 195
Query: 348 FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIML 407
L H + Q WL+ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+L
Sbjct: 196 IPELLAHDFPASM--QAWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILL 253
Query: 408 KLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMG 467
KLG YG LRFSLP+FP AS F+ + +LS+I+IIY SL+A++Q DIKKLIAYSS+AHMG
Sbjct: 254 KLGGYGFLRFSLPMFPIASADFAPFVYSLSVIAIIYTSLVALMQEDIKKLIAYSSVAHMG 313
Query: 468 FVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHF 527
FVT+GIF +QGAI QM+SH LIS A+F+ +G +Y++M TR I+ +GG++N +P +
Sbjct: 314 FVTMGIFAANAQGLQGAIFQMLSHGLISGALFLCVGVVYDRMHTREITAYGGLVNRMPKY 373
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
+V +IF++AN LPGTSGF+GEF+ +L + N + + +T +I SAAY+L L + +I
Sbjct: 374 AVAMLIFTMANVGLPGTSGFVGEFLTLLGVFQVNSWVAIFAATGVILSAAYALWLYRRVI 433
Query: 588 F 588
F
Sbjct: 434 F 434
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + ++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFLRFSLPMFPIASADFAPFVYS 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ +IF +++H
Sbjct: 282 LSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAANAQGLQGAIFQMLSHGLIS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRMHTREITAYGGLVNRMPKYAVAMLIFTMANVGLPGTSGFVGE 396
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 33/284 (11%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + K I++S K+F+ L S ML + +Y GT + +
Sbjct: 147 LIPMFLIIGVWGGKRRIYAS---YKFFLYTFLGSVLMLVAMMAMYWNAGTTSIPELLA-- 201
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
++ S+ A + K+ + P H W+PD + A +++L+ I
Sbjct: 202 --HDFPASMQAWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------I 251
Query: 730 IYRL----LIKCLLPLV----INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ +L ++ LP+ ++ + L++ ++I ++ A+ Q + K++IAYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPIASADFAPFVYSLSVIAIIYTSLVALMQEDIKKLIAYSSVAH 311
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELD 841
MG + I + IF GL I GA + + + + + T E+
Sbjct: 312 MGFVTMGIFAANAQGLQGAIFQMLSHGL---------ISGALFLCVGVVYDRMH-TREIT 361
Query: 842 IFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
+ GL R P A+ M+IF + G P T GF +F +F+
Sbjct: 362 AYGGLVNRMPKYAVAMLIFTMANVGLPGTSGFVGEFLTLLGVFQ 405
>gi|90417831|ref|ZP_01225743.1| NADH dehydrogenase I, M subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90337503|gb|EAS51154.1| NADH dehydrogenase I, M subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 502
Score = 391 bits (1005), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/383 (49%), Positives = 272/383 (71%), Gaps = 19/383 (4%)
Query: 224 IWIDYFN-----------------IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKK 265
IWID+ N I Y +G+DG+S+ F+ LT F+ IL S + ++ +
Sbjct: 53 IWIDFDNSNAGFQMVERLDWLGGGITYHMGVDGISMLFVILTTFLMPFCILASFESVQTR 112
Query: 266 LAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLY 325
+ EYM AFL+L L++G FCALD +LFYIFFE LIP+F+IIG WGG R YA+ KFFLY
Sbjct: 113 VKEYMIAFLVLETLVVGVFCALDIVLFYIFFEGGLIPMFLIIGVWGGKRRIYASYKFFLY 172
Query: 326 TLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHT 385
T +GS+LML++++ +++ + S +I Q WL+ FF +FA+K+P+WP+HT
Sbjct: 173 TFLGSVLMLVAIMTMFWTAGTS-SIPELLAYDFPASMQTWLWFAFFASFAVKMPMWPVHT 231
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAHVEAPT GSVILA I+LKLG YG LRFSLP+FP AS F+ L+ TLS+++IIY S
Sbjct: 232 WLPDAHVEAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASAEFAPLVFTLSVVAIIYTS 291
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFL 505
L+A++Q DIKKLIAYSS+AHMGFVT+GIF + ++GAI QM+SH L+S A+F+ +G +
Sbjct: 292 LVALMQQDIKKLIAYSSVAHMGFVTMGIFAANQQGVEGAIFQMLSHGLVSGALFLCVGVV 351
Query: 506 YNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
Y++M TR I+ +GG++N +PH++ +IF++AN LPGTSGF+GEF+ ++ + N +
Sbjct: 352 YDRMHTREIAAYGGLVNRMPHYAAAMLIFTMANVGLPGTSGFVGEFLTLIGVFQVNSWVA 411
Query: 566 VLTSTALIFSAAYSLCLSKNIIF 588
+ +T +I SAAY+L L + ++F
Sbjct: 412 IFAATGVILSAAYALWLYRRVVF 434
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASAEFAPLVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q DIK++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 282 LSVVAIIYTSLVALMQQDIKKLIAYSSVAHMGFVTMGIFAANQQGVEG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP LI ++ VG P SGF +
Sbjct: 339 LVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPHYAAAMLIFTMANVGLPGTSGFVGE 396
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 119/286 (41%), Gaps = 31/286 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + K I++S K+F+ L S ML I ++ GT + +
Sbjct: 147 LIPMFLIIGVWGGKRRIYAS---YKFFLYTFLGSVLMLVAIMTMFWTAGTSSIPELLA-- 201
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLSTTP 722
+ S+ + K+ + P H W+PD + A S+I I L L
Sbjct: 202 --YDFPASMQTWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKLGGYG 259
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
L + ++ L PLV L++ ++I ++ A+ Q + K++IAYSS+AHM
Sbjct: 260 FLRFSLPMFPLASAEFAPLVFT-------LSVVAIIYTSLVALMQQDIKKLIAYSSVAHM 312
Query: 783 GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI 842
G + I + IF GL + GA + + + + + T E+
Sbjct: 313 GFVTMGIFAANQQGVEGAIFQMLSHGL---------VSGALFLCVGVVYDRMH-TREIAA 362
Query: 843 FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ GL R P A M+IF + G P T GF +F +F+
Sbjct: 363 YGGLVNRMPHYAAAMLIFTMANVGLPGTSGFVGEFLTLIGVFQVNS 408
>gi|338739709|ref|YP_004676671.1| NADH-quinone oxidoreductase subunit M [Hyphomicrobium sp. MC1]
gi|337760272|emb|CCB66103.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
[Hyphomicrobium sp. MC1]
Length = 499
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/357 (51%), Positives = 271/357 (75%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +G+DG+S+ F+ LT F+ + IL S ++ ++ EYM AFLIL +++G FCALD +L
Sbjct: 73 YKMGVDGISMLFVILTTFLMPLCILASWQSVQVRVKEYMIAFLILETMMLGVFCALDLVL 132
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++M+ +Y+ + + +I
Sbjct: 133 FYLFFEGGLIPMFVIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAMMAMYWHAGTT-DIP 191
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q Q WL+I FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G
Sbjct: 192 TLLQTKFPPEMQWWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGG 251
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP+AS + + TLS+++I+Y SL+A+VQ D+KKLIAYSS+AHMG+VT+
Sbjct: 252 YGFLRFSLPMFPNASADLAPFVFTLSIVAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTM 311
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF T+ + GAI QM+SH ++SSA+F+ +G +Y++M TR I+ +GG++ +P ++ F
Sbjct: 312 GIFSATQQGVDGAIFQMLSHGIVSSALFLCVGVIYDRMHTREIAAYGGLVERMPKYAFAF 371
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGFIGEF+ +L+A + N + ++ +T +I SAAY+L L + +IF
Sbjct: 372 MVFTMANIGLPGTSGFIGEFLTLLAAFRANTWVAIIGATGMILSAAYALYLYRRVIF 428
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 101/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ L+ +F
Sbjct: 217 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPNASADLAPFVFT 275
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 276 LSIVAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFSATQQGVDG---AIFQMLSHG 332
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G +I + H ++I GGL + MP ++ ++ +G P SGF
Sbjct: 333 IVSSALFLCVG-VIYDRMHTREIAAYGGLVERMPKYAFAFMVFTMANIGLPGTSGF 387
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 38/283 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ ++ + + +
Sbjct: 159 ASFKFFLYTLLGSVLMLLAMMAMYWHAGTTDIPTLLQTKFPPEMQWWLW----IAFFASF 214
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQ 746
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+ N
Sbjct: 215 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFLRFSLPMFPNAS 266
Query: 747 KIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
L L+I +++ ++ A+ Q + K++IAYSS+AHMG + I S + IF
Sbjct: 267 ADLAPFVFTLSIVAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFSATQQGVDGAIF 326
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + + +F +G +I + + T E+ + GL +R P A M+F
Sbjct: 327 QMLSHGI--VSSALFLCVG----VIYDRMH----TREIAAYGGLVERMPKYAFAFMVFTM 376
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKG 905
+ G P T GF +F F W+ ++IGA G
Sbjct: 377 ANIGLPGTSGFIGEFLTLLAAFRANT-WV-------AIIGATG 411
>gi|451940710|ref|YP_007461348.1| NADH dehydrogenase subunit M [Bartonella australis Aust/NH1]
gi|451900097|gb|AGF74560.1| NADH dehydrogenase subunit M [Bartonella australis Aust/NH1]
Length = 489
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 280/382 (73%), Gaps = 7/382 (1%)
Query: 213 FSGFYSKDKKKIWIDYFN-----IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
++GF + + ++ FN + Y +GIDG+S+ FI L+AF+ IL S + +K L
Sbjct: 54 WAGFDNTNSDFQMVEKFNWLGSGVSYHMGIDGISVLFIVLSAFLLPFCILASWETVKDGL 113
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
YM AFL+L IIG FCAL+ +LFY+FFE +LIP+FIIIG WGG+ R YA++KFFLYT
Sbjct: 114 KAYMIAFLLLEVAIIGVFCALNAVLFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYT 173
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
L+GS+LML++++ +Y+ + +I + Q WL++ FF +FA+K+P+WP HTW
Sbjct: 174 LLGSVLMLVAIMAIYW-EAGTLDIPTLLTYKFPTDMQTWLWLAFFASFAVKMPMWPFHTW 232
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHVEAPT GSVILA I+LKLG YG LRFSLP+FP AS F++ + TLSLI+IIY SL
Sbjct: 233 LPDAHVEAPTAGSVILAGILLKLGGYGFLRFSLPMFPIASANFTSFVFTLSLIAIIYTSL 292
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+VQ DIKKLIAYSS+AHMG+VT+G+F + IQGAI QM+SH ++S+A+F+ +G +Y
Sbjct: 293 VALVQNDIKKLIAYSSVAHMGYVTMGVFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIY 352
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+++ TR IS FGG++N +P ++V F+IF++AN LPG+SGF+GEF+ ++ + N + +
Sbjct: 353 DRVHTREISAFGGLVNKMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVAI 412
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+T +I SAAY+L L + +IF
Sbjct: 413 FATTGVILSAAYALYLYRRVIF 434
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ + +F
Sbjct: 223 KMPMWPFHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFLRFSLPMFPIASANFTSFVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQNDIKKLIAYSSVAHMGYVTMGVFAANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRVHTREISAFGGLVNKMPKYAVVFLIFTMANVGLPGSSGFLGE 396
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GTL++ ++ ++ + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMAIYWEAGTLDIPTLLTYKFPTDMQTWLW----LAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + PFH W+PD + A +++L+ I+ +L ++ LP+
Sbjct: 221 AVKMPMWPFHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
N+ + L++ ++I ++ A+ Q + K++IAYSS+AHMG + + + I+
Sbjct: 273 ANFTSFVFTLSLIAIIYTSLVALVQNDIKKLIAYSSVAHMGYVTMGVFAANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL + P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRVHTREISAFGGLVNKMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P + GF +F +F+ K+
Sbjct: 383 ANVGLPGSSGFLGEFLTLIGVFQVNKL 409
>gi|384263114|ref|YP_005418302.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodospirillum photometricum DSM 122]
gi|378404216|emb|CCG09332.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodospirillum photometricum DSM 122]
Length = 496
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 274/369 (74%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ +W+ +NI Y +G+DG+S+ F+ L+ F+++I +L S + I+K + EYM AFL+L +
Sbjct: 68 ERDVWLPSYNIAYHMGVDGISVLFVLLSTFLSVICVLASWESIQKHIKEYMIAFLVLETM 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD +LFYIFFE LIP+F+IIG WGG R YAA KFFLYTL+GS+LML++M+
Sbjct: 128 MVGMFCALDFVLFYIFFEGVLIPMFLIIGIWGGVRRVYAAFKFFLYTLLGSVLMLLAMLT 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I S + Q WL++ F +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 MYFQAGTT-DIPSLMTHAFPAGLQTWLWLAMFASFAVKVPMWPVHTWLPDAHVEAPTAGS 246
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LK+G YG LRFS+P+ P AS F L+ LS++++IY SL+A+ Q D+KKLIA
Sbjct: 247 VILAGVLLKMGAYGFLRFSIPMLPLASADFQPLVYLLSIVAVIYTSLVALAQEDMKKLIA 306
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVT GIF +T +++GA+ QM+SH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 307 YSSIAHMGFVTAGIFAMTPQAVEGALFQMLSHGVVSGALFLCVGVVYDRLHTREINRYGG 366
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ + +P +++ F++F +A+ LPGTSGF+GEFMI+L + + + L ST L+ AAY
Sbjct: 367 LASTMPRYALVFMLFMMASVGLPGTSGFVGEFMIMLGVFRDSTLVAALISTGLVLGAAYM 426
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 427 LYLYRRVLF 435
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ L++ ++++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGAYGFLRFSIPMLPLASADFQPLVYL 282
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+I A + L+ + Q D+K++IAYS+++ +G++T G + A ++F +++H
Sbjct: 283 LSIVAVIYTSLVALAQEDMKKLIAYSSIAHMGFVTAGIFAMTPQAVEGALFQMLSHGVVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ +++ VG P SGF +
Sbjct: 343 GALFLCVG-VVYDRLHTREINRYGGLASTMPRYALVFMLFMMASVGLPGTSGFVGE 397
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 125/261 (47%), Gaps = 18/261 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + +Y GT ++ S+ + + L +
Sbjct: 166 AAFKFFLYTLLGSVLMLLAMLTMYFQAGTTDIPSLMT----HAFPAGLQTWLWLAMFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLV-INWQKI 748
+ K+ + P H W+PD + A +++L+ K+ + + R I +LPL ++Q +
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFL-RFSIP-MLPLASADFQPL 279
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ +L+I ++I ++ A+ Q + K++IAYSSIAHMG + I ++ +F G
Sbjct: 280 VYLLSIVAVIYTSLVALAQEDMKKLIAYSSIAHMGFVTAGIFAMTPQAVEGALFQMLSHG 339
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
+ + GA + + + + + T E++ + GL P AL+ M+FM + G P
Sbjct: 340 V---------VSGALFLCVGVVYDRLH-TREINRYGGLASTMPRYALVFMLFMMASVGLP 389
Query: 869 PTIGFYAKFFIFEKIFETQKI 889
T GF +F I +F +
Sbjct: 390 GTSGFVGEFMIMLGVFRDSTL 410
>gi|121602023|ref|YP_989082.1| NADH dehydrogenase subunit M [Bartonella bacilliformis KC583]
gi|421760888|ref|ZP_16197699.1| NADH:ubiquinone oxidoreductase subunit M [Bartonella bacilliformis
INS]
gi|120614200|gb|ABM44801.1| NADH dehydrogenase (quinone), M subunit [Bartonella bacilliformis
KC583]
gi|411174119|gb|EKS44155.1| NADH:ubiquinone oxidoreductase subunit M [Bartonella bacilliformis
INS]
Length = 489
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/361 (52%), Positives = 274/361 (75%), Gaps = 4/361 (1%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +GIDG+S+ F+ L+AF+ +L S + +K +L YM AFL+L IIG FC+LD
Sbjct: 76 GISYHMGIDGISILFVVLSAFLLPFCVLASWETVKDRLKAYMIAFLLLEVAIIGVFCSLD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK-S 347
+LFYIFFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 136 AVLFYIFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMAMYWEAGTLD 195
Query: 348 FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIML 407
L +Q I+ Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++L
Sbjct: 196 IPTLLNYQFPISM--QMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLL 253
Query: 408 KLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMG 467
KLG YG LRFSLP+FP AS FS ++ LSLI+IIY SL+A+VQ D+KKLIAYSS+AHMG
Sbjct: 254 KLGGYGFLRFSLPMFPVASVDFSPFVLVLSLIAIIYTSLVALVQNDMKKLIAYSSVAHMG 313
Query: 468 FVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHF 527
+VT+GIF + +QGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P +
Sbjct: 314 YVTMGIFAANEQGVQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKY 373
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
+V F+I ++AN LPGTSGF+GEF+ ++ + N + + T+T +I SAAY+L L + +I
Sbjct: 374 AVVFLILTMANVGLPGTSGFLGEFLTLIGVFQINKLVAIFTTTGVILSAAYALYLYRRVI 433
Query: 588 F 588
+
Sbjct: 434 W 434
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ S +L
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPVASVDFSPFVLV 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++QND+K++IAYS+++ +GY+T+G+ GV +I+ +++H
Sbjct: 282 LSLIAIIYTSLVALVQNDMKKLIAYSSVAHMGYVTMGIFAANEQGVQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ VG P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLILTMANVGLPGTSGFLGE 396
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 120/272 (44%), Gaps = 40/272 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I +Y GTL++ ++ N S+ L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMAMYWEAGTLDIPTLLN----YQFPISMQMWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPVAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+++ +L+L++ ++I ++ A+ Q + K++IAYSS+AHMG + I + I+
Sbjct: 273 VDFSPFVLVLSLIAIIYTSLVALVQNDMKKLIAYSSVAHMGYVTMGIFAANEQGVQGAIY 332
Query: 803 NSCDSG-----LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
G LF + I+ L T E+ F GL P A++
Sbjct: 333 QMLSHGIVSAALFLCVGVIYDRL---------------HTREISAFGGLVNNMPKYAVVF 377
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+I + G P T GF +F +F+ K+
Sbjct: 378 LILTMANVGLPGTSGFLGEFLTLIGVFQINKL 409
>gi|413961185|ref|ZP_11400414.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. SJ98]
gi|413931899|gb|EKS71185.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. SJ98]
Length = 495
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/369 (48%), Positives = 271/369 (73%), Gaps = 4/369 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
++ W+ F I Y LG+DG+SLWF LTA TLII + S + K++A+Y AFL+LSG
Sbjct: 49 ERVEWLPQFGISYHLGVDGISLWFTVLTAVTTLIIFVASWRSVTKQVAQYYGAFLVLSGC 108
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+ G F +LDGMLF++FFEA+LIP++++IGTWGG R YAAI+FF ++L+GSL ML +++Y
Sbjct: 109 MQGVFASLDGMLFFVFFEASLIPLYLLIGTWGGERRVYAAIRFFFFSLLGSLAMLAALVY 168
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
L+ ++ +F+I +W L + QI +F+ F AF++K+P+WP+HTWLPD + E PT +
Sbjct: 169 LWTQAH-TFDIDAWRNLKLGFTPQIVVFVCFLAAFSVKVPMWPVHTWLPDVNSEGPTGAA 227
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+L MLK+G YG+LR+ LPI PDAS++F+ +I LSL+++IY SL+A+ Q D++KL+A
Sbjct: 228 VLLG--MLKIGGYGMLRYVLPIVPDASHFFAPAMIALSLVAVIYGSLVALAQTDMRKLLA 285
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YS++AHMG VTLG+F ++ +GA++QM+S+ ++S AM + G L + K I +GG
Sbjct: 286 YSAVAHMGLVTLGLFTFDRLGTEGAVVQMLSYGIVSGAMLLCTGVLVERTKNGSIDAYGG 345
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ N +P F+V ++F++AN LPGTSGF+GEF++++ A++ NF IG +T+LI SAAY+
Sbjct: 346 VANTMPRFAVCAMLFAMANVGLPGTSGFVGEFLVLMGAIRLNFWIGAAAATSLILSAAYT 405
Query: 580 LCLSKNIIF 588
L + K +IF
Sbjct: 406 LWMVKRVIF 414
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 22/206 (10%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGI 84
W + L T + F+ K +P+HTWLPD + EGPT A+ L+ + G+
Sbjct: 181 WRNLKLGFTPQIVVFVCFLAAFSVKVPMWPVHTWLPDVNSEGPTGAAVLLGMLKIGGYGM 240
Query: 85 F-----MITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGY 139
++ S F + ALS++ I + L+ + Q D+++++AYS ++ +G
Sbjct: 241 LRYVLPIVPDASHFFAPAMIALSLVAVI------YGSLVALAQTDMRKLLAYSAVAHMGL 294
Query: 140 MTVG------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYM 193
+T+G LG ++ ++++ + L G +++ N I GG+ M
Sbjct: 295 VTLGLFTFDRLGTEG---AVVQMLSYGIVSGAMLLCTG-VLVERTKNGSIDAYGGVANTM 350
Query: 194 PITCITSLIGLLSLVGAPFFSGFYSK 219
P + +++ ++ VG P SGF +
Sbjct: 351 PRFAVCAMLFAMANVGLPGTSGFVGE 376
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 152/336 (45%), Gaps = 46/336 (13%)
Query: 562 FCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISG----------NNLLSIYLGLELM 611
F + +T +IF A++ ++K + G +++SG L ++ L+
Sbjct: 72 FTVLTAVTTLIIFVASWR-SVTKQVAQYYGAFLVLSGCMQGVFASLDGMLFFVFFEASLI 130
Query: 612 SLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL 671
L L + + ++ AAI++F +L S ML + L+ T ++ + N +KL
Sbjct: 131 PLYLLIGTWGGERRVY---AAIRFFFFSLLGSLAMLAALVYLWTQAHTFDIDAWRN-LKL 186
Query: 672 NNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLF 727
V+ + + S K+ + P H W+PDV GA++++ +L K+ +
Sbjct: 187 GFTPQIVV---FVCFLAAFSVKVPMWPVHTWLPDVNSEGPTGAAVLLGML-----KIGGY 238
Query: 728 VIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG 783
+++ +LP+V + + ++ L++ ++I G++ A+ Q + ++++AYS++AHMG
Sbjct: 239 G-----MLRYVLPIVPDASHFFAPAMIALSLVAVIYGSLVALAQTDMRKLLAYSAVAHMG 293
Query: 784 LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
L+ + + + G+ A+L GV++ K +D +
Sbjct: 294 LVTLGLFTFDRLGTEGAVVQMLSYGIVS-----GAMLLCTGVLV-----ERTKNGSIDAY 343
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
G+ P A+ M+F + G P T GF +F +
Sbjct: 344 GGVANTMPRFAVCAMLFAMANVGLPGTSGFVGEFLV 379
>gi|90423917|ref|YP_532287.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris BisB18]
gi|90105931|gb|ABD87968.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodopseudomonas palustris BisB18]
Length = 506
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/369 (51%), Positives = 271/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + II I +++ EYM AFL+L L
Sbjct: 72 EKAPWLAA-GIGYHMGVDGISLPFVILTTALMPFCIIASWKSITRRVGEYMMAFLVLETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 131 MIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++ + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LY-LNAGTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFSLP+FPDAS+ F+ LI LS+I+I+Y SL+A++Q DIKKLIA
Sbjct: 250 VVLAAIMLKMGGYGFLRFSLPMFPDASHDFAPLIFALSVIAIVYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QM+SH ++S A+F+ +G +Y++M TR IS +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGTTQGVAGGVFQMVSHGIVSGALFLCVGIVYDRMHTREISAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F++F++AN LPGTSGF+GEF+ +L K N + + +I SAAY+
Sbjct: 370 LVNRMPIYAVVFMVFTMANVGLPGTSGFVGEFLTLLGTFKVNIPTATVATLGVILSAAYA 429
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 430 LWLYRKVVF 438
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLPD+ +E PT A +++ AA M+ G + R S P+F + S+ +I
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGGYGFLRFSLPMFPDASHDFAPLIFA 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 286 LSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAG---GVFQMVSHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I+ + H ++I GGL MPI + ++ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-IVYDRMHTREISAYGGLVNRMPIYAVVFMVFTMANVGLPGTSGFVGE 400
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 119/263 (45%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 169 ASFKFFLYTLLGSVLMLLAIMALYLNAGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 224
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+ +
Sbjct: 225 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAIMLKMGGYGFLRFSLPMFPDAS 276
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ ++ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I + T +F
Sbjct: 277 HDFAPLIFALSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAGGVF 336
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P A++ M+F
Sbjct: 337 QMVSHGI---------VSGALFLCVGIVYDRMH-TREISAYGGLVNRMPIYAVVFMVFTM 386
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 387 ANVGLPGTSGFVGEFLTLLGTFK 409
>gi|395786225|ref|ZP_10465952.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella tamiae Th239]
gi|423716882|ref|ZP_17691072.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella tamiae Th307]
gi|395422523|gb|EJF88719.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella tamiae Th239]
gi|395428956|gb|EJF95031.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bartonella tamiae Th307]
Length = 489
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/360 (52%), Positives = 271/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ +L S + +K +L YM AFL+L IIG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCVLASWETVKDRLKAYMIAFLLLEVAIIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY++FE +LIP+FIIIG WGG R YA+IKFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 ALLFYVYFEGSLIPMFIIIGVWGGPRRVYASIKFFLYTLLGSVLMLIALMAMYW-NAGTL 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 DIPTLLHHEFPANMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS + I TLS+I+IIY SL+A+VQ D+KKLIAYSS+AHMG+
Sbjct: 255 LGGYGFIRFSLPMFPLASADLAPFIFTLSVIAIIYTSLVALVQEDMKKLIAYSSVAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF ++ +QGAI QM+SH ++S+A+F+ +G +Y+++ TR I+ FGG+ + +P ++
Sbjct: 315 VTMGIFSANELGLQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREIAAFGGLAHNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F++F++AN LPGTSGFIGEF+ ++ + N + V +T +I SAAY+L L + ++F
Sbjct: 375 VAFLVFTMANVGLPGTSGFIGEFLTLIGVFQVNTWVAVFATTGVILSAAYALYLYRRVVF 434
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ L+ +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADLAPFIFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHA 160
+ I + L+ ++Q D+K++IAYS+++ +GY+T+G LG+ +I+ +++H
Sbjct: 282 LSVIAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFSANELGLQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G +I + H ++I GGL MP + L+ ++ VG P SGF
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREIAAFGGLAHNMPKYAVAFLVFTMANVGLPGTSGF 393
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 40/270 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+IK+F+ +L S ML + +Y GTL++ ++ + + ++ L
Sbjct: 165 ASIKFFLYTLLGSVLMLIALMAMYWNAGTLDIPTLLH----HEFPANMQIWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPLAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS-----IKTSHN 797
+ + L++ ++I ++ A+ Q + K++IAYSS+AHMG + I S ++ +
Sbjct: 273 ADLAPFIFTLSVIAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFSANELGLQGAIY 332
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
++ + LF + I+ L T E+ F GL P A+
Sbjct: 333 QMLSHGIVSAALFLCVGVIYDRL---------------HTREIAAFGGLAHNMPKYAVAF 377
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
++F + G P T GF +F +F+
Sbjct: 378 LVFTMANVGLPGTSGFIGEFLTLIGVFQVN 407
>gi|49474189|ref|YP_032231.1| NADH dehydrogenase subunit M [Bartonella quintana str. Toulouse]
gi|49239693|emb|CAF26068.1| NADH dehydrogenase I, M subunit [Bartonella quintana str. Toulouse]
Length = 489
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/357 (53%), Positives = 270/357 (75%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +GIDG+S+ F+ L+AF+ IL S + IK L YM AFL+L IIG FCALD +L
Sbjct: 79 YHMGIDGISILFVVLSAFLLPFCILASWENIKDSLKAYMIAFLLLEVAIIGVFCALDAIL 138
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y + + +I
Sbjct: 139 FYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMVMY-LEAGTLDIP 197
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LKLG
Sbjct: 198 TLLTYQFPAHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKLGG 257
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP AS F+ L+ LSLI+I+Y SL+A+VQ DIKKLIAYSSIAHMG+VT+
Sbjct: 258 YGFLRFSLPMFPIASTAFAPLVFVLSLIAILYTSLVALVQNDIKKLIAYSSIAHMGYVTM 317
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF + IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++V F
Sbjct: 318 GIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYAVVF 377
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+IF++AN LPG+SGF+GEF+ ++ + N + + +T +I SAAY+L L + ++F
Sbjct: 378 LIFTMANIGLPGSSGFLGEFLTLIGVFQVNKLVVIFATTGVILSAAYALYLYRRVVF 434
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 107/179 (59%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++TA + ++F+
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASTAFAPLVFV 281
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAILYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ +G P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANIGLPGSSGFLGE 396
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 28/266 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I ++Y GTL++ ++ + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMVMYLEAGTLDIPTLLT----YQFPAHMQMWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ + PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASTAFAPLV- 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
+L++ +++ ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 280 ------FVLSLIAILYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQ 333
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+ A+ GVI T E+ F GL P A++ +IF +
Sbjct: 334 MLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKI 889
G P + GF +F +F+ K+
Sbjct: 384 NIGLPGSSGFLGEFLTLIGVFQVNKL 409
>gi|339717977|ref|YP_002909289.2| Proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia glumae BGR1]
gi|339305153|gb|ACR32054.2| Proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia glumae BGR1]
Length = 517
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/401 (47%), Positives = 293/401 (73%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ + +++GLL V P +GF + + + K W+ F + +G+DGLSLW + L+
Sbjct: 36 LALVGAIVGLLLTV--PLVAGFDAHNTAVQFTEYKPWLSAFGSAWRMGVDGLSLWLVVLS 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TL+I++ S + + ++A+Y +FLILSGL+IG F +LDGMLF+IFFEATLIP+F++I
Sbjct: 94 AFTTLVIVIASWESVTTRVAQYHGSFLILSGLMIGVFTSLDGMLFFIFFEATLIPLFVLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG +NRSYAAIKFF + GSLLML +M+YL+ +++ +F++ W Q + Q+ +F
Sbjct: 154 GTWGHANRSYAAIKFFFISFAGSLLMLAAMLYLFGLTH-TFDMAVWQQARLGFAPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +V L M+K+G YG LRF+LPI PDA++
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLQDVYTDGPTGAAVSLG--MIKIGGYGFLRFALPIAPDAAH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
Y + ++I LSL++++Y SL+A+ Q D+ K++AYSS+AHMG VTLG+F+ ++SI GAI+Q
Sbjct: 271 YLAPVMIGLSLVAVVYASLLALAQKDMAKMLAYSSVAHMGLVTLGVFLFDQMSITGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MIS+ ++ AMF+ +G LY++ +TR I+ + G+ N +P ++F ++FS+AN LPGTSGF
Sbjct: 331 MISYGFVAGAMFLCVGALYDRTRTRAIAEYSGVANTMPRLALFAVLFSMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEF++I+ AV+ NF IG + + LI SAAY+L + K +IF
Sbjct: 391 VGEFLVIMGAVRVNFWIGAIAALTLILSAAYTLWMLKRVIF 431
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 36/261 (13%)
Query: 629 SEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIV 688
S AAIK+F + S ML + L+G+T T ++ V + + + L L
Sbjct: 162 SYAAIKFFFISFAGSLLMLAAMLYLFGLTHTFDMA----VWQQARLGFAPQLLVFLGFFA 217
Query: 689 GLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+ DVY GA++ L + I ++ LP+ +
Sbjct: 218 AFAVKVPMWPVHTWLQDVYTDGPTGAAV----------SLGMIKIGGYGFLRFALPIAPD 267
Query: 745 ----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+++ L++ +++ ++ A+ Q + +M+AYSS+AHMGL+ +
Sbjct: 268 AAHYLAPVMIGLSLVAVVYASLLALAQKDMAKMLAYSSVAHMGLVTLGV----------F 317
Query: 801 IFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+F+ S + +I+Y F F + L + T +T + + G+ P AL +
Sbjct: 318 LFDQMSITGAIVQMISYGFVAGAMFLCVGALYDRT--RTRAIAEYSGVANTMPRLALFAV 375
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+F + G P T GF +F +
Sbjct: 376 LFSMANVGLPGTSGFVGEFLV 396
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 10/200 (5%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L L FL K +P+HTWL D +GPT A+ + M+ G
Sbjct: 198 WQQARLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLQDVYTDGPTGAAVSLG---MIKIGG 254
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R + P+ + L+ +++ + + + LL + Q D+ +++AYS+++ +G +T+
Sbjct: 255 YGFLRFALPIAPDAAHYLAPVMIGLSLVAVVYASLLALAQKDMAKMLAYSSVAHMGLVTL 314
Query: 143 GL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ + T +I ++++ F +FL G+ + + + I G+ MP +
Sbjct: 315 GVFLFDQMSITGAIVQMISYGFVAGAMFLCVGA-LYDRTRTRAIAEYSGVANTMPRLALF 373
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
+++ ++ VG P SGF +
Sbjct: 374 AVLFSMANVGLPGTSGFVGE 393
>gi|23013095|ref|ZP_00053040.1| COG1008: NADH:ubiquinone oxidoreductase subunit 4 (chain M)
[Magnetospirillum magnetotacticum MS-1]
Length = 420
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/346 (51%), Positives = 267/346 (77%), Gaps = 2/346 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
+ + +W + Y +G+DG+S+WF+ L+ F+T I IL + ++K++ EYM AF+I
Sbjct: 64 FQLKETALWFPGTTVTYSMGVDGISMWFVLLSTFLTPICILAAYGSVEKRVKEYMVAFMI 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L ++IG FCALD +LFYIFFEA LIP+FIIIG WGG R YAA KFFLYTL+GS+LMLI
Sbjct: 124 LETMMIGMFCALDLVLFYIFFEAVLIPMFIIIGVWGGQRRVYAAFKFFLYTLLGSVLMLI 183
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+M+ +Y+ ++ + +I S S Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 184 AMLVMYFDAHTT-DIPSLMAHSFPFKMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAP 242
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG +RFS+P+ PDAS YF+ LI TLS++++IY SL+A+VQ D+K
Sbjct: 243 TGGSVILAGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYTLSIVAVIYTSLVALVQDDMK 302
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VT+GIF +T ++GA+ QM+SH +++SA+F+ +G +Y++M TR I+
Sbjct: 303 KLIAYSSVAHMGYVTIGIFSMTTQGVEGAVFQMLSHGIVASALFLCVGVIYDRMHTREIA 362
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFN 561
+GG+ + +P ++V F++F++A+ LPGT+GF+GEF++++ + +
Sbjct: 363 RYGGLASRMPIYAVVFMVFTMASVGLPGTAGFVGEFLVLMGVFQVH 408
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT S ++ A ++ G + R S P+ ++ + +++
Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSVIL-AGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYT 282
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q+D+K++IAYS+++ +GY+T+G+ GV ++F +++H
Sbjct: 283 LSIVAVIYTSLVALVQDDMKKLIAYSSVAHMGYVTIGIFSMTTQGVEG---AVFQMLSHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ LFL G +I + H ++I GGL MPI + ++ ++ VG P +GF +
Sbjct: 340 IVASALFLCVG-VIYDRMHTREIARYGGLASRMPIYAVVFMVFTMASVGLPGTAGFVGE 397
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 123/262 (46%), Gaps = 22/262 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + ++Y T ++ S+ ++ + L
Sbjct: 166 AAFKFFLYTLLGSVLMLIAMLVMYFDAHTTDIPSLMA----HSFPFKMQLWLWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ K+ + P H W+PD + G S+I+ +L K+ + I R I L + +
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTGGSVILAGVLL---KMGAYGFI-RFSIPMLPDASVYFT 277
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ L+I ++I ++ A+ Q + K++IAYSS+AHMG + I S+ T +F
Sbjct: 278 PLIYTLSIVAVIYTSLVALVQDDMKKLIAYSSVAHMGYVTIGIFSMTTQGVEGAVFQMLS 337
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
G+ + + +F +G +I + + T E+ + GL R P A++ M+F + G
Sbjct: 338 HGI--VASALFLCVG----VIYDRMH----TREIARYGGLASRMPIYAVVFMVFTMASVG 387
Query: 867 FPPTIGFYAKFFIFEKIFETQK 888
P T GF +F + +F+
Sbjct: 388 LPGTAGFVGEFLVLMGVFQVHT 409
>gi|296444806|ref|ZP_06886769.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylosinus trichosporium OB3b]
gi|296257754|gb|EFH04818.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylosinus trichosporium OB3b]
Length = 503
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/369 (51%), Positives = 270/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+++ W + Y +G+DG S+ F+ LT F+T IL S + +K ++ EY+ AFL+L L
Sbjct: 68 EQRAWFGS-GLTYKMGVDGFSIPFVLLTTFLTPFAILASWESVKFRVKEYLVAFLVLETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL GSLLMLI+++
Sbjct: 127 MIGVFCALDLVLFYLFFEGGLIPMFLIIGVWGGKRRVYASFKFFLYTLAGSLLMLIAILA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 IYGKTGTT-DIAVLLETQFPPEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG +RFSLP+FPDAS F+ L+ LS+I++IY SL+A+VQ DIKKLIA
Sbjct: 246 VILAAILLKMGGYGFIRFSLPMFPDASAQFAPLVFALSVIAVIYTSLVALVQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSIAHMGFVT+G+F +T +QGA+ MISH +S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSIAHMGFVTMGLFTMTTQGLQGAMFLMISHGFVSGALFLCVGVIYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F+LAN LPGTSGF+GEF+ + A N + + ++ ++ SAAY+
Sbjct: 366 LVNRMPLYAFTFMVFTLANVGLPGTSGFVGEFLTLTGAFVANSWVALFATSGVVLSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LYLYRRVIF 434
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFIRFSLPMFPDASAQFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q DIK++IAYS+++ +G++T+GL ++F +++H F
Sbjct: 282 LSVIAVIYTSLVALVQEDIKKLIAYSSIAHMGFVTMGLFTMTTQGLQGAMFLMISHGFVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP+ T ++ L+ VG P SGF +
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAYGGLVNRMPLYAFTFMVFTLANVGLPGTSGFVGE 396
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 133/295 (45%), Gaps = 35/295 (11%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + + K +++S K+F+ + S ML I +YG T
Sbjct: 135 DLVLFYLFFEGGLIPMFLIIGVWGGKRRVYAS---FKFFLYTLAGSLLMLIAILAIYGKT 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT ++ + + L + K+ + P H W+PD + A +++
Sbjct: 192 GTTDIAVLLE----TQFPPEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ ++ I+ LP+ + + ++ L++ ++I ++ A+ Q +
Sbjct: 248 LAA--------ILLKMGGYGFIRFSLPMFPDASAQFAPLVFALSVIAVIYTSLVALVQED 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSSIAHMG + + ++ T +F +I++ F + GA + + +
Sbjct: 300 IKKLIAYSSIAHMGFVTMGLFTMTT--------QGLQGAMFLMISHGF-VSGALFLCVGV 350
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
+ + T E+ + GL R P A M+F + G P T GF +F F
Sbjct: 351 IYDRMH-TREIAAYGGLVNRMPLYAFTFMVFTLANVGLPGTSGFVGEFLTLTGAF 404
>gi|403530468|ref|YP_006664997.1| NADH dehydrogenase subunit M [Bartonella quintana RM-11]
gi|403232540|gb|AFR26283.1| NADH dehydrogenase subunit M [Bartonella quintana RM-11]
Length = 489
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/357 (53%), Positives = 270/357 (75%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +GIDG+S+ F+ L+AF+ IL S + IK +L YM AFL+L IIG FCALD +L
Sbjct: 79 YHMGIDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLLLEVAIIGVFCALDAIL 138
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFE +LIP+FIIIG WGG+ R YA++KFFLYTL+GS+LML++++ +Y + + +I
Sbjct: 139 FYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLVAIMVMY-LEAGTLDIP 197
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA ++LKLG
Sbjct: 198 TLLTYQFPAHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGVLLKLGG 257
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP AS F+ L+ LSLI+I+Y SL+A+VQ DIKKLIAYSSIAHMG+VT+
Sbjct: 258 YGFLRFSLPMFPIASTDFAPLVFVLSLIAILYTSLVALVQNDIKKLIAYSSIAHMGYVTM 317
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF + IQGAI QM+SH ++S+A+F+ +G +Y+++ TR IS FGG++N +P ++V F
Sbjct: 318 GIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMPKYAVVF 377
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+IF++AN LPG+SGF+GEF+ ++ + N + + +T +I SA Y+L L + ++F
Sbjct: 378 LIFTMANIGLPGSSGFLGEFLTLIGVFQVNKLVVIFATTGVILSAVYALYLYRRVVF 434
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++T + ++F+
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPIASTDFAPLVFV 281
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++QNDIK++IAYS+++ +GY+T+G+ G+ +I+ +++H
Sbjct: 282 LSLIAILYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQG---AIYQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + LI ++ +G P SGF +
Sbjct: 339 IVSAALFLCVG-VIYDRLHTREISAFGGLVNNMPKYAVVFLIFTMANIGLPGSSGFLGE 396
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 119/267 (44%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A++K+F+ +L S ML I ++Y GTL++ ++ + L
Sbjct: 165 ASMKFFLYTLLGSVLMLVAIMVMYLEAGTLDIPTLLT----YQFPAHMQMWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ ++ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPIAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ +L++ +++ ++ A+ Q + K++IAYSSIAHMG + I + I+
Sbjct: 273 TDFAPLVFVLSLIAILYTSLVALVQNDIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIY 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ A+ GVI T E+ F GL P A++ +IF
Sbjct: 333 QMLSHGIVSA-----ALFLCVGVI-----YDRLHTREISAFGGLVNNMPKYAVVFLIFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P + GF +F +F+ K+
Sbjct: 383 ANIGLPGSSGFLGEFLTLIGVFQVNKL 409
>gi|254469370|ref|ZP_05082775.1| NADH-quinone oxidoreductase chain m [Pseudovibrio sp. JE062]
gi|374331769|ref|YP_005081953.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Pseudovibrio sp. FO-BEG1]
gi|211961205|gb|EEA96400.1| NADH-quinone oxidoreductase chain m [Pseudovibrio sp. JE062]
gi|359344557|gb|AEV37931.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Pseudovibrio sp. FO-BEG1]
Length = 508
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/375 (50%), Positives = 272/375 (72%), Gaps = 3/375 (0%)
Query: 215 GFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAF 273
GF +K + D F Y +G+DG+S+ F+ LT F+ + IL S + ++ ++ EYM AF
Sbjct: 63 GFQMVEKYDWFGDTFT--YHMGVDGISMLFVILTTFLMPLCILASWESVQDRVKEYMIAF 120
Query: 274 LILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLM 333
L+L L+IG FCALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LM
Sbjct: 121 LVLETLMIGVFCALDLVLFYVFFEAGLIPMFLIIGVWGGPRRVYASYKFFLYTLLGSVLM 180
Query: 334 LISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
L +++ +Y+ + + + Q WL++ FF +FA+K+P+WP+HTWLPDAHVE
Sbjct: 181 LAAIMAMYWQAGTLDIVELLDKSDFPAQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVE 240
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSV+LAAI+LK+G YG LRFSLP+FP AS F+ LI TLS+++IIY SL+A+ Q D
Sbjct: 241 APTAGSVVLAAILLKMGGYGFLRFSLPMFPIASDMFAPLIFTLSIVAIIYTSLVALAQED 300
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IKKLIAYSS+AHMGFVT+GIF I+GAI M++H LIS A+F+ +G +Y++M TR
Sbjct: 301 IKKLIAYSSVAHMGFVTMGIFSANAQGIEGAIFMMLAHGLISGALFLCVGVIYDRMHTRQ 360
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG++N +P ++V F+IF++AN LPGT+GF+GEF+ ++ + N + +T +I
Sbjct: 361 ITAYGGLVNNMPRYAVAFMIFTMANVGLPGTAGFVGEFLTMIGVFQVNTWVAFFAATGVI 420
Query: 574 FSAAYSLCLSKNIIF 588
SAAY+L L + ++F
Sbjct: 421 LSAAYALFLYRRVVF 435
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F +++ + ++F
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPIASDMFAPLIFT 282
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+I A + L+ + Q DIK++IAYS+++ +G++T+G+ +IF ++ H
Sbjct: 283 LSIVAIIYTSLVALAQEDIKKLIAYSSVAHMGFVTMGIFSANAQGIEGAIFMMLAHGLIS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H + I GGL MP + +I ++ VG P +GF +
Sbjct: 343 GALFLCVG-VIYDRMHTRQITAYGGLVNNMPRYAVAFMIFTMANVGLPGTAGFVGE 397
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 27/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I +Y GTL+ I ++ ++ + L
Sbjct: 165 ASYKFFLYTLLGSVLMLAAIMAMYWQAGTLD---IVELLDKSDFPAQMQTWLWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ ++ +LL L + ++ + PL+
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIASDMFAPLIF 281
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L+I ++I ++ A+ Q + K++IAYSS+AHMG + I S IF
Sbjct: 282 T-------LSIVAIIYTSLVALAQEDIKKLIAYSSVAHMGFVTMGIFSANAQGIEGAIFM 334
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL I GA + + + + + T ++ + GL P A+ MIF +
Sbjct: 335 MLAHGL---------ISGALFLCVGVIYDRMH-TRQITAYGGLVNNMPRYAVAFMIFTMA 384
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F +F+
Sbjct: 385 NVGLPGTAGFVGEFLTMIGVFQ 406
>gi|187919711|ref|YP_001888742.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia phytofirmans PsJN]
gi|187718149|gb|ACD19372.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia phytofirmans PsJN]
Length = 518
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/365 (51%), Positives = 276/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +G+DG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 69 WSPSFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFLMLSGFMQGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGMLF+I FEATLIP++++IGTWG SNRSYAA+KFF + +GSLLML+SM+YLY
Sbjct: 129 FTSLDGMLFFISFEATLIPLYLLIGTWGQSNRSYAAVKFFFVSFLGSLLMLMSMLYLY-S 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + Q+ +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 188 QTHSFDLALWRETHLGTWPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLKLG YGLLRF+LPI P AS++F+ ++ITLSL+++IY SL+A+VQ D+++L+AYS++
Sbjct: 248 --MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ +I GAI+QM+S+ ++S AM + G LY++ KT I+ +GG+ N
Sbjct: 306 AHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTASIAEYGGVANT 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ A++FNF IG + +T LI SAAY+L +
Sbjct: 366 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAMAATTLILSAAYTLWMY 425
Query: 584 KNIIF 588
K +IF
Sbjct: 426 KRVIF 430
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKLGGYGLLRFALPIAPQASHFFAPMMIT 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V +I ++++
Sbjct: 278 LSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 338 GAMLLCTG-MLYDRTKTASIAEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 392
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 693 KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
K+ + P H W+PDV+ GA+++I +L KL + L++ LP+
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KLGGYG-----LLRFALPIAPQASHF 270
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ +++ L++ ++I ++ A+ Q + +R++AYS++AHMGL+ L +FN
Sbjct: 271 FAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTL----------GLFVFNR 320
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMF 862
+ + ++ G ++L ++T I + G+ P A +M+F
Sbjct: 321 IGQAGAIVQMLSYGVVS--GAMLLCTGMLYDRTKTASIAEYGGVANTMPRFAAFVMLFSM 378
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 379 ANIGLPGTSGFVGEFMV 395
>gi|392382103|ref|YP_005031300.1| NADH-quinone oxidoreductase, subunit M [Azospirillum brasilense
Sp245]
gi|356877068|emb|CCC97869.1| NADH-quinone oxidoreductase, subunit M [Azospirillum brasilense
Sp245]
Length = 508
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/373 (47%), Positives = 276/373 (73%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y +K WI F I Y +G+DG+S+ F+ L+ F+ + IL S + ++ ++ EYM AFL+
Sbjct: 65 YQLVEKAAWIPEFGISYHMGVDGISMLFVILSTFLMPLCILSSWEAVQTRVKEYMIAFLV 124
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L L++G FCALD +LFY+FFE LIP+F+IIG WGG+ R YAA KFFLYTL+GS+LML+
Sbjct: 125 LETLMVGMFCALDFVLFYMFFEGVLIPMFLIIGVWGGARRVYAAFKFFLYTLLGSVLMLL 184
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++ +Y+ + + +I + + Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAP
Sbjct: 185 AILAMYFAAGTT-DIPTITATHFPRNMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAP 243
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG LRF++P+ P+A+ YF+ ++ LS++++IY SL+A+ Q D+K
Sbjct: 244 TAGSVILAGVLLKMGGYGFLRFNIPMLPEATEYFAPMVYALSIVAVIYTSLVALAQEDMK 303
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMGFVT+G+F L + I+G+I M+SH ++S A+F+ +G +Y+++ TR I+
Sbjct: 304 KLIAYSSVAHMGFVTIGMFALNQQGIEGSIFTMLSHGIVSGALFLCVGVVYDRLHTREIA 363
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++ +P ++V F+ ++A+ LPGTSGF+GEF+++L A + N + L +T LI
Sbjct: 364 RYGGLVKNMPKYAVVFLFMTMASVGLPGTSGFVGEFLVLLGAFRDNTWVAFLAATGLILG 423
Query: 576 AAYSLCLSKNIIF 588
AY+L L + +++
Sbjct: 424 PAYALWLFRRVVY 436
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAG-------IFMITRMSPLFELSNTAL 101
K +P+HTWLPD+ +E PT S ++ + G I M+ + F AL
Sbjct: 225 KVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFNIPMLPEATEYFAPMVYAL 284
Query: 102 SIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMT 158
SI+ I + L+ + Q D+K++IAYS+++ +G++T+G L SIF +++
Sbjct: 285 SIVAVI------YTSLVALAQEDMKKLIAYSSVAHMGFVTIGMFALNQQGIEGSIFTMLS 338
Query: 159 HAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
H LFL G ++ + H ++I GGL K MP + L ++ VG P SGF
Sbjct: 339 HGIVSGALFLCVG-VVYDRLHTREIARYGGLVKNMPKYAVVFLFMTMASVGLPGTSGFVG 397
Query: 219 K 219
+
Sbjct: 398 E 398
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 16/256 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML I +Y GT ++ +I N+ + L
Sbjct: 167 AAFKFFLYTLLGSVLMLLAILAMYFAAGTTDIPTITATHFPRNMQLWLW----LAFFASF 222
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + A +++L+ K+ + + R I L + ++
Sbjct: 223 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFL-RFNIPMLPEATEYFAPMV 281
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
L+I ++I ++ A+ Q + K++IAYSS+AHMG + + ++ IF G+
Sbjct: 282 YALSIVAVIYTSLVALAQEDMKKLIAYSSVAHMGFVTIGMFALNQQGIEGSIFTMLSHGI 341
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
+ GA + + + + + T E+ + GL + P A++ + + G P
Sbjct: 342 ---------VSGALFLCVGVVYDRLH-TREIARYGGLVKNMPKYAVVFLFMTMASVGLPG 391
Query: 870 TIGFYAKFFIFEKIFE 885
T GF +F + F
Sbjct: 392 TSGFVGEFLVLLGAFR 407
>gi|192291658|ref|YP_001992263.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris TIE-1]
gi|192285407|gb|ACF01788.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodopseudomonas palustris TIE-1]
Length = 505
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/369 (51%), Positives = 271/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S + ++ EYM AFLIL L
Sbjct: 72 EKAPWLGN-TITYHMGLDGISLPLVILTTAIMPFCIIASWRSVTVRVREYMIAFLILETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 131 MIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + + S+ Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LYWNAGTT-DIPTLMRTSVPSGLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FPDAS YF+ LI TLS+I+IIY SL+A++Q DIKKLIA
Sbjct: 250 VVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTLSVIAIIYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + GA+ QM+SH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGTTQGVAGAVFQMVSHGIVSGALFLCVGVVYDRMHTREIAAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEF+ +L + N L +T +I SA Y+
Sbjct: 370 LVNRMPLYALVFLVFTMANVGLPGTSGFVGEFLTLLGTFRVNIPTATLATTGVILSAGYA 429
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 430 LWLYRKVVF 438
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F ++ + +++
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ ++F +++H
Sbjct: 286 LSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAG---AVFQMVSHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ + L+ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPLYALVFLVFTMANVGLPGTSGFVGE 400
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 38/313 (12%)
Query: 586 IIFVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F++ + +MI S +L+ YL E L+ + L + I +++S K+F+ +
Sbjct: 122 IAFLILETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYAS---FKFFLYTL 178
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S ML I LY GT ++ ++ ++ + + L + K+ + P H
Sbjct: 179 LGSVLMLLAIMALYWNAGTTDIPTLMR----TSVPSGLQTWAWLAFFASFAVKMPMWPVH 234
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLIL 752
W+PD + A T + L I+ ++ ++ LP+ + + ++ L
Sbjct: 235 TWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTL 286
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
++ ++I ++ A+ Q + K++IAYSS+AHMG + I + T +F G+
Sbjct: 287 SVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAGAVFQMVSHGI--- 343
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ GA + + + + + T E+ + GL R P AL+ ++F + G P T G
Sbjct: 344 ------VSGALFLCVGVVYDRMH-TREIAAYGGLVNRMPLYALVFLVFTMANVGLPGTSG 396
Query: 873 FYAKFFIFEKIFE 885
F +F F
Sbjct: 397 FVGEFLTLLGTFR 409
>gi|170695686|ref|ZP_02886829.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia graminis C4D1M]
gi|170139485|gb|EDT07670.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia graminis C4D1M]
Length = 517
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 276/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +G+DG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 69 WSPTFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFLMLSGFMQGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGM+F++ FEATLIP++++IGTWG SNRSYAA+KFF + +GSL+ML+SM+YLY
Sbjct: 129 FTSLDGMMFFVSFEATLIPLYLLIGTWGHSNRSYAAVKFFFVSFLGSLMMLMSMLYLY-S 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + + Q+ +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 188 QTHSFDLALWRETRLGTMPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLKLG YGLLRF+LPI P AS++F+ ++ITLSL+++IY SL+A+VQ D+++L+AYS++
Sbjct: 248 --MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ +I GAI+QM+S+ ++S AM + G LY++ KT I +GG+ N
Sbjct: 306 AHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTAAIDEYGGVANT 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ A++FNF IG + ++ L+ SAAY+L +
Sbjct: 366 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAMAASTLVLSAAYTLWMY 425
Query: 584 KNIIF 588
K +IF
Sbjct: 426 KRVIF 430
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKLGGYGLLRFALPIAPQASHFFAPMMIT 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V +I ++++
Sbjct: 278 LSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 338 GAMLLCTG-MLYDRTKTAAIDEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 392
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 123/261 (47%), Gaps = 36/261 (13%)
Query: 629 SEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIV 688
S AA+K+F + L S ML + LY T + +L +++ +L + ++ L L
Sbjct: 161 SYAAVKFFFVSFLGSLMMLMSMLYLYSQTHSFDL-ALWRETRLGTMPQVLIFLGFL---A 216
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
K+ + P H W+PDV+ GA+++I +L KL + L++ LP+
Sbjct: 217 AFGVKVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KLGGYG-----LLRFALPIAPQ 266
Query: 745 ----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+ +++ L++ ++I ++ A+ Q + +R++AYS++AHMGL+ L
Sbjct: 267 ASHFFAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTL----------GLF 316
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCN--KTDELDIFIGLHQRNPWCALIMM 858
+FN + + ++ G ++L + KT +D + G+ P A +M
Sbjct: 317 VFNRIGQAGAIVQMLSYGVVS--GAMLLCTGMLYDRTKTAAIDEYGGVANTMPRFAAFVM 374
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+F + G P T GF +F +
Sbjct: 375 LFSMANIGLPGTSGFVGEFMV 395
>gi|39936003|ref|NP_948279.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris CGA009]
gi|39649857|emb|CAE28379.1| NADH-ubiquinone dehydrogenase chain M [Rhodopseudomonas palustris
CGA009]
Length = 505
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/369 (51%), Positives = 271/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S + ++ EYM AFLIL L
Sbjct: 72 EKAPWLGN-TITYHMGLDGISLPLVILTTAIMPFCIIASWRSVTVRVREYMIAFLILETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 131 MIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + + S+ Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LYWNAGTT-DIPTLMRTSVPSGLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FPDAS YF+ LI TLS+I+IIY SL+A++Q DIKKLIA
Sbjct: 250 VVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTLSVIAIIYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + GA+ QM+SH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGTTQGVAGAVFQMVSHGIVSGALFLCVGVVYDRMHTREIAAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEF+ +L + N L +T +I SA Y+
Sbjct: 370 LVNRMPLYALVFMVFTMANVGLPGTSGFVGEFLTLLGTFRVNIPTATLATTGVILSAGYA 429
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 430 LWLYRKVVF 438
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F ++ + +++
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ ++F +++H
Sbjct: 286 LSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAG---AVFQMVSHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPLYALVFMVFTMANVGLPGTSGFVGE 400
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 38/313 (12%)
Query: 586 IIFVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F++ + +MI S +L+ YL E L+ + L + I +++S K+F+ +
Sbjct: 122 IAFLILETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYAS---FKFFLYTL 178
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S ML I LY GT ++ ++ ++ + + L + K+ + P H
Sbjct: 179 LGSVLMLLAIMALYWNAGTTDIPTLMR----TSVPSGLQTWAWLAFFASFAVKMPMWPVH 234
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLIL 752
W+PD + A T + L I+ ++ ++ LP+ + + ++ L
Sbjct: 235 TWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTL 286
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
++ ++I ++ A+ Q + K++IAYSS+AHMG + I + T +F G+
Sbjct: 287 SVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAGAVFQMVSHGI--- 343
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ GA + + + + + T E+ + GL R P AL+ M+F + G P T G
Sbjct: 344 ------VSGALFLCVGVVYDRMH-TREIAAYGGLVNRMPLYALVFMVFTMANVGLPGTSG 396
Query: 873 FYAKFFIFEKIFE 885
F +F F
Sbjct: 397 FVGEFLTLLGTFR 409
>gi|330821329|ref|YP_004350191.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia gladioli BSR3]
gi|327373324|gb|AEA64679.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia gladioli BSR3]
Length = 517
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/401 (47%), Positives = 294/401 (73%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
+ + +++GLL V P +GF + + + K W+ F + +G+DGLSLW + L+
Sbjct: 36 LALVGAIVGLL--VTVPLVAGFDAHNTAAQFTEYKPWLSAFGSAWRMGVDGLSLWLVVLS 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TL+I++ S + + ++A+Y +FLILSGL+IG F +LDGMLF+IFFEATLIP+F++I
Sbjct: 94 AFTTLVIVIASWESVTTRVAQYHGSFLILSGLMIGVFTSLDGMLFFIFFEATLIPLFVLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG +NR+YAAIKFF + GSLLML +M+YL+ +++ +F++ W + + Q+ +F
Sbjct: 154 GTWGHANRAYAAIKFFFISFAGSLLMLAAMLYLFGVTH-TFDMAVWQKAHLGFTPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +V L M+K+G YG LRF+LPI PDA++
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLQDVYTDGPTGAAVSLG--MIKIGGYGFLRFALPITPDAAH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
Y + ++I LSLI+++Y SL+A+ Q D+ K++AYS++AHMG VTLG+F+ ++SI GAI+Q
Sbjct: 271 YLAPVMIGLSLIAVVYASLLALAQKDMAKMLAYSAVAHMGLVTLGVFLFDQMSITGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
MIS+ ++ AMF+ +G LY++ KTR I+ + G++N +P ++F ++F++AN LPGTSGF
Sbjct: 331 MISYGFVAGAMFLCVGALYDRTKTRAIAEYSGVVNTMPRLALFAVLFAMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEF++I+ AV+ NF IG + + LI SAAY+L + K +IF
Sbjct: 391 VGEFLVIMGAVRVNFWIGAIAALTLILSAAYTLWMLKRVIF 431
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 10/200 (5%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T L FL K +P+HTWL D +GPT A+ + M+ G
Sbjct: 198 WQKAHLGFTPQLLVFLGFFAAFAVKVPMWPVHTWLQDVYTDGPTGAAVSLG---MIKIGG 254
Query: 85 FMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R + P+ + ++ +++ + I + LL + Q D+ +++AYS ++ +G +T+
Sbjct: 255 YGFLRFALPITPDAAHYLAPVMIGLSLIAVVYASLLALAQKDMAKMLAYSAVAHMGLVTL 314
Query: 143 GL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G+ + T +I ++++ F +FL G++ K + I G+ MP +
Sbjct: 315 GVFLFDQMSITGAIVQMISYGFVAGAMFLCVGALYDRTK-TRAIAEYSGVVNTMPRLALF 373
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
+++ ++ VG P SGF +
Sbjct: 374 AVLFAMANVGLPGTSGFVGE 393
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 50/266 (18%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AAIK+F + S ML + L+G+T T ++ V + ++ + L L
Sbjct: 164 AAIKFFFISFAGSLLMLAAMLYLFGVTHTFDMA----VWQKAHLGFTPQLLVFLGFFAAF 219
Query: 691 SFKLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLI 735
+ K+ + P H W+ DVY GA++ + ++ L TP + +
Sbjct: 220 AVKVPMWPVHTWLQDVYTDGPTGAAVSLGMIKIGGYGFLRFALPITPDAAHY-------- 271
Query: 736 KCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTS 795
L P++I L++ +++ ++ A+ Q + +M+AYS++AHMGL+ +
Sbjct: 272 --LAPVMIG-------LSLIAVVYASLLALAQKDMAKMLAYSAVAHMGLVTLGV------ 316
Query: 796 HNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWC 853
+F+ S + +I+Y F F + L + T KT + + G+ P
Sbjct: 317 ----FLFDQMSITGAIVQMISYGFVAGAMFLCVGALYDRT--KTRAIAEYSGVVNTMPRL 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
AL ++F + G P T GF +F +
Sbjct: 371 ALFAVLFAMANVGLPGTSGFVGEFLV 396
>gi|389691130|ref|ZP_10180023.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Microvirga sp. WSM3557]
gi|388589373|gb|EIM29662.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Microvirga sp. WSM3557]
Length = 503
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/425 (45%), Positives = 291/425 (68%), Gaps = 3/425 (0%)
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKI 224
+L L + I+ ++ + + + + T T L+ L++ S + +
Sbjct: 12 ILPLVGAAFILTLRGDSEAARSNARWAALATTIATFLLSLVAWARFDITSASFQLVESHA 71
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ I + LG+DG S+ + LT F+ IL S D I+ ++ EY AFL+L +IG
Sbjct: 72 WLTD-TIRFKLGVDGFSMPLVLLTTFLMPFCILASWDSIETRVKEYFVAFLVLETTMIGV 130
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
FCALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ +Y+
Sbjct: 131 FCALDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAIMAMYWT 190
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ + +I + QIWL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA
Sbjct: 191 AGTT-DIPTLLAYKFASNLQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
++LK+G YG +R SLP+FPDAS YF+ L+ LS+I+IIY SL+A++Q DIKKLIAYSS+
Sbjct: 250 GVLLKMGGYGFVRVSLPMFPDASLYFAPLVYALSVIAIIYTSLVALMQEDIKKLIAYSSV 309
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMGFVT+G+F + + IQGA+ MISH L+S A+F+ +G +Y++M TR I +GG++N
Sbjct: 310 AHMGFVTMGLFSMNEQGIQGAMFTMISHGLVSGALFLCVGVIYDRMHTREIKAYGGLVNR 369
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P ++V F+I ++AN +LPGTSGFIGEF+ ++ A + N + ++ +I SAAY+L L
Sbjct: 370 MPLYAVVFLILTMANVALPGTSGFIGEFLTLMGAFRSNTWVAFFATSGVILSAAYALWLY 429
Query: 584 KNIIF 588
+ +++
Sbjct: 430 RRVVY 434
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 107/196 (54%), Gaps = 21/196 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R+S P+F ++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFVRVSLPMFPDASLYFAPLVYA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGLFSMNEQGIQG---AMFTMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK- 219
LFL G +I + H ++I+ GGL MP+ + LI ++ V P SGF +
Sbjct: 339 LVSGALFLCVG-VIYDRMHTREIKAYGGLVNRMPLYAVVFLILTMANVALPGTSGFIGEF 397
Query: 220 ------DKKKIWIDYF 229
+ W+ +F
Sbjct: 398 LTLMGAFRSNTWVAFF 413
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 27/294 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ +L S ML I +Y
Sbjct: 135 DLVLFYLFFEAGLIPMFLIIGIWGGKRRIYAS---FKFFLYTLLGSVLMLLAIMAMYWTA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT ++ ++ +N+ + L + K+ + P H W+PD + A +++
Sbjct: 192 GTTDIPTLLAYKFASNLQIWLW----LAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRM 773
L+ L + ++ LP+ + + ++ L++ ++I ++ A+ Q + K++
Sbjct: 248 LAGV----LLKMGGYGFVRVSLPMFPDASLYFAPLVYALSVIAIIYTSLVALMQEDIKKL 303
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
IAYSS+AHMG + + S+ +F GL + GA + + + +
Sbjct: 304 IAYSSVAHMGFVTMGLFSMNEQGIQGAMFTMISHGL---------VSGALFLCVGVIYDR 354
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ T E+ + GL R P A++ +I + P T GF +F F +
Sbjct: 355 MH-TREIKAYGGLVNRMPLYAVVFLILTMANVALPGTSGFIGEFLTLMGAFRSN 407
>gi|270158102|ref|ZP_06186759.1| NADH-quinone oxidoreductase M subunit [Legionella longbeachae
D-4968]
gi|289163633|ref|YP_003453771.1| NADH-quinone oxidoreductase chain M [Legionella longbeachae NSW150]
gi|269990127|gb|EEZ96381.1| NADH-quinone oxidoreductase M subunit [Legionella longbeachae
D-4968]
gi|288856806|emb|CBJ10617.1| NADH-quinone oxidoreductase chain M [Legionella longbeachae NSW150]
Length = 501
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/376 (52%), Positives = 281/376 (74%), Gaps = 13/376 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ I Y LGIDGLSL I L+ F LI++L + + I ++++Y++AFLI+ GL++G
Sbjct: 68 WMPALGISYSLGIDGLSLLLIVLSVFTNLIVLLATWESITSRVSQYLAAFLIMQGLLVGV 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+F+EATLIP+++IIG WG NR YAAIKFFLYT +GS+LML S +Y+ YI
Sbjct: 128 FSALDAILFYVFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLASFLYMGYI 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ +FNI +++ + + Q +FI FF+ FAIKIP++P+HTWLPDAH EAP GSV+LA
Sbjct: 188 AG-TFNIEAFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPAGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AI+LKLG YG +RFSLPI PDA ++ ++I LSLI+I+YI+L+A++Q D+K+LIAYSSI
Sbjct: 247 AILLKLGAYGFIRFSLPIVPDACNRYAGVMIALSLIAIVYIALVAIIQKDMKRLIAYSSI 306
Query: 464 AHMGFVTLG---IFMLTKIS--------IQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
+HMGFVTLG IF + K S ++GAI+ MISHA +SS +F +G++Y++M TR
Sbjct: 307 SHMGFVTLGSFAIFAIAKQSGLSGAGLILEGAIVVMISHAFVSSGLFAGVGYIYDRMHTR 366
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
+++FGGI+N +P F+ FF++F +AN +PGTSGF+GEFM+I+ ++K F + +T L
Sbjct: 367 KLADFGGIVNTMPMFASFFMLFCMANAGMPGTSGFVGEFMVIVGSLKAGFWVAFWAATTL 426
Query: 573 IFSAAYSLCLSKNIIF 588
I SA Y+L + K +IF
Sbjct: 427 ITSAGYNLWMYKRVIF 442
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 34/267 (12%)
Query: 9 FLGWEIVGMASYLLIGF---------WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTW 59
FLG ++ +AS+L +G+ +Y L +TA F+ +G K FP+HTW
Sbjct: 171 FLG-SVLMLASFLYMGYIAGTFNIEAFYAIKLGMTAQTLIFIAFFLGFAIKIPMFPVHTW 229
Query: 60 LPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGL 117
LPD+ +++ AA ++ G + R S P+ + N +++ + I ++ L
Sbjct: 230 LPDAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACNRYAGVMIALSLIAIVYIAL 289
Query: 118 LGIIQNDIKRIIAYSTLSQLGYMTVG----------LGVSAYTV----SIFHLMTHAFFK 163
+ IIQ D+KR+IAYS++S +G++T+G G+S + +I +++HAF
Sbjct: 290 VAIIQKDMKRLIAYSSISHMGFVTLGSFAIFAIAKQSGLSGAGLILEGAIVVMISHAFVS 349
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK---- 219
+ LF G I M H + + + GG+ MP+ ++ ++ G P SGF +
Sbjct: 350 SGLFAGVGYIYDRM-HTRKLADFGGIVNTMPMFASFFMLFCMANAGMPGTSGFVGEFMVI 408
Query: 220 ---DKKKIWIDYFNIYYFLGIDGLSLW 243
K W+ ++ + G +LW
Sbjct: 409 VGSLKAGFWVAFWAATTLITSAGYNLW 435
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 36/285 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N ++ AAIK+F+ L S ML + I GT +++ F I
Sbjct: 144 LIPMYLIIGIWGSDNRVY---AAIKFFLYTFLGSVLMLASFLYMGYIAGTFNIEA-FYAI 199
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
KL +++ ++ L G + K+ + P H W+PD + G S+++ +L KL
Sbjct: 200 KLGMTAQTLIFIAFFL---GFAIKIPMFPVHTWLPDAHTEAPAGGSVVLAAILL---KLG 253
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ I+ LP+V + + +++ L++ +++ + AI Q + KR+IAYSSI+H
Sbjct: 254 AYG-----FIRFSLPIVPDACNRYAGVMIALSLIAIVYIALVAIIQKDMKRLIAYSSISH 308
Query: 782 MGLML---FSIISIKT----SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
MG + F+I +I S LI+ + + +I++ F G F + + +
Sbjct: 309 MGFVTLGSFAIFAIAKQSGLSGAGLIL----EGAIVVMISHAFVSSGLFAGVGYIYDRM- 363
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
T +L F G+ P A M+F + AG P T GF +F +
Sbjct: 364 -HTRKLADFGGIVNTMPMFASFFMLFCMANAGMPGTSGFVGEFMV 407
>gi|316933905|ref|YP_004108887.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Rhodopseudomonas palustris DX-1]
gi|315601619|gb|ADU44154.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodopseudomonas palustris DX-1]
Length = 505
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/369 (51%), Positives = 270/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S + ++ EYM AFLIL L
Sbjct: 72 EKAPWLGA-TITYHMGLDGISLPLVILTTAIMPFCIIASWRSVTVRVREYMIAFLILETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 131 MIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + + + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LYWNAGTT-DIPTLMRTPVPGGLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FPDAS YF+ LI TLS+I+IIY SL+A++Q DIKKLIA
Sbjct: 250 VVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTLSVIAIIYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + GA+ QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGTTQGVAGAVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEF+ +L + N L +T +I SA Y+
Sbjct: 370 LVNRMPLYALVFMVFTMANVGLPGTSGFVGEFLTLLGTFRVNVPTATLATTGVILSAGYA 429
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 430 LWLYRKVVF 438
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F ++ + +++
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ ++F +++H
Sbjct: 286 LSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAG---AVFQMISHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPLYALVFMVFTMANVGLPGTSGFVGE 400
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 38/313 (12%)
Query: 586 IIFVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F++ + +MI S +L+ YL E L+ + L + I +++S K+F+ +
Sbjct: 122 IAFLILETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYAS---FKFFLYTL 178
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S ML I LY GT ++ ++ + + + L + K+ + P H
Sbjct: 179 LGSVLMLLAIMALYWNAGTTDIPTLMR----TPVPGGLQTWAWLAFFASFAVKMPMWPVH 234
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLIL 752
W+PD + A T + L I+ ++ ++ LP+ + + ++ L
Sbjct: 235 TWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTL 286
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
++ ++I ++ A+ Q + K++IAYSS+AHMG + I + T +F G+
Sbjct: 287 SVIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAGAVFQMISHGI--- 343
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ GA + + + + + T E+ + GL R P AL+ M+F + G P T G
Sbjct: 344 ------VSGALFLCVGVVYDRMH-TREIAAYGGLVNRMPLYALVFMVFTMANVGLPGTSG 396
Query: 873 FYAKFFIFEKIFE 885
F +F F
Sbjct: 397 FVGEFLTLLGTFR 409
>gi|114777373|ref|ZP_01452370.1| NADH dehydrogenase subunit M [Mariprofundus ferrooxydans PV-1]
gi|114552155|gb|EAU54657.1| NADH dehydrogenase subunit M [Mariprofundus ferrooxydans PV-1]
Length = 420
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 265/351 (75%), Gaps = 6/351 (1%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
++ WI F++ Y LG+DG+S+ FI LT+ +T+I I+ + + I+ ++ EYM AFL+L
Sbjct: 68 EELHPWISTFHVNYQLGVDGISMPFIILTSLLTIICIISAWECIQTRVKEYMLAFLVLET 127
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
+IG FCALD +LFY F+EA LIP+++IIG WGG NR YA +KFFLYTL GS+LMLI+++
Sbjct: 128 TLIGVFCALDAILFYFFWEAMLIPMYLIIGVWGGKNRVYATLKFFLYTLAGSVLMLIAVL 187
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
+Y+ + +F++L++ Q W++I FFIAFA+K+P+WP+HTWLPDAH EAPT G
Sbjct: 188 AMYFKAGHTFSLLAYMDYPFDFTWQFWIWIAFFIAFAVKVPMWPVHTWLPDAHTEAPTAG 247
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILA I+LK+G YG LRFSLPI PDAS YF ++ LSL++I+YISL+AM+Q D+K+LI
Sbjct: 248 SVILAGILLKMGAYGFLRFSLPILPDASQYFVPFMVILSLVAIVYISLVAMMQTDMKRLI 307
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSSIAHMGFVTLG FM T+++++GA+ MISH +++A+F+ +G +Y+++ TR I+ +G
Sbjct: 308 AYSSIAHMGFVTLGTFMFTQVALEGALFGMISHGFVAAALFLCVGVMYDRLHTREIAAYG 367
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIIL-----SAVKFNFCI 564
G+ NV+P F+ I+F++AN +LPG S F+ E M+++ SA+ C+
Sbjct: 368 GVANVMPIFAAVIILFAMANVALPGASSFVAEIMVLIGTFDASAITQRICL 418
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFM 86
D P T ++ I K +P+HTWLPD+ E PT A ++I A ++ G +
Sbjct: 204 DYPFDFTWQFWIWIAFFIAFAVKVPMWPVHTWLPDAHTEAPT-AGSVILAGILLKMGAYG 262
Query: 87 ITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG- 143
R S P+ + S + ++ + + ++ L+ ++Q D+KR+IAYS+++ +G++T+G
Sbjct: 263 FLRFSLPILPDASQYFVPFMVILSLVAIVYISLVAMMQTDMKRLIAYSSIAHMGFVTLGT 322
Query: 144 --LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
A ++F +++H F A LFL G ++ + H ++I GG+ MPI +
Sbjct: 323 FMFTQVALEGALFGMISHGFVAAALFLCVG-VMYDRLHTREIAAYGGVANVMPIFAAVII 381
Query: 202 IGLLSLVGAPFFSGFYSK 219
+ ++ V P S F ++
Sbjct: 382 LFAMANVALPGASSFVAE 399
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 99/206 (48%), Gaps = 18/206 (8%)
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
+ + K+ + P H W+PD + A +++L+ + L + Y L + LP++ + +
Sbjct: 221 IAFAVKVPMWPVHTWLPDAHTEAPTAGSVILA---GILLKMGAYGFL-RFSLPILPDASQ 276
Query: 748 ----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
++IL++ +++ ++ A+ Q + KR+IAYSSIAHMG +++ T +
Sbjct: 277 YFVPFMVILSLVAIVYISLVAMMQTDMKRLIAYSSIAHMGF-----VTLGTFMFTQV--- 328
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ + LF +I++ F F + ++ + T E+ + G+ P A ++++F +
Sbjct: 329 ALEGALFGMISHGFVAAALFLCVGVMYDRL--HTREIAAYGGVANVMPIFAAVIILFAMA 386
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKI 889
P F A+ + F+ I
Sbjct: 387 NVALPGASSFVAEIMVLIGTFDASAI 412
>gi|408379501|ref|ZP_11177095.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium
albertimagni AOL15]
gi|407746985|gb|EKF58507.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium
albertimagni AOL15]
Length = 503
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/409 (48%), Positives = 292/409 (71%), Gaps = 13/409 (3%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSA 272
+GF +K W+ I Y +G+DG+S+ F+ LT + IL S ++K+L EYM A
Sbjct: 62 TGFQMVEKHG-WLGT-GISYHVGVDGISMLFVILTTLLMPFCILASWTSVEKRLKEYMIA 119
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FLIL L+IG F +LD +LFY+FFEA LIP+FIIIG WGG +R YA+ KFFLYTL+GS+L
Sbjct: 120 FLILETLMIGVFVSLDIVLFYVFFEAGLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVL 179
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++++ +Y+ + + +I + Q Q WL++ FF +FA+K+P+WP+HTWLPDAHV
Sbjct: 180 MLLAIMAMYWDAGTT-DIAALLQHDFPPQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHV 238
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
+APT GSVILA I+LKLG YG LRFSLP+FP AS +F+ + TLS+I+IIY SL+A++Q
Sbjct: 239 QAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFTLSVIAIIYTSLVALMQD 298
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSS+AHMG+VT+GIF + +QGAI QMISH +S A+F+ +G +Y+++ TR
Sbjct: 299 DMKKLIAYSSVAHMGYVTMGIFAANQQGVQGAIFQMISHGFVSGALFLCVGVIYDRLHTR 358
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG++N +P +++ F++F++AN LPGTSGF+GEF+ ++ + N + + +T +
Sbjct: 359 EIAAYGGLVNNMPKYALAFMVFTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGV 418
Query: 573 IFSAAYSLCLSKNIIF------VLGQMIMISGNNLLSIYLGLELMSLTL 615
I SAAY+L L + ++F L M+ +S L++Y L++LT+
Sbjct: 419 ILSAAYALWLYRRVVFGALEKESLKSMLDLSTREKLTLY---PLIALTI 464
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q+D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 282 LSVIAIIYTSLVALMQDDMKKLIAYSSVAHMGYVTMGIFAANQQGVQG---AIFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 339 FVSGALFLCVG-VIYDRLHTREIAAYGGLVNNMPKYALAFMVFTMANVGLPGTSGFVGE 396
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 122/277 (44%), Gaps = 30/277 (10%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
K+ +++S K+F+ +L S ML I +Y GT ++ ++ ++ +
Sbjct: 160 KDRVYASY---KFFLYTLLGSVLMLLAIMAMYWDAGTTDIAALLQ----HDFPPQMQTWL 212
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKC 737
L + K+ + P H W+PD + G+ I+ +LL KL + + L
Sbjct: 213 WLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KLGGYGFLRFSL--P 266
Query: 738 LLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSH 796
+ PL ++ + L++ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 267 MFPLASDFFAPFVFTLSVIAIIYTSLVALMQDDMKKLIAYSSVAHMGYVTMGIFAANQ-- 324
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
+F +I++ F F + ++ + T E+ + GL P AL
Sbjct: 325 ------QGVQGAIFQMISHGFVSGALFLCVGVIYDRL--HTREIAAYGGLVNNMPKYALA 376
Query: 857 MMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
M+F + G P T GF +F +F W+ L
Sbjct: 377 FMVFTMANVGLPGTSGFVGEFLTLIGVFRVNT-WVAL 412
>gi|339503999|ref|YP_004691419.1| NADH-quinone oxidoreductase subunit NuoM [Roseobacter litoralis Och
149]
gi|338757992|gb|AEI94456.1| NADH-quinone oxidoreductase subunit NuoM [Roseobacter litoralis Och
149]
Length = 513
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/490 (41%), Positives = 319/490 (65%), Gaps = 39/490 (7%)
Query: 177 MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFL 235
++ + + N+ M T T L+ L L G P +GF +++ W+ + Y +
Sbjct: 23 LRGDDEAANLNAKRVAMFATVATFLVSLFILAGFDPQDTGFQFVEERD-WL--LGLEYKM 79
Query: 236 GIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIF 295
G+DG+S+ F+ LT F+ ++I S ++ ++ EYM AFL+L L++G F ALD +LFY+F
Sbjct: 80 GVDGISVLFVMLTTFMMPLVIAASWNVTLRVKEYMIAFLLLETLMLGVFMALDLVLFYLF 139
Query: 296 FEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWH 354
FEA LIP+F+IIG WGG+NR YA+ KFFLYT +GS+LML++M+ ++ + + +L H
Sbjct: 140 FEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMVGMFADAGTTDIEMLLRH 199
Query: 355 QLSITKIE----------QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAA 404
+ S + Q LF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAA
Sbjct: 200 EFSFADFDLLGIQIVGGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAA 259
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
I+LKLG YG +RFSLP+FP A+ ++ +I+ LS I+I+Y SL+A+VQ D+KKLIAYSS+A
Sbjct: 260 ILLKLGGYGFIRFSLPMFPVAADIWAPMILWLSAIAIVYTSLVALVQEDMKKLIAYSSVA 319
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVI 524
HMGFVT+GIF + + GAI QMISH IS A+F+ +G +Y++M TR I +GG++N +
Sbjct: 320 HMGFVTMGIFAANQQGVDGAIFQMISHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRM 379
Query: 525 PHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSK 584
P +++ F++F++AN LPGTSGF+GEF+ +++ + N + + +T +IFSAAY+L L +
Sbjct: 380 PAYALIFMLFTMANVGLPGTSGFVGEFLTLMAVFQVNTWVAAVATTGVIFSAAYALWLYR 439
Query: 585 NIIFVLGQMI--------------------MISGNNLLSIY--LGLELMSLTLCVLIASQ 622
+ V+G +I +++ LL +Y L L++ ++ L+A
Sbjct: 440 RV--VMGDLIKESLKSITDMTSRERWIFAPLVAMTLLLGVYPALVLDITGPSVAALVAGY 497
Query: 623 KNNIFSSEAA 632
+ ++EAA
Sbjct: 498 DTALSAAEAA 507
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELS-NTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F ++ + +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKLGGYGFIRFSLPMFPVAADIWAPMILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFVGE 405
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 572 LIFSAAYSLCLSKN---IIFVLGQMIMIS---GNNLLSIYLGLE--LMSLTLCVLIASQK 623
L+ +A++++ L I F+L + +M+ +L+ YL E L+ + L + I
Sbjct: 98 LVIAASWNVTLRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGA 157
Query: 624 NNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSI----FNVIKLNNINCSVL 679
N I++S K+F+ L S ML + ++ GT +++ + F+ + + ++
Sbjct: 158 NRIYAS---FKFFLYTFLGSVLMLVAMVGMFADAGTTDIEMLLRHEFSFADFDLLGIQIV 214
Query: 680 A----LSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-- 733
L L + K+ + P H W+PD + A T + L I+ +L
Sbjct: 215 GGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAP--------TAGSVVLAAILLKLGG 266
Query: 734 --LIKCLLPL----VINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLF 787
I+ LP+ W ++L L+ +++ ++ A+ Q + K++IAYSS+AHMG +
Sbjct: 267 YGFIRFSLPMFPVAADIWAPMILWLSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTM 326
Query: 788 SIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLH 847
I + D +F +I++ F I GA + + + + + T E+D + GL
Sbjct: 327 GIFAANQ--------QGVDGAIFQMISHGF-ISGALFLCVGVIYDRMH-TREIDAYGGLV 376
Query: 848 QRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
R P ALI M+F + G P T GF +F +F+
Sbjct: 377 NRMPAYALIFMLFTMANVGLPGTSGFVGEFLTLMAVFQ 414
>gi|110680449|ref|YP_683456.1| NADH dehydrogenase subunit M [Roseobacter denitrificans OCh 114]
gi|109456565|gb|ABG32770.1| NADH-quinone oxidoreductase chain M [Roseobacter denitrificans OCh
114]
Length = 513
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/490 (41%), Positives = 319/490 (65%), Gaps = 39/490 (7%)
Query: 177 MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFL 235
++ + + N+ M T T L+ L L G P +GF +++ W+ + Y +
Sbjct: 23 LRGDDEAANLNAKRVAMFATVATFLVSLFILAGFDPQDTGFQFVEERD-WL--LGLEYKM 79
Query: 236 GIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIF 295
G+DG+S+ F+ LT F+ ++I S ++ ++ EYM AFL+L L++G F ALD +LFY+F
Sbjct: 80 GVDGISVLFVMLTTFMMPLVIAASWNVTLRVKEYMIAFLLLETLMLGVFMALDLVLFYLF 139
Query: 296 FEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWH 354
FEA LIP+F+IIG WGG+NR YA+ KFFLYT +GS+LML++M+ ++ + + +L H
Sbjct: 140 FEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMVGMFADAGTTDIEMLLRH 199
Query: 355 QLSITKIE----------QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAA 404
+ + E Q LF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAA
Sbjct: 200 EFAFANFELLGVQIVGGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAA 259
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
I+LKLG YG +RFSLP+FP A+ ++ +I+ LS I+I+Y SL+A+VQ D+KKLIAYSS+A
Sbjct: 260 ILLKLGGYGFIRFSLPMFPVAADIWAPMILWLSAIAIVYTSLVALVQEDMKKLIAYSSVA 319
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVI 524
HMGFVT+GIF + + GAI QMISH IS A+F+ +G +Y++M TR I +GG++N +
Sbjct: 320 HMGFVTMGIFAANQQGVDGAIFQMISHGFISGALFLCVGVIYDRMHTRDIDAYGGLVNRM 379
Query: 525 PHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSK 584
P +++ F++F++AN LPGTSGF+GEF+ +++ + N + + +T +IFSAAY+L L +
Sbjct: 380 PAYALIFMLFTMANVGLPGTSGFVGEFLTLMAVFQVNTWVAAVATTGVIFSAAYALWLYR 439
Query: 585 NIIFVLGQMI--------------------MISGNNLLSIY--LGLELMSLTLCVLIASQ 622
+ V+G +I +++ LL +Y L L++ ++ L+A
Sbjct: 440 RV--VMGDLIKESLKSITDMTSRERWIFAPLVAMTLLLGVYPALVLDITGPSVAALVAGY 497
Query: 623 KNNIFSSEAA 632
+ ++EAA
Sbjct: 498 DTALSAAEAA 507
Score = 93.2 bits (230), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELS-NTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F ++ + +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKLGGYGFIRFSLPMFPVAADIWAPMILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H +DI GGL MP + ++ ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTRDIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFVGE 405
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 156/339 (46%), Gaps = 47/339 (13%)
Query: 572 LIFSAAYSLCLSKN---IIFVLGQMIMIS---GNNLLSIYLGLE--LMSLTLCVLIASQK 623
L+ +A++++ L I F+L + +M+ +L+ YL E L+ + L + I
Sbjct: 98 LVIAASWNVTLRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGA 157
Query: 624 NNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSI---------FNVIKLNNI 674
N I++S K+F+ L S ML + ++ GT +++ + F ++ + I
Sbjct: 158 NRIYAS---FKFFLYTFLGSVLMLVAMVGMFADAGTTDIEMLLRHEFAFANFELLGVQ-I 213
Query: 675 NCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL- 733
+ L L + K+ + P H W+PD + A T + L I+ +L
Sbjct: 214 VGGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAP--------TAGSVVLAAILLKLG 265
Query: 734 ---LIKCLLPL----VINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLML 786
I+ LP+ W ++L L+ +++ ++ A+ Q + K++IAYSS+AHMG +
Sbjct: 266 GYGFIRFSLPMFPVAADIWAPMILWLSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVT 325
Query: 787 FSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGL 846
I + D +F +I++ F I GA + + + + + T ++D + GL
Sbjct: 326 MGIFAANQ--------QGVDGAIFQMISHGF-ISGALFLCVGVIYDRMH-TRDIDAYGGL 375
Query: 847 HQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
R P ALI M+F + G P T GF +F +F+
Sbjct: 376 VNRMPAYALIFMLFTMANVGLPGTSGFVGEFLTLMAVFQ 414
>gi|430762375|ref|YP_007218232.1| NADH-ubiquinone oxidoreductase chain M [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430011999|gb|AGA34751.1| NADH-ubiquinone oxidoreductase chain M [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 508
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 285/377 (75%), Gaps = 13/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI FN++Y LG+DG+S+ I LT T+++ + + + +K ++A Y++AFLI+ GL+IG
Sbjct: 70 WIPAFNVHYHLGVDGISMPLILLTTLTTVLVTIAAWESVKDRVAYYLAAFLIMQGLMIGM 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+FFEA LIP+F++IG WGG R YA IKFFLYT +GS+ MLI++IY+Y+
Sbjct: 130 FSALDAVLFYVFFEAMLIPMFLVIGIWGGPRRVYATIKFFLYTFLGSVFMLIALIYMYFQ 189
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
++ SF IL +HQL + QI +F+ FF AFA+KIP++P+HTWLPDAHVEAPT GSVILA
Sbjct: 190 ADGSFAILDFHQLPLAMTAQILIFLAFFAAFAVKIPMFPVHTWLPDAHVEAPTGGSVILA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLK+G YG LRFSLPI PDAS L+ITLSLI+I+YI L+A+VQ D+KKLIAYSSI
Sbjct: 250 AIMLKIGGYGFLRFSLPITPDASAVLDVLVITLSLIAIVYIGLVALVQSDMKKLIAYSSI 309
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGF TLG F+ + I G ++QM+SH IS+AMF+++G LY+++ +
Sbjct: 310 AHMGFATLGFFIAFMIFRNTGDWTGASLGIAGGMVQMVSHGFISAAMFLAVGVLYDRLHS 369
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I ++GG++N +P F+ FF++F++AN LPGTSGF+GEFM+IL+A + +F + L +T
Sbjct: 370 RNIGDYGGVVNTMPWFASFFVLFAMANTGLPGTSGFVGEFMVILAAFRADFWLAFLAATT 429
Query: 572 LIFSAAYSLCLSKNIIF 588
LI +AAY+L L K +IF
Sbjct: 430 LILAAAYTLWLVKRVIF 446
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 113/214 (52%), Gaps = 26/214 (12%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
+ PLA+TA + FL K FP+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 200 HQLPLAMTAQILIFLAFFAAFAVKIPMFPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGGY 258
Query: 86 MITRMS-PLFELSNTALSI-ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+ ++ L + ++ + I ++GL+ ++Q+D+K++IAYS+++ +G+ T+G
Sbjct: 259 GFLRFSLPITPDASAVLDVLVITLSLIAIVYIGLVALVQSDMKKLIAYSSIAHMGFATLG 318
Query: 144 ------------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRN 185
LG++ V +++H F A +FL+ G ++ + H+++I +
Sbjct: 319 FFIAFMIFRNTGDWTGASLGIAGGMV---QMVSHGFISAAMFLAVG-VLYDRLHSRNIGD 374
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GG+ MP ++ ++ G P SGF +
Sbjct: 375 YGGVVNTMPWFASFFVLFAMANTGLPGTSGFVGE 408
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 42/281 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
A IK+F+ L S FML + +Y + F ++ + + ++ A L L
Sbjct: 164 ATIKFFLYTFLGSVFMLIALIYMY-----FQADGSFAILDFHQLPLAMTAQILIFLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G S+I+ ++ ++ LP+ +
Sbjct: 219 AFAVKIPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--------LRFSLPITPD 270
Query: 745 WQKILLILAI-FSLI----IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNL 799
+L +L I SLI IG V A+ Q + K++IAYSSIAHMG F+ + + +
Sbjct: 271 ASAVLDVLVITLSLIAIVYIGLV-ALVQSDMKKLIAYSSIAHMG---FATLGFFIAF--M 324
Query: 800 IIFNSCD---------SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRN 850
I N+ D G+ ++++ F F + +L + ++ + + G+
Sbjct: 325 IFRNTGDWTGASLGIAGGMVQMVSHGFISAAMFLAVGVLYDRLHSR--NIGDYGGVVNTM 382
Query: 851 PWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWL 891
PW A ++F + G P T GF +F + F WL
Sbjct: 383 PWFASFFVLFAMANTGLPGTSGFVGEFMVILAAFRAD-FWL 422
>gi|424890836|ref|ZP_18314435.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393173054|gb|EJC73099.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 503
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ LT F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHLGVDGISMLFVILTTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGVFVALDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ L+ +S+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLMGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 MSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ +++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLMGVFRVNT-WVAL 412
>gi|86749704|ref|YP_486200.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris HaA2]
gi|86572732|gb|ABD07289.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodopseudomonas palustris HaA2]
Length = 505
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 270/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I + +G+DG+SL F+ LT + IL S I ++ EYM AFL+L L
Sbjct: 72 EKAPWLGA-TIAFHMGVDGISLPFVILTTALMPFCILASWKSITVRVREYMMAFLVLETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 131 MIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + +I + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LYWTAGTT-DIPTLMTTAIPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFSLP+FPDAS YF+ L+ +LS+I+I+Y SL+A++Q DIKKLIA
Sbjct: 250 VVLAAIMLKMGGYGFLRFSLPMFPDASVYFAPLVFSLSVIAIVYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF + G++ QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGNTQGVAGSVFQMISHGIVSGALFLCVGVIYDRMHTREIAAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGF+GEF+ +L + N + + +I SAAY+
Sbjct: 370 LVNRMPIYAFVFLVFTMANVGLPGTSGFVGEFLTLLGTFRVNVPTATIATLGVILSAAYA 429
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 430 LWLYRKVVF 438
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA M+ G + R S P+F ++ + ++F
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGGYGFLRFSLPMFPDASVYFAPLVFS 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ S+F +++H
Sbjct: 286 LSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGNTQGVAG---SVFQMISHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MPI L+ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-VIYDRMHTREIAAYGGLVNRMPIYAFVFLVFTMANVGLPGTSGFVGE 400
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 115/263 (43%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ N+ + L
Sbjct: 169 ASFKFFLYTLLGSVLMLLAIMALYWTAGTTDIPTLMTTAIPRNLQT----WAWLAFFASF 224
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 225 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAIMLKMGGYGFLRFSLPMFPDAS 276
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ + ++ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I + T +F
Sbjct: 277 VYFAPLVFSLSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGNTQGVAGSVF 336
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P A + ++F
Sbjct: 337 QMISHGI---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNRMPIYAFVFLVFTM 386
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F
Sbjct: 387 ANVGLPGTSGFVGEFLTLLGTFR 409
>gi|159043877|ref|YP_001532671.1| NADH dehydrogenase subunit M [Dinoroseobacter shibae DFL 12]
gi|157911637|gb|ABV93070.1| proton-translocating NADH-quinone oxidoreductase [Dinoroseobacter
shibae DFL 12]
Length = 515
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/405 (47%), Positives = 283/405 (69%), Gaps = 15/405 (3%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T ++ L L G P +GF +++ W+ + Y +G+DG+S+ F+ LT F+ I
Sbjct: 42 TSVTFILSLFLLAGFDPQDTGFQFVEERP-WV--LGLTYKMGVDGISILFVMLTTFLMPI 98
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
I ++ ++ EYM AFL+L L+IG F ALD +LFY+FFEA LIP+F+IIG WGG+N
Sbjct: 99 TIASCWTVETRVKEYMIAFLVLETLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGAN 158
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWHQLSITKIE----------Q 363
R YA+ KFFLYT +GS+LML++M+ +Y + + L HQ T IE Q
Sbjct: 159 RIYASFKFFLYTFLGSVLMLVAMVAMYVDAGTTDIPTLLTHQFGTTTIEVLGIHILGGMQ 218
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
+ L++ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP
Sbjct: 219 VLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFP 278
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQG 483
AS + L++ LS I+I+Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF + + G
Sbjct: 279 VASDIMAPLVLWLSAIAIVYTSLVALVQTDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG 338
Query: 484 AIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
AI QMISH IS A+F+ +G +Y++M TR I +GG++N +P +++ F++F++AN LPG
Sbjct: 339 AIFQMISHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMLFTMANVGLPG 398
Query: 544 TSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
TSGF+GEF+ ++ + N + + +T +I SA Y+L L + ++F
Sbjct: 399 TSGFVGEFLTLVGVFQVNTWVAFVAATGVILSAGYALWLYRRVVF 443
Score = 93.2 bits (230), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 106/179 (59%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F +++ ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVASDIMAPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALVQTDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALVFMLFTMANVGLPGTSGFVGE 405
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 143/304 (47%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVAMYVDA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLL---LIIVGLSF------KLGISPFHMWVPDVY- 707
GT ++ ++ + VL + +L +++ L+F K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLTH-QFGTTTIEVLGIHILGGMQVLLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + PLV+ W L+ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVASDIMAPLVL-W------LSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALVQTDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGVDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P AL+ M+F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALVFMLFTMANVGLPGTSGFVGEFLTLV 410
Query: 882 KIFE 885
+F+
Sbjct: 411 GVFQ 414
>gi|323530086|ref|YP_004232238.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. CCGE1001]
gi|323387088|gb|ADX59178.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. CCGE1001]
Length = 527
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/365 (49%), Positives = 275/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +G+DG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 78 WSPTFDIAWHVGVDGISLWLVALTALTTIIIVIASWESITERTAQYFGAFLMLSGFMQGV 137
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGMLF++ FEATLIP++++IGTWG SNRSYAA+KFF + +GSL+ML+SM+YLY
Sbjct: 138 FTSLDGMLFFVSFEATLIPLYLLIGTWGQSNRSYAAVKFFFVSFLGSLMMLMSMLYLY-S 196
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + + Q+ +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 197 QTHSFDLALWRETRLGTMPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 256
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLKLG YGLLRF+LPI P AS++F+ ++ITLSL++++Y SL+A+VQ D+++L+AYS++
Sbjct: 257 --MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVVYASLLALVQTDMRRLLAYSTV 314
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ +I GA++QM+S+ ++S AM + G LY++ +T I +GG+ N
Sbjct: 315 AHMGLVTLGLFVFNRIGQAGAVVQMLSYGVVSGAMLLCTGMLYDRTRTAAIDGYGGVANT 374
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ ++FNF IG + ++ LI SAAY+L +
Sbjct: 375 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGAIAASTLILSAAYTLWMY 434
Query: 584 KNIIF 588
K ++F
Sbjct: 435 KRVVF 439
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 230 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKLGGYGLLRFALPIAPQASHFFAPMMIT 286
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V ++ ++++
Sbjct: 287 LSLVAVVYASLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAVVQMLSYGVVS 346
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 347 GAMLLCTG-MLYDRTRTAAIDGYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 401
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 39/280 (13%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + Q N S AA+K+F + L S ML + LY T + +L +++
Sbjct: 154 LIPLYLLIGTWGQSNR---SYAAVKFFFVSFLGSLMMLMSMLYLYSQTHSFDL-ALWRET 209
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
+L + ++ L L K+ + P H W+PDV+ GA+++I +L KL
Sbjct: 210 RLGTMPQVLIFLGFL---AAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KLG 261
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ L++ LP+ + +++ L++ +++ ++ A+ Q + +R++AYS++AH
Sbjct: 262 GYG-----LLRFALPIAPQASHFFAPMMITLSLVAVVYASLLALVQTDMRRLLAYSTVAH 316
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--E 839
MGL+ L +FN + + ++ G ++L ++T
Sbjct: 317 MGLVTL----------GLFVFNRIGQAGAVVQMLSYGVVS--GAMLLCTGMLYDRTRTAA 364
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+D + G+ P A +M+F + G P T GF +F +
Sbjct: 365 IDGYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMV 404
>gi|407710889|ref|YP_006794753.1| NADH-quinone oxidoreductase subunit M [Burkholderia phenoliruptrix
BR3459a]
gi|407239572|gb|AFT89770.1| NADH-quinone oxidoreductase subunit M [Burkholderia phenoliruptrix
BR3459a]
Length = 518
Score = 385 bits (988), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/365 (49%), Positives = 275/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +G+DG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 69 WSPTFDIAWHVGVDGISLWLVALTALTTIIIVIASWESITERTAQYFGAFLMLSGFMQGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGMLF++ FEATLIP++++IGTWG SNRSYAA+KFF + +GSL+ML+SM+YLY
Sbjct: 129 FTSLDGMLFFVSFEATLIPLYLLIGTWGQSNRSYAAVKFFFVSFLGSLMMLMSMLYLY-S 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + + Q+ +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 188 QTHSFDLALWRETRLGTMPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLKLG YGLLRF+LPI P AS++F+ ++ITLSL++++Y SL+A+VQ D+++L+AYS++
Sbjct: 248 --MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVVYASLLALVQTDMRRLLAYSTV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ +I GA++QM+S+ ++S AM + G LY++ +T I +GG+ N
Sbjct: 306 AHMGLVTLGLFVFNRIGQAGAVVQMLSYGVVSGAMLLCTGMLYDRTRTAAIDGYGGVANT 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ ++FNF IG + ++ LI SAAY+L +
Sbjct: 366 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGAIAASTLILSAAYTLWMY 425
Query: 584 KNIIF 588
K ++F
Sbjct: 426 KRVVF 430
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKLGGYGLLRFALPIAPQASHFFAPMMIT 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V ++ ++++
Sbjct: 278 LSLVAVVYASLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAVVQMLSYGVVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 338 GAMLLCTG-MLYDRTRTAAIDGYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 392
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 39/280 (13%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + Q N S AA+K+F + L S ML + LY T + +L +++
Sbjct: 145 LIPLYLLIGTWGQSNR---SYAAVKFFFVSFLGSLMMLMSMLYLYSQTHSFDL-ALWRET 200
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
+L + ++ L L K+ + P H W+PDV+ GA+++I +L KL
Sbjct: 201 RLGTMPQVLIFLGFL---AAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KLG 252
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ L++ LP+ + +++ L++ +++ ++ A+ Q + +R++AYS++AH
Sbjct: 253 GYG-----LLRFALPIAPQASHFFAPMMITLSLVAVVYASLLALVQTDMRRLLAYSTVAH 307
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--E 839
MGL+ L +FN + + ++ G ++L ++T
Sbjct: 308 MGLVTL----------GLFVFNRIGQAGAVVQMLSYGVVS--GAMLLCTGMLYDRTRTAA 355
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+D + G+ P A +M+F + G P T GF +F +
Sbjct: 356 IDGYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMV 395
>gi|418296089|ref|ZP_12907933.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539521|gb|EHH08759.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium tumefaciens
CCNWGS0286]
Length = 503
Score = 385 bits (988), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W Y+ LG+DG+S+ F+ LT F+ +L S D I+K++ EYM AFL+L +
Sbjct: 68 EKHAWFGNIAAYH-LGVDGISMLFVILTTFLMPFCVLASWDSIEKRIKEYMIAFLLLEVV 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFEATLIP+FIIIG WGG +R YA+ KFFLYTL+GS+L +++++
Sbjct: 127 MIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLTMLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + ++ + Q WL++ F AF++K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DMTELLKYGFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA +MLKLG YG +RFSL +FP AS YF+ + TLS+++IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QGAI QM+SH ++S A+F+ +G +Y+++ TR IS +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREISAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F+IF++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFLTLIGVFRANTLVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V +IF +++H
Sbjct: 282 LSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + +I ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 131/311 (42%), Gaps = 26/311 (8%)
Query: 586 IIFVLGQMIMIS-----GNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F+L +++MI L ++ L+ + + + + K+ +++S K+F+ +
Sbjct: 118 IAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASY---KFFLYTL 174
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S + I +Y GT ++ + + L S K+ + P H
Sbjct: 175 LGSVLTMLAIMAMYWQAGTTDMTELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVH 230
Query: 701 MWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLI 758
W+PD + Q + +L KL + I L + PL ++ + L++ ++I
Sbjct: 231 TWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSL--SMFPLASDYFAPFVFTLSVLAII 288
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + IF G+
Sbjct: 289 YTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGI--------- 339
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
+ GA + + + + + T E+ + GL P A+ MIF + G P T GF +F
Sbjct: 340 VSGALFLCVGVVYDRLH-TREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFL 398
Query: 879 IFEKIFETQKI 889
+F +
Sbjct: 399 TLIGVFRANTL 409
>gi|417860265|ref|ZP_12505321.1| NADH dehydrogenase subunit M [Agrobacterium tumefaciens F2]
gi|338823329|gb|EGP57297.1| NADH dehydrogenase subunit M [Agrobacterium tumefaciens F2]
Length = 503
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W Y+ LG+DG+S+ F+ LT F+ +L S D I+K++ EYM AFL+L +
Sbjct: 68 EKHAWFGNIAAYH-LGVDGISMLFVILTTFLMPFCVLASWDSIEKRVKEYMIAFLLLEVV 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFEATLIP+FIIIG WGG +R YA+ KFFLYTL+GS+L +++++
Sbjct: 127 MIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLTMLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + ++ + Q WL++ F AF++K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DMTELLKYGFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA +MLKLG YG +RFSL +FP AS YF+ + TLS+++IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QGAI QM+SH ++S A+F+ +G +Y+++ TR IS +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREISAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F++F++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAFMVFTMANVGLPGTSGFVGEFLTLIGVFRANTLVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V +IF +++H
Sbjct: 282 LSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREISAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 26/311 (8%)
Query: 586 IIFVLGQMIMIS-----GNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F+L +++MI L ++ L+ + + + + K+ +++S K+F+ +
Sbjct: 118 IAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASY---KFFLYTL 174
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S + I +Y GT ++ + + L S K+ + P H
Sbjct: 175 LGSVLTMLAIMAMYWQAGTTDMTELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVH 230
Query: 701 MWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLI 758
W+PD + Q + +L KL + I L + PL ++ + L++ ++I
Sbjct: 231 TWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSL--SMFPLASDYFAPFVFTLSVLAII 288
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + IF G+
Sbjct: 289 YTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGI--------- 339
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
+ GA + + + + + T E+ + GL P A+ M+F + G P T GF +F
Sbjct: 340 VSGALFLCVGVVYDRLH-TREISAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGEFL 398
Query: 879 IFEKIFETQKI 889
+F +
Sbjct: 399 TLIGVFRANTL 409
>gi|307727839|ref|YP_003911052.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. CCGE1003]
gi|307588364|gb|ADN61761.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. CCGE1003]
Length = 536
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/365 (49%), Positives = 274/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +G+DG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 89 WSPTFDIAWHVGVDGISLWLVALTALTTIIIVIASWESITRRTAQYFGAFLMLSGFMQGV 148
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGM+F++ FEATLIP++++IGTWG +NRSYAA+KFF + +GSL+ML+SM+YLY
Sbjct: 149 FTSLDGMMFFVAFEATLIPLYLLIGTWGHANRSYAAVKFFFVSFLGSLMMLMSMLYLY-S 207
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + Q+ +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 208 QTHSFDLALWRETRFGTMPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 267
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLKLG YGLLRF+LPI P AS++F+ ++ITLSL+++IY SL+A+VQ D+++L+AYS++
Sbjct: 268 --MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTV 325
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ +I GAI+QM+S+ ++S AM + G LY++ KT I +GG+ N
Sbjct: 326 AHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTAAIDEYGGVANT 385
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ ++FNF IG + ++ L+ SAAY+L +
Sbjct: 386 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGAIAASTLVLSAAYTLWMY 445
Query: 584 KNIIF 588
K +IF
Sbjct: 446 KRVIF 450
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 241 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKLGGYGLLRFALPIAPQASHFFAPMMIT 297
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V +I ++++
Sbjct: 298 LSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVS 357
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 358 GAMLLCTG-MLYDRTKTAAIDEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 412
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 32/197 (16%)
Query: 693 KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
K+ + P H W+PDV+ GA+++I +L KL + L++ LP+
Sbjct: 241 KVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KLGGYG-----LLRFALPIAPQASHF 290
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ +++ L++ ++I ++ A+ Q + +R++AYS++AHMGL+ L +FN
Sbjct: 291 FAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTL----------GLFVFNR 340
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCN--KTDELDIFIGLHQRNPWCALIMMIFMF 862
+ + ++ G ++L + KT +D + G+ P A +M+F
Sbjct: 341 IGQAGAIVQMLSYGVVS--GAMLLCTGMLYDRTKTAAIDEYGGVANTMPRFAAFVMLFSM 398
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 399 ANIGLPGTSGFVGEFMV 415
>gi|312116314|ref|YP_004013910.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Rhodomicrobium vannielii ATCC 17100]
gi|311221443|gb|ADP72811.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodomicrobium vannielii ATCC 17100]
Length = 512
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/369 (51%), Positives = 265/369 (71%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+ + W+ I Y++G+DGLSL F+ LT F+ + IL S I ++ EYM AFLIL L
Sbjct: 68 EHRPWLSD-TITYYVGVDGLSLPFVILTTFLMPLTILASWKSITVRVKEYMIAFLILEAL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD +LFY+FFE LIP+FIIIG WGG R YA+ KFFLYTL+GSL MLI+++
Sbjct: 127 MIGVFCALDLVLFYLFFEGGLIPMFIIIGVWGGPRRVYASFKFFLYTLLGSLFMLIAILV 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y ++ + I + + Q WL+ F +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MYGMAGTT-EIPALLKYDFPVNVQAWLWFAFLASFAVKLPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG +RFSLP+FPDAS F+ L+ TL + +IIY SL+A Q D+KKLIA
Sbjct: 246 VVLAAILLKMGGYGFIRFSLPMFPDASVQFAPLMFTLGVAAIIYTSLVAFAQKDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+G+F T+ +QGA+ QMISH ++S A+F+++G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTIGVFSGTEQGVQGAVFQMISHGIVSGALFLAVGVVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ + +P ++ FF++F++AN LPGTSGFIGEF+ +L + N LI SA Y+
Sbjct: 366 LADRMPIYAFFFMVFTMANVGLPGTSGFIGEFLTLLGTFQANTVAAFFACFGLILSAVYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LTLYRRMIF 434
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 18/200 (9%)
Query: 27 YDKPLAITANLK-AFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
YD P+ + A L AFL + K +P+HTWLPD+ +E PT A +++ AA ++ G
Sbjct: 202 YDFPVNVQAWLWFAFLASF---AVKLPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGG 257
Query: 85 FMITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+F ++ + ++F +G + L+ Q D+K++IAYS+++ +G++T+
Sbjct: 258 YGFIRFSLPMFPDASVQFAPLMFTLGVAAIIYTSLVAFAQKDMKKLIAYSSVAHMGFVTI 317
Query: 143 GL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPIT 196
G+ GV ++F +++H LFL+ G ++ + H ++I GGL MPI
Sbjct: 318 GVFSGTEQGVQG---AVFQMISHGIVSGALFLAVG-VVYDRMHTREIAAYGGLADRMPIY 373
Query: 197 CITSLIGLLSLVGAPFFSGF 216
++ ++ VG P SGF
Sbjct: 374 AFFFMVFTMANVGLPGTSGF 393
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 30/267 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S FML I ++YG+ GT E+ ++ + +V A +
Sbjct: 165 ASFKFFLYTLLGSLFMLIAILVMYGMAGTTEIPALLK----YDFPVNVQAWLWFAFLASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ KL + P H W+PD + A T + L I+ ++ I+ LP+
Sbjct: 221 AVKLPMWPVHTWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFIRFSLPMFPDAS 272
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ + ++ L + ++I ++ A Q + K++IAYSS+AHMG + + S +F
Sbjct: 273 VQFAPLMFTLGVAAIIYTSLVAFAQKDMKKLIAYSSVAHMGFVTIGVFSGTEQGVQGAVF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P A M+F
Sbjct: 333 QMISHGI---------VSGALFLAVGVVYDRMH-TREIAAYGGLADRMPIYAFFFMVFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P T GF +F F+ +
Sbjct: 383 ANVGLPGTSGFIGEFLTLLGTFQANTV 409
>gi|417110613|ref|ZP_11963783.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli
CNPAF512]
gi|327188500|gb|EGE55714.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli
CNPAF512]
Length = 503
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/373 (50%), Positives = 275/373 (73%), Gaps = 3/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLI 275
+ ++K W+ I Y +G+DG+S+ F+ LT F+ +L S L I+K+L EYM AFLI
Sbjct: 64 FQMEQKFDWLGT-GIGYHVGVDGISMLFVILTTFLMPFCVLASWLSIEKRLKEYMVAFLI 122
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L ++IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML+
Sbjct: 123 LETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLL 182
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++ +Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+AP
Sbjct: 183 AIMAMYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 241
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LKLG YGL+RFSL +FP AS YF+ L+ LS+I+IIY SL+AM+Q DIK
Sbjct: 242 TAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFALSVIAIIYTSLVAMMQDDIK 301
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+
Sbjct: 302 KLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREIN 361
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I S
Sbjct: 362 AYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILS 421
Query: 576 AAYSLCLSKNIIF 588
AAY+L L + +IF
Sbjct: 422 AAYALWLYRRVIF 434
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ K + L L+ + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALL-AYKFPPALQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFALSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WVAL 412
>gi|389807681|ref|ZP_10204218.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter thiooxydans
LCS2]
gi|388443806|gb|EIL99941.1| NADH:ubiquinone oxidoreductase subunit M [Rhodanobacter thiooxydans
LCS2]
Length = 501
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/382 (48%), Positives = 272/382 (71%), Gaps = 14/382 (3%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
+ +WI + +++ L +DG+S+ I +T F+ +++I + I+ + +YM+ L+L G
Sbjct: 62 QETHVWIATWGVHFTLAVDGISVALILMTTFVGILVIGGAWKVIQNRPHQYMACMLLLEG 121
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L+IG FCA D ++FY FFEA LIP++I+IG WGG R YA +K F+YT GS+ MLI+++
Sbjct: 122 LLIGVFCATDALVFYAFFEAVLIPMYILIGMWGGPRRVYATLKLFIYTFTGSVFMLIALL 181
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
YLY ++ +F++ + L +T EQ WLF F IAFAIK+P+ P+HTWLPDAHVEAPT G
Sbjct: 182 YLYQKAH-TFDLATLAALPLTFKEQAWLFFGFLIAFAIKVPMVPVHTWLPDAHVEAPTGG 240
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SV LAA+MLK+G YG++RF LPI PDA +F+ ++I LSL++IIYI +A+VQ D+KKL+
Sbjct: 241 SVWLAAVMLKIGTYGMVRFILPITPDAGAHFAWIVIVLSLVAIIYIGYVALVQEDMKKLV 300
Query: 459 AYSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLY 506
AYSS+AHMGFVTLGIFM + + +QGA++QMISH +S AMF IG +Y
Sbjct: 301 AYSSVAHMGFVTLGIFMAFMLVREGGNTEMASLGMQGAMVQMISHGFVSGAMFTCIGVMY 360
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++ TR I ++GG+IN++P F F+++F++ANC LPGTSGF+GEFM+IL++ + I +
Sbjct: 361 DRTHTRQIKDYGGVINMMPWFGFFYVLFAMANCGLPGTSGFVGEFMVILASFSASPWIAL 420
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+ LI A Y+L L K +++
Sbjct: 421 FATFTLIIGAGYTLWLVKRVLW 442
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR-MSPLFELSNTALSIILFI 107
K P+HTWLPD+ +E PT S + AA M+ G + + R + P+ + + I+ +
Sbjct: 219 KVPMVPVHTWLPDAHVEAPTGGSVWL-AAVMLKIGTYGMVRFILPITPDAGAHFAWIVIV 277
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------- 151
++ A ++G + ++Q D+K+++AYS+++ +G++T+G+ ++ V
Sbjct: 278 LSLVAIIYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFMAFMLVREGGNTEMASLGMQG 337
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F +F G ++ + H + I++ GG+ MP ++ ++ G P
Sbjct: 338 AMVQMISHGFVSGAMFTCIG-VMYDRTHTRQIKDYGGVINMMPWFGFFYVLFAMANCGLP 396
Query: 212 FFSGFYSK-------DKKKIWIDYFNIYYFLGIDGLSLWFI 245
SGF + WI F + + G +LW +
Sbjct: 397 GTSGFVGEFMVILASFSASPWIALFATFTLIIGAGYTLWLV 437
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 125/285 (43%), Gaps = 27/285 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A +K FI S FML + LY T +L ++ + L + L L +
Sbjct: 161 ATLKLFIYTFTGSVFMLIALLYLYQKAHTFDLATL-AALPLTFKEQAWLFFGFL---IAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A T + L ++ ++ +++ +LP+
Sbjct: 217 AIKVPMVPVHTWLPDAHVEAP--------TGGSVWLAAVMLKIGTYGMVRFILPITPDAG 268
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI----ISIKTSHNN 798
++ I+++L++ ++I A+ Q + K+++AYSS+AHMG + I + ++ N
Sbjct: 269 AHFAWIVIVLSLVAIIYIGYVALVQEDMKKLVAYSSVAHMGFVTLGIFMAFMLVREGGNT 328
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+ + +I++ F F I ++ + T T ++ + G+ PW +
Sbjct: 329 EMASLGMQGAMVQMISHGFVSGAMFTCIGVMYDRT--HTRQIKDYGGVINMMPWFGFFYV 386
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
+F + G P T GF +F + F W+ L +IGA
Sbjct: 387 LFAMANCGLPGTSGFVGEFMVILASFSASP-WIALFATFTLIIGA 430
>gi|255263730|ref|ZP_05343072.1| NADH-quinone oxidoreductase subunit m [Thalassiobium sp. R2A62]
gi|255106065|gb|EET48739.1| NADH-quinone oxidoreductase subunit m [Thalassiobium sp. R2A62]
Length = 513
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 302/440 (68%), Gaps = 19/440 (4%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA--PFFSGFYSKDKKKIW 225
L+AG + + ++ + + + + T T L+ L +++G P +GF +++ W
Sbjct: 14 LAAGILALFLRGDDEAAQRNAKWVALAATATTFLVSL-AILGQFDPSDTGFQMVEQRD-W 71
Query: 226 IDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFC 285
+ + Y +G+DG+S+ F+ LT F+ ++I D+K ++ EYM AFLIL L++G FC
Sbjct: 72 L--LGMQYKMGVDGISVLFVMLTTFLMPLVIASCWDVKHRVKEYMIAFLILETLMLGVFC 129
Query: 286 ALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS- 344
ALD +LFY+FFEA LIP+F+IIG WGG+NR YA+ KFFLYT +GS+LML++M+ ++ +
Sbjct: 130 ALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMVSMFADAG 189
Query: 345 --------NKSFNILSWHQLSITKIE--QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
N +F +++ L + I Q ++I FF +FA+K+P+WP+HTWLPDAHV+A
Sbjct: 190 TTDIVTLLNHNFGSETFNVLGVQVIGGMQTMMWIAFFASFAVKMPMWPVHTWLPDAHVQA 249
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSV+LAAI+LK+G YG LRFSLP+FP AS + L++ +S I+I Y SL+A+VQ D+
Sbjct: 250 PTAGSVVLAAILLKMGGYGFLRFSLPMFPVASDLLAPLVLWMSAIAIAYTSLVALVQQDM 309
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KKLIAYSS+AHMG+VT+GIF + I GAI QMISH IS A+F+ +G +Y++M TR I
Sbjct: 310 KKLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIYDRMHTREI 369
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++ + N + V+ ++ +I
Sbjct: 370 DAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLMGVFQVNTWVAVIATSGVIL 429
Query: 575 SAAYSLCLSKNIIFVLGQMI 594
SA+Y L L + + V+G +I
Sbjct: 430 SASYGLWLYRRV--VMGDLI 447
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F +++ L+ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVASDLLAPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 291 MSAIAIAYTSLVALVQQDMKKLIAYSSVAHMGYVTMGIFAANQQGIDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 405
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVSMFADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ FNV+ + I + + + + K+ + P H W+PD +
Sbjct: 189 GTTDIVTLLNHNFGSETFNVLGVQVIG-GMQTMMWIAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + L PLV+ W + I A SL+
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVASDLLAPLVL-WMSAIAI-AYTSLV--- 302
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 303 --ALVQQDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGIDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P ALI M F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLM 410
Query: 882 KIFE 885
+F+
Sbjct: 411 GVFQ 414
>gi|146341101|ref|YP_001206149.1| NADH dehydrogenase subunit M [Bradyrhizobium sp. ORS 278]
gi|146193907|emb|CAL77924.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. ORS 278]
Length = 502
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/369 (51%), Positives = 270/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+KK W+ I Y +G+DG+SL F+ LT A + II +K +L EYM AFLIL L
Sbjct: 68 EKKNWLAA-GISYHMGVDGISLPFVILTTALMPFCIIASWKSVKNRLREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYWNAGTT-DIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q DIKKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SAAY+
Sbjct: 366 LVNRMPVYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPVYALVFMVFTMANVGLPGTSGFVGE 396
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 32/264 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 280 -WT-----LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGT--------MQ 325
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFM 861
G+F +I++ I+ G + L ++ T E+ + GL R P AL+ M+F
Sbjct: 326 GVAGGVFQMISH--GIVS--GALFLCVGVVYDRMHTREIAAYGGLVNRMPVYALVFMVFT 381
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 382 MANVGLPGTSGFVGEFMTLLGTFK 405
>gi|374263786|ref|ZP_09622333.1| NADH dehydrogenase I, M subunit [Legionella drancourtii LLAP12]
gi|363535908|gb|EHL29355.1| NADH dehydrogenase I, M subunit [Legionella drancourtii LLAP12]
Length = 419
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/361 (52%), Positives = 271/361 (75%), Gaps = 13/361 (3%)
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+SL I L+ F L++IL + D I ++++Y++AFLI+ GL++G F ALD +LFYIF+EA
Sbjct: 1 MSLLLIVLSIFTNLVVILATWDSITNRVSQYLAAFLIMQGLLVGVFSALDAILFYIFWEA 60
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
TLIP+++IIG WG NR YAAIKFFLYT +GS+LML S +Y+ YI+ +FNI + + + +
Sbjct: 61 TLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLASFLYIGYIAG-TFNIEALYAIKL 119
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q +FI FF+ FAIKIP++P+HTWLPDAH EAP GS++LAAI+LKLG YG +RFS
Sbjct: 120 NMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPAGGSIVLAAILLKLGAYGFIRFS 179
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LPI PDA ++ ++I LSL++++YI+L+A++Q D+K+LIAYSSI+HMGFVTLG F +
Sbjct: 180 LPIVPDACSKYAGVMIALSLVAVVYIALVAIIQKDMKRLIAYSSISHMGFVTLGCFAIFA 239
Query: 479 IS-----------IQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHF 527
I+ ++GAI+ MISHA +SSAMF +GF+Y++M TR + +FGGI+N +P F
Sbjct: 240 IAKQTGLSNAGLILEGAIVVMISHAFVSSAMFAGVGFIYDRMHTRRLVDFGGIVNTMPIF 299
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
+ FF++F +AN LPGTSGF+GEFM+I+ ++K F I ++ LI +AAY+L + K +I
Sbjct: 300 ASFFMLFCMANAGLPGTSGFVGEFMVIVGSIKAGFWITFWAASTLITAAAYNLWMYKRVI 359
Query: 588 F 588
F
Sbjct: 360 F 360
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 34/267 (12%)
Query: 9 FLGWEIVGMASYLLIGF---------WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTW 59
FLG ++ +AS+L IG+ Y L +TA F+ +G K FP+HTW
Sbjct: 89 FLG-SVLMLASFLYIGYIAGTFNIEALYAIKLNMTAQTLIFIAFFLGFAIKIPMFPVHTW 147
Query: 60 LPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGL 117
LPD+ +++ AA ++ G + R S P+ + + +++ + + ++ L
Sbjct: 148 LPDAHTEAPAGGSIVLAAILLKLGAYGFIRFSLPIVPDACSKYAGVMIALSLVAVVYIAL 207
Query: 118 LGIIQNDIKRIIAYSTLSQLGYMTVGL----------GVSAYTV----SIFHLMTHAFFK 163
+ IIQ D+KR+IAYS++S +G++T+G G+S + +I +++HAF
Sbjct: 208 VAIIQKDMKRLIAYSSISHMGFVTLGCFAIFAIAKQTGLSNAGLILEGAIVVMISHAFVS 267
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK---- 219
+ +F G I M H + + + GG+ MPI ++ ++ G P SGF +
Sbjct: 268 SAMFAGVGFIYDRM-HTRRLVDFGGIVNTMPIFASFFMLFCMANAGLPGTSGFVGEFMVI 326
Query: 220 ---DKKKIWIDYFNIYYFLGIDGLSLW 243
K WI ++ + +LW
Sbjct: 327 VGSIKAGFWITFWAASTLITAAAYNLW 353
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 36/294 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L I+ L+ + L + I N ++ AAIK+F+ L S ML + I GT
Sbjct: 53 LFYIFWEATLIPMYLIIGIWGSDNRVY---AAIKFFLYTFLGSVLMLASFLYIGYIAGTF 109
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITL 716
+++++ IKLN +++ ++ L G + K+ + P H W+PD + G SI++
Sbjct: 110 NIEALY-AIKLNMTAQTLIFIAFFL---GFAIKIPMFPVHTWLPDAHTEAPAGGSIVLAA 165
Query: 717 LLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKR 772
+L KL + I+ LP+V + + +++ L++ +++ + AI Q + KR
Sbjct: 166 ILL---KLGAYG-----FIRFSLPIVPDACSKYAGVMIALSLVAVVYIALVAIIQKDMKR 217
Query: 773 MIAYSSIAHMG---LMLFSIISIKT----SHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
+IAYSSI+HMG L F+I +I S+ LI+ + + +I++ F F
Sbjct: 218 LIAYSSISHMGFVTLGCFAIFAIAKQTGLSNAGLIL----EGAIVVMISHAFVSSAMFAG 273
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ + + T L F G+ P A M+F + AG P T GF +F +
Sbjct: 274 VGFIYDRM--HTRRLVDFGGIVNTMPIFASFFMLFCMANAGLPGTSGFVGEFMV 325
>gi|304321904|ref|YP_003855547.1| NADH dehydrogenase subunit M [Parvularcula bermudensis HTCC2503]
gi|303300806|gb|ADM10405.1| NADH dehydrogenase subunit M [Parvularcula bermudensis HTCC2503]
Length = 553
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/371 (50%), Positives = 270/371 (72%), Gaps = 13/371 (3%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ LT FI I IL I ++AEYM AFL+L LIIG FCALD
Sbjct: 106 GITYKMGVDGISILFVLLTTFIMPIAILAGWRSISSRVAEYMVAFLVLETLIIGVFCALD 165
Query: 289 GMLFYIFFEATLIPIFIIIGTWGG-----------SNRSYAAIKFFLYTLMGSLLMLISM 337
+LFY+FFEA+LIP+F+IIG WG NR YAA KFFLYTL GSLL+L+++
Sbjct: 166 LLLFYVFFEASLIPMFLIIGIWGSKGERSIFGLTVQNRIYAAFKFFLYTLFGSLLLLLAL 225
Query: 338 IYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
IY+Y + + ++++ Q+S Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT
Sbjct: 226 IYMY-LQTGTTDVVALQQVSFGDGAQKWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTA 284
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GS++LAAI+LK+G YG LRFSLP+FPDAS YF+ L+ TLS+I+I+Y SL+A Q D+KKL
Sbjct: 285 GSIVLAAILLKMGGYGFLRFSLPMFPDASLYFAPLVFTLSVIAILYTSLVAFAQEDMKKL 344
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
IAYSS+AHMGFVT+GIF +T ++GA+ QM+SH IS A+F+ +G +Y+++ TR IS +
Sbjct: 345 IAYSSVAHMGFVTMGIFTMTDQGLEGALFQMLSHGFISGALFLCVGIVYDRLHTREISAY 404
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAA 577
GG++ + F+ FF++FS+AN LPG SGF+GE + ++ A + N + L++ ++ +A+
Sbjct: 405 GGLVGHMKWFAFFFLLFSMANVGLPGLSGFVGEILTMVGAFQVNTWVAALSALGMVLAAS 464
Query: 578 YSLCLSKNIIF 588
Y L L + + F
Sbjct: 465 YGLRLYREVAF 475
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F ++ + ++F
Sbjct: 264 KMPMWPVHTWLPDAHVQAPT-AGSIVLAAILLKMGGYGFLRFSLPMFPDASLYFAPLVFT 322
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ Q D+K++IAYS+++ +G++T+G + ++F +++H F
Sbjct: 323 LSVIAILYTSLVAFAQEDMKKLIAYSSVAHMGFVTMGIFTMTDQGLEGALFQMLSHGFIS 382
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I+ + H ++I GGL +M L+ ++ VG P SGF +
Sbjct: 383 GALFLCVG-IVYDRLHTREISAYGGLVGHMKWFAFFFLLFSMANVGLPGLSGFVGE 437
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 133/300 (44%), Gaps = 39/300 (13%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
+N I+ AA K+F+ + S +L + +Y TGT +V+ L ++ A
Sbjct: 201 QNRIY---AAFKFFLYTLFGSLLLLLALIYMYLQTGTT------DVVALQQVSFGDGAQK 251
Query: 683 LLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIK 736
L + SF K+ + P H W+PD + A T + L I+ ++ ++
Sbjct: 252 WLWLAFFASFAVKMPMWPVHTWLPDAHVQAP--------TAGSIVLAAILLKMGGYGFLR 303
Query: 737 CLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
LP+ + + ++ L++ +++ ++ A Q + K++IAYSS+AHMG + I ++
Sbjct: 304 FSLPMFPDASLYFAPLVFTLSVIAILYTSLVAFAQEDMKKLIAYSSVAHMGFVTMGIFTM 363
Query: 793 KTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPW 852
+ LF ++++ F I GA + + + + + T E+ + GL W
Sbjct: 364 TD--------QGLEGALFQMLSHGF-ISGALFLCVGIVYDRLH-TREISAYGGLVGHMKW 413
Query: 853 CALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGG-RIIKD 911
A ++F + G P GF + F+ W+ L + ++ A G R+ ++
Sbjct: 414 FAFFFLLFSMANVGLPGLSGFVGEILTMVGAFQVNT-WVAALSALGMVLAASYGLRLYRE 472
>gi|407768992|ref|ZP_11116369.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira xiamenensis
M-5 = DSM 17429]
gi|407287912|gb|EKF13391.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira xiamenensis
M-5 = DSM 17429]
Length = 505
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/370 (50%), Positives = 268/370 (72%), Gaps = 4/370 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ NI Y +G+DG+S+ F+ L F+T I IL + + I+K++ EYM AFLIL +
Sbjct: 68 EKADWMPGLNISYHMGVDGISMLFVLLATFLTPICILSAWEAIQKRVKEYMIAFLILETM 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALDG+LFY+FFE LIP+FIIIG WGG R YAA K FLYTL+GS+LML++++
Sbjct: 128 MVGMFSALDGLLFYLFFEGVLIPMFIIIGVWGGQRRVYAAFKLFLYTLLGSVLMLVALLA 187
Query: 340 LYYISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
+Y+ + + L H S Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT G
Sbjct: 188 MYFEAGTTDIPTLMAHGFSYNM--QLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAG 245
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILA ++LK+G YG LRFSLP+ P AS F+ L+ TLS+++IIY SL+A+ Q D+KKLI
Sbjct: 246 SVILAGVLLKMGGYGFLRFSLPMMPLASETFAPLVFTLSIVAIIYTSLVALAQQDMKKLI 305
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS+AHMG VT+G F + I+G+I QM+SH ++S A+F+ +G +Y++M TR I +G
Sbjct: 306 AYSSVAHMGIVTIGAFTFNQHGIEGSIFQMLSHGVVSGALFLCVGVVYDRMHTREIDAYG 365
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+++ +P ++V F+ F++A+ LPGT GF+GE + +L A + N + +T LI AAY
Sbjct: 366 GLVHRMPGYAVIFMFFTMASVGLPGTGGFVGEILALLGAFEANTWVAFFAATGLILGAAY 425
Query: 579 SLCLSKNIIF 588
+L L + I+F
Sbjct: 426 ALYLYRRIVF 435
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 16/180 (8%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ L++ + ++F
Sbjct: 224 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSLPMMPLASETFAPLVFT 282
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV-------SIFHLMTH 159
+I A + L+ + Q D+K++IAYS+++ +G +T+G A+T SIF +++H
Sbjct: 283 LSIVAIIYTSLVALAQQDMKKLIAYSSVAHMGIVTIG----AFTFNQHGIEGSIFQMLSH 338
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + + ++ VG P GF +
Sbjct: 339 GVVSGALFLCVG-VVYDRMHTREIDAYGGLVHRMPGYAVIFMFFTMASVGLPGTGGFVGE 397
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 113/265 (42%), Gaps = 28/265 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K F+ +L S ML + +Y GT ++ ++ + + ++ L
Sbjct: 166 AAFKLFLYTLLGSVLMLVALLAMYFEAGTTDIPTLMA----HGFSYNMQLWLWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + + L + PLV
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFSLPMMPLASETFAPLVF 281
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L+I ++I ++ A+ Q + K++IAYSS+AHMG++ + IF
Sbjct: 282 T-------LSIVAIIYTSLVALAQQDMKKLIAYSSVAHMGIVTIGAFTFNQHGIEGSIFQ 334
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+ + GA + + + + + T E+D + GL R P A+I M F +
Sbjct: 335 MLSHGV---------VSGALFLCVGVVYDRMH-TREIDAYGGLVHRMPGYAVIFMFFTMA 384
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQK 888
G P T GF + FE
Sbjct: 385 SVGLPGTGGFVGEILALLGAFEANT 409
>gi|15888611|ref|NP_354292.1| NADH dehydrogenase I chain M [Agrobacterium fabrum str. C58]
gi|15156333|gb|AAK87077.1| NADH dehydrogenase I chain M [Agrobacterium fabrum str. C58]
Length = 503
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W Y+ LG+DG+S+ F+ LT F+ +L S + I+K++ EYM AFL+L +
Sbjct: 68 EKHAWFGKIAAYH-LGVDGISMLFVILTTFLMPFCVLASWNSIEKRVKEYMIAFLLLEVV 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFEATLIP+FIIIG WGG +R YA+ KFFLYTL+GS+L +++++
Sbjct: 127 MVGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLTMLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ S + ++ + Q WL++ F AF++K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQSGTT-DMTELLKYGFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA +MLKLG YG +RFSL +FP AS YF+ + TLS+++IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QGAI QM+SH ++S A+F+ +G +Y+++ TR IS +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREISAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F+IF++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFLTLIGVFRANTLVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V +IF +++H
Sbjct: 282 LSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + +I ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 132/311 (42%), Gaps = 26/311 (8%)
Query: 586 IIFVLGQMIMIS-----GNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F+L +++M+ L ++ L+ + + + + K+ +++S K+F+ +
Sbjct: 118 IAFLLLEVVMVGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASY---KFFLYTL 174
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S + I +Y +GT ++ + + L S K+ + P H
Sbjct: 175 LGSVLTMLAIMAMYWQSGTTDMTELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVH 230
Query: 701 MWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLI 758
W+PD + Q + +L KL + I L + PL ++ + L++ ++I
Sbjct: 231 TWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSL--SMFPLASDYFAPFVFTLSVLAII 288
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + IF G+
Sbjct: 289 YTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGI--------- 339
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
+ GA + + + + + T E+ + GL P A+ MIF + G P T GF +F
Sbjct: 340 VSGALFLCVGVVYDRLH-TREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFL 398
Query: 879 IFEKIFETQKI 889
+F +
Sbjct: 399 TLIGVFRANTL 409
>gi|440226248|ref|YP_007333339.1| NADH-quinone oxidoreductase subunit m [Rhizobium tropici CIAT 899]
gi|440037759|gb|AGB70793.1| NADH-quinone oxidoreductase subunit m [Rhizobium tropici CIAT 899]
Length = 503
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 275/369 (74%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+S+ F+ L+ F+ +L S L ++K+L +YM AFL+L +
Sbjct: 68 EKHEWLTG-GISYHMGVDGISMLFVILSTFLMPFCVLASWLSVEKRLKDYMIAFLVLETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFTSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DIPTLLAYKFPPQLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LKLG YGL+RFSL +FP+AS YF+ L+ LS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGILLKLGGYGLIRFSLGMFPNASEYFAPLVFALSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANQQGVQGAIFQMLSHGIVSGALFLCVGVIYDRTHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRANTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 100/176 (56%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGLIRFSLGMFPNASEYFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANQQGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 339 IVSGALFLCVG-VIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 133/302 (44%), Gaps = 36/302 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
++ ++ + + L + K+ + P H W+PD + A +++L+
Sbjct: 195 DIPTLLAYKFPPQLQTWLW----LAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKR 772
I+ +L LI+ L + N + ++ L++ ++I ++ A+ Q + K+
Sbjct: 251 --------ILLKLGGYGLIRFSLGMFPNASEYFAPLVFALSVIAIIYTSLVAMMQDDIKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKN 831
+IAYSS+AHMG + I + IF G+ + GA F + ++ +
Sbjct: 303 LIAYSSVAHMGYVTMGIFAANQQGVQGAIFQMLSHGI---------VSGALFLCVGVIYD 353
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWL 891
T T E+ + GL P A+ MM+F + G P T GF +F +F W+
Sbjct: 354 RT--HTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRANT-WV 410
Query: 892 LL 893
L
Sbjct: 411 AL 412
>gi|385204676|ref|ZP_10031546.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. Ch1-1]
gi|385184567|gb|EIF33841.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. Ch1-1]
Length = 518
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 275/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +G+DG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 69 WSPTFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFLMLSGFMQGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGMLF+I FEATLIP++++IGTWG +NR+YAA+KFF + +GSL+ML+SM+YLY
Sbjct: 129 FASLDGMLFFISFEATLIPLYLLIGTWGQTNRTYAAVKFFFVSFLGSLMMLMSMLYLY-S 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + Q+ +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 188 QTHSFDLALWRETHLGTWPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLKLG YGLLRF+LPI P AS++F+ ++ITLSL+++IY SL+A+VQ D+++L+AYS++
Sbjct: 248 --MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ +I GAI+QM+S+ ++S AM + G LY++ KT I+ +GG+ N
Sbjct: 306 AHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTASIAEYGGVANT 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ ++FNF IG + ++ LI SAAY+L +
Sbjct: 366 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGAIAASTLILSAAYTLWMY 425
Query: 584 KNIIF 588
K +IF
Sbjct: 426 KRVIF 430
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKLGGYGLLRFALPIAPQASHFFAPMMIT 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V +I ++++
Sbjct: 278 LSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 338 GAMLLCTG-MLYDRTKTASIAEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 392
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 693 KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
K+ + P H W+PDV+ GA+++I +L KL + L++ LP+
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KLGGYG-----LLRFALPIAPQASHF 270
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ +++ L++ ++I ++ A+ Q + +R++AYS++AHMGL+ L +FN
Sbjct: 271 FAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTL----------GLFVFNR 320
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMF 862
+ + ++ G ++L ++T I + G+ P A +M+F
Sbjct: 321 IGQAGAIVQMLSYGVVS--GAMLLCTGMLYDRTKTASIAEYGGVANTMPRFAAFVMLFSM 378
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 379 ANIGLPGTSGFVGEFMV 395
>gi|91778469|ref|YP_553677.1| proton-translocating NADH-quinoneoxidoreductase subunit M
[Burkholderia xenovorans LB400]
gi|91691129|gb|ABE34327.1| NADH dehydrogenase subunit M [Burkholderia xenovorans LB400]
Length = 518
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/365 (50%), Positives = 275/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +G+DG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 69 WSPTFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFLMLSGFMQGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGMLF+I FEATLIP++++IGTWG SNR+YAA+KFF + +GSL+ML+SM+YLY
Sbjct: 129 FASLDGMLFFISFEATLIPLYLLIGTWGQSNRTYAAVKFFFVSFLGSLMMLMSMLYLY-S 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + Q+ +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 188 QTHSFDLALWRETHLGTWPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLKLG YGLLRF+LPI P AS++F+ ++ITLSL+++IY SL+A+VQ D+++L+AYS++
Sbjct: 248 --MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ +I GAI+QM+S+ ++S AM + G LY++ KT I+ +GG+ N
Sbjct: 306 AHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTASIAEYGGVANT 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ ++FNF IG + ++ LI SAAY+L +
Sbjct: 366 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGSIAASTLILSAAYTLWMY 425
Query: 584 KNIIF 588
K +IF
Sbjct: 426 KRVIF 430
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKLGGYGLLRFALPIAPQASHFFAPMMIT 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V +I ++++
Sbjct: 278 LSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 338 GAMLLCTG-MLYDRTKTASIAEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 392
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 693 KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
K+ + P H W+PDV+ GA+++I +L KL + L++ LP+
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KLGGYG-----LLRFALPIAPQASHF 270
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ +++ L++ ++I ++ A+ Q + +R++AYS++AHMGL+ L +FN
Sbjct: 271 FAPMMITLSLVAVIYASLLALVQTDMRRLLAYSTVAHMGLVTL----------GLFVFNR 320
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMF 862
+ + ++ G ++L ++T I + G+ P A +M+F
Sbjct: 321 IGQAGAIVQMLSYGVVS--GAMLLCTGMLYDRTKTASIAEYGGVANTMPRFAAFVMLFSM 378
Query: 863 SLAGFPPTIGFYAKFFI 879
+ G P T GF +F +
Sbjct: 379 ANIGLPGTSGFVGEFMV 395
>gi|408785991|ref|ZP_11197731.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium lupini HPC(L)]
gi|424910142|ref|ZP_18333519.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846173|gb|EJA98695.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|408488180|gb|EKJ96494.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium lupini HPC(L)]
Length = 503
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/357 (51%), Positives = 268/357 (75%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+S+ F+ LT F+ +L S D ++K++ EYM AFL+L ++IG F ALD +L
Sbjct: 79 YHLGVDGISMLFVILTTFLMPFCVLASWDSVEKRIKEYMIAFLLLEVVMIGVFVALDTVL 138
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFEATLIP+FIIIG WGG +R YA+ KFFLYTL+GS+L +++++ +Y+ + + ++
Sbjct: 139 FYVFFEATLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLTMLAIMAMYWQAGTT-DMT 197
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q WL++ F AF++K+P+WP+HTWLPDAHV+APT GSVILA +MLKLG
Sbjct: 198 ELLKYGFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGG 257
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSL +FP AS YF+ + TLS+++IIY SL+AM+Q DIKKLIAYSS+AHMG+VT+
Sbjct: 258 YGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTM 317
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF +QGAI QM+SH ++S A+F+ +G +Y+++ TR I+ +GG++N +P ++V F
Sbjct: 318 GIFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIAAYGGLVNNMPKYAVAF 377
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+IF++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+L L + +IF
Sbjct: 378 MIFTMANVGLPGTSGFIGEFLTLVGVFRANTLVALFAATGVILSAAYALWLYRRVIF 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V +IF +++H
Sbjct: 282 LSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + +I ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRLHTREIAAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGF 393
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 131/311 (42%), Gaps = 26/311 (8%)
Query: 586 IIFVLGQMIMIS-----GNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F+L +++MI L ++ L+ + + + + K+ +++S K+F+ +
Sbjct: 118 IAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASY---KFFLYTL 174
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S + I +Y GT ++ + + L S K+ + P H
Sbjct: 175 LGSVLTMLAIMAMYWQAGTTDMTELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVH 230
Query: 701 MWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLI 758
W+PD + Q + +L KL + I L + PL ++ + L++ ++I
Sbjct: 231 TWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSL--SMFPLASDYFAPFVFTLSVLAII 288
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + IF G+
Sbjct: 289 YTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGI--------- 339
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
+ GA + + + + + T E+ + GL P A+ MIF + G P T GF +F
Sbjct: 340 VSGALFLCVGVVYDRLH-TREIAAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFIGEFL 398
Query: 879 IFEKIFETQKI 889
+F +
Sbjct: 399 TLVGVFRANTL 409
>gi|154705922|ref|YP_001423969.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii Dugway
5J108-111]
gi|154355208|gb|ABS76670.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii Dugway
5J108-111]
Length = 506
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 270/377 (71%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI I Y LG+DG+S+ I LT F TL+++L S +KK++ Y+SAFL++ G +IG
Sbjct: 72 WISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFLVMQGAVIGV 131
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD MLFY F+EA LIP++I IG WG RSYAAIKFFLYT GS L+L++++YL +
Sbjct: 132 FSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLLVALLYLR-M 190
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +++L ++ QI +F+ F AFAIK+P+WP+HTWLPDAH EAP GSV+LA
Sbjct: 191 HSDSFYIPDYYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLA 250
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
A+MLKLG YG LRFSLPI PDAS L+I LSLI+I+YI IA+ Q D+KKLIAYSS+
Sbjct: 251 ALMLKLGGYGFLRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSV 310
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG FM+ +S++GA++QMISHA + AMF++ G LY Q+ +
Sbjct: 311 AHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFGVLYEQIHS 370
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I NFGGI +P+F+ FF++F+++N LPGTSGF+GEFM++LS K +F + L ++
Sbjct: 371 RYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTFLAAST 430
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ AAY+L + K + +
Sbjct: 431 LVIGAAYTLWMYKRVFY 447
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 27/228 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y +++T + FL K +PLHTWLPD+ E P S ++ AA M+ G
Sbjct: 200 YYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVL-AALMLKLGG 258
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L +++ + I ++G + I Q D+K++IAYS+++ +G++T+
Sbjct: 259 YGFLRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGFVTL 318
Query: 143 GLGVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
G + + V ++ +++HAF +FL+ G ++ H++ I N G
Sbjct: 319 GAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFG-VLYEQIHSRYIYNFG 377
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFY-------SKDKKKIWIDY 228
G+ K MP ++ +S VG P SGF S K W+ +
Sbjct: 378 GIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTF 425
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 25/244 (10%)
Query: 673 NINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYR 732
+++ +V L L + + K+ + P H W+PD + A + +++L+ L L + Y
Sbjct: 204 HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLAA---LMLKLGGYG 260
Query: 733 LLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG----- 783
L + LP+V + + +++ L++ +++ AI Q + K++IAYSS+AHMG
Sbjct: 261 FL-RFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGFVTLG 319
Query: 784 -LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF---AILGAFGVIILLKNNTCNKTDE 839
M+F I++ + + S + + +I++ F A+ AFGV+ +
Sbjct: 320 AFMVFFIVAHTGDRAD--AYLSLEGAMVQMISHAFGAGAMFLAFGVL-----YEQIHSRY 372
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCS 899
+ F G+ + P+ A M+F S G P T GF +F + F+ W+ L
Sbjct: 373 IYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKA-SFWVTFLAASTL 431
Query: 900 LIGA 903
+IGA
Sbjct: 432 VIGA 435
>gi|222085589|ref|YP_002544119.1| NADH dehydrogenase subunit M [Agrobacterium radiobacter K84]
gi|221723037|gb|ACM26193.1| NADH-ubiquinone oxidoreductase chain M protein [Agrobacterium
radiobacter K84]
Length = 512
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 275/369 (74%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ L+ F+ +L S L ++K+L +YM AFL+L +
Sbjct: 77 EKHGWLGT-GISYHLGVDGISMLFVILSTFLMPFCVLASWLSVEKRLKDYMIAFLVLETM 135
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 136 MIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 195
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 196 MYWQAGTT-DIPALLAYKFPPHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 254
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LKLG YGL+RFSL +FP+AS YF+ L+ +S+I+IIY SL+A++Q DIKKLIA
Sbjct: 255 VILAGILLKLGGYGLIRFSLGMFPNASEYFAPLVFAMSVIAIIYTSLVALMQEDIKKLIA 314
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 315 YSSVAHMGYVTMGIFAANQQGVQGAIFQMLSHGIVSGALFLCVGVIYDRTHTREIAAYGG 374
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 375 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYA 434
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 435 LWLYRRVIF 443
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 100/176 (56%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F ++ + ++F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGLIRFSLGMFPNASEYFAPLVFA 290
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q DIK++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 291 MSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGYVTMGIFAANQQGVQG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 348 IVSGALFLCVG-VIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 402
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 36/302 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 147 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 203
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
++ ++ K + L L+ + K+ + P H W+PD + A +++L+
Sbjct: 204 DIPALL-AYKFPPHMQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 259
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKR 772
I+ +L LI+ L + N + ++ +++ ++I ++ A+ Q + K+
Sbjct: 260 --------ILLKLGGYGLIRFSLGMFPNASEYFAPLVFAMSVIAIIYTSLVALMQEDIKK 311
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKN 831
+IAYSS+AHMG + I + IF G+ + GA F + ++ +
Sbjct: 312 LIAYSSVAHMGYVTMGIFAANQQGVQGAIFQMLSHGI---------VSGALFLCVGVIYD 362
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWL 891
T T E+ + GL P A+ MM+F + G P T GF +F +F W+
Sbjct: 363 RT--HTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WV 419
Query: 892 LL 893
L
Sbjct: 420 AL 421
>gi|115524542|ref|YP_781453.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris BisA53]
gi|115518489|gb|ABJ06473.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodopseudomonas palustris BisA53]
Length = 505
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 271/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT + I+ S + I+ ++ EYM AFLIL L
Sbjct: 72 EKAPWLAA-GIGYHMGVDGISLPFVILTTALMPFCIIASWNSIQTRVREYMMAFLILETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA KFFLYTL+GS+LML++++
Sbjct: 131 MIGTFAALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYATFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++ + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LY-LNAGTTDIPTLMNTAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFSLP+FP AS F+ LI TLS+I+I+Y SL+A++Q DIKKLIA
Sbjct: 250 VVLAAIMLKMGGYGFLRFSLPMFPLASQDFAPLIFTLSVIAIVYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G++ QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGTTQGVAGSVFQMISHGIVSGALFLCVGVIYDRMHTREIAAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEF+ ++ K N + S +I SAAY+
Sbjct: 370 LVNRMPLYALVFMVFTMANVGLPGTSGFVGEFLTLIGTFKVNIPTATVASLGVILSAAYA 429
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 430 LWLYRKVVF 438
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA M+ G + R S P+F L++ + ++F
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGGYGFLRFSLPMFPLASQDFAPLIFT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ S+F +++H
Sbjct: 286 LSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAG---SVFQMISHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-VIYDRMHTREIAAYGGLVNRMPLYALVFMVFTMANVGLPGTSGFVGE 400
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A K+F+ +L S ML I LY GT ++ ++ N N+ + L
Sbjct: 169 ATFKFFLYTLLGSVLMLLAIMALYLNAGTTDIPTLMNTAVPRNLQT----WAWLAFFASF 224
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 225 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAIMLKMGGYGFLRFSLPMFPLAS 276
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I + T +F
Sbjct: 277 QDFAPLIFTLSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAGSVF 336
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P AL+ M+F
Sbjct: 337 QMISHGI---------VSGALFLCVGVIYDRMH-TREIAAYGGLVNRMPLYALVFMVFTM 386
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 387 ANVGLPGTSGFVGEFLTLIGTFK 409
>gi|325292646|ref|YP_004278510.1| NADH dehydrogenase I subunit M [Agrobacterium sp. H13-3]
gi|325060499|gb|ADY64190.1| NADH dehydrogenase I chain M [Agrobacterium sp. H13-3]
Length = 503
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/394 (48%), Positives = 280/394 (71%), Gaps = 3/394 (0%)
Query: 196 TCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
T T L+ L +G + + +K W Y+ LG+DG+S+ F+ LT F+
Sbjct: 43 TVFTFLVSLFVWIGFDNSNPGFQMVEKHAWFGNIAAYH-LGVDGISMLFVILTTFLMPFC 101
Query: 256 ILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
+L S ++K++ EYM AFL+L ++IG F ALD +LFY+FFEATLIP+FIIIG WGG +
Sbjct: 102 VLASWQSVEKRIKEYMIAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKD 161
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAF 374
R YA+ KFFLYTL+GS+L +++++ +Y+ S + ++ + Q WL++ F AF
Sbjct: 162 RVYASYKFFLYTLLGSVLTMLAIMAMYWQSGTT-DMTELLKYGFPAGMQTWLWLACFAAF 220
Query: 375 AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLII 434
++K+P+WP+HTWLPDAHV+APT GSVILA +MLKLG YG +RFSL +FP AS YF+ +
Sbjct: 221 SVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVF 280
Query: 435 TLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALI 494
TLS+++IIY SL+AM+Q DIKKLIAYSS+AHMG+VT+GIF +QGAI QM+SH ++
Sbjct: 281 TLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIV 340
Query: 495 SSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
S A+F+ +G +Y+++ TR IS +GG++N +P ++V F+IF++AN LPGTSGF+GEF+ +
Sbjct: 341 SGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFLTL 400
Query: 555 LSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ + N + + +T +I SAAY+L L + +IF
Sbjct: 401 IGVFRANTLVALFAATGVILSAAYALWLYRRVIF 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V +IF +++H
Sbjct: 282 LSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + +I ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 26/311 (8%)
Query: 586 IIFVLGQMIMIS-----GNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F+L +++MI L ++ L+ + + + + K+ +++S K+F+ +
Sbjct: 118 IAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASY---KFFLYTL 174
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S + I +Y +GT ++ + + L S K+ + P H
Sbjct: 175 LGSVLTMLAIMAMYWQSGTTDMTELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVH 230
Query: 701 MWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLI 758
W+PD + Q + +L KL + I L + PL ++ + L++ ++I
Sbjct: 231 TWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSL--SMFPLASDYFAPFVFTLSVLAII 288
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + IF G+
Sbjct: 289 YTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGI--------- 339
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
+ GA + + + + + T E+ + GL P A+ MIF + G P T GF +F
Sbjct: 340 VSGALFLCVGVVYDRLH-TREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFL 398
Query: 879 IFEKIFETQKI 889
+F +
Sbjct: 399 TLIGVFRANTL 409
>gi|418406799|ref|ZP_12980118.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium tumefaciens
5A]
gi|358007292|gb|EHJ99615.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium tumefaciens
5A]
Length = 503
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/394 (48%), Positives = 280/394 (71%), Gaps = 3/394 (0%)
Query: 196 TCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
T T L+ L +G + + +K W Y+ LG+DG+S+ F+ LT F+
Sbjct: 43 TVFTFLVSLFVWIGFDNSNPGFQMVEKHAWFGNIAAYH-LGVDGISMLFVILTTFLMPFC 101
Query: 256 ILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
+L S ++K++ EYM AFL+L ++IG F ALD +LFY+FFEATLIP+FIIIG WGG +
Sbjct: 102 VLASWQSVEKRIKEYMIAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKD 161
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAF 374
R YA+ KFFLYTL+GS+L +++++ +Y+ S + ++ + Q WL++ F AF
Sbjct: 162 RVYASYKFFLYTLLGSVLTMLAIMAMYWQSGTT-DMTELLKYGFPAGMQTWLWLACFAAF 220
Query: 375 AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLII 434
++K+P+WP+HTWLPDAHV+APT GSVILA +MLKLG YG +RFSL +FP AS YF+ +
Sbjct: 221 SVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVF 280
Query: 435 TLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALI 494
TLS+++IIY SL+AM+Q DIKKLIAYSS+AHMG+VT+GIF +QGAI QM+SH ++
Sbjct: 281 TLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIV 340
Query: 495 SSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
S A+F+ +G +Y+++ TR IS +GG++N +P ++V F+IF++AN LPGTSGF+GEF+ +
Sbjct: 341 SGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFLTL 400
Query: 555 LSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ + N + + +T +I SAAY+L L + +IF
Sbjct: 401 IGVFRANTLVALFAATGVILSAAYALWLYRRVIF 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V +IF +++H
Sbjct: 282 LSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + +I ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 26/311 (8%)
Query: 586 IIFVLGQMIMIS-----GNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F+L +++MI L ++ L+ + + + + K+ +++S K+F+ +
Sbjct: 118 IAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASY---KFFLYTL 174
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S + I +Y +GT ++ + + L S K+ + P H
Sbjct: 175 LGSVLTMLAIMAMYWQSGTTDMTELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVH 230
Query: 701 MWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLI 758
W+PD + Q + +L KL + I L + PL ++ + L++ ++I
Sbjct: 231 TWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSL--SMFPLASDYFAPFVFTLSVLAII 288
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + IF G+
Sbjct: 289 YTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGI--------- 339
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
+ GA + + + + + T E+ + GL P A+ MIF + G P T GF +F
Sbjct: 340 VSGALFLCVGVVYDRLH-TREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFL 398
Query: 879 IFEKIFETQKI 889
+F +
Sbjct: 399 TLIGVFRANTL 409
>gi|398376967|ref|ZP_10535147.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. AP16]
gi|397727294|gb|EJK87720.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. AP16]
Length = 503
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 275/369 (74%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ L+ F+ +L S L ++K+L +YM AFL+L +
Sbjct: 68 EKHGWLGT-GISYHLGVDGISMLFVILSTFLMPFCVLASWLSVEKRLKDYMIAFLVLETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DIPALLAYKFPPHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LKLG YGL+RFSL +FP+AS YF+ L+ +S+I+IIY SL+A++Q DIKKLIA
Sbjct: 246 VILAGILLKLGGYGLIRFSLGMFPNASEYFAPLVFAMSVIAIIYTSLVALMQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANQQGVQGAIFQMLSHGIVSGALFLCVGVIYDRTHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 100/176 (56%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGLIRFSLGMFPNASEYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q DIK++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 282 MSVIAIIYTSLVALMQEDIKKLIAYSSVAHMGYVTMGIFAANQQGVQG---AIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 339 IVSGALFLCVG-VIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 36/302 (11%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
++ ++ K + L L+ + K+ + P H W+PD + A +++L+
Sbjct: 195 DIPALL-AYKFPPHMQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 721 TPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKR 772
I+ +L LI+ L + N + ++ +++ ++I ++ A+ Q + K+
Sbjct: 251 --------ILLKLGGYGLIRFSLGMFPNASEYFAPLVFAMSVIAIIYTSLVALMQEDIKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKN 831
+IAYSS+AHMG + I + IF G+ + GA F + ++ +
Sbjct: 303 LIAYSSVAHMGYVTMGIFAANQQGVQGAIFQMLSHGI---------VSGALFLCVGVIYD 353
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWL 891
T T E+ + GL P A+ MM+F + G P T GF +F +F W+
Sbjct: 354 RT--HTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WV 410
Query: 892 LL 893
L
Sbjct: 411 AL 412
>gi|153207248|ref|ZP_01946012.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|165918810|ref|ZP_02218896.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii Q321]
gi|212218225|ref|YP_002305012.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuK_Q154]
gi|120576736|gb|EAX33360.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|165917534|gb|EDR36138.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii Q321]
gi|212012487|gb|ACJ19867.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuK_Q154]
Length = 506
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 270/377 (71%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI I Y LG+DG+S+ I LT F TL+++L S +KK++ Y+SAFL++ G +IG
Sbjct: 72 WISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFLVMQGAVIGV 131
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD MLFY F+EA LIP++I IG WG RSYAAIKFFLYT GS L+L++++YL +
Sbjct: 132 FSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLLVALLYLR-M 190
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +++L ++ QI +F+ F AFAIK+P+WP+HTWLPDAH EAP GSV+LA
Sbjct: 191 HSDSFYIPDYYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLA 250
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
A+MLKLG YG LRFSLPI PDAS L+I LSLI+I+YI IA+ Q D+KKLIAYSS+
Sbjct: 251 ALMLKLGGYGFLRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSV 310
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG FM+ +S++GA++QMISHA + AMF++ G LY Q+ +
Sbjct: 311 AHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFGVLYEQIHS 370
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I NFGGI +P+F+ FF++F+++N LPGTSGF+GEFM++LS K +F + L ++
Sbjct: 371 RYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTFLAAST 430
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ AAY+L + K + +
Sbjct: 431 LVIGAAYTLWMYKRVFY 447
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 27/228 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y +++T + FL K +PLHTWLPD+ E P S ++ AA M+ G
Sbjct: 200 YYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVL-AALMLKLGG 258
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L +++ + I ++G + I Q D+K++IAYS+++ +G++T+
Sbjct: 259 YGFLRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGFVTL 318
Query: 143 GLGVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
G + + V ++ +++HAF +FL+ G ++ H++ I N G
Sbjct: 319 GAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFG-VLYEQIHSRYIYNFG 377
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFY-------SKDKKKIWIDY 228
G+ K MP ++ +S VG P SGF S K W+ +
Sbjct: 378 GIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTF 425
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 25/244 (10%)
Query: 673 NINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYR 732
+++ +V L L + + K+ + P H W+PD + A + +++L+ L L + Y
Sbjct: 204 HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLAA---LMLKLGGYG 260
Query: 733 LLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG----- 783
L + LP+V + + +++ L++ +++ AI Q + K++IAYSS+AHMG
Sbjct: 261 FL-RFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGFVTLG 319
Query: 784 -LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF---AILGAFGVIILLKNNTCNKTDE 839
M+F I++ + + S + + +I++ F A+ AFGV+ +
Sbjct: 320 AFMVFFIVAHTGDRAD--AYLSLEGAMVQMISHAFGAGAMFLAFGVL-----YEQIHSRY 372
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCS 899
+ F G+ + P+ A M+F S G P T GF +F + F+ W+ L
Sbjct: 373 IYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKA-SFWVTFLAASTL 431
Query: 900 LIGA 903
+IGA
Sbjct: 432 VIGA 435
>gi|424894577|ref|ZP_18318151.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393178804|gb|EJC78843.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 503
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHLGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA I+LKLG YGL+RFSL +FP AS YF+ L+ +S+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGILLKLGGYGLIRFSLGMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVIYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGILLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 MSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 135/300 (45%), Gaps = 32/300 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIIT 715
++ ++ ++ L + K+ + P H W+PD + G+ I+
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + +I L + P+ ++ ++ +++ ++I ++ A+ Q + K++I
Sbjct: 251 ILL----KLGGYGLIRFSL--GMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLI 304
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNT 833
AYSS+AHMG + I + IF G+ + GA F + ++ + T
Sbjct: 305 AYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVIYDRT 355
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
T E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 356 --HTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WVAL 412
>gi|89053686|ref|YP_509137.1| NADH dehydrogenase subunit M [Jannaschia sp. CCS1]
gi|88863235|gb|ABD54112.1| NADH dehydrogenase subunit M [Jannaschia sp. CCS1]
Length = 514
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/379 (50%), Positives = 271/379 (71%), Gaps = 13/379 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
++ W+ F + Y +G+DG+S+ F+ LT F+ I I +K ++ EYM A LIL L+
Sbjct: 67 EEAPWL--FGLTYKVGVDGISILFVMLTTFLMPITIAACWSVKTRVKEYMIALLILETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F ALD +LFY+FFEA LIP+F+IIG WGG+NR YA+ KFFLYT +GS+LML++M+ +
Sbjct: 125 IGVFVALDMVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMVAM 184
Query: 341 YYIS---------NKSFNILSWHQLSITKIE--QIWLFITFFIAFAIKIPIWPMHTWLPD 389
Y + N +F ++ T + Q LF+ FF +FA+K+P+WP+HTWLPD
Sbjct: 185 YVDAGTTDIPTLLNHNFGTETFTVAGFTVVGGLQTMLFLAFFASFAVKMPMWPVHTWLPD 244
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSV+LAAI+LK+G YG LRFSLP+FP AS F+ LI+ LS+I+IIY SL+AM
Sbjct: 245 AHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVASDIFAPLILWLSVIAIIYTSLVAM 304
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
VQ D+KKLIAYSS+AHMGFVT+GIF + + GAI QMISH IS A+F+ +G +Y++M
Sbjct: 305 VQEDMKKLIAYSSVAHMGFVTMGIFAANQNGVDGAIFQMISHGFISGALFLCVGVIYDRM 364
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I +GG++ +P ++ F++F++AN LPGTSGF+GEF+ ++ + N IG+L
Sbjct: 365 HTRDIDAYGGLVVRMPAYAAIFMLFTMANVGLPGTSGFVGEFLTLIGVFQVNTWIGLLAC 424
Query: 570 TALIFSAAYSLCLSKNIIF 588
T +I SA+Y+L L + ++F
Sbjct: 425 TGVILSASYALWLYRRVVF 443
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F +++ + +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVASDIFAPLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 LSVIAIIYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQNGVDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H +DI GGL MP ++ ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTRDIDAYGGLVVRMPAYAAIFMLFTMANVGLPGTSGFVGE 405
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 48/317 (15%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+++ YL E L+ + L + I N I++S K+F+ L S ML + +Y
Sbjct: 132 DMVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVAMYVDA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGL------------SFKLGISPFHMWVPD 705
GT ++ ++ N +N ++ ++ GL + K+ + P H W+PD
Sbjct: 189 GTTDIPTLLN----HNFGTETFTVAGFTVVGGLQTMLFLAFFASFAVKMPMWPVHTWLPD 244
Query: 706 VYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKI----LLILAIFSL 757
+ A T + L I+ ++ ++ LP+ I +L L++ ++
Sbjct: 245 AHVQAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVASDIFAPLILWLSVIAI 296
Query: 758 IIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
I ++ A+ Q + K++IAYSS+AHMG + I + N D +F +I++ F
Sbjct: 297 IYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------NGVDGAIFQMISHGF 348
Query: 818 AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
I GA + + + + + T ++D + GL R P A I M+F + G P T GF +F
Sbjct: 349 -ISGALFLCVGVIYDRMH-TRDIDAYGGLVVRMPAYAAIFMLFTMANVGLPGTSGFVGEF 406
Query: 878 FIFEKIFETQKIWLLLL 894
+F+ W+ LL
Sbjct: 407 LTLIGVFQVNT-WIGLL 422
>gi|335035083|ref|ZP_08528426.1| NADH dehydrogenase subunit M [Agrobacterium sp. ATCC 31749]
gi|333793514|gb|EGL64868.1| NADH dehydrogenase subunit M [Agrobacterium sp. ATCC 31749]
Length = 503
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W Y+ LG+DG+S+ F+ LT F+ +L S + I+K++ EYM AFL+L +
Sbjct: 68 EKHAWFGNIAAYH-LGVDGISMLFVILTTFLMPFCVLASWNSIEKRVKEYMIAFLLLEVV 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFEATLIP+FIIIG WGG +R YA+ KFFLYTL+GS+L +++++
Sbjct: 127 MVGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLTMLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ S + ++ + Q WL++ F AF++K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQSGTT-DMTELLKYGFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA +MLKLG YG +RFSL +FP AS YF+ + TLS+++IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QGA+ QM+SH ++S A+F+ +G +Y+++ TR IS +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANVQGVQGALFQMLSHGIVSGALFLCVGVVYDRLHTREISAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F+IF++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFLTLIGVFRANTLVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.8 bits (216), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V ++F +++H
Sbjct: 282 LSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGALFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + +I ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 132/311 (42%), Gaps = 26/311 (8%)
Query: 586 IIFVLGQMIMIS-----GNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I F+L +++M+ L ++ L+ + + + + K+ +++S K+F+ +
Sbjct: 118 IAFLLLEVVMVGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASY---KFFLYTL 174
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L S + I +Y +GT ++ + + L S K+ + P H
Sbjct: 175 LGSVLTMLAIMAMYWQSGTTDMTELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVH 230
Query: 701 MWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLI 758
W+PD + Q + +L KL + I L + PL ++ + L++ ++I
Sbjct: 231 TWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSL--SMFPLASDYFAPFVFTLSVLAII 288
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + +F G+
Sbjct: 289 YTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGALFQMLSHGI--------- 339
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
+ GA + + + + + T E+ + GL P A+ MIF + G P T GF +F
Sbjct: 340 VSGALFLCVGVVYDRLH-TREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFL 398
Query: 879 IFEKIFETQKI 889
+F +
Sbjct: 399 TLIGVFRANTL 409
>gi|254474527|ref|ZP_05087913.1| NADH dehydrogenase i, m subunit [Ruegeria sp. R11]
gi|214028770|gb|EEB69605.1| NADH dehydrogenase i, m subunit [Ruegeria sp. R11]
Length = 515
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/392 (48%), Positives = 277/392 (70%), Gaps = 20/392 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++ + WI F + Y +G+DG+S+ F+ LT F+ + IL S D+K ++ EYM
Sbjct: 58 PANTGFQFVEEAE-WI--FGLKYKMGVDGISVLFVMLTTFVMPLTILASWDVKTRVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG+NR YA+ KFFLYT GS
Sbjct: 115 IAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFFGS 174
Query: 331 LLMLISMIYLYY--------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAI 376
+LMLI+MI ++ S SF++L H I Q LF+ FF +FA+
Sbjct: 175 VLMLIAMIAMFADAGTTDIEALLTHSFSAGSFDVLGIH---IVGGMQTLLFLAFFASFAV 231
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITL 436
K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + ++L++ +
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTDLVLWM 291
Query: 437 SLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISS 496
S I+I+Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+
Sbjct: 292 SAIAIVYTSLVAIVQDDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISA 351
Query: 497 AMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS 556
A+F+ +G +Y++M TR I +GG++ +P +++ F+ F++ N LPGTSGFIGEF+ ++
Sbjct: 352 ALFLCVGVIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMG 411
Query: 557 AVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + ++ +T +IFSA Y+L L + ++F
Sbjct: 412 TFQKNTWVAMIATTGVIFSAGYALWLYRRVVF 443
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTDLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ I+Q+D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 MSAIAIVYTSLVAIVQDDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + + + VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGF 402
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 140/314 (44%), Gaps = 42/314 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFFGSVLMLIAMIAMFADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT +++++ F+V+ ++ I + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIEALLTHSFSAGSFDVLGIH-IVGGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ +++ L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTDLVLWMSAIAIVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ AI Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVAIVQDDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T ++D + GL R P AL+ M F G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTL 409
Query: 881 EKIFETQKIWLLLL 894
F+ + W+ ++
Sbjct: 410 MGTFQ-KNTWVAMI 422
>gi|420245146|ref|ZP_14748813.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF080]
gi|398049079|gb|EJL41525.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF080]
Length = 503
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 275/369 (74%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ LT F+ +L S + I+K+L EYM AFL+L +
Sbjct: 68 EKHDWLGT-GISYHLGVDGISMLFVILTTFLMPFCVLASWNTIEKRLKEYMIAFLLLEVV 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+ G F +LD +LFY+FFEATLIP+F+IIG WGG +R YA+ KFFLYTL+GS+LM+++++
Sbjct: 127 MTGVFVSLDVVLFYVFFEATLIPMFVIIGVWGGKDRVYASYKFFLYTLLGSVLMMLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ F AF++K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITELLKYGFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA +MLKLG YG++RFSL +FP AS +F+ L+ +LS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVMLKLGGYGMIRFSLAMFPIASEHFAPLVFSLSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QGAI QM+SH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANVQGLQGAIFQMLSHGIVSGALFLCVGVIYDRLHTREITAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F+IF++AN LPGTSGFIGEF+ I+ + N + + +T +I SA+Y+
Sbjct: 366 LVNNMPKYAVAFMIFTMANVGLPGTSGFIGEFLTIIGVFRVNTWVALFAATGVILSASYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILF-I 107
K +P+HTWLPD+ ++ PT S ++ + G MI +F +++ + ++F +
Sbjct: 223 KMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGMIRFSLAMFPIASEHFAPLVFSL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKA 164
I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V +IF +++H
Sbjct: 283 SVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGLQGAIFQMLSHGIVSG 342
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + +I ++ VG P SGF
Sbjct: 343 ALFLCVG-VIYDRLHTREITAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGF 393
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 127/295 (43%), Gaps = 22/295 (7%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + + + + K+ +++S K+F+ +L S M+ I +Y GT
Sbjct: 138 LFYVFFEATLIPMFVIIGVWGGKDRVYASY---KFFLYTLLGSVLMMLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ + + L S K+ + P H W+PD + Q + +L
Sbjct: 195 DITELLKY----GFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVI-NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VMLKLGGYGMIRFSL--AMFPIASEHFAPLVFSLSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD 838
+AHMG + I + IF G+ + GA + + + + + T
Sbjct: 309 VAHMGYVTMGIFAANVQGLQGAIFQMLSHGI---------VSGALFLCVGVIYDRLH-TR 358
Query: 839 ELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E+ + GL P A+ MIF + G P T GF +F +F W+ L
Sbjct: 359 EITAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFIGEFLTIIGVFRVNT-WVAL 412
>gi|424914544|ref|ZP_18337908.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392850720|gb|EJB03241.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 503
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHLGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ + LS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ +L + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLLGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ + L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLLGVFRVNT-WVAL 412
>gi|209548876|ref|YP_002280793.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534632|gb|ACI54567.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 503
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHLGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ + LS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ +L + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLLGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ + L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLLGVFRVNT-WVAL 412
>gi|350562002|ref|ZP_08930839.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349780320|gb|EGZ34655.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 508
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/377 (54%), Positives = 284/377 (75%), Gaps = 13/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI FN++Y LG+DG+S+ I LT T+++++ + + +K ++A Y++AFLI+ GL+IG
Sbjct: 70 WIPAFNVHYHLGVDGISMPLILLTTLTTVLVVIAAWESVKDRVAYYLAAFLIMQGLMIGM 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+FFEA LIP+F++IG WGG R YA IKFFLYT +GS+ MLI++IY+Y+
Sbjct: 130 FSALDAVLFYVFFEAMLIPMFLVIGIWGGPRRVYATIKFFLYTFLGSVFMLIALIYMYFQ 189
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF IL +H L + QI +F+ FF AFA+KIP++P+HTWLPDAHVEAPT GSVILA
Sbjct: 190 AGGSFAILDFHHLPLPMTAQILIFLAFFAAFAVKIPMFPVHTWLPDAHVEAPTGGSVILA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLK+G YG LRFSLPI PDAS LIITLSLI+I+YI L+A+VQ D+KKLIAYSSI
Sbjct: 250 AIMLKIGGYGFLRFSLPITPDASAVLDVLIITLSLIAIVYIGLVALVQSDMKKLIAYSSI 309
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGF TLG F+ + I G ++QMISH IS+AMF+++G LY+++ +
Sbjct: 310 AHMGFATLGFFIAFMIFRNTGDWTGASLGIAGGMVQMISHGFISAAMFLAVGVLYDRLHS 369
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I ++GG++N +P F+ FF++F++AN LPGTSGF+GEFM+IL+A + +F + L +T
Sbjct: 370 RNIGDYGGVVNTMPWFASFFVLFAMANTGLPGTSGFVGEFMVILAAFRADFWLAFLAATT 429
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ +AAY+L L K ++F
Sbjct: 430 LVLAAAYTLWLVKRVVF 446
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 26/211 (12%)
Query: 30 PLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMIT 88
PL +TA + FL K FP+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 203 PLPMTAQILIFLAFFAAFAVKIPMFPVHTWLPDAHVEAPTGGSVIL-AAIMLKIGGYGFL 261
Query: 89 RMS-PLFELSNTALSI-ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG--- 143
R S P+ ++ L + I+ + I ++GL+ ++Q+D+K++IAYS+++ +G+ T+G
Sbjct: 262 RFSLPITPDASAVLDVLIITLSLIAIVYIGLVALVQSDMKKLIAYSSIAHMGFATLGFFI 321
Query: 144 ---------------LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
LG++ V +++H F A +FL+ G ++ + H+++I + GG
Sbjct: 322 AFMIFRNTGDWTGASLGIAGGMV---QMISHGFISAAMFLAVG-VLYDRLHSRNIGDYGG 377
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ MP ++ ++ G P SGF +
Sbjct: 378 VVNTMPWFASFFVLFAMANTGLPGTSGFVGE 408
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 121/280 (43%), Gaps = 40/280 (14%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA--LSLLLIIV 688
A IK+F+ L S FML + +Y + F ++ +++ + A L L
Sbjct: 164 ATIKFFLYTFLGSVFMLIALIYMY-----FQAGGSFAILDFHHLPLPMTAQILIFLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H W+PD + G S+I+ ++ ++ LP+ +
Sbjct: 219 AFAVKIPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGF--------LRFSLPITPD 270
Query: 745 WQKIL----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+L + L++ +++ + A+ Q + K++IAYSSIAHMG F+ + + +I
Sbjct: 271 ASAVLDVLIITLSLIAIVYIGLVALVQSDMKKLIAYSSIAHMG---FATLGFFIAF--MI 325
Query: 801 IFNSCD---------SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNP 851
N+ D G+ +I++ F F + +L + ++ + + G+ P
Sbjct: 326 FRNTGDWTGASLGIAGGMVQMISHGFISAAMFLAVGVLYDRLHSR--NIGDYGGVVNTMP 383
Query: 852 WCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWL 891
W A ++F + G P T GF +F + F WL
Sbjct: 384 WFASFFVLFAMANTGLPGTSGFVGEFMVILAAFRAD-FWL 422
>gi|372281564|ref|ZP_09517600.1| NADH:ubiquinone oxidoreductase subunit M [Oceanicola sp. S124]
Length = 518
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/385 (49%), Positives = 276/385 (71%), Gaps = 15/385 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+++ W+ + Y +G+DG+S+ F+ LT FI + I S D+ K++ EYM AFL+L L+
Sbjct: 67 EERDWL--LGLKYKMGVDGISVLFVLLTTFIMPLTIWSSWDVSKRVKEYMMAFLLLETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G F ALD +LFY+FFEA+LIP+F+IIG WGG NR YA+ KFFLYT +GS+LML++M+ +
Sbjct: 125 LGVFMALDLVLFYLFFEASLIPMFLIIGIWGGKNRIYASFKFFLYTFLGSVLMLVAMVAM 184
Query: 341 YYISNK-----------SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPD 389
+ + S + LS ++IT Q LF+ FF +FA+K+P+WP+HTWLPD
Sbjct: 185 FADAGTTDIPTLLTHDFSSSPLSVLGMTITGGMQTLLFVAFFASFAVKMPMWPVHTWLPD 244
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSVILAAI+LK+G YG LRFSLP+FP + S I+ +S I+I+Y SL+A+
Sbjct: 245 AHVQAPTAGSVILAAILLKMGGYGFLRFSLPMFPVGADVMSTFILGISAIAIVYTSLVAL 304
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
VQ D+KKLIAYSS+AHMG+VT+GIF + + GAI QMISH IS A+F+ +G +Y++M
Sbjct: 305 VQEDMKKLIAYSSVAHMGYVTMGIFSANQQGLDGAIFQMISHGFISGALFLCVGVIYDRM 364
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I +GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++ A + N I + +
Sbjct: 365 HTRDIEAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLMGAFQANTWIALFAT 424
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMI 594
+ +IFSAAY+L L + + V+G +I
Sbjct: 425 SGVIFSAAYALYLYRRV--VMGDLI 447
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSI-ILF 106
K +P+HTWLPD+ ++ PT A ++I AA ++ G + R S P+F + +S IL
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVILAAILLKMGGYGFLRFSLPMFPVGADVMSTFILG 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
I AI + L+ ++Q D+K++IAYS+++ +GY+T+G+ +IF +++H F
Sbjct: 291 ISAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFSANQQGLDGAIFQMISHGFIS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H +DI GGL MP + + ++ VG P SGF +
Sbjct: 351 GALFLCVG-VIYDRMHTRDIEAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 405
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 42/313 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I KN I++S K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEASLIPMFLIIGIWGGKNRIYAS---FKFFLYTFLGSVLMLVAMVAMFADA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALS-------LLLIIVGLSF--KLGISPFHMWVPDVYQ 708
GT ++ ++ ++ SVL ++ LL + SF K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLTH-DFSSSPLSVLGMTITGGMQTLLFVAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL--LILAIFSLIIGNV 762
A +++L+ I+ ++ ++ LP+ ++ IL I ++ I
Sbjct: 248 QAPTAGSVILAA--------ILLKMGGYGFLRFSLPMFPVGADVMSTFILGISAIAIVYT 299
Query: 763 S--AITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
S A+ Q + K++IAYSS+AHMG + I S D +F +I++ F I
Sbjct: 300 SLVALVQEDMKKLIAYSSVAHMGYVTMGIFSANQ--------QGLDGAIFQMISHGF-IS 350
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA + + + + + T +++ + GL R P ALI M F + G P T GF +F
Sbjct: 351 GALFLCVGVIYDRMH-TRDIEAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTL 409
Query: 881 EKIFETQKIWLLL 893
F+ W+ L
Sbjct: 410 MGAFQANT-WIAL 421
>gi|212212194|ref|YP_002303130.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuG_Q212]
gi|212010604|gb|ACJ17985.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuG_Q212]
Length = 506
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/377 (52%), Positives = 269/377 (71%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI I Y LG+DG+S+ I LT F TL+++L S +KK++ Y+SAFL++ G +IG
Sbjct: 72 WISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFLVMQGAVIGV 131
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD MLFY F+EA LIP++I IG WG RSYAAIKFFLYT GS L+L++++YL +
Sbjct: 132 FSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLLVALLYLR-M 190
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +++L ++ QI +F+ F AFAIK+P+WP+HTWLPDAH EAP GSV+LA
Sbjct: 191 HSDSFYIPDYYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLA 250
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
A+MLKLG YG RFSLPI PDAS L+I LSLI+I+YI IA+ Q D+KKLIAYSS+
Sbjct: 251 ALMLKLGGYGFFRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSV 310
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG FM+ +S++GA++QMISHA + AMF++ G LY Q+ +
Sbjct: 311 AHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFGVLYEQIHS 370
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I NFGGI +P+F+ FF++F+++N LPGTSGF+GEFM++LS K +F + L ++
Sbjct: 371 RYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTFLAAST 430
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ AAY+L + K + +
Sbjct: 431 LVIGAAYTLWMYKRVFY 447
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 27/228 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y +++T + FL K +PLHTWLPD+ E P S ++ AA M+ G
Sbjct: 200 YYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVL-AALMLKLGG 258
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L +++ + I ++G + I Q D+K++IAYS+++ +G++T+
Sbjct: 259 YGFFRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGFVTL 318
Query: 143 GLGVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
G + + V ++ +++HAF +FL+ G ++ H++ I N G
Sbjct: 319 GAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFG-VLYEQIHSRYIYNFG 377
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFY-------SKDKKKIWIDY 228
G+ K MP ++ +S VG P SGF S K W+ +
Sbjct: 378 GIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTF 425
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 113/248 (45%), Gaps = 33/248 (13%)
Query: 673 NINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFV 728
+++ +V L L + + K+ + P H W+PD + G S+++ L+ F
Sbjct: 204 HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLAALMLKLGGYGFF- 262
Query: 729 IIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG- 783
+ LP+V + + +++ L++ +++ AI Q + K++IAYSS+AHMG
Sbjct: 263 -------RFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGF 315
Query: 784 -----LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF---AILGAFGVIILLKNNTCN 835
M+F I++ + + S + + +I++ F A+ AFGV+
Sbjct: 316 VTLGAFMVFFIVAHTGDRAD--AYLSLEGAMVQMISHAFGAGAMFLAFGVL-----YEQI 368
Query: 836 KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLI 895
+ + F G+ + P+ A M+F S G P T GF +F + F+ W+ L
Sbjct: 369 HSRYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKA-SFWVTFLA 427
Query: 896 IMCSLIGA 903
+IGA
Sbjct: 428 ASTLVIGA 435
>gi|99080600|ref|YP_612754.1| NADH dehydrogenase subunit M [Ruegeria sp. TM1040]
gi|99036880|gb|ABF63492.1| proton-translocating NADH-quinone oxidoreductase chain M [Ruegeria
sp. TM1040]
Length = 521
Score = 382 bits (980), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/382 (48%), Positives = 271/382 (70%), Gaps = 19/382 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+++ WI F + Y +G+DG+S+ F+ LT F+ + IL S + ++ EYM AFL+L L+
Sbjct: 67 EERDWI--FGLKYKMGVDGISVLFVMLTTFVMPLTILASWSVTNRVKEYMIAFLVLETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT GS+LML++M+ +
Sbjct: 125 LGVFMALDMVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFFGSVLMLVAMVAM 184
Query: 341 YY--------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
Y+ S + FN+L H L Q LF+ FF +FA+K+P+WP+HTW
Sbjct: 185 YFDAGTTDIVKLLSHEFSYEGFNVLGIHVLGGM---QTLLFLAFFASFAVKMPMWPVHTW 241
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S +++I+ +S I+I+Y SL
Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILWMSAIAIVYTSL 301
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+AMVQ D+KKLIAYSS+AHMGFVT+GIF + + GAI QM+SH IS+A+F+ +G +Y
Sbjct: 302 VAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFISAALFLCVGVIY 361
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++M TR I +GG++ +P +++ F+ F++ N LPGTSGF+GEF+ ++ A + N +
Sbjct: 362 DRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGAFQENTWVAF 421
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+ +T +IFSA Y+L L + ++F
Sbjct: 422 VATTGVIFSACYALWLYRRVVF 443
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 MSAIAIVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A LFL G +I + H +DI GGL MP + + + VG P SGF +
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGE 405
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 42/311 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+++ YL E L+ + L + I K+ I++S K+F+ S ML + +Y
Sbjct: 132 DMVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFFGSVLMLVAMVAMYFDA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ + FNV+ ++ + + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIVKLLSHEFSYEGFNVLGIHVLG-GMQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ +++ L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILWMSAIAIVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGVDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T ++D + GL R P AL+ M F G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTL 409
Query: 881 EKIFETQKIWL 891
F+ + W+
Sbjct: 410 MGAFQ-ENTWV 419
>gi|365879263|ref|ZP_09418695.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. ORS 375]
gi|365292788|emb|CCD91226.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. ORS 375]
Length = 502
Score = 382 bits (980), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 269/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+KK W+ I Y +G+DG+SL F+ LT A + I+ +K +L EYM AFLIL L
Sbjct: 68 EKKNWLAA-GISYHMGVDGISLPFVILTTALMPFCIVASWKSVKNRLREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYWNAGTT-DIPTLMHTAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q DIKKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 366 LVNRMPIYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAGYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MPI + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPIYALVFMVFTMANVGLPGTSGFVGE 396
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 32/264 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + N+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMHTAVPRNLQT----WAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 280 -WT-----LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGT--------MQ 325
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFM 861
G+F +I++ I+ G + L ++ T E+ + GL R P AL+ M+F
Sbjct: 326 GVAGGVFQMISH--GIVS--GALFLCVGVVYDRMHTREIAAYGGLVNRMPIYALVFMVFT 381
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 382 MANVGLPGTSGFVGEFMTLLGTFK 405
>gi|367473642|ref|ZP_09473190.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. ORS 285]
gi|365274038|emb|CCD85658.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. ORS 285]
Length = 502
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 269/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+KK W+ I Y +G+DG+SL F+ LT A + I+ +K +L EYM AFLIL L
Sbjct: 68 EKKNWLAA-GISYHMGVDGISLPFVILTTALMPFCIVASWKSVKNRLREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYWNAGTT-DIPTLMHTAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q DIKKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 366 LVNRMPIYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAGYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MPI + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPIYALVFMVFTMANVGLPGTSGFVGE 396
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 32/264 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + N+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMHTAVPRNLQT----WAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 280 -WT-----LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGT--------MQ 325
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFM 861
G+F +I++ I+ G + L ++ T E+ + GL R P AL+ M+F
Sbjct: 326 GVAGGVFQMISH--GIVS--GALFLCVGVVYDRMHTREIAAYGGLVNRMPIYALVFMVFT 381
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 382 MANVGLPGTSGFVGEFMTLLGTFK 405
>gi|29654727|ref|NP_820419.1| NADH dehydrogenase subunit M [Coxiella burnetii RSA 493]
gi|161831072|ref|YP_001597280.1| NADH dehydrogenase (ubiquinone) subunit M [Coxiella burnetii RSA
331]
gi|29541995|gb|AAO90933.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii RSA 493]
gi|161762939|gb|ABX78581.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii RSA
331]
Length = 506
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/377 (52%), Positives = 269/377 (71%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI I Y LG+DG+S+ I LT F TL+++L S +KK++ Y+SAFL++ G +IG
Sbjct: 72 WISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFLVMQGAVIGV 131
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD MLFY F+EA LIP++I IG WG RSYAAIKFFLYT GS L+L++++YL +
Sbjct: 132 FSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLLVALLYLR-M 190
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ SF I +++L ++ QI +F+ F AFAIK+P+WP+HTWLPDAH EAP GSV+LA
Sbjct: 191 HSDSFYIPDYYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLA 250
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
A+MLKLG YG RFSLPI PDAS L+I LSLI+I+YI IA+ Q D+KKLIAYSS+
Sbjct: 251 ALMLKLGGYGFFRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSV 310
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLG FM+ +S++GA++QMISHA + AMF++ G LY Q+ +
Sbjct: 311 AHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFGVLYEQIHS 370
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R I NFGGI +P+F+ FF++F+++N LPGTSGF+GEFM++LS K +F + L ++
Sbjct: 371 RYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTFLAAST 430
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ AAY+L + K + +
Sbjct: 431 LVIGAAYTLWMYKRVFY 447
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 27/228 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
+Y +++T + FL K +PLHTWLPD+ E P S ++ AA M+ G
Sbjct: 200 YYRLHMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVL-AALMLKLGG 258
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+ ++ L +++ + I ++G + I Q D+K++IAYS+++ +G++T+
Sbjct: 259 YGFFRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGFVTL 318
Query: 143 GLGVSAYTV---------------SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
G + + V ++ +++HAF +FL+ G ++ H++ I N G
Sbjct: 319 GAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAFG-VLYEQIHSRYIYNFG 377
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFY-------SKDKKKIWIDY 228
G+ K MP ++ +S VG P SGF S K W+ +
Sbjct: 378 GIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASFWVTF 425
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 113/248 (45%), Gaps = 33/248 (13%)
Query: 673 NINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFV 728
+++ +V L L + + K+ + P H W+PD + G S+++ L+ F
Sbjct: 204 HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEAPVGGSVVLAALMLKLGGYGFF- 262
Query: 729 IIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG- 783
+ LP+V + + +++ L++ +++ AI Q + K++IAYSS+AHMG
Sbjct: 263 -------RFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDMKKLIAYSSVAHMGF 315
Query: 784 -----LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF---AILGAFGVIILLKNNTCN 835
M+F I++ + + S + + +I++ F A+ AFGV+
Sbjct: 316 VTLGAFMVFFIVAHTGDRAD--AYLSLEGAMVQMISHAFGAGAMFLAFGVL-----YEQI 368
Query: 836 KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLI 895
+ + F G+ + P+ A M+F S G P T GF +F + F+ W+ L
Sbjct: 369 HSRYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKA-SFWVTFLA 427
Query: 896 IMCSLIGA 903
+IGA
Sbjct: 428 ASTLVIGA 435
>gi|340027647|ref|ZP_08663710.1| NADH:ubiquinone oxidoreductase subunit M [Paracoccus sp. TRP]
Length = 513
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/396 (48%), Positives = 280/396 (70%), Gaps = 18/396 (4%)
Query: 211 PFFSGF-YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEY 269
P +GF + +D WI + Y +G+DG+S+ F+ LT F+ + IL + ++ K+ EY
Sbjct: 58 PANTGFQFVEDHP--WI--MGLRYKMGVDGISVLFVLLTTFMMPLTILSTWNVGDKVKEY 113
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFL+L GL+IG F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +G
Sbjct: 114 MIAFLVLEGLMIGVFTALDLILFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLG 173
Query: 330 SLLMLISMIYLYYISNKS---------FNILSWHQLSITKI--EQIWLFITFFIAFAIKI 378
S+LML++MI +Y IS + F ++ L +T I Q+ LF+ FF +FA+K+
Sbjct: 174 SVLMLVAMIAMYRISGTTDIVALLQYEFPSENFRLLGMTVIGGTQMLLFLAFFASFAVKM 233
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P+WP+HTWLPDAHV+APT GSV+LAA++LK+G YG LRFSLP+FP AS + LS
Sbjct: 234 PMWPVHTWLPDAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASAVAQPYVFWLSA 293
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAM 498
I+I+Y SL+A+ Q D+KK+IAYSS+AHMG+VTLGIF ++ + GAI QM+SH +S A+
Sbjct: 294 IAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTLGIFAANQVGVDGAIFQMLSHGFVSGAL 353
Query: 499 FISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAV 558
F+ +G +Y++M TR I +GG++N +P ++ F+ F++AN LPGTSGF+GEF+ ++
Sbjct: 354 FLCVGVIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGTF 413
Query: 559 KFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
+ N + ++ +T +IFSAAY+L L + + LGQ+I
Sbjct: 414 RVNTWVALVATTGVIFSAAYALWLYRRV--TLGQLI 447
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT S L+ AA ++ G + R S P+F + S A + +
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVLL-AAVLLKMGGYGFLRFSLPMFPVASAVAQPYVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTLGIFAANQVGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ VG P SGF +
Sbjct: 348 FVSGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGE 405
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 140/309 (45%), Gaps = 32/309 (10%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + +Y I+
Sbjct: 132 DLILFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMIAMYRIS 188
Query: 658 GTLE----LQSIFNVIKLNNINCSVLALSLLLIIVGL----SFKLGISPFHMWVPDVYQG 709
GT + LQ F + +V+ + +L+ + + K+ + P H W+PD +
Sbjct: 189 GTTDIVALLQYEFPSENFRLLGMTVIGGTQMLLFLAFFASFAVKMPMWPVHTWLPDAHVQ 248
Query: 710 ASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV----INWQKILLILAIFSLIIGNVSAI 765
A ++LL+ L + ++ LP+ Q + L+ +++ ++ A+
Sbjct: 249 APTAGSVLLAAV----LLKMGGYGFLRFSLPMFPVASAVAQPYVFWLSAIAIVYTSLVAL 304
Query: 766 TQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
Q + K++IAYSS+AHMG + I + N + D +F ++++ F F
Sbjct: 305 AQSDMKKVIAYSSVAHMGYVTLGIF----AANQV----GVDGAIFQMLSHGFVSGALFLC 356
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
+ ++ + T E+D + GL R P A + M F + G P T GF +F F
Sbjct: 357 VGVIYDRM--HTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGTFR 414
Query: 886 TQKIWLLLL 894
W+ L+
Sbjct: 415 VNT-WVALV 422
>gi|56697602|ref|YP_167971.1| NADH dehydrogenase subunit M [Ruegeria pomeroyi DSS-3]
gi|56679339|gb|AAV96005.1| NADH dehydrogenase I, M subunit [Ruegeria pomeroyi DSS-3]
Length = 513
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/392 (47%), Positives = 277/392 (70%), Gaps = 20/392 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++ + W+ + Y +G+DG+S+ F+ LT FI + IL S ++ ++ EYM
Sbjct: 58 PADTGFQMVEEGE-WL--MGLKYKMGVDGISVLFVLLTTFIMPLTILASWEVTTRVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT +GS
Sbjct: 115 IAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGS 174
Query: 331 LLMLISMIYLY--------------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAI 376
+LML++M+ +Y S++SF++L H L Q +F+ FF +FA+
Sbjct: 175 VLMLVAMVSMYVDAGTTDIALLMKHQFSSESFSLLGVHVLGGA---QTLMFLAFFASFAV 231
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITL 436
K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + ++LI+ L
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTDLILWL 291
Query: 437 SLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISS 496
S I+++Y SL+AMVQ D+KKLIAYSS+AHMGFVT+GIF + + GAI QM+SH IS+
Sbjct: 292 SAIAVVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFISA 351
Query: 497 AMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS 556
A+F+ +G +Y++M TR I +GG++N +P ++ F++F++AN LPGTSGFIGEF+ ++
Sbjct: 352 ALFLCVGVIYDRMHTRDIDAYGGLVNRMPTYARVFMLFTMANVGLPGTSGFIGEFLTLMG 411
Query: 557 AVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + + ++ +IFSA Y+L L + ++F
Sbjct: 412 TFQKNTWVAAVAASGVIFSAGYALWLYRRVVF 443
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTDLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 LSAIAVVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP ++ ++ VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVNRMPTYARVFMLFTMANVGLPGTSGF 402
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 40/310 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFLGSVLMLVAMVSMYVDA 188
Query: 658 GTLE----LQSIFNVIKLNNINCSVLA----LSLLLIIVGLSFKLGISPFHMWVPDVYQG 709
GT + ++ F+ + + VL L L + K+ + P H W+PD +
Sbjct: 189 GTTDIALLMKHQFSSESFSLLGVHVLGGAQTLMFLAFFASFAVKMPMWPVHTWLPDAHVQ 248
Query: 710 ASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGN 761
A T + L I+ ++ ++ LP+ +++ L L+ +++ +
Sbjct: 249 AP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTDLILWLSAIAVVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 301 LVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGVDGAIFQMLSHGFISAA 352
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
F + ++ + T ++D + GL R P A + M+F + G P T GF +F
Sbjct: 353 LFLCVGVIYDRM--HTRDIDAYGGLVNRMPTYARVFMLFTMANVGLPGTSGFIGEFLTLM 410
Query: 882 KIFETQKIWL 891
F+ + W+
Sbjct: 411 GTFQ-KNTWV 419
>gi|149914596|ref|ZP_01903126.1| NADH dehydrogenase subunit M [Roseobacter sp. AzwK-3b]
gi|149811389|gb|EDM71224.1| NADH dehydrogenase subunit M [Roseobacter sp. AzwK-3b]
Length = 515
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/414 (47%), Positives = 288/414 (69%), Gaps = 23/414 (5%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T L+ + L G P +GF ++++ W+ + Y +G+DG+S+ F+ LT FI I
Sbjct: 42 TSLTFLVSIFILTGFDPNDTGFQMVEERE-WL--LGLQYKMGVDGISVLFVMLTTFIMPI 98
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
I S ++ K++ EYM AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG
Sbjct: 99 TIAASWNVTKRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKE 158
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLY--------------YISNKSFNILSWHQLSITK 360
R YA+ KFFLYT +GS+LMLI+M+ ++ ++SF++L H I
Sbjct: 159 RVYASFKFFLYTFLGSVLMLIAMVAMFSDAGTTDIVDLMNHQFGSESFSVLGIH---IVG 215
Query: 361 IEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLP 420
Q +FI FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP
Sbjct: 216 GMQTLMFIAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLP 275
Query: 421 IFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKIS 480
+FP + + LI+ +S I+I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF + +
Sbjct: 276 MFPVGAELLTPLILWMSAIAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFSVNQQG 335
Query: 481 IQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCS 540
I GAI QMISH IS A+F+ +G +Y++M TR I +GG++N +P +++ F++F++AN
Sbjct: 336 IDGAIFQMISHGFISGALFLIVGVIYDRMHTREIDAYGGLVNRMPAYALIFLLFTMANVG 395
Query: 541 LPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
LPGTSGFIGEF+ ++ + N + ++ +T +I SAAY+L L + ++ LG +I
Sbjct: 396 LPGTSGFIGEFLTLVGVFQVNTWVALVATTGVILSAAYALWLYRRVM--LGDLI 447
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + L+ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGAELLTPLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 291 MSAIAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFSVNQQGIDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F LFL G +I + H ++I GGL MP + L+ ++ VG P SGF
Sbjct: 348 FISGALFLIVG-VIYDRMHTREIDAYGGLVNRMPAYALIFLLFTMANVGLPGTSGF 402
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 40/313 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K +++S K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERVYAS---FKFFLYTFLGSVLMLIAMVAMFSDA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLAL-------SLLLIIVGLSF--KLGISPFHMWVPDVY- 707
GT ++ + N + + + SVL + +L+ I SF K+ + P H W+PD +
Sbjct: 189 GTTDIVDLMNH-QFGSESFSVLGIHIVGGMQTLMFIAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + L PL++ W ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAELLTPLIL-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I S+ D +F +I++ F I G
Sbjct: 301 LVALAQEDMKKLIAYSSVAHMGYVTMGIFSVNQ--------QGIDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A +I+ + + + T E+D + GL R P ALI ++F + G P T GF +F
Sbjct: 352 ALFLIVGVIYDRMH-TREIDAYGGLVNRMPAYALIFLLFTMANVGLPGTSGFIGEFLTLV 410
Query: 882 KIFETQKIWLLLL 894
+F+ W+ L+
Sbjct: 411 GVFQVNT-WVALV 422
>gi|241204100|ref|YP_002975196.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857990|gb|ACS55657.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 503
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHLGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ L+ LS+++IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFALSVMAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 LSVMAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLA----YKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFALSVMAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNT-WVAL 412
>gi|91977343|ref|YP_570002.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris BisB5]
gi|91683799|gb|ABE40101.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodopseudomonas palustris BisB5]
Length = 505
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/369 (49%), Positives = 269/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + II + ++ EYM AFL+L L
Sbjct: 72 EKAPWLAS-GIGYHMGVDGISLPFVILTTALMPFCIIASWKSVTMRVREYMMAFLVLETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 131 MIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LYWTAGTT-DIPTLMNTAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FP+AS YF+ L+ LS+I+I+Y SL+A++Q DIKKLIA
Sbjct: 250 VVLAAILLKMGGYGFLRFSLPMFPEASLYFAPLVYALSVIAIVYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF + G++ QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGNTQGVAGSVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGF+GEF+ +L + N + + +I SAAY+
Sbjct: 370 LVNRMPIYAFVFLVFTMANVGLPGTSGFVGEFLTLLGTFRVNIPTATIATLGVILSAAYA 429
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 430 LWLYRKVVF 438
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F ++ + +++
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPEASLYFAPLVYA 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ S+F +++H
Sbjct: 286 LSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGNTQGVAG---SVFQMISHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MPI L+ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPIYAFVFLVFTMANVGLPGTSGFVGE 400
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ N N+ + L
Sbjct: 169 ASFKFFLYTLLGSVLMLLAIMALYWTAGTTDIPTLMNTAVPRNLQT----WAWLAFFASF 224
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 225 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPEAS 276
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ + ++ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I + T +F
Sbjct: 277 LYFAPLVYALSVIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGNTQGVAGSVF 336
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P A + ++F
Sbjct: 337 QMISHGI---------VSGALFLCVGVVYDRMH-TREIAAYGGLVNRMPIYAFVFLVFTM 386
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F
Sbjct: 387 ANVGLPGTSGFVGEFLTLLGTFR 409
>gi|310816700|ref|YP_003964664.1| NADH dehydrogenase subunit M [Ketogulonicigenium vulgare Y25]
gi|385234304|ref|YP_005795646.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Ketogulonicigenium vulgare WSH-001]
gi|308755435|gb|ADO43364.1| NADH dehydrogenase subunit M [Ketogulonicigenium vulgare Y25]
gi|343463215|gb|AEM41650.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Ketogulonicigenium vulgare WSH-001]
Length = 507
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/387 (49%), Positives = 276/387 (71%), Gaps = 15/387 (3%)
Query: 211 PFFSGF-YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEY 269
P + GF + +D+ W+ + Y LG+DG+S+ F+ LT F+ ++IL + ++ +
Sbjct: 56 PAYDGFQFVEDRA--WV--MGMSYRLGVDGISVLFVLLTTFLMPLVILTAWPVQDRTRTL 111
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M A+L+L L+IG F ALD +LFY+FFEA LIP+F+IIG WGG NR YAA KFFLYT +G
Sbjct: 112 MIAWLVLETLMIGVFTALDLVLFYLFFEAGLIPMFLIIGVWGGKNRVYAAFKFFLYTFLG 171
Query: 330 SLLMLISMIYLYYISNKSFNILSWHQLSITKIE---------QIWLFITFFIAFAIKIPI 380
S+LML++M+ +Y+ S + I + + +I I Q+ LF+ FF +FA+K+P+
Sbjct: 172 SVLMLVAMLVMYWESGTT-CIAACGEGAIELIAYPFPVAGGMQVLLFLAFFASFAVKMPM 230
Query: 381 WPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
WP+HTWLPDAHV+APT GSVILAA++LK+G YG LRFSLP+FP AS + L++ LS I+
Sbjct: 231 WPVHTWLPDAHVQAPTSGSVILAAVLLKMGGYGFLRFSLPMFPVASDMLAPLMLWLSAIA 290
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
++Y SL+A+VQ D+KKLIAYSS+AHMGFVT+G+F L + + GAI QMISH IS+A+F+
Sbjct: 291 VVYASLVALVQSDMKKLIAYSSVAHMGFVTMGMFALNRQGVDGAIFQMISHGFISAALFL 350
Query: 501 SIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKF 560
+G +Y++M TR IS FGG++N +P + F++F++AN LPGTSGF+GEF+ +L +
Sbjct: 351 LVGVIYDRMHTREISAFGGLLNRMPAYGALFLLFTMANIGLPGTSGFVGEFLTLLGTYQA 410
Query: 561 NFCIGVLTSTALIFSAAYSLCLSKNII 587
N + ++ T +IFSA Y L L + +I
Sbjct: 411 NTWVALVAGTGIIFSAGYGLWLFRRVI 437
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT S +I AA ++ G + R S P+F +++ L+ ++L+
Sbjct: 227 KMPMWPVHTWLPDAHVQAPTSGS-VILAAVLLKMGGYGFLRFSLPMFPVASDMLAPLMLW 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q+D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 286 LSAIAVVYASLVALVQSDMKKLIAYSSVAHMGFVTMGMFALNRQGVDG---AIFQMISHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A LFL G +I + H ++I GGL MP L+ ++ +G P SGF +
Sbjct: 343 FISAALFLLVG-VIYDRMHTREISAFGGLLNRMPAYGALFLLFTMANIGLPGTSGFVGE 400
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 138/309 (44%), Gaps = 35/309 (11%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + + KN ++ AA K+F+ L S ML + ++Y +
Sbjct: 130 DLVLFYLFFEAGLIPMFLIIGVWGGKNRVY---AAFKFFLYTFLGSVLMLVAMLVMYWES 186
Query: 658 GTLELQSIFN-VIKL----NNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----- 707
GT + + I+L + + L L + K+ + P H W+PD +
Sbjct: 187 GTTCIAACGEGAIELIAYPFPVAGGMQVLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPT 246
Query: 708 QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAI 765
G+ I+ +LL L + ++ + L PL +L L+ +++ ++ A+
Sbjct: 247 SGSVILAAVLLKMGGYGFLRFSLPMFPVASDMLAPL-------MLWLSAIAVVYASLVAL 299
Query: 766 TQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
Q + K++IAYSS+AHMG + + ++ D +F +I++ F F +
Sbjct: 300 VQSDMKKLIAYSSVAHMGFVTMGMFALNR--------QGVDGAIFQMISHGFISAALFLL 351
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
+ ++ + T E+ F GL R P + ++F + G P T GF +F ++
Sbjct: 352 VGVIYDRM--HTREISAFGGLLNRMPAYGALFLLFTMANIGLPGTSGFVGEFLTLLGTYQ 409
Query: 886 TQKIWLLLL 894
W+ L+
Sbjct: 410 ANT-WVALV 417
>gi|298291834|ref|YP_003693773.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Starkeya novella DSM 506]
gi|296928345|gb|ADH89154.1| proton-translocating NADH-quinone oxidoreductase, chain M [Starkeya
novella DSM 506]
Length = 504
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/417 (47%), Positives = 288/417 (69%), Gaps = 3/417 (0%)
Query: 173 IIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIY 232
I++ ++ + ++ + + T +T +I LL L G + + + W+ F Y
Sbjct: 21 IVLMIRGDDEVAQRNARWVALWATLVTFVISLLLLAGFDMAGTEFQFVEHRAWLGDFAAY 80
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+G+DG+SL F+ LT + + IL S + I ++ EYM FL+L L+IG F +LD +
Sbjct: 81 R-MGVDGISLPFLLLTTLLMPMCILASWESIHVRVKEYMICFLVLETLMIGTFASLDLLQ 139
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFE LIP+F+IIG WGG R YA KFFLYTL GS+LM+++++ +Y+ + + +I
Sbjct: 140 FYIFFEGGLIPMFLIIGIWGGKRRIYATFKFFLYTLAGSVLMMLAIMAMYWQAGTT-DIA 198
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q WL+I FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK+G
Sbjct: 199 VLLKHGFPSRMQYWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGG 258
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP+AS YF+ + TLS+I+I+Y SL+A++Q DIKKLIAYSSIAHMG+VT+
Sbjct: 259 YGFLRFSLPMFPEASAYFAPFVFTLSVIAIVYTSLVALMQEDIKKLIAYSSIAHMGYVTM 318
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF LT+ IQGA+ QM+SH +S A+F+ +G +Y++M TR I+ +GGI++ +P ++ F
Sbjct: 319 GIFTLTQEGIQGAVFQMVSHGFVSGALFLCVGVIYDRMHTREIAAYGGIVHRMPLYATVF 378
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGFIGEF+ +L+ N + +T +I SAAY+L L + +IF
Sbjct: 379 MVFTMANVGLPGTSGFIGEFLTLLATFGRNTWVAFFATTGVILSAAYALWLYRRVIF 435
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ + +F
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPEASAYFAPFVFT 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q DIK++IAYS+++ +GY+T+G L ++F +++H F
Sbjct: 283 LSVIAIVYTSLVALMQEDIKKLIAYSSIAHMGYVTMGIFTLTQEGIQGAVFQMVSHGFVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GG+ MP+ ++ ++ VG P SGF
Sbjct: 343 GALFLCVG-VIYDRMHTREIAAYGGIVHRMPLYATVFMVFTMANVGLPGTSGF 394
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 126/288 (43%), Gaps = 35/288 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+LL Y+ E L+ + L + I K I+ A K+F+ + S M+ I +Y
Sbjct: 136 DLLQFYIFFEGGLIPMFLIIGIWGGKRRIY---ATFKFFLYTLAGSVLMMLAIMAMYWQA 192
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT ++ + + + + + K+ + P H W+PD + A +++
Sbjct: 193 GTTDIAVLLK----HGFPSRMQYWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 248
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ ++ ++ LP+ + + L++ +++ ++ A+ Q +
Sbjct: 249 LAG--------ILLKMGGYGFLRFSLPMFPEASAYFAPFVFTLSVIAIVYTSLVALMQED 300
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSSIAHMG + I ++ +F G ++ +F +G +I
Sbjct: 301 IKKLIAYSSIAHMGYVTMGIFTLTQEGIQGAVFQMVSHG--FVSGALFLCVG----VIYD 354
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
+ + T E+ + G+ R P A + M+F + G P T GF +F
Sbjct: 355 RMH----TREIAAYGGIVHRMPLYATVFMVFTMANVGLPGTSGFIGEF 398
>gi|114765012|ref|ZP_01444159.1| NADH dehydrogenase subunit M [Pelagibaca bermudensis HTCC2601]
gi|114542559|gb|EAU45584.1| NADH dehydrogenase subunit M [Pelagibaca bermudensis HTCC2601]
Length = 516
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/385 (49%), Positives = 273/385 (70%), Gaps = 15/385 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
++ WI N Y +G+DG+S+ F+ LT F+ + IL S D+K ++ EYM AFL+L L+
Sbjct: 67 EEGTWIMGMN--YKMGVDGISVLFVMLTTFMMPLTILASWDVKLRVKEYMIAFLLLETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G F ALD +LFY+FFEA LIP+F+IIG WGG NR YA+ KFFLYT +GS+LML++M+ +
Sbjct: 125 LGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKNRIYASFKFFLYTFLGSVLMLVAMVAM 184
Query: 341 YYISNKS-FNILSWHQLSITKIE----------QIWLFITFFIAFAIKIPIWPMHTWLPD 389
Y + + L H+ + E Q L++ FF +FA+K+P+WP+HTWLPD
Sbjct: 185 YADAGTTDIPTLLAHEFAFADFEVLGIHIVGGLQTMLWLAFFASFAVKMPMWPVHTWLPD 244
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S + L+ +S I+I+Y SL+A+
Sbjct: 245 AHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVFWMSAIAIVYTSLVAL 304
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
VQ D+KKLIAYSS+AHMG+VT+GIF + I GAI QMISH IS A+F+ +G +Y++M
Sbjct: 305 VQEDMKKLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIYDRM 364
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I +GG++N +P +++ F++F++AN LPGTSGFIGEF+ ++ + N + + +
Sbjct: 365 HTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFIGEFLTLMGIFQVNTWVAAVAA 424
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMI 594
+ +IFSAAY+L L + + VLG +I
Sbjct: 425 SGVIFSAAYALWLYRRV--VLGDLI 447
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 291 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGIDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGF 402
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I KN I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKNRIYAS---FKFFLYTFLGSVLMLVAMVAMYADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ F V+ ++ I + + L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLAHEFAFADFEVLGIH-IVGGLQTMLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + + PLV W ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVF-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGIDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P ALI M+F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFIGEFLTLM 410
Query: 882 KIFE 885
IF+
Sbjct: 411 GIFQ 414
>gi|86137581|ref|ZP_01056158.1| NADH dehydrogenase subunit M [Roseobacter sp. MED193]
gi|85825916|gb|EAQ46114.1| NADH dehydrogenase subunit M [Roseobacter sp. MED193]
Length = 515
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/382 (47%), Positives = 273/382 (71%), Gaps = 19/382 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+++ WI F + Y +G+DG+S+ F+ LT F+ + IL S ++ ++ EYM AFL+L L+
Sbjct: 67 EERDWI--FGLQYKMGVDGISVLFVMLTTFVMPLTILASWNVSTRVKEYMIAFLLLETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS+LML++M+ +
Sbjct: 125 LGVFMALDLVLFYVFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMVAM 184
Query: 341 YY--------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
Y S SF++L H + Q +F+ FF +FA+K+P+WP+HTW
Sbjct: 185 YVDAQTTDIVQLLTHSFSAASFDVLGIH---VVGGMQTLMFLAFFASFAVKMPMWPVHTW 241
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + ++LI+ +S I+++Y SL
Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYTSL 301
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+AMVQ D+KKLIAYSS+AHMGFVT+GIF + + GAI QM+SH IS+A+F+ +G +Y
Sbjct: 302 VAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFISAALFLCVGVIY 361
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++M TR I+ +GG++ +P +++ F+ F++ N LPGTSGF+GEF+ ++ A + N +
Sbjct: 362 DRMHTRDINAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGAFQKNTWVAA 421
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+ ++ +IFSA Y+L L + ++F
Sbjct: 422 VAASGVIFSAGYALWLYRRVVF 443
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 MSAIAVVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A LFL G +I + H +DI GGL MP + + + VG P SGF +
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDINAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGE 405
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 133/308 (43%), Gaps = 40/308 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I K+ I++S K+F+ L S ML + +Y T
Sbjct: 135 LFYVFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMVAMYVDAQTT 191
Query: 661 ELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGAS 711
++ + F+V+ ++ + + L L + K+ + P H W+PD + A
Sbjct: 192 DIVQLLTHSFSAASFDVLGIHVVG-GMQTLMFLAFFASFAVKMPMWPVHTWLPDAHVQAP 250
Query: 712 IIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGNVS 763
T + L I+ ++ ++ LP+ ++ L ++ +++ ++
Sbjct: 251 --------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYTSLV 302
Query: 764 AITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAF 823
A+ Q + K++IAYSS+AHMG + I + D +F ++++ F F
Sbjct: 303 AMVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGVDGAIFQMLSHGFISAALF 354
Query: 824 GVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKI 883
+ ++ + T +++ + GL R P AL+ M F G P T GF +F
Sbjct: 355 LCVGVIYDRM--HTRDINAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGA 412
Query: 884 FETQKIWL 891
F+ + W+
Sbjct: 413 FQ-KNTWV 419
>gi|86357251|ref|YP_469143.1| NADH dehydrogenase subunit M [Rhizobium etli CFN 42]
gi|86281353|gb|ABC90416.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli CFN
42]
Length = 503
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHVGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGRDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ L+ +S+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 MSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 131/295 (44%), Gaps = 22/295 (7%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + ++ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGRDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ +++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD 838
+AHMG + I + IF G+ + GA + + + + + T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRTH-TR 358
Query: 839 ELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 359 EINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WVAL 412
>gi|402486143|ref|ZP_10832975.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. CCGE 510]
gi|401814799|gb|EJT07129.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. CCGE 510]
Length = 503
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHLGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ + LS+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVIYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 87.8 bits (216), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ + L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVIYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WVAL 412
>gi|406989819|gb|EKE09537.1| hypothetical protein ACD_16C00139G0005 [uncultured bacterium]
Length = 517
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/376 (50%), Positives = 280/376 (74%), Gaps = 2/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
SG + ++K W+ +I Y +G+DG+SL L+A + L+ +L+S I+ K+ EYM A
Sbjct: 62 SGEFQFEEKLQWMPLLDISYHVGLDGISLPLFLLSALLILLAVLVSWSSIQTKVPEYMMA 121
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L ++G F ALD +LFY+FFE L+P+F+IIG WGG +R YAA+KFFLYTL+GS+L
Sbjct: 122 FLVLETFLLGMFSALDFILFYVFFEGVLLPMFLIIGIWGGPDRIYAAMKFFLYTLLGSVL 181
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
L+++IY+Y+ S +I + S Q WL++ FF +FA+KIP+WP HTWLPDAHV
Sbjct: 182 SLLAIIYIYFEVGSS-DIPTALITSFDPQIQTWLWLAFFASFAVKIPMWPFHTWLPDAHV 240
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSV+LA I+LK+G YG +RFS+P+FP+AS YF+ LI TLS+I+IIY+SL+A+ Q
Sbjct: 241 EAPTAGSVVLAGILLKMGGYGFIRFSIPMFPEASSYFTPLIFTLSIIAIIYMSLVALAQQ 300
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAY+S+AHMGFVTLGIF + ++GAI+QM+SH L+S+A+FI +G +Y+++ +R
Sbjct: 301 DMKKLIAYASVAHMGFVTLGIFTVDSQGMEGAIMQMVSHGLVSAALFICVGVVYDRLHSR 360
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG+++ +P ++ FF+ F LA+ LPGTSGF+GEF+++L + N VL ST +
Sbjct: 361 EIAAYGGLVHTMPRYATFFMFFILASIGLPGTSGFVGEFLVLLGTFQVNSLATVLASTGM 420
Query: 573 IFSAAYSLCLSKNIIF 588
+ AAY+L L + ++F
Sbjct: 421 VLGAAYALWLYRRVMF 436
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 102/180 (56%), Gaps = 16/180 (8%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P HTWLPD+ +E PT A +++ A ++ G + R S P+F +++ + ++F
Sbjct: 225 KIPMWPFHTWLPDAHVEAPT-AGSVVLAGILLKMGGYGFIRFSIPMFPEASSYFTPLIFT 283
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV-------SIFHLMTH 159
+I A +M L+ + Q D+K++IAY++++ +G++T+G+ +TV +I +++H
Sbjct: 284 LSIIAIIYMSLVALAQQDMKKLIAYASVAHMGFVTLGI----FTVDSQGMEGAIMQMVSH 339
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LF+ G ++ + H+++I GGL MP + +L+ +G P SGF +
Sbjct: 340 GLVSAALFICVG-VVYDRLHSREIAAYGGLVHTMPRYATFFMFFILASIGLPGTSGFVGE 398
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 32/309 (10%)
Query: 588 FVLGQMIMISGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGF 645
F+LG M S + + Y+ E L+ + L + I + I+ AA+K+F+ +L S
Sbjct: 128 FLLG---MFSALDFILFYVFFEGVLLPMFLIIGIWGGPDRIY---AAMKFFLYTLLGSVL 181
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPD 705
L I +Y G+ ++ + + + + + L + K+ + PFH W+PD
Sbjct: 182 SLLAIIYIYFEVGSSDIPTAL----ITSFDPQIQTWLWLAFFASFAVKIPMWPFHTWLPD 237
Query: 706 VY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+ G+ ++ +LL K+ + I R I + ++ L+I ++I
Sbjct: 238 AHVEAPTAGSVVLAGILL----KMGGYGFI-RFSIPMFPEASSYFTPLIFTLSIIAIIYM 292
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAY+S+AHMG + I ++ + I GL +I
Sbjct: 293 SLVALAQQDMKKLIAYASVAHMGFVTLGIFTVDSQGMEGAIMQMVSHGLVSAALFI---- 348
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GV+ + E+ + GL P A M F+ + G P T GF +F +
Sbjct: 349 -CVGVV-----YDRLHSREIAAYGGLVHTMPRYATFFMFFILASIGLPGTSGFVGEFLVL 402
Query: 881 EKIFETQKI 889
F+ +
Sbjct: 403 LGTFQVNSL 411
>gi|421587036|ref|ZP_16032493.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. Pop5]
gi|403708594|gb|EJZ23239.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. Pop5]
Length = 503
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+S+ FI L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHDWLGT-GIGYHVGVDGISMLFIILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ L+ +S+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANVQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ V SIF +++H
Sbjct: 282 MSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ +++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANVQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNT-WVAL 412
>gi|377808329|ref|YP_004979521.1| proton-translocating NADH-quinone oxidoreductase [Burkholderia sp.
YI23]
gi|357939526|gb|AET93083.1| proton-translocating NADH-quinone oxidoreductase [Burkholderia sp.
YI23]
Length = 511
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/366 (46%), Positives = 267/366 (72%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ F I Y LG+DG+SLWF LTA TLI+ S + K++ +Y AFL+LSG + G
Sbjct: 68 WLPQFGIAYHLGVDGISLWFTVLTAVTTLIVFAASWQSVTKQVGQYYGAFLVLSGCMQGV 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
F +LDGMLF++FFEA+LIP++++IGTWGG R YAAI++F ++L+GSL ML ++IYL+
Sbjct: 128 FASLDGMLFFVFFEASLIPLYLLIGTWGGGERRVYAAIRYFFFSLLGSLAMLAALIYLWS 187
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
++ +F+I +W L + QI +F+ F AF++K+P+WP+HTWLPD + E PT +V+L
Sbjct: 188 QAH-TFDIGAWRHLQLGFAAQIAIFVCFLAAFSVKVPMWPVHTWLPDVNAEGPTGAAVLL 246
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
MLK+G YGLLR+ LPI PDA+++F+ +I LSL++++Y SL+A+ Q D++KL+AYS+
Sbjct: 247 G--MLKVGGYGLLRYVLPIVPDAAHFFAPAMIALSLVAVVYGSLVALAQTDMRKLLAYSA 304
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHMG VTLG+F ++ +GA++QM+S+ ++S AM + G L + I +GG+ N
Sbjct: 305 VAHMGLVTLGLFTFDRMGTEGAVVQMLSYGIVSGAMLLCTGVLVERTNDGSIDAYGGVAN 364
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P F+V+ ++F++AN LPGTSGF+GEF++++ A++ NF IG +++L+ SAAY+L +
Sbjct: 365 TMPRFAVYAMLFAMANVGLPGTSGFVGEFLVLMGAIRVNFWIGAAAASSLVLSAAYTLWM 424
Query: 583 SKNIIF 588
K +IF
Sbjct: 425 VKRVIF 430
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 152/339 (44%), Gaps = 51/339 (15%)
Query: 562 FCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISG---------NNLLSIYLGLELMS 612
F + +T ++F+A++ ++K + G +++SG + +L ++ E
Sbjct: 87 FTVLTAVTTLIVFAASWQ-SVTKQVGQYYGAFLVLSGCMQGVFASLDGML-FFVFFEASL 144
Query: 613 LTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLN 672
+ L +LI + AAI+YF +L S ML + L+ T F++
Sbjct: 145 IPLYLLIGTWGGGERRVYAAIRYFFFSLLGSLAMLAALIYLWSQAHT------FDIGAWR 198
Query: 673 NINCSVLALSLLLI--IVGLSFKLGISPFHMWVPDV----YQGASIIITLLLSTTPKLSL 726
++ A + + + S K+ + P H W+PDV GA++++ +L K+
Sbjct: 199 HLQLGFAAQIAIFVCFLAAFSVKVPMWPVHTWLPDVNAEGPTGAAVLLGML-----KVGG 253
Query: 727 FVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
+ L++ +LP+V + + ++ L++ +++ G++ A+ Q + ++++AYS++AHM
Sbjct: 254 YG-----LLRYVLPIVPDAAHFFAPAMIALSLVAVVYGSLVALAQTDMRKLLAYSAVAHM 308
Query: 783 GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE--L 840
GL+ + + + G+ G ++L +T++ +
Sbjct: 309 GLVTLGLFTFDRMGTEGAVVQMLSYGIVS------------GAMLLCTGVLVERTNDGSI 356
Query: 841 DIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
D + G+ P A+ M+F + G P T GF +F +
Sbjct: 357 DAYGGVANTMPRFAVYAMLFAMANVGLPGTSGFVGEFLV 395
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 28/212 (13%)
Query: 23 IGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPD-SMEGPTPASALIHAATMVT 81
IG W L A + F+ K +P+HTWLPD + EGPT A+ L+ M+
Sbjct: 194 IGAWRHLQLGFAAQIAIFVCFLAAFSVKVPMWPVHTWLPDVNAEGPTGAAVLL---GMLK 250
Query: 82 AGIFMITR--------MSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYST 133
G + + R + F + ALS++ + + L+ + Q D+++++AYS
Sbjct: 251 VGGYGLLRYVLPIVPDAAHFFAPAMIALSLVAVV------YGSLVALAQTDMRKLLAYSA 304
Query: 134 LSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++ +G +T+GL G ++ ++++ + L G +++ ++ I G
Sbjct: 305 VAHMGLVTLGLFTFDRMGTEG---AVVQMLSYGIVSGAMLLCTG-VLVERTNDGSIDAYG 360
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
G+ MP + +++ ++ VG P SGF +
Sbjct: 361 GVANTMPRFAVYAMLFAMANVGLPGTSGFVGE 392
>gi|424874791|ref|ZP_18298453.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393170492|gb|EJC70539.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 503
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHNWLGT-GIGYHVGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ L+ +S+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 MSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ +++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNT-WVAL 412
>gi|407775140|ref|ZP_11122436.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira
profundimaris WP0211]
gi|407282088|gb|EKF07648.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira
profundimaris WP0211]
Length = 505
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/369 (48%), Positives = 269/369 (72%), Gaps = 2/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ W+ NI Y +G+DG+S+ F+ L F+T I IL + + I+K++ EYM AFL+L +
Sbjct: 68 EQADWMPGLNISYHMGVDGISVLFVLLATFLTPICILSAWEAIQKRVKEYMIAFLVLETM 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALDG+LFY+FFE LIP+FIIIG WGG R YAA K FLYTL+GS+LML++++
Sbjct: 128 MVGMFSALDGLLFYLFFEGVLIPMFIIIGVWGGQRRVYAAFKLFLYTLLGSVLMLVALLA 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + + Q+WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 MYFEAGTT-DIPTLMEYGFDYNMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGS 246
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LK+G YG LRFSLP+ P AS F+ L+ TLS+++IIY SL+A+ Q D+KKLIA
Sbjct: 247 VILAGVLLKMGGYGFLRFSLPMMPLASETFAPLVFTLSIVAIIYTSLVALAQQDMKKLIA 306
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG VT+G F + I+G+I QM+SH ++S A+F+ +G +Y+++ TR I +GG
Sbjct: 307 YSSVAHMGIVTIGAFTFNQHGIEGSIFQMLSHGVVSGALFLCVGVVYDRIHTREIDAYGG 366
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+++ +P +++ F+ F++A+ LPGT GF+GE + +L A + N + +T LI AAY+
Sbjct: 367 LVHRMPSYALIFMFFTMASVGLPGTGGFVGEILALLGAFEANTWVAFFAATGLILGAAYA 426
Query: 580 LCLSKNIIF 588
L L + IIF
Sbjct: 427 LYLYRRIIF 435
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 16/180 (8%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ L++ + ++F
Sbjct: 224 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSLPMMPLASETFAPLVFT 282
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV-------SIFHLMTH 159
+I A + L+ + Q D+K++IAYS+++ +G +T+G A+T SIF +++H
Sbjct: 283 LSIVAIIYTSLVALAQQDMKKLIAYSSVAHMGIVTIG----AFTFNQHGIEGSIFQMLSH 338
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + + ++ VG P GF +
Sbjct: 339 GVVSGALFLCVG-VVYDRIHTREIDAYGGLVHRMPSYALIFMFFTMASVGLPGTGGFVGE 397
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 112/265 (42%), Gaps = 28/265 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K F+ +L S ML + +Y GT ++ ++ N+ + L
Sbjct: 166 AAFKLFLYTLLGSVLMLVALLAMYFEAGTTDIPTLMEYGFDYNMQLWLW----LAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + + L + PLV
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFSLPMMPLASETFAPLVF 281
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L+I ++I ++ A+ Q + K++IAYSS+AHMG++ + IF
Sbjct: 282 T-------LSIVAIIYTSLVALAQQDMKKLIAYSSVAHMGIVTIGAFTFNQHGIEGSIFQ 334
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+ + GA + + + + + T E+D + GL R P ALI M F +
Sbjct: 335 MLSHGV---------VSGALFLCVGVVYDRIH-TREIDAYGGLVHRMPSYALIFMFFTMA 384
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQK 888
G P T GF + FE
Sbjct: 385 SVGLPGTGGFVGEILALLGAFEANT 409
>gi|254510814|ref|ZP_05122881.1| NADH dehydrogenase i, m subunit [Rhodobacteraceae bacterium KLH11]
gi|221534525|gb|EEE37513.1| NADH dehydrogenase i, m subunit [Rhodobacteraceae bacterium KLH11]
Length = 514
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/440 (45%), Positives = 299/440 (67%), Gaps = 21/440 (4%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++ + W+ + Y +G+DG+S+ F+ LT FI + IL S ++ ++ EYM
Sbjct: 58 PANTGFQMVEEGE-WL--LGLKYKMGVDGISVLFVLLTTFIMPLTILASWNVTDRVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG+NR YA+ KFFLYT +GS
Sbjct: 115 IAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGS 174
Query: 331 LLMLISMIYLYYISNKS-FNILSWHQLS----------ITKIEQIWLFITFFIAFAIKIP 379
+LML++M+ +Y + + L HQ S I Q +F+ FF +FA+K+P
Sbjct: 175 VLMLVAMVAMYADAGTTDIEALMSHQFSSEGFSVLGIYIVGGMQTLMFLAFFASFAVKMP 234
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S +++++ +S I
Sbjct: 235 MWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDVVLWMSAI 294
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+++Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+A+F
Sbjct: 295 AVVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALF 354
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ +G +Y++M TR I +GG++ +P +++ F++F++AN LPGTSGFIGEF+ ++ A +
Sbjct: 355 LCVGVIYDRMHTRDIEAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTLMGAFQ 414
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIF------VLGQMIMISGNNLLSIYLGLELMSL 613
N + + +T +IFSA Y+L L + ++F L M +S L I+ L LM++
Sbjct: 415 VNTWVTAVAATGVIFSAGYALWLYRRVVFGDLIKESLKAMTDMSARERL-IFAPLILMTI 473
Query: 614 TLCVLIASQKNNIFSSEAAI 633
L V + + I +S AA+
Sbjct: 474 LLGVYPSLVTDVIGNSTAAL 493
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 105/176 (59%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDVVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 MSAIAVVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + ++ ++ VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIEAYGGLVIRMPAYALVFMLFTMANVGLPGTSGF 402
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 136/305 (44%), Gaps = 41/305 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVAMYADA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLA---------LSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT +++++ + + ++ SVL L L + K+ + P H W+PD +
Sbjct: 189 GTTDIEALMSH-QFSSEGFSVLGIYIVGGMQTLMFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV----INWQKILLILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDVVLWMSAIAVVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T +++ + GL R P AL+ M+F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIEAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTL 409
Query: 881 EKIFE 885
F+
Sbjct: 410 MGAFQ 414
>gi|114797733|ref|YP_760461.1| NADH-quinone oxidoreductase subunit M [Hyphomonas neptunium ATCC
15444]
gi|114737907|gb|ABI76032.1| NADH-quinone oxidoreductase, M subunit [Hyphomonas neptunium ATCC
15444]
Length = 500
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/374 (51%), Positives = 267/374 (71%), Gaps = 6/374 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y ++ W Y I Y LGIDGLS+ I LT F+T I +L S + I K++ EY+ AFL+
Sbjct: 73 YQLVEQHAW--YGPISYKLGIDGLSMSLILLTTFLTPICLLASWNSIDKRVTEYVVAFLV 130
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L +IG F ALD +LFYIFFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GSLL+L+
Sbjct: 131 LETFMIGVFTALDLVLFYIFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTLIGSLLLLV 190
Query: 336 SMIYLYYISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
+ IY+ ++ + F +L Q + Q WL++ F +FA+K+P+WP+HTWLPDAHV+A
Sbjct: 191 AAIYMIQVAGSADFEVL--EQFAFDPGVQTWLWLAFLASFAVKLPMWPVHTWLPDAHVQA 248
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSV+LA ++LK+G YG+LRFSLP+FPDAS YF ++ L++I+IIY SL+A Q D+
Sbjct: 249 PTAGSVVLAGVLLKMGGYGMLRFSLPMFPDASAYFQPMMFALAVIAIIYTSLVAWRQTDM 308
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KKLIAYSS+AHMGFVTLGIF + IQGAI QM+SH LIS A+F+ +G +Y++M TR I
Sbjct: 309 KKLIAYSSVAHMGFVTLGIFAFNETGIQGAIFQMLSHGLISGALFLIVGVVYDRMHTREI 368
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+ +GG++ +P ++ FF++F++AN LPGTSGF+GE + ++ + + +IF
Sbjct: 369 AAYGGLVGRMPIYAGFFMLFTMANVGLPGTSGFVGEILTMIGGFQAATWAAFGAAFGVIF 428
Query: 575 SAAYSLCLSKNIIF 588
SA Y L L + +F
Sbjct: 429 SAVYMLTLYRRTVF 442
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWLPD+ ++ PT S ++ + G M+ P+F ++ ++F
Sbjct: 231 KLPMWPVHTWLPDAHVQAPTAGSVVLAGVLLKMGGYGMLRFSLPMFPDASAYFQPMMFAL 290
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKA 164
A+ A + L+ Q D+K++IAYS+++ +G++T+G+ + +IF +++H
Sbjct: 291 AVIAIIYTSLVAWRQTDMKKLIAYSSVAHMGFVTLGIFAFNETGIQGAIFQMLSHGLISG 350
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MPI ++ ++ VG P SGF +
Sbjct: 351 ALFLIVG-VVYDRMHTREIAAYGGLVGRMPIYAGFFMLFTMANVGLPGTSGFVGE 404
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 127/280 (45%), Gaps = 25/280 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L I+ L+ + L + I K+ I++S K+F+ ++ S +L + + G+
Sbjct: 146 LFYIFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTLIGSLLLLVAAIYMIQVAGSA 202
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
+ F V++ + V L + + KL + P H W+PD + A +++L+
Sbjct: 203 D----FEVLEQFAFDPGVQTWLWLAFLASFAVKLPMWPVHTWLPDAHVQAPTAGSVVLAG 258
Query: 721 TPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
L + +++ LP+ + +Q ++ LA+ ++I ++ A Q + K++IAY
Sbjct: 259 V----LLKMGGYGMLRFSLPMFPDASAYFQPMMFALAVIAIIYTSLVAWRQTDMKKLIAY 314
Query: 777 SSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK 836
SS+AHMG + I + + IF GL I GA +I+ + + +
Sbjct: 315 SSVAHMGFVTLGIFAFNETGIQGAIFQMLSHGL---------ISGALFLIVGVVYDRMH- 364
Query: 837 TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
T E+ + GL R P A M+F + G P T GF +
Sbjct: 365 TREIAAYGGLVGRMPIYAGFFMLFTMANVGLPGTSGFVGE 404
>gi|77463086|ref|YP_352590.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides 2.4.1]
gi|221638942|ref|YP_002525204.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides KD131]
gi|332557959|ref|ZP_08412281.1| NADH:ubiquinone oxidoreductase subunit M [Rhodobacter sphaeroides
WS8N]
gi|429208401|ref|ZP_19199653.1| NADH-ubiquinone oxidoreductase chain M [Rhodobacter sp. AKP1]
gi|77387504|gb|ABA78689.1| NADH dehydrogenase I chain M (NADH-ubiquinone oxidoreductase chain
13) [Rhodobacter sphaeroides 2.4.1]
gi|221159723|gb|ACM00703.1| Proton-translocating NADH-quinone oxidoreductase, chain M precursor
[Rhodobacter sphaeroides KD131]
gi|332275671|gb|EGJ20986.1| NADH:ubiquinone oxidoreductase subunit M [Rhodobacter sphaeroides
WS8N]
gi|428188656|gb|EKX57216.1| NADH-ubiquinone oxidoreductase chain M [Rhodobacter sp. AKP1]
Length = 513
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/390 (47%), Positives = 275/390 (70%), Gaps = 15/390 (3%)
Query: 214 SGFYSKDKKKIWIDYFN----IYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEY 269
+GF ++D +++ ++ + Y +G+DG+S+ F+ LT F+ + I + +++ ++ EY
Sbjct: 54 AGFDAQDTGFQFVESYDWIAGLQYKMGVDGISILFVMLTTFLMPLTIASAWEVETRVKEY 113
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFLIL L++G FCALD +LFY+FFEA LIP+F+IIG WGG +R YAA KFFLYT +G
Sbjct: 114 MIAFLILETLMLGVFCALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAAFKFFLYTFLG 173
Query: 330 SLLMLISMIYLYYISNKS-FNILSWHQLSITKIE----------QIWLFITFFIAFAIKI 378
S+LMLI+MI +YY + + L H+ S + Q LF+ FF +FA+K+
Sbjct: 174 SVLMLIAMIAMYYDAGTTDIPTLLSHEFSSGTMTLAGFQIVGGLQTLLFLAFFASFAVKM 233
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S S L+ +S
Sbjct: 234 PMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVFWMSA 293
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAM 498
I+I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF + + GAI QM+SH IS A+
Sbjct: 294 IAIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGAL 353
Query: 499 FISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAV 558
F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPGTSGFIGEF+ ++
Sbjct: 354 FLCVGVIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFIGEFLTLVGIF 413
Query: 559 KFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + ++ ++ +I SAAY L L + ++F
Sbjct: 414 QVNTWVAMVATSGVILSAAYGLWLYRRVVF 443
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + LS ++F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 291 MSAIAIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F LFL G +I + H ++I GGL MP + + ++ VG P SGF
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGF 402
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 142/307 (46%), Gaps = 45/307 (14%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I+ AA K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIY---AAFKFFLYTFLGSVLMLIAMIAMYYDA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGL------------SFKLGISPFHMWVPD 705
GT ++ ++ + + + + L+ I+ GL + K+ + P H W+PD
Sbjct: 189 GTTDIPTLLS----HEFSSGTMTLAGFQIVGGLQTLLFLAFFASFAVKMPMWPVHTWLPD 244
Query: 706 VY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLI 758
+ G+ ++ +LL L + ++ + + L PLV W ++ +++
Sbjct: 245 AHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVF-W------MSAIAIV 297
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 298 YTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMLSHGF- 348
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
I GA + + + + + T E+D + GL R P ALI M F + G P T GF +F
Sbjct: 349 ISGALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFIGEFL 407
Query: 879 IFEKIFE 885
IF+
Sbjct: 408 TLVGIFQ 414
>gi|260434163|ref|ZP_05788134.1| NADH-quinone oxidoreductase subunit m [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417991|gb|EEX11250.1| NADH-quinone oxidoreductase subunit m [Silicibacter
lacuscaerulensis ITI-1157]
Length = 513
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/392 (47%), Positives = 278/392 (70%), Gaps = 20/392 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P GF ++ + W + + Y +G+DG+S+ F+ LT FI + IL S ++ ++ EYM
Sbjct: 58 PSNPGFQMVEEAE-W--FMGLKYKMGVDGISVLFVLLTTFIMPLTILASWNVTDRVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS
Sbjct: 115 IAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGS 174
Query: 331 LLMLISMIYLY--------------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAI 376
+LML++M+ +Y S++SF++L H I Q LF+ FF +FA+
Sbjct: 175 VLMLVAMVAMYADAGTTDIAALMTHQFSSESFSVLGIH---IVGGMQTLLFLAFFASFAV 231
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITL 436
K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S ++L++ L
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDLVLWL 291
Query: 437 SLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISS 496
S I+++Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+
Sbjct: 292 SAIAVVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISA 351
Query: 497 AMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS 556
A+F+ +G +Y++M TR I +GG++ +P +++ F++F++AN LPGTSGFIGEF+ ++
Sbjct: 352 ALFLCVGVIYDRMHTRDIDAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTLMG 411
Query: 557 AVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + + ++ +IFSAAY+L L + ++F
Sbjct: 412 TFQVNTWVTAVAASGVIFSAAYALWLYRRVVF 443
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 105/176 (59%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 LSAIAVVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + ++ ++ VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMLFTMANVGLPGTSGF 402
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 41/305 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMVAMYADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ ++ F+V+ ++ I + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIAALMTHQFSSESFSVLGIH-IVGGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++ L L+ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDLVLWLSAIAVVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T ++D + GL R P AL+ M+F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTL 409
Query: 881 EKIFE 885
F+
Sbjct: 410 MGTFQ 414
>gi|424881070|ref|ZP_18304702.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WU95]
gi|392517433|gb|EIW42165.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WU95]
Length = 503
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHNWLGT-GIGYHVGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ L+ +S+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 MSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ +++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNT-WVAL 412
>gi|116251479|ref|YP_767317.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. viciae
3841]
gi|115256127|emb|CAK07208.1| putative NADH-ubiquinone oxidoreductase subunit M [Rhizobium
leguminosarum bv. viciae 3841]
Length = 503
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLIL +
Sbjct: 68 EKHNWLGT-GIGYHVGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS YF+ L+ +S+I+IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 MSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLA----YKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ ++ +++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNT-WVAL 412
>gi|154253653|ref|YP_001414477.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Parvibaculum lavamentivorans DS-1]
gi|154157603|gb|ABS64820.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Parvibaculum lavamentivorans DS-1]
Length = 514
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/360 (51%), Positives = 262/360 (72%), Gaps = 4/360 (1%)
Query: 231 IYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDG 289
I Y +G+DG+S+ F+ LT F+ IL S I ++ EYM AFL+L L+IG FCALD
Sbjct: 77 INYHMGVDGISMLFVILTTFLMPACILASWTSINTRVKEYMIAFLVLETLMIGVFCALDL 136
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNKSF 348
+LFY+FFE LIP+F+IIG WGG+ R YA+ KFFLYT +GS+LML++++ +Y+ S
Sbjct: 137 VLFYLFFEGGLIPMFLIIGVWGGARRIYASFKFFLYTFVGSVLMLLAIMAMYWSAGTTSI 196
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+L H Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 197 PVLLEHDFPAGM--QFWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG LRFSLP+FP AS + L+ LS+I+I+Y SL+A+VQ D+KKLIAYSS+AHMGF
Sbjct: 255 MGGYGFLRFSLPMFPVASADLAWLVFGLSVIAIVYTSLVALVQEDMKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QG I QM+SH +S A+F+ +G +Y+++ TR I+ +GG++N +P ++
Sbjct: 315 VTMGIFAANQQGVQGGIFQMLSHGWVSGALFLCVGVIYDRIHTREIAAYGGLVNRMPLYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F++F++AN LPGTSGFIGEF+ IL K N + + +T +I +A Y+L L + IIF
Sbjct: 375 VAFMVFTMANVGLPGTSGFIGEFLTILGVFKVNTWVAAIAATGVILAAGYALYLYRRIIF 434
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F +++ L+ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPVASADLAWLVFG 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q D+K++IAYS+++ +G++T+G+ GV IF +++H
Sbjct: 282 LSVIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVQG---GIFQMLSHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G +I + H ++I GGL MP+ + ++ ++ VG P SGF
Sbjct: 339 WVSGALFLCVG-VIYDRIHTREIAAYGGLVNRMPLYAVAFMVFTMANVGLPGTSGF 393
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 116/265 (43%), Gaps = 34/265 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S ML I +Y GT + + ++ + L
Sbjct: 165 ASFKFFLYTFVGSVLMLLAIMAMYWSAGTTSIPVLLE----HDFPAGMQFWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV---- 742
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFLRFSLPMFPVAS 272
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+ W ++ L++ +++ ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 ADLAW--LVFGLSVIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQ------ 324
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
G+F ++++ + F + ++ + T E+ + GL R P A+ M+F
Sbjct: 325 --QGVQGGIFQMLSHGWVSGALFLCVGVIYDRI--HTREIAAYGGLVNRMPLYAVAFMVF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F +F+
Sbjct: 381 TMANVGLPGTSGFIGEFLTILGVFK 405
>gi|190891299|ref|YP_001977841.1| NADH dehydrogenase subunit M [Rhizobium etli CIAT 652]
gi|190696578|gb|ACE90663.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli
CIAT 652]
Length = 503
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/373 (49%), Positives = 274/373 (73%), Gaps = 3/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLI 275
+ ++K W+ I Y +G+DG+S+ F+ L+ F+ +L S L I+K+L EYM AFLI
Sbjct: 64 FQMEQKFNWLGT-GIGYHVGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLI 122
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L ++IG F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML+
Sbjct: 123 LETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLL 182
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++ +Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+AP
Sbjct: 183 AIMAMYWQAGTT-DITALLAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 241
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LKLG YGL+RFSL +FP AS YF+ + LS+I+IIY SL+AM+Q DIK
Sbjct: 242 TAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIK 301
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+
Sbjct: 302 KLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREIN 361
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I S
Sbjct: 362 AYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILS 421
Query: 576 AAYSLCLSKNIIF 588
AAY+L L + +IF
Sbjct: 422 AAYALWLYRRVIF 434
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ ++ L + K+ + P H W+PD + Q + +L
Sbjct: 195 DITALLAY----KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ ++ + L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E++ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WVAL 412
>gi|209518749|ref|ZP_03267564.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. H160]
gi|209500791|gb|EEA00832.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. H160]
Length = 518
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/365 (49%), Positives = 274/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +GIDG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 69 WSPTFDIAWHVGIDGISLWLVALTALTTIIIVIASWESITQRTAQYFGAFLMLSGFMQGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGM+F+I FEATLIP++++IGT+G NR+YAA+KFF + +GSL+ML+S++YLY
Sbjct: 129 FTSLDGMMFFIAFEATLIPLYLLIGTYGQKNRTYAAVKFFFVSFLGSLMMLMSLLYLY-S 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + + Q +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 188 QTHSFDLAVWREAHLDMVPQALIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLK+G YGLLRF+LPI P AS++F+ ++ITLSL+++IY SL+A+VQ D+++L+AYS++
Sbjct: 248 --MLKIGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYSSLLALVQTDMRRLLAYSTV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ + GAI+QMIS+ ++S AM + G LY++ KT I+ +GG+ N
Sbjct: 306 AHMGLVTLGLFVFNRFGQSGAIVQMISYGVVSGAMLLCTGMLYDRTKTASIAEYGGVANT 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ A++FNF IG + +T LI SAAY+L +
Sbjct: 366 MPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAIAATTLILSAAYTLWMY 425
Query: 584 KNIIF 588
K +IF
Sbjct: 426 KRVIF 430
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMIG---MLKIGGYGLLRFALPIAPQASHFFAPMMIT 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V + +I ++++
Sbjct: 278 LSLVAVIYSSLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRFGQSGAIVQMISYGVVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + I GG+ MP ++ ++ +G P SGF +
Sbjct: 338 GAMLLCTG-MLYDRTKTASIAEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGE 392
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 129/280 (46%), Gaps = 39/280 (13%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + QKN + AA+K+F + L S ML + LY T + +L V
Sbjct: 145 LIPLYLLIGTYGQKNRTY---AAVKFFFVSFLGSLMMLMSLLYLYSQTHSFDLA----VW 197
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
+ +++ AL L + K+ + P H W+PDV+ GA+++I +L K+
Sbjct: 198 REAHLDMVPQALIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KIG 252
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ L++ LP+ + +++ L++ ++I ++ A+ Q + +R++AYS++AH
Sbjct: 253 GYG-----LLRFALPIAPQASHFFAPMMITLSLVAVIYSSLLALVQTDMRRLLAYSTVAH 307
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELD 841
MGL+ L +FN + + ++ G ++L ++T
Sbjct: 308 MGLVTL----------GLFVFNRFGQSGAIVQMISYGVVS--GAMLLCTGMLYDRTKTAS 355
Query: 842 I--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
I + G+ P A +M+F + G P T GF +F +
Sbjct: 356 IAEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMV 395
>gi|350552103|ref|ZP_08921310.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiorhodospira sibirica ATCC 700588]
gi|349795169|gb|EGZ48972.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thiorhodospira sibirica ATCC 700588]
Length = 518
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/394 (50%), Positives = 279/394 (70%), Gaps = 27/394 (6%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ +WI I+Y LG+DG+SL I LT+ I +++I+ + + +K+++A Y++AFL L+GL
Sbjct: 66 EQVVWIAPLGIHYALGVDGISLPLIVLTSLINVLVIIAAWEAVKQQVAHYLAAFLALAGL 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+ G F A D +LFY+ FEA LIP+F+IIG WGG NR YA +KFFLYT +GS+LMLI++IY
Sbjct: 126 MNGVFAAQDAILFYVLFEAMLIPMFLIIGIWGGPNRIYATLKFFLYTFLGSVLMLIALIY 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY SF + H + + QI +F+ FF AFA+KIP+WP+HTWLPDAHVEAPT GS
Sbjct: 186 LY-TQAGSFALTDLHAVPLGMTAQILIFLAFFGAFAVKIPMWPVHTWLPDAHVEAPTGGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFSLPI PDA+ L+IT SL++I+YI +A+ Q D+KKLIA
Sbjct: 245 VVLAAIMLKIGGYGFLRFSLPITPDAAAALDWLMITFSLVAIVYIGFVALAQQDMKKLIA 304
Query: 460 YSSIAHMGFVTLGIFML-------------------------TKISIQGAIIQMISHALI 494
YSSIAHMGFVTLG F++ +++ GA++QMISH LI
Sbjct: 305 YSSIAHMGFVTLGTFIIFMIYYGSHSAALPTALDSSAPLPQGAVLALSGAMVQMISHGLI 364
Query: 495 SSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
S+A+F +G LY+++ +R I+++GG++ +P F+ F++F++AN LPGTSGF+GE ++I
Sbjct: 365 SAALFFCVGALYSRLHSRQINDYGGVVQTMPWFAALFVLFAMANAGLPGTSGFVGELLVI 424
Query: 555 LSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
L++ K + I VL +T LI AAYSL L K ++F
Sbjct: 425 LASFKAHPLIAVLAATTLILGAAYSLWLIKRVVF 458
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 35/222 (15%)
Query: 30 PLAITANLKAFLINRIGAMA-KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMI 87
PL +TA + FL GA A K +P+HTWLPD+ +E PT S ++ AA M+ G +
Sbjct: 202 PLGMTAQILIFL-AFFGAFAVKIPMWPVHTWLPDAHVEAPTGGSVVL-AAIMLKIGGYGF 259
Query: 88 TRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL- 144
R S P+ + AL ++ ++ A ++G + + Q D+K++IAYS+++ +G++T+G
Sbjct: 260 LRFSLPITPDAAAALDWLMITFSLVAIVYIGFVALAQQDMKKLIAYSSIAHMGFVTLGTF 319
Query: 145 ---------------------------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINM 177
V A + ++ +++H A LF G++ +
Sbjct: 320 IIFMIYYGSHSAALPTALDSSAPLPQGAVLALSGAMVQMISHGLISAALFFCVGALYSRL 379
Query: 178 KHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
H++ I + GG+ + MP ++ ++ G P SGF +
Sbjct: 380 -HSRQINDYGGVVQTMPWFAALFVLFAMANAGLPGTSGFVGE 420
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 130/301 (43%), Gaps = 34/301 (11%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N I+++ +K+F+ L S ML + LY G+ L + V
Sbjct: 146 LIPMFLIIGIWGGPNRIYAT---LKFFLYTFLGSVLMLIALIYLYTQAGSFALTDLHAV- 201
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
+ + L L + K+ + P H W+PD + G S+++ ++
Sbjct: 202 ---PLGMTAQILIFLAFFGAFAVKIPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKIGGYG 258
Query: 726 LFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG-- 783
+ + L I ++W +++ ++ +++ A+ Q + K++IAYSSIAHMG
Sbjct: 259 F--LRFSLPITPDAAAALDW--LMITFSLVAIVYIGFVALAQQDMKKLIAYSSIAHMGFV 314
Query: 784 -LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCN------- 835
L F I I ++ + + DS + A+ GA ++ ++ + +
Sbjct: 315 TLGTFIIFMIYYGSHSAALPTALDSSAPLPQGAVLALSGA--MVQMISHGLISAALFFCV 372
Query: 836 -------KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ +++ + G+ Q PW A + ++F + AG P T GF + + F+
Sbjct: 373 GALYSRLHSRQINDYGGVVQTMPWFAALFVLFAMANAGLPGTSGFVGELLVILASFKAHP 432
Query: 889 I 889
+
Sbjct: 433 L 433
>gi|146278029|ref|YP_001168188.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides ATCC 17025]
gi|145556270|gb|ABP70883.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodobacter sphaeroides ATCC 17025]
Length = 513
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/405 (47%), Positives = 278/405 (68%), Gaps = 15/405 (3%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T T L+ L L G P +GF + WI + Y +G+DG+S+ F+ LT F+ +
Sbjct: 42 TSATFLVSLFLLAGFDPDNTGFQFVETYD-WIA--GLKYKMGVDGISILFVMLTTFLMPL 98
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
I + +++ ++ EYM AFL+L L+IG FCALD +LFY+FFEA LIP+F+IIG WGG
Sbjct: 99 TIASAWEVENRVKEYMIAFLVLETLMIGVFCALDLVLFYLFFEAGLIPMFLIIGIWGGKE 158
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWHQLS----------ITKIEQ 363
R YAA KFFLYT +GS+LMLI+MI +Y+ + + L H+ S I Q
Sbjct: 159 RIYAAFKFFLYTFLGSVLMLIAMIAMYFDAGTTDIPTLMAHEFSSGTLLIAGFQIVGGLQ 218
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP
Sbjct: 219 TLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFP 278
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQG 483
S S L++ LS I+I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF + + G
Sbjct: 279 VGSDLLSPLVLWLSAIAIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG 338
Query: 484 AIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
AI QM+SH IS A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPG
Sbjct: 339 AIFQMLSHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPG 398
Query: 544 TSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
TSGF+GEF+ ++ + N + ++ +T +I SAAY L L + ++F
Sbjct: 399 TSGFVGEFLTLVGIFQVNTWVAMVATTGVILSAAYGLWLYRRVVF 443
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + LS ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDLLSPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 405
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 37/303 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I+ AA K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIY---AAFKFFLYTFLGSVLMLIAMIAMYFDA 188
Query: 658 GTLELQSIFN--------VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-- 707
GT ++ ++ +I I + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLMAHEFSSGTLLIAGFQIVGGLQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQ 248
Query: 708 ---QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNV 762
G+ ++ +LL L + ++ + L PLV+ W L+ +++ ++
Sbjct: 249 APTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDLLSPLVL-W------LSAIAIVYTSL 301
Query: 763 SAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA 822
A+ Q + K++IAYSS+AHMG + I + D +F ++++ F I GA
Sbjct: 302 VALAQSDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMLSHGF-ISGA 352
Query: 823 FGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEK 882
+ + + + + T E+D + GL R P ALI M F + G P T GF +F
Sbjct: 353 LFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLVG 411
Query: 883 IFE 885
IF+
Sbjct: 412 IFQ 414
>gi|359407455|ref|ZP_09199932.1| proton-translocating NADH-quinone oxidoreductase, chain M [SAR116
cluster alpha proteobacterium HIMB100]
gi|356677494|gb|EHI49838.1| proton-translocating NADH-quinone oxidoreductase, chain M [SAR116
cluster alpha proteobacterium HIMB100]
Length = 498
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/379 (48%), Positives = 271/379 (71%), Gaps = 3/379 (0%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEY 269
P SG Y +++ WI I Y LGIDG+S+ FI L+ F+ + IL S I ++ +Y
Sbjct: 60 PNLSG-YQFEEQVDWIPGAGISYHLGIDGISMPFILLSTFLVPLSILASWQSITHRVRDY 118
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFL+L +++G F +LD ++FY+FFE LIP+F+I+G WGG+ R YAA KFFLYTL+G
Sbjct: 119 MIAFLVLETMMVGMFASLDMLMFYLFFEGVLIPMFLIVGVWGGAERVYAAFKFFLYTLLG 178
Query: 330 SLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPD 389
S+LML+ M+ +Y+ + + +I + + Q WLF+ FF +FA+K+P+WP+HTWLPD
Sbjct: 179 SVLMLVCMLVMYHQAGTT-DIPALAEFDFAPALQFWLFLGFFASFAVKVPMWPVHTWLPD 237
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GS+ILA ++LK+G YG +RFSLP+FP+AS F+ +I LS+I++IY SL+A+
Sbjct: 238 AHVQAPTAGSMILAGVLLKMGGYGFIRFSLPMFPEASDLFAPMIFVLSVIAVIYTSLVAL 297
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
Q D+KKLIAYSS+AHMGFVT+GIF + + I GA+ QMISH L+S+A+F +G +Y+++
Sbjct: 298 AQSDMKKLIAYSSVAHMGFVTIGIFSMNEQGIAGAMFQMISHGLVSAALFFCVGVVYDRL 357
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR IS +GG+++ +P ++ FF+ LA+ LPGTSGF+GE ++++ A + +L +
Sbjct: 358 HTREISAYGGVVDAMPRYATFFMFMMLASVGLPGTSGFVGEMLVLVGAWNRADWVAILAA 417
Query: 570 TALIFSAAYSLCLSKNIIF 588
T LI A Y L L + ++F
Sbjct: 418 TGLILGACYMLWLYRRVVF 436
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F E S+ +I
Sbjct: 225 KVPMWPVHTWLPDAHVQAPT-AGSMILAGVLLKMGGYGFIRFSLPMFPEASDLFAPMIFV 283
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q+D+K++IAYS+++ +G++T+G+ G++ ++F +++H
Sbjct: 284 LSVIAVIYTSLVALAQSDMKKLIAYSSVAHMGFVTIGIFSMNEQGIAG---AMFQMISHG 340
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LF G ++ + H ++I GG+ MP + +L+ VG P SGF +
Sbjct: 341 LVSAALFFCVG-VVYDRLHTREISAYGGVVDAMPRYATFFMFMMLASVGLPGTSGFVGE 398
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 127/296 (42%), Gaps = 37/296 (12%)
Query: 595 MISGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISI 652
M + ++L YL E L+ + L V + ++ AA K+F+ +L S ML + +
Sbjct: 132 MFASLDMLMFYLFFEGVLIPMFLIVGVWGGAERVY---AAFKFFLYTLLGSVLMLVCMLV 188
Query: 653 LYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASI 712
+Y GT ++ ++ + ++ L + K+ + P H W+PD + A
Sbjct: 189 MYHQAGTTDIPALAEF----DFAPALQFWLFLGFFASFAVKVPMWPVHTWLPDAHVQAPT 244
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQY 768
+++L+ L + I+ LP+ + ++ +L++ ++I ++ A+ Q
Sbjct: 245 AGSMILAGV----LLKMGGYGFIRFSLPMFPEASDLFAPMIFVLSVIAVIYTSLVALAQS 300
Query: 769 NFKRMIAYSSIAHMGLMLFSIIS-----IKTSHNNLIIFNSCDSGLFYIITYIFAILGAF 823
+ K++IAYSS+AHMG + I S I + +I + LF+ + ++ L
Sbjct: 301 DMKKLIAYSSVAHMGFVTIGIFSMNEQGIAGAMFQMISHGLVSAALFFCVGVVYDRL--- 357
Query: 824 GVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
T E+ + G+ P A M M + G P T GF + +
Sbjct: 358 ------------HTREISAYGGVVDAMPRYATFFMFMMLASVGLPGTSGFVGEMLV 401
>gi|75676066|ref|YP_318487.1| NADH dehydrogenase subunit M [Nitrobacter winogradskyi Nb-255]
gi|74420936|gb|ABA05135.1| NADH dehydrogenase subunit M [Nitrobacter winogradskyi Nb-255]
Length = 502
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/369 (50%), Positives = 268/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
++ W+ I Y +G+DG+SL F+ LT A + L II I +++ YM AFL+L L
Sbjct: 69 EQATWLAT-GIRYHMGVDGISLPFVILTTALMPLCIIASWKSITRRVPAYMMAFLVLETL 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA KFFLYTL+GS+LML++++
Sbjct: 128 MIGTFSALDLLLFYVFFEGGLIPMFLIIGIWGGPRRVYATFKFFLYTLLGSVLMLLAIMA 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + Q S+ Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 LYWNAGTT-DIPTLMQTSVPYNLQKWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 246
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAIMLK+G YG LRFSLP+FP AS+ F+ L+ LS ++I+Y SL+A++Q D+KKLIA
Sbjct: 247 VILAAIMLKMGGYGFLRFSLPMFPLASHDFAPLVFVLSAVAIVYTSLVALMQEDMKKLIA 306
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T I G + QM+SH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 307 YSSVAHMGFVTMGIFAGTMQGIHGGVFQMVSHGIVSGALFLCVGVVYDRMHTREIAAYGG 366
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F+IF++AN LPGTSGF+GEF+ ++ K + V + +I SAAY+
Sbjct: 367 LVNRMPLYALVFLIFTMANVGLPGTSGFVGEFLALIGTFKVSIPTAVAATLGVILSAAYA 426
Query: 580 LCLSKNIIF 588
L L + I+F
Sbjct: 427 LWLYRKIVF 435
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA M+ G + R S P+F L++ + ++F+
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVILAAIMLKMGGYGFLRFSLPMFPLASHDFAPLVFV 282
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
A+ + L+ ++Q D+K++IAYS+++ +G++T+G+ + +F +++H
Sbjct: 283 LSAVAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGIHGGVFQMVSHGIVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ + LI ++ VG P SGF +
Sbjct: 343 GALFLCVG-VVYDRMHTREIAAYGGLVNRMPLYALVFLIFTMANVGLPGTSGFVGE 397
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 120/263 (45%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A K+F+ +L S ML I LY GT ++ ++ ++ ++ + L
Sbjct: 166 ATFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMQ----TSVPYNLQKWAWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVILAA--------IMLKMGGYGFLRFSLPMFPLAS 273
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ +L+ +++ ++ A+ Q + K++IAYSS+AHMG + I + + +F
Sbjct: 274 HDFAPLVFVLSAVAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGIHGGVF 333
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P AL+ +IF
Sbjct: 334 QMVSHGI---------VSGALFLCVGVVYDRMH-TREIAAYGGLVNRMPLYALVFLIFTM 383
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 384 ANVGLPGTSGFVGEFLALIGTFK 406
>gi|431805616|ref|YP_007232517.1| NADH-ubiquinone oxidoreductase subunit M [Liberibacter crescens
BT-1]
gi|430799591|gb|AGA64262.1| NADH-ubiquinone oxidoreductase chain M [Liberibacter crescens BT-1]
Length = 500
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 272/365 (74%), Gaps = 3/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAF-ITLIIILISLDIKKKLAEYMSAFLILSGLIIGA 283
WID F Y+ LGIDG+S+ F+ L+AF I I+ S IK++ EY+ AFLIL ++IG
Sbjct: 71 WIDPFFDYH-LGIDGISVLFVILSAFLIPFCILASSASIKERFKEYVVAFLILESMVIGV 129
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LD +LFY+FFEA+L+P+FIIIG WGG +R YA+ KFF+YT +GS+LML++++ +Y+
Sbjct: 130 FVSLDIVLFYLFFEASLVPMFIIIGRWGGPDRVYASYKFFIYTFLGSVLMLLAIMAMYW- 188
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
++ ++L + + + Q WLF+ F +FA+KIP+WP+HTWLPDAHV+APT GSV+LA
Sbjct: 189 ETRTTDVLKLLEYNFSYNMQFWLFLAFLCSFAVKIPMWPIHTWLPDAHVQAPTAGSVVLA 248
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
+MLKLG YGLLRF LPIFP AS +F+ +I LS+I+IIY SL+AMVQ DIKKLIAYSS+
Sbjct: 249 GVMLKLGGYGLLRFCLPIFPLASDFFAPIIFVLSVIAIIYASLVAMVQEDIKKLIAYSSV 308
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG+VT+GIF +QG++ QM+SH +ISSA+F+ IG +Y+++ TR IS++GG+
Sbjct: 309 AHMGYVTMGIFSANIQGVQGSVFQMLSHGIISSALFLCIGIIYDRLHTRQISSYGGVAYS 368
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P ++V F++F++AN LPGTSGFIGEF+ ++ K + + +I SA+Y L +
Sbjct: 369 MPKYAVSFMVFTMANIGLPGTSGFIGEFLTLMGVFKVSSITALFAGIGIILSASYGLWVY 428
Query: 584 KNIIF 588
+ +IF
Sbjct: 429 RRVIF 433
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 103/173 (59%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A +++ A M+ G + + R P+F L++ + I+F+
Sbjct: 222 KIPMWPIHTWLPDAHVQAPT-AGSVVLAGVMLKLGGYGLLRFCLPIFPLASDFFAPIIFV 280
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q DIK++IAYS+++ +GY+T+G+ + S+F +++H
Sbjct: 281 LSVIAIIYASLVAMVQEDIKKLIAYSSVAHMGYVTMGIFSANIQGVQGSVFQMLSHGIIS 340
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G II + H + I + GG+ MP ++ ++ ++ +G P SGF
Sbjct: 341 SALFLCIG-IIYDRLHTRQISSYGGVAYSMPKYAVSFMVFTMANIGLPGTSGF 392
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 24/264 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSV-LALSLLL-IIV 688
A+ K+FI L S ML I +Y T T + V+KL N S + L L +
Sbjct: 164 ASYKFFIYTFLGSVLMLLAIMAMYWETRTTD------VLKLLEYNFSYNMQFWLFLAFLC 217
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCL--LPLVINW- 745
+ K+ + P H W+PD + A +++L+ + L + Y LL CL PL ++
Sbjct: 218 SFAVKIPMWPIHTWLPDAHVQAPTAGSVVLA---GVMLKLGGYGLLRFCLPIFPLASDFF 274
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
I+ +L++ ++I ++ A+ Q + K++IAYSS+AHMG + I S +F
Sbjct: 275 APIIFVLSVIAIIYASLVAMVQEDIKKLIAYSSVAHMGYVTMGIFSANIQGVQGSVFQML 334
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
G+ I + +F +G II + + T ++ + G+ P A+ M+F +
Sbjct: 335 SHGI--ISSALFLCIG----IIYDRLH----TRQISSYGGVAYSMPKYAVSFMVFTMANI 384
Query: 866 GFPPTIGFYAKFFIFEKIFETQKI 889
G P T GF +F +F+ I
Sbjct: 385 GLPGTSGFIGEFLTLMGVFKVSSI 408
>gi|27380016|ref|NP_771545.1| NADH dehydrogenase subunit M [Bradyrhizobium japonicum USDA 110]
gi|27353170|dbj|BAC50170.1| NADH dehydrogenase I chain M [Bradyrhizobium japonicum USDA 110]
Length = 502
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/369 (50%), Positives = 269/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT + I I+ S + ++ EYM AFLIL
Sbjct: 68 EKANWLAT-GITYHMGVDGISLPFVILTTALMPICIIASWKSVTSRVREYMMAFLILETF 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 LVGTFAALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYW-NGATTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LKLG YG LRFSLP+FP AS+ F+ LI TLS+I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VVLAAILLKLGGYGFLRFSLPMFPLASHDFAPLIFTLSVIAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTLQGVAGGVFQMISHGIVSGALFLCVGIVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + ST +I SA Y+
Sbjct: 366 LVNRMPLYALTFMVFTMANVGLPGTSGFVGEFMTLLGTFKTSIPTAFFASTGVILSACYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKLGGYGFLRFSLPMFPLASHDFAPLIFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSVIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTLQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I+ + H ++I GGL MP+ +T ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-IVYDRMHTREIAAYGGLVNRMPLYALTFMVFTMANVGLPGTSGFVGE 396
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 120/265 (45%), Gaps = 30/265 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY T ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNGATTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAILLKLGGYGFLRFSLPMFPLAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 HDFAPLIFTLSVIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------L 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+F +I++ + GA + + + + + T E+ + GL R P AL M+F
Sbjct: 325 QGVAGGVFQMISHGI-VSGALFLCVGIVYDRMH-TREIAAYGGLVNRMPLYALTFMVFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQ 887
+ G P T GF +F F+T
Sbjct: 383 ANVGLPGTSGFVGEFMTLLGTFKTS 407
>gi|402566142|ref|YP_006615487.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia cepacia GG4]
gi|402247339|gb|AFQ47793.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia cepacia GG4]
Length = 509
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/410 (45%), Positives = 295/410 (71%), Gaps = 12/410 (2%)
Query: 188 GLYKYMPITCITSLIGLLSLVGA--PFFSGFYSKD------KKKIWIDYFNIYYFLGIDG 239
G +++ T + +L+G L+ + A P +GF S + + W+ FN + +GIDG
Sbjct: 25 GSDRHLQRTRLIALVGALAGLAAVVPLVAGFDSHSAAMQFAESRDWLGAFNAGWRVGIDG 84
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
SLW + LTAF TL++++ S + + ++A+Y ++FLILSGL++G F A DG+LF+IFFEA
Sbjct: 85 ASLWLVVLTAFTTLVVVIASWESVTVRVAQYYASFLILSGLMVGVFVAQDGLLFFIFFEA 144
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
TLIP++++IGTWG +R YAA+KFF + GSLL+L++M+YLY S+ +F++ +W L +
Sbjct: 145 TLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLYAKSH-TFDMNAWRTLQL 203
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+
Sbjct: 204 GFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFA 261
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LPI PDAS++F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG VTLG+F+ +
Sbjct: 262 LPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNR 321
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
I ++GAI+Q++S+ ++ AM + + L ++ K R I+ +GG+ V+P F+ F ++F++AN
Sbjct: 322 IGVEGAIVQLVSYGFVAGAMLLCVSVLVDRTKQREIAAYGGVAGVMPRFATFTLLFAMAN 381
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEFM+I+ A++FNF IG + + LI SA+Y+L + K ++F
Sbjct: 382 VGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLILSASYTLWMVKRVVF 431
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L S++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-SVLVDRTKQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q + +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T + +I + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVSVLVDRTKQREIAAYGGVAGVMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A ++F + G P T GF +F +
Sbjct: 371 ATFTLLFAMANVGLPGTSGFVGEFMV 396
>gi|126736046|ref|ZP_01751790.1| NADH-quinone oxidoreductase chain M [Roseobacter sp. CCS2]
gi|126714603|gb|EBA11470.1| NADH-quinone oxidoreductase chain M [Roseobacter sp. CCS2]
Length = 513
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/392 (47%), Positives = 277/392 (70%), Gaps = 20/392 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF + ++ W+ + Y +G+DG+S+ F+ LT F+ ++I D+K ++ EYM
Sbjct: 58 PADTGFQMVETRE-WL--LGLQYKMGVDGISILFVMLTTFLMPLVIASCWDVKARVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFLIL L++G F ALD +LFY+FFEA LIP+F+IIG WGG NR YA+ KFFLYT +GS
Sbjct: 115 IAFLILETLMLGVFLALDLVLFYLFFEAGLIPMFLIIGIWGGKNRIYASFKFFLYTFLGS 174
Query: 331 LLMLISMIYLYYIS--------------NKSFNILSWHQLSITKIEQIWLFITFFIAFAI 376
+LML++M+ ++ + ++F+IL + I Q L++ FF +FA+
Sbjct: 175 VLMLVAMVAMFSAAGTTDIPTLMAFTFETENFSILG---VQIIGGMQTLLWLAFFASFAV 231
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITL 436
K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S L++TL
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMGPLVLTL 291
Query: 437 SLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISS 496
S I+I+Y SL+A+VQ D+KKLIAYSS+AHMG+VT+GIF + + I GAI QMISH IS
Sbjct: 292 SAIAIVYTSLVALVQDDMKKLIAYSSVAHMGYVTMGIFAVNQQGIDGAIFQMISHGFISG 351
Query: 497 AMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS 556
A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPGTSGF+GEF++++
Sbjct: 352 ALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLVLMG 411
Query: 557 AVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N I + ++ +I SAAY+L L + ++F
Sbjct: 412 IFQVNTWIALFATSGVILSAAYALWLYRRVVF 443
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + + ++L
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMGPLVLT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q+D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 291 LSAIAIVYTSLVALVQDDMKKLIAYSSVAHMGYVTMGIFAVNQQGIDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 405
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 143/313 (45%), Gaps = 42/313 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I KN I++S K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKNRIYAS---FKFFLYTFLGSVLMLVAMVAMFSAA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ ++ N S+L + + L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLM-AFTFETENFSILGVQIIGGMQTLLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ +++ L L+ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMGPLVLTLSAIAIVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I ++ D +F +I++ F I
Sbjct: 300 SLVALVQDDMKKLIAYSSVAHMGYVTMGIFAVNQ--------QGIDGAIFQMISHGF-IS 350
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA + + + + + T E+D + GL R P ALI M F + G P T GF +F +
Sbjct: 351 GALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLVL 409
Query: 881 EKIFETQKIWLLL 893
IF+ W+ L
Sbjct: 410 MGIFQVNT-WIAL 421
>gi|405381798|ref|ZP_11035621.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF142]
gi|397321685|gb|EJJ26100.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF142]
Length = 503
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/360 (50%), Positives = 270/360 (75%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ FI L+ F+ +L S L I+K+L EYM AFLIL +++G F +LD
Sbjct: 76 GIGYHVGVDGISMLFIILSTFLMPFCVLASWLSIEKRLKEYMIAFLILEVMMVGVFVSLD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE LIP+F+IIG WGG+NR YA+ KFFLYTL+GS+LML++++ +Y+ + +
Sbjct: 136 IVLFYVFFEGGLIPMFLIIGVWGGANRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTT- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK
Sbjct: 195 DITALLAYKFPPAMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YGL+RFS+ +FP AS +F+ L+ LS+I+IIY SL+AM+Q DIKKLIAYSS+AHMG+
Sbjct: 255 LGGYGLIRFSIGMFPVASDHFAPLVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG++N +P ++
Sbjct: 315 VTMGIFAANAQGLQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREIAAYGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V F++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+L L + +IF
Sbjct: 375 VAFMVFTMANVGLPGTSGFIGEFLTLIGVFRANTWVALFAATGVILSAAYALWLYRRVIF 434
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSIGMFPVASDHFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ SIF +++H
Sbjct: 282 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANAQGLQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VVYDRTHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGF 393
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 125/285 (43%), Gaps = 20/285 (7%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + N +++S K+F+ +L S ML I +Y GT ++ ++
Sbjct: 147 LIPMFLIIGVWGGANRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTTDITALL-AY 202
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFV 728
K + L L+ + K+ + P H W+PD + Q + +L KL +
Sbjct: 203 KFPPAMQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 259
Query: 729 IIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFS 788
+I R I ++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG +
Sbjct: 260 LI-RFSIGMFPVASDHFAPLVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMG 318
Query: 789 IISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQ 848
I + IF G+ + GA + + + + + T E+ + GL
Sbjct: 319 IFAANAQGLQGSIFQMLSHGI---------VSGALFLCVGVVYDRTH-TREIAAYGGLVN 368
Query: 849 RNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
P A+ M+F + G P T GF +F +F W+ L
Sbjct: 369 NMPKYAVAFMVFTMANVGLPGTSGFIGEFLTLIGVFRANT-WVAL 412
>gi|126461958|ref|YP_001043072.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides ATCC 17029]
gi|126103622|gb|ABN76300.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodobacter sphaeroides ATCC 17029]
Length = 513
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/390 (47%), Positives = 274/390 (70%), Gaps = 15/390 (3%)
Query: 214 SGFYSKDKKKIWIDYFN----IYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEY 269
+GF ++D +++ ++ + Y +G+DG+S+ F+ LT F+ I + +++ ++ EY
Sbjct: 54 AGFDAQDTGFQFVESYDWIAGLQYKMGVDGISILFVMLTTFLMPFTIASAWEVETRVKEY 113
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFLIL L++G FCALD +LFY+FFEA LIP+F+IIG WGG +R YAA KFFLYT +G
Sbjct: 114 MIAFLILETLMLGVFCALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAAFKFFLYTFLG 173
Query: 330 SLLMLISMIYLYYISNKS-FNILSWHQLSITKIE----------QIWLFITFFIAFAIKI 378
S+LMLI+MI +YY + + L H+ S + Q LF+ FF +FA+K+
Sbjct: 174 SVLMLIAMIAMYYDAGTTDIPTLLSHEFSSGTMTLAGFQIVGGLQTLLFLAFFASFAVKM 233
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S S L+ +S
Sbjct: 234 PMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVFWMSA 293
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAM 498
I+I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF + + GAI QM+SH IS A+
Sbjct: 294 IAIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGAL 353
Query: 499 FISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAV 558
F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPGTSGFIGEF+ ++
Sbjct: 354 FLCVGVIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFIGEFLTLVGIF 413
Query: 559 KFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + ++ ++ +I SAAY L L + ++F
Sbjct: 414 QVNTWVAMVATSGVILSAAYGLWLYRRVVF 443
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + LS ++F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 291 MSAIAIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F LFL G +I + H ++I GGL MP + + ++ VG P SGF
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGF 402
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 142/307 (46%), Gaps = 45/307 (14%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I+ AA K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIY---AAFKFFLYTFLGSVLMLIAMIAMYYDA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGL------------SFKLGISPFHMWVPD 705
GT ++ ++ + + + + L+ I+ GL + K+ + P H W+PD
Sbjct: 189 GTTDIPTLLS----HEFSSGTMTLAGFQIVGGLQTLLFLAFFASFAVKMPMWPVHTWLPD 244
Query: 706 VY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLI 758
+ G+ ++ +LL L + ++ + + L PLV W ++ +++
Sbjct: 245 AHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVF-W------MSAIAIV 297
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 298 YTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMLSHGF- 348
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
I GA + + + + + T E+D + GL R P ALI M F + G P T GF +F
Sbjct: 349 ISGALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFIGEFL 407
Query: 879 IFEKIFE 885
IF+
Sbjct: 408 TLVGIFQ 414
>gi|365890983|ref|ZP_09429459.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. STM 3809]
gi|365333099|emb|CCE01990.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. STM 3809]
Length = 503
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 268/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + I+ + +L EYM AFLIL L
Sbjct: 69 EKSNWLAA-GISYHMGVDGISLPFVILTTALMPFCIVASWKSVTNRLREYMMAFLILETL 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 128 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 LYWNAGTT-DIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 246
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS ++IIY SL+A++Q DIKKLIA
Sbjct: 247 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAVAIIYTSLVALMQEDIKKLIA 306
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 307 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 366
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SAAY+
Sbjct: 367 LVNRMPIYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAAYA 426
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 427 LWLYRKVVF 435
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + +++
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWT 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ A+ + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 283 LSAVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MPI + ++ ++ VG P SGF +
Sbjct: 340 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPIYALVFMVFTMANVGLPGTSGFVGE 397
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 32/264 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 166 ASFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 281 -WT-----LSAVAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGT--------MQ 326
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFM 861
G+F +I++ I+ G + L ++ T E+ + GL R P AL+ M+F
Sbjct: 327 GVAGGVFQMISH--GIVS--GALFLCVGVVYDRMHTREIAAYGGLVNRMPIYALVFMVFT 382
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 383 MANVGLPGTSGFVGEFMTLLGTFK 406
>gi|259419140|ref|ZP_05743057.1| NADH-quinone oxidoreductase subunit m [Silicibacter sp. TrichCH4B]
gi|259345362|gb|EEW57216.1| NADH-quinone oxidoreductase subunit m [Silicibacter sp. TrichCH4B]
Length = 521
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/382 (48%), Positives = 270/382 (70%), Gaps = 19/382 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+++ WI F + Y +G+DG+S+ F+ LT F+ + IL S + ++ EYM AFL+L L+
Sbjct: 67 EERAWI--FGLKYKMGVDGISVLFVLLTTFVMPLTILASWSVTTRVKEYMIAFLLLETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT GS+LML++M+ +
Sbjct: 125 LGVFMALDMVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFFGSVLMLVAMVAM 184
Query: 341 YY--------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
Y+ S S N+L H L Q LF+ FF +FA+K+P+WP+HTW
Sbjct: 185 YFDAGTTDIVKLLAHEFSYASMNVLGIHVLGGM---QTLLFLAFFASFAVKMPMWPVHTW 241
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S +++I+ +S I+I+Y SL
Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILWMSAIAIVYTSL 301
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+AMVQ D+KKLIAYSS+AHMGFVT+GIF + + GAI QM+SH IS+A+F+ +G +Y
Sbjct: 302 VAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFISAALFLCVGVIY 361
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++M TR I +GG++ +P +++ F+ F++ N LPGTSGFIGEF+ ++ + N + +
Sbjct: 362 DRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMGVFQENTWVAL 421
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+ +T +IFSA Y+L L + ++F
Sbjct: 422 VATTGVIFSACYALWLYRRVVF 443
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 MSAIAIVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + + + VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGF 402
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 139/313 (44%), Gaps = 40/313 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+++ YL E L+ + L + I K+ I++S K+F+ S ML + +Y
Sbjct: 132 DMVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFFGSVLMLVAMVAMYFDA 188
Query: 658 GTLELQSI----FNVIKLNNINCSVLA----LSLLLIIVGLSFKLGISPFHMWVPDVYQG 709
GT ++ + F+ +N + VL L L + K+ + P H W+PD +
Sbjct: 189 GTTDIVKLLAHEFSYASMNVLGIHVLGGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQ 248
Query: 710 ASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGN 761
A T + L I+ ++ ++ LP+ +++ L ++ +++ +
Sbjct: 249 AP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILWMSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 301 LVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGVDGAIFQMLSHGFISAA 352
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
F + ++ + T ++D + GL R P AL+ M F G P T GF +F
Sbjct: 353 LFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLM 410
Query: 882 KIFETQKIWLLLL 894
+F+ + W+ L+
Sbjct: 411 GVFQ-ENTWVALV 422
>gi|254487062|ref|ZP_05100267.1| NADH-quinone oxidoreductase chain m [Roseobacter sp. GAI101]
gi|214043931|gb|EEB84569.1| NADH-quinone oxidoreductase chain m [Roseobacter sp. GAI101]
Length = 518
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 310/477 (64%), Gaps = 43/477 (9%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T LI L L P +GF D+ WI + Y +G+DG+S+ F+ LT F+ +
Sbjct: 43 TSVTFLISLFILFDFDPADTGFQFVDEAT-WI--MGLQYRMGVDGISILFVMLTTFMMPL 99
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
+I S ++ ++ EYM AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG+N
Sbjct: 100 VIAASWNVDTRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGAN 159
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS----------FNILSWHQLSITKIE-- 362
R YA+ KFFLYT +GS+LML++M+ +Y + + N + ++ I
Sbjct: 160 RIYASFKFFLYTFLGSVLMLVAMVAMYADAGTTCIGGCEVSLLTNTFASETFTVAGISVV 219
Query: 363 ---QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSL 419
Q +F+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSL
Sbjct: 220 GGMQTLMFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSL 279
Query: 420 PIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI 479
P+FP S + ++ +S I+I+Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF +
Sbjct: 280 PMFPVGSDVIAPWVLWMSAIAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFTFNQQ 339
Query: 480 SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANC 539
+ GAI QM+SH IS+A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN
Sbjct: 340 GLDGAIFQMVSHGFISAALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANV 399
Query: 540 SLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIM---- 595
LPGTSGF+GEF+ +++ + N + + +T +IFSAAY+L L + + V+G +I
Sbjct: 400 GLPGTSGFVGEFLTLMAIFQVNTWVAAVATTGVIFSAAYALWLYRRV--VMGDLIKESLK 457
Query: 596 ----ISGNN------------LLSIY--LGLELMSLTLCVLIASQKNNIFSSEAAIK 634
+SG LL IY L L+++ ++ L+AS + ++ AA++
Sbjct: 458 TITDMSGRERWIFAPLVVMTLLLGIYPALVLDIIGPSVTALVASYDTALEAAGAAVQ 514
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + S+ +L+
Sbjct: 237 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVIAPWVLW 295
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ +IF +++H F
Sbjct: 296 MSAIAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMVSHGFIS 355
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 356 AALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGE 410
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 49/311 (15%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ L S ML + +Y
Sbjct: 133 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVAMYADA 189
Query: 658 GT-----LELQSIFNVIKLNNINCSVLA-------LSLLLIIVGLSFKLGISPFHMWVPD 705
GT E+ + N + ++ L L + K+ + P H W+PD
Sbjct: 190 GTTCIGGCEVSLLTNTFASETFTVAGISVVGGMQTLMFLAFFASFAVKMPMWPVHTWLPD 249
Query: 706 VYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPL-------VINWQKILLILAI 754
+ A T + L I+ ++ ++ LP+ + W +L ++
Sbjct: 250 AHVQAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVIAPW---VLWMSA 298
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+++ ++ A+ Q + K++IAYSS+AHMG + I + D +F +++
Sbjct: 299 IAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFTFNQ--------QGLDGAIFQMVS 350
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ F F + ++ + T E+D + GL R P AL+ M F + G P T GF
Sbjct: 351 HGFISAALFLCVGVIYDRM--HTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFV 408
Query: 875 AKFFIFEKIFE 885
+F IF+
Sbjct: 409 GEFLTLMAIFQ 419
>gi|399036628|ref|ZP_10733634.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF122]
gi|398065797|gb|EJL57413.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF122]
Length = 503
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/369 (49%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ LT F+ +L S L I+K+L +YM AFLIL +
Sbjct: 68 EKHGWLGT-GISYHLGVDGISMLFVILTTFLMPFCVLASWLSIEKRLKDYMIAFLILEVM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DIQALLAYQFPPQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS +F+ L+ LS+I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPVASEFFAPLVFALSVIAIIYTSLVALMQDDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANAQGLQGSIFQMLSHGIVSGALFLCVGVIYDRTHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASEFFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+D+K++IAYS+++ +GY+T+G+ SIF +++H
Sbjct: 282 LSVIAIIYTSLVALMQDDMKKLIAYSSVAHMGYVTMGIFAANAQGLQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++Q++ + L + K+ + P H W+PD + Q + +L
Sbjct: 195 DIQALLA----YQFPPQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ + ++ L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPVASEFFAPLVFALSVIAIIYTSLVALMQDDMKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANAQGLQGSIFQMLSHGI---------VSGALFLCVGVIYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E+ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WVAL 412
>gi|456354970|dbj|BAM89415.1| NADH dehydrogenase subunit M [Agromonas oligotrophica S58]
Length = 502
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 267/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + I+ + +L EYM AFLIL L
Sbjct: 68 EKSNWLAA-GISYHMGVDGISLPFVILTTALMPFCIVASWKSVTNRLREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYWNAGTT-DIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q DIKKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFTLSAIAIIYTSLVALMQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGIVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 366 LVNRMPVYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSACYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I+ + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-IVYDRMHTREIAAYGGLVNRMPVYALVFMVFTMANVGLPGTSGFVGE 396
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVF 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 281 T-------LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGT--------MQ 325
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+F +I++ + GA + + + + + T E+ + GL R P AL+ M+F +
Sbjct: 326 GVAGGVFQMISHGI-VSGALFLCVGIVYDRMH-TREIAAYGGLVNRMPVYALVFMVFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F F+
Sbjct: 384 NVGLPGTSGFVGEFMTLLGTFK 405
>gi|148255901|ref|YP_001240486.1| NADH dehydrogenase subunit M [Bradyrhizobium sp. BTAi1]
gi|146408074|gb|ABQ36580.1| NADH dehydrogenase subunit M [Bradyrhizobium sp. BTAi1]
Length = 502
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 267/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + I+ + +L EYM AFLIL L
Sbjct: 68 EKSNWLAA-GISYHMGVDGISLPFVILTTALMPFCIVASWKSVTNRLREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYWNAGTT-DIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q DIKKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 366 LVNRMPIYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAGYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MPI + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPIYALVFMVFTMANVGLPGTSGFVGE 396
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 32/264 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 280 -WT-----LSAIAIIYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGT--------MQ 325
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFM 861
G+F +I++ I+ G + L ++ T E+ + GL R P AL+ M+F
Sbjct: 326 GVAGGVFQMISH--GIVS--GALFLCVGVVYDRMHTREIAAYGGLVNRMPIYALVFMVFT 381
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 382 MANVGLPGTSGFVGEFMTLLGTFK 405
>gi|346994676|ref|ZP_08862748.1| NADH:ubiquinone oxidoreductase subunit M [Ruegeria sp. TW15]
Length = 514
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/434 (44%), Positives = 294/434 (67%), Gaps = 20/434 (4%)
Query: 170 AGSIIINMKHNQDI---RNMGGLYKYMPITCITSLIGLLSLVG-APFFSGFYSKDKKKIW 225
A I+ H +D+ RN + + T +T L+ + G P +GF ++ + W
Sbjct: 15 AAGILALFLHGEDVAAQRN--AKWVALVATTVTFLVSIGIYTGFDPSNTGFQMVEEGE-W 71
Query: 226 IDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFC 285
+ + Y +G+DG+S+ F+ LT FI + IL S ++ ++ EYM AFL+L L++G F
Sbjct: 72 L--LGLKYKMGVDGISVLFVLLTTFIMPLTILASWNVTDRVKEYMIAFLLLETLMLGVFM 129
Query: 286 ALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISN 345
ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS+LML++M+ +Y +
Sbjct: 130 ALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMVAMYADAG 189
Query: 346 KS-FNILSWHQLS----------ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
+ L HQ S I Q +F+ FF +FA+K+P+WP+HTWLPDAHV+A
Sbjct: 190 TTDIEALMSHQFSSEGFSVLGFYIVGGMQTLMFLAFFASFAVKMPMWPVHTWLPDAHVQA 249
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSV+LAAI+LK+G YG LRFSLP+FP S +++++ +S I+++Y SL+A+VQ D+
Sbjct: 250 PTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDVVLWMSAIAVVYTSLVALVQEDM 309
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+A+F+ +G +Y++M TR I
Sbjct: 310 KKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYDRMHTRDI 369
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+GG++ +P +++ F++F++AN LPGTSGFIGEF+ ++ A + N + + +T +IF
Sbjct: 370 EAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTLMGAFQVNTWVTAVAATGVIF 429
Query: 575 SAAYSLCLSKNIIF 588
SA Y+L L + ++F
Sbjct: 430 SAGYALWLYRRVVF 443
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 105/176 (59%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDVVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 MSAIAVVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + ++ ++ VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIEAYGGLVIRMPAYALVFMLFTMANVGLPGTSGF 402
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 137/305 (44%), Gaps = 41/305 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMVAMYADA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLA---------LSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT +++++ + + ++ SVL L L + K+ + P H W+PD +
Sbjct: 189 GTTDIEALMSH-QFSSEGFSVLGFYIVGGMQTLMFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV----INWQKILLILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDVVLWMSAIAVVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T +++ + GL R P AL+ M+F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIEAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTL 409
Query: 881 EKIFE 885
F+
Sbjct: 410 MGAFQ 414
>gi|254252013|ref|ZP_04945331.1| NADH dehydrogenase subunit 4 [Burkholderia dolosa AUO158]
gi|124894622|gb|EAY68502.1| NADH dehydrogenase subunit 4 [Burkholderia dolosa AUO158]
Length = 506
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/442 (42%), Positives = 304/442 (68%), Gaps = 21/442 (4%)
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
F L++ A + +LF G+ ++ ++ R + + + +L+GL ++V P
Sbjct: 4 FPLLSLAIWAPILF---GTCLLRAGSDRHAR------RTRVVALVGALVGLATVV--PLV 52
Query: 214 SGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKL 266
+GF +++ W+ F+ + +GIDG S+W + LTAF T++++L S I ++
Sbjct: 53 AGFDPHSAAMQFVERRDWLAAFDAGWRVGIDGASIWLVALTAFTTVVVVLASWTSITVRV 112
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
A+Y ++FLILSGL++G F A DG+LF++FFEATLIP++++IGTWG +R +AA+KFF +
Sbjct: 113 AQYYASFLILSGLMVGVFVAQDGLLFFVFFEATLIPLYLLIGTWGREHRVHAAVKFFFVS 172
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
GSLL+L +M+YLY S+ +F++ +W L Q+ +F+ FF AFA+K+P+WP+HTW
Sbjct: 173 FAGSLLLLAAMLYLYAKSH-TFDMSAWRTLQFGFAPQLLVFVGFFAAFAVKVPMWPVHTW 231
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
L D + + PT +++LA MLKLG YG LRF+LPI PDAS++F+ +I LSL +I+Y SL
Sbjct: 232 LRDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASL 289
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
IA+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q++S+ ++ AM + + L
Sbjct: 290 IALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSVLV 349
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
+ K R I+ +GG+ V+P F+ F ++F++AN LPGTSGF+GEFM+I+ A++FNF IG
Sbjct: 350 ERTKEREIAAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGA 409
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+ + LI SAAY+L + K ++F
Sbjct: 410 IAALTLILSAAYTLWMLKRVVF 431
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L S+++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-SVLVERTKEREIAAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 54/219 (24%)
Query: 684 LLIIVGL----SFKLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKL 724
LL+ VG + K+ + P H W+ DVY GA++++ +L L TP
Sbjct: 209 LLVFVGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDA 268
Query: 725 SLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGL 784
S F P VI L++F+++ ++ A+ Q + +++AYS++AHMG+
Sbjct: 269 SHF----------FAPAVIA-------LSLFAIVYASLIALAQTDLGKLLAYSTVAHMGI 311
Query: 785 MLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI 842
+ L +FN + + +++Y F G ++L + +T E +I
Sbjct: 312 VTL----------GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVSVLVERTKEREI 357
Query: 843 --FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ G+ P A ++F + G P T GF +F +
Sbjct: 358 AAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMV 396
>gi|384218467|ref|YP_005609633.1| NADH dehydrogenase I subunit M [Bradyrhizobium japonicum USDA 6]
gi|354957366|dbj|BAL10045.1| NADH dehydrogenase I chain M [Bradyrhizobium japonicum USDA 6]
Length = 502
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 268/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + L I+ + ++ EYM AFLIL
Sbjct: 68 EKANWLAT-GITYHMGVDGISLPFVILTTALMPLCIMASWKSVTSRVREYMIAFLILETF 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 LVGTFAALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYW-NGSTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LKLG YG LRFSLP+FP AS+ F+ LI TLS I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VVLAAILLKLGGYGFLRFSLPMFPLASHDFAPLIFTLSAIAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRLHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + +T +I SA Y+
Sbjct: 366 LVNRMPLYALTFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATTGVILSAGYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKLGGYGFLRFSLPMFPLASHDFAPLIFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ +T ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRLHTREIAAYGGLVNRMPLYALTFMVFTMANVGLPGTSGFVGE 396
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 34/265 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY T ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNGSTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ +L ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAILLKLGGYGFLRFSLPMFPLAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 HDFAPLIFTLSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------M 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIF 860
G+F +I++ I+ G + L ++ T E+ + GL R P AL M+F
Sbjct: 325 QGVAGGVFQMISH--GIVS--GALFLCVGVVYDRLHTREIAAYGGLVNRMPLYALTFMVF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 381 TMANVGLPGTSGFVGEFMTLLGTFK 405
>gi|294083723|ref|YP_003550480.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Candidatus Puniceispirillum marinum IMCC1322]
gi|292663295|gb|ADE38396.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Candidatus Puniceispirillum marinum IMCC1322]
Length = 501
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/374 (48%), Positives = 267/374 (71%), Gaps = 4/374 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y ++ W+ I Y +G+DG+S+ F+ L+ F+T + +L S I ++ EYM AFL+
Sbjct: 65 YQFEEFAEWLPNTGINYHMGVDGISMPFVLLSTFLTPLAVLASWRAISHRVREYMIAFLV 124
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L ++IG F +LD ++FY+FFEA LIP+F+IIG WGG+ R YAA KFFL+TL+GS+LML+
Sbjct: 125 LETMMIGMFVSLDMLMFYLFFEAVLIPMFLIIGIWGGARRVYAAFKFFLFTLLGSVLMLV 184
Query: 336 SMIYLYYISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
M+ +Y + + +L+ H Q WLF+ FF +FA+K+P+WP+HTWLPDAHVEA
Sbjct: 185 CMLAMYVQTGTTDIPMLTAHSFGTGM--QFWLFLGFFASFAVKVPMWPVHTWLPDAHVEA 242
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GS+ILA ++LK+G YG LRFSLP+FP AS F+ +I LS+I++IY SL+A+ Q D+
Sbjct: 243 PTAGSMILAGVLLKMGGYGFLRFSLPMFPHASELFAPVIFALSVIAVIYTSLVALAQSDM 302
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KK+IAYSS+AHMGFVT+GIF T+ I GA+ QMISH L+S+A+F +G +Y+++ TR I
Sbjct: 303 KKMIAYSSVAHMGFVTIGIFTFTEQGIAGAMFQMISHGLVSAALFFCVGVVYDRLHTREI 362
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+GG+ V+P ++VFF+ LA+ LPGTSGF+GE ++++ A K + + T+T L+
Sbjct: 363 DAYGGVAKVMPRYAVFFMFMMLASVGLPGTSGFVGEMLVLVGAWKASTWVAFFTATGLVL 422
Query: 575 SAAYSLCLSKNIIF 588
A Y L L + ++F
Sbjct: 423 GATYMLWLYRRVMF 436
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ + ++F
Sbjct: 225 KVPMWPVHTWLPDAHVEAPT-AGSMILAGVLLKMGGYGFLRFSLPMFPHASELFAPVIFA 283
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q+D+K++IAYS+++ +G++T+G+ G++ ++F +++H
Sbjct: 284 LSVIAVIYTSLVALAQSDMKKMIAYSSVAHMGFVTIGIFTFTEQGIAG---AMFQMISHG 340
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
A LF G ++ + H ++I GG+ K MP + + +L+ VG P SGF +
Sbjct: 341 LVSAALFFCVG-VVYDRLHTREIDAYGGVAKVMPRYAVFFMFMMLASVGLPGTSGFVGEM 399
Query: 221 -------KKKIWIDYFN 230
K W+ +F
Sbjct: 400 LVLVGAWKASTWVAFFT 416
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 116/262 (44%), Gaps = 40/262 (15%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + +Y TGT ++ ++ ++ + L
Sbjct: 167 AAFKFFLFTLLGSVLMLVCMLAMYVQTGTTDIP----MLTAHSFGTGMQFWLFLGFFASF 222
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A +++L+ ++ ++ ++ LP+ +
Sbjct: 223 AVKVPMWPVHTWLPDAHVEAPTAGSMILAG--------VLLKMGGYGFLRFSLPMFPHAS 274
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS-----IKTSHN 797
+ ++ L++ ++I ++ A+ Q + K+MIAYSS+AHMG + I + I +
Sbjct: 275 ELFAPVIFALSVIAVIYTSLVALAQSDMKKMIAYSSVAHMGFVTIGIFTFTEQGIAGAMF 334
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
+I + LF+ + ++ L T E+D + G+ + P A+
Sbjct: 335 QMISHGLVSAALFFCVGVVYDRL---------------HTREIDAYGGVAKVMPRYAVFF 379
Query: 858 MIFMFSLAGFPPTIGFYAKFFI 879
M M + G P T GF + +
Sbjct: 380 MFMMLASVGLPGTSGFVGEMLV 401
>gi|78066846|ref|YP_369615.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. 383]
gi|77967591|gb|ABB08971.1| NADH dehydrogenase subunit M [Burkholderia sp. 383]
Length = 509
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/401 (46%), Positives = 289/401 (72%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I I +L+GL ++V P +GF + + + W+ FN + +GIDG SLW + LT
Sbjct: 36 IALIGALVGLAAVV--PLVAGFDAHSAAMQFVESRNWLAAFNSGWRVGIDGASLWLVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TL++++ S + + ++A+Y ++FLILSGL++G F A DG+LF+IFFEATLIP++++I
Sbjct: 94 AFTTLVVVVASWESVTVRVAQYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG R YAA+KFF + GSL++L++M+YLY S+ +F++ W L + Q+ +F
Sbjct: 154 GTWGRERRVYAAVKFFFISFAGSLMLLMAMLYLYAQSH-TFDMAVWRTLQLGFAPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+LPI PDAS+
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLSDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q
Sbjct: 271 FFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
++S+ ++ AM + + L ++ K R I+ +GG+ V+P F+ F ++F++AN LPGTSGF
Sbjct: 331 LVSYGFVAGAMLLCVNVLVDRTKQREIAAYGGVAGVMPRFATFTVLFAMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+ A++FNF IG + + LI SA+Y+L + K ++F
Sbjct: 391 VGEFMVIMGAIRFNFWIGAIAALTLILSASYTLWMLKRVVF 431
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L +++++ ++I GG+ MP +++ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-NVLVDRTKQREIAAYGGVAGVMPRFATFTVLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q + +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWC 853
L +FN + + +++Y F G ++L N ++T + +I + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVNVLVDRTKQREIAAYGGVAGVMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A ++F + G P T GF +F +
Sbjct: 371 ATFTVLFAMANVGLPGTSGFVGEFMV 396
>gi|126727170|ref|ZP_01743007.1| NADH dehydrogenase subunit M [Rhodobacterales bacterium HTCC2150]
gi|126703598|gb|EBA02694.1| NADH dehydrogenase subunit M [Rhodobacterales bacterium HTCC2150]
Length = 514
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/385 (48%), Positives = 274/385 (71%), Gaps = 15/385 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
++ WI + Y LG+DG+S+ F+ LT F+ I++L ++ ++ +YM AFL+L L+
Sbjct: 67 EEATWIA--GLTYKLGVDGISILFVMLTTFLMPIVVLSCWNVDNRVKDYMIAFLVLETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G FCALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++MI +
Sbjct: 125 LGVFCALDLILFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTLLGSVLMLVAMIAM 184
Query: 341 YY---------ISNKSFNILSWHQLSITKI--EQIWLFITFFIAFAIKIPIWPMHTWLPD 389
Y + SF ++ L I I Q +++ FF +FA+K+P+WP+HTWLPD
Sbjct: 185 YVDAGTTDIPTLMTHSFGSETFSLLGIQIIGGAQTLMWLAFFASFAVKMPMWPVHTWLPD 244
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S + L++ +S I+I+Y SL+A+
Sbjct: 245 AHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLVLWMSAIAIVYTSLVAL 304
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
VQ D+KKLIAYSS+AHMGFVT+GIF + + GAI QMISH IS A+F+ +G +Y++M
Sbjct: 305 VQQDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISGALFLCVGVIYDRM 364
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I +GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++ A + N + + +
Sbjct: 365 HTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLMGAFQVNTWVAAIAT 424
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMI 594
+ +I SA Y+L L + + V+G +I
Sbjct: 425 SGVILSAGYALWLYRRV--VMGDLI 447
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ +IF +++H F
Sbjct: 291 MSAIAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 351 GALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGE 405
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ +L S ML + +Y
Sbjct: 132 DLILFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTLLGSVLMLVAMIAMYVDA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ F+++ + I + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLMTHSFGSETFSLLGIQIIGGAQ-TLMWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + PLV+ W ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLVL-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALVQQDMKKLIAYSSVAHMGFVTMGIFTFNQ--------QGLDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P AL+ M F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLM 410
Query: 882 KIFE 885
F+
Sbjct: 411 GAFQ 414
>gi|83942653|ref|ZP_00955114.1| NADH dehydrogenase subunit M [Sulfitobacter sp. EE-36]
gi|83846746|gb|EAP84622.1| NADH dehydrogenase subunit M [Sulfitobacter sp. EE-36]
Length = 518
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/418 (45%), Positives = 289/418 (69%), Gaps = 27/418 (6%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T LI L L P +GF D+ + W+ + Y LG+DG+S+ F+ LT F+ +
Sbjct: 43 TTVTFLISLFILFDFDPSNTGFQFVDEAQ-WL--MGLQYRLGVDGISILFVMLTTFMMPL 99
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
+I S +++ ++ EYM AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG+N
Sbjct: 100 VIAASWNVETRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGAN 159
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYY------------------ISNKSFNILSWHQL 356
R YA+ KFFLYT +GS+LML++M+ +Y ++ SF+I +
Sbjct: 160 RIYASFKFFLYTFLGSVLMLVAMVMMYADAGTTCIGGCEVSLLTHTFASDSFSIAG---I 216
Query: 357 SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLR 416
++ Q +F+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LR
Sbjct: 217 TVVGGLQTMMFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLR 276
Query: 417 FSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
FS+P+FP + + L++ +S I+I+Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF
Sbjct: 277 FSVPMFPVGADVMAPLVLWMSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTF 336
Query: 477 TKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSL 536
+ + GAI QMISH IS+A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++
Sbjct: 337 NQQGLDGAIFQMISHGFISAALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMFFTM 396
Query: 537 ANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
AN LPGTSGF+GEF+ ++ + N + + ++ +IFSAAY+L L + + V+G +I
Sbjct: 397 ANVGLPGTSGFVGEFLTLMGTFQVNTWVAAVATSGVIFSAAYALWLYRRV--VMGDLI 452
Score = 92.4 bits (228), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ ++L+
Sbjct: 237 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSVPMFPVGADVMAPLVLW 295
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ +IF +++H F
Sbjct: 296 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIS 355
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 356 AALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGE 410
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 134/307 (43%), Gaps = 41/307 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ L S ML + ++Y
Sbjct: 133 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVMMYADA 189
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGL------------SFKLGISPFHMWVPD 705
GT + + + +++ + ++ GL + K+ + P H W+PD
Sbjct: 190 GTTCIGGCEVSLLTHTFASDSFSIAGITVVGGLQTMMFLAFFASFAVKMPMWPVHTWLPD 249
Query: 706 VY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLI 758
+ G+ ++ +LL L V ++ + + PLV+ W + +++
Sbjct: 250 AHVQAPTAGSVVLAAILLKMGGYGFLRFSVPMFPVGADVMAPLVL-WMSAI------AIV 302
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F
Sbjct: 303 YTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQ--------QGLDGAIFQMISHGFI 354
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
F + ++ + T E+D + GL R P AL+ M F + G P T GF +F
Sbjct: 355 SAALFLCVGVIYDRM--HTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFL 412
Query: 879 IFEKIFE 885
F+
Sbjct: 413 TLMGTFQ 419
>gi|254465739|ref|ZP_05079150.1| NADH dehydrogenase i, m subunit [Rhodobacterales bacterium Y4I]
gi|206686647|gb|EDZ47129.1| NADH dehydrogenase i, m subunit [Rhodobacterales bacterium Y4I]
Length = 515
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/390 (47%), Positives = 274/390 (70%), Gaps = 22/390 (5%)
Query: 214 SGF-YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSA 272
+GF + +D + WI F + Y +G+DG+S+ F+ LT FI + IL S ++ ++ EYM A
Sbjct: 61 TGFQFVEDAE--WI--FGLKYKMGVDGISVLFVMLTTFIMPLTILASWNVTTRVKEYMVA 116
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT GS+L
Sbjct: 117 FLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFFGSVL 176
Query: 333 MLISMIYLYY--------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKI 378
ML++M+++Y S SF++L H I Q +F+ FF +FA+K+
Sbjct: 177 MLVAMVFMYVDAGTTDIETLLTHSFSAASFDVLGIH---IVGGAQTLMFLAFFASFAVKM 233
Query: 379 PIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSL 438
P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + +++++ +S
Sbjct: 234 PMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDVVLWMSA 293
Query: 439 ISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAM 498
I+++Y SL+AMVQ D+KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+A+
Sbjct: 294 IAVVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAAL 353
Query: 499 FISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAV 558
F+ +G +Y++M TR I +GG++ +P +++ F+ F++ N LPGTSGFIGEF+ ++
Sbjct: 354 FLCVGVIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMGTF 413
Query: 559 KFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + + +T +IFSA Y+L L + ++F
Sbjct: 414 QKNTWVTAVAATGVIFSAGYALWLYRRVVF 443
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDVVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 MSAIAVVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + + + VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGF 402
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 42/311 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFFGSVLMLVAMVFMYVDA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT +++++ F+V+ ++ + + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIETLLTHSFSAASFDVLGIHIVGGA-QTLMFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPL----VINWQKILLILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDVVLWMSAIAVVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T ++D + GL R P AL+ M F G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTL 409
Query: 881 EKIFETQKIWL 891
F+ + W+
Sbjct: 410 MGTFQ-KNTWV 419
>gi|107028748|ref|YP_625843.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia cenocepacia AU 1054]
gi|116690093|ref|YP_835716.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia cenocepacia HI2424]
gi|105897912|gb|ABF80870.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia AU 1054]
gi|116648182|gb|ABK08823.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia HI2424]
Length = 509
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/418 (44%), Positives = 295/418 (70%), Gaps = 21/418 (5%)
Query: 178 KHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNI 231
+H++ IR I + ++ GL ++V P +GF + +++ W+ FN
Sbjct: 28 QHSRRIRL---------IALVGAIAGLAAVV--PLIAGFDAHSAAMQFVERRDWLAAFNA 76
Query: 232 YYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGM 290
+ +GIDG SLW + LTAF TL++++ S + + ++A+Y ++FLILSGL++G F A DG+
Sbjct: 77 GWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQYYASFLILSGLMVGVFVAQDGL 136
Query: 291 LFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNI 350
LF+IFFEATLIP++++IGTWG R YAA+KFF + GSLL+L++M+YLY S+ +F++
Sbjct: 137 LFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFAGSLLLLMAMLYLYAQSH-TFDM 195
Query: 351 LSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLG 410
W L + Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG
Sbjct: 196 AVWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDGPTGAALMLA--MLKLG 253
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
YG LRF+LPI PDAS++F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG VT
Sbjct: 254 GYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVT 313
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVF 530
LG+F+ +I ++GAI+Q++S+ ++ AM + + L ++ + R I+ +GG+ V+P F+ F
Sbjct: 314 LGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDRTRQREIAAYGGVAGVMPRFATF 373
Query: 531 FIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGF+GEFM+I+ A++FNF IG + + LI SA+Y+L + K ++F
Sbjct: 374 TLLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLILSASYTLWMLKRVVF 431
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L +++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-NVLVDRTRQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q + +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWC 853
L +FN + + +++Y F G ++L N ++T + +I + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVNVLVDRTRQREIAAYGGVAGVMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A ++F + G P T GF +F +
Sbjct: 371 ATFTLLFAMANVGLPGTSGFVGEFMV 396
>gi|83953894|ref|ZP_00962615.1| NADH dehydrogenase subunit M [Sulfitobacter sp. NAS-14.1]
gi|83841839|gb|EAP81008.1| NADH dehydrogenase subunit M [Sulfitobacter sp. NAS-14.1]
Length = 518
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/418 (45%), Positives = 289/418 (69%), Gaps = 27/418 (6%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T LI L L P +GF D+ + W+ + Y LG+DG+S+ F+ LT F+ +
Sbjct: 43 TTVTFLISLFILFDFDPSNTGFQFVDEAQ-WL--MGLKYRLGVDGISILFVMLTTFMMPL 99
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
+I S +++ ++ EYM AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG+N
Sbjct: 100 VIAASWNVETRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGAN 159
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYY------------------ISNKSFNILSWHQL 356
R YA+ KFFLYT +GS+LML++M+ +Y ++ SF+I +
Sbjct: 160 RIYASFKFFLYTFLGSVLMLVAMVMMYADAGTTCIGGCEVSLLTHTFASDSFSIAG---I 216
Query: 357 SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLR 416
++ Q +F+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LR
Sbjct: 217 TVVGGLQTMMFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLR 276
Query: 417 FSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
FS+P+FP + + L++ +S I+I+Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF
Sbjct: 277 FSVPMFPVGADVMAPLVLWMSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTF 336
Query: 477 TKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSL 536
+ + GAI QMISH IS+A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++
Sbjct: 337 NQQGLDGAIFQMISHGFISAALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMFFTM 396
Query: 537 ANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
AN LPGTSGF+GEF+ ++ + N + + ++ +IFSAAY+L L + + V+G +I
Sbjct: 397 ANVGLPGTSGFVGEFLTLMGTFQVNTWVAAVATSGVIFSAAYALWLYRRV--VMGDLI 452
Score = 92.4 bits (228), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ ++L+
Sbjct: 237 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSVPMFPVGADVMAPLVLW 295
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ +IF +++H F
Sbjct: 296 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIS 355
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 356 AALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGE 410
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 134/307 (43%), Gaps = 41/307 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ L S ML + ++Y
Sbjct: 133 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVMMYADA 189
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGL------------SFKLGISPFHMWVPD 705
GT + + + +++ + ++ GL + K+ + P H W+PD
Sbjct: 190 GTTCIGGCEVSLLTHTFASDSFSIAGITVVGGLQTMMFLAFFASFAVKMPMWPVHTWLPD 249
Query: 706 VY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLI 758
+ G+ ++ +LL L V ++ + + PLV+ W + +++
Sbjct: 250 AHVQAPTAGSVVLAAILLKMGGYGFLRFSVPMFPVGADVMAPLVL-WMSAI------AIV 302
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
++ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F
Sbjct: 303 YTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQ--------QGLDGAIFQMISHGFI 354
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
F + ++ + T E+D + GL R P AL+ M F + G P T GF +F
Sbjct: 355 SAALFLCVGVIYDRM--HTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFL 412
Query: 879 IFEKIFE 885
F+
Sbjct: 413 TLMGTFQ 419
>gi|167589182|ref|ZP_02381570.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ubonensis Bu]
Length = 509
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/385 (48%), Positives = 279/385 (72%), Gaps = 10/385 (2%)
Query: 211 PFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IK 263
P +GF + + + W+ F + LGIDG SLW + LTAF TL+II+ S + +
Sbjct: 50 PLVAGFDTHSAAMQFVEHRDWLAAFGAGWRLGIDGASLWLVVLTAFTTLVIIVASWESVT 109
Query: 264 KKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFF 323
++A+Y+++FLILSGL++G F A DG+LF+IFFEATLIP++++IGTWG NR +AA+KFF
Sbjct: 110 VRVAQYLASFLILSGLMVGVFAAQDGLLFFIFFEATLIPLYLLIGTWGRENRVHAAVKFF 169
Query: 324 LYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
+ GSLL+L++M+YLY S+ +F++ W L + Q+ +F+ FF AFA+K+P+WP+
Sbjct: 170 FISFAGSLLLLMAMLYLYAKSH-TFDMSVWRTLQLGFAPQLLVFVGFFAAFAVKVPMWPV 228
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWL D + + PT +++L MLKLG YG LRF+LPI PDAS++F+ +I LSL +IIY
Sbjct: 229 HTWLRDVYSDGPTGAALMLG--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIIY 286
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
SL+A+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q++S+ ++ AM + +
Sbjct: 287 ASLLALAQTDLGKLLAYSTVAHMGLVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVS 346
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
L ++ TR I+ +GG+ N +P F+ F ++FS+AN LPGTSGF+GEFMII+ A++FNF
Sbjct: 347 VLSDRTNTRAIAEYGGVANAMPRFATFALLFSMANVGLPGTSGFVGEFMIIMGAIRFNFW 406
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
IG L + LI SA+Y+L + K ++F
Sbjct: 407 IGALAALTLILSASYTLWMLKRVVF 431
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDSM-EGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLRDVYSDGPTGAALMLG---MLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + LL + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIIYASLLALAQTDLGKLLAYSTVAHMGLVTLGLFLFNRIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L S++ + + + I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-SVLSDRTNTRAIAEYGGVANAMPRFATFALLFSMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 61/297 (20%)
Query: 604 IYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQ 663
I+ L+ L L + ++N + AA+K+F + S +L + LY + T ++
Sbjct: 140 IFFEATLIPLYLLIGTWGRENRV---HAAVKFFFISFAGSLLLLMAMLYLYAKSHTFDM- 195
Query: 664 SIFNVIKLNNINCSVLALSLLLIIVGL----SFKLGISPFHMWVPDVYQ----GASIIIT 715
S++ ++L LL+ VG + K+ + P H W+ DVY GA++++
Sbjct: 196 SVWRTLQLGFAPQ-------LLVFVGFFAAFAVKVPMWPVHTWLRDVYSDGPTGAALMLG 248
Query: 716 LL-----------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSA 764
+L L TP S F P VI L++F++I ++ A
Sbjct: 249 MLKLGGYGFLRFALPITPDASHF----------FAPAVIA-------LSLFAIIYASLLA 291
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGA 822
+ Q + +++AYS++AHMGL+ L +FN + + +++Y F + GA
Sbjct: 292 LAQTDLGKLLAYSTVAHMGLVTL----------GLFLFNRIGVEGAIVQLVSYGF-VAGA 340
Query: 823 FGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ + + ++ N T + + G+ P A ++F + G P T GF +F I
Sbjct: 341 MLLCVSVLSDRTN-TRAIAEYGGVANAMPRFATFALLFSMANVGLPGTSGFVGEFMI 396
>gi|170733427|ref|YP_001765374.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia cenocepacia MC0-3]
gi|169816669|gb|ACA91252.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia cenocepacia MC0-3]
Length = 509
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/434 (44%), Positives = 302/434 (69%), Gaps = 26/434 (5%)
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD- 220
F A+L L AGS +H+ IR I + ++ GL ++V P +GF +
Sbjct: 17 FGAVL-LRAGSD----QHSHRIRL---------IALVGAIAGLAAVV--PLIAGFDAHSA 60
Query: 221 -----KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFL 274
+++ W+ FN + +GIDG SLW + LTAF TL++++ S + + ++A+Y ++FL
Sbjct: 61 AMQFVERRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQYYASFL 120
Query: 275 ILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLML 334
ILSGL++G F A DG+LF+IFFEATLIP++++IGTWG R YAA+KFF + GSLL+L
Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFAGSLLLL 180
Query: 335 ISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
++M+YLY S+ +F++ W L + Q+ +F+ FF AFA+K+P+WP+HTWL D + +
Sbjct: 181 MAMLYLYAQSH-TFDMAVWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDG 239
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT +++LA MLKLG YG LRF+LPI PDAS++F+ +I LSL +I+Y SLIA+ Q D+
Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDL 297
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KL+AYS++AHMG VTLG+F+ +I ++GAI+Q++S+ ++ AM + + L ++ + R I
Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDRTRQREI 357
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+ +GG+ V+P F+ F ++F++AN LPGTSGF+GEFM+I+ A++FNF IG + + LI
Sbjct: 358 AAYGGVAGVMPRFATFTLLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLIL 417
Query: 575 SAAYSLCLSKNIIF 588
SA+Y+L + K ++F
Sbjct: 418 SASYTLWMLKRVVF 431
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L +++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-NVLVDRTRQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q + +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWC 853
L +FN + + +++Y F G ++L N ++T + +I + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVNVLVDRTRQREIAAYGGVAGVMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A ++F + G P T GF +F +
Sbjct: 371 ATFTLLFAMANVGLPGTSGFVGEFMV 396
>gi|406945673|gb|EKD77106.1| hypothetical protein ACD_42C00479G0004 [uncultured bacterium]
Length = 499
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/377 (51%), Positives = 268/377 (71%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI +IYY +G+DG+SL I LT F T I++L S + K+ Y++AFL++ G++IG
Sbjct: 68 WIPILHIYYDIGVDGISLPLIILTCFTTFIVVLASWTMVNHKVTHYLAAFLVMQGMVIGV 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ++D +LFY F+E LIP+++ IG WGG+NRSYAAIKFF+YT + +L+ + +
Sbjct: 128 FASIDAILFYFFWEGMLIPMYLSIGIWGGANRSYAAIKFFIYTFL-GSALLLVALLYLGL 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SFNIL+++ L ++ QIW+F F +AFAIK+P+WP HTWLPDAH EAPT GSV+LA
Sbjct: 187 HAHSFNILNFYYLKMSLPVQIWIFFGFLLAFAIKVPMWPFHTWLPDAHTEAPTGGSVVLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
A+MLKLG YG LRFSLPI P AS+ + L+I LSLI+IIYI IA+ Q D+KKLIAYSSI
Sbjct: 247 ALMLKLGAYGFLRFSLPIVPQASHTLAWLMIALSLIAIIYIGFIAIAQTDMKKLIAYSSI 306
Query: 464 AHMGFVTLGIFML------------TKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
+HMGFVTLG +M +S++GA++QMISHA + AMF++ G LY Q+ +
Sbjct: 307 SHMGFVTLGSYMSLIIIERTANLKDAYMSLEGAMVQMISHAFGAGAMFLAFGVLYEQLHS 366
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
R IS+FGGI +P FS FF++F+++N LPGTSGF+GEFMI+LS K +F + + ++
Sbjct: 367 RNISDFGGIAKTMPIFSAFFMLFAMSNVGLPGTSGFVGEFMILLSTFKSSFWVTFIAASI 426
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ AAY+L + K + F
Sbjct: 427 LVIGAAYTLWMVKRVFF 443
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 27/204 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P HTWLPD+ E PT S ++ AA M+ G + R S P+ + S+T +++
Sbjct: 220 KVPMWPFHTWLPDAHTEAPTGGSVVL-AALMLKLGAYGFLRFSLPIVPQASHTLAWLMIA 278
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS------------AYTV--- 151
+ I ++G + I Q D+K++IAYS++S +G++T+G +S AY
Sbjct: 279 LSLIAIIYIGFIAIAQTDMKKLIAYSSISHMGFVTLGSYMSLIIIERTANLKDAYMSLEG 338
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++HAF +FL+ G ++ H+++I + GG+ K MPI ++ +S VG P
Sbjct: 339 AMVQMISHAFGAGAMFLAFG-VLYEQLHSRNISDFGGIAKTMPIFSAFFMLFAMSNVGLP 397
Query: 212 FFSGFY-------SKDKKKIWIDY 228
SGF S K W+ +
Sbjct: 398 GTSGFVGEFMILLSTFKSSFWVTF 421
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 33/235 (14%)
Query: 687 IVGLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV 742
++ + K+ + PFH W+PD + G S+++ L+ KL + ++ LP+V
Sbjct: 214 LLAFAIKVPMWPFHTWLPDAHTEAPTGGSVVLAALML---KLGAYG-----FLRFSLPIV 265
Query: 743 ------INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLF----SIISI 792
+ W +++ L++ ++I AI Q + K++IAYSSI+HMG + S+I I
Sbjct: 266 PQASHTLAW--LMIALSLIAIIYIGFIAIAQTDMKKLIAYSSISHMGFVTLGSYMSLIII 323
Query: 793 KTSHNNLIIFNSCDSGLFYIITYIF---AILGAFGVIILLKNNTCNKTDELDIFIGLHQR 849
+ + N + S + + +I++ F A+ AFGV + + ++ N +D F G+ +
Sbjct: 324 ERTANLKDAYMSLEGAMVQMISHAFGAGAMFLAFGV-LYEQLHSRNISD----FGGIAKT 378
Query: 850 NPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
P + M+F S G P T GF +F I F++ W+ + +IGA
Sbjct: 379 MPIFSAFFMLFAMSNVGLPGTSGFVGEFMILLSTFKS-SFWVTFIAASILVIGAA 432
>gi|85717017|ref|ZP_01047979.1| NADH dehydrogenase subunit M [Nitrobacter sp. Nb-311A]
gi|85696141|gb|EAQ34037.1| NADH dehydrogenase subunit M [Nitrobacter sp. Nb-311A]
Length = 502
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 268/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
++ W+ I Y +G+DG+SL F+ LT A + L I+ I +++ YM AFLIL L
Sbjct: 69 EQATWLAT-GIRYHMGVDGISLPFVILTTALMPLCIVASWKSIARRVPAYMMAFLILETL 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA KFFLYTL+GS+LML++++
Sbjct: 128 MIGTFSALDLLLFYVFFEGGLIPMFLIIGIWGGPRRVYATFKFFLYTLLGSVLMLLAIMA 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + Q ++ Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 LYWNAGTT-DIPTLMQTAVPYNLQKWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 246
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ L+ LS ++I+Y SL+A++Q D+KKLIA
Sbjct: 247 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFVLSAVAIVYTSLVALMQEDMKKLIA 306
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T I G + QM+SH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 307 YSSVAHMGFVTMGIFAGTMQGIHGGVFQMVSHGIVSGALFLCVGVVYDRMHTREIAAYGG 366
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEF+ ++ K + V + +I SAAY+
Sbjct: 367 LVNRMPLYALVFLVFTMANVGLPGTSGFVGEFLSLIGTFKVSIPTAVAATLGVILSAAYA 426
Query: 580 LCLSKNIIF 588
L L + I+F
Sbjct: 427 LWLYRKIVF 435
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + ++F+
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFV 282
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
A+ + L+ ++Q D+K++IAYS+++ +G++T+G+ + +F +++H
Sbjct: 283 LSAVAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGIHGGVFQMVSHGIVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ + L+ ++ VG P SGF +
Sbjct: 343 GALFLCVG-VVYDRMHTREIAAYGGLVNRMPLYALVFLVFTMANVGLPGTSGFVGE 397
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 116/255 (45%), Gaps = 30/255 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A K+F+ +L S ML I LY GT ++ ++ N+ + L
Sbjct: 166 ATFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMQTAVPYNLQ----KWAWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVILAA--------ILLKMGGYGFLRFSLPMFPLAS 273
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ +L+ +++ ++ A+ Q + K++IAYSS+AHMG + I + + +F
Sbjct: 274 HDFAPLVFVLSAVAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGIHGGVF 333
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P AL+ ++F
Sbjct: 334 QMVSHGI---------VSGALFLCVGVVYDRMH-TREIAAYGGLVNRMPLYALVFLVFTM 383
Query: 863 SLAGFPPTIGFYAKF 877
+ G P T GF +F
Sbjct: 384 ANVGLPGTSGFVGEF 398
>gi|315499802|ref|YP_004088605.1| proton-translocating NADH-quinone oxidoreductase, chain m
[Asticcacaulis excentricus CB 48]
gi|315417814|gb|ADU14454.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Asticcacaulis excentricus CB 48]
Length = 500
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/373 (49%), Positives = 267/373 (71%), Gaps = 4/373 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y +K W + + Y +G+DG+S+ F+ LTA + + IL S D +K +L EYM AFL+
Sbjct: 71 YQFVEKVQWFSFLS--YHMGVDGISVLFVALTALLMPLCILASWDSVKTRLVEYMIAFLV 128
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L L+IG F ALD LFY+FFE L+P+F+IIG WGG +R YAA KFFLYTL+GS+LML
Sbjct: 129 LETLVIGVFTALDLFLFYVFFEGGLVPMFLIIGIWGGKDRIYAAYKFFLYTLLGSVLMLA 188
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+M+Y+ ++ S +I + + ++ Q WL+ FF +FA+K+P+WP+HTWLPDAHV+AP
Sbjct: 189 AMLYMVGVAGTS-DIPTLSTYAFSQAAQPWLWFAFFASFAVKMPMWPVHTWLPDAHVQAP 247
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSV+LA I+LKLG YG +RF+LP+FP AS F+ ++TLS+I+I+ SLIA Q DIK
Sbjct: 248 TAGSVLLAGILLKLGGYGFIRFNLPMFPYASELFTPFVLTLSVIAIVVTSLIAFRQTDIK 307
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMGFVT+GIF + +QGA+ QMISH IS A+F+ +G +Y++ TR I+
Sbjct: 308 KLIAYSSVAHMGFVTMGIFAGNQAGVQGAVYQMISHGFISGALFLCVGVVYDRWHTREIA 367
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG+ ++PHF+ F++F++AN LPGTSGF+GE + + + + ++ +T +I S
Sbjct: 368 FYGGLTKLMPHFAFVFLLFTMANVGLPGTSGFVGEILTMTGLYQASTWAALVAATGVILS 427
Query: 576 AAYSLCLSKNIIF 588
A Y+L L K +++
Sbjct: 428 AMYALTLFKRVMY 440
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K +P+HTWLPD+ ++ PT S L+ + G I P+F ++ + +L +
Sbjct: 229 KMPMWPVHTWLPDAHVQAPTAGSVLLAGILLKLGGYGFIRFNLPMFPYASELFTPFVLTL 288
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I L+ Q DIK++IAYS+++ +G++T+G+ GV +++ +++H F
Sbjct: 289 SVIAIVVTSLIAFRQTDIKKLIAYSSVAHMGFVTMGIFAGNQAGVQG---AVYQMISHGF 345
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL K MP L+ ++ VG P SGF +
Sbjct: 346 ISGALFLCVG-VVYDRWHTREIAFYGGLTKLMPHFAFVFLLFTMANVGLPGTSGFVGE 402
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 129/288 (44%), Gaps = 37/288 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I K+ I+ AA K+F+ +L S ML + + G+ GT ++ +
Sbjct: 153 LVPMFLIIGIWGGKDRIY---AAYKFFLYTLLGSVLMLAAMLYMVGVAGTSDIPT----- 204
Query: 670 KLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLF 727
L+ S A L SF K+ + P H W+PD + A ++LL+
Sbjct: 205 -LSTYAFSQAAQPWLWFAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVLLAG------- 256
Query: 728 VIIYRL----LIKCLLPLVINWQKI----LLILAIFSLIIGNVSAITQYNFKRMIAYSSI 779
I+ +L I+ LP+ ++ +L L++ ++++ ++ A Q + K++IAYSS+
Sbjct: 257 -ILLKLGGYGFIRFNLPMFPYASELFTPFVLTLSVIAIVVTSLIAFRQTDIKKLIAYSSV 315
Query: 780 AHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE 839
AHMG + I + + ++ G I GA + + + + + T E
Sbjct: 316 AHMGFVTMGIFAGNQAGVQGAVYQMISHGF---------ISGALFLCVGVVYDRWH-TRE 365
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ + GL + P A + ++F + G P T GF + +++
Sbjct: 366 IAFYGGLTKLMPHFAFVFLLFTMANVGLPGTSGFVGEILTMTGLYQAS 413
>gi|84686451|ref|ZP_01014345.1| NADH dehydrogenase subunit M [Maritimibacter alkaliphilus HTCC2654]
gi|84665634|gb|EAQ12110.1| NADH dehydrogenase subunit M [Rhodobacterales bacterium HTCC2654]
Length = 517
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/411 (47%), Positives = 281/411 (68%), Gaps = 17/411 (4%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T T LI L L G P +GF ++ W+ + Y +G+DG+S+ F+ LT F+ I
Sbjct: 42 TTATFLISLGVLFGFDPSDTGFQFVEEAD-WL--MGLQYKMGVDGISVLFVMLTTFLMPI 98
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
I ++ ++ EYM AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG N
Sbjct: 99 TIAACWNVTTRVKEYMIAFLVLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKN 158
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYYIS---------NKSFNILSWHQLSITKI--EQ 363
R YAA KFFLYT +GS+LML++M+Y++ + N +F+ + L IT Q
Sbjct: 159 RIYAAFKFFLYTFLGSVLMLVAMVYMFMEAGTTDIPTLLNHAFDSTTMRVLGITVTGGAQ 218
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
LF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP
Sbjct: 219 TLLFVAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFP 278
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQG 483
S + ++ LS I+I+Y SL+A+VQ D+KKLIAYSS+AHMG+VT GIF + I G
Sbjct: 279 VGSDVMATFVLWLSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTAGIFAANQQGIDG 338
Query: 484 AIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
AI QMISH IS A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPG
Sbjct: 339 AIFQMISHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPG 398
Query: 544 TSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
TSGF+GEF+ ++ + N + + ++ +I SAAY+L L + + V+G +I
Sbjct: 399 TSGFVGEFLTLVGMFQANTWVAAVATSGVILSAAYALWLYRRV--VMGDLI 447
Score = 93.6 bits (231), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + S+ + +L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMATFVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +GY+T G+ G+ +IF +++H
Sbjct: 291 LSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTAGIFAANQQGIDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGE 405
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 39/306 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I KN I+ AA K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKNRIY---AAFKFFLYTFLGSVLMLVAMVYMFMEA 188
Query: 658 GTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQG 709
GT ++ ++ N +++ I + A +LL + SF K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLNHAFDSTTMRVLGITVTGGAQTLLFVAFFASFAVKMPMWPVHTWLPDAHVQ 248
Query: 710 ASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGN 761
A T + L I+ ++ ++ LP+ ++ L L+ +++ +
Sbjct: 249 AP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMATFVLWLSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALVQEDMKKLIAYSSVAHMGYVTAGIFAANQ--------QGIDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P AL+ M F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLV 410
Query: 882 KIFETQ 887
+F+
Sbjct: 411 GMFQAN 416
>gi|206560509|ref|YP_002231273.1| NADH-ubiquinone oxidoreductase subunit [Burkholderia cenocepacia
J2315]
gi|421870253|ref|ZP_16301888.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia cenocepacia
H111]
gi|444358616|ref|ZP_21160006.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia BC7]
gi|444366628|ref|ZP_21166650.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia
K56-2Valvano]
gi|198036550|emb|CAR52447.1| NADH-ubiquinone oxidoreductase subunit [Burkholderia cenocepacia
J2315]
gi|358069779|emb|CCE52766.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia cenocepacia
H111]
gi|443603660|gb|ELT71651.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia BC7]
gi|443604242|gb|ELT72195.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia
K56-2Valvano]
Length = 509
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/401 (45%), Positives = 289/401 (72%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I + ++ GL ++V P +GF + +++ W+ FN + +GIDG SLW + LT
Sbjct: 36 IALVGAIAGLAAVV--PLVAGFDAHSAAMQFVERRDWLAAFNSGWRVGIDGASLWLVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TL++++ S + + ++A+Y ++FLILSGL++G F A DG+LF+IFFEATLIP++++I
Sbjct: 94 AFTTLVVVVASWESVTVRVAQYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG R YAA+KFF + GSLL+L++M+YLY S+ +F++ W L + Q+ +F
Sbjct: 154 GTWGRERRVYAAVKFFFISFAGSLLLLMAMLYLYAQSH-TFDMAVWRTLQLGFAPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+LPI PDAS+
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLSDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ +I LSL +I+Y SL+A+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q
Sbjct: 271 FFAPAVIALSLFAIVYASLVALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
++S+ ++ AM + + L ++ K R I+ +GG+ V+P F+ F ++F++AN LPGTSGF
Sbjct: 331 LVSYGFVAGAMLLCVNVLVDRTKQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+ A++FNF IG + + LI SA+Y+L + K ++F
Sbjct: 391 VGEFMVIMGAIRFNFWIGAIAALTLILSASYTLWMLKRVVF 431
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLVALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L +++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-NVLVDRTKQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLSDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q + +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLVALAQTDLGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWC 853
L +FN + + +++Y F G ++L N ++T + +I + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVNVLVDRTKQREIAAYGGVAGVMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A ++F + G P T GF +F +
Sbjct: 371 ATFTLLFAMANVGLPGTSGFVGEFMV 396
>gi|209885064|ref|YP_002288921.1| NADH dehydrogenase subunit M [Oligotropha carboxidovorans OM5]
gi|337741306|ref|YP_004633034.1| NADH-quinone oxidoreductase subunit M [Oligotropha carboxidovorans
OM5]
gi|386030322|ref|YP_005951097.1| NADH-quinone oxidoreductase subunit M [Oligotropha carboxidovorans
OM4]
gi|209873260|gb|ACI93056.1| NADH-quinone oxidoreductase subunit m [Oligotropha carboxidovorans
OM5]
gi|336095390|gb|AEI03216.1| NADH-quinone oxidoreductase subunit M [Oligotropha carboxidovorans
OM4]
gi|336098970|gb|AEI06793.1| NADH-quinone oxidoreductase subunit M [Oligotropha carboxidovorans
OM5]
Length = 501
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/357 (51%), Positives = 262/357 (73%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +G+DG+SL F+ LT + IL S I+ ++ EYM AFL+L L++G F ALD +L
Sbjct: 79 YHMGVDGISLPFVILTTALMPFAILASWKSIQVRVREYMMAFLVLETLMVGTFSALDLVL 138
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ LY + + +I
Sbjct: 139 FYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMALYAQAGTT-DIP 197
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + QIW ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILAAI+LK+G
Sbjct: 198 TLMTTKLPHNLQIWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGG 257
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FP AS+ F+ L+ TLS+I+IIY SL+A++Q D+KKLIAYSS+AHMGFVT+
Sbjct: 258 YGFLRFSLPMFPLASHDFAPLVWTLSVIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTM 317
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG++N +P ++ F
Sbjct: 318 GIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVIYDRMHTREIAAYGGLVNRMPLYAFTF 377
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGF+GEFM +L K + L + +I SA Y+L L + I+F
Sbjct: 378 LLFTMANVGLPGTSGFVGEFMTLLGTFKVSVATAFLATIGVILSAGYALWLYRKIVF 434
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSVIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP+ T L+ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREIAAYGGLVNRMPLYAFTFLLFTMANVGLPGTSGFVGE 396
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 114/262 (43%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ +N+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYAQAGTTDIPTLMTTKLPHNLQI----WAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ I+ +LL L + ++ L PLV
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L++ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 280 -WT-----LSVIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------MQ 325
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+F +I++ F + ++ + T E+ + GL R P A ++F +
Sbjct: 326 GVAGGVFQMISHGIVSGALFLCVGVIYDRM--HTREIAAYGGLVNRMPLYAFTFLLFTMA 383
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F F+
Sbjct: 384 NVGLPGTSGFVGEFMTLLGTFK 405
>gi|452750676|ref|ZP_21950423.1| NADH-ubiquinone oxidoreductase chain M [alpha proteobacterium
JLT2015]
gi|451961870|gb|EMD84279.1| NADH-ubiquinone oxidoreductase chain M [alpha proteobacterium
JLT2015]
Length = 527
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 311/467 (66%), Gaps = 9/467 (1%)
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSG---FYSKDK 221
LL L +G+ ++ ++D R + + T I ++G+ +G F +G F ++
Sbjct: 11 LLPLISGAALLLWPGDEDGRANSARWLALGTTLIELVLGIALWLG--FDTGTSAFQYRET 68
Query: 222 KKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLI 280
++ YF+ + LGIDG+SL I L+ F+ I IL S +K ++ EYM+AF+++ L+
Sbjct: 69 VPLFEPYFS--WALGIDGISLVLIALSVFLMPICILASWQSVKTRVPEYMAAFMLMEALM 126
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F A D LFY+ FE LIP+++IIG WGG+NR YA+ KFFLYTL+GS+LML++M+Y+
Sbjct: 127 IGVFAATDLFLFYVMFEGGLIPMYLIIGIWGGTNRIYASYKFFLYTLLGSVLMLLAMMYM 186
Query: 341 YYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSV 400
+ + +I + Q+WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSV
Sbjct: 187 VSAAETT-DIPTLMAYDFDPQVQVWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSV 245
Query: 401 ILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAY 460
ILA ++LK+G YG +RFSLP+FPDAS L+ LS+++++Y SL+A+ Q D+KKLIAY
Sbjct: 246 ILAGVLLKMGGYGFIRFSLPMFPDASVELMWLVFGLSMVAVVYTSLVALAQNDMKKLIAY 305
Query: 461 SSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGI 520
SS+AHM FVT+G+F + +++G+I+ M+SH L+S A+F+ +G +Y+++ TR IS +GG+
Sbjct: 306 SSVAHMAFVTVGLFGFNQQALEGSIVVMLSHGLVSGALFLCVGVVYDRLHTREISAYGGV 365
Query: 521 INVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSL 580
N++P +++FF++F++A+ LPGTSGF+GEF+++L A K + + T +I AAY L
Sbjct: 366 ANIMPRYAIFFMLFTMASVGLPGTSGFVGEFLVMLGAFKTSTWAVFVVCTGIILGAAYML 425
Query: 581 CLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIF 627
L + ++F ++G LS+ + L+ + + L N+F
Sbjct: 426 FLYRRVVFGTVTSEAVAGMRDLSVREYICLVPIAVATLWMGIAPNVF 472
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L ++F
Sbjct: 222 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPDASVELMWLVFG 280
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ + QND+K++IAYS+++ + ++TVGL A SI +++H
Sbjct: 281 LSMVAVVYTSLVALAQNDMKKLIAYSSVAHMAFVTVGLFGFNQQALEGSIVVMLSHGLVS 340
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GG+ MP I ++ ++ VG P SGF +
Sbjct: 341 GALFLCVG-VVYDRLHTREISAYGGVANIMPRYAIFFMLFTMASVGLPGTSGFVGE 395
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 140/328 (42%), Gaps = 35/328 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L + +MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 119 FMLMEALMIGVFAATDLFLFYVMFEGGLIPMYLIIGIWGGTNRIYAS---YKFFLYTLLG 175
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + T ++ ++ + + V L + K+ + P H W
Sbjct: 176 SVLMLLAMMYMVSAAETTDIPTLMA----YDFDPQVQVWLWLAFFASFAVKMPMWPVHTW 231
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+PD + Q + +L K+ + I R + + ++ L++ +++ +
Sbjct: 232 LPDAHVQAPTAGSVILAGVLLKMGGYGFI-RFSLPMFPDASVELMWLVFGLSMVAVVYTS 290
Query: 762 VSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q + K++IAYSS+AHM GL F+ +++ S ++ LF + +
Sbjct: 291 LVALAQNDMKKLIAYSSVAHMAFVTVGLFGFNQQALEGSIVVMLSHGLVSGALFLCVGVV 350
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+ + G+ P A+ M+F + G P T GF +
Sbjct: 351 YDRL---------------HTREISAYGGVANIMPRYAIFFMLFTMASVGLPGTSGFVGE 395
Query: 877 FFIFEKIFETQKIWLLLLIIMCSLIGAK 904
F + F+T W + ++ ++GA
Sbjct: 396 FLVMLGAFKTST-WAVFVVCTGIILGAA 422
>gi|83592902|ref|YP_426654.1| NADH dehydrogenase subunit M [Rhodospirillum rubrum ATCC 11170]
gi|386349633|ref|YP_006047881.1| NADH:ubiquinone oxidoreductase subunit M [Rhodospirillum rubrum
F11]
gi|83575816|gb|ABC22367.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodospirillum rubrum ATCC 11170]
gi|346718069|gb|AEO48084.1| NADH:ubiquinone oxidoreductase subunit M [Rhodospirillum rubrum
F11]
Length = 510
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/379 (48%), Positives = 269/379 (70%), Gaps = 3/379 (0%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEY 269
P SGF +K W+ + I Y +G+DG+S+ F+ L+ F+T + IL S I K++ EY
Sbjct: 59 PAQSGFQFVEKVS-WLPDYGINYQMGVDGISVLFVLLSTFLTPLCILASWTSITKRVKEY 117
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFL+L +++G FCALD ++FY+FFE LIP+F+IIG WGG R YA+ KFFLYTL G
Sbjct: 118 MVAFLVLETMMVGMFCALDFVVFYVFFEGVLIPMFLIIGIWGGGRRVYASFKFFLYTLAG 177
Query: 330 SLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPD 389
S+LM+++M+ +Y I + +I + Q WL++ F +FA+K+P+WP+HTWLPD
Sbjct: 178 SVLMMVAMLAMY-IEAGTTDIPTLMSHGFPAAMQTWLWLAMFASFAVKVPMWPVHTWLPD 236
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHVEAPT GSVILA ++LK+G YG LRFS+P+ P AS F+ I LS+I +IY SL+A+
Sbjct: 237 AHVEAPTAGSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFALSVIGVIYTSLVAL 296
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
VQ D+KKLIAYSSIAHM FVT GIF + ++S++GA+ QM+SH ++S A+F+ +G +Y+++
Sbjct: 297 VQEDMKKLIAYSSIAHMAFVTAGIFAVNQMSVEGALYQMLSHGVVSGALFLCVGVVYDRL 356
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR IS +GG+ +P +++ F++F +A+ LPGT GFIGEF+I++ + + + + +
Sbjct: 357 HTREISRYGGLAKNMPRYALVFMVFMMASIGLPGTGGFIGEFLIMMGVFQISTWVALFIA 416
Query: 570 TALIFSAAYSLCLSKNIIF 588
T +I AAY L L + +IF
Sbjct: 417 TGVILGAAYMLYLYRRVIF 435
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ L++ + +F
Sbjct: 224 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFA 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-GVSAYTV--SIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ + ++T G+ V+ +V +++ +++H
Sbjct: 283 LSVIGVIYTSLVALVQEDMKKLIAYSSIAHMAFVTAGIFAVNQMSVEGALYQMLSHGVVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL K MP + ++ +++ +G P GF
Sbjct: 343 GALFLCVG-VVYDRLHTREISRYGGLAKNMPRYALVFMVFMMASIGLPGTGGF 394
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ + S M+ + +Y GT ++ ++ + + ++ L +
Sbjct: 166 ASFKFFLYTLAGSVLMMVAMLAMYIEAGTTDIPTLMS----HGFPAAMQTWLWLAMFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLV-INWQKI 748
+ K+ + P H W+PD + A +++L+ K+ + + R I +LPL ++
Sbjct: 222 AVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFL-RFSIP-MLPLASADFAPF 279
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ L++ +I ++ A+ Q + K++IAYSSIAHM + I ++ N + S +
Sbjct: 280 IFALSVIGVIYTSLVALVQEDMKKLIAYSSIAHMAFVTAGIFAV----NQM----SVEGA 331
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
L+ ++++ + GA + + + + + T E+ + GL + P AL+ M+FM + G P
Sbjct: 332 LYQMLSH-GVVSGALFLCVGVVYDRLH-TREISRYGGLAKNMPRYALVFMVFMMASIGLP 389
Query: 869 PTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
T GF +F I +F+ W+ L I ++GA
Sbjct: 390 GTGGFIGEFLIMMGVFQIST-WVALFIATGVILGAA 424
>gi|365895262|ref|ZP_09433383.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. STM 3843]
gi|365423981|emb|CCE05925.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Bradyrhizobium sp. STM 3843]
Length = 502
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 267/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + II + ++ EYM AFLIL L
Sbjct: 68 EKASWLAS-GITYHMGVDGISLPFVILTTALLPFCIIASWKSVTVRVREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYW-NGGTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI+LK+G YG LRFSLP+FP AS+ F+ LI TLS I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VILAAILLKMGGYGFLRFSLPMFPLASHDFAPLIWTLSAIAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGIVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGFIGEFM +L K + + +IFSA Y+
Sbjct: 366 LVNRMPLYAFVFMVFTMANVGLPGTSGFIGEFMTLLGTFKVSTPTTFFATFGVIFSACYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + +++
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLIWT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G I+ + H ++I GGL MP+ ++ ++ VG P SGF
Sbjct: 339 IVSGALFLCVG-IVYDRMHTREIAAYGGLVNRMPLYAFVFMVFTMANVGLPGTSGF 393
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 121/263 (46%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNGGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAA--------ILLKMGGYGFLRFSLPMFPLAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 HDFAPLIWTLSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------M 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+F +I++ + GA + + + + + T E+ + GL R P A + M+F
Sbjct: 325 QGVAGGVFQMISHGI-VSGALFLCVGIVYDRMH-TREIAAYGGLVNRMPLYAFVFMVFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 383 ANVGLPGTSGFIGEFMTLLGTFK 405
>gi|220924017|ref|YP_002499319.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium nodulans ORS 2060]
gi|219948624|gb|ACL59016.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium nodulans ORS 2060]
Length = 506
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 265/360 (73%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALD 288
+I + LG+DG ++ + LT F+ I S I ++ EY AFL+L +IG FCALD
Sbjct: 76 SIRFKLGVDGFAMPLLLLTTFLMPFCIAASWHSIGVRVKEYFVAFLVLETTMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ +Y+ + +
Sbjct: 136 LVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAILAMYWQAGTT- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + Q Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILAAI+LK
Sbjct: 195 DIPTLLQHRFPANLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG +RFSLP+FPDAS+ F+ LI LS+++IIY SL+A+ Q DIKKLIAYSS+AHMGF
Sbjct: 255 MGGYGFIRFSLPMFPDASHLFAPLIFALSIVAIIYTSLVALAQTDIKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VTLG+F +T+ IQGA+ MISH ++S A+F+ +G +Y++M TR I+ +GG++N +P ++
Sbjct: 315 VTLGLFTMTEQGIQGALFLMISHGIVSGALFLCVGVIYDRMHTREIAAYGGLVNRMPLYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
V ++F++AN LPGTSGF+GEF+ ++ A + N + + +I SAAY+L L +I+
Sbjct: 375 VALMVFTMANVGLPGTSGFVGEFLSMVGAFRTNPMVSFFSVFGIILSAAYALWLYARVIY 434
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFIRFSLPMFPDASHLFAPLIFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ + Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSIVAIIYTSLVALAQTDIKKLIAYSSVAHMGFVTLGLFTMTEQGIQG---ALFLMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREIAAYGGLVNRMPLYAVALMVFTMANVGLPGTSGFVGE 396
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 134/300 (44%), Gaps = 35/300 (11%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ +L S ML I +Y
Sbjct: 135 DLVLFYLFFEAGLIPMFLIIGIWGGKRRIYAS---FKFFLYTLLGSVLMLLAILAMYWQA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT ++ ++ + ++ L + K+ + P H W+PD + A +++
Sbjct: 192 GTTDIPTLLQ----HRFPANLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ ++ I+ LP+ + + ++ L+I ++I ++ A+ Q +
Sbjct: 248 LAA--------ILLKMGGYGFIRFSLPMFPDASHLFAPLIFALSIVAIIYTSLVALAQTD 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSS+AHMG + + ++ LF +I++ F + ++
Sbjct: 300 IKKLIAYSSVAHMGFVTLGLFTMTE--------QGIQGALFLMISHGIVSGALFLCVGVI 351
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ T E+ + GL R P A+ +M+F + G P T GF +F F T +
Sbjct: 352 YDRM--HTREIAAYGGLVNRMPLYAVALMVFTMANVGLPGTSGFVGEFLSMVGAFRTNPM 409
>gi|170742523|ref|YP_001771178.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium sp. 4-46]
gi|168196797|gb|ACA18744.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium sp. 4-46]
Length = 506
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/422 (45%), Positives = 287/422 (68%), Gaps = 3/422 (0%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
L + I+ ++ +++ + + T T L+ L++ + + + W+
Sbjct: 15 LVGAAFILTLQGDEEGVQRNARWAALAATVATFLLSLVAWGRYDSSTAAFQLVESHAWLT 74
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCA 286
+I + LG+DG S+ + LT F+ I S I ++ EY AFL+L +IG FCA
Sbjct: 75 E-SIRFKLGVDGFSMPLLLLTTFLMPFCIAASWHAIGHRVKEYFVAFLVLETTMIGVFCA 133
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 134 LDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAILAMYWQAGT 193
Query: 347 SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
+ +I + Q Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+
Sbjct: 194 T-DIPTLLQHRFPTGLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGIL 252
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LK+G YG +R SLP+FPDAS+ F+ L+ LS+++IIY SL+A+VQ DIKKLIAYSS+AHM
Sbjct: 253 LKMGGYGFIRVSLPMFPDASHLFAPLVFALSIVAIIYTSLVALVQTDIKKLIAYSSVAHM 312
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
GFVTLG+F +T+ IQGA+ MISH ++S A+F+ +G +Y++M TR I+ +GG++N +P
Sbjct: 313 GFVTLGLFTMTEQGIQGALFLMISHGIVSGALFLCVGVIYDRMHTREIAAYGGLVNRMPL 372
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
++V ++F++AN LPGTSGF+GEF+ +L A + N + + +I SAAY+L L +
Sbjct: 373 YAVAMMVFTMANVGLPGTSGFVGEFLSMLGAFRANPMVSFFSVFGIILSAAYALWLFARV 432
Query: 587 IF 588
I+
Sbjct: 433 IY 434
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R+S P+F ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRVSLPMFPDASHLFAPLVFA 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSIVAIIYTSLVALVQTDIKKLIAYSSVAHMGFVTLGLFTMTEQGIQG---ALFLMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREIAAYGGLVNRMPLYAVAMMVFTMANVGLPGTSGFVGE 396
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 130/288 (45%), Gaps = 35/288 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ +L S ML I +Y
Sbjct: 135 DLVLFYLFFEAGLIPMFLIIGIWGGKRRIYAS---FKFFLYTLLGSVLMLLAILAMYWQA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT ++ ++ + + L + K+ + P H W+PD + A +++
Sbjct: 192 GTTDIPTLLQ----HRFPTGLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ ++ I+ LP+ + + ++ L+I ++I ++ A+ Q +
Sbjct: 248 LAG--------ILLKMGGYGFIRVSLPMFPDASHLFAPLVFALSIVAIIYTSLVALVQTD 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSS+AHMG + + ++ LF +I++ F + ++
Sbjct: 300 IKKLIAYSSVAHMGFVTLGLFTMTE--------QGIQGALFLMISHGIVSGALFLCVGVI 351
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
+ T E+ + GL R P A+ MM+F + G P T GF +F
Sbjct: 352 YDRM--HTREIAAYGGLVNRMPLYAVAMMVFTMANVGLPGTSGFVGEF 397
>gi|115352159|ref|YP_773998.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia ambifaria AMMD]
gi|115282147|gb|ABI87664.1| NADH dehydrogenase subunit M [Burkholderia ambifaria AMMD]
Length = 509
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/401 (46%), Positives = 288/401 (71%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I + +L GL ++V P +GF S + + W+ FN + +GIDG SLW + LT
Sbjct: 36 IALVGALAGLAAVV--PLVTGFDSHSAAMQFTETRDWLAAFNAGWRVGIDGASLWLVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TL++++ S + + ++A+Y ++FLILSGL++G F A DG+LF+IFFEATLIP++++I
Sbjct: 94 AFTTLVVVIASWESVTMRVAQYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG +R YAA+KFF + GSLL+L++M+YL+ S+ +F++ +W L + Q+ +F
Sbjct: 154 GTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLFAKSH-TFDMNAWRTLQLGFAPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+LPI PDAS+
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q
Sbjct: 271 FFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
++S+ ++ AM + + L ++ K R I +GG+ V+P F+ F ++F++AN LPGTSGF
Sbjct: 331 LVSYGFVAGAMLLCVSVLVDRTKQREIGAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+ A++ NF IG + + LI SA+Y+L + K ++F
Sbjct: 391 VGEFMVIMGAIRVNFWIGAIAALTLILSASYTLWMVKRVVF 431
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L S++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-SVLVDRTKQREIGAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 128/295 (43%), Gaps = 57/295 (19%)
Query: 604 IYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQ 663
I+ L+ L L + +++ ++ AA+K+F + S +L + L+ + T ++
Sbjct: 140 IFFEATLIPLYLLIGTWGREHRVY---AAVKFFFISFAGSLLLLMAMLYLFAKSHTFDM- 195
Query: 664 SIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLL-- 717
N + + + L L + K+ + P H W+ DVY GA++++ +L
Sbjct: 196 ---NAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLAMLKL 252
Query: 718 ---------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
L TP S F P VI L++F+++ ++ A+ Q
Sbjct: 253 GGYGFLRFALPITPDASHF----------FAPAVIA-------LSLFAIVYASLIALAQT 295
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVI 826
+ +++AYS++AHMG++ L +FN + + +++Y F G +
Sbjct: 296 DLGKLLAYSTVAHMGIVTL----------GLFLFNQIGVEGAIVQLVSYGFVA----GAM 341
Query: 827 ILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+L + ++T + +I + G+ P A ++F + G P T GF +F +
Sbjct: 342 LLCVSVLVDRTKQREIGAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMV 396
>gi|409436911|ref|ZP_11264070.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Rhizobium
mesoamericanum STM3625]
gi|408751385|emb|CCM75224.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Rhizobium
mesoamericanum STM3625]
Length = 503
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/369 (49%), Positives = 273/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ LT F+ +L S L I+K+L +YM AFLIL +
Sbjct: 68 EKHNWLGT-GISYHLGVDGISMLFVILTTFLMPFCVLASWLSIEKRLKDYMIAFLILEVM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DIPALLAYKFPPQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA ++LKLG YGL+RFSL +FP AS +F+ L+ LS+I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VILAGVLLKLGGYGLIRFSLGMFPIASEFFAPLVFALSVIAIIYTSLVALMQDDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMG+VT+GIF +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG
Sbjct: 306 YSSVAHMGYVTMGIFAANVQGLQGSIFQMLSHGIVSGALFLCVGVIYDRTHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V ++F++AN LPGTSGFIGEF+ ++ + N + + +T +I SAAY+
Sbjct: 366 LVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYA 425
Query: 580 LCLSKNIIF 588
L L + +IF
Sbjct: 426 LWLYRRVIF 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPIASEFFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+D+K++IAYS+++ +GY+T+G+ V SIF +++H
Sbjct: 282 LSVIAIIYTSLVALMQDDMKKLIAYSSVAHMGYVTMGIFAANVQGLQGSIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGF 393
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 132/296 (44%), Gaps = 24/296 (8%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + + K+ +++S K+F+ +L S ML I +Y GT
Sbjct: 138 LFYVFFEAGLIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLS 719
++ ++ K + L L+ + K+ + P H W+PD + Q + +L
Sbjct: 195 DIPALL-AYKFPPQMQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + +I L + P+ + ++ L++ ++I ++ A+ Q + K++IAYSS
Sbjct: 251 VLLKLGGYGLIRFSL--GMFPIASEFFAPLVFALSVIAIIYTSLVALMQDDMKKLIAYSS 308
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKT 837
+AHMG + I + IF G+ + GA F + ++ + T T
Sbjct: 309 VAHMGYVTMGIFAANVQGLQGSIFQMLSHGI---------VSGALFLCVGVIYDRT--HT 357
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
E+ + GL P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 358 REIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNT-WVAL 412
>gi|294677073|ref|YP_003577688.1| NADH-quinone oxidoreductase subunit M [Rhodobacter capsulatus SB
1003]
gi|1709413|sp|P50974.1|NUOM_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit M; AltName:
Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1
subunit M
gi|3282578|gb|AAC25004.1| NUOM [Rhodobacter capsulatus]
gi|294475893|gb|ADE85281.1| NADH-quinone oxidoreductase, M subunit [Rhodobacter capsulatus SB
1003]
gi|1586527|prf||2204231H NADH ubiquinone oxidoreductase
Length = 512
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/409 (46%), Positives = 280/409 (68%), Gaps = 22/409 (5%)
Query: 196 TCITSLIGLLSLVG-APFFSGF-YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITL 253
T +T L+ LL L G P G + +D+ WI ++Y LG+DG+S+ F+ LT F+
Sbjct: 42 TVVTFLVSLLLLAGFDPANPGMQFVEDRA--WI--MGLHYKLGVDGISILFVMLTTFLMP 97
Query: 254 IIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
+ I + ++ ++ EYM AFL+L L+IG F ALD +LFY+FFEA LIP+F+IIG WGG
Sbjct: 98 LTIASAWHVETRVKEYMIAFLVLEALMIGVFVALDLVLFYLFFEAGLIPMFLIIGIWGGK 157
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK-------SFNI-------LSWHQLSIT 359
R YAA KFFLYT +GS+LML++M+ +Y ++ SF+ L W L T
Sbjct: 158 ERIYAAFKFFLYTFLGSVLMLVAMVAMYMMAGTTDIVTLMSFDFPHADLPFLGWWTL--T 215
Query: 360 KIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSL 419
Q LF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAA++LK+G YG LRFSL
Sbjct: 216 GGVQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAVLLKMGGYGFLRFSL 275
Query: 420 PIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI 479
P+FP + + + LS ++I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF +
Sbjct: 276 PMFPVGAETMTTFVFILSAVAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQ 335
Query: 480 SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANC 539
+ GAI QM+SH IS A+F+ +G +Y++M TR I+ +GG++N +P +++ F+ F++AN
Sbjct: 336 GVDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANV 395
Query: 540 SLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEF+ +L + N + + ++ +I SAAY+L L + ++F
Sbjct: 396 GLPGTSGFVGEFLTLLGIFQVNTWVALFATSGVILSAAYALWLYRRVVF 444
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +FI
Sbjct: 233 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAVLLKMGGYGFLRFSLPMFPVGAETMTTFVFI 291
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
A+ + L+ + Q D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 292 LSAVAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMLSHG 348
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 349 FISGALFLCVG-VIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 406
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 41/313 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I+ AA K+F+ L S ML + +Y +
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIY---AAFKFFLYTFLGSVLMLVAMVAMYMMA 188
Query: 658 GTLELQSI--FNVIKLN-------NINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ ++ F+ + + V L L + K+ + P H W+PD +
Sbjct: 189 GTTDIVTLMSFDFPHADLPFLGWWTLTGGVQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 248
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPL----VINWQKILLILAIFSLIIG 760
A T + L ++ ++ ++ LP+ + IL+ +++
Sbjct: 249 QAP--------TAGSVVLAAVLLKMGGYGFLRFSLPMFPVGAETMTTFVFILSAVAIVYT 300
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F I
Sbjct: 301 SLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMLSHGF-IS 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA + + + + + T E+ + GL R P ALI M F + G P T GF +F
Sbjct: 352 GALFLCVGVIYDRMH-TREIAAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTL 410
Query: 881 EKIFETQKIWLLL 893
IF+ W+ L
Sbjct: 411 LGIFQVNT-WVAL 422
>gi|295699443|ref|YP_003607336.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia sp. CCGE1002]
gi|295438656|gb|ADG17825.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. CCGE1002]
Length = 518
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/365 (49%), Positives = 274/365 (75%), Gaps = 4/365 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W F+I + +GIDG+SLW + LTA T+II++ S + I ++ A+Y AFL+LSG + G
Sbjct: 69 WSPTFDIAWHVGIDGISLWLVALTALTTIIIVIASWESITQRTAQYYGAFLMLSGFMQGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LDGM+F+I FEATLIP++++IGT+G NR+YAA+KFF + +GSL+ML+S++YLY
Sbjct: 129 FTSLDGMMFFIAFEATLIPLYLLIGTYGHKNRTYAAVKFFFVSFLGSLMMLMSLLYLY-S 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++ W + + + Q +F+ F AF +K+P+WP+HTWLPD H++ PT +V++
Sbjct: 188 QTHSFDLAVWREAHLDMVPQTLIFLGFLAAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIG 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
MLK+G YGLLRF+LPI P AS++F+ ++ITLSL+++IY SL+A+VQ D+++L+AYS++
Sbjct: 248 --MLKIGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYSSLLALVQTDMRRLLAYSTV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLG+F+ + GAI+QMIS+ ++S AM + G LY++ K+ I+ +GG+ N
Sbjct: 306 AHMGLVTLGLFVFNRFGQAGAIVQMISYGVVSGAMLLCTGMLYDRTKSASIAEYGGVANT 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ F ++FS+AN LPGTSGF+GEFM+++ A++FNF IG + +T LI SAAY+L +
Sbjct: 366 MPRFAGFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAIAATTLILSAAYTLWMY 425
Query: 584 KNIIF 588
K +IF
Sbjct: 426 KRVIF 430
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 50 KSAQFPLHTWLPD-SMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +PLHTWLPD ++GPT A+ +I M+ G + + R + P+ + S+ +++
Sbjct: 221 KVPMWPLHTWLPDVHLDGPTGAAVMI---GMLKIGGYGLLRFALPIAPQASHFFAPMMIT 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ + + LL ++Q D++R++AYST++ +G +T+GL V +I ++++
Sbjct: 278 LSLVAVIYSSLLALVQTDMRRLLAYSTVAHMGLVTLGLFVFNRFGQAGAIVQMISYGVVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ L G ++ + + I GG+ MP ++ ++ +G P SGF +
Sbjct: 338 GAMLLCTG-MLYDRTKSASIAEYGGVANTMPRFAGFVMLFSMANIGLPGTSGFVGE 392
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 130/280 (46%), Gaps = 39/280 (13%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ L L + KN + AA+K+F + L S ML + LY T + +L +++
Sbjct: 145 LIPLYLLIGTYGHKNRTY---AAVKFFFVSFLGSLMMLMSLLYLYSQTHSFDL-AVWREA 200
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
L+ + +++ L L K+ + P H W+PDV+ GA+++I +L K+
Sbjct: 201 HLDMVPQTLIFLGFL---AAFGVKVPMWPLHTWLPDVHLDGPTGAAVMIGML-----KIG 252
Query: 726 LFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ L++ LP+ + +++ L++ ++I ++ A+ Q + +R++AYS++AH
Sbjct: 253 GYG-----LLRFALPIAPQASHFFAPMMITLSLVAVIYSSLLALVQTDMRRLLAYSTVAH 307
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELD 841
MGL+ L +FN + + ++ G ++L ++T
Sbjct: 308 MGLVTL----------GLFVFNRFGQAGAIVQMISYGVVS--GAMLLCTGMLYDRTKSAS 355
Query: 842 I--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
I + G+ P A +M+F + G P T GF +F +
Sbjct: 356 IAEYGGVANTMPRFAGFVMLFSMANIGLPGTSGFVGEFMV 395
>gi|83951759|ref|ZP_00960491.1| NADH dehydrogenase subunit M [Roseovarius nubinhibens ISM]
gi|83836765|gb|EAP76062.1| NADH dehydrogenase subunit M [Roseovarius nubinhibens ISM]
Length = 518
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 270/379 (71%), Gaps = 19/379 (5%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDG 289
+I Y +G+DG+S+ F+ LT F+ I I S ++ ++ EYM AFL+L L++G F ALD
Sbjct: 74 DIKYKMGVDGISILFVMLTTFMMPITIAASWNVTTRVKEYMIAFLVLETLMLGVFMALDL 133
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY-------- 341
+LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT +GS+LML++M+ ++
Sbjct: 134 VLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVAMVAMFADAGTTDI 193
Query: 342 ------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++SF++L H L Q LF+ FF +FA+K+P+WP+HTWLPDAHV+AP
Sbjct: 194 VALMKHEFASESFSVLGIHVLGGM---QTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAP 250
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSV+LAAI+LK+G YG LRFSLP+FP + + LI+ +S I+I+Y SL+A+ Q D+K
Sbjct: 251 TAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVLTPLILWMSAIAIVYTSLVALAQQDMK 310
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSS+AHMG+VT+GIF + I GAI QMISH IS A+F+ +G +Y++M TR I
Sbjct: 311 KLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIYDRMHTREID 370
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG++N +P +++ F++F++AN LPGTSGFIGEF+ IL + N + ++ +T +I S
Sbjct: 371 AYGGLVNRMPAYALIFLLFTMANVGLPGTSGFIGEFLTILGVFQVNTWVALVAATGVILS 430
Query: 576 AAYSLCLSKNIIFVLGQMI 594
A Y+L L + + V+G++I
Sbjct: 431 AGYALWLYRRV--VMGELI 447
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + L+ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGADVLTPLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 291 MSAIAIVYTSLVALAQQDMKKLIAYSSVAHMGYVTMGIFAANQQGIDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F LFL G +I + H ++I GGL MP + L+ ++ VG P SGF
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFLLFTMANVGLPGTSGF 402
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 146/313 (46%), Gaps = 40/313 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFLGSVLMLVAMVAMFADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ F+V+ ++ + + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIVALMKHEFASESFSVLGIHVLG-GMQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + L PL++ W ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVLTPLIL-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALAQQDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGIDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P ALI ++F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFLLFTMANVGLPGTSGFIGEFLTIL 410
Query: 882 KIFETQKIWLLLL 894
+F+ W+ L+
Sbjct: 411 GVFQVNT-WVALV 422
>gi|172061023|ref|YP_001808675.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia ambifaria MC40-6]
gi|171993540|gb|ACB64459.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria MC40-6]
Length = 509
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/401 (46%), Positives = 288/401 (71%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I + +L GL ++V P +GF S + + W+ FN + +GIDG SLW + LT
Sbjct: 36 IALVGALAGLAAVV--PLVTGFDSHSAAMQFAETRDWLAAFNAGWRVGIDGASLWLVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TL++++ S + + ++A+Y ++FLILSGL++G F A DG+LF+IFFEATLIP++++I
Sbjct: 94 AFTTLVVVIASWESVTVRVAQYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG +R YAA+KFF + GSLL+L++M+YL+ S+ +F++ +W L + Q+ +F
Sbjct: 154 GTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLFAKSH-TFDMNAWRTLQLGFAPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+LPI PDAS+
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q
Sbjct: 271 FFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
++S+ ++ AM + + L ++ K R I +GG+ V+P F+ F ++F++AN LPGTSGF
Sbjct: 331 LVSYGFVAGAMLLCVSVLVDRTKQREIDAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+ A++ NF IG + + LI SA+Y+L + K ++F
Sbjct: 391 VGEFMVIMGAIRVNFWIGAIAALTLILSASYTLWMVKRVVF 431
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L S++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-SVLVDRTKQREIDAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 126/293 (43%), Gaps = 53/293 (18%)
Query: 604 IYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQ 663
I+ L+ L L + +++ ++ AA+K+F + S +L + L+ + T ++
Sbjct: 140 IFFEATLIPLYLLIGTWGREHRVY---AAVKFFFISFAGSLLLLMAMLYLFAKSHTFDM- 195
Query: 664 SIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLL-- 717
N + + + L L + K+ + P H W+ DVY GA++++ +L
Sbjct: 196 ---NAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLAMLKL 252
Query: 718 ---------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
L TP S F P VI L++F+++ ++ A+ Q
Sbjct: 253 GGYGFLRFALPITPDASHF----------FAPAVIA-------LSLFAIVYASLIALAQT 295
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVI 826
+ +++AYS++AHMG++ L +FN + + +++Y F +
Sbjct: 296 DLGKLLAYSTVAHMGIVTL----------GLFLFNQIGVEGAIVQLVSYGFVAGAMLLCV 345
Query: 827 ILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+L + T K E+D + G+ P A ++F + G P T GF +F +
Sbjct: 346 SVLVDRT--KQREIDAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMV 396
>gi|222148287|ref|YP_002549244.1| NADH dehydrogenase subunit M [Agrobacterium vitis S4]
gi|221735275|gb|ACM36238.1| NADH dehydrogenase I chain M [Agrobacterium vitis S4]
Length = 512
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 266/360 (73%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y LG+DG+S+ F+ LTAF+ +L S ++K++ EYM AFLIL ++IG F +LD
Sbjct: 85 GIAYHLGVDGISMLFVVLTAFLMPFCVLASWTSVQKRIKEYMIAFLILEVMMIGVFVSLD 144
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFEA LIP+FIIIG WGG +R YA+ KFFLYTL+GS+LM+++++ +Y+ + +
Sbjct: 145 IVLFYVFFEAGLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLMMLAIMAMYWDAGTT- 203
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + Q L++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA IMLK
Sbjct: 204 DIAALLAHKFPPHLQTVLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGIMLK 263
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSL +FP AS YF+ + LS+I+IIY SL+A++Q D+KKLIAYSSIAHMG+
Sbjct: 264 LGGYGFIRFSLAMFPLASDYFAPAVFALSVIAIIYTSLVALMQEDMKKLIAYSSIAHMGY 323
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF +QGA+ QMISH +S A+F+ +G +Y++M TR I +GG+ N +P ++
Sbjct: 324 VTMGIFAANTQGLQGAVFQMISHGFVSGALFLCVGVIYDRMHTREIVAYGGLANNMPKYA 383
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ F+IF++AN LPGTSGFIGEF+ ++ A + N + + +T +I SAAY+L L + ++F
Sbjct: 384 LAFMIFTMANVGLPGTSGFIGEFLTLIGAFRANSWVALFAATGVILSAAYALWLYRRVVF 443
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A M+ G + R S +F L++ + +F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVILAGIMLKLGGYGFIRFSLAMFPLASDYFAPAVFA 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ +GY+T+G+ ++F +++H F
Sbjct: 291 LSVIAIIYTSLVALMQEDMKKLIAYSSIAHMGYVTMGIFAANTQGLQGAVFQMISHGFVS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + +I ++ VG P SGF
Sbjct: 351 GALFLCVG-VIYDRMHTREIVAYGGLANNMPKYALAFMIFTMANVGLPGTSGF 402
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 22/273 (8%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
K+ +++S K+F+ +L S M+ I +Y GT ++ ++ + + +
Sbjct: 169 KDRVYASY---KFFLYTLLGSVLMMLAIMAMYWDAGTTDIAALLA----HKFPPHLQTVL 221
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPL 741
L + K+ + P H W+PD + Q + +L KL + I L + PL
Sbjct: 222 WLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGIMLKLGGYGFIRFSL--AMFPL 279
Query: 742 VINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSSIAHMG + I + T
Sbjct: 280 ASDYFAPAVFALSVIAIIYTSLVALMQEDMKKLIAYSSIAHMGYVTMGIFAANT------ 333
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+F +I++ F F + ++ + T E+ + GL P AL MIF
Sbjct: 334 --QGLQGAVFQMISHGFVSGALFLCVGVIYDRM--HTREIVAYGGLANNMPKYALAFMIF 389
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F F W+ L
Sbjct: 390 TMANVGLPGTSGFIGEFLTLIGAFRANS-WVAL 421
>gi|170701545|ref|ZP_02892495.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria IOP40-10]
gi|170133539|gb|EDT01917.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria IOP40-10]
Length = 509
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/401 (46%), Positives = 288/401 (71%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I + +L GL ++V P +GF S + + W+ FN + +GIDG SLW + LT
Sbjct: 36 IALVGALAGLAAVV--PLVTGFDSHSAAMQFAETRDWLAAFNAGWRVGIDGASLWLVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TL++++ S + + ++A+Y ++FLILSGL++G F A DG+LF+IFFEATLIP++++I
Sbjct: 94 AFTTLVVVIASWESVTVRVAQYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG +R YAA+KFF + GSLL+L++M+YL+ S+ +F++ +W L + Q+ +F
Sbjct: 154 GTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLFAKSH-TFDMNAWRTLQLGFAPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+LPI PDAS+
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q
Sbjct: 271 FFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
++S+ ++ AM + + L ++ K R I +GG+ V+P F+ F ++F++AN LPGTSGF
Sbjct: 331 LVSYGFVAGAMLLCVSVLVDRTKQREIDAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+ A++ NF IG + + LI SA+Y+L + K ++F
Sbjct: 391 VGEFMVIMGAIRVNFWIGAIAALTLILSASYTLWMVKRVVF 431
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L S++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-SVLVDRTKQREIDAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 126/293 (43%), Gaps = 53/293 (18%)
Query: 604 IYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQ 663
I+ L+ L L + +++ ++ AA+K+F + S +L + L+ + T ++
Sbjct: 140 IFFEATLIPLYLLIGTWGREHRVY---AAVKFFFISFAGSLLLLMAMLYLFAKSHTFDM- 195
Query: 664 SIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLL-- 717
N + + + L L + K+ + P H W+ DVY GA++++ +L
Sbjct: 196 ---NAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLAMLKL 252
Query: 718 ---------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
L TP S F P VI L++F+++ ++ A+ Q
Sbjct: 253 GGYGFLRFALPITPDASHF----------FAPAVIA-------LSLFAIVYASLIALAQT 295
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVI 826
+ +++AYS++AHMG++ L +FN + + +++Y F +
Sbjct: 296 DLGKLLAYSTVAHMGIVTL----------GLFLFNQIGVEGAIVQLVSYGFVAGAMLLCV 345
Query: 827 ILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+L + T K E+D + G+ P A ++F + G P T GF +F +
Sbjct: 346 SVLVDRT--KQREIDAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMV 396
>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040543|gb|ACT57339.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
Length = 499
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/366 (52%), Positives = 270/366 (73%), Gaps = 4/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WIDYF Y+ LG+DG+S+ + LT F+T IL S I++ EYM AFL+L ++IGA
Sbjct: 70 WIDYFCSYH-LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LD +LFYIFFEA+LIP+F+IIG WGGS R YAA KFFLYT GS+ ML +++ + +
Sbjct: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW- 187
Query: 344 SNKSFNILSWHQLSITKIE-QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
K+ +I+ + +S Q W++I FF +FAIKIP++P HTWLP+AHV+APT GSV L
Sbjct: 188 EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A IMLK+G YG +RF LP+FP AS YF+ +I LSLI+IIY SL++MVQ DIKKLIAYSS
Sbjct: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
IAHMG+VT+GIF K ++GA+ QM+SH L+SSA+F +G +Y+++ TR I +GG+++
Sbjct: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P ++V ++F++AN LPGTSGFIGEF++I+S + + + VL S ++ SA YSL L
Sbjct: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427
Query: 583 SKNIIF 588
+ ++F
Sbjct: 428 YRKVVF 433
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K FP HTWLP++ ++ PT S + + G I + PLF L++ + +I F+
Sbjct: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL--GV-SAYTVSIFHLMTHAFFKA 164
I + L+ ++Q DIK++IAYS+++ +GY+T+G+ G+ S ++F +++H +
Sbjct: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LF G +I + H +DI GGL MP + ++ ++ +G P SGF
Sbjct: 342 ALFFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 21/259 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ S FML+ I ++ T SI ++ ++ S+ +
Sbjct: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKT---SSIIDLYAMSKFPFSIQYWMWIAFFCSF 219
Query: 691 SFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKI 748
+ K+ + PFH W+P+ + Q + L K+ + I R L+ L PL + +
Sbjct: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI-RFLLP-LFPLASQYFAPV 277
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ L++ ++I ++ ++ Q + K++IAYSSIAHMG + I S S +F G
Sbjct: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFI--GLHQRNPWCALIMMIFMFSLAG 866
L + + +F +G ++ DIF GL P A++MM+F + G
Sbjct: 338 L--VSSALFFCVGV----------IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385
Query: 867 FPPTIGFYAKFFIFEKIFE 885
P T GF +F + +F+
Sbjct: 386 LPGTSGFIGEFLVIMSVFQ 404
>gi|119384964|ref|YP_916020.1| NADH dehydrogenase subunit M [Paracoccus denitrificans PD1222]
gi|119374731|gb|ABL70324.1| NADH dehydrogenase subunit M [Paracoccus denitrificans PD1222]
Length = 513
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/385 (47%), Positives = 273/385 (70%), Gaps = 15/385 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+ WI + Y +G+DG+S+ F+ LT F+ + IL + ++ K+ EYM AFL+L GL+
Sbjct: 67 EDHAWI--MGLRYKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS+LML++MI +
Sbjct: 125 IGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAM 184
Query: 341 YYISNKS---------FNILSWHQLSITKIE--QIWLFITFFIAFAIKIPIWPMHTWLPD 389
Y ++ + F ++ L +T + Q+ LF+ FF +FA+K+P+WP+HTWLPD
Sbjct: 185 YRMAGTTDIPTLLTFDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPD 244
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSV+LAA++LK+G YG LRFSLP+FP AS + LS I+I+Y SL+A+
Sbjct: 245 AHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVAL 304
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
Q D+KK+IAYSS+AHMG+VT+G+F +I + GAI QM+SH IS A+F+ +G +Y++M
Sbjct: 305 AQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDRM 364
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I +GG++N +P ++ F+ F++AN LPGTSGF+GEF+ ++ + + + ++ +
Sbjct: 365 HTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVALVAT 424
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMI 594
+ +I SAAY+L L + + LGQ+I
Sbjct: 425 SGVILSAAYALWLYRRV--TLGQLI 447
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT S L+ AA ++ G + R S P+F + S A + +
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVLL-AAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G +GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGE 405
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 142/310 (45%), Gaps = 34/310 (10%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + +Y +
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMIAMYRMA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ ++ + N +L +++ L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLT-FDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW----QKILLILAIFSLIIGNVSA 764
A ++LL+ L + ++ LP+ Q + L+ +++ ++ A
Sbjct: 248 QAPTAGSVLLAAV----LLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVA 303
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFG 824
+ Q + K++IAYSS+AHMG + + + N + D +F ++++ F I GA
Sbjct: 304 LAQSDMKKVIAYSSVAHMGYVTMGVF----AANQI----GVDGAIFQMLSHGF-ISGALF 354
Query: 825 VIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
+ + + + + T E+D + GL R P A + M F + G P T GF +F +F
Sbjct: 355 LCVGVIYDRMH-TREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVF 413
Query: 885 ETQKIWLLLL 894
W+ L+
Sbjct: 414 RVDT-WVALV 422
>gi|260574776|ref|ZP_05842779.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodobacter sp. SW2]
gi|259023193|gb|EEW26486.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhodobacter sp. SW2]
Length = 512
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/391 (47%), Positives = 275/391 (70%), Gaps = 17/391 (4%)
Query: 214 SGFYSKDKKKIWIDYFN----IYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEY 269
+GF D +++ ++ ++Y +G+DG+S+ F+ LT F+ I I ++ ++ EY
Sbjct: 54 AGFDPADTGMQFLEDYDWIVGLHYKMGVDGISVLFVLLTTFLMPITIAACWPVEVRVKEY 113
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M AFL+L L+IG F ALD +LFY+FFEA LIP+F+IIG WGG R YAA KFFLYT +G
Sbjct: 114 MIAFLVLETLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYAAFKFFLYTFLG 173
Query: 330 SLLMLISMIYLYYISNKSFNILSWHQ-------LSITKIE-----QIWLFITFFIAFAIK 377
S+LML++MI +Y + + ++++ Q L I + Q LF+ FF +FA+K
Sbjct: 174 SVLMLVAMIVMY-VQAGTTDMVALMQFDFAHETLGIGGFQIVGGLQTLLFLAFFASFAVK 232
Query: 378 IPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLS 437
IP+WP+HTWLPDAHV+APT GSVILAA+MLK+G YGLLRFSLP+FP + L++ +S
Sbjct: 233 IPMWPVHTWLPDAHVQAPTAGSVILAAVMLKMGGYGLLRFSLPMFPVGAEVLGPLVLWMS 292
Query: 438 LISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSA 497
+I+I+Y SL+A+ Q D+KKLIAYSS+AHMGFVT+GIF + + + GAI QM+SH IS A
Sbjct: 293 VIAIVYTSLVALAQSDMKKLIAYSSVAHMGFVTMGIFAVNQQGVDGAIFQMLSHGFISGA 352
Query: 498 MFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++
Sbjct: 353 LFLIVGVIYDRMHTREIDAYGGLVNRMPVYALIFMFFTMANVGLPGTSGFVGEFLTLVGI 412
Query: 558 VKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + + +T +I SAAY+L L + ++F
Sbjct: 413 FQVNTWVAAVATTGVILSAAYALWLYRRVVF 443
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A ++I AA M+ G + + R S P+F + L ++L+
Sbjct: 232 KIPMWPVHTWLPDAHVQAPT-AGSVILAAVMLKMGGYGLLRFSLPMFPVGAEVLGPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q+D+K++IAYS+++ +G++T+G+ GV +IF +++H
Sbjct: 291 MSVIAIVYTSLVALAQSDMKKLIAYSSVAHMGFVTMGIFAVNQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP+ + + ++ VG P SGF +
Sbjct: 348 FISGALFLIVG-VIYDRMHTREIDAYGGLVNRMPVYALIFMFFTMANVGLPGTSGFVGE 405
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 140/304 (46%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I+ AA K+F+ L S ML + ++Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIY---AAFKFFLYTFLGSVLMLVAMIVMYVQA 188
Query: 658 GTLELQSIFNV--------IKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQG 709
GT ++ ++ I I + L L + K+ + P H W+PD +
Sbjct: 189 GTTDMVALMQFDFAHETLGIGGFQIVGGLQTLLFLAFFASFAVKIPMWPVHTWLPDAHVQ 248
Query: 710 ASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGN 761
A T + L ++ ++ L++ LP+ ++L L +++ +++ +
Sbjct: 249 AP--------TAGSVILAAVMLKMGGYGLLRFSLPMFPVGAEVLGPLVLWMSVIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I ++ D +F ++++ F I G
Sbjct: 301 LVALAQSDMKKLIAYSSVAHMGFVTMGIFAVNQ--------QGVDGAIFQMLSHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A +I+ + + + T E+D + GL R P ALI M F + G P T GF +F
Sbjct: 352 ALFLIVGVIYDRMH-TREIDAYGGLVNRMPVYALIFMFFTMANVGLPGTSGFVGEFLTLV 410
Query: 882 KIFE 885
IF+
Sbjct: 411 GIFQ 414
>gi|163746217|ref|ZP_02153576.1| NADH dehydrogenase subunit M [Oceanibulbus indolifex HEL-45]
gi|161380962|gb|EDQ05372.1| NADH dehydrogenase subunit M [Oceanibulbus indolifex HEL-45]
Length = 520
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/416 (46%), Positives = 284/416 (68%), Gaps = 23/416 (5%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T LI L L P + F D+ W+ + Y LG+DG+S+ F+ LT F+ +
Sbjct: 43 TTVTFLISLFVLFEFDPSNTDFQFVDEAD-WL--LGLKYRLGVDGISILFVMLTTFMMPL 99
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
+I S +++ ++ EYM AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG
Sbjct: 100 VIAASWNVEHRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKE 159
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYLYY------ISNKSFNILSWHQLSITKIE------ 362
R YA+ KFFLYT +GS+LML++M+ ++ I ++L+ H E
Sbjct: 160 RIYASFKFFLYTFLGSVLMLVAMVAMFTEAGTTCIGGCEISLLT-HNFGSDNFELLGIQV 218
Query: 363 ----QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q +F+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFS
Sbjct: 219 VGGMQTLMFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFS 278
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LP+FP + + LI+ +S I+I+Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF +
Sbjct: 279 LPMFPVGAEVMTPLILWMSAIAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFAANQ 338
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
I GAI QMISH IS A+F+S+G +Y++M TR I +GG++N +P +++ F+ F++AN
Sbjct: 339 QGIDGAIFQMISHGFISGALFLSVGVIYDRMHTRDIDAYGGLVNRMPAYAMVFMFFTMAN 398
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
LPGTSGF+GEF+ +++ + N + + +T +IFSAAY+L L + + V+G +I
Sbjct: 399 VGLPGTSGFVGEFLTLMATFQVNTWVAAVATTGVIFSAAYALWLYRRV--VMGDLI 452
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +IL+
Sbjct: 237 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTPLILW 295
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 296 MSAIAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMISHG 352
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFLS G +I + H +DI GGL MP + + ++ VG P SGF +
Sbjct: 353 FISGALFLSVG-VIYDRMHTRDIDAYGGLVNRMPAYAMVFMFFTMANVGLPGTSGFVGE 410
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 47/310 (15%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ L S ML + ++
Sbjct: 133 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFLGSVLMLVAMVAMFTEA 189
Query: 658 GTL-----ELQSIFNVIKLNNINC-------SVLALSLLLIIVGLSFKLGISPFHMWVPD 705
GT E+ + + +N + L L + K+ + P H W+PD
Sbjct: 190 GTTCIGGCEISLLTHNFGSDNFELLGIQVVGGMQTLMFLAFFASFAVKMPMWPVHTWLPD 249
Query: 706 VY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLI 758
+ G+ ++ +LL L + ++ + + + PL++ W ++ +++
Sbjct: 250 AHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTPLIL-W------MSAIAIV 302
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF- 817
++ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F
Sbjct: 303 YTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMISHGFI 354
Query: 818 --AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYA 875
A+ + GVI T ++D + GL R P A++ M F + G P T GF
Sbjct: 355 SGALFLSVGVI-----YDRMHTRDIDAYGGLVNRMPAYAMVFMFFTMANVGLPGTSGFVG 409
Query: 876 KFFIFEKIFE 885
+F F+
Sbjct: 410 EFLTLMATFQ 419
>gi|406708275|ref|YP_006758627.1| NADH dehydrogenase subunit M [alpha proteobacterium HIMB59]
gi|406654051|gb|AFS49450.1| NADH dehydrogenase subunit M [alpha proteobacterium HIMB59]
Length = 484
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/373 (49%), Positives = 269/373 (72%), Gaps = 2/373 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y + W D F+I Y+LG+DG+S+ I LT F+ I +L S + I+ ++ E++ FL+
Sbjct: 62 YQFTEYHTWFDKFDINYYLGVDGVSIPLILLTTFLVPICLLCSWNSIQNRVKEFVIYFLL 121
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
L IIG F ++D ++FY+FFEA LIP+F+IIG WGG NR YA KFFLYTL GS+LML+
Sbjct: 122 LESFIIGVFVSVDLVIFYVFFEAVLIPMFLIIGIWGGENRLYATFKFFLYTLAGSVLMLL 181
Query: 336 SMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
++IY+ I+N NI + + Q+ LF+ FF +FA+K+P++P HTWLPDAHV+AP
Sbjct: 182 AIIYIISITNTG-NIEIISKFVFAENIQLILFLCFFASFAVKVPMFPFHTWLPDAHVQAP 240
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LKLG YG +R S+P F ASYYF LI +LS I+I+Y S++A+ Q D+K
Sbjct: 241 TSGSVILAGVLLKLGAYGFMRLSIPFFEFASYYFQPLIFSLSCIAIVYTSIVALRQTDMK 300
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
K+IAYSS+AHMGFVT+GIF LT+ + GA QMISH ++S+A+F+ +G +Y + TR+I+
Sbjct: 301 KMIAYSSVAHMGFVTIGIFTLTQDGMNGAYFQMISHGIVSAALFLIVGVVYERHHTRMIA 360
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
++ G+ N++P +S FF++F L++ LPGTSGF+GEF++I+S + N + + T+ +I
Sbjct: 361 DYSGVTNIMPRYSFFFMVFMLSSVGLPGTSGFVGEFLVIMSTISVNVYLTIFTAVGVILG 420
Query: 576 AAYSLCLSKNIIF 588
A+Y L L KN+ F
Sbjct: 421 ASYMLLLYKNVNF 433
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K FP HTWLPD+ ++ PT S ++ A ++ G + R+S P FE ++ ++F
Sbjct: 221 VKVPMFPFHTWLPDAHVQAPTSGSVIL-AGVLLKLGAYGFMRLSIPFFEFASYYFQPLIF 279
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + ++ + Q D+K++IAYS+++ +G++T+G L + F +++H
Sbjct: 280 SLSCIAIVYTSIVALRQTDMKKMIAYSSVAHMGFVTIGIFTLTQDGMNGAYFQMISHGIV 339
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G ++ H + I + G+ MP ++ +LS VG P SGF
Sbjct: 340 SAALFLIVG-VVYERHHTRMIADYSGVTNIMPRYSFFFMVFMLSSVGLPGTSGF 392
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 24/254 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A K+F+ + S ML I + IT T ++ I + NI + L
Sbjct: 164 ATFKFFLYTLAGSVLMLLAIIYIISITNTGNIEIISKFVFAENIQL----ILFLCFFASF 219
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
+ K+ + PFH W+PD + G+ I+ +LL KL + + RL I +
Sbjct: 220 AVKVPMFPFHTWLPDAHVQAPTSGSVILAGVLL----KLGAYGFM-RLSIPFFEFASYYF 274
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
Q ++ L+ +++ ++ A+ Q + K+MIAYSS+AHMG + I ++ N F
Sbjct: 275 QPLIFSLSCIAIVYTSIVALRQTDMKKMIAYSSVAHMGFVTIGIFTLTQDGMNGAYFQMI 334
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
G+ + +F I+G ++ +++T D + G+ P + M+FM S
Sbjct: 335 SHGI--VSAALFLIVG----VVYERHHTRMIAD----YSGVTNIMPRYSFFFMVFMLSSV 384
Query: 866 GFPPTIGFYAKFFI 879
G P T GF +F +
Sbjct: 385 GLPGTSGFVGEFLV 398
>gi|254450084|ref|ZP_05063521.1| NADH-quinone oxidoreductase chain m [Octadecabacter arcticus 238]
gi|198264490|gb|EDY88760.1| NADH-quinone oxidoreductase chain m [Octadecabacter arcticus 238]
Length = 513
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/442 (43%), Positives = 295/442 (66%), Gaps = 23/442 (5%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG-APFFSGFYSKDKKKIWI 226
++AG + + ++ + + + M T +T L+ L L+G P +GF +++ WI
Sbjct: 14 IAAGILALFLRGDDEAAQRNAKWLAMAATAMTFLVSLFILIGFNPQDTGFQFVEERT-WI 72
Query: 227 DYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCA 286
N Y +G+DG+S+ F+ LT F+ I+I + ++ EYM AFL+L L++G F A
Sbjct: 73 MGLN--YKMGVDGISILFVMLTTFLMPIVIASCWSVNTRVKEYMIAFLLLETLMLGVFMA 130
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD +LFY+FFEA LIP+F+IIG WGG+NR YA+ KFFLYT +GS+LML++M+ +Y +
Sbjct: 131 LDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMVGMYSAAGT 190
Query: 347 S--------------FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
+ F IL + I Q L++ FF +FA+K+P+WP HTWLPDAHV
Sbjct: 191 TDIPSLMGFPFGTDDFAILG---IQIVGGMQTLLWLAFFASFAVKMPMWPFHTWLPDAHV 247
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
+APT GSV+LA+I+LK+G YG LRFSLP+FP S + L++ +S I+I+Y SL+A+VQ
Sbjct: 248 QAPTAGSVVLASILLKMGGYGFLRFSLPMFPVGSDVMAPLVLWMSAIAIVYTSLVALVQE 307
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSS+AHMGFVT+GIF + + GAI QMISH I+ A+F+ +G +Y++M TR
Sbjct: 308 DMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIAGALFLCVGVIYDRMHTR 367
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I +GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++ + N + + ++ +
Sbjct: 368 DIDAYGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWVAAVATSGV 427
Query: 573 IFSAAYSLCLSKNIIFVLGQMI 594
I SAAY+L L + + V+G +I
Sbjct: 428 ILSAAYALWLYRRV--VMGDLI 447
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P HTWLPD+ ++ PT A +++ A+ ++ G + R S P+F + + ++ ++L+
Sbjct: 232 KMPMWPFHTWLPDAHVQAPT-AGSVVLASILLKMGGYGFLRFSLPMFPVGSDVMAPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ +IF +++H F
Sbjct: 291 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIA 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H +DI GGL MP + + ++ VG P SGF +
Sbjct: 351 GALFLCVG-VIYDRMHTRDIDAYGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGE 405
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I N I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVGMYSAA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ S+ + ++L + + L + K+ + PFH W+PD +
Sbjct: 189 GTTDIPSLMG-FPFGTDDFAILGIQIVGGMQTLLWLAFFASFAVKMPMWPFHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ ++LL L + ++ + + PLV+ W ++ +++ +
Sbjct: 248 QAPTAGSVVLASILLKMGGYGFLRFSLPMFPVGSDVMAPLVL-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQ--------QGLDGAIFQMISHGF-IAG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T ++D + GL R P A+I M F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TRDIDAYGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGEFLTLV 410
Query: 882 KIFE 885
+F+
Sbjct: 411 GVFQ 414
>gi|126740393|ref|ZP_01756081.1| NADH dehydrogenase subunit M [Roseobacter sp. SK209-2-6]
gi|126718529|gb|EBA15243.1| NADH dehydrogenase subunit M [Roseobacter sp. SK209-2-6]
Length = 515
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/378 (47%), Positives = 267/378 (70%), Gaps = 19/378 (5%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
WI F + Y +G+DG+S+ F+ LT F+ + IL S ++ ++ EYM AFL+L L++G F
Sbjct: 71 WI--FGLQYKMGVDGISVLFVLLTTFVMPLTILASWNVTTRVKEYMIAFLMLETLMLGVF 128
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-- 342
ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT +GS+LML++M+ +Y
Sbjct: 129 MALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVAMVAMYADA 188
Query: 343 ------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
S SF++L H + Q +F+ FF +FA+K+P+WP+HTWLPDA
Sbjct: 189 GTTDIEALLKHSFSAGSFDVLGIH---VVGGMQTLMFLAFFASFAVKMPMWPVHTWLPDA 245
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
HV+APT GSV+LAAI+LK+G YG LRFSLP+FP + ++LI+ +S I+++Y SL+AMV
Sbjct: 246 HVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYTSLVAMV 305
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q D+KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+A+F+ +G +Y++M
Sbjct: 306 QEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYDRMH 365
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
TR I +GG++ +P +++ F+ F++ N LPGTSGF+GEF+ ++ + N + + ++
Sbjct: 366 TRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGTFQKNTWVAAVAAS 425
Query: 571 ALIFSAAYSLCLSKNIIF 588
+IFSA Y+L L + ++F
Sbjct: 426 GVIFSAGYALWLYRRVVF 443
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 MSAIAVVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F A LFL G +I + H +DI GGL MP + + + VG P SGF +
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGE 405
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 138/311 (44%), Gaps = 42/311 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFLGSVLMLVAMVAMYADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT +++++ F+V+ ++ + + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIEALLKHSFSAGSFDVLGIHVVG-GMQTLMFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++ L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T ++D + GL R P AL+ M F G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTL 409
Query: 881 EKIFETQKIWL 891
F+ + W+
Sbjct: 410 MGTFQ-KNTWV 419
>gi|400753924|ref|YP_006562292.1| NADH-quinone oxidoreductase subunit M [Phaeobacter gallaeciensis
2.10]
gi|398653077|gb|AFO87047.1| NADH-quinone oxidoreductase subunit M [Phaeobacter gallaeciensis
2.10]
Length = 515
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/392 (47%), Positives = 272/392 (69%), Gaps = 20/392 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++ + WI F + Y +G+DG+S+ F+ LT F+ + IL S + ++ EYM
Sbjct: 58 PSDTGFQFVEEAE-WI--FGLKYKMGVDGISVLFVMLTTFVMPLTILASWGVNTRVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT GS
Sbjct: 115 IAFLMLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFFGS 174
Query: 331 LLMLISMIYLYY--------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAI 376
+LML++M+ +Y S SF++L H + Q LF+ FF +FA+
Sbjct: 175 VLMLVAMVAMYADAGTTDIAQLLTHSFSAGSFDLLGIH---VVGGMQTLLFLAFFASFAV 231
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITL 436
K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + ++LI+ +
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWM 291
Query: 437 SLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISS 496
S I+++Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+
Sbjct: 292 SAIAVVYTSLVALVQSDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISA 351
Query: 497 AMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS 556
A+F+ +G +Y++M TR I +GG++ +P +++ F+ F++ N LPGTSGFIGEF+ ++
Sbjct: 352 ALFLCVGVIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMG 411
Query: 557 AVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + + +T +IFSA Y+L L + ++F
Sbjct: 412 TFQKNTWVAAVAATGVIFSAGYALWLYRRVVF 443
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q+D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 MSAIAVVYTSLVALVQSDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + + + VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGF 402
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 135/311 (43%), Gaps = 42/311 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFFGSVLMLVAMVAMYADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ + F+++ ++ + + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIAQLLTHSFSAGSFDLLGIHVVG-GMQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++ L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVALVQSDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T ++D + GL R P AL+ M F G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTL 409
Query: 881 EKIFETQKIWL 891
F+ + W+
Sbjct: 410 MGTFQ-KNTWV 419
>gi|383316689|ref|YP_005377531.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Frateuria aurantia DSM 6220]
gi|379043793|gb|AFC85849.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Frateuria aurantia DSM 6220]
Length = 502
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/377 (49%), Positives = 262/377 (69%), Gaps = 14/377 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W + Y LG+DG++ L F T+++IL S I KL +Y + L++ GL+IG
Sbjct: 68 WGGPIHTAYALGVDGIAFAMCLLVTFGTMLVILGSWGSITYKLKQYFACMLVMEGLLIGC 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D +LFY+FFE LIP+F++IG WGG R YAA+KFF+YT GS+++L ++IYLY
Sbjct: 128 FAATDALLFYVFFEGMLIPMFLLIGVWGGPRRMYAAMKFFIYTFFGSIMLLAALIYLY-T 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+F+I + L + +Q WLF F IAFA+KIP+ P+HTWLPDAHVEAPT SV LA
Sbjct: 187 QAGTFDIATLAALKLDHTQQTWLFFAFLIAFAVKIPMVPVHTWLPDAHVEAPTGASVDLA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
IMLK+G YGL+RFSLPI PDAS ++ L+I LSL++IIYI +AMVQ D+K+++AYSS+
Sbjct: 247 MIMLKIGGYGLIRFSLPIVPDASAEYAWLVIGLSLVAIIYIGYVAMVQDDMKRIMAYSSV 306
Query: 464 AHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKT 511
AHMGFVTLGIF+ L + +QGA+IQM+SH IS A F IG LY++M T
Sbjct: 307 AHMGFVTLGIFVAVELIHTHGDSDLAVLGMQGAMIQMVSHGFISGAAFTCIGILYDRMHT 366
Query: 512 RLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA 571
RLI ++GG+IN +P F +FF++F + N LPGTSGF+GEFM+++S+ N + + +
Sbjct: 367 RLIKDYGGVINTMPWFGLFFVLFMMGNNGLPGTSGFVGEFMVVISSFSLNPWVALGAAFT 426
Query: 572 LIFSAAYSLCLSKNIIF 588
L+ SAAY+L + K +++
Sbjct: 427 LVISAAYTLWMVKRVLW 443
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 123/261 (47%), Gaps = 26/261 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+FI S +L + LY GT ++ ++ +KL++ + L + L +
Sbjct: 162 AAMKFFIYTFFGSIMLLAALIYLYTQAGTFDIATL-AALKLDHTQQTWLFFAFL---IAF 217
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A T + L +I+ ++ LI+ LP+V +
Sbjct: 218 AVKIPMVPVHTWLPDAHVEAP--------TGASVDLAMIMLKIGGYGLIRFSLPIVPDAS 269
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS----IKTSHNN 798
+ +++ L++ ++I A+ Q + KR++AYSS+AHMG + I I T ++
Sbjct: 270 AEYAWLVIGLSLVAIIYIGYVAMVQDDMKRIMAYSSVAHMGFVTLGIFVAVELIHTHGDS 329
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+ + ++++ F AF I +L + T + + G+ PW L +
Sbjct: 330 DLAVLGMQGAMIQMVSHGFISGAAFTCIGILYDRM--HTRLIKDYGGVINTMPWFGLFFV 387
Query: 859 IFMFSLAGFPPTIGFYAKFFI 879
+FM G P T GF +F +
Sbjct: 388 LFMMGNNGLPGTSGFVGEFMV 408
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K P+HTWLPD+ +E PT AS + A M+ G + + R S P+ ++ + +++
Sbjct: 220 KIPMVPVHTWLPDAHVEAPTGASVDL-AMIMLKIGGYGLIRFSLPIVPDASAEYAWLVIG 278
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------- 151
+ + ++G + ++Q+D+KRI+AYS+++ +G++T+G+ V+ +
Sbjct: 279 LSLVAIIYIGYVAMVQDDMKRIMAYSSVAHMGFVTLGIFVAVELIHTHGDSDLAVLGMQG 338
Query: 152 SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
++ +++H F F G I+ + H + I++ GG+ MP + ++ ++ G P
Sbjct: 339 AMIQMVSHGFISGAAFTCIG-ILYDRMHTRLIKDYGGVINTMPWFGLFFVLFMMGNNGLP 397
Query: 212 FFSGFYSK 219
SGF +
Sbjct: 398 GTSGFVGE 405
>gi|254437407|ref|ZP_05050901.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Octadecabacter antarcticus 307]
gi|198252853|gb|EDY77167.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Octadecabacter antarcticus 307]
Length = 513
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/484 (41%), Positives = 310/484 (64%), Gaps = 22/484 (4%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
++AG + + ++ + + + M T +T L+ L L G + +++ WI
Sbjct: 14 IAAGILAVFLRDDNEAAQRNAKWLAMAATTMTFLVSLFILFGFDAQDTGFQFVEERTWIM 73
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCAL 287
N Y +G+DG+S+ F+ LT F+ I+I + ++ EYM AFL+L L++G F AL
Sbjct: 74 GLN--YKMGVDGISILFVMLTTFLMPIVIASCWTVNTRVKEYMIAFLLLETLMLGVFMAL 131
Query: 288 DGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS 347
D +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS+LML++M+ ++ + +
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMVGMFSAAGTT 191
Query: 348 ---------FNILSWHQLSITKIE--QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPT 396
FN + L I + Q L++ FF +FA+K+P+WP+HTWLPDAHV+APT
Sbjct: 192 DIPSLMGFPFNTDDFAILGIQIVGGMQTLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPT 251
Query: 397 EGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKK 456
GSV+LAAI+LK+G YG LRFSLP+FP S + L++ +S I+I+Y SL+A+VQ D+KK
Sbjct: 252 AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLVLWMSAIAIVYTSLVALVQEDMKK 311
Query: 457 LIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISN 516
LIAYSS+AHMGFVT+GIF + + GAI QMISH IS A+F+ +G +Y++M TR I
Sbjct: 312 LIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISGALFLCVGVIYDRMHTREIDA 371
Query: 517 FGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSA 576
+GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++ + N + + ++ +I SA
Sbjct: 372 YGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWVAAVATSGVILSA 431
Query: 577 AYSLCLSKNIIFVLGQMIMISGNNLLS-------IYLGLELMSLTLCVLIASQKNNIFSS 629
AY+L L + + V+G +I S + I+ L +M+L L V A + I S
Sbjct: 432 AYALWLYRRV--VMGDLIKESLKTITDMTTRERWIFTPLVVMTLLLGVYPALVTDIIGPS 489
Query: 630 EAAI 633
AA+
Sbjct: 490 VAAL 493
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ +IF +++H F
Sbjct: 291 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 351 GALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGE 405
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 139/304 (45%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMVGMFSAA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ S+ N + ++L + + L + K+ + P H W+PD +
Sbjct: 189 GTTDIPSLMG-FPFNTDDFAILGIQIVGGMQTLLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + PLV L ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLV-------LWMSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQ--------QGLDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P A+I M F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGEFLTLV 410
Query: 882 KIFE 885
+F+
Sbjct: 411 GVFQ 414
>gi|266663|sp|P29925.1|NQO13_PARDE RecName: Full=NADH-quinone oxidoreductase chain 13; AltName:
Full=NADH dehydrogenase I, chain 13; AltName:
Full=NDH-1, chain 13
gi|150615|gb|AAA25599.1| NADH dehydrogenase [Paracoccus denitrificans]
Length = 513
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/385 (47%), Positives = 273/385 (70%), Gaps = 15/385 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+ WI + Y +G+DG+S+ F+ LT F+ + IL + ++ K+ EYM AFL+L GL+
Sbjct: 67 EDHAWI--MGVCYKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS+LML++MI +
Sbjct: 125 IGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAM 184
Query: 341 YYISNKS---------FNILSWHQLSITKIE--QIWLFITFFIAFAIKIPIWPMHTWLPD 389
Y ++ + F ++ L +T + Q+ LF+ FF +FA+K+P+WP+HTWLPD
Sbjct: 185 YRMAGTTDIPTLLTFDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPD 244
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSV+LAA++LK+G YG LRFSLP+FP AS + LS I+I+Y SL+A+
Sbjct: 245 AHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVAL 304
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
Q D+KK+IAYSS+AHMG+VT+G+F +I + GAI QM+SH IS A+F+ +G +Y++M
Sbjct: 305 AQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDRM 364
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I +GG++N +P ++ F+ F++AN LPGTSGF+GEF+ ++ + + + ++ +
Sbjct: 365 HTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVALVAT 424
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMI 594
+ +I SAAY+L L + + LGQ+I
Sbjct: 425 SGVILSAAYALWLYRRV--TLGQLI 447
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT S L+ AA ++ G + R S P+F + S A + +
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVLL-AAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G +GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGE 405
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 141/307 (45%), Gaps = 28/307 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + +Y +
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMIAMYRMA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ ++ + N +L +++ L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLT-FDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN-WQKILLILAIFSLIIGNVSAITQ 767
A ++LL+ L + + + P+ Q + L+ +++ ++ A+ Q
Sbjct: 248 QAPTAGSVLLAAV-LLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVALAQ 306
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
+ K++IAYSS+AHMG + + + N + D +F ++++ F I GA + +
Sbjct: 307 SDMKKVIAYSSVAHMGYVTMGVF----AANQI----GVDGAIFQMLSHGF-ISGALFLCV 357
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ + + T E+D + GL R P A + M F + G P T GF +F +F
Sbjct: 358 GVIYDRMH-TREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVD 416
Query: 888 KIWLLLL 894
W+ L+
Sbjct: 417 T-WVALV 422
>gi|399992251|ref|YP_006572491.1| NADH-quinone oxidoreductase subunit M [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398656806|gb|AFO90772.1| NADH-quinone oxidoreductase subunit M [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 515
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/392 (47%), Positives = 272/392 (69%), Gaps = 20/392 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++ + WI F + Y +G+DG+S+ F+ LT F+ + IL S + ++ EYM
Sbjct: 58 PSDTGFQFVEEAE-WI--FGLKYKMGVDGISVLFVMLTTFVMPLTILASWGVNTRVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT GS
Sbjct: 115 IAFLMLETLMLGVFIALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFFGS 174
Query: 331 LLMLISMIYLYY--------------ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAI 376
+LML++M+ +Y S SF++L H + Q LF+ FF +FA+
Sbjct: 175 VLMLVAMVAMYADAGTTDIAQLLTHSFSAGSFDLLGIH---VVGGMQTLLFLAFFASFAV 231
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITL 436
K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + ++LI+ +
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWM 291
Query: 437 SLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISS 496
S I+++Y SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF + I GAI QM+SH IS+
Sbjct: 292 SAIAVVYTSLVALVQSDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISA 351
Query: 497 AMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS 556
A+F+ +G +Y++M TR I +GG++ +P +++ F+ F++ N LPGTSGFIGEF+ ++
Sbjct: 352 ALFLCVGVIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMG 411
Query: 557 AVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + + +T +IFSA Y+L L + ++F
Sbjct: 412 TFQKNTWVAAVAATGVIFSAGYALWLYRRVVF 443
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 103/176 (58%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q+D+K++IAYS+++ +G++T+G+ G+ +IF +++H
Sbjct: 291 MSAIAVVYTSLVALVQSDMKKLIAYSSVAHMGFVTMGIFAANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F A LFL G +I + H +DI GGL MP + + + VG P SGF
Sbjct: 348 FISAALFLCVG-VIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGF 402
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 135/311 (43%), Gaps = 42/311 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFFGSVLMLVAMVAMYADA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ + F+++ ++ + + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIAQLLTHSFSAGSFDLLGIHVVG-GMQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++ L ++ +++
Sbjct: 248 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYT 299
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 300 SLVALVQSDMKKLIAYSSVAHMGFVTMGIFAANQ--------QGIDGAIFQMLSHGFISA 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
F + ++ + T ++D + GL R P AL+ M F G P T GF +F
Sbjct: 352 ALFLCVGVIYDRM--HTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTL 409
Query: 881 EKIFETQKIWL 891
F+ + W+
Sbjct: 410 MGTFQ-KNTWV 419
>gi|261213817|ref|ZP_05928098.1| NADH dehydrogenase subunit M [Brucella abortus bv. 3 str. Tulya]
gi|260915424|gb|EEX82285.1| NADH dehydrogenase subunit M [Brucella abortus bv. 3 str. Tulya]
Length = 395
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 250/321 (77%), Gaps = 2/321 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+S+ F+ L+AF+ IL S + ++K++ EYM AFLIL L+IG FCALD
Sbjct: 76 GISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
LFY+FFEA+LIP+FIIIG WGG R YA++KFFLYTL+GS+LMLI+++ +Y+ + +
Sbjct: 136 LFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLIAIMAMYWQAG-TM 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
NI+ Q + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 NIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP AS F+ I TLS+++IIY SL+AMVQ D+KKLIAYSS+AHM +
Sbjct: 255 LGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAY 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF + +QGAI QM+SH ++S A+F+ +G +Y++M TR I+ FGG++N +P ++
Sbjct: 315 VTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMPKYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIG 549
V F+IF++AN LPGTSGFIG
Sbjct: 375 VAFLIFTMANVGLPGTSGFIG 395
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + Y+T+G+ + +IF +++H
Sbjct: 282 LSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + LI ++ VG P SGF
Sbjct: 342 GALFLCVG-VIYDRMHTREIAAFGGLVNNMPKYAVAFLIFTMANVGLPGTSGF 393
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 34/253 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
A++K+F+ +L S ML I +Y GT+ N+++L N S+ L
Sbjct: 165 ASLKFFLYTLLGSVLMLIAIMAMYWQAGTM------NIVELLQYNFPASMQTWLWLAFFA 218
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV-- 742
+ K+ + P H W+PD + A +++L+ I+ +L I+ LP+
Sbjct: 219 SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKLGGYGFIRFSLPMFPL 270
Query: 743 --INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L++ ++I ++ A+ Q + K++IAYSS+AHM + I +
Sbjct: 271 ASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAHMAYVTMGIFAANEQGLQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ F GL P A+ +IF
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRMH-TREIAAFGGLVNNMPKYAVAFLIF 380
Query: 861 MFSLAGFPPTIGF 873
+ G P T GF
Sbjct: 381 TMANVGLPGTSGF 393
>gi|171318684|ref|ZP_02907828.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria MEX-5]
gi|171096119|gb|EDT41044.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia ambifaria MEX-5]
Length = 509
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/401 (46%), Positives = 287/401 (71%), Gaps = 12/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFNIYYFLGIDGLSLWFIPLT 248
I + +L GL ++V P +GF + + + W+ FN + +GIDG SLW + LT
Sbjct: 36 IALVGALAGLAAVV--PLVTGFDAHSAAMQFGESRDWLAAFNAGWRVGIDGASLWLVVLT 93
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
AF TLI+++ S + + + A+Y ++FLILSGL++G F A DG+LF+IFFEATLIP++++I
Sbjct: 94 AFTTLIVVIASWESVTVRAAQYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLI 153
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
GTWG +R YAA+KFF + GSLL+L++M+YL+ S+ +F++ +W L + Q+ +F
Sbjct: 154 GTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLFAKSH-TFDMNAWRMLQLGFAPQLLVF 212
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+LPI PDAS+
Sbjct: 213 LGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASH 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q
Sbjct: 271 FFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQ 330
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
++S+ ++ AM + + L ++ K R I +GG+ V+P F+ F ++F++AN LPGTSGF
Sbjct: 331 LVSYGFVAGAMLLCVSVLVDRTKQREIGAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEFM+I+ A++ NF IG + + LI SA+Y+L + K ++F
Sbjct: 391 VGEFMVIMGAIRVNFWIGAIAALTLILSASYTLWMVKRVVF 431
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 274
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + L+ + Q D+ +++AYST++ +G +T+GL GV +I L
Sbjct: 275 AVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTLGLFLFNQIGVEG---AIVQL 331
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L S++++ ++I GG+ MP +L+ ++ VG P SGF
Sbjct: 332 VSYGFVAGAMLLCV-SVLVDRTKQREIGAYGGVAGVMPRFATFALLFAMANVGLPGTSGF 390
Query: 217 YSK 219
+
Sbjct: 391 VGE 393
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 129/295 (43%), Gaps = 57/295 (19%)
Query: 604 IYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQ 663
I+ L+ L L + +++ ++ AA+K+F + S +L + L+ + T ++
Sbjct: 140 IFFEATLIPLYLLIGTWGREHRVY---AAVKFFFISFAGSLLLLMAMLYLFAKSHTFDM- 195
Query: 664 SIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLL-- 717
N ++ + + L L + K+ + P H W+ DVY GA++++ +L
Sbjct: 196 ---NAWRMLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLAMLKL 252
Query: 718 ---------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
L TP S F P VI L++F+++ ++ A+ Q
Sbjct: 253 GGYGFLRFALPITPDASHF----------FAPAVIA-------LSLFAIVYASLIALAQT 295
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVI 826
+ +++AYS++AHMG++ L +FN + + +++Y F G +
Sbjct: 296 DLGKLLAYSTVAHMGIVTL----------GLFLFNQIGVEGAIVQLVSYGFVA----GAM 341
Query: 827 ILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+L + ++T + +I + G+ P A ++F + G P T GF +F +
Sbjct: 342 LLCVSVLVDRTKQREIGAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMV 396
>gi|374575836|ref|ZP_09648932.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bradyrhizobium sp. WSM471]
gi|374424157|gb|EHR03690.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bradyrhizobium sp. WSM471]
Length = 502
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/369 (50%), Positives = 266/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S I ++ EYM AFLIL L
Sbjct: 68 EKANWLAT-GITYHMGVDGISLPLVILTTAIMPFCIIASWKAITNRVREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYW-NGGTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VVLAAIMLKMGGYGFLRFSLPMFPLASHDFAPLMFTLSAIAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGIVYDRMHTRDIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 366 LVNRMPLYALTFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSACYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA M+ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGGYGFLRFSLPMFPLASHDFAPLMFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I+ + H +DI GGL MP+ +T ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-IVYDRMHTRDIAAYGGLVNRMPLYALTFMVFTMANVGLPGTSGFVGE 396
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 34/265 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNGGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAIMLKMGGYGFLRFSLPMFPLAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 HDFAPLMFTLSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------M 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIF 860
G+F +I++ I+ G + L ++ DI + GL R P AL M+F
Sbjct: 325 QGVAGGVFQMISH--GIVS--GALFLCVGIVYDRMHTRDIAAYGGLVNRMPLYALTFMVF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 381 TMANVGLPGTSGFVGEFMTLLGTFK 405
>gi|260428146|ref|ZP_05782125.1| NADH-quinone oxidoreductase subunit m [Citreicella sp. SE45]
gi|260422638|gb|EEX15889.1| NADH-quinone oxidoreductase subunit m [Citreicella sp. SE45]
Length = 516
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/382 (47%), Positives = 270/382 (70%), Gaps = 19/382 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
++ WI N Y +G+DG+S+ F+ LT FI + IL S +K ++ EYM AFL+L L+
Sbjct: 67 EEGSWIMGLN--YKMGVDGISVLFVMLTTFIMPLTILSSWGVKTRVKEYMIAFLMLETLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G F ALD +LFY+FFEA LIP+F+IIG WGG NR YA+ KFFLYT +GS+LML++M+ +
Sbjct: 125 LGVFMALDLVLFYMFFEAGLIPMFLIIGIWGGQNRIYASFKFFLYTFLGSVLMLVAMVAM 184
Query: 341 YYISNKS--------------FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
Y + + F++L H + Q L++ FF +FA+K+P+WP+HTW
Sbjct: 185 YVDAGTTDIPTLLRHEFAFADFSVLGIH---VVGGMQTMLWLAFFASFAVKMPMWPVHTW 241
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S + L+ +S I+I+Y SL
Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVFWMSAIAIVYTSL 301
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+VQ D+KKLIAYSS+AHMG+VT+GIF + + GAI QM+SH +S A+F+ +G +Y
Sbjct: 302 VALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFVSGALFLCVGVIY 361
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++M TR I +GG++N +P +++ F++F++AN LPGTSGF+GEF+ ++ + N +
Sbjct: 362 DRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFVGEFLTLMGIFQVNTWVAF 421
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+ ++ +IFSAAY+L L + ++F
Sbjct: 422 VAASGVIFSAAYALWLYRRVVF 443
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 291 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 348 FVSGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFVGE 405
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 140/304 (46%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ Y+ E L+ + L + I +N I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYMFFEAGLIPMFLIIGIWGGQNRIYAS---FKFFLYTFLGSVLMLVAMVAMYVDA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ F+V+ ++ + + + L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLRHEFAFADFSVLGIHVVG-GMQTMLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + + PLV W ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVF-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F
Sbjct: 301 LVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMLSHGFVSGA 352
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
F + ++ + T E+D + GL R P ALI M+F + G P T GF +F
Sbjct: 353 LFLCVGVIYDRM--HTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFVGEFLTLM 410
Query: 882 KIFE 885
IF+
Sbjct: 411 GIFQ 414
>gi|126729573|ref|ZP_01745386.1| NADH dehydrogenase subunit M [Sagittula stellata E-37]
gi|126709692|gb|EBA08745.1| NADH dehydrogenase subunit M [Sagittula stellata E-37]
Length = 522
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/400 (47%), Positives = 280/400 (70%), Gaps = 22/400 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++ + W+ + Y +G+DG+S+ F+ LT F+ ++I S ++ ++ EYM
Sbjct: 58 PSNTGFQMVEEGE-WL--MGLSYRMGVDGISVLFVMLTTFMMPLVIWASWNVTHRVTEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT +GS
Sbjct: 115 IAFLMLETLMLGVFMALDLVLFYVFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGS 174
Query: 331 LLMLISMIYLYYISNKS------FNILSWHQ--------LSITKIE--QIWLFITFFIAF 374
+LML++M+ +Y + + ++L+ HQ L IT + Q LF+ FF +F
Sbjct: 175 VLMLVAMVAMYADAGTTCIGACDVSLLT-HQFASDDFSVLGITVVGGLQTMLFLAFFASF 233
Query: 375 AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLII 434
A+K+P+WP+HTWLP+AHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S +N +
Sbjct: 234 AVKMPMWPVHTWLPEAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMANFVF 293
Query: 435 TLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALI 494
TLS+++IIY SL+A+VQ D+KKLIAYSS+AHMG+VT+GIF + + GAI QMISH I
Sbjct: 294 TLSVVAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMISHGFI 353
Query: 495 SSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
S A+F+ +G +Y++M TR I +GG++N +P +++ F++F++AN LPGTSGFIGEF+ +
Sbjct: 354 SGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFIGEFLTL 413
Query: 555 LSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
+ N + +T +I SAAY+L L + + V+G +I
Sbjct: 414 AGVFQVNTWVAAGAATGVILSAAYALWLYRRV--VMGDLI 451
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLP++ ++ PT A +++ AA ++ G + R S P+F + + ++ +F
Sbjct: 236 KMPMWPVHTWLPEAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMANFVFT 294
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 295 LSVVAIIYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMISHG 351
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F LFL G +I + H ++I GGL MP + ++ ++ VG P SGF
Sbjct: 352 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGF 406
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 59/348 (16%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I K I++S K+F+ L S ML + +Y GT
Sbjct: 135 LFYVFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFLGSVLMLVAMVAMYADAGTT 191
Query: 661 ELQSIFNVI---KLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVYQ 708
+ + + + + + SVL +++ L + K+ + P H W+P+ +
Sbjct: 192 CIGACDVSLLTHQFASDDFSVLGITVVGGLQTMLFLAFFASFAVKMPMWPVHTWLPEAHV 251
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIG 760
A T + L I+ ++ ++ LP+ ++ L++ ++I
Sbjct: 252 QAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMANFVFTLSVVAIIYT 303
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I
Sbjct: 304 SLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMISHGF-IS 354
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA + + + + + T E+D + GL R P ALI M+F + G P T GF +F
Sbjct: 355 GALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFIGEFLTL 413
Query: 881 EKIFETQ-----------------KIWLLLLIIMCSLIGAKGGRIIKD 911
+F+ +WL ++M LI + + IKD
Sbjct: 414 AGVFQVNTWVAAGAATGVILSAAYALWLYRRVVMGDLI-KESLKTIKD 460
>gi|383771524|ref|YP_005450589.1| NADP ubiquinone oxidoreductase chain M [Bradyrhizobium sp. S23321]
gi|381359647|dbj|BAL76477.1| NADP ubiquinone oxidoreductase chain M [Bradyrhizobium sp. S23321]
Length = 502
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 266/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S + ++ EYM AFLIL L
Sbjct: 68 EKANWLAT-GITYHMGVDGISLPLVILTTAIMPFCIIASWKSVTSRVREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYT +GS+LML++++
Sbjct: 127 MIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTFLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYW-NGGTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VVLAAIMLKMGGYGFLRFSLPMFPLASHDFAPLMFTLSAIAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +IFSA Y+
Sbjct: 366 LVNRMPLYALAFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVIFSACYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA M+ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGGYGFLRFSLPMFPLASHDFAPLMFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ + ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVNRMPLYALAFMVFTMANVGLPGTSGFVGE 396
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 34/265 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTFLGSVLMLLAIMALYWNGGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAIMLKMGGYGFLRFSLPMFPLAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 HDFAPLMFTLSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------M 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIF 860
G+F +I++ I+ G + L ++ T E+ + GL R P AL M+F
Sbjct: 325 QGVAGGVFQMISH--GIVS--GALFLCVGVVYDRMHTREIAAYGGLVNRMPLYALAFMVF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 381 TMANVGLPGTSGFVGEFMTLLGTFK 405
>gi|84502628|ref|ZP_01000747.1| NADH dehydrogenase subunit M [Oceanicola batsensis HTCC2597]
gi|84389023|gb|EAQ01821.1| NADH dehydrogenase subunit M [Oceanicola batsensis HTCC2597]
Length = 518
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/414 (45%), Positives = 288/414 (69%), Gaps = 23/414 (5%)
Query: 196 TCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
T +T ++ L LVG P +GF ++++ W+ + Y +G+DG+S+ F+ LT F+ +
Sbjct: 42 TVLTFIVSLFILVGFDPSDTGFQFVEERE-WL--MGLKYKMGVDGISVLFVLLTTFMMPL 98
Query: 255 IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
I S ++ ++ EYM AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG N
Sbjct: 99 TIAASWNVTSRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKN 158
Query: 315 RSYAAIKFFLYTLMGSLLMLISMIYL--------------YYISNKSFNILSWHQLSITK 360
R YA+ KFFLYT +GS+LML++M+ + + +++F++L + I
Sbjct: 159 RIYASFKFFLYTFLGSVLMLVAMVAMVADAGTTDIPALLTHEFGSETFSVLG---IQIVG 215
Query: 361 IEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLP 420
Q L++ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP
Sbjct: 216 GMQTLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLP 275
Query: 421 IFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKIS 480
+FP S + L+ +S I+I+Y SL+AMVQ D+KKLIAYSS+AHMG+VT+GIF +
Sbjct: 276 MFPIGSDLLAPLVFWMSAIAIVYTSLVAMVQEDMKKLIAYSSVAHMGYVTMGIFTANQQG 335
Query: 481 IQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCS 540
I GAI QM+SH IS A+F+ +G +Y++M TR I +GG++N +P +++ F++F++AN
Sbjct: 336 IDGAIFQMLSHGFISGALFLCVGVIYDRMHTRDIDAYGGLVNKMPAYALIFMLFTMANVG 395
Query: 541 LPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
LPGTSGFIGEF+ ++ + N + ++ ++ +I SAAY+L L + + V+G +I
Sbjct: 396 LPGTSGFIGEFLTLMGIFQVNTWVALVATSGVILSAAYALWLYRRV--VMGDLI 447
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + L+ ++F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPIGSDLLAPLVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 291 MSAIAIVYTSLVAMVQEDMKKLIAYSSVAHMGYVTMGIFTANQQGIDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H +DI GGL MP + ++ ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTRDIDAYGGLVNKMPAYALIFMLFTMANVGLPGTSGFIGE 405
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 40/313 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I KN I++S K+F+ L S ML + +
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKNRIYAS---FKFFLYTFLGSVLMLVAMVAMVADA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ + + SVL + + L + K+ + P H W+PD +
Sbjct: 189 GTTDIPALLTH-EFGSETFSVLGIQIVGGMQTLLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + L PLV W ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSDLLAPLVF-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F I G
Sbjct: 301 LVAMVQEDMKKLIAYSSVAHMGYVTMGIFTANQ--------QGIDGAIFQMLSHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T ++D + GL + P ALI M+F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TRDIDAYGGLVNKMPAYALIFMLFTMANVGLPGTSGFIGEFLTLM 410
Query: 882 KIFETQKIWLLLL 894
IF+ W+ L+
Sbjct: 411 GIFQVNT-WVALV 422
>gi|134296077|ref|YP_001119812.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia vietnamiensis G4]
gi|134139234|gb|ABO54977.1| NADH dehydrogenase subunit M [Burkholderia vietnamiensis G4]
Length = 509
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/419 (44%), Positives = 294/419 (70%), Gaps = 16/419 (3%)
Query: 177 MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFN 230
++ D R +++ I + +L GL ++V P +GF + + + W+ F+
Sbjct: 22 LRAGSDDR----VHRIRVIALVGALAGLAAVV--PLVAGFDAHSAAMQFTESRDWLAAFH 75
Query: 231 IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDG 289
+ +GIDG SLW + LTAF TL++++ S + + ++A+Y ++FLILSGL++G F A DG
Sbjct: 76 AGWRVGIDGASLWLVVLTAFTTLVVVIASWESVTVRVAQYYASFLILSGLMVGVFVAQDG 135
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFN 349
+LF+IFFEATLIP++++IGTWG R YAA+KFF + GSLL+L++M+YL S+ +F+
Sbjct: 136 LLFFIFFEATLIPLYLLIGTWGSERRVYAAVKFFFMSFAGSLLLLMAMLYLSAKSH-TFD 194
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
+ +W L + Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKL
Sbjct: 195 MNAWRTLQLGFTPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYKDGPTGAALMLA--MLKL 252
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YG LRF+LPI PDAS++F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG V
Sbjct: 253 GGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIV 312
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
TLG+F+ +I ++GAI+Q++S+ ++ AM + + L ++ K R I+ +GG+ V+P F+
Sbjct: 313 TLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSVLVDRTKQREIAAYGGVAGVMPRFAT 372
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F ++F++AN LPGTSGF+GEFM+I+ A++ NF IG + + LI SA+Y+L + K +IF
Sbjct: 373 FSMLFAMANIGLPGTSGFVGEFMVIMGAIRMNFWIGAIAALTLILSASYTLWMVKRVIF 431
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T L FL K +P+HTWL D +GPT A+ ++ M+ G
Sbjct: 198 WRTLQLGFTPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYKDGPTGAALML---AMLKLGG 254
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAF------FMGLLGIIQNDIKRIIAYSTLSQLG 138
+ R F L T + F A+ A + L+ + Q D+ +++AYST++ +G
Sbjct: 255 YGFLR----FALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMG 310
Query: 139 YMTVGL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
+T+GL GV +I L+++ F + L S++++ ++I GG+
Sbjct: 311 IVTLGLFLFNRIGVEG---AIVQLVSYGFVAGAMLLCV-SVLVDRTKQREIAAYGGVAGV 366
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK 219
MP S++ ++ +G P SGF +
Sbjct: 367 MPRFATFSMLFAMANIGLPGTSGFVGE 393
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY+ GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLSDVYKDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q + +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T + +I + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVSVLVDRTKQREIAAYGGVAGVMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A M+F + G P T GF +F +
Sbjct: 371 ATFSMLFAMANIGLPGTSGFVGEFMV 396
>gi|414173763|ref|ZP_11428390.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
broomeae ATCC 49717]
gi|410890397|gb|EKS38196.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
broomeae ATCC 49717]
Length = 503
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 267/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT + IL S + ++ EYM AFL L L
Sbjct: 69 EKTAWLAN-GIGYHMGVDGISLPFVILTTALMPFCILASWKSVTLRVREYMMAFLFLETL 127
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 128 MIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 187
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++ + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 188 LY-LNAGTTDIPTLMNTAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 246
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+I+Y SL+A++Q DIKKLIA
Sbjct: 247 VVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFTLSTIAIVYTSLVALMQEDIKKLIA 306
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QM+SH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 307 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMVSHGIVSGALFLCVGVVYDRLHTREIAAYGG 366
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGF+GEFM ++ K + + + +I SAAY+
Sbjct: 367 LVNRMPLYAFMFMVFTMANVGLPGTSGFVGEFMTLIGTFKVSIPTATIATLGVILSAAYA 426
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 427 LWLYRKVVF 435
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F L++ + ++F
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFT 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q DIK++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 283 LSTIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMVSHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ ++ ++ VG P SGF +
Sbjct: 340 IVSGALFLCVG-VVYDRLHTREIAAYGGLVNRMPLYAFMFMVFTMANVGLPGTSGFVGE 397
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 115/263 (43%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ N N+ + L
Sbjct: 166 ASFKFFLYTLLGSVLMLLAIMALYLNAGTTDIPTLMNTAVPRNLQT----WAWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPLAS 273
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ +++ ++ A+ Q + K++IAYSS+AHMG + I + +F
Sbjct: 274 HDFAPLVFTLSTIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTMQGVAGGVF 333
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ + GA + + + + + T E+ + GL R P A + M+F
Sbjct: 334 QMVSHGI---------VSGALFLCVGVVYDRLH-TREIAAYGGLVNRMPLYAFMFMVFTM 383
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 384 ANVGLPGTSGFVGEFMTLIGTFK 406
>gi|386402569|ref|ZP_10087347.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bradyrhizobium sp. WSM1253]
gi|385743195|gb|EIG63391.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bradyrhizobium sp. WSM1253]
Length = 502
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/369 (50%), Positives = 266/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S I ++ EYM AFLIL L
Sbjct: 68 EKANWLAT-GITYHMGVDGISLPLVILTTAIMPFCIIASWKAITNRVREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYW-NGGTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAIMLK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VVLAAIMLKMGGYGFLRFSLPMFPLASHDFAPLMFTLSTIAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGIVYDRMHTRDIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 366 LVNRMPLYALTFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSACYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA M+ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAIMLKMGGYGFLRFSLPMFPLASHDFAPLMFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSTIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I+ + H +DI GGL MP+ +T ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-IVYDRMHTRDIAAYGGLVNRMPLYALTFMVFTMANVGLPGTSGFVGE 396
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 34/265 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNGGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAIMLKMGGYGFLRFSLPMFPLAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 HDFAPLMFTLSTIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------M 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIF 860
G+F +I++ I+ G + L ++ DI + GL R P AL M+F
Sbjct: 325 QGVAGGVFQMISH--GIVS--GALFLCVGIVYDRMHTRDIAAYGGLVNRMPLYALTFMVF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 381 TMANVGLPGTSGFVGEFMTLLGTFK 405
>gi|414166641|ref|ZP_11422873.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
clevelandensis ATCC 49720]
gi|410892485|gb|EKS40277.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
clevelandensis ATCC 49720]
Length = 506
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/414 (46%), Positives = 283/414 (68%), Gaps = 4/414 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT + IL S + ++ EYM AFL L L
Sbjct: 72 EKTAWLAN-GIGYHMGVDGISLPFVILTTALMPFCILASWKSVTLRVREYMMAFLFLETL 130
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 131 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 190
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++ + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 191 LY-LNAGTTDIPTLMTTAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+I+Y SL+A++Q DIKKLIA
Sbjct: 250 VVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIVYTSLVALMQEDIKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T I G + QMISH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 310 YSSVAHMGFVTMGIFAGTTQGIAGGVFQMISHGIVSGALFLCVGVVYDRLHTREIAAYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGF+GEF+ ++ K + +T +I SA Y+
Sbjct: 370 LVNRMPLYAFVFLVFTMANVGLPGTSGFVGEFLTLIGTFKVSIPTAFFATTGVILSAGYA 429
Query: 580 LCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLT-LCVLIASQKNNIFSSEAA 632
L L + ++F + ++G L++ G+ L L L +L + AA
Sbjct: 430 LWLYRKVVFGVLDKPSLAGIKDLTLREGIILAPLVILTILFGVYPKPVLDMSAA 483
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F L++ + +++
Sbjct: 227 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q DIK++IAYS+++ +G++T+G+ G++ +F +++H
Sbjct: 286 LSAIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGIAG---GVFQMISHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ L+ ++ VG P SGF +
Sbjct: 343 IVSGALFLCVG-VVYDRLHTREIAAYGGLVNRMPLYAFVFLVFTMANVGLPGTSGFVGE 400
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ N+ + L
Sbjct: 169 ASFKFFLYTLLGSVLMLLAIMALYLNAGTTDIPTLMTTAVPRNLQT----WAWLAFFASF 224
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ ++ +LL L + ++ L PLV
Sbjct: 225 AVKMPMWPVHTWLPDAHVEAPTAGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 283
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ +++ ++ A+ Q + K++IAYSS+AHMG + I + T
Sbjct: 284 -WT-----LSAIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTT--------Q 329
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+F +I++ + GA + + + + + T E+ + GL R P A + ++F +
Sbjct: 330 GIAGGVFQMISHGI-VSGALFLCVGVVYDRLH-TREIAAYGGLVNRMPLYAFVFLVFTMA 387
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F F+
Sbjct: 388 NVGLPGTSGFVGEFLTLIGTFK 409
>gi|254460993|ref|ZP_05074409.1| NADH-quinone oxidoreductase chain m [Rhodobacterales bacterium
HTCC2083]
gi|206677582|gb|EDZ42069.1| NADH-quinone oxidoreductase chain m [Rhodobacteraceae bacterium
HTCC2083]
Length = 514
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/392 (46%), Positives = 274/392 (69%), Gaps = 16/392 (4%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAF 273
+GF ++ W+ + Y +G+DG+S+ F+ LT F+ ++I S D+ ++ EYM AF
Sbjct: 61 TGFQMVEEAS-WV--MGMQYKMGVDGISVLFVMLTTFMMPLVIAASWDVNTRVKEYMIAF 117
Query: 274 LILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLM 333
L+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG+NR YA+ KFFLYT +GS+LM
Sbjct: 118 LLLETLMLGVFMALDLVLFYVFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLM 177
Query: 334 LISMIYLYY---------ISNKSFNILSWHQLSITKIE--QIWLFITFFIAFAIKIPIWP 382
L++M+ ++ + SF S+ L I + Q +F+ FF +FA+K+P+WP
Sbjct: 178 LVAMVAMFVDAGTTDIPTLMTHSFGSESFSLLGIQVVGGLQTLMFLAFFASFAVKMPMWP 237
Query: 383 MHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISII 442
+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + + LI+ +S I+I+
Sbjct: 238 VHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTPLILWMSAIAIV 297
Query: 443 YISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISI 502
Y SL+A+VQ D+KKLIAYSS+AHMG+VT+GIF + I GAI QMISH IS A+F+ +
Sbjct: 298 YTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMISHGFISGALFLCV 357
Query: 503 GFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNF 562
G +Y++M TR I +GG++ +P +++ F+ F++AN LPGTSGF+GEF+ ++ + N
Sbjct: 358 GVIYDRMHTREIDAYGGLVTRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLIGVFQVNT 417
Query: 563 CIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
+ + + +I SAAY+L L + + V+G +I
Sbjct: 418 WVAAVATAGVILSAAYALWLYRRV--VMGDLI 447
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +IL+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTPLILW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +GY+T+G+ G+ +IF +++H
Sbjct: 291 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGIDG---AIFQMISHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVTRMPAYALIFMFFTMANVGLPGTSGFVGE 405
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 37/301 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L+ + L + I N I++S K+F+ L S ML + ++ GT
Sbjct: 135 LFYVFFEAGLIPMFLIIGIWGGANRIYAS---FKFFLYTFLGSVLMLVAMVAMFVDAGTT 191
Query: 661 ELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY---- 707
++ ++ F+++ + + + L L + K+ + P H W+PD +
Sbjct: 192 DIPTLMTHSFGSESFSLLGIQVVG-GLQTLMFLAFFASFAVKMPMWPVHTWLPDAHVQAP 250
Query: 708 -QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSA 764
G+ ++ +LL L + ++ + + + PL++ W ++ +++ ++ A
Sbjct: 251 TAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTPLIL-W------MSAIAIVYTSLVA 303
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFG 824
+ Q + K++IAYSS+AHMG + I + D +F +I++ F I GA
Sbjct: 304 LVQEDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGIDGAIFQMISHGF-ISGALF 354
Query: 825 VIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
+ + + + + T E+D + GL R P ALI M F + G P T GF +F +F
Sbjct: 355 LCVGVIYDRMH-TREIDAYGGLVTRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLIGVF 413
Query: 885 E 885
+
Sbjct: 414 Q 414
>gi|398822683|ref|ZP_10581060.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bradyrhizobium sp. YR681]
gi|398226633|gb|EJN12878.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Bradyrhizobium sp. YR681]
Length = 502
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/369 (49%), Positives = 266/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S I ++ EYM AFLIL L
Sbjct: 68 EKANWLAT-GITYHMGVDGISLPLVILTTAIMPFCIIASWKAITNRVREYMMAFLILETL 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 LYW-NGGTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q D+KKLIA
Sbjct: 246 VVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFTLSAIAIIYTSLVALMQEDMKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRLHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 366 LVNRMPLYALTFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAGYA 425
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 426 LWLYRKVVF 434
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 282 LSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ +T ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRLHTREIAAYGGLVNRMPLYALTFMVFTMANVGLPGTSGFVGE 396
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAIMALYWNGGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPLAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 273 HDFAPLVFTLSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------M 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+F +I++ + GA + + + + + T E+ + GL R P AL M+F
Sbjct: 325 QGVAGGVFQMISHGI-VSGALFLCVGVVYDRLH-TREIAAYGGLVNRMPLYALTFMVFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 383 ANVGLPGTSGFVGEFMTLLGTFK 405
>gi|256821527|ref|YP_003145490.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Kangiella koreensis DSM 16069]
gi|256795066|gb|ACV25722.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Kangiella koreensis DSM 16069]
Length = 505
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/373 (51%), Positives = 273/373 (73%), Gaps = 10/373 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
WI NI Y L IDG+SL I LT+ I L++++ + IKK+ ++Y +A L+++GL+ G
Sbjct: 71 WIPSLNIRYDLAIDGISLPLIVLTSLIGLLVLISATGSIKKRQSQYFAAVLMMTGLMNGV 130
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D +LFY+ +EA LIP+F++IG WGG NR YA +KFFL+T GS+ ML+++IY+
Sbjct: 131 FAAQDSILFYVLWEAMLIPMFLMIGVWGGENRIYATVKFFLFTFFGSIFMLVALIYMGRE 190
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
++ SF I QLS++ EQ W+F F AFA+KIP++P+HTWLPDAHVEAPT GSVILA
Sbjct: 191 AD-SFAISKLQQLSLSLTEQKWIFFAFLAAFAVKIPMFPVHTWLPDAHVEAPTGGSVILA 249
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
AIMLK+G YG LRFSLPI PDA ++ +I SLI+I+YI L+A+ Q D+KKL+AYSSI
Sbjct: 250 AIMLKMGGYGFLRFSLPITPDAVAEYAYWLILFSLIAIVYIGLVALAQKDMKKLVAYSSI 309
Query: 464 AHMGFVTLGIFMLT--------KISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
AHMGFVTLG F++ +++QGA+IQMISH L+S A+F SIG LY++M +R I+
Sbjct: 310 AHMGFVTLGTFIIVFLTATQAQSMALQGAMIQMISHGLVSGALFFSIGVLYDRMHSRDIA 369
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
++GG++N +P F+ ++F LAN LPGTSGF+GEF +I+++ + ++ I ++ LI +
Sbjct: 370 DYGGVVNSMPIFAALLMLFILANAGLPGTSGFVGEFFVIIASFQADWRIALVAGLTLILA 429
Query: 576 AAYSLCLSKNIIF 588
AAYSL + K +IF
Sbjct: 430 AAYSLWVYKRVIF 442
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 30/221 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFE--LSNTALSIIL 105
K FP+HTWLPD+ +E PT S +I AA M+ G + R S P+ ++ A +IL
Sbjct: 223 KIPMFPVHTWLPDAHVEAPTGGS-VILAAIMLKMGGYGFLRFSLPITPDAVAEYAYWLIL 281
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV-----------SAYTVSIF 154
F I ++GL+ + Q D+K+++AYS+++ +G++T+G + A ++
Sbjct: 282 F-SLIAIVYIGLVALAQKDMKKLVAYSSIAHMGFVTLGTFIIVFLTATQAQSMALQGAMI 340
Query: 155 HLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFS 214
+++H LF S G ++ + H++DI + GG+ MPI ++ +L+ G P S
Sbjct: 341 QMISHGLVSGALFFSIG-VLYDRMHSRDIADYGGVVNSMPIFAALLMLFILANAGLPGTS 399
Query: 215 GFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
GF ++F I D W I L A +TLI+
Sbjct: 400 GFVG--------EFFVIIASFQAD----WRIALVAGLTLIL 428
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 29/301 (9%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + +N I+ A +K+F+ S FML ++++Y G E S F +
Sbjct: 147 LIPMFLMIGVWGGENRIY---ATVKFFLFTFFGSIFML--VALIY--MGR-EADS-FAIS 197
Query: 670 KLNNINCSVLALSLLLIIVGLS--FKLGISPFHMWVPDVY----QGASIIITLLLSTTPK 723
KL ++ S+ + + K+ + P H W+PD + G S+I+ ++
Sbjct: 198 KLQQLSLSLTEQKWIFFAFLAAFAVKIPMFPVHTWLPDAHVEAPTGGSVILAAIMLKMGG 257
Query: 724 LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG 783
R + V + L++ ++ +++ + A+ Q + K+++AYSSIAHMG
Sbjct: 258 YGFL----RFSLPITPDAVAEYAYWLILFSLIAIVYIGLVALAQKDMKKLVAYSSIAHMG 313
Query: 784 ---LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDEL 840
L F I+ + + + + + +I++ + GA I + + + D
Sbjct: 314 FVTLGTFIIVFLTATQAQSM---ALQGAMIQMISHGL-VSGALFFSIGVLYDRMHSRDIA 369
Query: 841 DIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSL 900
D + G+ P A ++M+F+ + AG P T GF +FF+ F+ W + L+ +L
Sbjct: 370 D-YGGVVNSMPIFAALLMLFILANAGLPGTSGFVGEFFVIIASFQAD--WRIALVAGLTL 426
Query: 901 I 901
I
Sbjct: 427 I 427
>gi|421598871|ref|ZP_16042201.1| NADH:ubiquinone oxidoreductase subunit M [Bradyrhizobium sp.
CCGE-LA001]
gi|404269028|gb|EJZ33378.1| NADH:ubiquinone oxidoreductase subunit M [Bradyrhizobium sp.
CCGE-LA001]
Length = 449
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/369 (49%), Positives = 266/369 (72%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL + LT I I+ S + ++ EYM AFLIL L
Sbjct: 15 EKANWLAT-GITYHMGVDGISLPLVILTTAIMPFCIIASWKAVTNRVREYMMAFLILETL 73
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 74 MIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 133
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ + + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 134 LYW-NGGTTDIPTLMHTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 192
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q D+KKLIA
Sbjct: 193 VVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFTLSAIAIIYTSLVALMQEDMKKLIA 252
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T + G + QMISH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 253 YSSVAHMGFVTMGIFAGTMQGVAGGMFQMISHGIVSGALFLCVGVVYDRLHTREIAAYGG 312
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P +++ F++F++AN LPGTSGF+GEFM +L K + + +I SA Y+
Sbjct: 313 LVNRMPLYALTFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAGYA 372
Query: 580 LCLSKNIIF 588
L L + ++F
Sbjct: 373 LWLYRKVVF 381
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F L++ + ++F
Sbjct: 170 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFT 228
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ +F +++H
Sbjct: 229 LSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAG---GMFQMISHG 285
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ +T ++ ++ VG P SGF +
Sbjct: 286 IVSGALFLCVG-VVYDRLHTREIAAYGGLVNRMPLYALTFMVFTMANVGLPGTSGFVGE 343
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 30/263 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ + + S+ + L
Sbjct: 112 ASFKFFLYTLLGSVLMLLAIMALYWNGGTTDIPTLMH----TAVPRSLQTWAWLAFFASF 167
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A T + L I+ ++ ++ LP+
Sbjct: 168 AVKMPMWPVHTWLPDAHVEAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPLAS 219
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 220 HDFAPLVFTLSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------M 271
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+F +I++ + GA + + + + + T E+ + GL R P AL M+F
Sbjct: 272 QGVAGGMFQMISHGI-VSGALFLCVGVVYDRLH-TREIAAYGGLVNRMPLYALTFMVFTM 329
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 330 ANVGLPGTSGFVGEFMTLLGTFK 352
>gi|406936918|gb|EKD70530.1| hypothetical protein ACD_46C00509G0001 [uncultured bacterium]
Length = 517
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/383 (50%), Positives = 276/383 (72%), Gaps = 16/383 (4%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ +WI + ++Y LGIDG+SL I L+ F L++I+ IK ++A+YM+AFL + G+
Sbjct: 66 EDNLWIQAYQVHYALGIDGISLLMIILSNFTGLLVIIAGCHAIKNRVAQYMAAFLTMQGM 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
I+G FCA+D +LFY+F+E LIP+++ IG WG +NRSYA+IKFFL+T +GS+LML+++IY
Sbjct: 126 IVGVFCAMDAVLFYVFWEGMLIPMYLSIGMWGSANRSYASIKFFLFTFLGSILMLVALIY 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY SF I +++ L + Q WLF+ F +AFA+K+P++P+HTWLPDAH EAP GS
Sbjct: 186 LY-TQTGSFMIQNFYNLPLDINTQTWLFLAFLLAFAVKVPMFPVHTWLPDAHTEAPAGGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAA+MLKLG YG LRFS+PI P A + L+I LSLI+++YI LIA+VQ D+KKLIA
Sbjct: 245 VVLAALMLKLGIYGFLRFSMPITPLACEKLAWLMIVLSLIAVVYIGLIAIVQSDMKKLIA 304
Query: 460 YSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGFLYN 507
YSSIAHMGF TLG FM+ I S++GA+IQMI+HA S AMF+ +G L
Sbjct: 305 YSSIAHMGFATLGCFMVYDIVRHMRSLQDAYMSLEGAVIQMIAHAFGSGAMFLGVGILAE 364
Query: 508 QM--KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
+ +RLI ++GG+ N +P F+ FF++F+++N LPGT+GF+GEFM+I+SA + +F +
Sbjct: 365 RFHNHSRLIKDYGGVANTMPVFAAFFMLFAMSNVGLPGTAGFVGEFMVIMSAFQTHFWVA 424
Query: 566 VLTSTALIFSAAYSLCLSKNIIF 588
S LI SA+Y+L + K + F
Sbjct: 425 ACASLTLILSASYTLWMYKRVFF 447
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 20/212 (9%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFM 86
Y+ PL I FL + K FP+HTWLPD+ +++ AA M+ GI+
Sbjct: 199 YNLPLDINTQTWLFLAFLLAFAVKVPMFPVHTWLPDAHTEAPAGGSVVLAALMLKLGIYG 258
Query: 87 ITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
R S P+ L+ L+ +++ + I ++GL+ I+Q+D+K++IAYS+++ +G+ T+G
Sbjct: 259 FLRFSMPITPLACEKLAWLMIVLSLIAVVYIGLIAIVQSDMKKLIAYSSIAHMGFATLGC 318
Query: 145 GV------------SAYTV---SIFHLMTHAFFKALLFLSAGSIIINMKHNQD--IRNMG 187
+ AY ++ ++ HAF +FL G I+ HN I++ G
Sbjct: 319 FMVYDIVRHMRSLQDAYMSLEGAVIQMIAHAFGSGAMFLGVG-ILAERFHNHSRLIKDYG 377
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
G+ MP+ ++ +S VG P +GF +
Sbjct: 378 GVANTMPVFAAFFMLFAMSNVGLPGTAGFVGE 409
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 22/270 (8%)
Query: 629 SEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIV 688
S A+IK+F+ L S ML + LY TG+ +Q+ +N+ N + LL V
Sbjct: 162 SYASIKFFLFTFLGSILMLVALIYLYTQTGSFMIQNFYNLPLDINTQTWLFLAFLLAFAV 221
Query: 689 GLSFKLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVII-YRLLIKCLLPLVI 743
K+ + P H W+PD + G S+++ L+ KL ++ + + + I L +
Sbjct: 222 ----KVPMFPVHTWLPDAHTEAPAGGSVVLAALML---KLGIYGFLRFSMPITPLACEKL 274
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIKTSHN 797
W ++++L++ +++ + AI Q + K++IAYSSIAHMG M++ I+ S
Sbjct: 275 AW--LMIVLSLIAVVYIGLIAIVQSDMKKLIAYSSIAHMGFATLGCFMVYDIVRHMRSLQ 332
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
+ + S + + +I + F F + +L N + + + G+ P A
Sbjct: 333 D--AYMSLEGAVIQMIAHAFGSGAMFLGVGILAERFHNHSRLIKDYGGVANTMPVFAAFF 390
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
M+F S G P T GF +F + F+T
Sbjct: 391 MLFAMSNVGLPGTAGFVGEFMVIMSAFQTH 420
>gi|319787431|ref|YP_004146906.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Pseudoxanthomonas suwonensis 11-1]
gi|317465943|gb|ADV27675.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Pseudoxanthomonas suwonensis 11-1]
Length = 501
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/381 (51%), Positives = 281/381 (73%), Gaps = 14/381 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ WI ++I+Y LG DG+++ I LT +T + ++ + + I+K++ +Y++AFLIL G+
Sbjct: 63 EAHAWIPAYDIHYNLGADGIAVALILLTTIVTPLALIGAWESIQKRVNQYVAAFLILEGV 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+G F A D +LFY+FFEA LIP+F+IIG WGG R YAA+KFFLYT +GS+LML+++IY
Sbjct: 123 TVGIFAATDAILFYVFFEAMLIPMFLIIGIWGGPRRIYAAMKFFLYTFLGSVLMLVALIY 182
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY + SF + + L ++ EQ W+F F IAFA+K+P++P+HTWLPDAHVEAPT GS
Sbjct: 183 LY-LKGGSFQLADLYALPLSAKEQTWIFFAFAIAFAVKVPMFPVHTWLPDAHVEAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAAI LK+G YG LRF+LPI PDA + ++ LII LSLI++IY+ L+A+VQ D+KKL+A
Sbjct: 242 VILAAIALKIGGYGFLRFNLPITPDAGHEWAWLIIALSLIAVIYVGLVALVQDDMKKLVA 301
Query: 460 YSSIAHMGFVTLGIFM------------LTKISIQGAIIQMISHALISSAMFISIGFLYN 507
YSS+AHMGFVTLG F+ ++ +QGA++QMISH +S AMF IG LY+
Sbjct: 302 YSSVAHMGFVTLGSFIAFTLVRDYGSVDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYD 361
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
+M TR I+++GG+ NV+P F+ F ++F +AN LPGTSGF+GEFMIIL++ + + I VL
Sbjct: 362 RMHTRRIADYGGVANVMPWFATFSMLFFMANAGLPGTSGFVGEFMIILASFQKHPVIAVL 421
Query: 568 TSTALIFSAAYSLCLSKNIIF 588
+T LI +AAY+L L + + F
Sbjct: 422 AATTLITAAAYTLWLYRRVFF 442
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 95/190 (50%), Gaps = 24/190 (12%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K FP+HTWLPD+ +E PT S ++ A + G + P+ + + +I+ +
Sbjct: 219 KVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPITPDAGHEWAWLIIAL 278
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------------------LGVSAY 149
I ++GL+ ++Q+D+K+++AYS+++ +G++T+G LG+
Sbjct: 279 SLIAVIYVGLVALVQDDMKKLVAYSSVAHMGFVTLGSFIAFTLVRDYGSVDAARLGLQG- 337
Query: 150 TVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
++ +++H F +F G ++ + H + I + GG+ MP S++ ++ G
Sbjct: 338 --AMVQMISHGFVSGAMFSCIG-VLYDRMHTRRIADYGGVANVMPWFATFSMLFFMANAG 394
Query: 210 APFFSGFYSK 219
P SGF +
Sbjct: 395 LPGTSGFVGE 404
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 26/271 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA+K+F+ L S ML + LY G+ +L ++ + ++ +
Sbjct: 161 AAMKFFLYTFLGSVLMLVALIYLYLKGGSFQLADLYAL----PLSAKEQTWIFFAFAIAF 216
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ ++L + Y L + LP+ + W
Sbjct: 217 AVKVPMFPVHTWLPDAHVEAPTAGSVILAA---IALKIGGYGFL-RFNLPITPDAGHEWA 272
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM-LFSIISIKTSHNNLIIFNSC 805
+++ L++ ++I + A+ Q + K+++AYSS+AHMG + L S I+ + + S
Sbjct: 273 WLIIALSLIAVIYVGLVALVQDDMKKLVAYSSVAHMGFVTLGSFIAFTLVRD----YGSV 328
Query: 806 DS-------GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
D+ + +I++ F F I +L + T + + G+ PW A M
Sbjct: 329 DAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRM--HTRRIADYGGVANVMPWFATFSM 386
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+F + AG P T GF +F I F+ +
Sbjct: 387 LFFMANAGLPGTSGFVGEFMIILASFQKHPV 417
>gi|402849566|ref|ZP_10897796.1| NADH-ubiquinone oxidoreductase chain M [Rhodovulum sp. PH10]
gi|402500157|gb|EJW11839.1| NADH-ubiquinone oxidoreductase chain M [Rhodovulum sp. PH10]
Length = 506
Score = 371 bits (953), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/368 (48%), Positives = 266/368 (72%), Gaps = 3/368 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLT-AFITLIIILISLDIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT A + L II I++++ EYM AFL+L +
Sbjct: 68 EKHPWLAG-TISYHVGVDGISLPFVILTTALMPLCIIASWKPIQRRVKEYMVAFLVLETM 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD ++FY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 127 MVGTFSALDVVVFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAILA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y + +I I + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 187 MYGQVGTT-DIPELMARGIPQNLQYWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILAA++LK+G YG LRFSLP+FPDAS +F+ ++ LS+I+I+Y SL+A++Q D+KKLIA
Sbjct: 246 VILAAVLLKMGGYGFLRFSLPMFPDASEFFAPMVFVLSVIAIVYTSLVALMQEDVKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF + G++ QMISH ++S A+F+ +G +Y++M TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAGNTQGVAGSVFQMISHGIVSGALFLCVGVIYDRMHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ +P ++V F +F+LAN LPGTSGF+GEF+ + + N + + + +IFSA Y+
Sbjct: 366 LVTRMPVYAVIFGLFTLANIGLPGTSGFVGEFLTLFGTFRVNTWVATIAALGVIFSACYA 425
Query: 580 LCLSKNII 587
L + + ++
Sbjct: 426 LWMYRKVV 433
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 106/181 (58%), Gaps = 18/181 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F ++ + ++F+
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAAVLLKMGGYGFLRFSLPMFPDASEFFAPMVFV 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L+ ++Q D+K++IAYS+++ +G++T+G+ GV+ S+F +++H
Sbjct: 282 LSVIAIVYTSLVALMQEDVKKLIAYSSVAHMGFVTMGIFAGNTQGVAG---SVFQMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSL--VGAPFFSGFYS 218
LFL G +I + H ++I GGL MP+ + + GL +L +G P SGF
Sbjct: 339 IVSGALFLCVG-VIYDRMHTREIAAYGGLVTRMPVYAV--IFGLFTLANIGLPGTSGFVG 395
Query: 219 K 219
+
Sbjct: 396 E 396
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 22/251 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I +YG GT ++ + I ++ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAILAMYGQVGTTDIPELMA----RGIPQNLQYWAWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQ 746
+ K+ + P H W+PD + A +++L+ L + ++ LP+ + +
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAAV----LLKMGGYGFLRFSLPMFPDASEFFA 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++ +L++ +++ ++ A+ Q + K++IAYSS+AHMG + I + T +F
Sbjct: 277 PMVFVLSVIAIVYTSLVALMQEDVKKLIAYSSVAHMGFVTMGIFAGNTQGVAGSVFQMIS 336
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
G+ + GA + + + + + T E+ + GL R P A+I +F + G
Sbjct: 337 HGI---------VSGALFLCVGVIYDRMH-TREIAAYGGLVTRMPVYAVIFGLFTLANIG 386
Query: 867 FPPTIGFYAKF 877
P T GF +F
Sbjct: 387 LPGTSGFVGEF 397
>gi|429768394|ref|ZP_19300552.1| NADH dehydrogenase subunit M [Brevundimonas diminuta 470-4]
gi|429189175|gb|EKY30020.1| NADH dehydrogenase subunit M [Brevundimonas diminuta 470-4]
Length = 501
Score = 371 bits (953), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 181/357 (50%), Positives = 265/357 (74%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+S+ F+ LTAF+ I ++ S I+ ++ EYM AFLIL L+IG F +LD L
Sbjct: 86 YHLGVDGVSILFVLLTAFLLPICVVASWKSIQTRVVEYMIAFLILETLVIGVFTSLDLFL 145
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFE TL+P+++IIG WGG+NR YAA KFFLYTL+GS+LML++M+++ + + + +I
Sbjct: 146 FYIFFEGTLVPMYLIIGIWGGANRIYAAYKFFLYTLLGSVLMLLAMLWMAHTTGTT-SIP 204
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
Q + Q L++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA I+LKLG
Sbjct: 205 ELKQYAFDASVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGG 264
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG + F++P+FP AS F+ L++TLS+I+I+Y SL+A Q DIKKLIAYSS+AHMGFVT+
Sbjct: 265 YGFILFNIPMFPQASQMFTPLVLTLSVIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTM 324
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF + IQGA+ QM+SH LIS A+F+ +G +Y++M TR I+ +GG+ +P ++ F
Sbjct: 325 GIFAGNETGIQGAVFQMLSHGLISGALFLCVGVVYDRMHTREIAFYGGLTARMPWYAAIF 384
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGFIGE + + A + + ++ ++ +I SA Y+L L +N+++
Sbjct: 385 LMFTMANVGLPGTSGFIGEVLTMTGAYQVSTWTALIAASGVILSAVYALTLFRNVMY 441
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 6/172 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT S ++ + G I P+F + S ++L +
Sbjct: 230 KMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFILFNIPMFPQASQMFTPLVLTL 289
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYT---VSIFHLMTHAFFKA 164
I + L+ Q DIK++IAYS+++ +G++T+G+ T ++F +++H
Sbjct: 290 SVIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFAGNETGIQGAVFQMLSHGLISG 349
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP L+ ++ VG P SGF
Sbjct: 350 ALFLCVG-VVYDRMHTREIAFYGGLTARMPWYAAIFLMFTMANVGLPGTSGF 400
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N I+ AA K+F+ +L S ML + + TGT + +
Sbjct: 154 LVPMYLIIGIWGGANRIY---AAYKFFLYTLLGSVLMLLAMLWMAHTTGTTSIPEL---- 206
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKL 724
K + SV L L + K+ + P H W+PD + G+ I+ +LL KL
Sbjct: 207 KQYAFDASVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KL 262
Query: 725 SLF------VIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
+ + ++ + PLV L L++ +++ ++ A Q + K++IAYSS
Sbjct: 263 GGYGFILFNIPMFPQASQMFTPLV-------LTLSVIAIVYTSLVAFRQTDIKKLIAYSS 315
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD 838
+AHMG + I + + +F GL I GA + + + + + T
Sbjct: 316 VAHMGFVTMGIFAGNETGIQGAVFQMLSHGL---------ISGALFLCVGVVYDRMH-TR 365
Query: 839 ELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
E+ + GL R PW A I ++F + G P T GF
Sbjct: 366 EIAFYGGLTARMPWYAAIFLMFTMANVGLPGTSGF 400
>gi|197105255|ref|YP_002130632.1| NADH dehydrogenase subunit M [Phenylobacterium zucineum HLK1]
gi|196478675|gb|ACG78203.1| NADH dehydrogenase I, M subunit [Phenylobacterium zucineum HLK1]
Length = 494
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/360 (50%), Positives = 261/360 (72%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALD 288
++ Y +G+DG+S+ F+ LTAF+ + I S I+K++ EYM AFL+L L+IG FCALD
Sbjct: 76 SLSYRMGVDGISVLFVLLTAFLMPLCIAASWRSIEKRVPEYMIAFLVLETLVIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFYIFFE L+P+F+IIG WGG+ R YAA KFFLYTL+GS+LML +++++ + S
Sbjct: 136 LVLFYIFFEFGLVPMFLIIGIWGGARRVYAAFKFFLYTLLGSVLMLAAILFMIASTGTS- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 SIPELMAYDFAPGVQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG +RFSLP+FP+AS F+ L+ LS+I+I+Y SL+A Q DIKKLIAYSS+AHMGF
Sbjct: 255 MGGYGFMRFSLPMFPNASDLFAPLVFALSVIAIVYTSLVAFRQTDIKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF QGA+ QMISH +IS A+F+ +G +Y++M TR I+ +GG++N +P ++
Sbjct: 315 VTMGIFSGNAQGEQGALFQMISHGVISGALFLCVGVVYDRMHTREIAFYGGLVNRMPWYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++ N LPGTSGF+GE + + + + ++ +T +I SA Y+L L + +IF
Sbjct: 375 AVFMLFTMGNVGLPGTSGFVGEILTMTGVYQASTWTALVAATGVILSAMYALTLYRRVIF 434
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFMRFSLPMFPNASDLFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ Q DIK++IAYS+++ +G++T+G+ ++F +++H
Sbjct: 282 LSVIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFSGNAQGEQGALFQMISHGVIS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP ++ + VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRMHTREIAFYGGLVNRMPWYAAVFMLFTMGNVGLPGTSGFVGE 396
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 113/266 (42%), Gaps = 30/266 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML I + TGT + + + V L
Sbjct: 165 AAFKFFLYTLLGSVLMLAAILFMIASTGTSSIPELMA----YDFAPGVQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN-- 744
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+ N
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFMRFSLPMFPNAS 272
Query: 745 --WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ ++ L++ +++ ++ A Q + K++IAYSS+AHMG + I S +F
Sbjct: 273 DLFAPLVFALSVIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFSGNAQGEQGALF 332
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+ I GA + + + + + T E+ + GL R PW A + M+F
Sbjct: 333 QMISHGV---------ISGALFLCVGVVYDRMH-TREIAFYGGLVNRMPWYAAVFMLFTM 382
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQK 888
G P T GF + +++
Sbjct: 383 GNVGLPGTSGFVGEILTMTGVYQAST 408
>gi|329850716|ref|ZP_08265561.1| NADH-quinone oxidoreductase subunit M [Asticcacaulis biprosthecum
C19]
gi|328841031|gb|EGF90602.1| NADH-quinone oxidoreductase subunit M [Asticcacaulis biprosthecum
C19]
Length = 504
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 195/402 (48%), Positives = 281/402 (69%), Gaps = 17/402 (4%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
+T S++ LL GA S Y ++ W + Y +G+DG+S+ F+ LTAF+ I
Sbjct: 52 VTLALSVVMLLQFNGA---SPAYQFEEHYTWFG--PVSYHMGVDGISILFVALTAFLMPI 106
Query: 255 IILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
I S I +++ EYM AFL+L L+IG F +LD LFYIFFE L+P+F+IIG WGG
Sbjct: 107 CIAASWTSITQRVTEYMVAFLLLETLVIGVFTSLDIFLFYIFFEGGLVPMFLIIGIWGGK 166
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK--SFNILSWHQLSITKIE-----QIWL 366
+R YAA KFFLYTL+GS+LML +M+Y+ NK + NI +L +T+ Q +L
Sbjct: 167 DRVYAAYKFFLYTLLGSVLMLAAMLYMV---NKLGTANIPEMTRL-LTETPFPVDVQGFL 222
Query: 367 FITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LA I+LKLG YG +RF+LP+FP AS
Sbjct: 223 WFAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVMLAGILLKLGGYGFIRFNLPMFPQAS 282
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
F+ L++ LS+I+++Y SL+A Q DIKKLIAYSS+AHMGFVT+GIF ++ ++GAI
Sbjct: 283 EMFAPLVMILSVIAVVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFAGNQLGVEGAIF 342
Query: 487 QMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSG 546
QMISH LIS A+F+ +G +Y++ TR I+ +GG+ ++PHF+ F++F++AN LPGTSG
Sbjct: 343 QMISHGLISGALFLCVGVVYDRWHTREIAFYGGLTKLMPHFAFIFLLFTMANVGLPGTSG 402
Query: 547 FIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
FIGE + A + + +++++ +IFSA Y+L L K ++F
Sbjct: 403 FIGEIATMTGAYDWGTWVALVSASGVIFSAVYALNLYKRVMF 444
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT S ++ + G I P+F + S +++ +
Sbjct: 233 KMPMWPVHTWLPDAHVQAPTAGSVMLAGILLKLGGYGFIRFNLPMFPQASEMFAPLVMIL 292
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHAF 161
I + L+ Q DIK++IAYS+++ +G++T+G LGV +IF +++H
Sbjct: 293 SVIAVVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFAGNQLGVEG---AIFQMISHGL 349
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL K MP L+ ++ VG P SGF
Sbjct: 350 ISGALFLCVG-VVYDRWHTREIAFYGGLTKLMPHFAFIFLLFTMANVGLPGTSGF 403
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 29/272 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I K+ ++ AA K+F+ +L S ML + + GT + + ++
Sbjct: 153 LVPMFLIIGIWGGKDRVY---AAYKFFLYTLLGSVLMLAAMLYMVNKLGTANIPEMTRLL 209
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
V + K+ + P H W+PD + A +++L+ I
Sbjct: 210 TETPFPVDVQGFLWFAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVMLAG--------I 261
Query: 730 IYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ +L I+ LP+ + +++IL++ +++ ++ A Q + K++IAYSS+AH
Sbjct: 262 LLKLGGYGFIRFNLPMFPQASEMFAPLVMILSVIAVVYTSLVAFRQTDIKKLIAYSSVAH 321
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELD 841
MG + I + IF GL I GA + + + + + T E+
Sbjct: 322 MGFVTMGIFAGNQLGVEGAIFQMISHGL---------ISGALFLCVGVVYDRWH-TREIA 371
Query: 842 IFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
+ GL + P A I ++F + G P T GF
Sbjct: 372 FYGGLTKLMPHFAFIFLLFTMANVGLPGTSGF 403
>gi|92117731|ref|YP_577460.1| NADH dehydrogenase subunit M [Nitrobacter hamburgensis X14]
gi|91800625|gb|ABE63000.1| NADH dehydrogenase subunit M [Nitrobacter hamburgensis X14]
Length = 502
Score = 371 bits (952), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/360 (50%), Positives = 263/360 (73%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y +G+DG+SL + LT + + I+ S I +++ YM AFL+L L++G F ALD
Sbjct: 77 GIRYHMGVDGISLPLLILTTALMPVCIIASWRAISRRVPAYMIAFLVLETLMVGTFSALD 136
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE LIP+F+IIG WGG R YA KFFLYTL+GS+LML++++ LY+ + +
Sbjct: 137 LLLFYVFFEGVLIPMFLIIGIWGGPRRVYATFKFFLYTLLGSVLMLLAIMALYWNAGTT- 195
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + + ++ Q+W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILAAI+LK
Sbjct: 196 DIPTLMRTAVPYNLQMWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLK 255
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG LRFSLP+FP AS+ F+ LI LS I+IIY SL+A++Q D+KKLIAYSS+AHMGF
Sbjct: 256 MGGYGFLRFSLPMFPLASHDFAPLIFVLSAIAIIYTSLVALMQDDMKKLIAYSSVAHMGF 315
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF T + G + QMISH ++S A+F+ +G +Y++M TR I+ +GG++N +P ++
Sbjct: 316 VTMGIFAGTMQGVHGGVFQMISHGIVSGALFLCVGIIYDRMHTREIAAYGGLVNRMPLYA 375
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ F+ F++AN LPGTSGF+GEF+ ++ K + +T +I SAAY+L L + I+F
Sbjct: 376 LVFMTFTMANVGLPGTSGFVGEFLSLIGTFKVSIPTAFAATTGIILSAAYALWLYRKIVF 435
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I AA ++ G + R S P+F L++ + ++F+
Sbjct: 224 KMPMWPVHTWLPDAHVEAPT-AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLIFV 282
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
AI + L+ ++Q+D+K++IAYS+++ +G++T+G+ GV +F +++H
Sbjct: 283 LSAIAIIYTSLVALMQDDMKKLIAYSSVAHMGFVTMGIFAGTMQGVHG---GVFQMISHG 339
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G II + H ++I GGL MP+ + + ++ VG P SGF +
Sbjct: 340 IVSGALFLCVG-IIYDRMHTREIAAYGGLVNRMPLYALVFMTFTMANVGLPGTSGFVGE 397
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 30/255 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A K+F+ +L S ML I LY GT ++ ++ N+ + L
Sbjct: 166 ATFKFFLYTLLGSVLMLLAIMALYWNAGTTDIPTLMRTAVPYNLQM----WAWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A +++L+ I+ ++ ++ LP+
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVILAA--------ILLKMGGYGFLRFSLPMFPLAS 273
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ +L+ ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 274 HDFAPLIFVLSAIAIIYTSLVALMQDDMKKLIAYSSVAHMGFVTMGIFAGT--------M 325
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
G+F +I++ F + ++ + T E+ + GL R P AL+ M F
Sbjct: 326 QGVHGGVFQMISHGIVSGALFLCVGIIYDRM--HTREIAAYGGLVNRMPLYALVFMTFTM 383
Query: 863 SLAGFPPTIGFYAKF 877
+ G P T GF +F
Sbjct: 384 ANVGLPGTSGFVGEF 398
>gi|387902607|ref|YP_006332946.1| NADH-ubiquinone oxidoreductase subunit M [Burkholderia sp. KJ006]
gi|387577499|gb|AFJ86215.1| NADH-ubiquinone oxidoreductase chain M [Burkholderia sp. KJ006]
Length = 509
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/419 (44%), Positives = 293/419 (69%), Gaps = 16/419 (3%)
Query: 177 MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD------KKKIWIDYFN 230
++ D R +++ I + +L GL ++V P +GF + + + W+ F+
Sbjct: 22 LRAGSDDR----VHRIRVIALVGALAGLAAVV--PLVAGFDAHSAAMQFTESRDWLAAFH 75
Query: 231 IYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDG 289
+ +GIDG SLW + LTAF T ++++ S + + ++A+Y ++FLILSGL++G F A DG
Sbjct: 76 AGWRVGIDGASLWLVVLTAFTTPVVVIASWESVTVRVAQYYASFLILSGLMVGVFVAQDG 135
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFN 349
+LF+IFFEATLIP++++IGTWG R YAA+KFF + GSLL+L++M+YL S+ +F+
Sbjct: 136 LLFFIFFEATLIPLYLLIGTWGSERRVYAAVKFFFMSFAGSLLLLMAMLYLSAKSH-TFD 194
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
+ +W L + Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKL
Sbjct: 195 MNAWRTLQLGFTPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYKDGPTGAALMLA--MLKL 252
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YG LRF+LPI PDAS++F+ +I LSL +I+Y SLIA+ Q D+ KL+AYS++AHMG V
Sbjct: 253 GGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIV 312
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
TLG+F+ +I ++GAI+Q++S+ ++ AM + + L ++ K R I+ +GG+ V+P F+
Sbjct: 313 TLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSVLVDRTKQREIAAYGGVAGVMPRFAT 372
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F ++F++AN LPGTSGF+GEFM+I+ A++ NF IG + + LI SA+Y+L + K +IF
Sbjct: 373 FSMLFAMANIGLPGTSGFVGEFMVIMGAIRMNFWIGAIAALTLILSASYTLWMVKRVIF 431
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L T L FL K +P+HTWL D +GPT A+ ++ M+ G
Sbjct: 198 WRTLQLGFTPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYKDGPTGAALML---AMLKLGG 254
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAF------FMGLLGIIQNDIKRIIAYSTLSQLG 138
+ R F L T + F A+ A + L+ + Q D+ +++AYST++ +G
Sbjct: 255 YGFLR----FALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLGKLLAYSTVAHMG 310
Query: 139 YMTVGL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
+T+GL GV +I L+++ F + L S++++ ++I GG+
Sbjct: 311 IVTLGLFLFNRIGVEG---AIVQLVSYGFVAGAMLLCV-SVLVDRTKQREIAAYGGVAGV 366
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK 219
MP S++ ++ +G P SGF +
Sbjct: 367 MPRFATFSMLFAMANIGLPGTSGFVGE 393
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY+ GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLSDVYKDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q + +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLIALAQTDLGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T + +I + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCVSVLVDRTKQREIAAYGGVAGVMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A M+F + G P T GF +F +
Sbjct: 371 ATFSMLFAMANIGLPGTSGFVGEFMV 396
>gi|299135020|ref|ZP_07028211.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
sp. 1NLS2]
gi|298589997|gb|EFI50201.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
sp. 1NLS2]
Length = 502
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 195/400 (48%), Positives = 280/400 (70%), Gaps = 8/400 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
IT SL+ LL P GF +K + W+ I Y +G+DG+SL F+ LT +
Sbjct: 46 ITFAVSLVLLLHF--DPSQPGFQFVEKGQ-WLGA-AINYHMGVDGISLPFVILTTALMPF 101
Query: 255 IILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
IL S I+ ++ EYM AFL L L+IG F +LD +LFY+FFE LIP+F+IIG WGG
Sbjct: 102 CILASWKSIQNRVREYMMAFLFLETLMIGTFSSLDLVLFYLFFEGGLIPMFLIIGVWGGP 161
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIA 373
R YA+ KFFLYTL+GS+LML++++ LY + + +I + ++ Q W ++ FF +
Sbjct: 162 RRVYASFKFFLYTLLGSVLMLLAIMALYAKAGTT-DIPTLMTTNLPHNLQRWAWLAFFAS 220
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
FA+K+P+WP+HTWLPDAHVEAPT GSV+LAAI+LK+G YG LRFSLP+FP AS+ F+ L+
Sbjct: 221 FAVKMPMWPVHTWLPDAHVEAPTAGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLV 280
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHAL 493
TLS I+I+Y SL+A++Q D+KKLIAYSS+AHMGFVT+GIF T + G + QMISH +
Sbjct: 281 WTLSAIAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGI 340
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+S A+F+ +G +Y++M TR I+ +GG++N +P ++ F++F++AN LPGTSGF+GEF+
Sbjct: 341 VSGALFLCVGVIYDRMHTREIAAYGGLVNRMPLYAFTFLLFTMANVGLPGTSGFVGEFLT 400
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQM 593
+L K + + + +I SAAY+L L + I+F G+M
Sbjct: 401 LLGTFKVSVPTAIFATLGVILSAAYALWLYRKIVF--GEM 438
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 113/207 (54%), Gaps = 20/207 (9%)
Query: 28 DKPLAITANLK------AFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMV 80
D P +T NL A+L K +P+HTWLPD+ +E PT A +++ AA ++
Sbjct: 196 DIPTLMTTNLPHNLQRWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPT-AGSVVLAAILL 254
Query: 81 TAGIFMITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLG 138
G + R S P+F L++ + +++ + AI + L+ ++Q D+K++IAYS+++ +G
Sbjct: 255 KMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIVYTSLVALMQEDMKKLIAYSSVAHMG 314
Query: 139 YMTVGL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
++T+G+ GV+ +F +++H LFL G +I + H ++I GGL
Sbjct: 315 FVTMGIFAGTMQGVAG---GVFQMISHGIVSGALFLCVG-VIYDRMHTREIAAYGGLVNR 370
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK 219
MP+ T L+ ++ VG P SGF +
Sbjct: 371 MPLYAFTFLLFTMANVGLPGTSGFVGE 397
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 114/262 (43%), Gaps = 28/262 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ N+ ++ + L
Sbjct: 166 ASFKFFLYTLLGSVLMLLAIMALYAKAGTTDIPTLMT----TNLPHNLQRWAWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ ++ +LL L + ++ L PLV
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ +++ ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 281 -WT-----LSAIAIVYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFAGT--------MQ 326
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+F +I++ F + ++ + T E+ + GL R P A ++F +
Sbjct: 327 GVAGGVFQMISHGIVSGALFLCVGVIYDRM--HTREIAAYGGLVNRMPLYAFTFLLFTMA 384
Query: 864 LAGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F F+
Sbjct: 385 NVGLPGTSGFVGEFLTLLGTFK 406
>gi|85703189|ref|ZP_01034293.1| NADH dehydrogenase subunit M [Roseovarius sp. 217]
gi|85672117|gb|EAQ26974.1| NADH dehydrogenase subunit M [Roseovarius sp. 217]
Length = 525
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/392 (45%), Positives = 272/392 (69%), Gaps = 20/392 (5%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++++ W+ + Y +G+DG+S+ F+ LT FI + I S + ++ EYM
Sbjct: 68 PSNTGFQMVEERE-WL--LGLQYKMGVDGISVLFVMLTTFIMPLTIAASWTVTTRVKEYM 124
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT +GS
Sbjct: 125 IAFLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGRERIYASFKFFLYTFLGS 184
Query: 331 LLMLISMIYLY--------------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAI 376
+LML++M+ ++ +++F+IL H + Q +F+ FF +FA+
Sbjct: 185 VLMLVAMVAMFSDAGTTDIADLLKHEFESETFSILGVH---VIGGMQTLMFLAFFASFAV 241
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITL 436
K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP + + L++ +
Sbjct: 242 KMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGTEVLTPLVLWM 301
Query: 437 SLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISS 496
S I+I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF + + GAI QMISH IS
Sbjct: 302 SAIAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMISHGFISG 361
Query: 497 AMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS 556
A+F+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++
Sbjct: 362 ALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLVG 421
Query: 557 AVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+ N + + ++ +I SAAY+L L + ++F
Sbjct: 422 VFQVNTWVAAVATSGVILSAAYALWLYRRVVF 453
Score = 93.2 bits (230), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + L+ ++L+
Sbjct: 242 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGTEVLTPLVLW 300
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 301 MSAIAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMISHG 357
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 358 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 415
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I + I++S K+F+ L S ML + ++
Sbjct: 142 DLVLFYLFFEAGLIPMFLIIGIWGGRERIYAS---FKFFLYTFLGSVLMLVAMVAMFSDA 198
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ + F+++ ++ I + L L + K+ + P H W+PD +
Sbjct: 199 GTTDIADLLKHEFESETFSILGVHVIG-GMQTLMFLAFFASFAVKMPMWPVHTWLPDAHV 257
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + L PLV+ W ++ +++ +
Sbjct: 258 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGTEVLTPLVL-W------MSAIAIVYTS 310
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 311 LVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMISHGF-ISG 361
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P ALI M F + G P T GF +F
Sbjct: 362 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLV 420
Query: 882 KIFE 885
+F+
Sbjct: 421 GVFQ 424
>gi|254418138|ref|ZP_05031862.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Brevundimonas sp. BAL3]
gi|196184315|gb|EDX79291.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily
[Brevundimonas sp. BAL3]
Length = 494
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/357 (52%), Positives = 263/357 (73%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+S+ F+ LTAF+ I IL S ++ ++ EYM AFL+L L+IG F ALD L
Sbjct: 79 YHLGVDGISILFVLLTAFLMPICILASWKSVETRVVEYMIAFLVLETLVIGVFTALDLYL 138
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFE TL+P+F+IIG WGG+NR YAA KFFLYTL+GS+LML++M+++ + + + +I
Sbjct: 139 FYIFFEGTLVPMFLIIGIWGGANRIYAAYKFFLYTLLGSVLMLLAMLWMSHTAGTT-SIP 197
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
Q + Q L++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA I+LKLG
Sbjct: 198 ELKQYAFDPAVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGG 257
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG + F++P+FP AS F L+ TLS+I+I+Y SL+A Q D+KKLIAYSSIAHMGFVTL
Sbjct: 258 YGFILFNVPMFPVASEMFRPLVFTLSVIAIVYTSLVAWRQTDMKKLIAYSSIAHMGFVTL 317
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF +QGA+ QMISH LIS A+F+ +G +Y++M TR I+ +GG+ + +P F+ F
Sbjct: 318 GIFSGNYQGMQGAVFQMISHGLISGALFLCVGVVYDRMHTREIAFYGGLTSRMPWFAAIF 377
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGFIGE + + A + + ++ ++ +IFSA Y+L L + ++F
Sbjct: 378 LMFTMANVGLPGTSGFIGEVLTMTGAYQASTWAALVAASGVIFSAVYALTLYRAVMF 434
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILF-I 107
K +P+HTWLPD+ ++ PT S ++ + G I P+F +++ ++F +
Sbjct: 223 KMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFILFNVPMFPVASEMFRPLVFTL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAY---TVSIFHLMTHAFFKA 164
I + L+ Q D+K++IAYS+++ +G++T+G+ Y ++F +++H
Sbjct: 283 SVIAIVYTSLVAWRQTDMKKLIAYSSIAHMGFVTLGIFSGNYQGMQGAVFQMISHGLISG 342
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP L+ ++ VG P SGF
Sbjct: 343 ALFLCVG-VVYDRMHTREIAFYGGLTSRMPWFAAIFLMFTMANVGLPGTSGF 393
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 29/279 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L I+ L+ + L + I N I+ AA K+F+ +L S ML + + GT
Sbjct: 138 LFYIFFEGTLVPMFLIIGIWGGANRIY---AAYKFFLYTLLGSVLMLLAMLWMSHTAGTT 194
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIIT 715
+ + K + +V L L + K+ + P H W+PD + G+ I+
Sbjct: 195 SIPEL----KQYAFDPAVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVIN-WQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + I L + P+ ++ ++ L++ +++ ++ A Q + K++I
Sbjct: 251 ILL----KLGGYGFI--LFNVPMFPVASEMFRPLVFTLSVIAIVYTSLVAWRQTDMKKLI 304
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSSIAHMG + I S +F GL I GA + + + +
Sbjct: 305 AYSSIAHMGFVTLGIFSGNYQGMQGAVFQMISHGL---------ISGALFLCVGVVYDRM 355
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
+ T E+ + GL R PW A I ++F + G P T GF
Sbjct: 356 H-TREIAFYGGLTSRMPWFAAIFLMFTMANVGLPGTSGF 393
>gi|338974275|ref|ZP_08629637.1| NADH-ubiquinone oxidoreductase chain M [Bradyrhizobiaceae bacterium
SG-6C]
gi|338233002|gb|EGP08130.1| NADH-ubiquinone oxidoreductase chain M [Bradyrhizobiaceae bacterium
SG-6C]
Length = 501
Score = 370 bits (950), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 190/414 (45%), Positives = 282/414 (68%), Gaps = 4/414 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y +G+DG+SL F+ LT + IL S + ++ EYM AFL L L
Sbjct: 67 EKTAWLAN-GIGYHMGVDGISLPFVILTTALMPFCILASWKSVTLRVREYMMAFLFLETL 125
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++
Sbjct: 126 MVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAIMA 185
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY ++ + +I + ++ + Q W ++ FF +FA+K+P+WP+HTWLPDAHVEAPT GS
Sbjct: 186 LY-LNAGTTDIPTLMTTAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 244
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LAAI+LK+G YG LRFSLP+FP AS+ F+ L+ LS I+I+Y SL+A++Q DIKKLIA
Sbjct: 245 VVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWALSAIAIVYTSLVALMQEDIKKLIA 304
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF T I G + QMISH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 305 YSSVAHMGFVTMGIFAGTTQGIAGGVFQMISHGIVSGALFLCVGVVYDRLHTREIAAYGG 364
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++ F++F++AN LPGTSGF+GEF+ ++ K + +T +I SA Y+
Sbjct: 365 LVNRMPLYAFVFLVFTMANVGLPGTSGFVGEFLTLIGTFKVSIPTAFFGTTGVILSAGYA 424
Query: 580 LCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLT-LCVLIASQKNNIFSSEAA 632
L L + ++F + ++G L++ G+ L L L +L + AA
Sbjct: 425 LWLYRKVVFGVLDKPSLAGIKDLTLREGIILAPLVILTILFGVYPKPVLDMSAA 478
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A +++ AA ++ G + R S P+F L++ + +++
Sbjct: 222 KMPMWPVHTWLPDAHVEAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWA 280
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q DIK++IAYS+++ +G++T+G+ G++ +F +++H
Sbjct: 281 LSAIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGIAG---GVFQMISHG 337
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ L+ ++ VG P SGF +
Sbjct: 338 IVSGALFLCVG-VVYDRLHTREIAAYGGLVNRMPLYAFVFLVFTMANVGLPGTSGFVGE 395
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 32/264 (12%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ N+ + L
Sbjct: 164 ASFKFFLYTLLGSVLMLLAIMALYLNAGTTDIPTLMTTAVPRNLQT----WAWLAFFASF 219
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ ++ +LL L + ++ L PLV
Sbjct: 220 AVKMPMWPVHTWLPDAHVEAPTAGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 278
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ +++ ++ A+ Q + K++IAYSS+AHMG + I + T
Sbjct: 279 -WA-----LSAIAIVYTSLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTT--------Q 324
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFM 861
G+F +I++ I+ G + L ++ T E+ + GL R P A + ++F
Sbjct: 325 GIAGGVFQMISH--GIVS--GALFLCVGVVYDRLHTREIAAYGGLVNRMPLYAFVFLVFT 380
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 381 MANVGLPGTSGFVGEFLTLIGTFK 404
>gi|329889343|ref|ZP_08267686.1| NADH-quinone oxidoreductase subunit M [Brevundimonas diminuta ATCC
11568]
gi|328844644|gb|EGF94208.1| NADH-quinone oxidoreductase subunit M [Brevundimonas diminuta ATCC
11568]
Length = 501
Score = 370 bits (950), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 180/357 (50%), Positives = 265/357 (74%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+S+ F+ LTAF+ I I+ S I+ ++ EYM AFLIL ++IG F +LD L
Sbjct: 86 YHLGVDGISILFVLLTAFLLPICIVASWKSIETRVVEYMIAFLILETMVIGVFTSLDLFL 145
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFE TL+P+++IIG WGG+NR YAA KFFLYTL+GS+LML++M+++ + + + +I
Sbjct: 146 FYIFFEGTLVPMYLIIGIWGGANRIYAAYKFFLYTLLGSVLMLLAMLWMAHTTGTT-SIP 204
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
Q + Q L++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA I+LKLG
Sbjct: 205 ELKQYAFDPAVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGG 264
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG + F++P+FP AS F+ L++TLS+I+++Y SL+A Q DIKKLIAYSS+AHMGFVT+
Sbjct: 265 YGFILFNIPMFPLASQMFTPLVLTLSVIAVVYTSLVAFRQTDIKKLIAYSSVAHMGFVTM 324
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF +QGA+ QM+SH LIS A+F+ +G +Y++M TR I+ +GG+ +P ++ F
Sbjct: 325 GIFAGNDTGVQGAVFQMLSHGLISGALFLCVGVVYDRMHTREIAFYGGLTARMPWYAAIF 384
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGFIGE + + A + + ++ ++ +IFSA Y+L L +N+++
Sbjct: 385 LMFTMANVGLPGTSGFIGEVLTMTGAYQVSTWAALIAASGVIFSAVYALTLFRNVMY 441
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K +P+HTWLPD+ ++ PT S ++ + G I P+F L++ + ++L +
Sbjct: 230 KMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFILFNIPMFPLASQMFTPLVLTL 289
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ Q DIK++IAYS+++ +G++T+G+ GV ++F +++H
Sbjct: 290 SVIAVVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFAGNDTGVQG---AVFQMLSHGL 346
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP L+ ++ VG P SGF
Sbjct: 347 ISGALFLCVG-VVYDRMHTREIAFYGGLTARMPWYAAIFLMFTMANVGLPGTSGF 400
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 37/302 (12%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N I+ AA K+F+ +L S ML + + TGT + +
Sbjct: 154 LVPMYLIIGIWGGANRIY---AAYKFFLYTLLGSVLMLLAMLWMAHTTGTTSIPEL---- 206
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKL 724
K + +V L L + K+ + P H W+PD + G+ I+ +LL KL
Sbjct: 207 KQYAFDPAVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KL 262
Query: 725 SLFVIIYRLLIKCLLPLVIN-WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG 783
+ I L + PL + ++L L++ +++ ++ A Q + K++IAYSS+AHMG
Sbjct: 263 GGYGFI--LFNIPMFPLASQMFTPLVLTLSVIAVVYTSLVAFRQTDIKKLIAYSSVAHMG 320
Query: 784 LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
+ I + + +F GL I GA + + + + + T E+ +
Sbjct: 321 FVTMGIFAGNDTGVQGAVFQMLSHGL---------ISGALFLCVGVVYDRMH-TREIAFY 370
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
GL R PW A I ++F + G P T GF + ++ W +LI A
Sbjct: 371 GGLTARMPWYAAIFLMFTMANVGLPGTSGFIGEVLTMTGAYQVST-W-------AALIAA 422
Query: 904 KG 905
G
Sbjct: 423 SG 424
>gi|414162413|ref|ZP_11418660.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
felis ATCC 53690]
gi|410880193|gb|EKS28033.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia
felis ATCC 53690]
Length = 502
Score = 370 bits (949), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/376 (48%), Positives = 270/376 (71%), Gaps = 4/376 (1%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSA 272
SGF +++ W+ I Y +G+DG+SL F+ LT + IL S I+ ++ EYM A
Sbjct: 63 SGFQFEERAH-WLGA-AINYHMGVDGISLPFVILTTALMPFCILASWKSIQVRVREYMMA 120
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L L++G F +LD +LFY+FFE LIP+F+IIG WGG R YA+ KFFLYTL+GS+L
Sbjct: 121 FLVLETLMVGTFSSLDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVL 180
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++++ LY + + +I + ++ Q W ++ FF +FA+K+P+WP+HTWLPDAHV
Sbjct: 181 MLLAIMALYAQAGTT-DIPTLMTTNLPHELQRWAWLAFFASFAVKMPMWPVHTWLPDAHV 239
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSV+LAAI+LK+G YG LRFSLP+FP AS+ F+ L+ TLS I+IIY SL+A++Q
Sbjct: 240 EAPTAGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQE 299
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSS+AHMGFVT+GIF + G + QMISH ++S A+F+ +G +Y++M TR
Sbjct: 300 DMKKLIAYSSVAHMGFVTMGIFAGNVQGVAGGVFQMISHGIVSGALFLCVGVIYDRMHTR 359
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG++N +P ++ F++F++AN LPGTSGF+GEF+ ++ K + + +T +
Sbjct: 360 EIAAYGGLVNRMPLYAFTFLLFTMANVGLPGTSGFVGEFLTLIGTFKASIPTAIFATTGV 419
Query: 573 IFSAAYSLCLSKNIIF 588
I SA Y+L L + I+F
Sbjct: 420 ILSAGYALWLYRKIVF 435
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 16/205 (7%)
Query: 28 DKPLAITANLKAFLINRIGAMA-------KSAQFPLHTWLPDS-MEGPTPASALIHAATM 79
D P +T NL L R +A K +P+HTWLPD+ +E PT A +++ AA +
Sbjct: 196 DIPTLMTTNLPHEL-QRWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPT-AGSVVLAAIL 253
Query: 80 VTAGIFMITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQL 137
+ G + R S P+F L++ + +++ + AI + L+ ++Q D+K++IAYS+++ +
Sbjct: 254 LKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDMKKLIAYSSVAHM 313
Query: 138 GYMTVGL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
G++T+G+ V +F +++H LFL G +I + H ++I GGL MP
Sbjct: 314 GFVTMGIFAGNVQGVAGGVFQMISHGIVSGALFLCVG-VIYDRMHTREIAAYGGLVNRMP 372
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSK 219
+ T L+ ++ VG P SGF +
Sbjct: 373 LYAFTFLLFTMANVGLPGTSGFVGE 397
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 28/264 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML I LY GT ++ ++ N+ + + L
Sbjct: 166 ASFKFFLYTLLGSVLMLLAIMALYAQAGTTDIPTLMT----TNLPHELQRWAWLAFFASF 221
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVI 743
+ K+ + P H W+PD + G+ ++ +LL L + ++ L PLV
Sbjct: 222 AVKMPMWPVHTWLPDAHVEAPTAGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLV- 280
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
W L+ ++I ++ A+ Q + K++IAYSS+AHMG + I + N+
Sbjct: 281 -WT-----LSAIAIIYTSLVALMQEDMKKLIAYSSVAHMGFVTMGIFA-----GNV---Q 326
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
G+F +I++ F + ++ + T E+ + GL R P A ++F +
Sbjct: 327 GVAGGVFQMISHGIVSGALFLCVGVIYDRM--HTREIAAYGGLVNRMPLYAFTFLLFTMA 384
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQ 887
G P T GF +F F+
Sbjct: 385 NVGLPGTSGFVGEFLTLIGTFKAS 408
>gi|167646782|ref|YP_001684445.1| NADH dehydrogenase subunit M [Caulobacter sp. K31]
gi|167349212|gb|ABZ71947.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Caulobacter sp. K31]
Length = 494
Score = 370 bits (949), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 181/360 (50%), Positives = 257/360 (71%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALD 288
++Y +G+DG+S+ F+ LTAF+ I ++ S I K++ EYM FL+L L+IG FCALD
Sbjct: 76 GLHYRMGVDGISVLFVLLTAFLLPICVIASWKSIDKRVVEYMICFLVLETLVIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE L+P+F+IIG WGG R YAA KFFLYTL+GS+LML +++ + I+ S
Sbjct: 136 LILFYLFFEGGLVPMFLIIGIWGGKRRVYAAYKFFLYTLLGSVLMLAAILSMIAIARTS- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 SIPDLMHFKFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP+AS F L+ +S I+I+Y SL+A Q DIKKLIAYSS+AHMGF
Sbjct: 255 LGGYGFMRFSLPMFPNASELFQPLVFAMSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF QGA+ QM+SH +IS A+F+ +G +Y++M TR I+ +GG+ N +P ++
Sbjct: 315 VTMGIFSGNVQGEQGALFQMLSHGVISGALFLCVGVVYDRMHTREIAFYGGLTNRMPWYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++ N LPGTSGF+GE + ++ K + ++ ST +I SA Y+L L + ++F
Sbjct: 375 AVFMLFTMGNVGLPGTSGFVGEILTMVGTYKASTWTALVASTGVILSAVYALNLYRRVMF 434
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFMRFSLPMFPNASELFQPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ Q DIK++IAYS+++ +G++T+G+ V ++F +++H
Sbjct: 282 MSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFSGNVQGEQGALFQMLSHGVIS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP ++ + VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRMHTREIAFYGGLTNRMPWYAAVFMLFTMGNVGLPGTSGFVGE 396
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 35/287 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K ++ AA K+F+ +L S ML I + I
Sbjct: 135 DLILFYLFFEGGLVPMFLIIGIWGGKRRVY---AAYKFFLYTLLGSVLMLAAILSMIAIA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
T + + + K + L L+ + K+ + P H W+PD + A +++
Sbjct: 192 RTSSIPDLMH-FKFAPWLQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ +L ++ LP+ N +Q ++ ++ +++ ++ A Q +
Sbjct: 248 LAG--------ILLKLGGYGFMRFSLPMFPNASELFQPLVFAMSAIAIVYTSLVAFRQTD 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSS+AHMG + I S +F G+ I GA + + +
Sbjct: 300 IKKLIAYSSVAHMGFVTMGIFSGNVQGEQGALFQMLSHGV---------ISGALFLCVGV 350
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ + T E+ + GL R PW A + M+F G P T GF +
Sbjct: 351 VYDRMH-TREIAFYGGLTNRMPWYAAVFMLFTMGNVGLPGTSGFVGE 396
>gi|337287663|ref|YP_004627135.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thermodesulfobacterium sp. OPB45]
gi|334901401|gb|AEH22207.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thermodesulfobacterium geofontis OPF15]
Length = 488
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/376 (50%), Positives = 271/376 (72%), Gaps = 3/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
+GF +KK+ WI++ N YYFLG+DG+S+ FIPL+ TL+ ILIS D IK+ + E+ A
Sbjct: 61 TGFQFVEKKR-WIEFINSYYFLGVDGISILFIPLSTLTTLLCILISWDSIKELVKEFYLA 119
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
L + ++G FCALD ++FY+F+EA LIP+++IIG WGG R Y+ IKFFLYT GS+
Sbjct: 120 LLFTNIAMVGTFCALDLVIFYLFWEAILIPMYLIIGIWGGPRRIYSTIKFFLYTFFGSVF 179
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
MLI +IYLY I +F+ + + LF+ F IAFAIK+P+WP+HTWLPDAH
Sbjct: 180 MLIGIIYLY-IKFGTFDYTILVNQKYPFLVESLLFLGFAIAFAIKVPMWPVHTWLPDAHT 238
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSVILA I++KLG YG +RF+LP+FP A+ YFS L++ LS+I+IIY L+ +V+
Sbjct: 239 EAPTAGSVILAGILIKLGAYGFIRFALPMFPQAALYFSKLMLVLSVIAIIYAGLVCLVEE 298
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+K+LIAYSS++HMGFVTLGIF I+++GAI+QMI+H +++ A+F+ +G +Y++ +R
Sbjct: 299 DLKRLIAYSSVSHMGFVTLGIFSFNPIAMKGAILQMINHGIVTGALFMCVGIVYDRTHSR 358
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
IS +GG+ +P ++ FF+IF+LA+ LPGT+GFIGEF+I+L N + V + +
Sbjct: 359 AISYYGGLATSMPVYAAFFMIFTLASIGLPGTNGFIGEFLILLGTYLSNKTMVVFGALGV 418
Query: 573 IFSAAYSLCLSKNIIF 588
I AAY L L + + F
Sbjct: 419 IVGAAYMLWLYQRVFF 434
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ E PT A ++I A ++ G + R + P+F + S ++L
Sbjct: 223 KVPMWPVHTWLPDAHTEAPT-AGSVILAGILIKLGAYGFIRFALPMFPQAALYFSKLMLV 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + GL+ +++ D+KR+IAYS++S +G++T+G+ A +I ++ H
Sbjct: 282 LSVIAIIYAGLVCLVEEDLKRLIAYSSVSHMGFVTLGIFSFNPIAMKGAILQMINHGIVT 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LF+ G I+ + H++ I GGL MP+ +I L+ +G P +GF
Sbjct: 342 GALFMCVG-IVYDRTHSRAISYYGGLATSMPVYAAFFMIFTLASIGLPGTNGF 393
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 27/295 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I I+S+ IK+F+ S FML GI LY
Sbjct: 135 DLVIFYLFWEAILIPMYLIIGIWGGPRRIYST---IKFFLYTFFGSVFMLIGIIYLYIKF 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIIT 715
GT F+ L N L SLL + ++F K+ + P H W+PD + A +
Sbjct: 192 GT------FDYTILVNQKYPFLVESLLFLGFAIAFAIKVPMWPVHTWLPDAHTEAPTAGS 245
Query: 716 LLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
++L+ KL + I R + + + K++L+L++ ++I + + + + KR+I
Sbjct: 246 VILAGILIKLGAYGFI-RFALPMFPQAALYFSKLMLVLSVIAIIYAGLVCLVEEDLKRLI 304
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGA-FGVIILLKNNT 833
AYSS++HMG + I S I + G+ + GA F + ++ + T
Sbjct: 305 AYSSVSHMGFVTLGIFSFNPIAMKGAILQMINHGI---------VTGALFMCVGIVYDRT 355
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
++ + + GL P A MIF + G P T GF +F I + + K
Sbjct: 356 HSRA--ISYYGGLATSMPVYAAFFMIFTLASIGLPGTNGFIGEFLILLGTYLSNK 408
>gi|222053582|ref|YP_002535944.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Geobacter daltonii FRC-32]
gi|221562871|gb|ACM18843.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Geobacter daltonii FRC-32]
Length = 528
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/392 (47%), Positives = 281/392 (71%), Gaps = 10/392 (2%)
Query: 207 LVGAPFFSGFYSKDK-----KKIWIDY--FNIYYFLGIDGLSLWFIPLTAFITLIIILIS 259
LV P +GF + + K WI F + Y +GIDG+SLW + LT FI I IL +
Sbjct: 46 LVSIPLITGFQNTAEFQFVEKVPWISAGPFQMSYHIGIDGISLWLVILTTFIMPIAILST 105
Query: 260 LD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYA 318
+++K+ EYM L+L ++GAF A+D LFYIF+E LIP++ IIG WGG N+ YA
Sbjct: 106 WTAVEEKVKEYMICLLLLEVGMLGAFIAIDLFLFYIFWEVMLIPMYFIIGIWGGKNKIYA 165
Query: 319 AIKFFLYTLMGSLLMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLFITFFIAFAIK 377
A+KFF+YT++GSLLML+++I LY+ + FN+L ++QLS+ + Q W+F+ F +AFAIK
Sbjct: 166 AVKFFIYTMVGSLLMLVALIALYFKAGGGDFNLLKFYQLSLDPVTQTWMFLAFALAFAIK 225
Query: 378 IPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLS 437
+P++P+HTWLPDAH EAPT GSVILAA++LK+G YG +RF++P+FP A+ F+ LI TLS
Sbjct: 226 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFVRFAIPLFPLATDQFTPLIATLS 285
Query: 438 LISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSA 497
+I IIY +L+AMVQ D+KKL+AYSS+AH+GFV LG+F L + I G ++QM++H + + A
Sbjct: 286 VIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGVFALNEQGIAGGMLQMLNHGVSTGA 345
Query: 498 MFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+F+ +GF+Y + TRLI++FGG+ +P F+ F+I +L++ LPGT+GF+GEF++++ +
Sbjct: 346 LFLIVGFIYERRHTRLITDFGGLSKQMPVFATIFMIVTLSSIGLPGTNGFVGEFLVLIGS 405
Query: 558 VKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
+ + V+ ++ +I SA Y L + + ++F
Sbjct: 406 FESSIRWYSVIATSGVILSAVYMLWMFQRVMF 437
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K FPLHTWLPD+ E PT A ++I AA ++ G + R + PLF L+ + +I
Sbjct: 225 KVPMFPLHTWLPDAHTEAPT-AGSVILAAVLLKMGTYGFVRFAIPLFPLATDQFTPLIAT 283
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K+++AYS+++ LG++ +G L + ++ H
Sbjct: 284 LSVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGVFALNEQGIAGGMLQMLNHGVST 343
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I +H + I + GGL K MP+ +I LS +G P +GF +
Sbjct: 344 GALFLIVG-FIYERRHTRLITDFGGLSKQMPVFATIFMIVTLSSIGLPGTNGFVGE 398
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 153/324 (47%), Gaps = 38/324 (11%)
Query: 578 YSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKY 635
Y +CL + +LG I I +L Y+ E+M + + +I KN I+ AA+K+
Sbjct: 116 YMICLLLLEVGMLGAFIAI---DLFLFYIFWEVMLIPMYFIIGIWGGKNKIY---AAVKF 169
Query: 636 FILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--K 693
FI ++ S ML + LY G + FN++K ++ + + + + L+F K
Sbjct: 170 FIYTMVGSLLMLVALIALYFKAGGGD----FNLLKFYQLSLDPVTQTWMFLAFALAFAIK 225
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVIN-WQKILLI 751
+ + P H W+PD + A +++L+ K+ + + R I L PL + + ++
Sbjct: 226 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFV-RFAIP-LFPLATDQFTPLIAT 283
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT---SHNNLIIFNSCDS- 807
L++ +I + A+ Q + K+++AYSS+AH+G ++ + ++ + L + N S
Sbjct: 284 LSVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGVFALNEQGIAGGMLQMLNHGVST 343
Query: 808 -GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
LF I+ +I+ + +T TD F GL ++ P A I MI S G
Sbjct: 344 GALFLIVGFIYE-----------RRHTRLITD----FGGLSKQMPVFATIFMIVTLSSIG 388
Query: 867 FPPTIGFYAKFFIFEKIFETQKIW 890
P T GF +F + FE+ W
Sbjct: 389 LPGTNGFVGEFLVLIGSFESSIRW 412
>gi|221234953|ref|YP_002517389.1| NADH dehydrogenase subunit M [Caulobacter crescentus NA1000]
gi|220964125|gb|ACL95481.1| NADH-quinone oxidoreductase chain M [Caulobacter crescentus NA1000]
Length = 500
Score = 369 bits (948), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 180/360 (50%), Positives = 258/360 (71%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALD 288
++Y +G+DG+S+ F+ LTAF+ I I+ S ++K++ EY+ AFL+L L+IG FCALD
Sbjct: 82 GLHYRMGVDGISVLFVLLTAFLLPICIVASWKSVEKRVVEYLIAFLVLETLVIGVFCALD 141
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE L+P+F+IIG WGG R YAA KFFLYTL+GS+LML +++ + IS S
Sbjct: 142 IVLFYLFFEGGLVPMFLIIGIWGGKRRIYAAYKFFLYTLLGSVLMLAAILAMIGISGTS- 200
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 201 SIPELMTFKFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 260
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG +RFSLP+FP+AS F L+ LS I+I+Y SL+A Q DIKKLIAYSS+AHMGF
Sbjct: 261 MGGYGFMRFSLPMFPNASEMFQPLVFALSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGF 320
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF QGA+ QM+SH +IS A+F+ +G +Y++M TR I+ +GG+ N +P ++
Sbjct: 321 VTMGIFSGNAAGEQGALFQMLSHGIISGALFLCVGVVYDRMHTREIAFYGGLTNRMPMYA 380
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++ N LPGTSGF+GE + + K + ++++ +I SA Y+L L + ++F
Sbjct: 381 AVFMLFTMGNVGLPGTSGFVGEILTMTGVYKASTWTAIVSALGVILSAMYALTLYRRVMF 440
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ ++F
Sbjct: 229 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFMRFSLPMFPNASEMFQPLVFA 287
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ Q DIK++IAYS+++ +G++T+G+ + ++F +++H
Sbjct: 288 LSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFSGNAAGEQGALFQMLSHGIIS 347
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ ++ + VG P SGF +
Sbjct: 348 GALFLCVG-VVYDRMHTREIAFYGGLTNRMPMYAAVFMLFTMGNVGLPGTSGFVGE 402
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 33/286 (11%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I K I+ AA K+F+ +L S ML I + GI+GT + +
Sbjct: 153 LVPMFLIIGIWGGKRRIY---AAYKFFLYTLLGSVLMLAAILAMIGISGTSSIPELMT-F 208
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
K + L L+ + K+ + P H W+PD + A +++L+ I
Sbjct: 209 KFAPWLQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------I 257
Query: 730 IYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ ++ ++ LP+ N +Q ++ L+ +++ ++ A Q + K++IAYSS+AH
Sbjct: 258 LLKMGGYGFMRFSLPMFPNASEMFQPLVFALSAIAIVYTSLVAFRQTDIKKLIAYSSVAH 317
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELD 841
MG + I S + +F G+ I GA + + + + + T E+
Sbjct: 318 MGFVTMGIFSGNAAGEQGALFQMLSHGI---------ISGALFLCVGVVYDRMH-TREIA 367
Query: 842 IFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ GL R P A + M+F G P T GF + +++
Sbjct: 368 FYGGLTNRMPMYAAVFMLFTMGNVGLPGTSGFVGEILTMTGVYKAS 413
>gi|16126181|ref|NP_420745.1| NADH dehydrogenase subunit M [Caulobacter crescentus CB15]
gi|13423395|gb|AAK23913.1| NADH dehydrogenase I, M subunit [Caulobacter crescentus CB15]
Length = 494
Score = 369 bits (947), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 180/360 (50%), Positives = 258/360 (71%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALD 288
++Y +G+DG+S+ F+ LTAF+ I I+ S ++K++ EY+ AFL+L L+IG FCALD
Sbjct: 76 GLHYRMGVDGISVLFVLLTAFLLPICIVASWKSVEKRVVEYLIAFLVLETLVIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE L+P+F+IIG WGG R YAA KFFLYTL+GS+LML +++ + IS S
Sbjct: 136 IVLFYLFFEGGLVPMFLIIGIWGGKRRIYAAYKFFLYTLLGSVLMLAAILAMIGISGTS- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 SIPELMTFKFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG +RFSLP+FP+AS F L+ LS I+I+Y SL+A Q DIKKLIAYSS+AHMGF
Sbjct: 255 MGGYGFMRFSLPMFPNASEMFQPLVFALSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF QGA+ QM+SH +IS A+F+ +G +Y++M TR I+ +GG+ N +P ++
Sbjct: 315 VTMGIFSGNAAGEQGALFQMLSHGIISGALFLCVGVVYDRMHTREIAFYGGLTNRMPMYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++ N LPGTSGF+GE + + K + ++++ +I SA Y+L L + ++F
Sbjct: 375 AVFMLFTMGNVGLPGTSGFVGEILTMTGVYKASTWTAIVSALGVILSAMYALTLYRRVMF 434
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFMRFSLPMFPNASEMFQPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ Q DIK++IAYS+++ +G++T+G+ + ++F +++H
Sbjct: 282 LSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFSGNAAGEQGALFQMLSHGIIS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP+ ++ + VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRMHTREIAFYGGLTNRMPMYAAVFMLFTMGNVGLPGTSGFVGE 396
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 33/286 (11%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I K I+ AA K+F+ +L S ML I + GI+GT + +
Sbjct: 147 LVPMFLIIGIWGGKRRIY---AAYKFFLYTLLGSVLMLAAILAMIGISGTSSIPELMT-F 202
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
K + L L+ + K+ + P H W+PD + A +++L+ I
Sbjct: 203 KFAPWLQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------I 251
Query: 730 IYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH 781
+ ++ ++ LP+ N +Q ++ L+ +++ ++ A Q + K++IAYSS+AH
Sbjct: 252 LLKMGGYGFMRFSLPMFPNASEMFQPLVFALSAIAIVYTSLVAFRQTDIKKLIAYSSVAH 311
Query: 782 MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELD 841
MG + I S + +F G+ I GA + + + + + T E+
Sbjct: 312 MGFVTMGIFSGNAAGEQGALFQMLSHGI---------ISGALFLCVGVVYDRMH-TREIA 361
Query: 842 IFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ GL R P A + M+F G P T GF + +++
Sbjct: 362 FYGGLTNRMPMYAAVFMLFTMGNVGLPGTSGFVGEILTMTGVYKAS 407
>gi|383784928|ref|YP_005469498.1| NADH dehydrogenase subunit M [Leptospirillum ferrooxidans C2-3]
gi|383083841|dbj|BAM07368.1| NADH dehydrogenase, subunit M [Leptospirillum ferrooxidans C2-3]
Length = 504
Score = 369 bits (947), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 257/347 (74%), Gaps = 1/347 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ +WI + NI+Y LGIDG+SL I +T + + I S + IKK++ E+M A LIL G
Sbjct: 70 EDHLWIPFANIHYTLGIDGISLVLIIMTTLLMPMCIFTSWVGIKKRVTEFMIAILILEGA 129
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F ALD +LFY+F+EA LIP+F+IIG WGG NR YA IKFFLYTL GSL +L+++I
Sbjct: 130 MIGVFAALDFILFYVFWEAMLIPMFLIIGVWGGPNRIYATIKFFLYTLAGSLFLLLAIIS 189
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ +FNI++ + I Q + F+ F+AFA+K+P++P HTWLPDAHVEAPT GS
Sbjct: 190 LYFEGGHTFNIVALMGQHYSPIFQDFAFVALFLAFAVKVPMFPFHTWLPDAHVEAPTAGS 249
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA++MLK+G YG +RFSLP+FP AS +F+ LI LSLI II+ +L+A+ Q D+KKLIA
Sbjct: 250 VILASVMLKMGAYGFIRFSLPMFPKASMFFTGLIFALSLIGIIWGALMALAQEDMKKLIA 309
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS++HMGFVTLGIF+ ++GAI+QMI+H + + A+F+ +G LY++ +RL+S++GG
Sbjct: 310 YSSVSHMGFVTLGIFVFNVQGVEGAILQMINHGVTTGALFLCVGVLYDRTHSRLLSDYGG 369
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
I V+P FS +IFSL++ LPG + F+GEF+++L + N +GV
Sbjct: 370 IAKVMPVFSTMLVIFSLSSLGLPGLNSFVGEFLVLLGTFRANAAVGV 416
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K FP HTWLPD+ +E PT A ++I A+ M+ G + R S P+F ++ + ++F
Sbjct: 227 KVPMFPFHTWLPDAHVEAPT-AGSVILASVMLKMGAYGFIRFSLPMFPKASMFFTGLIFA 285
Query: 108 GAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ G L+ + Q D+K++IAYS++S +G++T+G+ V +I ++ H
Sbjct: 286 LSLIGIIWGALMALAQEDMKKLIAYSSVSHMGFVTLGIFVFNVQGVEGAILQMINHGVTT 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H++ + + GG+ K MP+ +I LS +G P + F +
Sbjct: 346 GALFLCVG-VLYDRTHSRLLSDYGGIAKVMPVFSTMLVIFSLSSLGLPGLNSFVGE 400
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 26/284 (9%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + N I+ A IK+F+ + S F+L I LY E FN++
Sbjct: 150 LIPMFLIIGVWGGPNRIY---ATIKFFLYTLAGSLFLLLAIISLY-----FEGGHTFNIV 201
Query: 670 KLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSL 726
L + S + + + L+F K+ + PFH W+PD + A +++L++ K+
Sbjct: 202 ALMGQHYSPIFQDFAFVALFLAFAVKVPMFPFHTWLPDAHVEAPTAGSVILASVMLKMGA 261
Query: 727 FVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLML 786
+ I R + + + ++ L++ +I G + A+ Q + K++IAYSS++HMG +
Sbjct: 262 YGFI-RFSLPMFPKASMFFTGLIFALSLIGIIWGALMALAQEDMKKLIAYSSVSHMGFVT 320
Query: 787 FSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFI 844
I +FN + + +I + F + +L + T ++ L +
Sbjct: 321 LGI----------FVFNVQGVEGAILQMINHGVTTGALFLCVGVLYDRTHSRL--LSDYG 368
Query: 845 GLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
G+ + P + +++IF S G P F +F + F
Sbjct: 369 GIAKVMPVFSTMLVIFSLSSLGLPGLNSFVGEFLVLLGTFRANA 412
>gi|84516720|ref|ZP_01004078.1| NADH dehydrogenase subunit M [Loktanella vestfoldensis SKA53]
gi|84509188|gb|EAQ05647.1| NADH dehydrogenase subunit M [Loktanella vestfoldensis SKA53]
Length = 513
Score = 368 bits (945), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 288/430 (66%), Gaps = 28/430 (6%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
WI + Y +G+DG+S+ F+ LT F+ ++I ++ ++ EYM AFLIL L++G F
Sbjct: 71 WI--MGLQYKMGVDGISILFVMLTTFLMPLVIASCWNVTTRVKEYMIAFLILETLMLGVF 128
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY--- 341
ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS+LML++M+ ++
Sbjct: 129 LALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMVSMFSQA 188
Query: 342 -----------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
+ F+IL + I Q L++ FF +FA+K+P+WP+HTWLPDA
Sbjct: 189 GTTDIPTLMGFAFGTEDFSILG---VQIVGGMQTLLWLAFFASFAVKMPMWPVHTWLPDA 245
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
HV+APT GSV+LAAI+LK+G YG LRFSLP+FP S + L++ LS I+I+Y SL+A+V
Sbjct: 246 HVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVLWLSAIAIVYTSLVALV 305
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q D+KKLIAYSS+AHMGFVT+GIF + + GAI QMISH IS A+F+ +G +Y++M
Sbjct: 306 QADMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISGALFLCVGVIYDRMH 365
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
TR I +GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++ + N + ++ ++
Sbjct: 366 TREIDAYGGLVNRMPAYALVFLFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWVALVATS 425
Query: 571 ALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLS-------IYLGLELMSLTLCVLIASQK 623
+IFSA Y+L L + + VLG +I S ++ I+ L +M+L L V A
Sbjct: 426 GVIFSAGYALWLYRRV--VLGDLIKESLRSITDMTRRERLIFAPLVVMTLLLGVYPALVL 483
Query: 624 NNIFSSEAAI 633
+ I S AA+
Sbjct: 484 DMIGPSVAAL 493
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + ++ ++L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q D+K++IAYS+++ +G++T+G+ +IF +++H F
Sbjct: 291 LSAIAIVYTSLVALVQADMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L ++ VG P SGF +
Sbjct: 351 GALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALVFLFFTMANVGLPGTSGFVGE 405
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 144/313 (46%), Gaps = 40/313 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + ++
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMVSMFSQA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ + S+L + + L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLMG-FAFGTEDFSILGVQIVGGMQTLLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + + PLV+ W L+ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVL-W------LSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F +I++ F I G
Sbjct: 301 LVALVQADMKKLIAYSSVAHMGFVTMGIFTFNQ--------QGLDGAIFQMISHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P AL+ + F + G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALVFLFFTMANVGLPGTSGFVGEFLTLV 410
Query: 882 KIFETQKIWLLLL 894
+F+ W+ L+
Sbjct: 411 GVFQVNT-WVALV 422
>gi|209964538|ref|YP_002297453.1| NADH-quinone oxidoreductase subunit M [Rhodospirillum centenum SW]
gi|209958004|gb|ACI98640.1| NADH-quinone oxidoreductase chain M [Rhodospirillum centenum SW]
Length = 516
Score = 368 bits (945), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 187/418 (44%), Positives = 287/418 (68%), Gaps = 6/418 (1%)
Query: 174 IINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG-APFFSGFYSKDKKKIWIDYFNIY 232
I+ ++ Q++ + + + IT +I L L P GF ++ + WI FNI
Sbjct: 21 ILMIRGEQELVDRNAKAVALWTSLITFVISLFILANFDPSNPGFQMMEEYR-WIPSFNIA 79
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y G+DG+S+WF+ + F+T I +L S I K++ E+M A L+L +++G F ALD +L
Sbjct: 80 YIKGVDGISIWFVLASTFLTPICVLASWTTIDKRVKEFMIALLVLETMMVGMFTALDFVL 139
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK-SFNI 350
FY+FFE L+P+F+IIG WGG R YAA KFFLYT +GS+LML++++ +Y ++ +
Sbjct: 140 FYLFFEGVLLPMFLIIGVWGGPGRIYAAYKFFLYTFIGSVLMLLAILAMYLVAGTMDMRV 199
Query: 351 LSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLG 410
+ H + T Q+WL++ FFIAFA+K PIWP+HTWLP AHVEAPT GSV+LA +MLK+G
Sbjct: 200 MVDHPFASTL--QLWLWVGFFIAFAVKTPIWPLHTWLPFAHVEAPTAGSVMLAGVMLKMG 257
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
YGL+R ++ + P+A+++F++ + LS+++IIY SL+A+ Q D+KK+IAYSS+AHMG+VT
Sbjct: 258 GYGLIRVNVQMLPEATFFFTDFVFVLSVVAIIYTSLVALAQTDMKKMIAYSSVAHMGYVT 317
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVF 530
+GIF +T+ + GAI QM+SH ++S+A+F+ IGF Y Q+ TR I +GG+ +P ++
Sbjct: 318 MGIFTMTQQGLDGAIFQMLSHTIVSAALFLCIGFAYAQLHTREIVKYGGMAQNLPRYAFV 377
Query: 531 FIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F LA+ LPGTSGF+GEF+ +L A + N + + +T L+ AAY L L + + F
Sbjct: 378 FMVFMLASVGLPGTSGFVGEFLTMLGAFQVNTWVAMFAATGLVLGAAYMLLLYRRLFF 435
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLP-DSMEGPTPASALIHAATMVTAGIFM 86
D P A T L ++ I K+ +PLHTWLP +E PT S ++ A M+ G +
Sbjct: 202 DHPFASTLQLWLWVGFFIAFAVKTPIWPLHTWLPFAHVEAPTAGSVML-AGVMLKMGGYG 260
Query: 87 ITRMSP--LFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG- 143
+ R++ L E + + + + + L+ + Q D+K++IAYS+++ +GY+T+G
Sbjct: 261 LIRVNVQMLPEATFFFTDFVFVLSVVAIIYTSLVALAQTDMKKMIAYSSVAHMGYVTMGI 320
Query: 144 --LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
+ +IF +++H A LFL G + H ++I GG+ + +P +
Sbjct: 321 FTMTQQGLDGAIFQMLSHTIVSAALFLCIGFAYAQL-HTREIVKYGGMAQNLPRYAFVFM 379
Query: 202 IGLLSLVGAPFFSGFYSK 219
+ +L+ VG P SGF +
Sbjct: 380 VFMLASVGLPGTSGFVGE 397
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 129/280 (46%), Gaps = 29/280 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLL-IIVG 689
AA K+F+ + S ML I +Y + GT++++ + +++ S L L L + +
Sbjct: 166 AAYKFFLYTFIGSVLMLLAILAMYLVAGTMDMR-----VMVDHPFASTLQLWLWVGFFIA 220
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKI 748
+ K I P H W+P + A +++L+ K+ + +I R+ ++ L +
Sbjct: 221 FAVKTPIWPLHTWLPFAHVEAPTAGSVMLAGVMLKMGGYGLI-RVNVQMLPEATFFFTDF 279
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS---- 804
+ +L++ ++I ++ A+ Q + K+MIAYSS+AHMG + I ++ + IF
Sbjct: 280 VFVLSVVAIIYTSLVALAQTDMKKMIAYSSVAHMGYVTMGIFTMTQQGLDGAIFQMLSHT 339
Query: 805 -CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ LF I + +A L T E+ + G+ Q P A + M+FM +
Sbjct: 340 IVSAALFLCIGFAYAQL---------------HTREIVKYGGMAQNLPRYAFVFMVFMLA 384
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
G P T GF +F F+ W+ + ++GA
Sbjct: 385 SVGLPGTSGFVGEFLTMLGAFQVNT-WVAMFAATGLVLGA 423
>gi|114771831|ref|ZP_01449224.1| NADH dehydrogenase subunit M [Rhodobacterales bacterium HTCC2255]
gi|114547647|gb|EAU50538.1| NADH dehydrogenase subunit M [alpha proteobacterium HTCC2255]
Length = 513
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/393 (46%), Positives = 272/393 (69%), Gaps = 15/393 (3%)
Query: 211 PFFSGFYSKDKKKIWIDYFN----IYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKL 266
P + F + +++ +N + Y +G+DG+S+ F+ LT F+ I+I + ++
Sbjct: 51 PLLTQFDPTNTSFQFVEEYNWLAGLKYKVGLDGISILFVMLTTFLMPIVIGACWTVSSRV 110
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
EYM FL+L +++ F +LD +LFY+ FEA LIP+F+I+G WGG +R YAA K FLYT
Sbjct: 111 KEYMIMFLLLETMMLAVFSSLDIILFYVVFEAGLIPMFLIVGIWGGKDRIYAAFKLFLYT 170
Query: 327 LMGSLLMLISMIYLYYISNKS-FNILSWHQLSITKIE----------QIWLFITFFIAFA 375
L+GS+LMLI++IY+++ + + L HQ S + Q LF+ FF +FA
Sbjct: 171 LLGSVLMLIAIIYMWFEAGTTDIPTLMQHQFSSENMIIFGITIIGGIQTLLFLGFFASFA 230
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S + ++T
Sbjct: 231 VKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMATFVMT 290
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS+I+IIY SL+A+VQ D+KKLIAYSS+AHMGFVT+GIF L K + GAI QM+SH IS
Sbjct: 291 LSVIAIIYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFALNKQGLDGAIFQMLSHGFIS 350
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIIL 555
+A+F+ +G +Y++M TR I +GG++ +P F++ F++F++AN LPGTSGF+GEF+ +
Sbjct: 351 AALFLGVGVIYDRMHTRDIDAYGGLVIRMPVFALIFMLFTMANVGLPGTSGFVGEFLTLT 410
Query: 556 SAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+A K N I +T +I SA Y+L L + ++F
Sbjct: 411 AAFKANTWIAFGATTGVILSAGYALWLYRRVVF 443
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 135/255 (52%), Gaps = 22/255 (8%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + S+ + ++
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMATFVMT 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ +G++T+G L +IF +++H F
Sbjct: 291 LSVIAIIYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFALNKQGLDGAIFQMLSHGFIS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK---- 219
A LFL G +I + H +DI GGL MP+ + ++ ++ VG P SGF +
Sbjct: 351 AALFLGVG-VIYDRMHTRDIDAYGGLVIRMPVFALIFMLFTMANVGLPGTSGFVGEFLTL 409
Query: 220 ---DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILI----SLDIKKKLAEYMSA 272
K WI + + G +LW F L+ + +D+++KL M+
Sbjct: 410 TAAFKANTWIAFGATTGVILSAGYALWLYRRVVFGDLVKESLKGISDMDVREKL--LMTP 467
Query: 273 FLILSGLIIGAFCAL 287
+I++ +++G + AL
Sbjct: 468 LIIMT-ILLGIYPAL 481
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 148/324 (45%), Gaps = 48/324 (14%)
Query: 586 IIFVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
I+F+L + +M+ S +++ Y+ E L+ + L V I K+ I+ AA K F+ +
Sbjct: 115 IMFLLLETMMLAVFSSLDIILFYVVFEAGLIPMFLIVGIWGGKDRIY---AAFKLFLYTL 171
Query: 641 LSSGFMLYGISILYGITGTLE----LQSIFNVIKLNNINCSVLALSLLLIIVGL----SF 692
L S ML I ++ GT + +Q F+ + +++ L+ +G +
Sbjct: 172 LGSVLMLIAIIYMWFEAGTTDIPTLMQHQFSSENMIIFGITIIGGIQTLLFLGFFASFAV 231
Query: 693 KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKI 748
K+ + P H W+PD + A T + L I+ ++ ++ LP+ +
Sbjct: 232 KMPMWPVHTWLPDAHVQAP--------TAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDV 283
Query: 749 L----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ + L++ ++I ++ A+ Q + K++IAYSS+AHMG + I ++
Sbjct: 284 MATFVMTLSVIAIIYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFALNK--------QG 335
Query: 805 CDSGLFYIITYIF---AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
D +F ++++ F A+ GVI T ++D + GL R P ALI M+F
Sbjct: 336 LDGAIFQMLSHGFISAALFLGVGVI-----YDRMHTRDIDAYGGLVIRMPVFALIFMLFT 390
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFE 885
+ G P T GF +F F+
Sbjct: 391 MANVGLPGTSGFVGEFLTLTAAFK 414
>gi|295689612|ref|YP_003593305.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Caulobacter segnis ATCC 21756]
gi|295431515|gb|ADG10687.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Caulobacter segnis ATCC 21756]
Length = 494
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 179/360 (49%), Positives = 258/360 (71%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALD 288
++Y +G+DG+S+ F+ LTAF+ I I+ S ++K++ EY+ AFL+L L+IG F ALD
Sbjct: 76 GLHYRMGVDGISVLFVLLTAFLLPICIIASWKSVEKRVVEYLIAFLVLETLVIGVFAALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE L+P+F+IIG WGG R YAA KFFLYTL+GS+LML +++ + IS S
Sbjct: 136 LVLFYLFFEFGLVPMFLIIGIWGGKRRVYAAYKFFLYTLLGSVLMLAAILAMISISGTS- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 SIPALMTFKFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG +RFSLP+FP AS F L+ +S I+I+Y SL+A Q DIKKLIAYSS+AHMGF
Sbjct: 255 MGGYGFMRFSLPMFPHASEMFQPLVFAMSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF QGA+ QM+SH +IS A+F+ +G +Y++M TR I+ +GG+ N +PH++
Sbjct: 315 VTMGIFSGNAAGEQGALFQMLSHGVISGALFLCVGVVYDRMHTREIAFYGGLTNRMPHYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++ N LPGTSGF+GE + + K + ++ +T +I SA Y+L L + +++
Sbjct: 375 FVFLLFTMGNVGLPGTSGFVGEILTMTGVYKASTWTAIVAATGVILSAMYALTLYRRVMY 434
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFMRFSLPMFPHASEMFQPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ Q DIK++IAYS+++ +G++T+G+ + ++F +++H
Sbjct: 282 MSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFSGNAAGEQGALFQMLSHGVIS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP L+ + VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRMHTREIAFYGGLTNRMPHYAFVFLLFTMGNVGLPGTSGFVGE 396
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 35/298 (11%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K ++ AA K+F+ +L S ML I + I+
Sbjct: 135 DLVLFYLFFEFGLVPMFLIIGIWGGKRRVY---AAYKFFLYTLLGSVLMLAAILAMISIS 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
GT + ++ K + L L+ + K+ + P H W+PD + A +++
Sbjct: 192 GTSSIPALMT-FKFAPWLQTWLWLAFF---ASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ ++ ++ LP+ + +Q ++ ++ +++ ++ A Q +
Sbjct: 248 LAG--------ILLKMGGYGFMRFSLPMFPHASEMFQPLVFAMSAIAIVYTSLVAFRQTD 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSS+AHMG + I S + +F G+ I GA + + +
Sbjct: 300 IKKLIAYSSVAHMGFVTMGIFSGNAAGEQGALFQMLSHGV---------ISGALFLCVGV 350
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ + T E+ + GL R P A + ++F G P T GF + +++
Sbjct: 351 VYDRMH-TREIAFYGGLTNRMPHYAFVFLLFTMGNVGLPGTSGFVGEILTMTGVYKAS 407
>gi|322421838|ref|YP_004201061.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Geobacter sp. M18]
gi|320128225|gb|ADW15785.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Geobacter sp. M18]
Length = 545
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 190/404 (47%), Positives = 282/404 (69%), Gaps = 8/404 (1%)
Query: 193 MPITCITSLIGLLSLVG--APF--FSGF-YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPL 247
M +T +T ++ L + G AP GF Y ++ I F + Y LGIDG+SLW + L
Sbjct: 37 MAVTVVTFVLSLPLITGYNAPGSDIGGFQYLENIPWIAAGPFQMSYHLGIDGISLWLVIL 96
Query: 248 TAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFII 306
T FI I IL + +++K+ EYM L+L +IG F +LD LFYIF+E LIP++ +
Sbjct: 97 TTFIMPIAILSTYTAVEEKVKEYMICLLLLEVGMIGTFISLDLFLFYIFWEIMLIPMYFM 156
Query: 307 IGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNKSFNILSWHQLSITKIEQIW 365
IG WGG NR YAA+KFF+YT +GSLLML+++I LY+ F++L ++QL + Q+W
Sbjct: 157 IGIWGGKNRIYAAVKFFIYTAVGSLLMLVALIALYFKAGGGDFSVLRFYQLHLDPATQVW 216
Query: 366 LFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDA 425
+F+ F +AFAIK+P++P+HTWLPDAH EAPT GSVILAA+MLK G YG +RF++P+FPDA
Sbjct: 217 MFLAFALAFAIKVPMFPLHTWLPDAHTEAPTAGSVILAAVMLKCGTYGYVRFAMPLFPDA 276
Query: 426 SYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAI 485
S F+ LI TLS+I IIY SL+AMVQ D+KKL+AYSS+AH+GFV LG++ L + I G +
Sbjct: 277 SAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYSSVAHLGFVMLGVYALNQQGITGGM 336
Query: 486 IQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+QM++H + + A+F+ +GF+Y + TRLIS+FGG+ +P F+ F+I + ++ LPGT+
Sbjct: 337 LQMLNHGVSTGALFLIVGFIYERRHTRLISDFGGLAKQMPVFATMFMIVTFSSIGLPGTN 396
Query: 546 GFIGEFMIILSAVKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
GF+GEF+++L + + ++ ++ +I SA Y L + + ++F
Sbjct: 397 GFVGEFLVLLGSFESELRWYAIIATSGVILSAVYMLWMFQRVMF 440
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 121/270 (44%), Gaps = 54/270 (20%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMA----------- 49
+S +LF ++ WEI+ + Y +IG W K I A +K F+ +G++
Sbjct: 135 ISLDLFLFYIFWEIMLIPMYFMIGIWGGKN-RIYAAVKFFIYTAVGSLLMLVALIALYFK 193
Query: 50 ----------------------------------KSAQFPLHTWLPDS-MEGPTPASALI 74
K FPLHTWLPD+ E PT A ++I
Sbjct: 194 AGGGDFSVLRFYQLHLDPATQVWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPT-AGSVI 252
Query: 75 HAATMVTAGIFMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
AA M+ G + R + PLF ++ + +I + I + L+ ++Q D+K+++AYS
Sbjct: 253 LAAVMLKCGTYGYVRFAMPLFPDASAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYS 312
Query: 133 TLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
+++ LG++ +G L T + ++ H LFL G I +H + I + GGL
Sbjct: 313 SVAHLGFVMLGVYALNQQGITGGMLQMLNHGVSTGALFLIVG-FIYERRHTRLISDFGGL 371
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
K MP+ +I S +G P +GF +
Sbjct: 372 AKQMPVFATMFMIVTFSSIGLPGTNGFVGE 401
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 152/334 (45%), Gaps = 58/334 (17%)
Query: 578 YSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKY 635
Y +CL + ++G I + +L Y+ E+M + + +I KN I+ AA+K+
Sbjct: 119 YMICLLLLEVGMIGTFISL---DLFLFYIFWEIMLIPMYFMIGIWGGKNRIY---AAVKF 172
Query: 636 FILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--K 693
FI + S ML + LY G + F+V++ ++ + + L+F K
Sbjct: 173 FIYTAVGSLLMLVALIALYFKAGGGD----FSVLRFYQLHLDPATQVWMFLAFALAFAIK 228
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKC--------LLPLVIN- 744
+ + P H W+PD + A +++L+ +++KC +PL +
Sbjct: 229 VPMFPLHTWLPDAHTEAPTAGSVILAA------------VMLKCGTYGYVRFAMPLFPDA 276
Query: 745 ---WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT---SHNN 798
+ ++ L++ +I ++ A+ Q + K+++AYSS+AH+G ++ + ++ +
Sbjct: 277 SAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYSSVAHLGFVMLGVYALNQQGITGGM 336
Query: 799 LIIFNSCDS--GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALI 856
L + N S LF I+ +I+ + +T +D F GL ++ P A +
Sbjct: 337 LQMLNHGVSTGALFLIVGFIYE-----------RRHTRLISD----FGGLAKQMPVFATM 381
Query: 857 MMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
MI FS G P T GF +F + FE++ W
Sbjct: 382 FMIVTFSSIGLPGTNGFVGEFLVLLGSFESELRW 415
>gi|302383062|ref|YP_003818885.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Brevundimonas subvibrioides ATCC 15264]
gi|302193690|gb|ADL01262.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Brevundimonas subvibrioides ATCC 15264]
Length = 495
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 183/357 (51%), Positives = 260/357 (72%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+S+ F+ LTAF+ I IL S I+ ++ +YM AFL+L L+IG F +LD L
Sbjct: 80 YHLGVDGISILFVLLTAFLMPICILASWKSIETRVVDYMIAFLVLETLVIGVFTSLDLFL 139
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFE TL+P+FIIIG WGG+NR YAA KFFLYTL+GS+LML++M+++ + + +I
Sbjct: 140 FYIFFEGTLVPMFIIIGVWGGANRIYAAYKFFLYTLLGSVLMLLAMLWMANEAGTT-SIP 198
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q L++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA I+LKLG
Sbjct: 199 ELKTFAFSPQAQSVLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGG 258
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG + F++P+FP+AS + L+ TLS+I+I Y SL+A Q DIKKLIAYSS+AHMGFVT+
Sbjct: 259 YGFILFNVPMFPEASIQYQPLVFTLSVIAIAYTSLVAFRQTDIKKLIAYSSVAHMGFVTM 318
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF +QGAI QM+SH LIS A+F+ +G +Y++M TR I+ +GG+ N +P ++ F
Sbjct: 319 GIFAGNAQGMQGAIFQMLSHGLISGALFLCVGVVYDRMHTREIAFYGGLTNRMPWYAAIF 378
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGFIGE + + + + + +T +I SA Y+L L +N++F
Sbjct: 379 LMFTMANVGLPGTSGFIGEMLTMTGVYQASTWAAFVAATGVILSAVYALTLYRNVMF 435
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 6/172 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWLPD+ ++ PT S ++ + G I P+F ++ ++F
Sbjct: 224 KMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFILFNVPMFPEASIQYQPLVFTL 283
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKA 164
++ A + L+ Q DIK++IAYS+++ +G++T+G+ +IF +++H
Sbjct: 284 SVIAIAYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFAGNAQGMQGAIFQMLSHGLISG 343
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H ++I GGL MP L+ ++ VG P SGF
Sbjct: 344 ALFLCVG-VVYDRMHTREIAFYGGLTNRMPWYAAIFLMFTMANVGLPGTSGF 394
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 30/266 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + + GT + +L S A S+L +
Sbjct: 166 AAYKFFLYTLLGSVLMLLAMLWMANEAGTTSIP------ELKTFAFSPQAQSVLWLAFFA 219
Query: 691 SF--KLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV- 742
SF K+ + P H W+PD + G+ I+ +LL KL + I L + P
Sbjct: 220 SFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILL----KLGGYGFI--LFNVPMFPEAS 273
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
I +Q ++ L++ ++ ++ A Q + K++IAYSS+AHMG + I + IF
Sbjct: 274 IQYQPLVFTLSVIAIAYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFAGNAQGMQGAIF 333
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL I GA + + + + + T E+ + GL R PW A I ++F
Sbjct: 334 QMLSHGL---------ISGALFLCVGVVYDRMH-TREIAFYGGLTNRMPWYAAIFLMFTM 383
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQK 888
+ G P T GF + +++
Sbjct: 384 ANVGLPGTSGFIGEMLTMTGVYQAST 409
>gi|407785291|ref|ZP_11132439.1| NADH:ubiquinone oxidoreductase subunit M [Celeribacter baekdonensis
B30]
gi|407203323|gb|EKE73310.1| NADH:ubiquinone oxidoreductase subunit M [Celeribacter baekdonensis
B30]
Length = 512
Score = 367 bits (941), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 195/411 (47%), Positives = 284/411 (69%), Gaps = 17/411 (4%)
Query: 196 TCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
T +T +I L L G + ++ WI + Y +G+DG+S+ F+ LT + +
Sbjct: 42 TVVTFVISLFVLFGFDASDTGFQMVEEHSWI--MGMKYKMGVDGISVLFVMLTTALMPLA 99
Query: 256 ILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
I + D+K ++ EYM AFL+L L++G FCALD MLFY+FFE LIP+F+IIG WGG NR
Sbjct: 100 IWSAWDVKLRVKEYMIAFLLLETLMLGVFCALDLMLFYLFFEGGLIPMFLIIGIWGGKNR 159
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW--HQLSITKIE----------Q 363
YAA KFFLYT +GS+LML++M+ +Y I + +I+ H S I+ Q
Sbjct: 160 IYAAFKFFLYTFLGSVLMLVAMVAMY-IDAGTTDIVQLLAHDFSSETIKVLGFNIVGGFQ 218
Query: 364 IWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP 423
F+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFS+P+FP
Sbjct: 219 TLAFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSIPMFP 278
Query: 424 DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQG 483
AS ++ ++ LS+I+I+Y SL+A+VQ D+KKLIAYSS+AHMG+VT GIF + + + G
Sbjct: 279 VASANLADFVMVLSVIAIVYASLVALVQEDMKKLIAYSSVAHMGYVTAGIFSMNQQGLDG 338
Query: 484 AIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
AI QMISH +S A+F+ +G +Y++M TR I FGG++N +P +++ F+ F++AN LPG
Sbjct: 339 AIFQMISHGFVSGALFLCVGVIYDRMHTREIDAFGGLVNRMPAYALVFMFFTMANVGLPG 398
Query: 544 TSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
TSGFIGEF+ ++ + N I ++ ++ +IFSAAY+L L + + VLG +I
Sbjct: 399 TSGFIGEFLTLVGMFQANTWIALVATSGVIFSAAYALWLYRRV--VLGDLI 447
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F +++ L+ ++
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSIPMFPVASANLADFVMV 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ +GY+T G + +IF +++H F
Sbjct: 291 LSVIAIVYASLVALVQEDMKKLIAYSSVAHMGYVTAGIFSMNQQGLDGAIFQMISHGFVS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I + H ++I GGL MP + + ++ VG P SGF
Sbjct: 351 GALFLCVG-VIYDRMHTREIDAFGGLVNRMPAYALVFMFFTMANVGLPGTSGF 402
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 26/306 (8%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I KN I+ AA K+F+ L S ML + +Y
Sbjct: 132 DLMLFYLFFEGGLIPMFLIIGIWGGKNRIY---AAFKFFLYTFLGSVLMLVAMVAMYIDA 188
Query: 658 GTLELQSIF------NVIKL--NNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-Q 708
GT ++ + IK+ NI L+ L + K+ + P H W+PD + Q
Sbjct: 189 GTTDIVQLLAHDFSSETIKVLGFNIVGGFQTLAFLAFFASFAVKMPMWPVHTWLPDAHVQ 248
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
+ +L + K+ + + R I N +++L++ +++ ++ A+ Q
Sbjct: 249 APTAGSVVLAAILLKMGGYGFL-RFSIPMFPVASANLADFVMVLSVIAIVYASLVALVQE 307
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
+ K++IAYSS+AHMG + I S+ D +F +I++ F F + +
Sbjct: 308 DMKKLIAYSSVAHMGYVTAGIFSMNQ--------QGLDGAIFQMISHGFVSGALFLCVGV 359
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ + T E+D F GL R P AL+ M F + G P T GF +F +F+
Sbjct: 360 IYDRM--HTREIDAFGGLVNRMPAYALVFMFFTMANVGLPGTSGFIGEFLTLVGMFQANT 417
Query: 889 IWLLLL 894
W+ L+
Sbjct: 418 -WIALV 422
>gi|39995459|ref|NP_951410.1| NADH dehydrogenase I subunit M [Geobacter sulfurreducens PCA]
gi|409910900|ref|YP_006889365.1| NADH dehydrogenase I subunit M [Geobacter sulfurreducens KN400]
gi|39982222|gb|AAR33683.1| NADH dehydrogenase I, M subunit [Geobacter sulfurreducens PCA]
gi|298504458|gb|ADI83181.1| NADH dehydrogenase I, M subunit [Geobacter sulfurreducens KN400]
Length = 522
Score = 367 bits (941), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/392 (45%), Positives = 279/392 (71%), Gaps = 10/392 (2%)
Query: 207 LVGAPFFSGFYSKD-----KKKIWIDY--FNIYYFLGIDGLSLWFIPLTAFITLIIILIS 259
+V P +GF S +K WI F + Y + IDG+SLW + LT FI I IL +
Sbjct: 45 VVSIPLVTGFQSNADFQFVEKMPWIAAGPFQMNYHVAIDGISLWLVLLTTFIMPIAILST 104
Query: 260 LD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYA 318
+++K+ EYM L+L ++GAF +LD LFYIF+E LIP++ IIG WGG N+ YA
Sbjct: 105 WTAVEEKVKEYMICLLLLEVGMLGAFVSLDLFLFYIFWEVMLIPMYFIIGIWGGKNKIYA 164
Query: 319 AIKFFLYTLMGSLLMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLFITFFIAFAIK 377
A+KFF+YT++GS+LML++++ LY+ + FN+L ++++++ Q+W+F+ F +AFAIK
Sbjct: 165 AVKFFIYTMVGSMLMLVALVTLYFKAGAGDFNVLRFYEVTLDPATQVWMFLAFALAFAIK 224
Query: 378 IPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLS 437
+P++P+HTWLPDAH EAPT GSVILAA++LK+G YG +RF++P+FPDA+ F+ LI TLS
Sbjct: 225 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFVRFAMPLFPDATDKFTPLIATLS 284
Query: 438 LISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSA 497
+I IIY +L+AMVQ D+KKL+AYSS+AH+G+V LG+F L + G ++QM++H + + A
Sbjct: 285 VIGIIYAALVAMVQEDVKKLVAYSSVAHLGYVMLGVFALNLQGLSGGMLQMLNHGVSTGA 344
Query: 498 MFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+F+ +GF+Y + TRLI++FGG+ +P F+ F+I +L++ LPGT+GF+GEF+++L A
Sbjct: 345 LFLIVGFIYERRHTRLITDFGGLAKQMPVFATIFMIVTLSSIGLPGTNGFVGEFLVLLGA 404
Query: 558 VKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
+ V+ ++ +I +A Y L + + ++F
Sbjct: 405 FESELRWYAVIGTSGVILAAVYMLWMFQRVMF 436
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 54/270 (20%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMA----------- 49
+S +LF ++ WE++ + Y +IG W K I A +K F+ +G+M
Sbjct: 131 VSLDLFLFYIFWEVMLIPMYFIIGIWGGKN-KIYAAVKFFIYTMVGSMLMLVALVTLYFK 189
Query: 50 ----------------------------------KSAQFPLHTWLPDS-MEGPTPASALI 74
K FPLHTWLPD+ E PT A ++I
Sbjct: 190 AGAGDFNVLRFYEVTLDPATQVWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPT-AGSVI 248
Query: 75 HAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
AA ++ G + R + PLF + ++ +I + I + L+ ++Q D+K+++AYS
Sbjct: 249 LAAVLLKMGTYGFVRFAMPLFPDATDKFTPLIATLSVIGIIYAALVAMVQEDVKKLVAYS 308
Query: 133 TLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
+++ LGY+ +G L + + + ++ H LFL G I +H + I + GGL
Sbjct: 309 SVAHLGYVMLGVFALNLQGLSGGMLQMLNHGVSTGALFLIVG-FIYERRHTRLITDFGGL 367
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
K MP+ +I LS +G P +GF +
Sbjct: 368 AKQMPVFATIFMIVTLSSIGLPGTNGFVGE 397
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 36/323 (11%)
Query: 578 YSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKY 635
Y +CL + +LG + + +L Y+ E+M + + +I KN I+ AA+K+
Sbjct: 115 YMICLLLLEVGMLGAFVSL---DLFLFYIFWEVMLIPMYFIIGIWGGKNKIY---AAVKF 168
Query: 636 FILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--K 693
FI ++ S ML + LY G + FNV++ + + + L+F K
Sbjct: 169 FIYTMVGSMLMLVALVTLYFKAGAGD----FNVLRFYEVTLDPATQVWMFLAFALAFAIK 224
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLIL 752
+ + P H W+PD + A +++L+ K+ + + R + + ++ L
Sbjct: 225 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFV-RFAMPLFPDATDKFTPLIATL 283
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIK---TSHNNLIIFNSCDS-- 807
++ +I + A+ Q + K+++AYSS+AH+G ++ + ++ S L + N S
Sbjct: 284 SVIGIIYAALVAMVQEDVKKLVAYSSVAHLGYVMLGVFALNLQGLSGGMLQMLNHGVSTG 343
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
LF I+ +I+ + +T TD F GL ++ P A I MI S G
Sbjct: 344 ALFLIVGFIYE-----------RRHTRLITD----FGGLAKQMPVFATIFMIVTLSSIGL 388
Query: 868 PPTIGFYAKFFIFEKIFETQKIW 890
P T GF +F + FE++ W
Sbjct: 389 PGTNGFVGEFLVLLGAFESELRW 411
>gi|384918696|ref|ZP_10018765.1| NADH dehydrogenase subunit M [Citreicella sp. 357]
gi|384467409|gb|EIE51885.1| NADH dehydrogenase subunit M [Citreicella sp. 357]
Length = 516
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 183/395 (46%), Positives = 274/395 (69%), Gaps = 22/395 (5%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAF 273
+GF ++ W+ + Y +G+DG+S+ F+ LT F+ + IL S +K ++ EYM AF
Sbjct: 61 TGFQMVEQGD-WV--MGMQYKMGVDGISVLFVMLTTFMMPLTILASWGVKSRVKEYMIAF 117
Query: 274 LILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLM 333
L+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG NR YA+ KFFLYT +GS+LM
Sbjct: 118 LLLETLMLGVFMALDMVLFYLFFEAGLIPMFLIIGIWGGKNRIYASFKFFLYTFLGSVLM 177
Query: 334 LISMIYL--------------YYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
L++M+ + + S SF++L H + Q L++ FF +FA+K+P
Sbjct: 178 LVAMVAMITDAGTTDIPTLLTHDFSFASFDVLGIH---VVGGMQTMLWLAFFASFAVKMP 234
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S + L+ +S I
Sbjct: 235 MWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEILAPLVFWMSAI 294
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+I+Y SL+A+VQ D+KKLIAYSS+AHMG+VT+GIF + + GAI QM+SH IS A+F
Sbjct: 295 AIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFTANQQGVDGAIFQMLSHGFISGALF 354
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ +G +Y++M TR I +GG++N +P +++ F+ F+++N LPGTSGF+GEF+ ++ +
Sbjct: 355 LCVGVIYDRMHTRDIDAYGGLVNRMPAYALIFLFFTMSNVGLPGTSGFVGEFLTLVGIFQ 414
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
N + + ++ +I SA+Y+L L + + VLG +I
Sbjct: 415 VNTWVALFATSGVILSASYALWLYRRV--VLGDLI 447
Score = 96.7 bits (239), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + L+ ++F
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPVGSEILAPLVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 291 MSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFTANQQGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H +DI GGL MP + L +S VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTRDIDAYGGLVNRMPAYALIFLFFTMSNVGLPGTSGFVGE 405
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 144/312 (46%), Gaps = 40/312 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+++ YL E L+ + L + I KN I++S K+F+ L S ML + +
Sbjct: 132 DMVLFYLFFEAGLIPMFLIIGIWGGKNRIYAS---FKFFLYTFLGSVLMLVAMVAMITDA 188
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ F+V+ ++ + + + L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLTHDFSFASFDVLGIHVVG-GMQTMLWLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + L PLV W ++ +++ +
Sbjct: 248 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEILAPLVF-W------MSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F I G
Sbjct: 301 LVALVQEDMKKLIAYSSVAHMGYVTMGIFTANQ--------QGVDGAIFQMLSHGF-ISG 351
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T ++D + GL R P ALI + F S G P T GF +F
Sbjct: 352 ALFLCVGVIYDRMH-TRDIDAYGGLVNRMPAYALIFLFFTMSNVGLPGTSGFVGEFLTLV 410
Query: 882 KIFETQKIWLLL 893
IF+ W+ L
Sbjct: 411 GIFQVNT-WVAL 421
>gi|163850505|ref|YP_001638548.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium extorquens PA1]
gi|163662110|gb|ABY29477.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium extorquens PA1]
Length = 527
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 278/423 (65%), Gaps = 5/423 (1%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
L+ + I+ + + + T +T L+ L + S + + W+
Sbjct: 15 LAGAAFILTLGEETAAVKRNARWAALITTVVTFLLSLAAWARYDIASPSFQLVESHAWLA 74
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
I + LG+DG S+ I LT F+ I S L ++ ++ EY AFL+L +IG FCA
Sbjct: 75 E-TIRFKLGVDGFSMPLILLTTFLMPFCIGASWLSVENRVKEYFVAFLVLETTMIGVFCA 133
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 134 LDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAIMAMYWEAGT 193
Query: 347 S-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAI 405
+ L H+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I
Sbjct: 194 TDIPTLLAHRFPVHM--QTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251
Query: 406 MLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAH 465
+LK+G YG +R SLP+ PDAS F+ L+ LS+I+II+ SL AM+Q DIKKLIAYSS+AH
Sbjct: 252 LLKMGGYGFIRISLPMLPDASAQFAPLVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAH 311
Query: 466 MGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIP 525
MGFVTLG+F L + IQGA+ MISH ++S A+F+ +G +Y++M TR I+ +GG++ +P
Sbjct: 312 MGFVTLGLFTLNEQGIQGALFLMISHGIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMP 371
Query: 526 HFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKN 585
++ ++F++AN LPGTSGF+GEF+ ++ A K N + + +I SA Y+L L
Sbjct: 372 LYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFKANPTVAFFSVFGIILSAGYALWLYAR 431
Query: 586 IIF 588
+I+
Sbjct: 432 VIY 434
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 112/210 (53%), Gaps = 21/210 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R+S P+ ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRISLPMLPDASAQFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I F L ++Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSVIAIIFTSLTAMMQTDIKKLIAYSSVAHMGFVTLGLFTLNEQGIQG---ALFLMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK- 219
LFL G ++ + H ++I GGL K MP+ ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVKRMPLYAAAMMVFTMANVGLPGTSGFVGEF 397
Query: 220 ------DKKKIWIDYFNIYYFLGIDGLSLW 243
K + +F+++ + G +LW
Sbjct: 398 LAMMGAFKANPTVAFFSVFGIILSAGYALW 427
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 135/296 (45%), Gaps = 29/296 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ +L S ML I +Y
Sbjct: 135 DLVLFYLFFEAGLIPMFLIIGIWGGKRRIYAS---FKFFLYTLLGSVLMLLAIMAMYWEA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
GT ++ ++ + + L + K+ + P H W+PD + G+ I
Sbjct: 192 GTTDIPTLLA----HRFPVHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+ +LL K+ + I R+ + L + ++ L++ ++I +++A+ Q + K+
Sbjct: 248 LAGILL----KMGGYGFI-RISLPMLPDASAQFAPLVFALSVIAIIFTSLTAMMQTDIKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHMG + + ++ LF +I++ + GA + + + +
Sbjct: 303 LIAYSSVAHMGFVTLGLFTLNE--------QGIQGALFLMISHGI-VSGALFLCVGVVYD 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ T E+ + GL +R P A MM+F + G P T GF +F F+
Sbjct: 354 RMH-TREIAAYGGLVKRMPLYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFKANP 408
>gi|357384375|ref|YP_004899099.1| NADH-ubiquinone oxidoreductase subunit M [Pelagibacterium
halotolerans B2]
gi|351593012|gb|AEQ51349.1| NADH-ubiquinone oxidoreductase chain M [Pelagibacterium
halotolerans B2]
Length = 519
Score = 366 bits (940), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 181/357 (50%), Positives = 256/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +G+DG+S+ FI LT + + IL S + I ++ EYM FL+L L+IG F LD +
Sbjct: 80 YRMGVDGISVLFIVLTGLLMPMCILASWESISFRIREYMVLFLVLEMLMIGVFATLDLAM 139
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+FFE TL+P+F+IIG WGG R A+ KFF YT +GS+LML++++ +Y+ + + +I
Sbjct: 140 FYVFFEGTLVPMFLIIGIWGGKRRIQASYKFFFYTFIGSVLMLLAIMAMYWQAG-TLDIA 198
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q WL++ FF + A+K+P+WP H WLP+AHVEAPT GSVILAAI+LKLG
Sbjct: 199 RLLDYDFPENMQYWLWLAFFASLAVKMPMWPFHRWLPEAHVEAPTAGSVILAAILLKLGG 258
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG LRFSLP+FPDAS YFSN + LS+ +II SL+A+VQ DIKKLIAYSS+AHMGFVT+
Sbjct: 259 YGFLRFSLPMFPDASLYFSNFVFFLSVAAIIITSLVALVQTDIKKLIAYSSVAHMGFVTM 318
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
GIF +QGAI QMISH ++S A+F+S+G +Y++M TR I+ +GG++ +P ++ F
Sbjct: 319 GIFAGNVYGVQGAIFQMISHGIVSGALFLSVGVIYDRMHTRDINAYGGLVERMPRYAFAF 378
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++AN LPGTSGF+GEF+ +L+ + N V +T +I SA Y+L L + II+
Sbjct: 379 MVFTMANVGLPGTSGFVGEFLTLLAIFQVNTWFAVFATTGVILSACYALWLYRKIIW 435
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P H WLP++ +E PT A ++I AA ++ G + R S P+F ++ S +F
Sbjct: 224 KMPMWPFHRWLPEAHVEAPT-AGSVILAAILLKLGGYGFLRFSLPMFPDASLYFSNFVFF 282
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q DIK++IAYS+++ +G++T+G+ V +IF +++H
Sbjct: 283 LSVAAIIITSLVALVQTDIKKLIAYSSVAHMGFVTMGIFAGNVYGVQGAIFQMISHGIVS 342
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFLS G +I + H +DI GGL + MP ++ ++ VG P SGF +
Sbjct: 343 GALFLSVG-VIYDRMHTRDINAYGGLVERMPRYAFAFMVFTMANVGLPGTSGFVGE 397
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 175/411 (42%), Gaps = 75/411 (18%)
Query: 586 IIFVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGI 640
++F++ +M+MI + +L Y+ E L+ + L + I K I +A+ K+F
Sbjct: 119 VLFLVLEMLMIGVFATLDLAMFYVFFEGTLVPMFLIIGIWGGKRRI---QASYKFFFYTF 175
Query: 641 LSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
+ S ML I +Y GTL++ + + N+ + L L+ K+ + PFH
Sbjct: 176 IGSVLMLLAIMAMYWQAGTLDIARLLDYDFPENMQYWLW----LAFFASLAVKMPMWPFH 231
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLIL 752
W+P+ + A T + L I+ +L ++ LP+ + + + L
Sbjct: 232 RWLPEAHVEAP--------TAGSVILAAILLKLGGYGFLRFSLPMFPDASLYFSNFVFFL 283
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
++ ++II ++ A+ Q + K++IAYSS+AHMG + I + IF G+
Sbjct: 284 SVAAIIITSLVALVQTDIKKLIAYSSVAHMGFVTMGIFAGNVYGVQGAIFQMISHGI--- 340
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ GA + + + + + T +++ + GL +R P A M+F + G P T G
Sbjct: 341 ------VSGALFLSVGVIYDRMH-TRDINAYGGLVERMPRYAFAFMVFTMANVGLPGTSG 393
Query: 873 FYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGVGSPGIYIVEAIKAARKS 932
F +F IF+ W + A G I+ C A+ RK
Sbjct: 394 FVGEFLTLLAIFQVNT-WFAVF--------ATTGVILSAC-----------YALWLYRK- 432
Query: 933 ALIINRGSLELENLRFEEKKYENFVFNINKAS-----EKIITKILFNTYPS 978
I G+LE E+L+ + ++N II ILF YP+
Sbjct: 433 ---IIWGALEKESLK--------SILDLNAREMVTIVPLIILTILFGFYPA 472
>gi|218529202|ref|YP_002420018.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium extorquens CM4]
gi|240137570|ref|YP_002962041.1| NADH-quinone oxidoreductase subunit M [Methylobacterium extorquens
AM1]
gi|254560041|ref|YP_003067136.1| NADH-quinone oxidoreductase subunit M [Methylobacterium extorquens
DM4]
gi|418058644|ref|ZP_12696613.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium extorquens DSM 13060]
gi|218521505|gb|ACK82090.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium extorquens CM4]
gi|240007538|gb|ACS38764.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
[Methylobacterium extorquens AM1]
gi|254267319|emb|CAX23151.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
[Methylobacterium extorquens DM4]
gi|373567789|gb|EHP93749.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium extorquens DSM 13060]
Length = 527
Score = 366 bits (940), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 278/423 (65%), Gaps = 5/423 (1%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
L+ + I+ + + + T +T L+ L + S + + W+
Sbjct: 15 LAGAAFILTLGEETAAVKRNARWAALITTIVTFLLSLAAWARYDIASPSFQLVESHAWLA 74
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
I + LG+DG S+ I LT F+ I S L ++ ++ EY AFL+L +IG FCA
Sbjct: 75 E-TIRFKLGVDGFSMPLILLTTFLMPFCIGASWLSVENRVKEYFVAFLVLETTMIGVFCA 133
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 134 LDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAIMAMYWEAGT 193
Query: 347 S-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAI 405
+ L H+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I
Sbjct: 194 TDIPTLLAHRFPVHM--QTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251
Query: 406 MLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAH 465
+LK+G YG +R SLP+ PDAS F+ L+ LS+I+II+ SL AM+Q DIKKLIAYSS+AH
Sbjct: 252 LLKMGGYGFIRISLPMLPDASAQFAPLVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAH 311
Query: 466 MGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIP 525
MGFVTLG+F L + IQGA+ MISH ++S A+F+ +G +Y++M TR I+ +GG++ +P
Sbjct: 312 MGFVTLGLFTLNEQGIQGALFLMISHGIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMP 371
Query: 526 HFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKN 585
++ ++F++AN LPGTSGF+GEF+ ++ A K N + + +I SA Y+L L
Sbjct: 372 LYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFKANPTVAFFSVFGIILSAGYALWLYAR 431
Query: 586 IIF 588
+I+
Sbjct: 432 VIY 434
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 112/210 (53%), Gaps = 21/210 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R+S P+ ++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRISLPMLPDASAQFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I F L ++Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSVIAIIFTSLTAMMQTDIKKLIAYSSVAHMGFVTLGLFTLNEQGIQG---ALFLMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK- 219
LFL G ++ + H ++I GGL K MP+ ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVKRMPLYAAAMMVFTMANVGLPGTSGFVGEF 397
Query: 220 ------DKKKIWIDYFNIYYFLGIDGLSLW 243
K + +F+++ + G +LW
Sbjct: 398 LAMMGAFKANPTVAFFSVFGIILSAGYALW 427
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 135/296 (45%), Gaps = 29/296 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ +L S ML I +Y
Sbjct: 135 DLVLFYLFFEAGLIPMFLIIGIWGGKRRIYAS---FKFFLYTLLGSVLMLLAIMAMYWEA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
GT ++ ++ + + L + K+ + P H W+PD + G+ I
Sbjct: 192 GTTDIPTLLA----HRFPVHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+ +LL K+ + I R+ + L + ++ L++ ++I +++A+ Q + K+
Sbjct: 248 LAGILL----KMGGYGFI-RISLPMLPDASAQFAPLVFALSVIAIIFTSLTAMMQTDIKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHMG + + ++ LF +I++ + GA + + + +
Sbjct: 303 LIAYSSVAHMGFVTLGLFTLNE--------QGIQGALFLMISHGI-VSGALFLCVGVVYD 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ T E+ + GL +R P A MM+F + G P T GF +F F+
Sbjct: 354 RMH-TREIAAYGGLVKRMPLYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFKANP 408
>gi|406941963|gb|EKD74318.1| hypothetical protein ACD_45C00004G0008 [uncultured bacterium]
Length = 507
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 197/386 (51%), Positives = 279/386 (72%), Gaps = 20/386 (5%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSG 278
+ +WI + I+Y +GIDG+SL I LT F L++IL IK ++A+YM+ FLI+ G
Sbjct: 65 QENYLWIRAYQIHYAVGIDGISLAMIILTNFTGLLVILAGCHAIKIRVAQYMATFLIMQG 124
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
+IIG F A D +LFY+F+E LIP+++ IG WG +NRSYA+IKFFLYT +GS+LML++++
Sbjct: 125 MIIGVFAATDAILFYVFWEGMLIPMYLSIGMWGSTNRSYASIKFFLYTFLGSILMLVALL 184
Query: 339 YLYYISNKS--FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPT 396
YLY N++ F I ++ L+++ Q LF FF+AFA+K+P+WP+HTWLPDAH EAP+
Sbjct: 185 YLY---NQTGVFEIQKFYGLNLSLPVQELLFFAFFLAFAVKVPMWPVHTWLPDAHTEAPS 241
Query: 397 EGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKK 456
GSV+LAA+MLKLG YG LRFS+PI P AS + +I LSLI+IIYI L+A+VQ D+KK
Sbjct: 242 GGSVVLAALMLKLGIYGFLRFSMPIAPRASEELAWFMIVLSLIAIIYIGLVAIVQRDMKK 301
Query: 457 LIAYSSIAHMGFVTLGIFMLTKI------------SIQGAIIQMISHALISSAMFISIGF 504
LIAYSSIAHMGF TLG FM I S++GA++QMI+HA S AMF+ +G
Sbjct: 302 LIAYSSIAHMGFATLGCFMAYDIIRDTGSYQDAYMSLEGAVVQMIAHAFGSGAMFLGVGM 361
Query: 505 LYNQM--KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNF 562
L ++ +RLI+++GG+ +P F+ FF++F+++N LPGT+GF+GEFM+I+SA + +F
Sbjct: 362 LADRYYNHSRLINDYGGVATRMPVFAAFFMLFAMSNVGLPGTAGFVGEFMVIMSAFQAHF 421
Query: 563 CIGVLTSTALIFSAAYSLCLSKNIIF 588
IG + + LI SA+Y+L + K I F
Sbjct: 422 WIGAIAALTLILSASYTLWMYKRIFF 447
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 22/270 (8%)
Query: 629 SEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIV 688
S A+IK+F+ L S ML + LY TG E+Q + + N++ V L +
Sbjct: 162 SYASIKFFLYTFLGSILMLVALLYLYNQTGVFEIQKFYGL----NLSLPVQELLFFAFFL 217
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVII-YRLLIKCLLPLVI 743
+ K+ + P H W+PD + G S+++ L+ KL ++ + + + I +
Sbjct: 218 AFAVKVPMWPVHTWLPDAHTEAPSGGSVVLAALML---KLGIYGFLRFSMPIAPRASEEL 274
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIKTSHN 797
W +++L++ ++I + AI Q + K++IAYSSIAHMG M + II S+
Sbjct: 275 AW--FMIVLSLIAIIYIGLVAIVQRDMKKLIAYSSIAHMGFATLGCFMAYDIIRDTGSYQ 332
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
+ + S + + +I + F F + +L + N + ++ + G+ R P A
Sbjct: 333 D--AYMSLEGAVVQMIAHAFGSGAMFLGVGMLADRYYNHSRLINDYGGVATRMPVFAAFF 390
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
M+F S G P T GF +F + F+
Sbjct: 391 MLFAMSNVGLPGTAGFVGEFMVIMSAFQAH 420
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 22/190 (11%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ E P+ S ++ AA M+ GI+ R S P+ ++ L+ + +
Sbjct: 222 KVPMWPVHTWLPDAHTEAPSGGSVVL-AALMLKLGIYGFLRFSMPIAPRASEELAWFMIV 280
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTV--------------- 151
++ A ++GL+ I+Q D+K++IAYS+++ +G+ T+G AY +
Sbjct: 281 LSLIAIIYIGLVAIVQRDMKKLIAYSSIAHMGFATLGC-FMAYDIIRDTGSYQDAYMSLE 339
Query: 152 -SIFHLMTHAFFKALLFLSAGSIIIN-MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
++ ++ HAF +FL G + H++ I + GG+ MP+ ++ +S VG
Sbjct: 340 GAVVQMIAHAFGSGAMFLGVGMLADRYYNHSRLINDYGGVATRMPVFAAFFMLFAMSNVG 399
Query: 210 APFFSGFYSK 219
P +GF +
Sbjct: 400 LPGTAGFVGE 409
>gi|353526584|ref|YP_004927652.1| NADH dehydrogenase subunit 4 (mitochondrion) [Treubia lacunosa]
gi|336089510|gb|AEH99699.1| NADH dehydrogenase subunit 4 [Treubia lacunosa]
Length = 495
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 194/404 (48%), Positives = 280/404 (69%), Gaps = 12/404 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKI-------WIDYFNIYYFLGIDGLSLWFIPL 247
I IT L++ + + FF + D K W+ Y NI +++GIDG+SL+F+ L
Sbjct: 37 IRDITLWTSLMTFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVIL 96
Query: 248 TAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFII 306
T F+T I IL+ +K EYM AF I +I FC+LD ++FY+FFE+ LIP+FII
Sbjct: 97 TTFLTPICILVGFYSVKSYRKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFII 156
Query: 307 IGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWHQLSITKIEQI 364
IG WG R AA +FFLYTLMGSL ML++++++++ + + IL + S + QI
Sbjct: 157 IGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFS--ERRQI 214
Query: 365 WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPD 424
L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVILA I+LKLG YG LRFS+P+FP+
Sbjct: 215 LLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPE 274
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ YF+ I TLS+I+IIY SL + QID+KK+IAYSS+AHM FVT+G+F L I+G+
Sbjct: 275 ATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGS 334
Query: 485 IIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT 544
I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG+++ +P FS+ F+ F+LAN SLPGT
Sbjct: 335 ILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGT 394
Query: 545 SGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
S FIGEF+I++ A + N + L + +I AAYSL L ++F
Sbjct: 395 SSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVF 438
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ K + ++ GGL MPI I L L+ + P S F
Sbjct: 345 SSALFLCVGALYDRHK-TRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSF 397
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 138 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P ++I + F + P T F +F I F+ +
Sbjct: 359 HKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|149202652|ref|ZP_01879624.1| NADH dehydrogenase subunit M [Roseovarius sp. TM1035]
gi|149143934|gb|EDM31968.1| NADH dehydrogenase subunit M [Roseovarius sp. TM1035]
Length = 525
Score = 365 bits (938), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 178/395 (45%), Positives = 274/395 (69%), Gaps = 22/395 (5%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAF 273
+GF ++++ W+ + Y +G+DG+S+ F+ LT F+ + I S + ++ EYM AF
Sbjct: 71 TGFQFVEERE-WL--LGLKYKMGVDGISVLFVMLTTFMMPLTIAASWGVTTRVKEYMIAF 127
Query: 274 LILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLM 333
L+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT +GS+LM
Sbjct: 128 LLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLM 187
Query: 334 LISMIYLY--------------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIP 379
L++M+ ++ +++F+IL + + Q +F+ FF +FA+K+P
Sbjct: 188 LVAMVAMFSDAGTTDIAALLKHEFESETFSILG---VQVIGGMQTLMFLAFFASFAVKMP 244
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHV+APT GSV+LAAI+LK+G YG LRFSLP+FP S + L++ +S I
Sbjct: 245 MWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSEVLTPLVLWMSAI 304
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF + + GAI QM+SH IS A+F
Sbjct: 305 AIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGALF 364
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ +G +Y++M TR I +GG++N +P +++ F+ F++AN LPGTSGF+GEF+ ++ +
Sbjct: 365 LCVGVIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLVGVFQ 424
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
N + + ++ +I SAAY+L L + + V+G +I
Sbjct: 425 VNTWVAAVATSGVILSAAYALWLYRRV--VMGDLI 457
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + + L+ ++L+
Sbjct: 242 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKMGGYGFLRFSLPMFPIGSEVLTPLVLW 300
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 301 MSAIAIVYTSLVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMLSHG 357
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 358 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 415
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 39/304 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ L S ML + ++
Sbjct: 142 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFLGSVLMLVAMVAMFSDA 198
Query: 658 GTLELQSI---------FNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY- 707
GT ++ ++ F+++ + I + L L + K+ + P H W+PD +
Sbjct: 199 GTTDIAALLKHEFESETFSILGVQVIG-GMQTLMFLAFFASFAVKMPMWPVHTWLPDAHV 257
Query: 708 ----QGASIIITLLLSTTPK--LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
G+ ++ +LL L + ++ + + L PLV+ W ++ +++ +
Sbjct: 258 QAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSEVLTPLVL-W------MSAIAIVYTS 310
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F I G
Sbjct: 311 LVALAQSDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMLSHGF-ISG 361
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
A + + + + + T E+D + GL R P ALI M F + G P T GF +F
Sbjct: 362 ALFLCVGVIYDRMH-TREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLV 420
Query: 882 KIFE 885
+F+
Sbjct: 421 GVFQ 424
>gi|114327954|ref|YP_745111.1| NADH-quinone oxidoreductase chain M [Granulibacter bethesdensis
CGDNIH1]
gi|114316128|gb|ABI62188.1| NADH-quinone oxidoreductase chain M [Granulibacter bethesdensis
CGDNIH1]
Length = 506
Score = 365 bits (938), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 174/372 (46%), Positives = 268/372 (72%), Gaps = 4/372 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ F + Y +G+DG+S+ F+ L+ F+T I IL S D I ++ E+M AFL+L +++G
Sbjct: 74 WLPEFGVRYSVGVDGISVLFVLLSTFLTPICILASWDAIHTRVREFMIAFLVLETMMVGM 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D +LFYIFFEA LIP+++IIG WG + R YAA+KFFLYTL GS+LML++++ +++
Sbjct: 134 FSATDFLLFYIFFEAVLIPMYLIIGIWGHARRVYAALKFFLYTLAGSVLMLLALLTMWHY 193
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ + +I + Q WLF+ F +FA+K+P+WP+HTWLPDAHVEAPT GSVILA
Sbjct: 194 AGTT-DIPTLLHTRFPVHMQFWLFLAFLASFAVKVPMWPVHTWLPDAHVEAPTAGSVILA 252
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
++LK+G YG LRFS+P+ PDA YF+ L+ LS++++IY S++A Q ++KKLIAYSSI
Sbjct: 253 GVLLKMGGYGFLRFSVPMLPDAVEYFAPLMFALSVMAVIYTSIVAFAQENMKKLIAYSSI 312
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VT+GIF + + + GA+ QM+SH ++S+A+F+ +G +Y+++ T I+ +GG++
Sbjct: 313 AHMGVVTIGIFTVNQQGLSGALFQMLSHGVVSAALFLCVGVVYDRLHTLEINRYGGLVER 372
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P ++ F++F++A LPGT GF+GE ++++ A K + I +L ST +I A YSL L
Sbjct: 373 MPAYAAVFLVFTMATIGLPGTGGFVGEILVLIGAFKVSIWIALLGSTGMILGAVYSLWLY 432
Query: 584 KNIIFVLGQMIM 595
+ +I LG+M +
Sbjct: 433 RRVI--LGRMTL 442
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+ + + ++F
Sbjct: 226 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFSVPMLPDAVEYFAPLMFA 284
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + ++ Q ++K++IAYS+++ +G +T+G+ G+S ++F +++H
Sbjct: 285 LSVMAVIYTSIVAFAQENMKKLIAYSSIAHMGVVTIGIFTVNQQGLSG---ALFQMLSHG 341
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
A LFL G ++ + H +I GGL + MP L+ ++ +G P GF +
Sbjct: 342 VVSAALFLCVG-VVYDRLHTLEINRYGGLVERMPAYAAVFLVFTMATIGLPGTGGFVGEI 400
Query: 221 -------KKKIWI 226
K IWI
Sbjct: 401 LVLIGAFKVSIWI 413
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 144/312 (46%), Gaps = 22/312 (7%)
Query: 595 MISGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISI 652
M S + L Y+ E L+ + L + I ++ AA+K+F+ + S ML +
Sbjct: 133 MFSATDFLLFYIFFEAVLIPMYLIIGIWGHARRVY---AALKFFLYTLAGSVLMLLALLT 189
Query: 653 LYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASI 712
++ GT ++ ++ + + L + + K+ + P H W+PD + A
Sbjct: 190 MWHYAGTTDIPTLLH----TRFPVHMQFWLFLAFLASFAVKVPMWPVHTWLPDAHVEAPT 245
Query: 713 IITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFK 771
+++L+ K+ + + R + L V + ++ L++ ++I ++ A Q N K
Sbjct: 246 AGSVILAGVLLKMGGYGFL-RFSVPMLPDAVEYFAPLMFALSVMAVIYTSIVAFAQENMK 304
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
++IAYSSIAHMG++ I ++ + +F G+ + +F +G ++ +
Sbjct: 305 KLIAYSSIAHMGVVTIGIFTVNQQGLSGALFQMLSHGV--VSAALFLCVG----VVYDRL 358
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWL 891
+T E++ + GL +R P A + ++F + G P T GF + + F+ IW+
Sbjct: 359 HTL----EINRYGGLVERMPAYAAVFLVFTMATIGLPGTGGFVGEILVLIGAFKV-SIWI 413
Query: 892 LLLIIMCSLIGA 903
LL ++GA
Sbjct: 414 ALLGSTGMILGA 425
>gi|406916443|gb|EKD55458.1| hypothetical protein ACD_60C00007G0022 [uncultured bacterium]
Length = 507
Score = 365 bits (938), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 202/426 (47%), Positives = 292/426 (68%), Gaps = 27/426 (6%)
Query: 187 GGLYKYMPITCITSLIGLLSLVGA-PFFSGFYSK------DKKKIWIDYFNIYYFLGIDG 239
GG K I +++G++SL+ P + GF + +WI + I+Y +G+DG
Sbjct: 26 GGDRKANIARVIAAIVGIISLLLCIPLYLGFDPNSFAMQFQENHLWIRAYEIHYAVGVDG 85
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+SL I LT F L++IL IK ++A+YM+ FL + G++IG F A D +LFY+F+E
Sbjct: 86 ISLAMIILTNFTGLLVILAGCHAIKTRVAQYMATFLTMQGMMIGVFAATDAILFYVFWEG 145
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS--FNILSWHQL 356
LIP+++ IG WG +NRSYA+IKFFLYT +GS+LMLI+++YLY N++ F I ++ L
Sbjct: 146 MLIPMYLSIGMWGSANRSYASIKFFLYTFLGSILMLIALLYLY---NQTGVFEIQKFYDL 202
Query: 357 SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLR 416
+ Q LF FF+AFA+K+P+WP+HTWLPDAH EAP+ GSV+LAA+MLKLG YG LR
Sbjct: 203 PLDIHVQELLFFAFFLAFAVKVPMWPVHTWLPDAHTEAPSGGSVVLAALMLKLGIYGFLR 262
Query: 417 FSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
FS+P+ P AS + +I LSLI+I+YI L+A+VQ D+KKLIAYSSIAHMGF TLG FM+
Sbjct: 263 FSMPVAPLASQKLAWFMIVLSLIAIVYIGLVAIVQRDMKKLIAYSSIAHMGFATLGCFMV 322
Query: 477 TKI------------SIQGAIIQMISHALISSAMFISIGFLYNQM--KTRLISNFGGIIN 522
I S++GA++QMI+HA S AMF+ +G L ++ +RLI ++GG+
Sbjct: 323 YDIIRYTGSYQDAYMSLEGAVVQMIAHAFGSGAMFLGVGMLADRYYNHSRLIKDYGGVAT 382
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P F+ FF++F+++N LPGT+GF+GEFM+I+SA + F I V+ + LI SA+Y+L +
Sbjct: 383 RMPVFAAFFMLFAMSNVGLPGTAGFVGEFMVIMSAFQAQFWIAVIAALTLILSASYTLWM 442
Query: 583 SKNIIF 588
K + F
Sbjct: 443 YKRVFF 448
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 129/270 (47%), Gaps = 22/270 (8%)
Query: 629 SEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIV 688
S A+IK+F+ L S ML + LY TG E+Q +++ ++ V L +
Sbjct: 163 SYASIKFFLYTFLGSILMLIALLYLYNQTGVFEIQKFYDL----PLDIHVQELLFFAFFL 218
Query: 689 GLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVII-YRLLIKCLLPLVI 743
+ K+ + P H W+PD + G S+++ L+ KL ++ + + + + L +
Sbjct: 219 AFAVKVPMWPVHTWLPDAHTEAPSGGSVVLAALML---KLGIYGFLRFSMPVAPLASQKL 275
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG------LMLFSIISIKTSHN 797
W +++L++ +++ + AI Q + K++IAYSSIAHMG M++ II S+
Sbjct: 276 AW--FMIVLSLIAIVYIGLVAIVQRDMKKLIAYSSIAHMGFATLGCFMVYDIIRYTGSYQ 333
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
+ + S + + +I + F F + +L + N + + + G+ R P A
Sbjct: 334 D--AYMSLEGAVVQMIAHAFGSGAMFLGVGMLADRYYNHSRLIKDYGGVATRMPVFAAFF 391
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
M+F S G P T GF +F + F+ Q
Sbjct: 392 MLFAMSNVGLPGTAGFVGEFMVIMSAFQAQ 421
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
YD PL I F + K +P+HTWLPD+ E P+ S ++ AA M+ GI+
Sbjct: 200 YDLPLDIHVQELLFFAFFLAFAVKVPMWPVHTWLPDAHTEAPSGGSVVL-AALMLKLGIY 258
Query: 86 MITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+ L++ L+ + + ++ A ++GL+ I+Q D+K++IAYS+++ +G+ T+G
Sbjct: 259 GFLRFSMPVAPLASQKLAWFMIVLSLIAIVYIGLVAIVQRDMKKLIAYSSIAHMGFATLG 318
Query: 144 L----GVSAYTVS-----------IFHLMTHAFFKALLFLSAGSIIIN-MKHNQDIRNMG 187
+ YT S + ++ HAF +FL G + H++ I++ G
Sbjct: 319 CFMVYDIIRYTGSYQDAYMSLEGAVVQMIAHAFGSGAMFLGVGMLADRYYNHSRLIKDYG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
G+ MP+ ++ +S VG P +GF +
Sbjct: 379 GVATRMPVFAAFFMLFAMSNVGLPGTAGFVGE 410
>gi|407798886|ref|ZP_11145789.1| NADH-quinone oxidoreductase subunit m [Oceaniovalibus guishaninsula
JLT2003]
gi|407059234|gb|EKE45167.1| NADH-quinone oxidoreductase subunit m [Oceaniovalibus guishaninsula
JLT2003]
Length = 513
Score = 365 bits (937), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 184/395 (46%), Positives = 271/395 (68%), Gaps = 16/395 (4%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P +GF ++ W+ N Y +G+DG+S+ F+ LT F+ ++IL D+ ++ EYM
Sbjct: 58 PEVAGFQMVERHD-WLLGLN--YKVGVDGISVLFVLLTTFLMPLVILSCWDVTFRVKEYM 114
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
AFL+L L++G F ALD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYT +GS
Sbjct: 115 IAFLVLETLMLGVFVALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGS 174
Query: 331 LLMLISMIYLYYISNKS-FNILSWHQLSITKIE----------QIWLFITFFIAFAIKIP 379
+LML++MI +Y + + L H S + Q L++ FF +FA+K+P
Sbjct: 175 VLMLVAMIAMYIDAGTTDIPALLGHSFSAAPVGIGAITLPGGLQTLLWLAFFASFAVKMP 234
Query: 380 IWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+WP+HTWLPDAHV+APT GSV+LAAI+LKLG YG +RFSLP+FP AS + ++ LS I
Sbjct: 235 MWPVHTWLPDAHVQAPTAGSVVLAAILLKLGGYGFIRFSLPMFPVASDLLAPFVLWLSAI 294
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT GIF+ + + GAI QMISH +S A+F
Sbjct: 295 AIVYTSLVALAQTDMKKLIAYSSVAHMGYVTAGIFVANQQGLDGAIFQMISHGFVSGALF 354
Query: 500 ISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ +G +Y++M TR I +GG+ N +P ++ F++F++AN LPGTSGF+GEF+ ++ +
Sbjct: 355 LCVGVIYDRMHTRDIDAYGGLANRMPAYAAVFLLFTMANVGLPGTSGFVGEFLTLMGMFQ 414
Query: 560 FNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMI 594
N + ++ ++ +I SA Y+L L + + VLG +I
Sbjct: 415 ANTWVALVATSGVILSAGYALWLYRRV--VLGDLI 447
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F +++ L+ +L+
Sbjct: 232 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAILLKLGGYGFIRFSLPMFPVASDLLAPFVLW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+ AI + L+ + Q D+K++IAYS+++ +GY+T G+ V+ +IF +++H F
Sbjct: 291 LSAIAIVYTSLVALAQTDMKKLIAYSSVAHMGYVTAGIFVANQQGLDGAIFQMISHGFVS 350
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H +DI GGL MP L+ ++ VG P SGF +
Sbjct: 351 GALFLCVG-VIYDRMHTRDIDAYGGLANRMPAYAAVFLLFTMANVGLPGTSGFVGE 405
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 136/313 (43%), Gaps = 40/313 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ L S ML + +Y
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIYAS---FKFFLYTFLGSVLMLVAMIAMYIDA 188
Query: 658 GTLELQSI----FNVIKLN----NINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQG 709
GT ++ ++ F+ + + + L L + K+ + P H W+PD +
Sbjct: 189 GTTDIPALLGHSFSAAPVGIGAITLPGGLQTLLWLAFFASFAVKMPMWPVHTWLPDAHVQ 248
Query: 710 ASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKIL----LILAIFSLIIGN 761
A T + L I+ +L I+ LP+ +L L L+ +++ +
Sbjct: 249 AP--------TAGSVVLAAILLKLGGYGFIRFSLPMFPVASDLLAPFVLWLSAIAIVYTS 300
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
+ A+ Q + K++IAYSS+AHMG + I D +F +I++ F
Sbjct: 301 LVALAQTDMKKLIAYSSVAHMGYVTAGIFVANQ--------QGLDGAIFQMISHGFVSGA 352
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
F + ++ + T ++D + GL R P A + ++F + G P T GF +F
Sbjct: 353 LFLCVGVIYDRM--HTRDIDAYGGLANRMPAYAAVFLLFTMANVGLPGTSGFVGEFLTLM 410
Query: 882 KIFETQKIWLLLL 894
+F+ W+ L+
Sbjct: 411 GMFQANT-WVALV 422
>gi|374092024|gb|AEY83676.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Treubia
lacunosa]
Length = 437
Score = 365 bits (937), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 267/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYRKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS+ F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSIIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G+ + + + ++ GGL MPI I L L+ + P S F
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSF 354
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P ++I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|11467100|ref|NP_054401.1| NADH dehydrogenase subunit 4 [Marchantia polymorpha]
gi|464242|sp|P26848.2|NU4M_MARPO RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName:
Full=NADH dehydrogenase subunit 4
gi|786185|gb|AAC09398.1| nad4 [Marchantia polymorpha]
Length = 495
Score = 365 bits (937), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 200/419 (47%), Positives = 284/419 (67%), Gaps = 21/419 (5%)
Query: 180 NQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKI-------WIDYFNIY 232
N +R + G IT TSLI L + FF + D K W+ Y NI
Sbjct: 31 NSRVRLIRG------ITIWTSLITFLY---SLFFWIRFENDTAKFQFVETIRWLPYSNIN 81
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I FC+LD ++
Sbjct: 82 FYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLI 141
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FN 349
FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++ + +
Sbjct: 142 FYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQ 201
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVILA I+LKL
Sbjct: 202 ILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYSS+AHM FV
Sbjct: 260 GTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFV 319
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
T+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG+++ +P FS
Sbjct: 320 TIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFST 379
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL L ++F
Sbjct: 380 IFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVF 438
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MPI
Sbjct: 345 SSALFLCVGALYDRHK-TRIVKYYGGLVSTMPI 376
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 138 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 359 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|374092026|gb|AEY83677.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Treubia
pygmaea]
Length = 437
Score = 365 bits (937), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 267/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYRKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS+ F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSIIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G+ + + + ++ GGL MPI I L L+ + P S F
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSF 354
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P ++I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|188580273|ref|YP_001923718.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium populi BJ001]
gi|179343771|gb|ACB79183.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium populi BJ001]
Length = 527
Score = 365 bits (936), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 188/423 (44%), Positives = 279/423 (65%), Gaps = 5/423 (1%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
L+ + I+ + + + T +T L+ L++ S + + W+
Sbjct: 15 LAGAAFILTLGEETAAVKRNARWAALITTVVTFLLSLVAWARYDIASPSFQLVESHAWLA 74
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
I + LG+DG S+ I LT F+ I S L ++ ++ EY AFL+L +IG FCA
Sbjct: 75 E-TIRFKLGVDGFSMPLILLTTFLMPFCIGASWLSVENRVKEYFVAFLVLETTMIGVFCA 133
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 134 LDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAIMAMYWEAGT 193
Query: 347 S-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAI 405
+ L H+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I
Sbjct: 194 TDIPTLLAHRFPVGL--QWWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251
Query: 406 MLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAH 465
+LK+G YG +R SLP+ PDAS F+ L+ LS+I+II+ SL AM+Q DIKKLIAYSS+AH
Sbjct: 252 LLKMGGYGFIRISLPMLPDASASFAPLVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAH 311
Query: 466 MGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIP 525
MGFVTLG+F L + IQGA+ MISH ++S A+F+ +G +Y++M TR I+ +GG++ +P
Sbjct: 312 MGFVTLGLFTLNEQGIQGALFLMISHGIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMP 371
Query: 526 HFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKN 585
++ ++F++AN LPGTSGF+GEF+ ++ A + N + + +I SA Y+L L
Sbjct: 372 LYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFRANPTVAFFSVFGIILSAGYALWLYAR 431
Query: 586 IIF 588
+I+
Sbjct: 432 VIY 434
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R+S P+ ++ + + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRISLPMLPDASASFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I F L ++Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSVIAIIFTSLTAMMQTDIKKLIAYSSVAHMGFVTLGLFTLNEQGIQG---ALFLMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL K MP+ ++ ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVKRMPLYAAAMMVFTMANVGLPGTSGFVGE 396
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 135/296 (45%), Gaps = 29/296 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I++S K+F+ +L S ML I +Y
Sbjct: 135 DLVLFYLFFEAGLIPMFLIIGIWGGKRRIYAS---FKFFLYTLLGSVLMLLAIMAMYWEA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
GT ++ ++ + + L + K+ + P H W+PD + G+ I
Sbjct: 192 GTTDIPTLLA----HRFPVGLQWWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+ +LL K+ + I R+ + L ++ ++ L++ ++I +++A+ Q + K+
Sbjct: 248 LAGILL----KMGGYGFI-RISLPMLPDASASFAPLVFALSVIAIIFTSLTAMMQTDIKK 302
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHMG + + ++ LF +I++ + GA + + + +
Sbjct: 303 LIAYSSVAHMGFVTLGLFTLNE--------QGIQGALFLMISHGI-VSGALFLCVGVVYD 353
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ T E+ + GL +R P A MM+F + G P T GF +F F
Sbjct: 354 RMH-TREIAAYGGLVKRMPLYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFRANP 408
>gi|220904921|ref|YP_002480233.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
gi|219869220|gb|ACL49555.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
Length = 495
Score = 365 bits (936), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 267/369 (72%), Gaps = 1/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+ + WI+ NI Y LGIDG+S+ F+PLTA ITL+ +++S I K+ E+ + L+L G
Sbjct: 64 ENRPWIESLNIRYSLGIDGISVLFLPLTALITLMGVVVSFKSITLKVKEFFVSLLLLEGA 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCALD MLFY+F+EA LIP+F++IG WGG R YA +KFFLYTL+GSLLML+ +I
Sbjct: 124 MIGVFCALDLMLFYVFWEAMLIPMFLLIGVWGGPRRIYATVKFFLYTLLGSLLMLVGIIL 183
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY +F++L+ + +K Q+ LF FF AFA+K+P+WP+HTWLPDAH EAPT GS
Sbjct: 184 LYLKGGNTFDMLALAGQNYSKDLQLLLFWAFFAAFAVKVPMWPVHTWLPDAHTEAPTAGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA +++K+G YG LR SLPI P A++ ++ LS+I+I+Y +L+ + Q DIK+LIA
Sbjct: 244 VILAGVLIKMGAYGFLRISLPILPYAAWTLLTPMLILSVIAIVYGALVCLAQTDIKRLIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS++HMGFVTLG+F LT+ ++G+IIQM++H +++ A+F+++G +Y++ TR I ++GG
Sbjct: 304 YSSVSHMGFVTLGLFALTQKGVEGSIIQMLNHGIVTGALFLAVGMIYDRTHTRQIRDYGG 363
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ +P + FF++F+LA LPGT+GFIGEF+I+L + V+ S+ LI A Y
Sbjct: 364 LATTMPVMAGFFLVFTLAAIGLPGTNGFIGEFLILLGGFERAPWAAVVASSGLILGAWYM 423
Query: 580 LCLSKNIIF 588
L L + + F
Sbjct: 424 LWLYQRVFF 432
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSN-TALSIILF 106
K +P+HTWLPD+ E PT A ++I A ++ G + R+S P+ + T L+ +L
Sbjct: 221 KVPMWPVHTWLPDAHTEAPT-AGSVILAGVLIKMGAYGFLRISLPILPYAAWTLLTPMLI 279
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q DIKR+IAYS++S +G++T+GL GV SI ++ H
Sbjct: 280 LSVIAIVYGALVCLAQTDIKRLIAYSSVSHMGFVTLGLFALTQKGVEG---SIIQMLNHG 336
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL+ G +I + H + IR+ GGL MP+ L+ L+ +G P +GF +
Sbjct: 337 IVTGALFLAVG-MIYDRTHTRQIRDYGGLATTMPVMAGFFLVFTLAAIGLPGTNGFIGE 394
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 25/261 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCS--VLALSLLLIIV 688
A +K+F+ +L S ML GI +LY L+ + F+++ L N S + L
Sbjct: 162 ATVKFFLYTLLGSLLMLVGIILLY-----LKGGNTFDMLALAGQNYSKDLQLLLFWAFFA 216
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV--INWQ 746
+ K+ + P H W+PD + A +++L+ L + ++ LP++ W
Sbjct: 217 AFAVKVPMWPVHTWLPDAHTEAPTAGSVILAGV----LIKMGAYGFLRISLPILPYAAWT 272
Query: 747 KI--LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ +LIL++ +++ G + + Q + KR+IAYSS++HMG + + ++ I
Sbjct: 273 LLTPMLILSVIAIVYGALVCLAQTDIKRLIAYSSVSHMGFVTLGLFALTQKGVEGSIIQM 332
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ G I+T A+ A G+I T ++ + GL P A ++F +
Sbjct: 333 LNHG---IVTG--ALFLAVGMI-----YDRTHTRQIRDYGGLATTMPVMAGFFLVFTLAA 382
Query: 865 AGFPPTIGFYAKFFIFEKIFE 885
G P T GF +F I FE
Sbjct: 383 IGLPGTNGFIGEFLILLGGFE 403
>gi|148266242|ref|YP_001232948.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Geobacter uraniireducens Rf4]
gi|146399742|gb|ABQ28375.1| NADH dehydrogenase subunit M [Geobacter uraniireducens Rf4]
Length = 525
Score = 365 bits (936), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 183/392 (46%), Positives = 280/392 (71%), Gaps = 10/392 (2%)
Query: 207 LVGAPFFSGFYSKDKKKI-----WIDY--FNIYYFLGIDGLSLWFIPLTAFITLIIILIS 259
+V P +GF + + + WI F + Y +GIDG+SLW + LT FI I IL +
Sbjct: 46 IVSLPLVTGFQNNAEFQFVEMIPWIAAGPFQMNYHIGIDGISLWLVILTTFIMPIAILST 105
Query: 260 LD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYA 318
+++K+ EYM L+L ++GAF +LD LFYIF+E LIP++ IIG WGG N+ YA
Sbjct: 106 WTAVEEKVKEYMICLLLLEVGMLGAFISLDLFLFYIFWEVMLIPMYFIIGIWGGKNKIYA 165
Query: 319 AIKFFLYTLMGSLLMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLFITFFIAFAIK 377
A+KFF+YT++GSLLML+++I LY+ + FN+L ++QLS+ Q W+F+ F +AFAIK
Sbjct: 166 AVKFFIYTMVGSLLMLVALITLYFKAGGGDFNLLKFYQLSLDPATQTWMFLAFALAFAIK 225
Query: 378 IPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLS 437
+P++P+HTWLPDAH EAPT GSVILAA++LK+G YG +RF++P+FP A+ F+ LI TLS
Sbjct: 226 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFVRFAIPLFPIATAQFTPLIATLS 285
Query: 438 LISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSA 497
+I IIY +L+AMVQ D+KKL+AYSS+AH+GFV LG+F L + I G ++QM++H + + A
Sbjct: 286 VIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGVFALNQQGIAGGMLQMLNHGVSTGA 345
Query: 498 MFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+F+ +GF+Y + TRLI++FGG+ +P F+ F+I +L++ LPGT+GF+GEF++++ +
Sbjct: 346 LFLIVGFIYERRHTRLITDFGGLSKQMPVFATIFMIVTLSSIGLPGTNGFVGEFLVLIGS 405
Query: 558 VKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
+ + ++ S+ +I SA Y L + + ++F
Sbjct: 406 FESSIRWYSIIASSGVILSAVYMLWMFQRVMF 437
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K FPLHTWLPD+ E PT A ++I AA ++ G + R + PLF ++ + +I
Sbjct: 225 KVPMFPLHTWLPDAHTEAPT-AGSVILAAVLLKMGTYGFVRFAIPLFPIATAQFTPLIAT 283
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K+++AYS+++ LG++ +G L + ++ H
Sbjct: 284 LSVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGVFALNQQGIAGGMLQMLNHGVST 343
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I +H + I + GGL K MP+ +I LS +G P +GF +
Sbjct: 344 GALFLIVG-FIYERRHTRLITDFGGLSKQMPVFATIFMIVTLSSIGLPGTNGFVGE 398
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 148/323 (45%), Gaps = 36/323 (11%)
Query: 578 YSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKY 635
Y +CL + +LG I + +L Y+ E+M + + +I KN I+ AA+K+
Sbjct: 116 YMICLLLLEVGMLGAFISL---DLFLFYIFWEVMLIPMYFIIGIWGGKNKIY---AAVKF 169
Query: 636 FILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--K 693
FI ++ S ML + LY G + FN++K ++ + + + L+F K
Sbjct: 170 FIYTMVGSLLMLVALITLYFKAGGGD----FNLLKFYQLSLDPATQTWMFLAFALAFAIK 225
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLIL 752
+ + P H W+PD + A +++L+ K+ + + R I + ++ L
Sbjct: 226 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFV-RFAIPLFPIATAQFTPLIATL 284
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT---SHNNLIIFNSCDS-- 807
++ +I + A+ Q + K+++AYSS+AH+G ++ + ++ + L + N S
Sbjct: 285 SVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGVFALNQQGIAGGMLQMLNHGVSTG 344
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
LF I+ +I+ + +T TD F GL ++ P A I MI S G
Sbjct: 345 ALFLIVGFIYE-----------RRHTRLITD----FGGLSKQMPVFATIFMIVTLSSIGL 389
Query: 868 PPTIGFYAKFFIFEKIFETQKIW 890
P T GF +F + FE+ W
Sbjct: 390 PGTNGFVGEFLVLIGSFESSIRW 412
>gi|399090325|ref|ZP_10754026.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Caulobacter sp. AP07]
gi|398027954|gb|EJL21480.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Caulobacter sp. AP07]
Length = 494
Score = 365 bits (936), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 180/360 (50%), Positives = 257/360 (71%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFI-TLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALD 288
++Y +G+DG+S+ F+ LTAF+ L II I K++ EY+ FL+L L+IG FCALD
Sbjct: 76 GLHYRMGVDGISILFVLLTAFLLPLCIIAGWKSIDKRIVEYLICFLVLETLVIGVFCALD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFY+FFE L+P+F+IIG WGG R YAA KFFLYTL+GS+LML +++ + I++ S
Sbjct: 136 LILFYLFFEGGLVPMFLIIGIWGGKRRIYAAYKFFLYTLLGSVLMLAAILSMIAIAHTS- 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+LK
Sbjct: 195 SIPVLMTYKFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
LG YG +RFSLP+FP+AS F L+ +S I+I+Y SL+A Q DIKKLIAYSS+AHMGF
Sbjct: 255 LGGYGFMRFSLPMFPNASEMFQPLVFAMSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGF 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VT+GIF QGA+ QM+SH +IS A+F+ +G +Y++M TR I+ +GG+ N +P ++
Sbjct: 315 VTMGIFSGNAQGEQGALFQMLSHGVISGALFLCVGVVYDRMHTREIAFYGGLTNRMPWYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++ N LPGTSGF+GE + ++ K + ++ +T +I SA Y+L L + ++F
Sbjct: 375 ATFMLFTMGNVGLPGTSGFVGEILTMVGTYKASTWTAIVATTGVILSAVYALNLYRRVMF 434
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S P+F ++ ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKLGGYGFMRFSLPMFPNASEMFQPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ Q DIK++IAYS+++ +G++T+G+ ++F +++H
Sbjct: 282 MSAIAIVYTSLVAFRQTDIKKLIAYSSVAHMGFVTMGIFSGNAQGEQGALFQMLSHGVIS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP T ++ + VG P SGF +
Sbjct: 342 GALFLCVG-VVYDRMHTREIAFYGGLTNRMPWYAATFMLFTMGNVGLPGTSGFVGE 396
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 35/287 (12%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I+ AA K+F+ +L S ML I + I
Sbjct: 135 DLILFYLFFEGGLVPMFLIIGIWGGKRRIY---AAYKFFLYTLLGSVLMLAAILSMIAIA 191
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
T S V+ + L + K+ + P H W+PD + A +++
Sbjct: 192 HT----SSIPVLMTYKFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYN 769
L+ I+ +L ++ LP+ N +Q ++ ++ +++ ++ A Q +
Sbjct: 248 LAG--------ILLKLGGYGFMRFSLPMFPNASEMFQPLVFAMSAIAIVYTSLVAFRQTD 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K++IAYSS+AHMG + I S +F G+ I GA + + +
Sbjct: 300 IKKLIAYSSVAHMGFVTMGIFSGNAQGEQGALFQMLSHGV---------ISGALFLCVGV 350
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ + T E+ + GL R PW A M+F G P T GF +
Sbjct: 351 VYDRMH-TREIAFYGGLTNRMPWYAATFMLFTMGNVGLPGTSGFVGE 396
>gi|14272190|emb|CAC39487.1| NADH dehydrogenase subunit 4 [Riccia fluitans]
Length = 418
Score = 365 bits (936), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 187/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 4 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 64 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+PIFP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPIFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 156 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPIFPEATLYFTPFIY 214
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 215 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 274
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 275 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 306
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 68 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 184 GILL----KLGTYGFL-RFSIPIFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 239 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 288
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 289 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|374092054|gb|AEY83691.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Targionia
hypophylla]
Length = 410
Score = 364 bits (935), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 4 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 64 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMVSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 156 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 214
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 215 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMVSHGLV 274
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 275 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 306
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 68 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 184 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 239 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMVSHGL--VSSALFLCVGA------LYDR-- 288
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 289 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|339319424|ref|YP_004679119.1| NADH:ubiquinone oxidoreductase subunit M [Candidatus Midichloria
mitochondrii IricVA]
gi|338225549|gb|AEI88433.1| NADH:ubiquinone oxidoreductase subunit M [Candidatus Midichloria
mitochondrii IricVA]
Length = 467
Score = 364 bits (934), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/381 (50%), Positives = 274/381 (71%), Gaps = 4/381 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+KK W +NI Y LGID +SL+FI LT F++LI I+ S + IK K+ E+ + L+L GL
Sbjct: 44 EKKAWFAEYNISYHLGIDIISLYFILLTTFLSLICIVASWNSIKDKVREFFALLLLLEGL 103
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
IIG F A D +LFY+FFE LIP+F IIG WGG NR YA+ KFFLYTL GS+L L++++Y
Sbjct: 104 IIGVFAAADIVLFYLFFETVLIPMFFIIGIWGGENRIYASFKFFLYTLFGSVLFLLAILY 163
Query: 340 LYYISNKSFNILSWHQLSITKIE-QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
+ + S + L ++ IE Q WL+ F+AFAIK+P+WP+HTWLPDAHV+APT G
Sbjct: 164 MIFYSETADIQLLVEKVPHYNIETQKWLWAALFMAFAIKVPMWPLHTWLPDAHVQAPTAG 223
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SV+LA ++LKLG YG LRFS+P+ P+ S YF++ +I LS++++IY SL+A++Q D+KK+I
Sbjct: 224 SVMLAGVLLKLGGYGFLRFSIPMLPEGSIYFADFVIILSIVAVIYTSLVALMQTDMKKMI 283
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS+AHMG+VT G+F T I+G+I M+SH LISSA+F+ IG LY++M T+ IS +G
Sbjct: 284 AYSSVAHMGYVTAGMFTFTSQGIEGSIFTMLSHGLISSALFLCIGVLYDRMHTKEISFYG 343
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ +P F++FF+IF L + LP TSGF+GEF ++ +A K GVL + ++ AAY
Sbjct: 344 GLTKKMPTFALFFMIFMLGSVGLPATSGFVGEFFVLFAAFKTKNLYGVLLALGMVLGAAY 403
Query: 579 SLCLSKNIIF--VLGQMIMIS 597
L L ++F + GQ++ I+
Sbjct: 404 MLWLYARLMFGQLKGQLVEIT 424
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +PLHTWLPD+ ++ PT S ++ A ++ G + R S P+ + + + I
Sbjct: 202 KVPMWPLHTWLPDAHVQAPTAGSVML-AGVLLKLGGYGFLRFSIPMLPEGSIYFADFVII 260
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L+ ++Q D+K++IAYS+++ +GY+T G+ G+ SIF +++H
Sbjct: 261 LSIVAVIYTSLVALMQTDMKKMIAYSSVAHMGYVTAGMFTFTSQGIEG---SIFTMLSHG 317
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + H ++I GGL K MP + +I +L VG P SGF
Sbjct: 318 LISSALFLCIG-VLYDRMHTKEISFYGGLTKKMPTFALFFMIFMLGSVGLPATSGF 372
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 135/275 (49%), Gaps = 21/275 (7%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGI--TGTLELQSIFNVIKLNNINCSVLA 680
+N I++S K+F+ + S +L+ ++ILY I + T ++Q + + NI
Sbjct: 137 ENRIYAS---FKFFLYTLFGS--VLFLLAILYMIFYSETADIQLLVEKVPHYNIETQKWL 191
Query: 681 LSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLL 739
+ L + + K+ + P H W+PD + Q + +L KL + + R I L
Sbjct: 192 WAALFM--AFAIKVPMWPLHTWLPDAHVQAPTAGSVMLAGVLLKLGGYGFL-RFSIPMLP 248
Query: 740 PLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNL 799
I + ++IL+I ++I ++ A+ Q + K+MIAYSS+AHMG + + + +
Sbjct: 249 EGSIYFADFVIILSIVAVIYTSLVALMQTDMKKMIAYSSVAHMGYVTAGMFTFTSQGIEG 308
Query: 800 IIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
IF GL I + +F +G +L + T E+ + GL ++ P AL MI
Sbjct: 309 SIFTMLSHGL--ISSALFLCIG------VLYDRM--HTKEISFYGGLTKKMPTFALFFMI 358
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLL 894
FM G P T GF +FF+ F+T+ ++ +LL
Sbjct: 359 FMLGSVGLPATSGFVGEFFVLFAAFKTKNLYGVLL 393
>gi|254294090|ref|YP_003060113.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Hirschia baltica ATCC 49814]
gi|254042621|gb|ACT59416.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hirschia
baltica ATCC 49814]
Length = 493
Score = 364 bits (934), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 190/360 (52%), Positives = 262/360 (72%), Gaps = 2/360 (0%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
I Y LG+DG+S+ I LT F+ I +L S + IK + AEYM AFL+L L++G FCA+D
Sbjct: 76 QISYKLGVDGMSMLLILLTTFLMPICVLASWNNIKIRFAEYMIAFLVLETLMLGVFCAMD 135
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSF 348
+LFYIFFE LIP+FIIIG WGG+NR YAA KFFLYTL+GSL +L ++IY+Y ++ +
Sbjct: 136 LVLFYIFFEGGLIPMFIIIGIWGGANRLYAAFKFFLYTLLGSLALLAALIYIY-VTVGTT 194
Query: 349 NILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLK 408
+I + Q + Q WL++ FF +FA+K+P++P+HTWLPDAHV+APT GSVILA ++LK
Sbjct: 195 DIPTLQQHAFAPEVQTWLWLAFFASFAVKLPMFPVHTWLPDAHVQAPTAGSVILAGVLLK 254
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
+G YG+LRFSLP+FPDAS F L+ TLS+I++IY SL+A Q D+KKLIAYSS+AHMG
Sbjct: 255 MGGYGMLRFSLPMFPDASVLFQPLVFTLSVIAVIYASLVAFRQTDMKKLIAYSSVAHMGL 314
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFS 528
VTLGIF + IQGAI QM SH LISSA+F+ +G +Y+++ TR I+ +GG+++ +P ++
Sbjct: 315 VTLGIFAFNEEGIQGAIFQMFSHGLISSALFLCVGVVYDRLHTRDIAAYGGLVHRMPIYA 374
Query: 529 VFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+ F++AN LPGTSGFIGE + ++ K N + +I SA Y L L + +F
Sbjct: 375 ALFMFFTMANVGLPGTSGFIGEIVSMVGGFKANPWAAAGAAIGMILSAVYMLTLFRATVF 434
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILF-I 107
K FP+HTWLPD+ ++ PT S ++ + G M+ P+F ++ ++F +
Sbjct: 223 KLPMFPVHTWLPDAHVQAPTAGSVILAGVLLKMGGYGMLRFSLPMFPDASVLFQPLVFTL 282
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ Q D+K++IAYS+++ +G +T+G+ G+ +IF + +H
Sbjct: 283 SVIAVIYASLVAFRQTDMKKLIAYSSVAHMGLVTLGIFAFNEEGIQG---AIFQMFSHGL 339
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + H +DI GGL MPI + ++ VG P SGF
Sbjct: 340 ISSALFLCVG-VVYDRLHTRDIAAYGGLVHRMPIYAALFMFFTMANVGLPGTSGF 393
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 693 KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKI 748
KL + P H W+PD + A +++L+ L + +++ LP+ + +Q +
Sbjct: 223 KLPMFPVHTWLPDAHVQAPTAGSVILAGV----LLKMGGYGMLRFSLPMFPDASVLFQPL 278
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ L++ ++I ++ A Q + K++IAYSS+AHMGL+ I + IF G
Sbjct: 279 VFTLSVIAVIYASLVAFRQTDMKKLIAYSSVAHMGLVTLGIFAFNEEGIQGAIFQMFSHG 338
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
L I + +F +G T ++ + GL R P A + M F + G P
Sbjct: 339 L--ISSALFLCVGVV--------YDRLHTRDIAAYGGLVHRMPIYAALFMFFTMANVGLP 388
Query: 869 PTIGFYAK 876
T GF +
Sbjct: 389 GTSGFIGE 396
>gi|374092048|gb|AEY83688.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Ricciocarpos
natans]
Length = 437
Score = 364 bits (934), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|374092030|gb|AEY83679.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Asterella
blumeana]
Length = 437
Score = 364 bits (934), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGSTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TG+
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGS 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|374092036|gb|AEY83682.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Corsinia
coriandra]
gi|374092040|gb|AEY83684.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Monosolenium
tenerum]
Length = 437
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|374092046|gb|AEY83687.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Riccia
breidleri]
Length = 437
Score = 363 bits (933), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|374092028|gb|AEY83678.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Blasia
pusilla]
Length = 437
Score = 363 bits (933), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|374092032|gb|AEY83680.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Bucegia
romanica]
Length = 437
Score = 363 bits (932), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|328775173|gb|AEB39981.1| NADH dehydrogenase subunit 4 [Funaria hygrometrica]
Length = 495
Score = 363 bits (932), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 188/367 (51%), Positives = 265/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+ I IL+ IK EYM AFLI +I
Sbjct: 74 WLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++++++
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFF 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNIIF 588
L +IF
Sbjct: 432 LYNRVIF 438
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G ++ + + ++ GGL MP+
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVKYYGGLVSTMPM 376
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +G +L +
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVG------VLYDR-- 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 359 HKTRLVKYYGGLVSTMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|374092052|gb|AEY83690.1| NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sphaerocarpos donnellii]
Length = 436
Score = 363 bits (931), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 30 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 89
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 90 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 149
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 150 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 207
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 208 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 267
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 268 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 327
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 328 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 387
Query: 582 LSKNIIF 588
L ++F
Sbjct: 388 LYNRVVF 394
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 182 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 240
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 241 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 300
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 301 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 332
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 94 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 153
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 154 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 209
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 210 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 264
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 265 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 314
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 315 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 369
>gi|374092034|gb|AEY83681.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Conocephalum
conicum]
Length = 434
Score = 363 bits (931), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 266/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 28 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 87
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 88 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 147
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 148 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 205
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 206 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 265
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 266 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 325
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 326 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 385
Query: 582 LSKNIIF 588
L ++F
Sbjct: 386 LYNRVVF 392
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 180 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 238
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 239 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 298
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 299 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 330
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 92 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 151
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 152 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 207
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 208 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 262
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 263 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 312
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 313 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 367
>gi|374092066|gb|AEY83697.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Radula
complanata]
Length = 437
Score = 362 bits (930), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 265/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILPTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 303 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILPTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|221215755|ref|ZP_03588715.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit
m) (ndh-1 subunit m) [Burkholderia multivorans CGD1]
gi|221164367|gb|EED96853.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit
m) (ndh-1 subunit m) [Burkholderia multivorans CGD1]
Length = 557
Score = 362 bits (929), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 186/445 (41%), Positives = 305/445 (68%), Gaps = 19/445 (4%)
Query: 188 GLYKYMPITCITSLIGLLSLVGA--PFFSGFYSKDKKKIWID------YFNIYYFLGIDG 239
G +++ T + +LIG ++ + A P +GF +++ F + G+DG
Sbjct: 73 GSDQHLQRTRVIALIGAIAGLAAVVPIVAGFDPHSAAMQFVESRNGLSAFGAGWRTGVDG 132
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
SLW + LTAF TL++++ S + ++A+Y ++FLILSGL+IG F A DG+LF+IFFEA
Sbjct: 133 ASLWLVVLTAFTTLVVVVASWQAVTVRVAQYYASFLILSGLMIGVFVAQDGLLFFIFFEA 192
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
TLIP++++IGTWG +R YAA+KFF + GSLL+L++M+YLY S+ +F++ +W L +
Sbjct: 193 TLIPLYLLIGTWGREHRVYAAVKFFFVSFAGSLLLLMAMLYLYAKSH-TFDMAAWRTLQL 251
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+
Sbjct: 252 GFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFA 309
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LPI PDAS++F+ +I LSL +I+Y SL+A+ Q D KL+AYS++AHMG VTLG+F+ +
Sbjct: 310 LPITPDASHFFAPAVIALSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNR 369
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
I ++GAI+Q++S+ ++ AM + L ++ K R ++ +GG+ + +P F++F ++F++AN
Sbjct: 370 IGVEGAIVQLVSYGFVAGAMLLCASVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMAN 429
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF------VLGQ 592
LPGTSGF+GEFM+I+ A++ NF IG + LIFSA+Y+L + K +++ + +
Sbjct: 430 VGLPGTSGFVGEFMVIMGAIRVNFWIGAAAALTLIFSASYTLWMLKRVVWGRAPSASIAK 489
Query: 593 MIMISGNNLLSIYLGLELMSLTLCV 617
++ +SG ++++ L L+ L + +
Sbjct: 490 LVDLSGRE-IAMFASLALIVLAVGI 513
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 270 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 322
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + LL + Q D +++AYST++ +G +T+GL GV +I L
Sbjct: 323 AVIALSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 379
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L A S++++ +++ GG+ MP + +++ ++ VG P SGF
Sbjct: 380 VSYGFVAGAMLLCA-SVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGF 438
Query: 217 YSK 219
+
Sbjct: 439 VGE 441
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 270 KVPMWPVHTWLRDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 319
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q +F +++AYS++AHMG++
Sbjct: 320 FAPAVIA-------LSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTL---------- 362
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--ELDIFIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T E+ + G+ P
Sbjct: 363 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCASVLVDRTKQREMTAYGGVASAMPRF 418
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A+ ++F + G P T GF +F +
Sbjct: 419 AMFAVLFAMANVGLPGTSGFVGEFMV 444
>gi|14272192|emb|CAC39486.1| NADH dehydrogenase subunit 4 [Lunularia cruciata]
Length = 418
Score = 362 bits (928), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 265/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 4 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 64 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P F F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPIFPTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 156 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 214
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 215 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 274
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 275 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 306
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 68 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 184 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 239 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 288
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P I + F + P T F +F I F+ +
Sbjct: 289 HKTRIVKYYGGLVSTMPIFPTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|365855594|ref|ZP_09395639.1| NADH dehydrogenase subunit M [Acetobacteraceae bacterium AT-5844]
gi|363719021|gb|EHM02340.1| NADH dehydrogenase subunit M [Acetobacteraceae bacterium AT-5844]
Length = 503
Score = 362 bits (928), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 176/365 (48%), Positives = 270/365 (73%), Gaps = 2/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ F + Y LG+DG+S+ F+ L+ +T I IL S + ++ ++ EYM AFL+L +++G
Sbjct: 74 WMPGFGLAYHLGVDGISVLFVLLSTLLTPICILASWEAVQSRVREYMIAFLVLETMMVGM 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ++D ++FYIFFE LIP+F+IIG WGG R YAA K FLYTL+GSLLML++++ L+++
Sbjct: 134 FASMDMLMFYIFFEGVLIPMFLIIGVWGGQRRVYAAYKLFLYTLLGSLLMLLALLTLWFM 193
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ + +I +L I Q+WLF+ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA
Sbjct: 194 AGTT-SIPELFKLQIAPSLQVWLFLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGSVILA 252
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
++LK+G YG +RFSLP+ P A+ +F+ LI TLS++++IY SL+AM Q D+KKLIAYSS+
Sbjct: 253 GVLLKMGGYGFIRFSLPLLPVATEWFAPLIFTLSIVAVIYTSLVAMAQEDMKKLIAYSSV 312
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VTLGIF L + GAI QM+SH ++S A+F+ +G +Y+++ +R I+ +GG+ V
Sbjct: 313 AHMGIVTLGIFALNHQGLSGAIFQMLSHGVVSGALFLCVGVVYDRVHSREIARYGGVAKV 372
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P ++ F++F++A+ +LPGT+GF GEF++++ A + N + + +T +I A Y L L
Sbjct: 373 MPGYATVFMLFTMASVALPGTAGFPGEFLVLVGAWQANPWVALFAATGMILGACYMLWLY 432
Query: 584 KNIIF 588
+ ++F
Sbjct: 433 RRVLF 437
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ +E PT A ++I A ++ G + R S PL ++ + ++F
Sbjct: 226 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFIRFSLPLLPVATEWFAPLIFT 284
Query: 108 GAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+I A + L+ + Q D+K++IAYS+++ +G +T+G L + +IF +++H
Sbjct: 285 LSIVAVIYTSLVAMAQEDMKKLIAYSSVAHMGIVTLGIFALNHQGLSGAIFQMLSHGVVS 344
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H+++I GG+ K MP ++ ++ V P +GF
Sbjct: 345 GALFLCVG-VVYDRVHSREIARYGGVAKVMPGYATVFMLFTMASVALPGTAGF 396
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 113/250 (45%), Gaps = 19/250 (7%)
Query: 656 ITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIIT 715
+ GT + +F + I S+ L + K+ + P H W+PD + A +
Sbjct: 193 MAGTTSIPELFKL----QIAPSLQVWLFLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGS 248
Query: 716 LLLSTTP-KLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRM 773
++L+ K+ + I L LLP+ W ++ L+I ++I ++ A+ Q + K++
Sbjct: 249 VILAGVLLKMGGYGFIRFSL--PLLPVATEWFAPLIFTLSIVAVIYTSLVAMAQEDMKKL 306
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
IAYSS+AHMG++ I ++ + IF G+ + GA + + + +
Sbjct: 307 IAYSSVAHMGIVTLGIFALNHQGLSGAIFQMLSHGV---------VSGALFLCVGVVYDR 357
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ + E+ + G+ + P A + M+F + P T GF +F + ++ W+ L
Sbjct: 358 VH-SREIARYGGVAKVMPGYATVFMLFTMASVALPGTAGFPGEFLVLVGAWQANP-WVAL 415
Query: 894 LIIMCSLIGA 903
++GA
Sbjct: 416 FAATGMILGA 425
>gi|444921324|ref|ZP_21241161.1| NADH-quinone oxidoreductase subunit M [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507683|gb|ELV07858.1| NADH-quinone oxidoreductase subunit M [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 507
Score = 362 bits (928), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 199/384 (51%), Positives = 280/384 (72%), Gaps = 14/384 (3%)
Query: 223 KIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLII 281
K WI I Y LG+DGLS+ FI LT+F+T+++++ D I K +Y+ AFLI++GL+
Sbjct: 69 KQWIPTLGINYHLGVDGLSMPFILLTSFMTVVVVIAGWDVITYKRHQYLGAFLIMAGLMN 128
Query: 282 GAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY 341
G F A+D +LFY+FFEA LIP+F+IIG WGG NR AA+KFFLYT +GS+ +L+ +IYLY
Sbjct: 129 GVFAAMDSILFYVFFEAMLIPMFLIIGIWGGPNRVQAALKFFLYTFLGSIFLLVGIIYLY 188
Query: 342 YISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSV 400
SN + F+I ++ L ++ +Q WL + F FA+K+P+WP+HTWLP AHVEAPT GSV
Sbjct: 189 MQSNNTTFSIANFADLDLSLSQQKWLLLAFLAGFAVKVPMWPVHTWLPSAHVEAPTGGSV 248
Query: 401 ILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAY 460
ILAAI LK+G YG LRF LPI P+ +F+ +II +S+I+IIYIS +A+ Q D+KKLIAY
Sbjct: 249 ILAAITLKIGGYGFLRFMLPIVPEGIAFFAPMIIAMSIIAIIYISFVALAQKDMKKLIAY 308
Query: 461 SSIAHMGFVTLGIFM----------LTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
SSIAHMGFVTLG + +++IQG ++QMISH +S+AMF+SIG LY+++
Sbjct: 309 SSIAHMGFVTLGFVLPVAFLDAPMAANQMAIQGGMMQMISHGFVSAAMFLSIGVLYDRVH 368
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
+R I+++GG+IN +P F FFI F++AN LPGTSGFIGEF ++L++ + I + +T
Sbjct: 369 SREIADYGGVINSMPIFGAFFIFFAMANSGLPGTSGFIGEFWVLLASFHYGIYITIAVAT 428
Query: 571 ALIFSAAYSLCLSKNIIFVLGQMI 594
+LI SA Y+L L+K +I LG+ +
Sbjct: 429 SLILSAGYNLWLTKRVI--LGEAV 450
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 46 GAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-I 103
G K +P+HTWLP + +E PT S ++ A T+ G + M P+ + +
Sbjct: 221 GFAVKVPMWPVHTWLPSAHVEAPTGGSVILAAITLKIGGYGFLRFMLPIVPEGIAFFAPM 280
Query: 104 ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS-------------AYT 150
I+ + I ++ + + Q D+K++IAYS+++ +G++T+G + A
Sbjct: 281 IIAMSIIAIIYISFVALAQKDMKKLIAYSSIAHMGFVTLGFVLPVAFLDAPMAANQMAIQ 340
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
+ +++H F A +FLS G ++ + H+++I + GG+ MPI + ++ G
Sbjct: 341 GGMMQMISHGFVSAAMFLSIG-VLYDRVHSREIADYGGVINSMPIFGAFFIFFAMANSGL 399
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 400 PGTSGFIGE 408
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 128/268 (47%), Gaps = 26/268 (9%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--I 687
+AA+K+F+ L S F+L GI LY + + F++ +++ S+ LL+ +
Sbjct: 164 QAALKFFLYTFLGSIFLLVGIIYLYMQSN----NTTFSIANFADLDLSLSQQKWLLLAFL 219
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN--- 744
G + K+ + P H W+P + A +++L+ ++L + Y L + +LP+V
Sbjct: 220 AGFAVKVPMWPVHTWLPSAHVEAPTGGSVILAA---ITLKIGGYGFL-RFMLPIVPEGIA 275
Query: 745 -WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII------SIKTSHN 797
+ +++ ++I ++I + A+ Q + K++IAYSSIAHMG + + + N
Sbjct: 276 FFAPMIIAMSIIAIIYISFVALAQKDMKKLIAYSSIAHMGFVTLGFVLPVAFLDAPMAAN 335
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIM 857
+ I G+ +I++ F F I +L + ++ E+ + G+ P
Sbjct: 336 QMAI----QGGMMQMISHGFVSAAMFLSIGVLYDRVHSR--EIADYGGVINSMPIFGAFF 389
Query: 858 MIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
+ F + +G P T GF +F++ F
Sbjct: 390 IFFAMANSGLPGTSGFIGEFWVLLASFH 417
>gi|374092042|gb|AEY83685.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Oxymitra
incrassata]
Length = 437
Score = 362 bits (928), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 265/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIII WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIISVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I+ + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIISVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|430003217|emb|CCF19002.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M) [Rhizobium sp.]
Length = 503
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 183/369 (49%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S+ F+ LT F+ +L S ++K+L EYM AFL+L +
Sbjct: 68 EKSPWLGT-GISYHLGVDGISMLFVILTTFLMPFCVLASWHSVEKRLKEYMIAFLLLEVV 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG F +LD +LFY+FFEATLIP+F+IIG WGG +R YA+ KFFLYTL GS+LM+++++
Sbjct: 127 MIGVFVSLDIVLFYVFFEATLIPMFVIIGVWGGKDRVYASYKFFLYTLAGSVLMMLAIMA 186
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y+ + + +I+ + + Q WL++ F AFA+K+P+WP+HTWLPDAHV+APT GS
Sbjct: 187 MYWQAGTT-DIVELLKYNFPANLQTWLWLAAFAAFAVKMPMWPVHTWLPDAHVQAPTAGS 245
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA +MLKLG YG +R SL +FP AS YF+ + TLS+++IIY SL+AM+Q DIKKLIA
Sbjct: 246 VILAGVMLKLGGYGFIRISLAMFPLASDYFAPFVFTLSILAIIYTSLVAMMQDDIKKLIA 305
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHMGFVT+GIF +QGAI QM+SH ++S A+F+ +G +Y+++ TR I+ +GG
Sbjct: 306 YSSVAHMGFVTMGIFAANMQGVQGAIFQMLSHGIVSGALFLCVGVIYDRLHTREIAAYGG 365
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++N +P ++V F++F++AN LPGTSGF+GEF+ ++ + N + + +T +I SA Y+
Sbjct: 366 LVNNMPKYAVAFMVFTMANVGLPGTSGFVGEFLTVIGVFQVNTWVALFAATGVILSACYA 425
Query: 580 LCLSKNIIF 588
L L + +I+
Sbjct: 426 LWLYRRVIW 434
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A M+ G + R+S +F L++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVMLKLGGYGFIRISLAMFPLASDYFAPFVFT 281
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+I A + L+ ++Q+DIK++IAYS+++ +G++T+G+ + +IF +++H
Sbjct: 282 LSILAIIYTSLVAMMQDDIKKLIAYSSVAHMGFVTMGIFAANMQGVQGAIFQMLSHGIVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 GALFLCVG-VIYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 30/292 (10%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
K+ +++S K+F+ + S M+ I +Y GT ++ + N+ + +
Sbjct: 160 KDRVYASY---KFFLYTLAGSVLMMLAIMAMYWQAGTTDIVELLKYNFPANLQTWLWLAA 216
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPL 741
V K+ + P H W+PD + Q + +L KL + I L + PL
Sbjct: 217 FAAFAV----KMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRISL--AMFPL 270
Query: 742 VINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
++ + L+I ++I ++ A+ Q + K++IAYSS+AHMG + I +
Sbjct: 271 ASDYFAPFVFTLSILAIIYTSLVAMMQDDIKKLIAYSSVAHMGFVTMGIFAANMQGVQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
IF G+ + GA + + + + + T E+ + GL P A+ M+F
Sbjct: 331 IFQMLSHGI---------VSGALFLCVGVIYDRLH-TREIAAYGGLVNNMPKYAVAFMVF 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDC 912
+ G P T GF +F +F+ W+ L A G I+ C
Sbjct: 381 TMANVGLPGTSGFVGEFLTVIGVFQVNT-WVALF--------AATGVILSAC 423
>gi|229315902|ref|YP_002860128.1| NADH dehydrogenase subunit 4 [Micromonas sp. RCC299]
gi|226431187|gb|ACO55592.1| NADH dehydrogenase subunit 4 [Micromonas sp. RCC299]
Length = 488
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 178/367 (48%), Positives = 267/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGA 283
W+ +FN+ ++GIDG+SL+FI LT F+ + +L+ ++I K + EY AFLIL ++
Sbjct: 66 WLPFFNMNAYIGIDGISLFFIVLTTFLVPVCLLVGWVNISKHVKEYCLAFLILETCMLAV 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ L+P+F+IIG WG R AA +FFLYTL+GS+LML++++ +Y+
Sbjct: 126 FCMLDLLLFYVFFESVLLPMFLIIGVWGSRARKIRAAYQFFLYTLVGSVLMLLAILLIYF 185
Query: 343 -ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ +L + S + Q+ L++ FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 186 QVGTTDLQVLLVSEFS--ERRQLLLWLAFFASFAVKVPMVPLHIWLPEAHVEAPTAGSVI 243
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+AS YF+ LI T+S+I I+Y SL + QID+KK+IAYS
Sbjct: 244 LAGILLKLGTYGFLRFSIPLFPEASLYFTPLIYTMSIIGIVYASLTTLRQIDLKKIIAYS 303
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHMGFVT+G+F L ++GAI+ M+SH ++SA+F+ +G LY++ TRLI +GG++
Sbjct: 304 SVAHMGFVTIGLFSLNVQGVEGAILLMLSHGFVASALFLCVGTLYDRTHTRLIQYYGGLV 363
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+++P FS FF++F++ N SLPGTS F+GEF+I++ + N I L +T +I AYS+
Sbjct: 364 HIMPLFSFFFLVFTMGNLSLPGTSSFVGEFLILVGTFQTNTWIATLAATGMILGGAYSIW 423
Query: 582 LSKNIIF 588
L ++F
Sbjct: 424 LYNRVVF 430
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K PLH WLP++ +E PT A ++I A ++ G + R S PLF ++ + +++
Sbjct: 219 KVPMVPLHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPLFPEASLYFTPLIYT 277
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+I + L + Q D+K+IIAYS+++ +G++T+G L V +I +++H F
Sbjct: 278 MSIIGIVYASLTTLRQIDLKKIIAYSSVAHMGFVTIGLFSLNVQGVEGAILLMLSHGFVA 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLI---GLLSLVGAPFFSG 215
+ LFL G+ + + H + I+ GGL MP+ L+ G LSL G F G
Sbjct: 338 SALFLCVGT-LYDRTHTRLIQYYGGLVHIMPLFSFFFLVFTMGNLSLPGTSSFVG 391
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 128/294 (43%), Gaps = 24/294 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + L + ++I + AA ++F+ ++ S ML I ++Y GT
Sbjct: 130 DLLLFYVFFESVLLPMFLIIGVWGSRARKIRAAYQFFLYTLVGSVLMLLAILLIYFQVGT 189
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ V+ ++ + L L + K+ + P H+W+P+ + G+ I+
Sbjct: 190 TDLQ----VLLVSEFSERRQLLLWLAFFASFAVKVPMVPLHIWLPEAHVEAPTAGSVILA 245
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + ++ ++I ++ +++ + Q + K++I
Sbjct: 246 GILL----KLGTYGFL-RFSIPLFPEASLYFTPLIYTMSIIGIVYASLTTLRQIDLKKII 300
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHMG + + S+ + + ++++ F F + L + T
Sbjct: 301 AYSSVAHMGFVTIGLFSLNV--------QGVEGAILLMLSHGFVASALFLCVGTLYDRT- 351
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
T + + GL P + ++F P T F +F I F+T
Sbjct: 352 -HTRLIQYYGGLVHIMPLFSFFFLVFTMGNLSLPGTSSFVGEFLILVGTFQTNT 404
>gi|347736604|ref|ZP_08869199.1| NADH-quinone oxidoreductase chain M [Azospirillum amazonense Y2]
gi|346919863|gb|EGY01212.1| NADH-quinone oxidoreductase chain M [Azospirillum amazonense Y2]
Length = 566
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/380 (45%), Positives = 265/380 (69%), Gaps = 5/380 (1%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEY 269
P +GF ++ WI I Y GIDG+S+WF+ + F+T + +L S D I+K++ E+
Sbjct: 59 PSSAGFQLVEEHS-WIPALGIQYLRGIDGVSVWFVLASTFLTPVCVLASWDSIEKRVKEF 117
Query: 270 MSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMG 329
M + L+L +++G F ALD +LFYIFFE L+P+F++IG WGG R YAA KFF+YT +G
Sbjct: 118 MMSLLLLETMLVGMFTALDFILFYIFFEGVLLPMFLMIGVWGGPGRIYAAYKFFIYTFIG 177
Query: 330 SLLMLISMIYLY-YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLP 388
S+LML++++ +Y + ++ H + + +WL FF AFA+K P+WP HTWLP
Sbjct: 178 SVLMLLAIVAMYLQVGTMDMRVMLDHTFDPSMQKILWL--AFFAAFAVKTPMWPFHTWLP 235
Query: 389 DAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
AHVEAPT GSV+LA +MLK+G YGL+R +L + P S ++NL+ +S+++IIY SL+A
Sbjct: 236 FAHVEAPTAGSVMLAGVMLKMGGYGLIRANLQMLPIGSATYTNLVFVMSVVAIIYTSLVA 295
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQ 508
+ Q D+KK+IAYSS+AHMG+V++GIF + GA+ QM+SH ++S+A+F+ IG +YN+
Sbjct: 296 LAQTDMKKMIAYSSVAHMGYVSMGIFAANAQGLDGAMFQMLSHTVVSAALFLCIGVVYNR 355
Query: 509 MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLT 568
+ TR I+ +GG+ + +P ++V F++F LA+ LPGTSGF+GEF+ +L A + N +G+
Sbjct: 356 LHTREIARYGGMAHNMPKYAVVFMLFMLASVGLPGTSGFVGEFLSMLGAYEANTWVGLFA 415
Query: 569 STALIFSAAYSLCLSKNIIF 588
ST L+F AAY L L + + +
Sbjct: 416 STGLVFGAAYMLLLYRKLFY 435
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 50 KSAQFPLHTWLP-DSMEGPTPASALIHAATMVTAGIFMITR----MSPLFELSNTALSII 104
K+ +P HTWLP +E PT S ++ A M+ G + + R M P+ + T L +
Sbjct: 224 KTPMWPFHTWLPFAHVEAPTAGSVML-AGVMLKMGGYGLIRANLQMLPIGSATYTNLVFV 282
Query: 105 LFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAF 161
+ + AI + L+ + Q D+K++IAYS+++ +GY+++G+ ++F +++H
Sbjct: 283 MSVVAI--IYTSLVALAQTDMKKMIAYSSVAHMGYVSMGIFAANAQGLDGAMFQMLSHTV 340
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G ++ N H ++I GG+ MP + ++ +L+ VG P SGF +
Sbjct: 341 VSAALFLCIG-VVYNRLHTREIARYGGMAHNMPKYAVVFMLFMLASVGLPGTSGFVGE 397
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 121/258 (46%), Gaps = 18/258 (6%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+FI + S ML I +Y GT++++ + + + + S+ + L
Sbjct: 166 AAYKFFIYTFIGSVLMLLAIVAMYLQVGTMDMRVMLD----HTFDPSMQKILWLAFFAAF 221
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPL-VINWQKI 748
+ K + PFH W+P + A +++L+ K+ + +I L +LP+ + +
Sbjct: 222 AVKTPMWPFHTWLPFAHVEAPTAGSVMLAGVMLKMGGYGLIRANL--QMLPIGSATYTNL 279
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ ++++ ++I ++ A+ Q + K+MIAYSS+AHMG + I + D
Sbjct: 280 VFVMSVVAIIYTSLVALAQTDMKKMIAYSSVAHMGYVSMGIFAANA--------QGLDGA 331
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
+F ++++ F I ++ N T E+ + G+ P A++ M+FM + G P
Sbjct: 332 MFQMLSHTVVSAALFLCIGVVYNRL--HTREIARYGGMAHNMPKYAVVFMLFMLASVGLP 389
Query: 869 PTIGFYAKFFIFEKIFET 886
T GF +F +E
Sbjct: 390 GTSGFVGEFLSMLGAYEA 407
>gi|374092056|gb|AEY83692.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Frullania
tamarisci]
Length = 430
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 264/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 24 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 83
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 84 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 143
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 144 QTGTTDLQILPTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 201
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 202 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 261
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 262 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 321
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I + A + N + L + +I AAYSL
Sbjct: 322 STMPIFSTIFLFFTLANISLPGTSSFIGEFLIFVGAFQRNSLVATLAALGMILGAAYSLW 381
Query: 582 LSKNIIF 588
L ++F
Sbjct: 382 LYNRVVF 388
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 177 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 235
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 236 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 295
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 296 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 326
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 88 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 147
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 148 TDLQ----ILPTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 203
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 204 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 258
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 259 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 308
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F IF F+ +
Sbjct: 309 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANISLPGTSSFIGEFLIFVGAFQRNSL 363
>gi|412994387|emb|CCO13963.1| NADH dehydrogenase subunit 4 [Bathycoccus prasinos]
Length = 489
Score = 361 bits (926), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/367 (47%), Positives = 265/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ + N+++++GIDG+SL+FI LT F+ +L+ D ++K + EY AFL L ++
Sbjct: 67 WLPFLNMHFYIGIDGISLFFILLTTFLVPFCLLVGWDSVQKNVKEYFIAFLFLESFMLAV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ L+P+F+IIG WG R AA +FFLYTL+GSL ML++++ +Y+
Sbjct: 127 FCMLDLLLFYVFFESVLLPMFLIIGVWGSRERKIRAAYQFFLYTLIGSLFMLLAILLIYF 186
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + +L + S+ + Q+ L+ FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 187 QTGTTDLQVLFVSEFSLQR--QLLLWFAFFASFAVKVPMIPVHIWLPEAHVEAPTSGSVI 244
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA ++LKLG YG +R+S+P+FP+AS YF+ LI TLS+I +IY SL + QID+KK+IAYS
Sbjct: 245 LAGVLLKLGTYGFVRYSIPLFPEASVYFTPLIYTLSIIGVIYASLTTLRQIDLKKIIAYS 304
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHMGFVTLG+F L I+GA+ M+SH ++SA+F+ IG LY++ TRL+ +GG++
Sbjct: 305 SVAHMGFVTLGLFSLNIQGIEGALFLMLSHGFVASALFLCIGVLYDRTHTRLVKYYGGLV 364
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+V+P FSVFF+IF++ N SLPGTS F+GEF+I++ + N + +T +I AYS+
Sbjct: 365 HVMPLFSVFFLIFTMGNLSLPGTSSFVGEFLILVGVFQTNPFVATFAATGMILGGAYSIW 424
Query: 582 LSKNIIF 588
L ++F
Sbjct: 425 LYNRVVF 431
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT S ++ A ++ G + R S PLF ++ + +++
Sbjct: 219 VKVPMIPVHIWLPEAHVEAPTSGSVIL-AGVLLKLGTYGFVRYSIPLFPEASVYFTPLIY 277
Query: 107 ----IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTH 159
IG I A L + Q D+K+IIAYS+++ +G++T+G L + ++F +++H
Sbjct: 278 TLSIIGVIYA---SLTTLRQIDLKKIIAYSSVAHMGFVTLGLFSLNIQGIEGALFLMLSH 334
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLI---GLLSLVGAPFFSG 215
F + LFL G ++ + H + ++ GGL MP+ + LI G LSL G F G
Sbjct: 335 GFVASALFLCIG-VLYDRTHTRLVKYYGGLVHVMPLFSVFFLIFTMGNLSLPGTSSFVG 392
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 24/294 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + L + ++I + AA ++F+ ++ S FML I ++Y TGT
Sbjct: 131 DLLLFYVFFESVLLPMFLIIGVWGSRERKIRAAYQFFLYTLIGSLFMLLAILLIYFQTGT 190
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ +F ++ + L + K+ + P H+W+P+ + G+ I+
Sbjct: 191 TDLQVLF----VSEFSLQRQLLLWFAFFASFAVKVPMIPVHIWLPEAHVEAPTSGSVILA 246
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + ++ L+I +I +++ + Q + K++I
Sbjct: 247 GVLL----KLGTYGFV-RYSIPLFPEASVYFTPLIYTLSIIGVIYASLTTLRQIDLKKII 301
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHMG + + S+ + LF ++++ F F I +L + T
Sbjct: 302 AYSSVAHMGFVTLGLFSLNI--------QGIEGALFLMLSHGFVASALFLCIGVLYDRT- 352
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
T + + GL P ++ +IF P T F +F I +F+T
Sbjct: 353 -HTRLVKYYGGLVHVMPLFSVFFLIFTMGNLSLPGTSSFVGEFLILVGVFQTNP 405
>gi|404498191|ref|YP_006722297.1| NADH dehydrogenase I subunit M [Geobacter metallireducens GS-15]
gi|418065923|ref|ZP_12703292.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Geobacter metallireducens RCH3]
gi|78195788|gb|ABB33555.1| NADH dehydrogenase I, M subunit [Geobacter metallireducens GS-15]
gi|373561430|gb|EHP87665.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Geobacter metallireducens RCH3]
Length = 519
Score = 361 bits (926), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/392 (45%), Positives = 274/392 (69%), Gaps = 10/392 (2%)
Query: 207 LVGAPFFSGFYSKDK-----KKIWIDY--FNIYYFLGIDGLSLWFIPLTAFITLIIILIS 259
+V P +GF S + K WI + + Y + IDG+SLW + LT FI I IL +
Sbjct: 45 VVSLPLVTGFQSNAEFQFVEKVPWIAAGPYQMNYHVAIDGISLWLVILTTFIVPIAILST 104
Query: 260 LD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYA 318
++ K+ EYM L+L ++GAF +LD LFYIF+E LIP++ IIG WGG N+ YA
Sbjct: 105 WTAVENKVKEYMICLLLLEVGMLGAFVSLDLFLFYIFWEVMLIPMYFIIGIWGGKNKIYA 164
Query: 319 AIKFFLYTLMGSLLMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLFITFFIAFAIK 377
A+KFF+YT++GSLLMLI+++ LY+ F++L ++ L++ Q W+F+ F +AFAIK
Sbjct: 165 ALKFFIYTMVGSLLMLIALVVLYFKGGAGDFSVLRFYDLALDPATQTWMFLAFALAFAIK 224
Query: 378 IPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLS 437
+P++P+HTWLPDAH EAPT GSVILAA++LK+G YG +RF++P+FPDA+ F+ L LS
Sbjct: 225 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFVRFAMPLFPDATAQFTPLFAVLS 284
Query: 438 LISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSA 497
+I I+Y +L+AMVQ D+KKL+AYSS+AH+G+V LG+F L + + G +IQM++H + + A
Sbjct: 285 VIGIVYAALVAMVQEDVKKLVAYSSVAHLGYVMLGVFALNQQGLSGGMIQMLNHGVSTGA 344
Query: 498 MFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+F+ +GF+Y + TRLI++FGG+ +P F+ F+I +L++ LPGT+GF+GEF+I++ A
Sbjct: 345 LFLIVGFIYERRHTRLITDFGGLAKQMPVFATIFMIVTLSSIGLPGTNGFVGEFLILIGA 404
Query: 558 VKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
+ V+ ++ +I SA Y L + + ++F
Sbjct: 405 YESELRWYAVIGTSGVILSAVYMLWMFQRVMF 436
Score = 87.8 bits (216), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 10/200 (5%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
YD L FL + K FPLHTWLPD+ E PT A ++I AA ++ G +
Sbjct: 201 YDLALDPATQTWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPT-AGSVILAAVLLKMGTY 259
Query: 86 MITRMS-PLFELSNTALSIILF--IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
R + PLF TA LF + I + L+ ++Q D+K+++AYS+++ LGY+ +
Sbjct: 260 GFVRFAMPLFP-DATAQFTPLFAVLSVIGIVYAALVAMVQEDVKKLVAYSSVAHLGYVML 318
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G L + + ++ H LFL G I +H + I + GGL K MP+
Sbjct: 319 GVFALNQQGLSGGMIQMLNHGVSTGALFLIVG-FIYERRHTRLITDFGGLAKQMPVFATI 377
Query: 200 SLIGLLSLVGAPFFSGFYSK 219
+I LS +G P +GF +
Sbjct: 378 FMIVTLSSIGLPGTNGFVGE 397
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 150/323 (46%), Gaps = 36/323 (11%)
Query: 578 YSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKY 635
Y +CL + +LG + + +L Y+ E+M + + +I KN I+ AA+K+
Sbjct: 115 YMICLLLLEVGMLGAFVSL---DLFLFYIFWEVMLIPMYFIIGIWGGKNKIY---AALKF 168
Query: 636 FILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--K 693
FI ++ S ML + +LY G + F+V++ ++ + + + L+F K
Sbjct: 169 FIYTMVGSLLMLIALVVLYFKGGAGD----FSVLRFYDLALDPATQTWMFLAFALAFAIK 224
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLIL 752
+ + P H W+PD + A +++L+ K+ + + R + + + +L
Sbjct: 225 VPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFV-RFAMPLFPDATAQFTPLFAVL 283
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT---SHNNLIIFNSCDS-- 807
++ ++ + A+ Q + K+++AYSS+AH+G ++ + ++ S + + N S
Sbjct: 284 SVIGIVYAALVAMVQEDVKKLVAYSSVAHLGYVMLGVFALNQQGLSGGMIQMLNHGVSTG 343
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
LF I+ +I+ + +T TD F GL ++ P A I MI S G
Sbjct: 344 ALFLIVGFIYE-----------RRHTRLITD----FGGLAKQMPVFATIFMIVTLSSIGL 388
Query: 868 PPTIGFYAKFFIFEKIFETQKIW 890
P T GF +F I +E++ W
Sbjct: 389 PGTNGFVGEFLILIGAYESELRW 411
>gi|110225643|ref|YP_665649.1| NADH dehydrogenase subunit 4 [Nephroselmis olivacea]
gi|6066158|gb|AAF03176.1|AF110138_8 NADH dehydrogenase subunit 4 [Nephroselmis olivacea]
Length = 500
Score = 361 bits (926), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 183/370 (49%), Positives = 268/370 (72%), Gaps = 3/370 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
K W+ N++ ++GIDG+SL+F+ L+ F+ I IL+ + I+ + EY+ AFLIL
Sbjct: 75 TKITWLPISNLHIYMGIDGISLFFVILSTFLVPICILVGWVSIQTYVREYVIAFLILESC 134
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMI 338
+I FC LD +LFY+FFE+ LIP+F+IIG WG R AA +FFLYTL GS+LML+++I
Sbjct: 135 MIAVFCMLDLLLFYVFFESVLIPMFLIIGIWGSRERKIRAAYQFFLYTLFGSVLMLLAII 194
Query: 339 YLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
+Y+ + + ++ + S ++ QI L++ FF +FA+K+P+ P+H WLP+AHVEAPT G
Sbjct: 195 LIYFQTGTT-DLQVLYTTSFSEKRQILLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTSG 253
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILA ++LKLG YG LRFS+P+FP+AS YF+ LI T+S+I++IY SL + QID+KK+I
Sbjct: 254 SVILAGVLLKLGTYGFLRFSIPMFPEASLYFTPLIYTMSIIAVIYASLTTIRQIDLKKVI 313
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRLI +G
Sbjct: 314 AYSSVAHMAFVTIGLFSLNVQGIEGSILLMLSHGLVSSALFLCVGCLYDRHKTRLIPYYG 373
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
++ +P FSV F+ F+L N SLPGTS F+GEF+I++ A + N I L +T ++ AAY
Sbjct: 374 ACVHTMPIFSVIFLFFTLGNLSLPGTSSFVGEFLILVGAFQNNTLITTLAATGMVLGAAY 433
Query: 579 SLCLSKNIIF 588
SL L ++F
Sbjct: 434 SLWLYNRVVF 443
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT S ++ A ++ G + R S P+F ++ + +++
Sbjct: 231 VKVPMVPVHIWLPEAHVEAPTSGSVIL-AGVLLKLGTYGFLRFSIPMFPEASLYFTPLIY 289
Query: 107 IGAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+I A + L I Q D+K++IAYS+++ + ++T+G L V SI +++H
Sbjct: 290 TMSIIAVIYASLTTIRQIDLKKVIAYSSVAHMAFVTIGLFSLNVQGIEGSILLMLSHGLV 349
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL---IGLLSLVGAPFFSG 215
+ LFL G + K + I G MPI + L +G LSL G F G
Sbjct: 350 SSALFLCVGCLYDRHK-TRLIPYYGACVHTMPIFSVIFLFFTLGNLSLPGTSSFVG 404
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA ++F+ + S ML I ++Y TGT +LQ ++ + + L L
Sbjct: 173 RAAYQFFLYTLFGSVLMLLAIILIYFQTGTTDLQVLYT----TSFSEKRQILLWLAFFAS 228
Query: 690 LSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H+W+P+ + G+ I+ +LL KL + + R I +
Sbjct: 229 FAVKVPMVPVHIWLPEAHVEAPTSGSVILAGVLL----KLGTYGFL-RFSIPMFPEASLY 283
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTS 795
+ ++ ++I ++I +++ I Q + K++IAYSS+AHM + + S+
Sbjct: 284 FTPLIYTMSIIAVIYASLTTIRQIDLKKVIAYSSVAHMAFVTIGLFSLNVQ 334
>gi|161524381|ref|YP_001579393.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Burkholderia multivorans ATCC 17616]
gi|189350864|ref|YP_001946492.1| NADH dehydrogenase I subunit M [Burkholderia multivorans ATCC
17616]
gi|160341810|gb|ABX14896.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia multivorans ATCC 17616]
gi|189334886|dbj|BAG43956.1| NADH dehydrogenase I chain M [Burkholderia multivorans ATCC 17616]
Length = 509
Score = 361 bits (926), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 300/442 (67%), Gaps = 21/442 (4%)
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
F ++ A + +LF G+ ++ +Q ++ + I I ++ GL ++ AP
Sbjct: 4 FPFLSLAIWAPILF---GACLLRAGSDQHLQ------RTRLIALIGAIAGLATV--APIV 52
Query: 214 SGFYSKDKKKIWID------YFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKL 266
+GF +++ F + G+DG SLW + LTAF TL++++ S + ++
Sbjct: 53 AGFDPHSAAMQFVESRNGLSAFGAGWRTGVDGASLWLVVLTAFTTLVVVVASWQAVTVRV 112
Query: 267 AEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYT 326
A+Y ++FLILSGL+IG F A DG+LF+IFFEATLIP++++IGTWG +R YAA+KFF +
Sbjct: 113 AQYYASFLILSGLMIGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFIS 172
Query: 327 LMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
GSLL+L++M+YLY S+ +F++ +W L + Q+ +F+ FF AFA+K+P+WP+HTW
Sbjct: 173 FAGSLLLLMAMLYLYAKSH-TFDMAAWRTLQLGLAPQLLVFLGFFAAFAVKVPMWPVHTW 231
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
L D + + PT +++LA MLKLG YG LRF+LPI PDAS++F+ +I LSL +I+Y SL
Sbjct: 232 LRDVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASL 289
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A+ Q D KL+AYS++AHMG VTLG+F+ +I ++GAI+Q++S+ ++ AM + L
Sbjct: 290 LALAQTDFGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCASVLV 349
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++ K R ++ +GG+ + +P F++F ++F++AN LPGTSGF+GEFM+I+ A++ NF IG
Sbjct: 350 DRTKQREMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGA 409
Query: 567 LTSTALIFSAAYSLCLSKNIIF 588
+ LIFSA+Y+L + K +++
Sbjct: 410 AAALTLIFSASYTLWMLKRVVW 431
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 24/207 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L + L FL K +P+HTWL D +GPT A+ ++ M+ G
Sbjct: 198 WRTLQLGLAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGG 254
Query: 85 FMITRMSPLFELSNTALSIILFIGAITAF------FMGLLGIIQNDIKRIIAYSTLSQLG 138
+ R F L T + F A+ A + LL + Q D +++AYST++ +G
Sbjct: 255 YGFLR----FALPITPDASHFFAPAVIALSLFAIVYASLLALAQTDFGKLLAYSTVAHMG 310
Query: 139 YMTVGL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
+T+GL GV +I L+++ F + L A S++++ +++ GG+
Sbjct: 311 IVTLGLFLFNRIGVEG---AIVQLVSYGFVAGAMLLCA-SVLVDRTKQREMTAYGGVASA 366
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK 219
MP + +++ ++ VG P SGF +
Sbjct: 367 MPRFAMFAVLFAMANVGLPGTSGFVGE 393
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 222 KVPMWPVHTWLRDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 271
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q +F +++AYS++AHMG++
Sbjct: 272 FAPAVIA-------LSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTL---------- 314
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--ELDIFIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T E+ + G+ P
Sbjct: 315 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCASVLVDRTKQREMTAYGGVASAMPRF 370
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A+ ++F + G P T GF +F +
Sbjct: 371 AMFAVLFAMANVGLPGTSGFVGEFMV 396
>gi|328775235|gb|AEB40013.1| NADH dehydrogenase subunit 4 [Funaria hygrometrica]
Length = 495
Score = 360 bits (925), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/367 (50%), Positives = 264/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+ I IL+ IK EYM AFLI +I
Sbjct: 74 WLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++++++
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFF 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+ AN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPMFSTIFLFFTSANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNIIF 588
L +IF
Sbjct: 432 LYNRVIF 438
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G ++ + + ++ GGL MP+
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVKYYGGLVSTMPM 376
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +G +L +
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVG------VLYDR-- 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 359 HKTRLVKYYGGLVSTMPMFSTIFLFFTSANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|418936607|ref|ZP_13490314.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. PDO1-076]
gi|375056736|gb|EHS52904.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. PDO1-076]
Length = 503
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 196/409 (47%), Positives = 288/409 (70%), Gaps = 13/409 (3%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
+GF +K W+ I Y +G+DG+S+ F+ LT + IL S + ++K+L EYM A
Sbjct: 62 TGFQMVEKHD-WLGT-GIAYHVGVDGISMLFVVLTTLLMPFCILASWNSVQKRLKEYMIA 119
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
FL+L L+IG F +LD +LFY+FFEA LIP+FIIIG WGG +R YA+ KFFLYTL+GS+L
Sbjct: 120 FLLLETLMIGVFVSLDIVLFYVFFEAGLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVL 179
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
ML++++ +Y+ + + +I Q WL++ FF +FA+K+P+WP+HTWLPDAHV
Sbjct: 180 MLLAIMAMYWDAGTT-DISQLLAHEFPPQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHV 238
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
+APT GS+ILA I+LKLG YGLLRFS+P+FP AS YF+ L+ TLS+I+IIY SL+AM+Q
Sbjct: 239 QAPTAGSMILAGILLKLGGYGLLRFSVPMFPLASDYFAPLVFTLSVIAIIYTSLVAMMQD 298
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KK+IAYSS+AHMG+VT+G F IQGAI QMISH +S+A+F +G +Y+++ TR
Sbjct: 299 DMKKVIAYSSVAHMGYVTMGTFAANAQGIQGAIFQMISHGFVSAALFFCVGVIYDRLHTR 358
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG+ +P ++V F++F++AN LPGTSGF+GEF+ ++ + N + + +T +
Sbjct: 359 EITAYGGLATNMPKYAVAFMVFTMANVGLPGTSGFVGEFLTLIGVFRANTWVALFAATGV 418
Query: 573 IFSAAYSLCLSKNIIF------VLGQMIMISGNNLLSIYLGLELMSLTL 615
I SA YSL L + ++F + M+ +SG L +Y L++LT+
Sbjct: 419 ILSAGYSLWLYRRVVFGALEKESVKAMLDLSGREKLILY---PLIALTI 464
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S P+F L++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVQAPT-AGSMILAGILLKLGGYGLLRFSVPMFPLASDYFAPLVFT 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-LGVSAYTV--SIFHLMTHAFFK 163
+ I + L+ ++Q+D+K++IAYS+++ +GY+T+G +A + +IF +++H F
Sbjct: 282 LSVIAIIYTSLVAMMQDDMKKVIAYSSVAHMGYVTMGTFAANAQGIQGAIFQMISHGFVS 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK---- 219
A LF G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 342 AALFFCVG-VIYDRLHTREITAYGGLATNMPKYAVAFMVFTMANVGLPGTSGFVGEFLTL 400
Query: 220 ---DKKKIWIDYFNIYYFLGIDGLSLW 243
+ W+ F + G SLW
Sbjct: 401 IGVFRANTWVALFAATGVILSAGYSLW 427
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 20/272 (7%)
Query: 623 KNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS 682
K+ +++S K+F+ +L S ML I +Y GT ++ + + +
Sbjct: 160 KDRVYASY---KFFLYTLLGSVLMLLAIMAMYWDAGTTDISQLLA----HEFPPQMQTWL 212
Query: 683 LLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV 742
L + K+ + P H W+PD + A +++L+ + R + + PL
Sbjct: 213 WLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSMILAGILLKLGGYGLLRFSVP-MFPLA 271
Query: 743 INW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLII 801
++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG +++ T N
Sbjct: 272 SDYFAPLVFTLSVIAIIYTSLVAMMQDDMKKVIAYSSVAHMGY-----VTMGTFAANA-- 324
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+F +I++ F F + ++ + T E+ + GL P A+ M+F
Sbjct: 325 -QGIQGAIFQMISHGFVSAALFFCVGVIYDRL--HTREITAYGGLATNMPKYAVAFMVFT 381
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ G P T GF +F +F W+ L
Sbjct: 382 MANVGLPGTSGFVGEFLTLIGVFRANT-WVAL 412
>gi|374092058|gb|AEY83693.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Lejeunea
cavifolia]
Length = 437
Score = 360 bits (923), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 264/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILPTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYVLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGE +I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGELLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 IGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ ++ A + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 VLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 97/198 (48%), Gaps = 14/198 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILPTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + +L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYVLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISI 792
AYSS+AHM + + S+
Sbjct: 266 AYSSVAHMNFVTIGMFSL 283
>gi|374092120|gb|AEY83724.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Andreaea
nivalis]
Length = 418
Score = 360 bits (923), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 187/367 (50%), Positives = 263/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT + I IL+ IK EYM AFLI +I
Sbjct: 4 WLPYSNINFYIGIDGISLFFVILTTLLIPIRILVGWSSIKSYKKEYMIAFLICESFMIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++++++
Sbjct: 64 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSAIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L +IF
Sbjct: 362 LYNRVIF 368
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 156 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 214
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ AI + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 215 TLSAIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 274
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G ++ + + ++ GGL MP+
Sbjct: 275 SSALFLCVG-VLYDRHKTRLVKYYGGLVSTMPM 306
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 68 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L+ ++I +++ I Q + K++I
Sbjct: 184 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSAIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +G +L +
Sbjct: 239 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVG------VLYDR-- 288
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 289 HKTRLVKYYGGLVSTMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|91208857|ref|YP_539018.1| NADH dehydrogenase subunit 4 [Physcomitrella patens]
gi|90991397|dbj|BAE93089.1| NADH dehydrogenase subunit 4 (mitochondrion) [Physcomitrella
patens]
Length = 495
Score = 359 bits (922), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 187/367 (50%), Positives = 264/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+S +F+ LT F+ I IL+ IK EYM AFLIL +I
Sbjct: 74 WLPYSNINFYIGIDGISSFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLILESFMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++++++
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFF 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMIPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLXFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNIIF 588
L +IF
Sbjct: 432 LYNRVIF 438
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMIPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLXFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G ++ + + ++ GGL MP+
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVKYYGGLVSTMPM 376
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 149/347 (42%), Gaps = 27/347 (7%)
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLG 607
I F ++L+ CI V S+ + Y + F++ M+ +LL Y+
Sbjct: 89 ISSFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLILESFMIAVFCML---DLLLFYVF 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 FESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTP 722
++ + L + S K+ + P H+W+P+ + G+ I+ +LL
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFSVKVPMIPVHIWLPEAHVEAPTAGSVILAGILL---- 257
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
KL + + R I + + + L++ ++I +++ I Q + K++IAYSS+AHM
Sbjct: 258 KLGTYGFL-RFSIPMFPEATLXFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHM 316
Query: 783 GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI 842
+ + S+ I GL + + +F +G +L + +KT +
Sbjct: 317 NFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVG------VLYDR--HKTRLVKY 366
Query: 843 FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ GL P + I + F + P T F +F I F+ +
Sbjct: 367 YGGLVSTMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|95928434|ref|ZP_01311182.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Desulfuromonas acetoxidans DSM 684]
gi|95135705|gb|EAT17356.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Desulfuromonas acetoxidans DSM 684]
Length = 528
Score = 359 bits (922), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 192/420 (45%), Positives = 286/420 (68%), Gaps = 16/420 (3%)
Query: 184 RNMGGLYK--YMPITCITSLIGLLSLVGAPFF--SGFYSKDKKKIWI---DYFNIYYFLG 236
+N GGL K + T IT +I L L P F SG + WI +YF + Y +G
Sbjct: 25 KNNGGLLKGATLVFTLITFVISL-PLALDPVFKTSGGMHYTEFAEWISVTNYFQMNYSVG 83
Query: 237 IDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIF 295
IDG+SLW + LT FI I +L + + K + YM+ L+L ++GAF ALD LFYIF
Sbjct: 84 IDGISLWLVMLTTFIMPIAVLSTWQAVTKNVKGYMALMLLLETAMLGAFIALDLFLFYIF 143
Query: 296 FEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS------FN 349
+E LIP++ +IG WGG+NR YAA+KFF+YT +GSLLML++++++YY + S F+
Sbjct: 144 WELMLIPMYFMIGIWGGANRIYAAVKFFIYTAVGSLLMLVAILFIYYAAVNSGMDISGFS 203
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
I ++ LS+ Q WLF+ F +FAIK+P++P+HTWLPDAH EAPT GSVILAA+MLK+
Sbjct: 204 IADFYNLSLDPALQKWLFLAFAFSFAIKVPMFPVHTWLPDAHTEAPTAGSVILAAVMLKM 263
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YG +RF++P+FP+A+ F + L++I I+Y +L+AM+Q D+KKL+AYSS++H+GFV
Sbjct: 264 GTYGYVRFAMPLFPEATQTFLPYMTALAVIGIVYGALVAMMQKDVKKLVAYSSVSHLGFV 323
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
LGIF L + + GA++QMI+H + + A+F+ +GF+Y + TRLIS FGG+ +P F+V
Sbjct: 324 MLGIFALNTVGVSGAVLQMINHGISTGALFLIVGFIYERRHTRLISEFGGLSKQMPVFAV 383
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
F+I +L++ LP T+GF+GEFMI+L A + V+ ++ +I +A Y L + + ++F
Sbjct: 384 IFMIVTLSSIGLPATNGFVGEFMILLGAFQSELRWFAVVATSGVILAAVYMLWMFQRVMF 443
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K FP+HTWLPD+ E PT A ++I AA M+ G + R + PLF E + T L +
Sbjct: 231 KVPMFPVHTWLPDAHTEAPT-AGSVILAAVMLKMGTYGYVRFAMPLFPEATQTFLPYMTA 289
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ ++Q D+K+++AYS++S LG++ +G+ GVS ++ ++ H
Sbjct: 290 LAVIGIVYGALVAMMQKDVKKLVAYSSVSHLGFVMLGIFALNTVGVSG---AVLQMINHG 346
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I +H + I GGL K MP+ + +I LS +G P +GF +
Sbjct: 347 ISTGALFLIVG-FIYERRHTRLISEFGGLSKQMPVFAVIFMIVTLSSIGLPATNGFVGE 404
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 38/306 (12%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILY--G 655
+L Y+ ELM + + +I N I+ AA+K+FI + S ML I +Y
Sbjct: 136 DLFLFYIFWELMLIPMYFMIGIWGGANRIY---AAVKFFIYTAVGSLLMLVAILFIYYAA 192
Query: 656 ITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASII 713
+ +++ F++ N++ L + SF K+ + P H W+PD + A
Sbjct: 193 VNSGMDISG-FSIADFYNLSLDPALQKWLFLAFAFSFAIKVPMFPVHTWLPDAHTEAPTA 251
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILL----ILAIFSLIIGNVSAITQYN 769
+++L+ L + Y ++ +PL + L LA+ ++ G + A+ Q +
Sbjct: 252 GSVILAAV-MLKMGTYGY---VRFAMPLFPEATQTFLPYMTALAVIGIVYGALVAMMQKD 307
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG-----LFYIITYIFAILGAFG 824
K+++AYSS++H+G ++ I ++ T + + + G LF I+ +I+
Sbjct: 308 VKKLVAYSSVSHLGFVMLGIFALNTVGVSGAVLQMINHGISTGALFLIVGFIY------- 360
Query: 825 VIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
T + F GL ++ P A+I MI S G P T GF +F I F
Sbjct: 361 --------ERRHTRLISEFGGLSKQMPVFAVIFMIVTLSSIGLPATNGFVGEFMILLGAF 412
Query: 885 ETQKIW 890
+++ W
Sbjct: 413 QSELRW 418
>gi|221198376|ref|ZP_03571422.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit
m) (ndh-1 subunit m) [Burkholderia multivorans CGD2M]
gi|221208947|ref|ZP_03581944.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit
m) (ndh-1 subunit m) [Burkholderia multivorans CGD2]
gi|221171230|gb|EEE03680.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit
m) (ndh-1 subunit m) [Burkholderia multivorans CGD2]
gi|221182308|gb|EEE14709.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit
m) (ndh-1 subunit m) [Burkholderia multivorans CGD2M]
Length = 557
Score = 359 bits (922), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 185/445 (41%), Positives = 305/445 (68%), Gaps = 19/445 (4%)
Query: 188 GLYKYMPITCITSLIGLLSLVGA--PFFSGFYSKDKKKIWID------YFNIYYFLGIDG 239
G +++ T + +LIG ++ + A P +GF +++ F + G+DG
Sbjct: 73 GSDQHLQRTRLIALIGAIAGLAAVAPIVAGFDPHSAAMQFVENRNGLSAFGAGWRTGVDG 132
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
SLW + LTAF TL++++ S + ++A+Y ++FLILSGL+IG F A DG+LF+IFFEA
Sbjct: 133 ASLWLVVLTAFTTLVVVVASWQAVTVRVAQYYASFLILSGLMIGVFVAQDGLLFFIFFEA 192
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
TLIP++++IGTWG +R YAA+KFF + GSLL+L++M+YLY S+ +F++ +W L +
Sbjct: 193 TLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLYAKSH-TFDMAAWRTLQL 251
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+
Sbjct: 252 GFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFA 309
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LPI PDAS++F+ +I LS+ +I+Y SL+A+ Q D KL+AYS++AHMG VTLG+F+ +
Sbjct: 310 LPITPDASHFFAPAVIALSVFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNR 369
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
I ++GAI+Q++S+ ++ AM + L ++ K R ++ +GG+ + +P F++F ++F++AN
Sbjct: 370 IGVEGAIVQLVSYGFVAGAMLLCASVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMAN 429
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF------VLGQ 592
LPGTSGF+GEFM+I+ A++ NF IG + LIFSA+Y+L + K +++ + +
Sbjct: 430 VGLPGTSGFVGEFMVIMGAIRVNFWIGAAAALTLIFSASYTLWMLKRVVWGRAPSASIAK 489
Query: 593 MIMISGNNLLSIYLGLELMSLTLCV 617
++ +SG ++++ L L+ L + +
Sbjct: 490 LVDLSGRE-IAMFASLALIVLAVGI 513
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 270 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 322
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + LL + Q D +++AYST++ +G +T+GL GV +I L
Sbjct: 323 AVIALSVFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 379
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L A S++++ +++ GG+ MP + +++ ++ VG P SGF
Sbjct: 380 VSYGFVAGAMLLCA-SVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGF 438
Query: 217 YSK 219
+
Sbjct: 439 VGE 441
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 270 KVPMWPVHTWLRDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 319
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q +F +++AYS++AHMG++
Sbjct: 320 FAPAVIA-------LSVFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTL---------- 362
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--ELDIFIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T E+ + G+ P
Sbjct: 363 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCASVLVDRTKQREMTAYGGVASAMPRF 418
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A+ ++F + G P T GF +F +
Sbjct: 419 AMFAVLFAMANVGLPGTSGFVGEFMV 444
>gi|118340557|gb|ABK80607.1| putative NADH:ubiquinone oxidoreductase subunit M [uncultured
marine Nitrospinaceae bacterium]
Length = 533
Score = 359 bits (921), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 174/371 (46%), Positives = 266/371 (71%), Gaps = 6/371 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
WI+ + I Y +G+DG+SL +T F+T+I ++ S D+KK + EYM A L LS ++G F
Sbjct: 65 WIEQWGINYHIGLDGISLLLYVMTTFLTMICVIASWDVKKHIREYMIAMLSLSTGMLGVF 124
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS 344
ALD +FY+F+E L+P++II+G WGG R YA+IKFFL+T +GSLLML++++++Y+
Sbjct: 125 IALDLFMFYVFWEFQLVPMYIIVGVWGGPRRIYASIKFFLFTAVGSLLMLVAILWIYFHI 184
Query: 345 NKSFNILSWHQLSITKIEQI------WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
++ + + L IT+ + WL++ FF+AFAIK+P++P HTWLPDAHVEAPT G
Sbjct: 185 QQTTGVATADILYITEHLDVSLDASKWLWLAFFLAFAIKVPMFPFHTWLPDAHVEAPTAG 244
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILA ++LK+G YG LRF+LP FP ASY F ++ LS+I IIY +L+AMVQ D+KKL+
Sbjct: 245 SVILAGVLLKMGTYGFLRFNLPFFPQASYEFVPIVAWLSIIGIIYGALVAMVQEDLKKLV 304
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS++H+GF+ LGIF L IQGA+IQ I+H + +SA+F+ +G +Y++ TRLIS FG
Sbjct: 305 AYSSVSHLGFIMLGIFALNPYGIQGALIQNINHGISTSALFLLVGIVYDRRHTRLISEFG 364
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ ++P ++V F+I +L++ LPG +GF+GEF+++L + N ++ +I +A Y
Sbjct: 365 GLAKIMPKYTVCFMIVALSSIGLPGMNGFVGEFLVLLGIFQVNGLWAACATSGVILAACY 424
Query: 579 SLCLSKNIIFV 589
L + + ++F+
Sbjct: 425 ILWMFQRVMFL 435
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 59/272 (21%)
Query: 4 NLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMA-------------- 49
+LF ++ WE + Y+++G W P I A++K FL +G++
Sbjct: 128 DLFMFYVFWEFQLVPMYIIVGVW-GGPRRIYASIKFFLFTAVGSLLMLVAILWIYFHIQQ 186
Query: 50 ------------------------------------KSAQFPLHTWLPDS-MEGPTPASA 72
K FP HTWLPD+ +E PT A +
Sbjct: 187 TTGVATADILYITEHLDVSLDASKWLWLAFFLAFAIKVPMFPFHTWLPDAHVEAPT-AGS 245
Query: 73 LIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIA 130
+I A ++ G + R + P F + S + I+ ++ I + L+ ++Q D+K+++A
Sbjct: 246 VILAGVLLKMGTYGFLRFNLPFFPQASYEFVPIVAWLSIIGIIYGALVAMVQEDLKKLVA 305
Query: 131 YSTLSQLGYMTVGL-GVSAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
YS++S LG++ +G+ ++ Y + ++ + H + LFL G I+ + +H + I G
Sbjct: 306 YSSVSHLGFIMLGIFALNPYGIQGALIQNINHGISTSALFLLVG-IVYDRRHTRLISEFG 364
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GL K MP + +I LS +G P +GF +
Sbjct: 365 GLAKIMPKYTVCFMIVALSSIGLPGMNGFVGE 396
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 124/264 (46%), Gaps = 15/264 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILY-GITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
A+IK+F+ + S ML I +Y I T + + + +++ S+ A L +
Sbjct: 158 ASIKFFLFTAVGSLLMLVAILWIYFHIQQTTGVATADILYITEHLDVSLDASKWLWLAFF 217
Query: 690 LSF--KLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQ 746
L+F K+ + PFH W+PD + A +++L+ K+ + + R + +
Sbjct: 218 LAFAIKVPMFPFHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFL-RFNLPFFPQASYEFV 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
I+ L+I +I G + A+ Q + K+++AYSS++H+G ++ I ++ + + +
Sbjct: 277 PIVAWLSIIGIIYGALVAMVQEDLKKLVAYSSVSHLGFIMLGIFALNPYGIQGALIQNIN 336
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
G+ + +F ++G I+ + +T ++ F GL + P + MI S G
Sbjct: 337 HGI--STSALFLLVG----IVYDRRHTRLISE----FGGLAKIMPKYTVCFMIVALSSIG 386
Query: 867 FPPTIGFYAKFFIFEKIFETQKIW 890
P GF +F + IF+ +W
Sbjct: 387 LPGMNGFVGEFLVLLGIFQVNGLW 410
>gi|262186696|ref|YP_003275955.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pleurozia purpurea]
gi|237780693|gb|ACR19339.1| NADH dehydrogenase subunit 4 [Pleurozia purpurea]
Length = 495
Score = 359 bits (921), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 197/419 (47%), Positives = 281/419 (67%), Gaps = 21/419 (5%)
Query: 180 NQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKI-------WIDYFNIY 232
N +R + G IT TSLI L + FF + D K W+ Y NI
Sbjct: 31 NSRVRLIRG------ITIWTSLITFLY---SLFFWIRFENDTAKFQFVETIRWLPYPNIN 81
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+++GIDG+SL+F+ LT F+T I IL+ +K EYM AF + I FC+LD ++
Sbjct: 82 FYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFVCESFPIAVFCSLDLLI 141
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FN 349
FY+F E+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++ + +
Sbjct: 142 FYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQ 201
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVILA I+LKL
Sbjct: 202 ILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYSS+AHM FV
Sbjct: 260 GTYGFLRFSIPMFPEATLYFTPFIYVLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFV 319
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
T+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG+++ +P FS
Sbjct: 320 TIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFST 379
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL L ++F
Sbjct: 380 IFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVF 438
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 284
Query: 107 IGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ ++ A + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 VLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MPI
Sbjct: 345 SSALFLCVGALYDRHK-TRIVKYYGGLVSTMPI 376
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 132/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ LE + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 138 DLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + +L++ ++I +++ I Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYVLSVIAIIYTSLTTIRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 359 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|330813994|ref|YP_004358233.1| NADH-ubiquinone oxidoreductase subunit M [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487089|gb|AEA81494.1| NADH-ubiquinone oxidoreductase chain M [Candidatus Pelagibacter sp.
IMCC9063]
Length = 500
Score = 358 bits (920), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 189/382 (49%), Positives = 281/382 (73%), Gaps = 6/382 (1%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSA 272
S F ++KK ID+ + Y +G+DG+S+ F+ LTAFIT I I+ + + +K + ++ A
Sbjct: 61 SSFQFVEEKKWIIDF--VKYKVGVDGISILFVVLTAFITPICIVATYNSVKFRKKDFFIA 118
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
L++ ++IG FC+LD LFY+FFEA LIP+F+IIG WGG R YAA KFFLYTL+GS+
Sbjct: 119 LLVMETMMIGVFCSLDLFLFYLFFEAGLIPMFLIIGIWGGIRRVYAAFKFFLYTLLGSVF 178
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
MLI++I++Y + + ++ + L I Q L++ FF +FA+K P+WP+HTWLPDAHV
Sbjct: 179 MLIAIIFIY-MQTGTTDVEALLALDIPVQYQYLLWLGFFASFAVKTPMWPVHTWLPDAHV 237
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSVILAAI+LK+ YG +RFSL +FP AS +FS L+ +LS+I+I+Y SL+A+VQ
Sbjct: 238 EAPTSGSVILAAILLKMAGYGFIRFSLGLFPVASDFFSPLVFSLSIIAIVYTSLVALVQK 297
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKLIAYSS+AHMGFVT+GIF I+G+I QMISH ++S+A+F+ +G +Y++M TR
Sbjct: 298 DMKKLIAYSSVAHMGFVTIGIFAFNSQGIEGSIFQMISHGIVSAALFLCVGVVYDRMHTR 357
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
IS++GG+ NV+P++++ F++F LA+ LPGTSGF+GE ++++ K N+ + +T +
Sbjct: 358 QISDYGGVSNVMPNYAIVFMVFILASVGLPGTSGFVGEILVLIGIFKTNYLVAFFAATGV 417
Query: 573 IFSAAYSLCLSKNIIFVLGQMI 594
+ SA YSL L + + F G++I
Sbjct: 418 VLSACYSLSLYRRVCF--GEII 437
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 100/175 (57%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K+ +P+HTWLPD+ +E PT S ++ A + AG I LF +++ S ++F
Sbjct: 222 KTPMWPVHTWLPDAHVEAPTSGSVILAAILLKMAGYGFIRFSLGLFPVASDFFSPLVFSL 281
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
+I A + L+ ++Q D+K++IAYS+++ +G++T+G+ G+ SIF +++H
Sbjct: 282 SIIAIVYTSLVALVQKDMKKLIAYSSVAHMGFVTIGIFAFNSQGIEG---SIFQMISHGI 338
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LFL G ++ + H + I + GG+ MP I ++ +L+ VG P SGF
Sbjct: 339 VSAALFLCVG-VVYDRMHTRQISDYGGVSNVMPNYAIVFMVFILASVGLPGTSGF 392
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 126/263 (47%), Gaps = 26/263 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S FML I +Y TGT +++++ + +I L L
Sbjct: 164 AAFKFFLYTLLGSVFMLIAIIFIYMQTGTTDVEALLAL----DIPVQYQYLLWLGFFASF 219
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
+ K + P H W+PD + G+ I+ +LL K++ + I L L P+ ++
Sbjct: 220 AVKTPMWPVHTWLPDAHVEAPTSGSVILAAILL----KMAGYGFIRFSL--GLFPVASDF 273
Query: 746 -QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
++ L+I +++ ++ A+ Q + K++IAYSS+AHMG + I + + IF
Sbjct: 274 FSPLVFSLSIIAIVYTSLVALVQKDMKKLIAYSSVAHMGFVTIGIFAFNSQGIEGSIFQM 333
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
G+ + +F +G ++ + +T +D + G+ P A++ M+F+ +
Sbjct: 334 ISHGI--VSAALFLCVG----VVYDRMHTRQISD----YGGVSNVMPNYAIVFMVFILAS 383
Query: 865 AGFPPTIGFYAKFFIFEKIFETQ 887
G P T GF + + IF+T
Sbjct: 384 VGLPGTSGFVGEILVLIGIFKTN 406
>gi|421467255|ref|ZP_15915891.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC
BAA-247]
gi|400233834|gb|EJO63342.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC
BAA-247]
Length = 557
Score = 358 bits (920), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 180/410 (43%), Positives = 287/410 (70%), Gaps = 12/410 (2%)
Query: 188 GLYKYMPITCITSLIGLLSLVGA--PFFSGFYSKDKKKIWID------YFNIYYFLGIDG 239
G +++ T + +LIG ++ + A P +GF +++ F + G+DG
Sbjct: 73 GSDQHLQRTRLIALIGAIAGLAAVVPIVAGFDPHSAAMQFVENRNGLSAFGAGWRTGVDG 132
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
SLW + LTAF TL++++ S + ++A+Y ++F ILSGL+IG F A DG+LF+IFFEA
Sbjct: 133 ASLWLVVLTAFTTLVVVVASWQAVTVRVAQYYASFQILSGLMIGVFVAQDGLLFFIFFEA 192
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
TLIP++++IGTWG +R YAA+KFF + GSLL+L++M+YLY S+ +F++ +W L +
Sbjct: 193 TLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLYAKSH-TFDMAAWRTLQL 251
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q+ +F+ FF AFA+K+P+WP+HTWL D + + PT +++LA MLKLG YG LRF+
Sbjct: 252 GFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLA--MLKLGGYGFLRFA 309
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LPI PDAS++F+ +I LSL +I+Y SL+A+ Q D KL+AYS++AHMG VTLG+F+ +
Sbjct: 310 LPITPDASHFFAPAVIALSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNR 369
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
I ++GAI+Q++S+ ++ AM + L ++ K R ++ +GG+ + +P F++F ++F++AN
Sbjct: 370 IGVEGAIVQLVSYGFVAGAMLLCASVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMAN 429
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEFM+I+ A++ NF IG + LIFSA+Y+L + K +++
Sbjct: 430 VGLPGTSGFVGEFMVIMGAIRVNFWIGAAAALTLIFSASYTLWMLKRVVW 479
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 24/183 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K +P+HTWL D +GPT A+ ++ M+ G + R F L T + F
Sbjct: 270 KVPMWPVHTWLRDVYTDGPTGAALML---AMLKLGGYGFLR----FALPITPDASHFFAP 322
Query: 109 AITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHL 156
A+ A + LL + Q D +++AYST++ +G +T+GL GV +I L
Sbjct: 323 AVIALSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQL 379
Query: 157 MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+++ F + L A S++++ +++ GG+ MP + +++ ++ VG P SGF
Sbjct: 380 VSYGFVAGAMLLCA-SVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGF 438
Query: 217 YSK 219
+
Sbjct: 439 VGE 441
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 270 KVPMWPVHTWLRDVYTDGPTGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 319
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q +F +++AYS++AHMG++
Sbjct: 320 FAPAVIA-------LSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTL---------- 362
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--ELDIFIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T E+ + G+ P
Sbjct: 363 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCASVLVDRTKQREMTAYGGVASAMPRF 418
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A+ ++F + G P T GF +F +
Sbjct: 419 AMFAVLFAMANVGLPGTSGFVGEFMV 444
>gi|374092122|gb|AEY83725.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Sphagnum
fallax]
Length = 418
Score = 358 bits (920), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 261/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI++++GIDG+SL+F+ LT F+ I IL+ IK EYM AFLI +I
Sbjct: 4 WLPYPNIHFYIGIDGISLFFVVLTTFLIPICILVGRSSIKSYKREYMIAFLICESFMIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++++
Sbjct: 64 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIPS 123
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ IL + S + QI L+I FF +F++K+P+ P H WLP+AHVEAPT GSVI
Sbjct: 124 QTGSTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMIPFHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ + LS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFVYALSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L +IF
Sbjct: 362 LYNRVIF 368
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 157 KVPMIPFHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFVYA 215
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 216 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 275
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MP+
Sbjct: 276 SALFLCVGALYDRHK-TRLVKYYGGLVSTMPM 306
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 149/347 (42%), Gaps = 27/347 (7%)
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLG 607
I F ++L+ CI V S+ + Y + F++ M+ +LL Y+
Sbjct: 19 ISLFFVVLTTFLIPICILVGRSSIKSYKREYMIAFLICESFMIAVFCML---DLLLFYVF 75
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I + TG+ +LQ
Sbjct: 76 FESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIPSQTGSTDLQ---- 131
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTP 722
++ + L + S K+ + PFH+W+P+ + G+ I+ +LL
Sbjct: 132 ILLTTEFSERRQILLWIAFFASFSVKVPMIPFHIWLPEAHVEAPTAGSVILAGILL---- 187
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
KL + + R I + + + L++ ++I +++ I Q + K++IAYSS+AHM
Sbjct: 188 KLGTYGFL-RFSIPMFPEATLYFTPFVYALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHM 246
Query: 783 GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI 842
+ + S+ I GL + + +F +GA L + +KT +
Sbjct: 247 NFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR--HKTRLVKY 296
Query: 843 FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ GL P + I + F + P T F +F I F+ +
Sbjct: 297 YGGLVSTMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|374092044|gb|AEY83686.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Reboulia
hemisphaerica]
Length = 410
Score = 358 bits (919), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 264/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 4 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 64 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF F++K+ + P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGSTDLQILLTTEFS--ERRQILLWIAFFAPFSVKVLMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 156 VKVLMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 214
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 215 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 274
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 275 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 306
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TG+
Sbjct: 68 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGS 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFAPFSVKVLMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 184 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 239 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 288
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 289 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|253702583|ref|YP_003023772.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Geobacter sp. M21]
gi|251777433|gb|ACT20014.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Geobacter sp. M21]
Length = 535
Score = 358 bits (919), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 173/363 (47%), Positives = 262/363 (72%), Gaps = 3/363 (0%)
Query: 229 FNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCAL 287
F + Y LGIDG+SLW + LT FI I IL + +++K+ EYM L+L +IG F ++
Sbjct: 78 FQMSYHLGIDGISLWLVILTTFIMPIAILSTYTAVEEKVKEYMICLLLLEVGMIGTFISI 137
Query: 288 DGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNK 346
D LFYI++E LIP++ +IG WGG NR YAA+KFF+YT +GSLLML+++I LY+
Sbjct: 138 DLFLFYIYWEVMLIPMYFMIGIWGGKNRIYAAVKFFIYTAVGSLLMLVALISLYFKAGGG 197
Query: 347 SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
F+I+ + +L++ Q+W+F+ F +AFAIK+P++P+HTWLPDAH EAPT GSVILAA+M
Sbjct: 198 DFSIIRFWELNLDPATQVWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPTAGSVILAAVM 257
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LK G YG +RF++P+FP+AS F+ LI TLS+I IIY SL+AMVQ D+KKL+AYSS+AH+
Sbjct: 258 LKCGTYGYIRFAMPLFPEASAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYSSVAHL 317
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
GFV LG++ L + G ++QM++H + + A+F+ +GF+Y + TR IS+FGG+ +P
Sbjct: 318 GFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVGFIYERRHTRQISDFGGLAKQMPV 377
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNF-CIGVLTSTALIFSAAYSLCLSKN 585
F+ F+I + ++ LPGT+GF+GEF+++L + + ++ ++ +I SA Y L + +
Sbjct: 378 FATMFMIVTFSSIGLPGTNGFVGEFLVLLGSFESELRWYAIIATSGVILSAVYMLWMFQR 437
Query: 586 IIF 588
++F
Sbjct: 438 VMF 440
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 9/210 (4%)
Query: 16 GMASYLLIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALI 74
G + +I FW + L + FL + K FPLHTWLPD+ E PT A ++I
Sbjct: 195 GGGDFSIIRFW-ELNLDPATQVWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPT-AGSVI 252
Query: 75 HAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
AA M+ G + R + PLF E S +I + I + L+ ++Q D+K+++AYS
Sbjct: 253 LAAVMLKCGTYGYIRFAMPLFPEASAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYS 312
Query: 133 TLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
+++ LG++ +G L T + ++ H LFL G I +H + I + GGL
Sbjct: 313 SVAHLGFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVG-FIYERRHTRQISDFGGL 371
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
K MP+ +I S +G P +GF +
Sbjct: 372 AKQMPVFATMFMIVTFSSIGLPGTNGFVGE 401
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L IY + L+ + + I KN I+ AA+K+FI + S ML + LY G
Sbjct: 141 LFYIYWEVMLIPMYFMIGIWGGKNRIY---AAVKFFIYTAVGSLLMLVALISLYFKAGGG 197
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
+ F++I+ +N + + L+F K+ + P H W+PD + A +++L
Sbjct: 198 D----FSIIRFWELNLDPATQVWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPTAGSVIL 253
Query: 719 STTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYS 777
+ L Y L P + ++ L++ +I ++ A+ Q + K+++AYS
Sbjct: 254 AAV-MLKCGTYGYIRFAMPLFPEASAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYS 312
Query: 778 SIAHMGLMLFSIISIKTSHNNLIIFNSCDSG-----LFYIITYIFAILGAFGVIILLKNN 832
S+AH+G ++ + ++ T + + G LF I+ +I+ + +
Sbjct: 313 SVAHLGFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVGFIYE-----------RRH 361
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
T +D F GL ++ P A + MI FS G P T GF +F + FE++ W
Sbjct: 362 TRQISD----FGGLAKQMPVFATMFMIVTFSSIGLPGTNGFVGEFLVLLGSFESELRW 415
>gi|424886528|ref|ZP_18310136.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393175879|gb|EJC75921.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 491
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 178/391 (45%), Positives = 262/391 (67%), Gaps = 7/391 (1%)
Query: 197 CITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
CI L+G + A F+ + + W+ I Y LGIDG+S F+ LTA + I +
Sbjct: 44 CIAMLVGFDTTTHAMQFT------ETRPWVPALGINYALGIDGISALFVFLTALLGSICV 97
Query: 257 LIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L S + I +K+ E+M L + L++G FCALD LFY+F+EA LIP+++IIG WGG R
Sbjct: 98 LASWVAIDRKVKEFMICLLSMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGR 157
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YAAIKFFLYTL GSLL LI +I LY+ ++F+IL+ + + Q WLF F IAFA
Sbjct: 158 VYAAIKFFLYTLAGSLLFLIGVIVLYFYGGRTFDILALTEQDLPFRIQSWLFFAFLIAFA 217
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+ P+HTWLPDAHV+APT GS+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++
Sbjct: 218 VKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS+++I+Y L+A+ Q D+KKL+AYSSI+HMGFVTLGIF L ++G I+QM +H + +
Sbjct: 278 LSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGGILQMFNHGVTT 337
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIIL 555
A+F+ +G +Y + TR I+++GG++ V P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 338 GALFLFVGLIYERTHTRSIADYGGLMKVAPVYTTFLALFTLSSMALPGTNSFVGELLVLS 397
Query: 556 SAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
N G + AAY L + +
Sbjct: 398 GGFAANLVAGSAAVLGALLGAAYLLGMYGKV 428
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ + + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIADYGGLMKVAPV 368
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AAIK+F+ + S L G+ +LY G F+++ L + S L ++
Sbjct: 160 AAIKFFLYTLAGSLLFLIGVIVLYFYGG-----RTFDILALTEQDLPFRIQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASMYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIK 793
++L L++ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALN 319
>gi|357977057|ref|ZP_09141028.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sphingomonas sp. KC8]
Length = 511
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/365 (47%), Positives = 266/365 (72%), Gaps = 3/365 (0%)
Query: 226 IDYFNIY-YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
ID F + + LGIDG++L I L+ F+ I I S + I+K++ EYM+AFL++ L+IG
Sbjct: 64 IDLFGRFSWALGIDGIALVLIMLSVFLMPICIGASWEAIEKRVPEYMAAFLLMEALMIGV 123
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F A D LFYIFFEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LML++M+++
Sbjct: 124 FAAQDLFLFYIFFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLVAMLWMARE 183
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ + +I + + Q WLF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA
Sbjct: 184 AGTT-DIPTLMAYNFPVQAQTWLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILA 242
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
++LK+G YG +RFSLP+FP AS L++ LS+++++Y SL+A+VQ D+KKLIAYSS+
Sbjct: 243 GVLLKMGGYGFIRFSLPMFPQASAELFWLVMGLSMVAVVYTSLVALVQTDMKKLIAYSSV 302
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHM FVT+G+F + ++GA++ M+SH L+S A+F+ +G +Y+++ TR I+ +GG+ N
Sbjct: 303 AHMAFVTIGLFAFNQQGLEGAMLVMLSHGLVSGALFLCVGVIYDRLHTREIARYGGLSNN 362
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P +++ F++F++A+ LPGTSGF+GEF+ ++ A N + + +T +I AAY L L
Sbjct: 363 MPKYALLFMLFTMASVGLPGTSGFVGEFLSLVGAYHANSWVAFVATTGIILGAAYMLYLY 422
Query: 584 KNIIF 588
+ +
Sbjct: 423 ARVCY 427
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTAL-SIILF 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L +++
Sbjct: 216 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPQASAELFWLVMG 274
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q D+K++IAYS+++ + ++T+GL ++ +++H
Sbjct: 275 LSMVAVVYTSLVALVQTDMKKLIAYSSVAHMAFVTIGLFAFNQQGLEGAMLVMLSHGLVS 334
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 335 GALFLCVG-VIYDRLHTREIARYGGLSNNMPKYALLFMLFTMASVGLPGTSGFVGE 389
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 135/306 (44%), Gaps = 44/306 (14%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L + +MI + +L Y+ E L+ + L + I + I++S K+F+ +L
Sbjct: 113 FLLMEALMIGVFAAQDLFLFYIFFEAGLIPMYLIIGIWGGADRIYAS---YKFFLYTLLG 169
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFH 700
S ML + + GT ++ + L N V A + L + SF K+ + P H
Sbjct: 170 SVLMLVAMLWMAREAGTTDIPT------LMAYNFPVQAQTWLFLAFFASFAVKMPMWPVH 223
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK----ILLILAIFS 756
W+PD + A +++L+ L + I+ LP+ +++ L++ +
Sbjct: 224 TWLPDAHVQAPTAGSVILAGV----LLKMGGYGFIRFSLPMFPQASAELFWLVMGLSMVA 279
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
++ ++ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ LF
Sbjct: 280 VVYTSLVALVQTDMKKLIAYSSVAHMAFVTIGLFAFNQQGLEGAMLVMLSHGLVSGALFL 339
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ I+ L T E+ + GL P AL+ M+F + G P T
Sbjct: 340 CVGVIYDRL---------------HTREIARYGGLSNNMPKYALLFMLFTMASVGLPGTS 384
Query: 872 GFYAKF 877
GF +F
Sbjct: 385 GFVGEF 390
>gi|297181768|gb|ADI17949.1| NADH:ubiquinone oxidoreductase subunit 4 (chain m) [uncultured
Desulfobacterales bacterium HF0200_07G10]
Length = 533
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/371 (46%), Positives = 266/371 (71%), Gaps = 6/371 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
WI+ + I Y +G+DG+SL +T F+T+I ++ S D+KK + EYM A L LS ++G F
Sbjct: 65 WIEQWGINYHIGLDGISLLLYVMTTFLTMICVIASWDVKKHIREYMIAMLALSTGMLGVF 124
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS 344
ALD +FY+F+E L+P++II+G WGG R YA+IKFFL+T +GSLLML++++++Y+
Sbjct: 125 IALDLFMFYVFWEFQLVPMYIIVGVWGGPRRIYASIKFFLFTAVGSLLMLVAILWIYFHI 184
Query: 345 NKSFNILSWHQLSITKIEQI------WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
K+ + + L IT+ + WL++ FF+AFAIK+P++P HTWLPDAHVEAPT G
Sbjct: 185 QKTTGVATADILYITEHLDVSLDTSKWLWMAFFLAFAIKVPMFPFHTWLPDAHVEAPTAG 244
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILA ++LK+G YG LRF+LP FP ASY F ++ LS+I I+Y +L+AMVQ D+KKL+
Sbjct: 245 SVILAGVLLKMGTYGFLRFNLPFFPQASYEFVPMVAWLSIIGIVYGALVAMVQEDLKKLV 304
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS++H+GF+ LGIF L IQGA+IQ I+H + +SA+F+ +G +Y++ TR+I+ FG
Sbjct: 305 AYSSVSHLGFIMLGIFALNPYGIQGALIQNINHGISTSALFLLVGIVYDRRHTRMIAEFG 364
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ ++P ++V F+I +L++ LPG +GF+GEF+++L + N ++ +I +A Y
Sbjct: 365 GLAKIMPKYTVCFMIVALSSIGLPGMNGFVGEFLVLLGIFQVNGLWAACATSGVILAACY 424
Query: 579 SLCLSKNIIFV 589
L + + ++F+
Sbjct: 425 ILWMFQRVMFL 435
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 124/272 (45%), Gaps = 59/272 (21%)
Query: 4 NLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMA-------------- 49
+LF ++ WE + Y+++G W P I A++K FL +G++
Sbjct: 128 DLFMFYVFWEFQLVPMYIIVGVW-GGPRRIYASIKFFLFTAVGSLLMLVAILWIYFHIQK 186
Query: 50 ------------------------------------KSAQFPLHTWLPDS-MEGPTPASA 72
K FP HTWLPD+ +E PT A +
Sbjct: 187 TTGVATADILYITEHLDVSLDTSKWLWMAFFLAFAIKVPMFPFHTWLPDAHVEAPT-AGS 245
Query: 73 LIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIA 130
+I A ++ G + R + P F + S + ++ ++ I + L+ ++Q D+K+++A
Sbjct: 246 VILAGVLLKMGTYGFLRFNLPFFPQASYEFVPMVAWLSIIGIVYGALVAMVQEDLKKLVA 305
Query: 131 YSTLSQLGYMTVGL-GVSAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
YS++S LG++ +G+ ++ Y + ++ + H + LFL G I+ + +H + I G
Sbjct: 306 YSSVSHLGFIMLGIFALNPYGIQGALIQNINHGISTSALFLLVG-IVYDRRHTRMIAEFG 364
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GL K MP + +I LS +G P +GF +
Sbjct: 365 GLAKIMPKYTVCFMIVALSSIGLPGMNGFVGE 396
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 119/270 (44%), Gaps = 27/270 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILY---GITGTLELQSIFNVIKLNNINCSVLALSLLLII 687
A+IK+F+ + S ML I +Y T + I + + +++ +
Sbjct: 158 ASIKFFLFTAVGSLLMLVAILWIYFHIQKTTGVATADILYITEHLDVSLDTSKWLWMAFF 217
Query: 688 VGLSFKLGISPFHMWVPDVYQGA----SIIIT---LLLSTTPKLSLFVIIYRLLIKCLLP 740
+ + K+ + PFH W+PD + A S+I+ L + T L + + +P
Sbjct: 218 LAFAIKVPMFPFHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPFFPQASYEFVP 277
Query: 741 LVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLI 800
+V W L+I ++ G + A+ Q + K+++AYSS++H+G ++ I ++
Sbjct: 278 MV-AW------LSIIGIVYGALVAMVQEDLKKLVAYSSVSHLGFIMLGIFALNPYGIQGA 330
Query: 801 IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIF 860
+ + + G+ + +F ++G I+ + +T + F GL + P + MI
Sbjct: 331 LIQNINHGI--STSALFLLVG----IVYDRRHTRMIAE----FGGLAKIMPKYTVCFMIV 380
Query: 861 MFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
S G P GF +F + IF+ +W
Sbjct: 381 ALSSIGLPGMNGFVGEFLVLLGIFQVNGLW 410
>gi|197120275|ref|YP_002140702.1| NADH dehydrogenase I subunit M [Geobacter bemidjiensis Bem]
gi|197089635|gb|ACH40906.1| NADH dehydrogenase I, M subunit [Geobacter bemidjiensis Bem]
Length = 535
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/363 (47%), Positives = 263/363 (72%), Gaps = 3/363 (0%)
Query: 229 FNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCAL 287
F + Y LGIDG+SLW + LT FI I IL + +++K+ EYM L+L +IG F +L
Sbjct: 78 FQMSYHLGIDGISLWLVILTTFIMPISILSTYTAVEEKVKEYMICLLLLEVGMIGTFISL 137
Query: 288 DGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNK 346
D LFYI++E LIP++ +IG WGG NR YAA+KFF+YT +GSLLML+++I LY+
Sbjct: 138 DLFLFYIYWEVMLIPMYFMIGIWGGKNRIYAAVKFFIYTAVGSLLMLVALISLYFKAGGG 197
Query: 347 SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
F+I+ + +L++ Q+W+F+ F +AFAIK+P++P+HTWLPDAH EAPT GSVILAA+M
Sbjct: 198 DFSIIRFWELNLDPTTQMWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPTAGSVILAAVM 257
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LK G YG +RF++P+FP+AS F+ LI TLS+I IIY SL+AMVQ D+KKL+AYSS+AH+
Sbjct: 258 LKCGTYGYVRFAMPLFPEASAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYSSVAHL 317
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
GFV LG++ L + G ++QM++H + + A+F+ +GF+Y + TR IS+FGG+ +P
Sbjct: 318 GFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVGFIYERRHTRQISDFGGLAKQMPV 377
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNF-CIGVLTSTALIFSAAYSLCLSKN 585
F+ F+I + ++ LPGT+GF+GEF+++L + + + ++ ++ +I SA Y L + +
Sbjct: 378 FATMFMIVTFSSIGLPGTNGFVGEFLVLLGSFESSLRWYAIIATSGVILSAVYMLWMFQR 437
Query: 586 IIF 588
++F
Sbjct: 438 VMF 440
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 9/210 (4%)
Query: 16 GMASYLLIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALI 74
G + +I FW + L T + FL + K FPLHTWLPD+ E PT A ++I
Sbjct: 195 GGGDFSIIRFW-ELNLDPTTQMWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPT-AGSVI 252
Query: 75 HAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
AA M+ G + R + PLF E S +I + I + L+ ++Q D+K+++AYS
Sbjct: 253 LAAVMLKCGTYGYVRFAMPLFPEASAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYS 312
Query: 133 TLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
+++ LG++ +G L T + ++ H LFL G I +H + I + GGL
Sbjct: 313 SVAHLGFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVG-FIYERRHTRQISDFGGL 371
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
K MP+ +I S +G P +GF +
Sbjct: 372 AKQMPVFATMFMIVTFSSIGLPGTNGFVGE 401
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 31/298 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L IY + L+ + + I KN I+ AA+K+FI + S ML + LY G
Sbjct: 141 LFYIYWEVMLIPMYFMIGIWGGKNRIY---AAVKFFIYTAVGSLLMLVALISLYFKAGGG 197
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLL 718
+ F++I+ +N + + L+F K+ + P H W+PD + A +++L
Sbjct: 198 D----FSIIRFWELNLDPTTQMWMFLAFALAFAIKVPMFPLHTWLPDAHTEAPTAGSVIL 253
Query: 719 STTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYS 777
+ L Y L P + ++ L++ +I ++ A+ Q + K+++AYS
Sbjct: 254 AAV-MLKCGTYGYVRFAMPLFPEASAQFTPLIATLSVIGIIYASLVAMVQQDVKKLVAYS 312
Query: 778 SIAHMGLMLFSIISIKTSHNNLIIFNSCDSG-----LFYIITYIFAILGAFGVIILLKNN 832
S+AH+G ++ + ++ T + + G LF I+ +I+ + +
Sbjct: 313 SVAHLGFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVGFIYE-----------RRH 361
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
T +D F GL ++ P A + MI FS G P T GF +F + FE+ W
Sbjct: 362 TRQISD----FGGLAKQMPVFATMFMIVTFSSIGLPGTNGFVGEFLVLLGSFESSLRW 415
>gi|424896824|ref|ZP_18320398.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393181051|gb|EJC81090.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 491
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/391 (45%), Positives = 260/391 (66%), Gaps = 7/391 (1%)
Query: 197 CITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
CI L+G + A FS + + W+ I Y LGIDG+S F+ LTA + I +
Sbjct: 44 CIAMLVGFDTTTHAMQFS------ETRPWVPVLGINYALGIDGISALFVFLTALLGSICV 97
Query: 257 LIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L S + I +K+ E+M L + L++G FCALD LFY+F+EA LIP+++IIG WGG R
Sbjct: 98 LASWVAIDRKVKEFMICLLSMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGR 157
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YAAIKFFLYTL GSLL LI +I LY+ ++F+IL+ + + Q WLF F IAFA
Sbjct: 158 VYAAIKFFLYTLAGSLLFLIGVIVLYFYGGRTFDILALTEQDLPFRIQSWLFFAFLIAFA 217
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+ P+HTWLPDAHV+APT GS+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++
Sbjct: 218 VKVPMVPLHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS ++I+Y L+A+ Q D+KKL+AYSSI+HMGFVTLGIF L ++G I+QM +H + +
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGGILQMFNHGVTT 337
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIIL 555
A+F+ +G +Y + TR I+++GG++ P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 338 GALFLLVGLIYERTHTRSIADYGGLMKAAPVYTTFLALFTLSSMALPGTNSFVGELLVLS 397
Query: 556 SAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
N G + AAY L + +
Sbjct: 398 GGFAANLVAGSAAVLGALLGAAYLLGMYGKV 428
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K PLHTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPLHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 338 GALFLLVG-LIYERTHTRSIADYGGLMKAAPV 368
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 112/262 (42%), Gaps = 19/262 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AAIK+F+ + S L G+ +LY G F+++ L + S L ++
Sbjct: 160 AAIKFFLYTLAGSLLFLIGVIVLYFYGG-----RTFDILALTEQDLPFRIQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPLHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASMYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++ +
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALN--------LRGLEG 325
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
G+ + + F ++ L+ T T + + GL + P + +F S
Sbjct: 326 GILQMFNHGVTTGALFLLVGLIYERT--HTRSIADYGGLMKAAPVYTTFLALFTLSSMAL 383
Query: 868 PPTIGFYAKFFIFEKIFETQKI 889
P T F + + F +
Sbjct: 384 PGTNSFVGELLVLSGGFAANLV 405
>gi|374092098|gb|AEY83713.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Tritomaria
quinquedentata]
Length = 429
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 261/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++ +
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFISF 150
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSPNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G+ + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSPNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 303 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I + TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFISFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSPNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|149184623|ref|ZP_01862941.1| NADH-quinone oxidoreductase chain M [Erythrobacter sp. SD-21]
gi|148831943|gb|EDL50376.1| NADH-quinone oxidoreductase chain M [Erythrobacter sp. SD-21]
Length = 514
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 259/357 (72%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LGIDG++L I L+ F+ I IL S D I K++ EYM+AFL++ L+IG F A D L
Sbjct: 71 YALGIDGIALMLIMLSVFLMPICILASWDGITKRVGEYMAAFLLMEVLMIGVFAAQDLFL 130
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP+++IIG WGG NR YA+ KFFLYTL+GS+LMLI+M+++ + S +I
Sbjct: 131 FYIFFEAGLIPMYLIIGVWGGDNRIYASYKFFLYTLLGSVLMLIAMLWMVNEAGTS-DIP 189
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q Q+WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LKLG
Sbjct: 190 TLMQYDFPVGAQLWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGG 249
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FPDAS + L+ LS++++IY SL+A+VQ D+KKLIAYSS+AHM V +
Sbjct: 250 YGFIRFSLPMFPDASADLAWLVFALSMVAVIYTSLVALVQHDMKKLIAYSSVAHMAIVMV 309
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F ++GA++ M+ H L+S A+F+ +G +Y+++ TR I+ +GG+ +P +++FF
Sbjct: 310 GLFAFNVQGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREIARYGGLSINMPKYALFF 369
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ + K + + ++ +T +I AAY L L + + F
Sbjct: 370 LLFTMASVGLPGTSNFVGEFLALAGIYKVSTFVTLVCTTGIILGAAYMLYLYRRVAF 426
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 10/199 (5%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
YD P + A L +L K +P+HTWLPD+ ++ PT A ++I A ++ G +
Sbjct: 194 YDFP--VGAQLWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGY 250
Query: 86 MITRMS-PLFELSNTALSIILF-IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R S P+F ++ L+ ++F + + + L+ ++Q+D+K++IAYS+++ + + VG
Sbjct: 251 GFIRFSLPMFPDASADLAWLVFALSMVAVIYTSLVALVQHDMKKLIAYSSVAHMAIVMVG 310
Query: 144 L---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITS 200
L V ++ ++ H LFL G +I + H ++I GGL MP +
Sbjct: 311 LFAFNVQGLEGAMMVMLGHGLVSGALFLCVG-VIYDRLHTREIARYGGLSINMPKYALFF 369
Query: 201 LIGLLSLVGAPFFSGFYSK 219
L+ ++ VG P S F +
Sbjct: 370 LLFTMASVGLPGTSNFVGE 388
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 34/311 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L +++MI + +L Y+ E L+ + L + + N I++S K+F+ +L
Sbjct: 112 FLLMEVLMIGVFAAQDLFLFYIFFEAGLIPMYLIIGVWGGDNRIYAS---YKFFLYTLLG 168
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ + L + K+ + P H W
Sbjct: 169 SVLMLIAMLWMVNEAGTSDIPTLMQ----YDFPVGAQLWLWLAFFASFAVKMPMWPVHTW 224
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+PD + Q + +L KL + I R + + ++ L++ ++I +
Sbjct: 225 LPDAHVQAPTAGSVILAGVLLKLGGYGFI-RFSLPMFPDASADLAWLVFALSMVAVIYTS 283
Query: 762 VSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q++ K++IAYSS+AHM GL F++ ++ + ++ LF + I
Sbjct: 284 LVALVQHDMKKLIAYSSVAHMAIVMVGLFAFNVQGLEGAMMVMLGHGLVSGALFLCVGVI 343
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+ + GL P AL ++F + G P T F +
Sbjct: 344 YDRL---------------HTREIARYGGLSINMPKYALFFLLFTMASVGLPGTSNFVGE 388
Query: 877 FFIFEKIFETQ 887
F I++
Sbjct: 389 FLALAGIYKVS 399
>gi|14272171|emb|CAC39485.1| NADH dehydrogenase subunit 4 [Corsinia coriandra]
Length = 418
Score = 357 bits (915), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 182/367 (49%), Positives = 264/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I ++
Sbjct: 4 WLPCSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLVAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 64 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+L+LG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLRLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS IGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPIFSTIFLFFTLANMSLPGTSSLIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 156 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLRLGTYGFLRFSIPMFPEATLYFTPFIY 214
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 215 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 274
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 275 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 306
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 68 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL +L + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 184 GILL----RLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHMGLMLFSIISI 792
AYSS+AHM + + S+
Sbjct: 239 AYSSVAHMNFVTIGMFSL 256
>gi|393718323|ref|ZP_10338250.1| NADH-quinone oxidoreductase subunit M [Sphingomonas echinoides ATCC
14820]
Length = 504
Score = 357 bits (915), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 258/355 (72%), Gaps = 2/355 (0%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
LGIDG +L + L+ F+ I I S + I +++ EYM+AFLI L+IG F A D LFY
Sbjct: 69 LGIDGFALMLVMLSVFLMPICIGASWVAITERVQEYMAAFLITEMLMIGTFTAQDMFLFY 128
Query: 294 IFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW 353
IFFEA LIP+++IIG WGG+NR YA+ KFFLYTL+GS+LML++M+++ S S +I +
Sbjct: 129 IFFEAGLIPMYLIIGIWGGANRIYASYKFFLYTLLGSVLMLVAMLWMVSFSGTS-DIPTL 187
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
Q WL++ FF +FA+K+P+WP HTWLPDAHV+APT GSVILA ++LKLG YG
Sbjct: 188 LNTDFPVRVQPWLWLAFFASFAVKMPMWPFHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 247
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
LRFSLP+FP+AS F LI++LS I++IY SL+A+VQ D+KKLIAYSS+AHM VT+G+
Sbjct: 248 FLRFSLPMFPEASAQFGWLILSLSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGL 307
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
F + ++GA+I M+SH L+S+A+F+ +G +Y+++ TR IS +GG+ +P +++ F++
Sbjct: 308 FAFNRQGLEGAMIVMLSHGLVSAALFLCVGVIYDRLHTREISRYGGLAINMPRYALLFML 367
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++A+ LPGTSGF+GEF+ + + + +L +T +I AAY L L + ++F
Sbjct: 368 FTMASVGLPGTSGFVGEFLSLAGTYRVSTLATLLCTTGIILGAAYMLYLYRRVVF 422
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ +IL
Sbjct: 211 KMPMWPFHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPEASAQFGWLILS 269
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L+ ++Q+D+K++IAYS+++ + +T+GL ++ +++H
Sbjct: 270 LSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGLEGAMIVMLSHGLVS 329
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 330 AALFLCVG-VIYDRLHTREISRYGGLAINMPRYALLFMLFTMASVGLPGTSGFVGE 384
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 137/317 (43%), Gaps = 34/317 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F++ +M+MI + ++ Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 108 FLITEMLMIGTFTAQDMFLFYIFFEAGLIPMYLIIGIWGGANRIYAS---YKFFLYTLLG 164
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + +GT ++ ++ N + V L + K+ + PFH W
Sbjct: 165 SVLMLVAMLWMVSFSGTSDIPTLLN----TDFPVRVQPWLWLAFFASFAVKMPMWPFHTW 220
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+PD + Q + +L KL + + R + + ++L L+ ++I +
Sbjct: 221 LPDAHVQAPTAGSVILAGVLLKLGGYGFL-RFSLPMFPEASAQFGWLILSLSAIAVIYTS 279
Query: 762 VSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ + LF + I
Sbjct: 280 LVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGLEGAMIVMLSHGLVSAALFLCVGVI 339
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+ + GL P AL+ M+F + G P T GF +
Sbjct: 340 YDRL---------------HTREISRYGGLAINMPRYALLFMLFTMASVGLPGTSGFVGE 384
Query: 877 FFIFEKIFETQKIWLLL 893
F + + LL
Sbjct: 385 FLSLAGTYRVSTLATLL 401
>gi|251773155|gb|EES53708.1| NADH dehydrogenase (quinone), chain M [Leptospirillum
ferrodiazotrophum]
Length = 468
Score = 357 bits (915), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 268/369 (72%), Gaps = 1/369 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ +WI + NI+Y LGIDG+SL + +T F+ + IL S + I K L +M L+L G
Sbjct: 69 ENHLWIPFGNIHYALGIDGISLVLVLMTTFLMPMTILTSWVGISKNLPLFMINLLVLEGA 128
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
+IG FCA D +LFY+F+EA LIP+++IIG WGG NR YAAIKFFLYTL GSLL+L+++I
Sbjct: 129 MIGVFCATDFVLFYVFWEAMLIPMYLIIGVWGGPNRIYAAIKFFLYTLAGSLLLLVAIIA 188
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY++ +F+I QI F+ F+AFA+KIP++P HTWLPDAHVEAPT GS
Sbjct: 189 LYFVGGHTFDIARLSGQHYGMSFQILAFLAMFVAFAVKIPMFPFHTWLPDAHVEAPTAGS 248
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
VILA+IMLK+G YG LRFSLP+FPDAS++F+ +I+TLS+I+II+ + +A+ Q D+KKLIA
Sbjct: 249 VILASIMLKMGAYGFLRFSLPMFPDASHFFAPMILTLSVIAIIWGAFMALAQEDMKKLIA 308
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS++HMG VTLGIF+ I+GA++QM++H + + A+F+ IG LY++ +R +S +GG
Sbjct: 309 YSSVSHMGVVTLGIFVANTQGIEGALMQMLNHGITTGALFLCIGVLYDRSHSRQLSEYGG 368
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
+ +P +S +IF+L++ +LPGT+ F+GEF++++ + K + + L +T +I SA Y
Sbjct: 369 LAKQMPVYSTLLVIFALSSLALPGTNSFVGEFLVLIGSFKTHAVVSSLATTGVILSAMYL 428
Query: 580 LCLSKNIIF 588
L L +++
Sbjct: 429 LYLLSRVVW 437
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 39 AFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-E 95
AFL + K FP HTWLPD+ +E PT A ++I A+ M+ G + R S P+F +
Sbjct: 215 AFLAMFVAFAVKIPMFPFHTWLPDAHVEAPT-AGSVILASIMLKMGAYGFLRFSLPMFPD 273
Query: 96 LSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVS 152
S+ +IL + I + + + Q D+K++IAYS++S +G +T+G+ V+ +
Sbjct: 274 ASHFFAPMILTLSVIAIIWGAFMALAQEDMKKLIAYSSVSHMGVVTLGIFVANTQGIEGA 333
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
+ ++ H LFL G ++ + H++ + GGL K MP+ +I LS + P
Sbjct: 334 LMQMLNHGITTGALFLCIG-VLYDRSHSRQLSEYGGLAKQMPVYSTLLVIFALSSLALP 391
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 150/314 (47%), Gaps = 31/314 (9%)
Query: 585 NIIFVLGQMI-MISGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGIL 641
N++ + G MI + + + Y+ E M + + ++I N I+ AAIK+F+ +
Sbjct: 121 NLLVLEGAMIGVFCATDFVLFYVFWEAMLIPMYLIIGVWGGPNRIY---AAIKFFLYTLA 177
Query: 642 SSGFMLYGISILYGITGTLELQSIFNVIKLN--NINCSVLALSLLLIIVGLSFKLGISPF 699
S +L I LY + G F++ +L+ + S L+ L + V + K+ + PF
Sbjct: 178 GSLLLLVAIIALYFVGG-----HTFDIARLSGQHYGMSFQILAFLAMFVAFAVKIPMFPF 232
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIF 755
H W+PD + A +++L++ + L + Y L + LP+ + + ++L L++
Sbjct: 233 HTWLPDAHVEAPTAGSVILAS---IMLKMGAYGFL-RFSLPMFPDASHFFAPMILTLSVI 288
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITY 815
++I G A+ Q + K++IAYSS++HMG++ I T + L ++ +
Sbjct: 289 AIIWGAFMALAQEDMKKLIAYSSVSHMGVVTLGIFVANT--------QGIEGALMQMLNH 340
Query: 816 IFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYA 875
F I +L + + ++ +L + GL ++ P + +++IF S P T F
Sbjct: 341 GITTGALFLCIGVLYDRSHSR--QLSEYGGLAKQMPVYSTLLVIFALSSLALPGTNSFVG 398
Query: 876 KFFIFEKIFETQKI 889
+F + F+T +
Sbjct: 399 EFLVLIGSFKTHAV 412
>gi|421476552|ref|ZP_15924429.1| NADH dehydrogenase subunit M [Burkholderia multivorans CF2]
gi|400228088|gb|EJO58045.1| NADH dehydrogenase subunit M [Burkholderia multivorans CF2]
Length = 557
Score = 356 bits (914), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 180/410 (43%), Positives = 287/410 (70%), Gaps = 12/410 (2%)
Query: 188 GLYKYMPITCITSLIGLLSLVGA--PFFSGFYSKDKKKIWID------YFNIYYFLGIDG 239
G +++ T + +LIG ++ + A P +GF +++ F + G+DG
Sbjct: 73 GSDQHLQRTRLIALIGAIAGLAAVVPIVAGFDPHSAAMQFVESRNGLSAFGAGWRTGVDG 132
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
SLW + LTAF TL++++ S + ++A+Y ++FLILSGL+IG F A DG+LF+IFFEA
Sbjct: 133 ASLWLVVLTAFTTLVVVVASWQAVTVRVAQYYASFLILSGLMIGVFVAQDGLLFFIFFEA 192
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI 358
TLIP++++IGTWG +R YAA+KFF + GSLL+L++M+YLY S+ +F++ +W L +
Sbjct: 193 TLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLLMAMLYLYAKSH-TFDMAAWRTLQL 251
Query: 359 TKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS 418
Q+ +F+ FF AFA+K+P+WP+HTWL D + + T +++LA MLKLG YG LRF+
Sbjct: 252 GFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGATGAALMLA--MLKLGGYGFLRFA 309
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
LPI PDAS++F+ +I LSL +I+Y SL+A+ Q D KL+AYS++AHMG VTLG+F+ +
Sbjct: 310 LPITPDASHFFAPAVIALSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNR 369
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLAN 538
I ++GAI+Q++S+ ++ AM + L ++ K R ++ +GG+ + +P F++F ++F++AN
Sbjct: 370 IGVEGAIVQLVSYGFVAGAMLLCASVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMAN 429
Query: 539 CSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEFM+I+ A++ NF IG + LIFSA+Y+L + K +++
Sbjct: 430 VGLPGTSGFVGEFMVIMGAIRVNFWIGAGAALTLIFSASYTLWMLKRVVW 479
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 50/206 (24%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLL-----------LSTTPKLSLFVIIYRLLIKC 737
K+ + P H W+ DVY GA++++ +L L TP S F
Sbjct: 270 KVPMWPVHTWLRDVYTDGATGAALMLAMLKLGGYGFLRFALPITPDASHF---------- 319
Query: 738 LLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
P VI L++F+++ ++ A+ Q +F +++AYS++AHMG++
Sbjct: 320 FAPAVIA-------LSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTL---------- 362
Query: 798 NLIIFN--SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD--ELDIFIGLHQRNPWC 853
L +FN + + +++Y F G ++L + ++T E+ + G+ P
Sbjct: 363 GLFLFNRIGVEGAIVQLVSYGFVA----GAMLLCASVLVDRTKQREMTAYGGVASAMPRF 418
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFI 879
A+ ++F + G P T GF +F +
Sbjct: 419 AMFAVLFAMANVGLPGTSGFVGEFMV 444
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGA 109
K +P+HTWL D +AL+ A M+ G + R F L T + F A
Sbjct: 270 KVPMWPVHTWLRDVYTDGATGAALMLA--MLKLGGYGFLR----FALPITPDASHFFAPA 323
Query: 110 ITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLM 157
+ A + LL + Q D +++AYST++ +G +T+GL GV +I L+
Sbjct: 324 VIALSLFAIVYASLLALAQTDFGKLLAYSTVAHMGIVTLGLFLFNRIGVEG---AIVQLV 380
Query: 158 THAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFY 217
++ F + L A S++++ +++ GG+ MP + +++ ++ VG P SGF
Sbjct: 381 SYGFVAGAMLLCA-SVLVDRTKQREMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGFV 439
Query: 218 SK 219
+
Sbjct: 440 GE 441
>gi|374092094|gb|AEY83711.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Scapania
nemorea]
Length = 437
Score = 356 bits (914), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 261/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++ + +
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILSISF 150
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GS+I
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSLI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A +LI A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSLILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 303 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 16/291 (5%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I + TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILSISFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+LQ ++ + L + S K+ + P H+W+P+ + A +L+L+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSLILA 210
Query: 720 -TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + + R I + + + L++ ++I +++ I Q + K++IAYSS
Sbjct: 211 GILLKLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYSS 269
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD 838
+AHM + + S+ I GL + + +F +GA L + +KT
Sbjct: 270 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR--HKTR 319
Query: 839 ELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ + GL P + I + F + P T F +F I F+ +
Sbjct: 320 IVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|393725286|ref|ZP_10345213.1| NADH-quinone oxidoreductase subunit M [Sphingomonas sp. PAMC 26605]
Length = 509
Score = 356 bits (913), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 257/355 (72%), Gaps = 2/355 (0%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
LG+DG +L + L+ F+ I I S + I+K++ EYM+AFLI L+IG F A D LFY
Sbjct: 74 LGLDGFALLLVMLSVFLMPICIGASWVAIEKRVQEYMAAFLITEVLMIGTFAAQDLFLFY 133
Query: 294 IFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW 353
IFFEA LIP+++IIG WGG+NR YA+ KFFLYTL+GSLLML++M+++ + S +I +
Sbjct: 134 IFFEAGLIPMYLIIGIWGGANRIYASYKFFLYTLLGSLLMLVAMLWMVNFAGTS-DIPTL 192
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
Q WL++ FF +FA+K+P+WP HTWLPDAHV+APT GSVILA ++LKLG YG
Sbjct: 193 LNTDFPVQVQTWLWLAFFASFAVKMPMWPFHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 252
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
LRFSLP+FP+AS + LI+ LS +++IY SL+A+VQ D+KKLIAYSS+AHM VT+G+
Sbjct: 253 FLRFSLPMFPEASAQLTWLILALSAVAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGL 312
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
F + I+GA+I M+SH L+S+A+F+ +G +Y+++ TR IS +GG+ +P +++ F+
Sbjct: 313 FAFNRQGIEGAMIVMLSHGLVSAALFLCVGVIYDRLHTREISRYGGLAINMPRYALLFLF 372
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++A+ LPGTSGF+GEF+ + + + +L +T +I AAY L L + ++F
Sbjct: 373 FTMASIGLPGTSGFVGEFLSLAGTYRVSTTATLLCTTGIILGAAYMLYLYRRVVF 427
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ +IL
Sbjct: 216 KMPMWPFHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPEASAQLTWLILA 274
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ A+ + L+ ++Q+D+K++IAYS+++ + +T+GL G+ ++ +++H
Sbjct: 275 LSAVAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGIEG---AMIVMLSHG 331
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + L ++ +G P SGF +
Sbjct: 332 LVSAALFLCVG-VIYDRLHTREISRYGGLAINMPRYALLFLFFTMASIGLPGTSGFVGE 389
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 137/310 (44%), Gaps = 52/310 (16%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F++ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 113 FLITEVLMIGTFAAQDLFLFYIFFEAGLIPMYLIIGIWGGANRIYAS---YKFFLYTLLG 169
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ N + V L + K+ + PFH W
Sbjct: 170 SLLMLVAMLWMVNFAGTSDIPTLLN----TDFPVQVQTWLWLAFFASFAVKMPMWPFHTW 225
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV------INWQKILLIL 752
+PD + A +++L+ ++ +L ++ LP+ + W ++L L
Sbjct: 226 LPDAHVQAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPEASAQLTW--LILAL 275
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDS 807
+ ++I ++ A+ Q + K++IAYSS+AHM GL F+ I+ + ++ +
Sbjct: 276 SAVAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGIEGAMIVMLSHGLVSA 335
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
LF + I+ L T E+ + GL P AL+ + F + G
Sbjct: 336 ALFLCVGVIYDRL---------------HTREISRYGGLAINMPRYALLFLFFTMASIGL 380
Query: 868 PPTIGFYAKF 877
P T GF +F
Sbjct: 381 PGTSGFVGEF 390
>gi|399155924|ref|ZP_10755991.1| proton-translocating NADH-quinone oxidoreductase subunit M [SAR324
cluster bacterium SCGC AAA001-C10]
Length = 521
Score = 355 bits (912), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 173/373 (46%), Positives = 262/373 (70%), Gaps = 5/373 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
++ WI FNI YFLG+DGL+L+F + FIT + +L S ++ K ++ L+L +
Sbjct: 68 ERIPWITQFNIEYFLGLDGLNLFFFLIITFITPLALLGSWNVAKSNWQFQIQMLLLQIGM 127
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY- 339
+G F A+D +LFY+FFE L+P++++IG WGG NR YA IKFF+YT++GSLLMLIS++Y
Sbjct: 128 LGCFAAMDVVLFYVFFEVMLVPMYLLIGIWGGPNRLYATIKFFIYTMLGSLLMLISLLYT 187
Query: 340 --LYYISNK--SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+Y N SF +L W+ + I Q WLF+ F +AFA+KIP++P+HTWLPDAH EAP
Sbjct: 188 ANIYLDLNGAWSFRVLDWYGMQIPPETQFWLFLGFAVAFAVKIPLFPLHTWLPDAHYEAP 247
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSV LAA+MLK G YG LRF++PIFP A + + + + L+LI IIY L+AMVQ IK
Sbjct: 248 TAGSVQLAAVMLKFGPYGFLRFAMPIFPAAVFDLTPIFMVLALIGIIYGGLVAMVQPQIK 307
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
+LIAYSS+AHMG++ LG+F L + G+ IQMI+HA+++ A+F+++G +Y + T+ IS
Sbjct: 308 RLIAYSSVAHMGYIVLGLFALNIQGLSGSWIQMINHAIVTGALFLTVGMIYERTHTQEIS 367
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+GG+ + +P F+VF + FS+A+ LPG +GF+GE + ++ A + N G++ + ++ +
Sbjct: 368 AYGGVAHTMPKFAVFLVFFSMASVGLPGLNGFVGEVLTMIGAARVNIWYGIVAAFGVLVA 427
Query: 576 AAYSLCLSKNIIF 588
A Y L + + ++F
Sbjct: 428 AIYMLWMVQRVLF 440
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 8/214 (3%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
WY + FL + K FPLHTWLPD+ E PT S + AA M+ G
Sbjct: 205 WYGMQIPPETQFWLFLGFAVAFAVKIPLFPLHTWLPDAHYEAPTAGSVQL-AAVMLKFGP 263
Query: 85 FMITRMS-PLFELSNTALSIILFIGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R + P+F + L+ I + A+ + GL+ ++Q IKR+IAYS+++ +GY+ +
Sbjct: 264 YGFLRFAMPIFPAAVFDLTPIFMVLALIGIIYGGLVAMVQPQIKRLIAYSSVAHMGYIVL 323
Query: 143 G---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCIT 199
G L + + S ++ HA LFL+ G +I H Q+I GG+ MP +
Sbjct: 324 GLFALNIQGLSGSWIQMINHAIVTGALFLTVG-MIYERTHTQEISAYGGVAHTMPKFAVF 382
Query: 200 SLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYY 233
+ ++ VG P +GF + I NI+Y
Sbjct: 383 LVFFSMASVGLPGLNGFVGEVLTMIGAARVNIWY 416
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 121/285 (42%), Gaps = 29/285 (10%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ + L+ + L + I N ++ A IK+FI +L S ML IS+LY L
Sbjct: 138 LFYVFFEVMLVPMYLLIGIWGGPNRLY---ATIKFFIYTMLGSLLML--ISLLYTANIYL 192
Query: 661 ELQSIFNVIKLNNINCSVLALSLLLIIVGLSF----KLGISPFHMWVPDVY-----QGAS 711
+L ++ L+ + + + +G + K+ + P H W+PD + G+
Sbjct: 193 DLNGAWSFRVLDWYGMQIPPETQFWLFLGFAVAFAVKIPLFPLHTWLPDAHYEAPTAGSV 252
Query: 712 IIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFK 771
+ ++L P L R + V + I ++LA+ +I G + A+ Q K
Sbjct: 253 QLAAVMLKFGPYGFL-----RFAMPIFPAAVFDLTPIFMVLALIGIIYGGLVAMVQPQIK 307
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
R+IAYSS+AHMG ++ + ++ +I + F + ++
Sbjct: 308 RLIAYSSVAHMGYIVLGLFALNI--------QGLSGSWIQMINHAIVTGALFLTVGMIYE 359
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
T T E+ + G+ P A+ ++ F + G P GF +
Sbjct: 360 RT--HTQEISAYGGVAHTMPKFAVFLVFFSMASVGLPGLNGFVGE 402
>gi|84872473|gb|ABC67282.1| NADH dehydrogenase subunit 4 [Sphagnum fallax]
Length = 418
Score = 355 bits (912), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 260/367 (70%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI++++GIDG+SL+F+ LT F+ I IL+ IK EYM AFLI +I
Sbjct: 4 WLPYPNIHFYIGIDGISLFFVVLTTFLIPICILVGRSSIKSYKREYMIAFLICESFMIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
FC LD +LFY+FFE+ LIP+ IIIG WG R AA +FFLYTL+GS+ ML++++++
Sbjct: 64 FCMLDLLLFYVFFESVLIPMSIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIPS 123
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ IL + S + QI L+I FF +F++K+P+ P H WLP+AHVEAPT GSVI
Sbjct: 124 QTGSTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMIPFHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ + LS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFVYALSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L +IF
Sbjct: 362 LYNRVIF 368
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 157 KVPMIPFHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFVYA 215
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 216 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 275
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MP+
Sbjct: 276 SALFLCVGALYDRHK-TRLVKYYGGLVSTMPM 306
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 149/347 (42%), Gaps = 27/347 (7%)
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLG 607
I F ++L+ CI V S+ + Y + F++ M+ +LL Y+
Sbjct: 19 ISLFFVVLTTFLIPICILVGRSSIKSYKREYMIAFLICESFMIAVFCML---DLLLFYVF 75
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I + TG+ +LQ
Sbjct: 76 FESVLIPMSIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIPSQTGSTDLQ---- 131
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTP 722
++ + L + S K+ + PFH+W+P+ + G+ I+ +LL
Sbjct: 132 ILLTTEFSERRQILLWIAFFASFSVKVPMIPFHIWLPEAHVEAPTAGSVILAGILL---- 187
Query: 723 KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM 782
KL + + R I + + + L++ ++I +++ I Q + K++IAYSS+AHM
Sbjct: 188 KLGTYGFL-RFSIPMFPEATLYFTPFVYALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHM 246
Query: 783 GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI 842
+ + S+ I GL + + +F +GA L + +KT +
Sbjct: 247 NFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR--HKTRLVKY 296
Query: 843 FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ GL P + I + F + P T F +F I F+ +
Sbjct: 297 YGGLVSTMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|374092088|gb|AEY83708.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Mylia
taylorii]
Length = 418
Score = 355 bits (911), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 182/367 (49%), Positives = 262/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 12 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 71
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+F E+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 72 FCSLDLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 131
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 132 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 189
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I S+I+IIY SL + QID+KK+IAYS
Sbjct: 190 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYASSVIAIIYTSLTTIRQIDLKKIIAYS 249
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 250 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 309
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 310 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 369
Query: 582 LSKNIIF 588
++F
Sbjct: 370 PYNRVVF 376
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 165 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 223
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
++ A + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 224 SSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 283
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 284 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 314
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ LE + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 76 DLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 135
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 136 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 191
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + ++ ++I +++ I Q + K++I
Sbjct: 192 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYASSVIAIIYTSLTTIRQIDLKKII 246
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 247 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 296
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 297 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 351
>gi|374092082|gb|AEY83705.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Herbertus
sendtneri]
Length = 436
Score = 355 bits (911), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 263/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 30 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 89
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 90 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 149
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 150 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 207
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 208 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 267
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH +SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 268 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALFLCVGALYDRHKTRIVKYYGGLV 327
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+ AN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 328 STMPIFSTIFLFFTPANMSLPGTSSFIGEFLILVGAFQRNSLVASLAALGMILGAAYSLW 387
Query: 582 LSKNIIF 588
L ++F
Sbjct: 388 LYNRVVF 394
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 241
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVS 301
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 302 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 332
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 94 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 153
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 154 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 209
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 210 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 264
Query: 775 AYSSIAHMGLMLFSIISI 792
AYSS+AHM + + S+
Sbjct: 265 AYSSVAHMNFVTIGMFSL 282
>gi|85708740|ref|ZP_01039806.1| NADH dehydrogenase subunit M [Erythrobacter sp. NAP1]
gi|85690274|gb|EAQ30277.1| NADH dehydrogenase subunit M [Erythrobacter sp. NAP1]
Length = 513
Score = 355 bits (911), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 257/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LGIDG++L I L+ F+ I IL S + I K++ EYM+AFL + L+IG F A D L
Sbjct: 70 YALGIDGIALMLIMLSVFLMPICILASWEGITKRVGEYMAAFLFMEVLMIGTFAAQDIFL 129
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYI FEA LIP+++IIG WGG NR YA+ KFFLYTL+GS+LML++M ++ + S+ I
Sbjct: 130 FYIMFEAGLIPMYLIIGVWGGDNRIYASYKFFLYTLLGSVLMLVAMFWMVAEAGTSY-IP 188
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q WL++ FF +FA+K+P+WP HTWLPDAHV+APT GSVILA ++LKLG
Sbjct: 189 ALMEYPFPGGAQTWLWLAFFASFAVKVPMWPFHTWLPDAHVQAPTAGSVILAGVLLKLGG 248
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS F+ + LS+I+++Y SL+A+VQ D+KKLIAYSS+AHM VT+
Sbjct: 249 YGFIRFSLPMFPEASADFAWFVFILSMIAVVYTSLVALVQADMKKLIAYSSVAHMAIVTV 308
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F ++GA+I M+SH L+S A+F+ +G +Y+++ TR I +GG+ +P++++FF
Sbjct: 309 GLFAFNVQGLEGAMIVMLSHGLVSGALFLCVGVIYDRLHTREIERYGGLSINMPYYAIFF 368
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTSGF+GEF+ + + + + ++ +T +I AAY L L + + F
Sbjct: 369 LLFTMASIGLPGTSGFVGEFLSLAGIYQTSSLVALICTTGIILGAAYMLYLYRRVAF 425
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ + +FI
Sbjct: 214 KVPMWPFHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGFIRFSLPMFPEASADFAWFVFI 272
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
I + L+ ++Q D+K++IAYS+++ + +TVGL V ++ +++H
Sbjct: 273 LSMIAVVYTSLVALVQADMKKLIAYSSVAHMAIVTVGLFAFNVQGLEGAMIVMLSHGLVS 332
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP I L+ ++ +G P SGF +
Sbjct: 333 GALFLCVG-VIYDRLHTREIERYGGLSINMPYYAIFFLLFTMASIGLPGTSGFVGE 387
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 122/286 (42%), Gaps = 29/286 (10%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + N I++S K+F+ +L S ML + + GT + ++
Sbjct: 138 LIPMYLIIGVWGGDNRIYAS---YKFFLYTLLGSVLMLVAMFWMVAEAGTSYIPALMEYP 194
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFV 728
+ L + K+ + PFH W+PD + Q + +L KL +
Sbjct: 195 FPGGAQTWLW----LAFFASFAVKVPMWPFHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 250
Query: 729 IIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----G 783
I R + ++ + IL++ +++ ++ A+ Q + K++IAYSS+AHM G
Sbjct: 251 FI-RFSLPMFPEASADFAWFVFILSMIAVVYTSLVALVQADMKKLIAYSSVAHMAIVTVG 309
Query: 784 LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
L F++ ++ + ++ LF + I+ L T E++ +
Sbjct: 310 LFAFNVQGLEGAMIVMLSHGLVSGALFLCVGVIYDRL---------------HTREIERY 354
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
GL P+ A+ ++F + G P T GF +F I++T +
Sbjct: 355 GGLSINMPYYAIFFLLFTMASIGLPGTSGFVGEFLSLAGIYQTSSL 400
>gi|374092068|gb|AEY83698.1| NADH dehydrogenase subunit 4, partial (mitochondrion)
[Anastrophyllum minutum]
Length = 410
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 260/367 (70%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 4 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++ +
Sbjct: 64 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFISF 123
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F I+G+I+ M+SH +SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 242 SVAHMNFVTIGMFSPNIQGIEGSILLMLSHGPVSSALFLCVGALYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 157 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 215
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G+ + SI +++H
Sbjct: 216 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSPNIQGIEGSILLMLSHGPVS 275
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 276 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 306
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I + TGT
Sbjct: 68 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFISFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 184 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHM 782
AYSS+AHM
Sbjct: 239 AYSSVAHM 246
>gi|328953781|ref|YP_004371115.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Desulfobacca acetoxidans DSM 11109]
gi|328454105|gb|AEB09934.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Desulfobacca acetoxidans DSM 11109]
Length = 512
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 171/375 (45%), Positives = 271/375 (72%), Gaps = 7/375 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
++ W + I Y++GIDG+SL + LT FIT I +L DI+ K+ E+M L L
Sbjct: 64 ERYSWFPAYGISYYIGIDGISLLLVLLTTFITPICVLACWEDIQSKVKEFMICLLFLQTG 123
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGG-SNRSYAAIKFFLYTLMGSLLMLISMI 338
+IG F +LD LFYIF+E LIP++++IG WG + R YAA+KFF++T++GSLLML++++
Sbjct: 124 MIGVFVSLDLFLFYIFWEIMLIPMYLLIGVWGNPARRIYAAVKFFIFTMVGSLLMLVAIL 183
Query: 339 YLYYISNK-----SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
LY+ + K +F++L + L I + Q W+F+ F +AFAIK+P++P+HTWLPDAH E
Sbjct: 184 VLYFYNYKVTGVYTFDLLKMYGLQIPFMMQFWMFLAFGLAFAIKVPMFPVHTWLPDAHTE 243
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILAA++LK+G YG LRF++P+FPDA++YF L L++I I+Y +L+++VQ+D
Sbjct: 244 APTVGSVILAAVLLKMGTYGFLRFNMPMFPDAAWYFVPLFSILAVIGIVYGALVSLVQVD 303
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+K+L+A+SS++H+GFV LG+F T +QG IIQMI+H L + A+F+ +G +Y + TR+
Sbjct: 304 LKRLVAFSSVSHLGFVMLGLFTYTMAGVQGGIIQMINHGLSTGALFLIVGMVYERRHTRM 363
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I++FGG+ V+P ++ F++ +L++ LPG +GF+GE++I+L A K N + ++ +I
Sbjct: 364 IADFGGLSKVMPVYATIFMVVTLSSIGLPGLNGFVGEYLILLGAFKTNKVFAIFAASGVI 423
Query: 574 FSAAYSLCLSKNIIF 588
F+AAY L + + ++F
Sbjct: 424 FAAAYMLWMFQRVMF 438
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 67/278 (24%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMA------------ 49
S +LF ++ WEI+ + YLLIG W + I A +K F+ +G++
Sbjct: 130 SLDLFLFYIFWEIMLIPMYLLIGVWGNPARRIYAAVKFFIFTMVGSLLMLVAILVLYFYN 189
Query: 50 -------------------------------------KSAQFPLHTWLPDS-MEGPTPAS 71
K FP+HTWLPD+ E PT S
Sbjct: 190 YKVTGVYTFDLLKMYGLQIPFMMQFWMFLAFGLAFAIKVPMFPVHTWLPDAHTEAPTVGS 249
Query: 72 ALIHAATMVTAGIFMITRMS-PLFELSN----TALSIILFIGAITAFFMGLLGIIQNDIK 126
++ AA ++ G + R + P+F + SI+ IG + + L+ ++Q D+K
Sbjct: 250 VIL-AAVLLKMGTYGFLRFNMPMFPDAAWYFVPLFSILAVIGIV---YGALVSLVQVDLK 305
Query: 127 RIIAYSTLSQLGYMTVGLGVSAYTVS-----IFHLMTHAFFKALLFLSAGSIIINMKHNQ 181
R++A+S++S LG+ V LG+ YT++ I ++ H LFL G ++ +H +
Sbjct: 306 RLVAFSSVSHLGF--VMLGLFTYTMAGVQGGIIQMINHGLSTGALFLIVG-MVYERRHTR 362
Query: 182 DIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
I + GGL K MP+ ++ LS +G P +GF +
Sbjct: 363 MIADFGGLSKVMPVYATIFMVVTLSSIGLPGLNGFVGE 400
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 20/296 (6%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+L Y+ E+M + + +LI N AA+K+FI ++ S ML I +LY
Sbjct: 132 DLFLFYIFWEIMLIPMYLLIGVWGNPARRIYAAVKFFIFTMVGSLLMLVAILVLYFYNYK 191
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLL 717
+ F+++K+ + + + + GL+F K+ + P H W+PD + A + +++
Sbjct: 192 VTGVYTFDLLKMYGLQIPFMMQFWMFLAFGLAFAIKVPMFPVHTWLPDAHTEAPTVGSVI 251
Query: 718 LSTTPKLSLFVIIYRLLIKCLLPLVIN--WQKILL--ILAIFSLIIGNVSAITQYNFKRM 773
L+ L + ++ +P+ + W + L ILA+ ++ G + ++ Q + KR+
Sbjct: 252 LAAV----LLKMGTYGFLRFNMPMFPDAAWYFVPLFSILAVIGIVYGALVSLVQVDLKRL 307
Query: 774 IAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNT 833
+A+SS++H+G ++ + + + I + GL +F I+G ++ + +T
Sbjct: 308 VAFSSVSHLGFVMLGLFTYTMAGVQGGIIQMINHGL--STGALFLIVG----MVYERRHT 361
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
D F GL + P A I M+ S G P GF ++ I F+T K+
Sbjct: 362 RMIAD----FGGLSKVMPVYATIFMVVTLSSIGLPGLNGFVGEYLILLGAFKTNKV 413
>gi|38638282|ref|NP_943685.1| NADH dehydrogenase subunit 4 [Chara vulgaris]
gi|32966596|gb|AAP92179.1| NADH dehydrogenase subunit 4 [Chara vulgaris]
Length = 496
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 261/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++G+DG+SL+F+ LT F+ I +L+ I+ EYM AFL+L +I
Sbjct: 74 WLPYSNINFYIGLDGISLFFVVLTTFLIPICMLVGWSSIQNYKKEYMIAFLVLEAFMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIRAAYQFFLYTLLGSVFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + + L + +I AAYS+
Sbjct: 372 STMPIFSTIFLFFTLANISLPGTSSFIGEFLILVGAFQAAPNVATLAAIGMILGAAYSIW 431
Query: 582 LSKNIIF 588
L ++F
Sbjct: 432 LYNRVVF 438
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 286 LSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MPI
Sbjct: 346 SALFLCVGALYDRHK-TRLVKYYGGLVSTMPI 376
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 24/291 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIRAAYQFFLYTLLGSVFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + + K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ + Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTLRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
+KT + + GL P + I + F + P T F +F I F+
Sbjct: 359 HKTRLVKYYGGLVSTMPIFSTIFLFFTLANISLPGTSSFIGEFLILVGAFQ 409
>gi|189426175|ref|YP_001953352.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Geobacter lovleyi SZ]
gi|189422434|gb|ACD96832.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Geobacter lovleyi SZ]
Length = 535
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/415 (45%), Positives = 287/415 (69%), Gaps = 18/415 (4%)
Query: 187 GGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKI-----WIDY--FNIYYFLGIDG 239
G L +T + + I L P +G+ + + + WI F + Y +GIDG
Sbjct: 28 GALRSVALVTTVVTFIASL-----PILTGYQTNAEYQFVENVPWIAAGPFAMRYNIGIDG 82
Query: 240 LSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEA 298
+SLW + LT FI I +L + ++ K+ EYM LIL ++GAF +LD LFYIF+E
Sbjct: 83 ISLWLVILTTFIMPIAVLSTWTAVEDKVKEYMICLLILETAMLGAFISLDLFLFYIFWEL 142
Query: 299 TLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKS----FNILSWH 354
LIP++ +IG WGG NR YA +KFF+YTL+GSLLML+++IYLY++ K+ F+++ +
Sbjct: 143 MLIPMYFMIGIWGGKNRLYATVKFFIYTLVGSLLMLVALIYLYFLGTKTGITDFSLVHFF 202
Query: 355 QLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGL 414
L I Q WLF F +AFAIK+P++P+HTWLPDAH EAPT GSVILAAIMLK+G YG
Sbjct: 203 DLKIDPATQTWLFAAFALAFAIKVPMFPVHTWLPDAHTEAPTAGSVILAAIMLKMGTYGF 262
Query: 415 LRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIF 474
+RF++P+FP+A++ F+ LI TL++I IIY +L+AMVQ D+KKL+AYSS+AH+GFV LG+F
Sbjct: 263 IRFAMPLFPEATHQFTPLIATLAVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGLF 322
Query: 475 MLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIF 534
L + + GA++Q ++H + + A+F+ +GF+Y + TRLI++FGG+ +P F+V F+I
Sbjct: 323 ALNEQGVTGALLQNLNHGISTGALFLIVGFIYERRHTRLITDFGGLSKQMPIFAVIFMIV 382
Query: 535 SLANCSLPGTSGFIGEFMIILSAVKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
+L++ +LPGT+GF+GEF+I++ + + ++ S+ +IF+A Y L + + ++F
Sbjct: 383 TLSSVALPGTNGFVGEFLILVGGFESSLRWWTIVASSGVIFAAVYMLWMFQRVMF 437
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K FP+HTWLPD+ E PT A ++I AA M+ G + R + PLF E ++ +I
Sbjct: 225 KVPMFPVHTWLPDAHTEAPT-AGSVILAAIMLKMGTYGFIRFAMPLFPEATHQFTPLIAT 283
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K+++AYS+++ LG++ +G L T ++ + H
Sbjct: 284 LAVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGLFALNEQGVTGALLQNLNHGIST 343
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G I +H + I + GGL K MPI + +I LS V P +GF +
Sbjct: 344 GALFLIVG-FIYERRHTRLITDFGGLSKQMPIFAVIFMIVTLSSVALPGTNGFVGE 398
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 144/323 (44%), Gaps = 33/323 (10%)
Query: 578 YSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKY 635
Y +CL +LG I + +L Y+ ELM + + +I KN ++ A +K+
Sbjct: 113 YMICLLILETAMLGAFISL---DLFLFYIFWELMLIPMYFMIGIWGGKNRLY---ATVKF 166
Query: 636 FILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN--INCSVLALSLLLIIVGLSFK 693
FI ++ S ML + LY + GT + F+++ + I+ + + + K
Sbjct: 167 FIYTLVGSLLMLVALIYLYFL-GTKTGITDFSLVHFFDLKIDPATQTWLFAAFALAFAIK 225
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLIL 752
+ + P H W+PD + A +++L+ K+ + I R + + ++ L
Sbjct: 226 VPMFPVHTWLPDAHTEAPTAGSVILAAIMLKMGTYGFI-RFAMPLFPEATHQFTPLIATL 284
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG---- 808
A+ +I + A+ Q + K+++AYSS+AH+G ++ + ++ + + + G
Sbjct: 285 AVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGLFALNEQGVTGALLQNLNHGISTG 344
Query: 809 -LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
LF I+ +I+ + +T TD F GL ++ P A+I MI S
Sbjct: 345 ALFLIVGFIYE-----------RRHTRLITD----FGGLSKQMPIFAVIFMIVTLSSVAL 389
Query: 868 PPTIGFYAKFFIFEKIFETQKIW 890
P T GF +F I FE+ W
Sbjct: 390 PGTNGFVGEFLILVGGFESSLRW 412
>gi|421587457|ref|ZP_16032858.1| NADH dehydrogenase I subunit M [Rhizobium sp. Pop5]
gi|403708067|gb|EJZ22881.1| NADH dehydrogenase I subunit M [Rhizobium sp. Pop5]
Length = 491
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/370 (46%), Positives = 256/370 (69%), Gaps = 7/370 (1%)
Query: 197 CITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
CI L+G + A F+ + + W+ I Y LGIDG+S F+ LTA + I +
Sbjct: 44 CIAMLVGFDTTTHAMQFT------EMRPWVPALGIKYALGIDGISALFVFLTALLGSICV 97
Query: 257 LIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L S + I +K+ E+M L + L++G FCALD LFY+F+EA LIP+++IIG WGG R
Sbjct: 98 LASWVAIDRKVKEFMICLLSMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGR 157
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YAAIKFFLYTL GSLL LI +I LY+ ++F+IL+ + ++ Q WLF F IAFA
Sbjct: 158 VYAAIKFFLYTLAGSLLFLIGVIVLYFYGGRTFDILTLTEQDLSFRIQSWLFFAFLIAFA 217
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+ P+HTWLPDAHV+APT GS+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++
Sbjct: 218 VKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS+++I+Y L+A+ Q D+KKL+AYSSI+HMGFVTLG+F L ++G I+QM +H + +
Sbjct: 278 LSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGVFALNLRGLEGGILQMFNHGVTT 337
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIIL 555
A+F+ +G +Y + TR I+++GG++ V P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 338 GALFLFVGLIYERTHTRSIADYGGLMKVAPVYTTFLALFTLSSMALPGTNSFVGELLVLS 397
Query: 556 SAVKFNFCIG 565
N G
Sbjct: 398 GGFAANLVAG 407
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ + + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGVFALNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIADYGGLMKVAPV 368
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AAIK+F+ + S L G+ +LY G F+++ L + S S L ++
Sbjct: 160 AAIKFFLYTLAGSLLFLIGVIVLYFYGG-----RTFDILTLTEQDLSFRIQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASMYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L++ +++ G + A+ Q + K+++AYSSI+HMG + + ++
Sbjct: 274 LMLALSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGVFAL 318
>gi|374092080|gb|AEY83704.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Harpanthus
flotovianus]
Length = 437
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 262/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ L +K EYM AFLI L+I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGLYSVKSYKKEYMIAFLICESLLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
F +LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML+++ ++ +
Sbjct: 91 FRSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAISFISF 150
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AH+ FVT+G+F L I+G+I+ M+SH +SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHLNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ L ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHLNFVTIGMFSLNIQGIEGSILLMLSHGPVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 303 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 129/300 (43%), Gaps = 34/300 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML IS + TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAISFISFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
AYSS+AH+ G+ +I I+ S ++ S LF + ++
Sbjct: 266 AYSSVAHLNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALFLCVGALY------------ 313
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 314 ---DRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|73540675|ref|YP_295195.1| NADH dehydrogenase subunit L [Ralstonia eutropha JMP134]
gi|72118088|gb|AAZ60351.1| NADH dehydrogenase subunit L [Ralstonia eutropha JMP134]
Length = 695
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/274 (65%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR
Sbjct: 146 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAY 205
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 206 SGSMNYSDVFAAREKLATVIFPGTDWMMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 265
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS +L IGAITA FMG LGIIQNDIKR
Sbjct: 266 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFVLVIGAITALFMGFLGIIQNDIKR 325
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 326 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 385
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 386 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 419
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 239 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 296
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 297 TALS-FVLVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 352
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + I N GG+ +P + ++ SLA P S
Sbjct: 353 HLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLALIGTPFFS 412
Query: 546 GFIGEFMIILSAVK 559
GF + II + +
Sbjct: 413 GFYSKDSIIEAVAE 426
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 142/311 (45%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 136 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANLKAFLVNRVGD 192
Query: 644 -GFMLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L +G++ +F + + +L ++ + + +G K
Sbjct: 193 FGFIL-GIGLLLAYSGSMNYSDVFAAREKLATVIFPGTDWMMLTVACICLFIGAMGKSAQ 251
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 252 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFVLVIGAIT 309
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 310 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF- 365
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 366 ---LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 417
Query: 877 FFIFEKIFETQ 887
I E + E+
Sbjct: 418 DSIIEAVAESH 428
>gi|405379776|ref|ZP_11033623.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF142]
gi|397323806|gb|EJJ28197.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF142]
Length = 491
Score = 354 bits (909), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/359 (47%), Positives = 254/359 (70%), Gaps = 7/359 (1%)
Query: 197 CITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
CI +L+G + A F+ + + W+ I Y LGIDG+S F+ LTA + I +
Sbjct: 44 CIATLVGFDTTTHAMQFT------ETRPWVPALGINYALGIDGISALFVFLTALLGSICV 97
Query: 257 LIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L S + I +K+ E+M L + L++G FCALD LFY+F+EA LIP+++IIG WGG R
Sbjct: 98 LASWIAIDRKVKEFMICLLSMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGDGR 157
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YAAIKFFLYTL GSLL LI +I LY+ ++F+IL+ + + Q WLF F IAFA
Sbjct: 158 VYAAIKFFLYTLAGSLLFLIGVIVLYFYGGRTFDILALTEQDLPFRIQSWLFFAFLIAFA 217
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+ P+HTWLPDAHV+APT GS+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++
Sbjct: 218 VKVPMVPLHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS+++I+Y L+A+ Q D+KKL+AYSSI+HMGFVTLGIF L ++G I+QM +H + +
Sbjct: 278 LSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGGILQMFNHGVTT 337
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
A+F+ +G +Y + TR I+++GG++ V P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 338 GALFLFVGLIYERTHTRSIADYGGLMKVAPVYTTFLALFTLSSMALPGTNSFVGELLVL 396
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K PLHTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPLHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASMYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ + + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIADYGGLMKVAPV 368
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AAIK+F+ + S L G+ +LY G F+++ L + S L ++
Sbjct: 160 AAIKFFLYTLAGSLLFLIGVIVLYFYGG-----RTFDILALTEQDLPFRIQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPLHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASMYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIK 793
++L L++ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSVLAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALN 319
>gi|15131109|emb|CAC48230.1| NADH dehydrogenase subunit 4 [Timmia megapolitana subsp. bavarica]
Length = 415
Score = 354 bits (909), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 261/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+ I IL+ IK EYM AFLI +I
Sbjct: 4 WLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ IP+FIIIG WG R AA +FFLYTL+GS+ ML++++++++
Sbjct: 64 FCMLDLLLFYVFFESVSIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAY
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYP 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH +SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALFLCVGVLYDRHKTRLVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
+IF
Sbjct: 362 PYNRVIF 368
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 156 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 214
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAY +++ + ++T+G L + SI +++H
Sbjct: 215 TLSVIAIIYTSLTTIRQIDLKKIIAYPSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPV 274
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G ++ + + ++ GGL MP+
Sbjct: 275 SSALFLCVG-VLYDRHKTRLVKYYGGLVSTMPM 306
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 34/300 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E +S+ + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 68 DLLLFYVFFESVSIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 183
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 184 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 238
Query: 775 AYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
AY S+AHM G+ +I I+ S ++ S LF + ++
Sbjct: 239 AYPSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALFLCVGVLY------------ 286
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 287 ---DRHKTRLVKYYGGLVSTMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|374092072|gb|AEY83700.1| NADH dehydrogenase subunit 4, partial (mitochondrion)
[Blepharostoma trichophyllum]
Length = 437
Score = 354 bits (908), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 262/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFIRESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++ +++
Sbjct: 91 SCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILSIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMSSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + ++ AAYSL
Sbjct: 329 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMVLGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI + +H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMSSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 303 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILSIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMSSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|385153418|ref|YP_006073021.1| nad4 gene product (mitochondrion) [Nitella hyalina]
gi|335354149|gb|AEH42836.1| NADH dehydrogenase subunit 4 (mitochondrion) [Nitella hyalina]
Length = 499
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 261/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++G+DG+SL+F+ LT F+ I +L+ I+ EYM AFL+L +I
Sbjct: 74 WLPYSNINFYIGLDGISLFFVVLTTFLIPICMLVGWSSIQNYKKEYMIAFLVLEAFMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+FFE+ LIP+F+IIG WG R AA +FFLYTL+GS+ ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFLIIGVWGSRQRKIRAAYQFFLYTLLGSVFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + + L + +I AAYS+
Sbjct: 372 STMPIFSTIFLFFTLANISLPGTSSFIGEFLILVGAFQAAPNVATLAAIGMILGAAYSIW 431
Query: 582 LSKNIIF 588
L ++F
Sbjct: 432 LYNRVVF 438
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 286 LSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MPI
Sbjct: 346 SALFLCVGALYDRHK-TRLVKYYGGLVSTMPI 376
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 24/291 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFLIIGVWGSRQRKIRAAYQFFLYTLLGSVFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + + K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ + Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTLRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGAL--------YDR 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
+KT + + GL P + I + F + P T F +F I F+
Sbjct: 359 HKTRLVKYYGGLVSTMPIFSTIFLFFTLANISLPGTSSFIGEFLILVGAFQ 409
>gi|326403102|ref|YP_004283183.1| NADH-quinone oxidoreductase subunit M [Acidiphilium multivorum
AIU301]
gi|325049963|dbj|BAJ80301.1| NADH-quinone oxidoreductase subunit M [Acidiphilium multivorum
AIU301]
Length = 505
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 258/378 (68%), Gaps = 2/378 (0%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P GF D + WI + I Y +G+DG+SL+F+ L+A +T + +L S +++ +YM
Sbjct: 59 PSVHGFQFVDSAE-WIPAYGIGYRMGVDGISLFFVALSALLTPVAVLASWRESRRVRDYM 117
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
+AFL+L + IG F ALD +LFYIFFE LIP+++IIG WGG R +AA+KFFL+TL GS
Sbjct: 118 AAFLLLETMTIGMFSALDFLLFYIFFEGVLIPMYLIIGVWGGERRIHAAVKFFLFTLAGS 177
Query: 331 LLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
L ML++++++++ + + +++ +I Q WLF+ F ++F +K +WPMHTWLPDA
Sbjct: 178 LPMLLALVWMWHHAGTT-DMVQLMHTAIAPTTQDWLFVAFLLSFGVKAAVWPMHTWLPDA 236
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
+ EAP G+++LAA++ K+G YG LRFSLP+ P A+ YF + L +I I+YIS A+
Sbjct: 237 YGEAPLPGTIMLAAVLSKMGAYGFLRFSLPMLPQATAYFEPFMFALGIIGIVYISFAALA 296
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q DIK++IAYSS+AHMG + +GIF +T I+GA+ QM+SH L+ +A+F+ +G L +
Sbjct: 297 QTDIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVSHGLVIAALFLCVGILLARGH 356
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
+ + GG+ + +P ++ F ++F +AN LPGTSGF+GE ++++ A++ NF + +L +
Sbjct: 357 SLRLDQLGGLASRMPVYATFLMLFVMANVGLPGTSGFVGEILVMIGAIQANFWVALLVGS 416
Query: 571 ALIFSAAYSLCLSKNIIF 588
+I S Y L + + ++F
Sbjct: 417 GMILSVMYMLVMIRRVLF 434
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 21/269 (7%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA+K+F+ + S ML + ++ GT ++ ++L + + L +
Sbjct: 164 HAAVKFFLFTLAGSLPMLLALVWMWHHAGTTDM------VQLMHTAIAPTTQDWLFVAFL 217
Query: 690 LSF--KLGISPFHMWVPDVYQGASIIITLLLSTT-PKLSLFVIIYRLLIKCLLPLVINWQ 746
LSF K + P H W+PD Y A + T++L+ K+ + + R + L ++
Sbjct: 218 LSFGVKAAVWPMHTWLPDAYGEAPLPGTIMLAAVLSKMGAYGFL-RFSLPMLPQATAYFE 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+ L I ++ + +A+ Q + KRMIAYSS+AHMGL++ I ++ + +F
Sbjct: 277 PFMFALGIIGIVYISFAALAQTDIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVS 336
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
GL +I +F +G ILL + D+L GL R P A +M+F+ + G
Sbjct: 337 HGL--VIAALFLCVG-----ILLARGHSLRLDQLG---GLASRMPVYATFLMLFVMANVG 386
Query: 867 FPPTIGFYAKFFIFEKIFETQKIWLLLLI 895
P T GF + + + W+ LL+
Sbjct: 387 LPGTSGFVGEILVMIGAIQA-NFWVALLV 414
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDSM-EGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K+A +P+HTWLPD+ E P P + ++ AA + G + R S P+ + +F
Sbjct: 223 KAAVWPMHTWLPDAYGEAPLPGTIML-AAVLSKMGAYGFLRFSLPMLPQATAYFEPFMFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+G I ++ + Q DIKR+IAYS+++ +G + VG+ V+ ++F +++H
Sbjct: 282 LGIIGIVYISFAALAQTDIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVSHGLVI 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G I++ H+ + +GGL MP+ ++ +++ VG P SGF +
Sbjct: 342 AALFLCVG-ILLARGHSLRLDQLGGLASRMPVYATFLMLFVMANVGLPGTSGFVGE 396
>gi|148259944|ref|YP_001234071.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Acidiphilium cryptum JF-5]
gi|338981050|ref|ZP_08632286.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Acidiphilium sp. PM]
gi|146401625|gb|ABQ30152.1| NADH dehydrogenase subunit M [Acidiphilium cryptum JF-5]
gi|338208016|gb|EGO95915.1| Proton-translocating NADH-quinone oxidoreductase, chain M
[Acidiphilium sp. PM]
Length = 505
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 258/378 (68%), Gaps = 2/378 (0%)
Query: 211 PFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYM 270
P GF D + WI + I Y +G+DG+SL+F+ L+A +T + +L S +++ +YM
Sbjct: 59 PSVHGFQFVDSAE-WIPAYGIGYRMGVDGISLFFVALSALLTPVAVLASWRESRRVRDYM 117
Query: 271 SAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGS 330
+AFL+L + IG F ALD +LFYIFFE LIP+++IIG WGG R +AA+KFFL+TL GS
Sbjct: 118 AAFLLLETMTIGMFSALDFLLFYIFFEGVLIPMYLIIGVWGGERRIHAAVKFFLFTLAGS 177
Query: 331 LLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
L ML++++++++ + + +++ +I Q WLF+ F ++F +K +WPMHTWLPDA
Sbjct: 178 LPMLLALVWMWHHAGTT-DMVQLMHTAIAPTTQDWLFVAFLLSFGVKAAVWPMHTWLPDA 236
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
+ EAP G+++LAA++ K+G YG LRFSLP+ P A+ YF + L +I I+YIS A+
Sbjct: 237 YGEAPLPGTIMLAAVLSKMGAYGFLRFSLPMLPQATAYFEPFMFALGIIGIVYISFAALA 296
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q DIK++IAYSS+AHMG + +GIF +T I+GA+ QM+SH L+ +A+F+ +G L +
Sbjct: 297 QTDIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVSHGLVIAALFLCVGILLARGH 356
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTST 570
+ + GG+ + +P ++ F ++F +AN LPGTSGF+GE ++++ A++ NF + +L +
Sbjct: 357 SLRLDQLGGLASRMPVYATFLMLFVMANVGLPGTSGFVGEILVMIGAIQANFWVALLVGS 416
Query: 571 ALIFSAAYSLCLSKNIIF 588
+I S Y L + + ++F
Sbjct: 417 GMILSVMYMLVMIRRVLF 434
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDSM-EGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K+A +P+HTWLPD+ E P P + ++ AA + G + R S P+ + +F
Sbjct: 223 KAAVWPMHTWLPDAYGEAPLPGTIML-AAVLSKMGAYGFLRFSLPMLPQATAYFEPFMFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+G I ++ + Q DIKR+IAYS+++ +G + VG+ V+ ++F +++H
Sbjct: 282 LGIIGIVYISFAALAQTDIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVSHGLVI 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G I++ H+ + +GGL MP+ ++ +++ VG P SGF +
Sbjct: 342 AALFLCVG-ILLARGHSLRLDQLGGLASRMPVYATFLMLFVMANVGLPGTSGFVGE 396
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 21/269 (7%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA+K+F+ + S ML + ++ GT ++ ++L + + L +
Sbjct: 164 HAAVKFFLFTLAGSLPMLLALVWMWHHAGTTDM------VQLMHTAIAPTTQDWLFVAFL 217
Query: 690 LSF--KLGISPFHMWVPDVYQGASIIITLLLSTT-PKLSLFVIIYRLLIKCLLPLVINWQ 746
LSF K + P H W+PD Y A + T++L+ K+ + + R + L ++
Sbjct: 218 LSFGVKAAVWPMHTWLPDAYGEAPLPGTIMLAAVLSKMGAYGFL-RFSLPMLPQATAYFE 276
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+ L I ++ + +A+ Q + KRMIAYSS+AHMGL++ I ++ + +F
Sbjct: 277 PFMFALGIIGIVYISFAALAQTDIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVS 336
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
GL +I +F +G ILL + D+L GL R P A +M+F+ + G
Sbjct: 337 HGL--VIAALFLCVG-----ILLARGHSLRLDQLG---GLASRMPVYATFLMLFVMANVG 386
Query: 867 FPPTIGFYAKFFIFEKIFETQKIWLLLLI 895
P T GF + + + W+ LL+
Sbjct: 387 LPGTSGFVGEILVMIGAIQA-NFWVALLV 414
>gi|94309883|ref|YP_583093.1| NADH:ubiquinone oxidoreductase subunit L [Cupriavidus metallidurans
CH34]
gi|430805957|ref|ZP_19433072.1| NADH:ubiquinone oxidoreductase subunit L [Cupriavidus sp. HMR-1]
gi|93353735|gb|ABF07824.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Cupriavidus
metallidurans CH34]
gi|429501785|gb|ELA00112.1| NADH:ubiquinone oxidoreductase subunit L [Cupriavidus sp. HMR-1]
Length = 692
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR
Sbjct: 146 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAY 205
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 206 SGSMNYTDVFATREQLATVIFPGTDWMMITVACICLFIGAMGKSAQFPLHVWLPDSMEGP 265
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQNDIKR
Sbjct: 266 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLVIGAITALFMGFLGIIQNDIKR 325
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 326 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 385
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFF+GFYSKD
Sbjct: 386 GLRKYMPITWITSLVGSLALIGTPFFAGFYSKDS 419
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 138/276 (50%), Gaps = 18/276 (6%)
Query: 296 FEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSL--LMLISMIYLYYISNKSFNILS 352
+EA + +++IG W + +A +K FL +G ++ I ++ Y S ++ +
Sbjct: 157 WEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAYSGSMNYTDVFA 216
Query: 353 WHQLSITKI--EQIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAA 404
+ T I W+ IT FI K +P+H WLPD+ +E PT ++I AA
Sbjct: 217 TREQLATVIFPGTDWMMITVACICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAA 275
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
M+ G + + R S P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++
Sbjct: 276 TMVTAGIFMVARMS-PLFELSDTALS-FVLVIGAITALFMGFLGIIQNDIKRVVAYSTLS 333
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINV 523
+G++T+ L + A+ +++HA + +F++ G + + I N GG+
Sbjct: 334 QLGYMTVA---LGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKY 390
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+P + ++ SLA P +GF + II + +
Sbjct: 391 MPITWITSLVGSLALIGTPFFAGFYSKDSIIEAVAE 426
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 141/311 (45%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 136 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANLKAFLVNRVGD 192
Query: 644 -GFMLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L +G++ +F + + ++ ++ + + +G K
Sbjct: 193 FGFIL-GIGLLLAYSGSMNYTDVFATREQLATVIFPGTDWMMITVACICLFIGAMGKSAQ 251
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 252 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLVIGAIT 309
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 310 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF- 365
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
L A VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 366 ---LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFAGFYSK 417
Query: 877 FFIFEKIFETQ 887
I E + E+
Sbjct: 418 DSIIEAVAESH 428
>gi|374092076|gb|AEY83702.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Diplophyllum
albicans]
Length = 426
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 259/367 (70%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 20 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 79
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
FC+LD ++FY+FFE+ LIP+ IIIG WG R AA +FFLYTLMGSL ML++++ + +
Sbjct: 80 FCSLDLLIFYVFFESVLIPMSIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILSISF 139
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 140 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 197
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 198 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 257
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 258 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 317
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 318 STMPIFSTIFPFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 377
Query: 582 LSKNIIF 588
L ++F
Sbjct: 378 LYNRVVF 384
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 173 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 231
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 232 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 291
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 292 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 322
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I + TGT
Sbjct: 84 DLLIFYVFFESVLIPMSIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILSISFQTGT 143
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 144 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 199
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 200 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 254
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 255 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 304
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I F + P T F +F I F+ +
Sbjct: 305 HKTRIVKYYGGLVSTMPIFSTIFPFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 359
>gi|378826695|ref|YP_005189427.1| NADH dehydrogenase I subunit M [Sinorhizobium fredii HH103]
gi|365179747|emb|CCE96602.1| NADH dehydrogenase I chain M [Sinorhizobium fredii HH103]
Length = 491
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/367 (46%), Positives = 254/367 (69%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+K W+ I Y LG+DG+S F+ LTA + I +L S + I +K+ E+M + L + L
Sbjct: 62 EKHPWVPAIGITYALGVDGISALFVFLTALLGWICVLASWVAIDRKVKEFMVSLLSMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+ +EA LIP+++IIG WGG+ R YAA KFFLYTL GSL+ LI +I
Sbjct: 122 MLGVFCALDLFLFYVCWEAMLIPMYLIIGVWGGAGRVYAAFKFFLYTLAGSLVFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F IAFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFHGGETFDILALTAQDLPFDVQSWLFFAFLIAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVT+GIF L ++G I+QM +H + + A+F+ +G +Y + TR I+++GG
Sbjct: 302 YSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTTGALFLFVGVIYERTHTRSIADYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ V P ++ F +F+L++ +LPGT+ F+GE +++ N +G + SAAY
Sbjct: 362 LMKVAPVYTGFLALFTLSSMALPGTNSFVGELLVLSGGFAANMAVGTAAVLGALLSAAYL 421
Query: 580 LCLSKNI 586
L + + +
Sbjct: 422 LGMYRKV 428
Score = 77.0 bits (188), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 338 GALFLFVG-VIYERTHTRSIADYGGLMKVAPV 368
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
AA K+F+ + S L G+ +LY G F+++ L ++ V + ++
Sbjct: 160 AAFKFFLYTLAGSLVFLIGVIVLYFHGG-----ETFDILALTAQDLPFDVQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASVYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFAL 318
>gi|347528691|ref|YP_004835438.1| NADH-quinone oxidoreductase subunit M [Sphingobium sp. SYK-6]
gi|345137372|dbj|BAK66981.1| NADH-quinone oxidoreductase chain M [Sphingobium sp. SYK-6]
Length = 513
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 260/358 (72%), Gaps = 4/358 (1%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I LT F+ I I S D I+K++ EYM+AFL + L+IG F A D L
Sbjct: 75 WALGIDGIALMLIALTVFLMPICIGASWDAIQKRVGEYMAAFLFMETLMIGVFAAQDIFL 134
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNKSFNI 350
FYIFFEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LMLI+M+++ + + +
Sbjct: 135 FYIFFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLIAMLWMVREAGSTAIPV 194
Query: 351 LSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLG 410
L + + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 195 LMAYDFPVEA--QYWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMG 252
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
YG +RFSLP+FP+AS +F+ L+ LS+++++Y SL+A+VQ D+KKLIAYSS+AHM VT
Sbjct: 253 GYGFIRFSLPMFPEASAHFAWLVFALSMVAVVYTSLVALVQQDMKKLIAYSSVAHMAIVT 312
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVF 530
+G+F + ++GA++ M+ H L+S A+F+ +G +Y+++ TR I +GG+ +P +++
Sbjct: 313 VGLFAFNQQGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREIDRYGGLAINMPRYALL 372
Query: 531 FIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++F++A+ LPGTS F+GE + + + + + ++ +T +I AAY L L + ++F
Sbjct: 373 FMLFTMASVGLPGTSNFVGELLALTGVYQASSWVALVCTTGIILGAAYMLYLYRRVVF 430
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ + ++F
Sbjct: 219 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAHFAWLVFA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q D+K++IAYS+++ + +TVGL ++ ++ H
Sbjct: 278 LSMVAVVYTSLVALVQQDMKKLIAYSSVAHMAIVTVGLFAFNQQGLEGAMMVMLGHGLVS 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + ++ ++ VG P S F +
Sbjct: 338 GALFLCVG-VIYDRLHTREIDRYGGLAINMPRYALLFMLFTMASVGLPGTSNFVGE 392
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 23/220 (10%)
Query: 691 SFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + Q + +L K+ + I R + ++ ++
Sbjct: 217 AVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGGYGFI-RFSLPMFPEASAHFAWLV 275
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNS 804
L++ +++ ++ A+ Q + K++IAYSS+AHM GL F+ ++ + ++
Sbjct: 276 FALSMVAVVYTSLVALVQQDMKKLIAYSSVAHMAIVTVGLFAFNQQGLEGAMMVMLGHGL 335
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
LF + I+ L T E+D + GL P AL+ M+F +
Sbjct: 336 VSGALFLCVGVIYDRL---------------HTREIDRYGGLAINMPRYALLFMLFTMAS 380
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
G P T F + +++ W+ L+ ++GA
Sbjct: 381 VGLPGTSNFVGELLALTGVYQASS-WVALVCTTGIILGAA 419
>gi|152980500|ref|YP_001353163.1| NADH dehydrogenase I subunit L [Janthinobacterium sp. Marseille]
gi|151280577|gb|ABR88987.1| NADH dehydrogenase I chain L [Janthinobacterium sp. Marseille]
Length = 699
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY KP AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTKPTAIVANMKAFLVNRVGDFGFILGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSMDYAEVFAKKEQLATLTLPGTDWMLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IG+ITA FMG LGIIQNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLIIGSITALFMGFLGIIQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++I S I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 292 TALSFVLIIGS-ITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F++ G + + I N GG+ +P + ++ SLA P S
Sbjct: 348 HLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGSLALIGTPFFS 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 138/307 (44%), Gaps = 22/307 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFAMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTKPTAIVANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+++ +F + L + +L ++ + + +G K P
Sbjct: 191 IL-GIGLLLAYAGSMDYAEVFAKKEQLATLTLPGTDWMLLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLIIGSITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 308 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L A VII + ++ ++ GL + P + ++ +L G P GFY+K I
Sbjct: 361 LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSI 415
Query: 880 FEKIFET 886
E + T
Sbjct: 416 IEAVHAT 422
>gi|374092038|gb|AEY83683.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Monoclea
gottschei]
Length = 437
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 265/367 (72%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 183 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G+ + + + ++ GGL MP
Sbjct: 302 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMP 332
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISI 792
AYSS+AHM + + S+
Sbjct: 266 AYSSVAHMNFVTIGMFSL 283
>gi|374365446|ref|ZP_09623536.1| NADH:ubiquinone oxidoreductase subunit L [Cupriavidus basilensis
OR16]
gi|373103019|gb|EHP44050.1| NADH:ubiquinone oxidoreductase subunit L [Cupriavidus basilensis
OR16]
Length = 699
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR
Sbjct: 146 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAY 205
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 206 SGSMNYTDVFAARDQLATVIFPGTDWLMITVACICLFIGAMGKSAQFPLHVWLPDSMEGP 265
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQNDIKR
Sbjct: 266 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLVIGAITALFMGFLGIIQNDIKR 325
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 326 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 385
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFF+GFYSKD
Sbjct: 386 GLRKYMPITWITSLVGSLALIGTPFFAGFYSKDS 419
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 231 WLMITVACICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 289
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 290 -PLFELSDTALS-FVLVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 344
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F++ G + + I N GG+ +P + ++ SLA
Sbjct: 345 SAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLA 404
Query: 538 NCSLPGTSGFIGEFMIILSAVK 559
P +GF + II + +
Sbjct: 405 LIGTPFFAGFYSKDSIIEAVAE 426
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 141/311 (45%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 136 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANLKAFLVNRVGD 192
Query: 644 -GFMLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L +G++ +F + + ++ ++ + + +G K
Sbjct: 193 FGFIL-GIGLLLAYSGSMNYTDVFAARDQLATVIFPGTDWLMITVACICLFIGAMGKSAQ 251
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 252 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLVIGAIT 309
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 310 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF- 365
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
L A VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 366 ---LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFAGFYSK 417
Query: 877 FFIFEKIFETQ 887
I E + E+
Sbjct: 418 DSIIEAVAESH 428
>gi|398354435|ref|YP_006399899.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium fredii USDA
257]
gi|390129761|gb|AFL53142.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium fredii USDA
257]
Length = 491
Score = 353 bits (906), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 168/367 (45%), Positives = 251/367 (68%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA + I +L S + I +K+ E+M A L + L
Sbjct: 62 ETRAWVPAMGITYALGVDGISALFVFLTALLGWICVLASWVAIDRKVKEFMVALLSMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+ +EA LIP+++IIG WGG R YAA KFFLYTL GSLL L+ +I
Sbjct: 122 MLGVFCALDLFLFYVCWEAMLIPMYLIIGVWGGDGRVYAAFKFFLYTLAGSLLFLVGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F IAFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFHGGETFDILALTAQDLPFRVQSWLFFAFLIAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y +A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLALSALAIVYGGFLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVT+GIF L ++G I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTMGIFSLNLRGLEGGILQMFNHGVTTGALFLFVGVIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ V P ++ F +F+L++ +LPGT+ F+GE +++ N +G + AAY
Sbjct: 362 LMKVAPVYTGFLALFTLSSMALPGTNSFVGELLVLSGGFAANMAVGTAAVLGALLGAAYL 421
Query: 580 LCLSKNI 586
L + + +
Sbjct: 422 LGMYRKV 428
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + G L + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSALAIVYGGFLALAQDDLKKLVAYSSISHMGFVTMGIFSLNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I N GGL K P+
Sbjct: 338 GALFLFVG-VIYERTHTRSIANYGGLMKVAPV 368
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G F+++ L + S L ++
Sbjct: 160 AAFKFFLYTLAGSLLFLVGVIVLYFHGG-----ETFDILALTAQDLPFRVQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASVYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G A+ Q + K+++AYSSI+HMG + I S+
Sbjct: 274 LMLALSALAIVYGGFLALAQDDLKKLVAYSSISHMGFVTMGIFSL 318
>gi|339325148|ref|YP_004684841.1| NADH-quinone oxidoreductase subunit L [Cupriavidus necator N-1]
gi|338165305|gb|AEI76360.1| NADH-quinone oxidoreductase subunit L [Cupriavidus necator N-1]
Length = 695
Score = 353 bits (905), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR
Sbjct: 146 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAY 205
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 206 AGSMNYTEVFAARDQLATVIFPGTDWLMITVACICLFIGAMGKSAQFPLHVWLPDSMEGP 265
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQNDIKR
Sbjct: 266 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLVIGAITALFMGFLGIIQNDIKR 325
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 326 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 385
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFF+GFYSKD
Sbjct: 386 GLRKYMPITWITSLVGSLALIGTPFFAGFYSKDS 419
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 231 WLMITVACICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 289
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 290 -PLFELSDTALS-FVLVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 344
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + + I N GG+ +P + ++ SLA
Sbjct: 345 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLA 404
Query: 538 NCSLPGTSGFIGEFMIILSAVK 559
P +GF + II + +
Sbjct: 405 LIGTPFFAGFYSKDSIIEAVAE 426
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 141/311 (45%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 136 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANLKAFLVNRVGD 192
Query: 644 -GFMLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L G++ +F + + ++ ++ + + +G K
Sbjct: 193 FGFIL-GIGLLLAYAGSMNYTEVFAARDQLATVIFPGTDWLMITVACICLFIGAMGKSAQ 251
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 252 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLVIGAIT 309
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 310 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF- 365
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 366 ---LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFAGFYSK 417
Query: 877 FFIFEKIFETQ 887
I E + E+
Sbjct: 418 DSIIEAVAESH 428
>gi|194289170|ref|YP_002005077.1| NADH dehydrogenase subunit l [Cupriavidus taiwanensis LMG 19424]
gi|193223005|emb|CAQ69010.1| NADH:ubiquinone oxidoreductase complex I, chain L [Cupriavidus
taiwanensis LMG 19424]
Length = 695
Score = 353 bits (905), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR
Sbjct: 146 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAY 205
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 206 AGSMNYTEVFAARDQLATVVFPGTDWMMITVACICLFIGAMGKSAQFPLHVWLPDSMEGP 265
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQNDIKR
Sbjct: 266 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLVIGAITALFMGFLGIIQNDIKR 325
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 326 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 385
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFF+GFYSKD
Sbjct: 386 GLRKYMPITWITSLVGSLALIGTPFFAGFYSKDS 419
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 231 WMMITVACICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 289
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 290 -PLFELSDTALS-FVLVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 344
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + + I N GG+ +P + ++ SLA
Sbjct: 345 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLA 404
Query: 538 NCSLPGTSGFIGEFMIILSAVK 559
P +GF + II + +
Sbjct: 405 LIGTPFFAGFYSKDSIIEAVAE 426
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 141/311 (45%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 136 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANLKAFLVNRVGD 192
Query: 644 -GFMLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L G++ +F + + ++ ++ + + +G K
Sbjct: 193 FGFIL-GIGLLLAYAGSMNYTEVFAARDQLATVVFPGTDWMMITVACICLFIGAMGKSAQ 251
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 252 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLVIGAIT 309
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 310 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF- 365
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 366 ---LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFAGFYSK 417
Query: 877 FFIFEKIFETQ 887
I E + E+
Sbjct: 418 DSIIEAVAESH 428
>gi|374092070|gb|AEY83699.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Anthelia
julacea]
Length = 437
Score = 353 bits (905), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 262/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ L +K EYM AF I +I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGLRSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDPQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILSKLGTYGFLRFSIPMFPEATPYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH +SSA F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSAPFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+ AN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFLFFTPANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A + G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILSKLGTYGFLRFSIPMFPEATPYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ FL G+ + + + ++ GGL MPI
Sbjct: 303 SAPFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 95/197 (48%), Gaps = 12/197 (6%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+ Q ++ + L + S K+ + P H+W+P+ + A S+I+
Sbjct: 155 TDPQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
+LS KL + + R I + + L++ ++I +++ I Q + K++IA
Sbjct: 211 GILS---KLGTYGFL-RFSIPMFPEATPYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIA 266
Query: 776 YSSIAHMGLMLFSIISI 792
YSS+AHM + + S+
Sbjct: 267 YSSVAHMNFVTIGMFSL 283
>gi|11466552|ref|NP_044801.1| NADH dehydrogenase subunit 4 (mitochondrion) [Reclinomonas
americana]
gi|2258382|gb|AAD11916.1| NADH dehydrogenase subunit 4 (mitochondrion) [Reclinomonas
americana]
Length = 493
Score = 353 bits (905), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 185/396 (46%), Positives = 270/396 (68%), Gaps = 12/396 (3%)
Query: 203 GLLSLVGAPFFSGFYSKDKKKI-------WIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
LL+ + + F F+ K K WI+ NI++ LGIDG+SL+ + LT F+ +
Sbjct: 44 SLLTFILSLFLWIFFDKSTSKFQFVYEVNWIETLNIHFSLGIDGISLFLVILTTFLIPLC 103
Query: 256 ILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN 314
IL + IK + EYM FL+L L+I FC LD +LFYIFFE+ LIP+FI+IG WG
Sbjct: 104 ILTGWESIKHNIKEYMICFLLLDALLIMIFCVLDLVLFYIFFESVLIPMFIVIGVWGSRE 163
Query: 315 RSY-AAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWHQLSITKIEQIWLFITFFI 372
R AA FLYT GSLLMLI+++ +Y+ + + +L + S + + +WL FFI
Sbjct: 164 RKVRAAYMLFLYTFFGSLLMLIAIMVIYFDAGTTDIQVLLTTEFSQERQKLLWL--AFFI 221
Query: 373 AFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNL 432
+FAIKIP+ P H WLP+AHVEAPT GSV+LA ++LKLG YG+LRFS+P+FP+A+ YF+ L
Sbjct: 222 SFAIKIPMVPFHVWLPEAHVEAPTAGSVLLAGVLLKLGGYGILRFSIPMFPEATVYFTPL 281
Query: 433 IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHA 492
+ T+S+I+IIY SL + QID+K++IAYSS+AHM FVT+G+F L ++G+I+ M+SH
Sbjct: 282 VYTMSIIAIIYTSLTTLRQIDLKRIIAYSSVAHMNFVTIGMFSLNMQGLEGSILLMLSHG 341
Query: 493 LISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFM 552
++SSA+F+ IG LY++ KTRL+ + G++ +P F+ F++F++AN SLPGTS F+GEF+
Sbjct: 342 IVSSALFLCIGVLYDRHKTRLLKYYSGVVQTMPIFATLFMLFTMANISLPGTSSFVGEFL 401
Query: 553 IILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+++ A N + +T +I AAYSL L + F
Sbjct: 402 VLIGAFNSNTTVAFFATTGIILGAAYSLWLYNRVAF 437
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P H WLP++ +E PT S L+ A ++ G + I R S P+F + + +++
Sbjct: 226 KIPMVPFHVWLPEAHVEAPTAGSVLL-AGVLLKLGGYGILRFSIPMFPEATVYFTPLVYT 284
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+I A + L + Q D+KRIIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 MSIIAIIYTSLTTLRQIDLKRIIAYSSVAHMNFVTIGMFSLNMQGLEGSILLMLSHGIVS 344
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G ++ + + ++ G+ + MPI
Sbjct: 345 SALFLCIG-VLYDRHKTRLLKYYSGVVQTMPI 375
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 125/281 (44%), Gaps = 16/281 (5%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+L+ Y+ E + + + ++I + AA F+ S ML I ++Y GT
Sbjct: 137 DLVLFYIFFESVLIPMFIVIGVWGSRERKVRAAYMLFLYTFFGSLLMLIAIMVIYFDAGT 196
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
++Q V+ + L L + + K+ + PFH+W+P+ + A ++LL+
Sbjct: 197 TDIQ----VLLTTEFSQERQKLLWLAFFISFAIKIPMVPFHVWLPEAHVEAPTAGSVLLA 252
Query: 720 -TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
KL + I+ R I + + ++ ++I ++I +++ + Q + KR+IAYSS
Sbjct: 253 GVLLKLGGYGIL-RFSIPMFPEATVYFTPLVYTMSIIAIIYTSLTTLRQIDLKRIIAYSS 311
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD 838
+AHM + + S+ + + ++++ F I +L + +KT
Sbjct: 312 VAHMNFVTIGMFSLNM--------QGLEGSILLMLSHGIVSSALFLCIGVLYDR--HKTR 361
Query: 839 ELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L + G+ Q P A + M+F + P T F +F +
Sbjct: 362 LLKYYSGVVQTMPIFATLFMLFTMANISLPGTSSFVGEFLV 402
>gi|374092124|gb|AEY83726.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Tetraphis
pellucida]
Length = 418
Score = 352 bits (904), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 260/367 (70%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+ I IL+ IK EYM AFLI +I
Sbjct: 4 WLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLIRESFMIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++++++
Sbjct: 64 SCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
+AHM FVT+G+F L I+G+I+ M+SH ISSA+ I +G LY++ KTRL+ +GG++
Sbjct: 242 PVAHMNFVTIGMFSLNTQGIEGSILLMLSHGPISSALSICVGVLYDRHKTRLVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P F+ F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPMFATIFPFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L +IF
Sbjct: 362 LYNRVIF 368
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 157 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYT 215
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS ++ + ++T+G L SI +++H
Sbjct: 216 LSVIAIIYTSLTTIRQIDLKKIIAYSPVAHMNFVTIGMFSLNTQGIEGSILLMLSHGPIS 275
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ L + G ++ + + ++ GGL MP+
Sbjct: 276 SALSICVG-VLYDRHKTRLVKYYGGLVSTMPM 306
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 23/256 (8%)
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGN---NLLSI 604
I F ++L+ CI V S+ + Y I F++ + MI+ + +LL
Sbjct: 19 ISLFFVVLTTFLIPICILVGWSSIKSYKKEY------MIAFLIRESFMIAVSCMLDLLLF 72
Query: 605 YLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQS 664
Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 73 YVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTTDLQ- 131
Query: 665 IFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLS 719
++ + L + S K+ + P H+W+P+ + G+ I+ +LL
Sbjct: 132 ---ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILL- 187
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSI 779
KL + + R I + + + L++ ++I +++ I Q + K++IAYS +
Sbjct: 188 ---KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSPV 243
Query: 780 AHMGLMLFSIISIKTS 795
AHM + + S+ T
Sbjct: 244 AHMNFVTIGMFSLNTQ 259
>gi|374092078|gb|AEY83703.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Gymnomitrion
concinnatum]
Length = 437
Score = 352 bits (904), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 182/367 (49%), Positives = 262/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I L+I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESLLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IA+S
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAHS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH +SSA+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALLSCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P F F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFCTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIA+S+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAHSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ L G+ + + + ++ GGL MPI C L L+ + P S F
Sbjct: 303 SALLSCVGA-LYDRHKTRIVKYYGGLVSTMPIFCTIFLFFTLANMSLPGTSSF 354
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISI 792
A+SS+AHM + + S+
Sbjct: 266 AHSSVAHMNFVTIGMFSL 283
>gi|374092074|gb|AEY83701.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Calypogeia
muelleriana]
Length = 430
Score = 352 bits (904), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 182/367 (49%), Positives = 262/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ ++ EYM AF I +I
Sbjct: 24 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVESYKKEYMIAFFICESFLIAV 83
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 84 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 143
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 144 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 201
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 202 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 261
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH +SSA F+ +G LY++ KTR++ +GG++
Sbjct: 262 SVAHMNFVTIGMFGLNIQGIEGSILLMLSHGPVSSAPFLCVGALYDRHKTRIVKYYGGLV 321
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P S F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 322 STMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 381
Query: 582 LSKNIIF 588
L ++F
Sbjct: 382 LYNRVVF 388
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 177 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 235
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV---GLGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+ GL + SI +++H
Sbjct: 236 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFGLNIQGIEGSILLMLSHGPVS 295
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ FL G+ + + + ++ GGL MPI+ L L+ + P S F
Sbjct: 296 SAPFLCVGA-LYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSF 347
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 88 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 147
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 148 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 203
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 204 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 258
Query: 775 AYSSIAHM 782
AYSS+AHM
Sbjct: 259 AYSSVAHM 266
>gi|113867081|ref|YP_725570.1| NADH dehydrogenase subunit L [Ralstonia eutropha H16]
gi|113525857|emb|CAJ92202.1| NADH dehydrogenase chain L [Ralstonia eutropha H16]
Length = 695
Score = 352 bits (903), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 177/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR
Sbjct: 146 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAY 205
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 206 AGSMNYTEVFAARDQLATVIFPGTDWLMITVACICLFIGAMGKSAQFPLHVWLPDSMEGP 265
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQNDIKR
Sbjct: 266 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLVIGAITALFMGFLGIIQNDIKR 325
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 326 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 385
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMP+T ITSL+G L+L+G PFF+GFYSKD
Sbjct: 386 GLRKYMPLTWITSLVGSLALIGTPFFAGFYSKDS 419
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 231 WLMITVACICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 289
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 290 -PLFELSDTALS-FVLVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 344
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + + I N GG+ +P + ++ SLA
Sbjct: 345 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPLTWITSLVGSLA 404
Query: 538 NCSLPGTSGFIGEFMII 554
P +GF + II
Sbjct: 405 LIGTPFFAGFYSKDSII 421
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 141/311 (45%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 136 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANLKAFLVNRVGD 192
Query: 644 -GFMLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L G++ +F + + ++ ++ + + +G K
Sbjct: 193 FGFIL-GIGLLLAYAGSMNYTEVFAARDQLATVIFPGTDWLMITVACICLFIGAMGKSAQ 251
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 252 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLVIGAIT 309
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 310 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF- 365
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 366 ---LGAGSVIIGMHHD-----QDIRNMGGLRKYMPLTWITSLVGSLALIGTPFFAGFYSK 417
Query: 877 FFIFEKIFETQ 887
I E + E+
Sbjct: 418 DSIIEAVAESH 428
>gi|421746568|ref|ZP_16184356.1| NADH:ubiquinone oxidoreductase subunit L [Cupriavidus necator
HPC(L)]
gi|409774885|gb|EKN56442.1| NADH:ubiquinone oxidoreductase subunit L [Cupriavidus necator
HPC(L)]
Length = 702
Score = 352 bits (903), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR
Sbjct: 151 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLLLAY 210
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 211 SGSLNYTEVFAARDQLATVTFPGTDWMMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 270
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+ ALS +L IGAITA FMG LGIIQNDIKR
Sbjct: 271 TPISALIHAATMVTAGIFMVSRMSPLFELSDAALSFVLVIGAITALFMGFLGIIQNDIKR 330
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 331 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 390
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 391 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 424
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 244 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 301
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A
Sbjct: 302 AALSF---VLVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYQVA 355
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F++ G + + I N GG+ +P + ++ SLA P
Sbjct: 356 VFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLALIGTPF 415
Query: 544 TSGFIGEFMII 554
SGF + II
Sbjct: 416 FSGFYSKDSII 426
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 146/316 (46%), Gaps = 38/316 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF++ +K F++ +
Sbjct: 141 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFAN---LKAFLVNRVGD 197
Query: 644 -GFMLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L +G+L +F + + +L ++ + + +G K
Sbjct: 198 FGFIL-GIGLLLAYSGSLNYTEVFAARDQLATVTFPGTDWMMLTVACICLFIGAMGKSAQ 256
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L V L+I
Sbjct: 257 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDAALSFV------LVI 310
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 311 GAITALFMGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFK 366
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + L A VII + ++ ++ GL + P + ++ +L G P
Sbjct: 367 ALLF----LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFS 417
Query: 872 GFYAKFFIFEKIFETQ 887
GFY+K I E + E+
Sbjct: 418 GFYSKDSIIEAVAESH 433
>gi|353526554|ref|YP_004927623.1| NADH dehydrogenase subunit 4 (mitochondrion) [Anomodon rugelii]
gi|336089480|gb|AEH99670.1| NADH dehydrogenase subunit 4 [Anomodon rugelii]
Length = 495
Score = 352 bits (903), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 261/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+ I IL+ IK EYM AFLI +I
Sbjct: 74 WLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC D +LFY+F E+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++++++
Sbjct: 134 FCMPDLLLFYVFLESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFF 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH ++SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGMVSSALFLCVGVLYDRHKTRLVKYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ +LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPMFSTIFLFSTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNIIF 588
+IF
Sbjct: 432 PYNRVIF 438
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGMV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + + ++ GGL MP+ L L+ + P S F
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVKYYGGLVSTMPMFSTIFLFSTLANMSLPGTSSF 397
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 14/198 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ LE + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFLESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISI 792
AYSS+AHM + + S+
Sbjct: 309 AYSSVAHMNFVTIGMFSL 326
>gi|336322504|ref|YP_004602471.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Flexistipes sinusarabici DSM 4947]
gi|336106085|gb|AEI13903.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Flexistipes sinusarabici DSM 4947]
Length = 497
Score = 352 bits (902), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 182/374 (48%), Positives = 261/374 (69%), Gaps = 6/374 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K WI F I Y+LG+DG+S+ I LT +T I IL S I+K+ E+ + L+L
Sbjct: 63 EKVDWIPAFGIQYYLGVDGISVLMIFLTTLLTAIAILGSFTYIQKRQREFYLSMLVLETG 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD LFYIF+EA LIP+++IIG WGG R YAA+KFFLYTL GSLLM++++I
Sbjct: 123 MVGVFLALDFFLFYIFWEAMLIPMYLIIGVWGGPRRIYAAVKFFLYTLGGSLLMMLAIIA 182
Query: 340 LYYISNK-----SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
LY+ +F+IL ++ QI++F+ FF+ FAIK+P++P HTWLPDAHVEA
Sbjct: 183 LYFKHGAITGVYTFDILQIASVTYPAEFQIFVFLAFFLGFAIKVPMFPFHTWLPDAHVEA 242
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSVILA ++LK+G YG LRF LPI P AS F LI TLS+I+IIY +L+AMVQ DI
Sbjct: 243 PTAGSVILAGVLLKMGTYGFLRFCLPITPFASIKFVPLIATLSVIAIIYGALVAMVQDDI 302
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KKL+AYSS++HMGFVTLGI+ I+G I+QM +H +I+ A+F+ +G +Y + TR+I
Sbjct: 303 KKLVAYSSVSHMGFVTLGIYAFNPAGIEGGILQMFNHGIITGALFLLVGLIYERTHTRII 362
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+ +GGI +P F+ FF+IF++A+ +LP GFIGEF++++ + + ++ + +IF
Sbjct: 363 NEYGGIAAKVPVFATFFLIFTMASIALPSMGGFIGEFLVLVGSFQAFSNYAIVATIGVIF 422
Query: 575 SAAYSLCLSKNIIF 588
+A Y L + + + F
Sbjct: 423 AAVYMLWMYQRVFF 436
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 12/185 (6%)
Query: 40 FLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELS 97
FL +G K FP HTWLPD+ +E PT A ++I A ++ G + R P+ +
Sbjct: 215 FLAFFLGFAIKVPMFPFHTWLPDAHVEAPT-AGSVILAGVLLKMGTYGFLRFCLPITPFA 273
Query: 98 NTA-LSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVS---- 152
+ + +I + I + L+ ++Q+DIK+++AYS++S +G++T LG+ A+ +
Sbjct: 274 SIKFVPLIATLSVIAIIYGALVAMVQDDIKKLVAYSSVSHMGFVT--LGIYAFNPAGIEG 331
Query: 153 -IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
I + H LFL G +I H + I GG+ +P+ LI ++ + P
Sbjct: 332 GILQMFNHGIITGALFLLVG-LIYERTHTRIINEYGGIAAKVPVFATFFLIFTMASIALP 390
Query: 212 FFSGF 216
GF
Sbjct: 391 SMGGF 395
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 24/264 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNIN--CSVLALSLLLIIV 688
AA+K+F+ + S M+ I LY G + F+++++ ++ L +
Sbjct: 161 AAVKFFLYTLGGSLLMMLAIIALYFKHGAITGVYTFDILQIASVTYPAEFQIFVFLAFFL 220
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV----IN 744
G + K+ + PFH W+PD + A +++L+ + L + Y L CL P+ I
Sbjct: 221 GFAIKVPMFPFHTWLPDAHVEAPTAGSVILA---GVLLKMGTYGFLRFCL-PITPFASIK 276
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ ++ L++ ++I G + A+ Q + K+++AYSS++HMG + I + + I
Sbjct: 277 FVPLIATLSVIAIIYGALVAMVQDDIKKLVAYSSVSHMGFVTLGIYAFNPAGIEGGILQM 336
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE--LDIFIGLHQRNPWCALIMMIFMF 862
+ G IIT G + LL +T ++ + G+ + P A +IF
Sbjct: 337 FNHG---IIT---------GALFLLVGLIYERTHTRIINEYGGIAAKVPVFATFFLIFTM 384
Query: 863 SLAGFPPTIGFYAKFFIFEKIFET 886
+ P GF +F + F+
Sbjct: 385 ASIALPSMGGFIGEFLVLVGSFQA 408
>gi|296536144|ref|ZP_06898272.1| NADH-quinone oxidoreductase subunit M [Roseomonas cervicalis ATCC
49957]
gi|296263515|gb|EFH10012.1| NADH-quinone oxidoreductase subunit M [Roseomonas cervicalis ATCC
49957]
Length = 503
Score = 352 bits (902), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 176/365 (48%), Positives = 263/365 (72%), Gaps = 2/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ F + Y +G+DG+S+ F+ L+ + + IL S + ++ ++ EYM AFL+L +++G
Sbjct: 74 WMPEFGLGYHMGVDGISVLFVLLSTALVPLCILASWEAVQNRVREYMVAFLVLETMMVGM 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F LD +LFYIFFE LIP+F+IIG WGG+ R YAA K FLYTL+GSLLML++M+ L+Y
Sbjct: 134 FSTLDMVLFYIFFEGVLIPMFLIIGVWGGARRVYAAYKLFLYTLLGSLLMLLAMLLLWYQ 193
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ S+ I + +L I + Q WLF+ F +FA+K+P+WP+HTWLPDAHVEAPT GSVILA
Sbjct: 194 AGTSY-IPALFELRIPEHVQTWLFLAFLASFAVKVPMWPVHTWLPDAHVEAPTAGSVILA 252
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
++LK+G YG LRFSLP+ P A+ +F+ LI LS+I+++Y SL+A+ Q D+KKLIAYSS+
Sbjct: 253 GVLLKMGAYGFLRFSLPLLPQATEFFAPLIFALSVIAVVYTSLVALAQEDMKKLIAYSSV 312
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHMG VT+GIF L I GAI QM+SH ++S A+F+ +G LY+++ +R I +GG+ V
Sbjct: 313 AHMGIVTIGIFTLNHQGISGAIFQMLSHGVVSGALFLCVGVLYDRVHSRDILRYGGVAKV 372
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P +++ F++F++ + +LPGT+GF GEF++I+ A N + + +I A Y L L
Sbjct: 373 MPSYAMVFMLFTMGSVALPGTAGFPGEFLVIVGAWNANPWVALGAGLGMILGAGYMLYLY 432
Query: 584 KNIIF 588
+ ++F
Sbjct: 433 RRVVF 437
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R S PL + + ++F
Sbjct: 226 KVPMWPVHTWLPDAHVEAPT-AGSVILAGVLLKMGAYGFLRFSLPLLPQATEFFAPLIFA 284
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q D+K++IAYS+++ +G +T+G+ G+S +IF +++H
Sbjct: 285 LSVIAVVYTSLVALAQEDMKKLIAYSSVAHMGIVTIGIFTLNHQGISG---AIFQMLSHG 341
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ + H++DI GG+ K MP + ++ + V P +GF
Sbjct: 342 VVSGALFLCVG-VLYDRVHSRDILRYGGVAKVMPSYAMVFMLFTMGSVALPGTAGF 396
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 684 LLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
L + + K+ + P H W+PD + A +++L+ L + ++ LPL+
Sbjct: 217 LAFLASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAGV----LLKMGAYGFLRFSLPLLP 272
Query: 744 N----WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNL 799
+ ++ L++ +++ ++ A+ Q + K++IAYSS+AHMG++ I ++ +
Sbjct: 273 QATEFFAPLIFALSVIAVVYTSLVALAQEDMKKLIAYSSVAHMGIVTIGIFTLNHQGISG 332
Query: 800 IIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
IF G+ + GA + + + + + D L + G+ + P A++ M+
Sbjct: 333 AIFQMLSHGV---------VSGALFLCVGVLYDRVHSRDILR-YGGVAKVMPSYAMVFML 382
Query: 860 FMFSLAGFPPTIGFYAKFFI 879
F P T GF +F +
Sbjct: 383 FTMGSVALPGTAGFPGEFLV 402
>gi|374092050|gb|AEY83689.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Riella sp.
SC s.n.]
Length = 395
Score = 352 bits (902), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/355 (50%), Positives = 257/355 (72%), Gaps = 5/355 (1%)
Query: 237 IDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIF 295
IDG+SL+F+ LT F+T I IL+ +K EYM AF I +I FC+LD ++FY+F
Sbjct: 1 IDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVF 60
Query: 296 FEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSW 353
FE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++ + + IL
Sbjct: 61 FESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLT 120
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
+ S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVILA I+LKLG YG
Sbjct: 121 TEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYG 178
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYSS+AHM FVT+G+
Sbjct: 179 FLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGM 238
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG+++ +P FS F+
Sbjct: 239 FSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLF 298
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL L ++F
Sbjct: 299 FTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVF 353
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 141 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 199
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 200 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 259
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 260 SSALFLCVGA-LYDRHKTRIVKYYGGLVSTMPI 291
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 53 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 112
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 113 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 168
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 169 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 223
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 224 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 273
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 274 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 328
>gi|87200302|ref|YP_497559.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Novosphingobium aromaticivorans DSM 12444]
gi|87135983|gb|ABD26725.1| NADH dehydrogenase subunit M [Novosphingobium aromaticivorans DSM
12444]
Length = 516
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/380 (46%), Positives = 265/380 (69%), Gaps = 17/380 (4%)
Query: 210 APFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAE 268
AP F+GF K LGIDG++L I LT F+ I I S + I K+ E
Sbjct: 69 APLFAGFAWK---------------LGIDGIALLLIALTVFLMPICIGASWVSIDKRQGE 113
Query: 269 YMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLM 328
Y +AFL++ L+IG F A D LFYI FEA LIP+++IIG WGG++R YA+ KFFLYTL+
Sbjct: 114 YYAAFLLMETLMIGVFAAQDLFLFYIMFEAGLIPMYLIIGVWGGADRIYASYKFFLYTLL 173
Query: 329 GSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLP 388
GS+LMLI+M ++ + + +I + + Q WL++ FF +FA+K+P+WP+HTWLP
Sbjct: 174 GSVLMLIAMFWMVNEAGTT-DIPTLMVYNFPVKAQTWLWLAFFASFAVKMPMWPVHTWLP 232
Query: 389 DAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
DAHV+APT GSVILA ++LK+G YG +RFSLP+FP+AS F+ L+ LS+ +++ SLIA
Sbjct: 233 DAHVQAPTAGSVILAGVLLKMGGYGFIRFSLPMFPEASAQFAPLVFGLSMAAVVITSLIA 292
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQ 508
+VQ D+KKLIAYSS+AHM VT+G+F + ++G++I M+SH L+S A+F+S+G +Y++
Sbjct: 293 LVQHDMKKLIAYSSVAHMAIVTVGLFAFNRQGLEGSMIVMLSHGLVSGALFLSVGVIYDR 352
Query: 509 MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLT 568
+ TR I +GG+ +P+++VFF++F++A+ LPGTSGF+GEF+ ++ + + + ++
Sbjct: 353 LHTREIDRYGGLSINMPYYAVFFLLFTMASIGLPGTSGFVGEFLSLIGIYQLSSWVALVC 412
Query: 569 STALIFSAAYSLCLSKNIIF 588
+T +I AAY L L + + +
Sbjct: 413 TTGIILGAAYMLYLYRRVAY 432
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ + ++F
Sbjct: 221 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQFAPLVFG 279
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+D+K++IAYS+++ + +TVGL S+ +++H
Sbjct: 280 LSMAAVVITSLIALVQHDMKKLIAYSSVAHMAIVTVGLFAFNRQGLEGSMIVMLSHGLVS 339
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFLS G +I + H ++I GGL MP + L+ ++ +G P SGF +
Sbjct: 340 GALFLSVG-VIYDRLHTREIDRYGGLSINMPYYAVFFLLFTMASIGLPGTSGFVGE 394
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 142/327 (43%), Gaps = 35/327 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L + +MI + +L Y+ E L+ + L + + + I++S K+F+ +L
Sbjct: 118 FLLMETLMIGVFAAQDLFLFYIMFEAGLIPMYLIIGVWGGADRIYAS---YKFFLYTLLG 174
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ + N L + K+ + P H W
Sbjct: 175 SVLMLIAMFWMVNEAGTTDIPTLM----VYNFPVKAQTWLWLAFFASFAVKMPMWPVHTW 230
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+PD + Q + +L K+ + I R + + ++ L++ +++I +
Sbjct: 231 LPDAHVQAPTAGSVILAGVLLKMGGYGFI-RFSLPMFPEASAQFAPLVFGLSMAAVVITS 289
Query: 762 VSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q++ K++IAYSS+AHM GL F+ ++ S ++ LF + I
Sbjct: 290 LIALVQHDMKKLIAYSSVAHMAIVTVGLFAFNRQGLEGSMIVMLSHGLVSGALFLSVGVI 349
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+D + GL P+ A+ ++F + G P T GF +
Sbjct: 350 YDRL---------------HTREIDRYGGLSINMPYYAVFFLLFTMASIGLPGTSGFVGE 394
Query: 877 FFIFEKIFETQKIWLLLLIIMCSLIGA 903
F I++ W+ L+ ++GA
Sbjct: 395 FLSLIGIYQLSS-WVALVCTTGIILGA 420
>gi|398835061|ref|ZP_10592446.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Herbaspirillum sp. YR522]
gi|398218563|gb|EJN05067.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Herbaspirillum sp. YR522]
Length = 704
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR+G
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGFILGIGLLLAY 200
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSMNYTEVFAKRADLAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS+IL IGAITA FMG LG IQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSVILVIGAITALFMGFLGTIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 103/194 (53%), Gaps = 8/194 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I F+ K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S +I+ + I+ +++ + +Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 292 TALS-VILVIGAITALFMGFLGTIQTDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLLGSLALIGTPFFS 407
Query: 546 GFIGEFMIILSAVK 559
GF + II +A +
Sbjct: 408 GFYSKDSIIEAAAE 421
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 145/309 (46%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + +A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G++ +F + L + +L ++ + + VG K P
Sbjct: 191 IL-GIGLLLAYAGSMNYTEVFAKRADLAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLIL-AIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ L L ++L++ AI +L
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSVILVIGAITALF 307
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 308 MGFLGTI-QTDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 360
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 361 -LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Query: 879 IFEKIFETQ 887
I E E+
Sbjct: 415 IIEAAAESH 423
>gi|374092084|gb|AEY83706.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Syzygiella
autumnalis]
Length = 437
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 258/367 (70%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I I + +K EYM AF I +I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICIPVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYL-Y 341
FC+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++ +
Sbjct: 91 FCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIPF 150
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFSCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F +LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 329 STMPIFSTIFSFSTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LF G+ + + + ++ GGL MPI
Sbjct: 303 SALFSCVGA-LYDRHKTRIVKYYGGLVSTMPI 333
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I + TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIPFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISI 792
AYSS+AHM + + S+
Sbjct: 266 AYSSVAHMNFVTIGMFSL 283
>gi|148555904|ref|YP_001263486.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sphingomonas wittichii RW1]
gi|148501094|gb|ABQ69348.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingomonas wittichii RW1]
Length = 508
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 258/357 (72%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I L+ F+ I I S + I+K++ EYM+AFL++ L++G F A D L
Sbjct: 71 WALGIDGIALLLIVLSVFLMPICIAASWEAIEKRVPEYMAAFLLMETLMVGVFAAQDLFL 130
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LMLI+M+++ + +F I
Sbjct: 131 FYIFFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLIAMLWMVSEAGTTF-IP 189
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q WLF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 190 ALMAYDFPPEAQTWLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 249
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP AS L++ LS+++I+ SLIA+VQ D+KKLIAYSS+AHM FVT+
Sbjct: 250 YGFVRFSLPMFPVASAELMWLVMGLSMVAIVVTSLIALVQEDMKKLIAYSSVAHMAFVTI 309
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F + I+GA++ M+ H L+S A+F+ +G +Y++M TR I +GG+ N +P +++ F
Sbjct: 310 GLFAFNRQGIEGALMVMLGHGLVSGALFLCVGVIYDRMHTREIVRYGGLSNNMPKYAMLF 369
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ ++ A + + + + +T +I AAY L L I +
Sbjct: 370 LLFTMASVGLPGTSNFVGEFLSLVGAYQISSWVAFVATTGIITGAAYMLYLYARIAY 426
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 96/179 (53%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F +++ L +++
Sbjct: 215 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFVRFSLPMFPVASAELMWLVMG 273
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ + L+ ++Q D+K++IAYS+++ + ++T+GL G+ ++ ++ H
Sbjct: 274 LSMVAIVVTSLIALVQEDMKKLIAYSSVAHMAFVTIGLFAFNRQGIEG---ALMVMLGHG 330
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ VG P S F +
Sbjct: 331 LVSGALFLCVG-VIYDRMHTREIVRYGGLSNNMPKYAMLFLLFTMASVGLPGTSNFVGE 388
Score = 43.9 bits (102), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 131/304 (43%), Gaps = 40/304 (13%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L + +M+ + +L Y+ E L+ + L + I + I++S K+F+ +L
Sbjct: 112 FLLMETLMVGVFAAQDLFLFYIFFEAGLIPMYLIIGIWGGADRIYAS---YKFFLYTLLG 168
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT + + + L + K+ + P H W
Sbjct: 169 SVLMLIAMLWMVSEAGT----TFIPALMAYDFPPEAQTWLFLAFFASFAVKMPMWPVHTW 224
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPL--VINWQKILLI--LAIFSLI 758
+PD + A +++L+ L + ++ LP+ V + + + L+ L++ +++
Sbjct: 225 LPDAHVQAPTAGSVILAGV----LLKMGGYGFVRFSLPMFPVASAELMWLVMGLSMVAIV 280
Query: 759 IGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII 813
+ ++ A+ Q + K++IAYSS+AHM GL F+ I+ + ++ LF +
Sbjct: 281 VTSLIALVQEDMKKLIAYSSVAHMAFVTIGLFAFNRQGIEGALMVMLGHGLVSGALFLCV 340
Query: 814 TYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
I+ + T E+ + GL P A++ ++F + G P T F
Sbjct: 341 GVIYDRM---------------HTREIVRYGGLSNNMPKYAMLFLLFTMASVGLPGTSNF 385
Query: 874 YAKF 877
+F
Sbjct: 386 VGEF 389
>gi|445498164|ref|ZP_21465019.1| NADH-quinone oxidoreductase subunit L [Janthinobacterium sp. HH01]
gi|444788159|gb|ELX09707.1| NADH-quinone oxidoreductase subunit L [Janthinobacterium sp. HH01]
Length = 697
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
M+NN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR
Sbjct: 141 MANNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIVANMKAFLVNRVGDFGFILGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSMDYQEVFAKKEQLMTMTLPGTDWALLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS IL IG+ITA FMG LGIIQNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVIGSITALFMGFLGIIQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGSSAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 145/311 (46%), Gaps = 23/311 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMANNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIVANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+++ Q +F + L + ++L ++ + + +G K P
Sbjct: 191 IL-GIGLLLAYAGSMDYQEVFAKKEQLMTMTLPGTDWALLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFILVIGSITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ +S ++ +F+ F + +
Sbjct: 308 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGSSAYSVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSI 415
Query: 880 FEKIFETQKIW 890
E + ET IW
Sbjct: 416 IEAVAETH-IW 425
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 292 TALS-FILVIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGSSAYSVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + I N GG+ +P + ++ SLA P S
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGSLALIGTPFFS 407
Query: 546 GFIGEFMIILSAVK 559
GF + II + +
Sbjct: 408 GFYSKDSIIEAVAE 421
>gi|415906407|ref|ZP_11552702.1| NADH dehydrogenase I chain L [Herbaspirillum frisingense GSF30]
gi|407763129|gb|EKF71846.1| NADH dehydrogenase I chain L [Herbaspirillum frisingense GSF30]
Length = 657
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR+G
Sbjct: 102 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGFILGIGLLLAY 161
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 162 AGSMNYNEVFAKRAELATLTLPGTDWMLLTVACICLFVGAMGKSAQFPLHVWLPDSMEGP 221
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS IL IGAITA FMG LG +QNDIKR
Sbjct: 222 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVIGAITALFMGFLGTMQNDIKR 281
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 282 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 341
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 342 GLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 375
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I F+ K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 195 ICLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 252
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I+ + I+ +++ + +Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 253 TALS-FILVIGAITALFMGFLGTMQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 308
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 309 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLLGSLALIGTPFFS 368
Query: 546 GFIGEFMIILSAVK 559
GF + II +A +
Sbjct: 369 GFYSKDSIIEAAAE 382
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 144/309 (46%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + +A +K F++ + GF
Sbjct: 92 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGF 151
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G++ +F + L + +L ++ + + VG K P
Sbjct: 152 IL-GIGLLLAYAGSMNYNEVFAKRAELATLTLPGTDWMLLTVACICLFVGAMGKSAQFPL 210
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-ILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ L L IL+I AI +L
Sbjct: 211 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFILVIGAITALF 268
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + + Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 269 MGFLGTM-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 321
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 322 -LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 375
Query: 879 IFEKIFETQ 887
I E E+
Sbjct: 376 IIEAAAESH 384
>gi|300311106|ref|YP_003775198.1| NADH dehydrogenase I subunit L [Herbaspirillum seropedicae SmR1]
gi|300073891|gb|ADJ63290.1| transmembrane NADH dehydrogenase I (Chain L) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 696
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR+G
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGFILGIGLLLAY 200
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSMNYTEVFDKRAELAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS IL IGAITA FMG LG +QNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVIGAITALFMGFLGTMQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 355 QLSITKIEQIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLK 408
QL++ + W+ +T F+ K +P+H WLPD+ +E PT ++I AA M+
Sbjct: 218 QLTLPGTD--WMLLTVACICLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVT 274
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
G + + R S P+F + S I+ + I+ +++ + +Q DIK+++AYS+++ +G+
Sbjct: 275 AGIFMVTRMS-PLFELSDTALS-FILVIGAITALFMGFLGTMQNDIKRVVAYSTLSQLGY 332
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHF 527
+T+ L + A+ +++HA + +F+ G + + + N GG+ +P
Sbjct: 333 MTVA---LGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPIT 389
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ ++ SLA P SGF + II +A +
Sbjct: 390 WITSLLGSLALIGTPFFSGFYSKDSIIEAAAE 421
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 145/309 (46%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + +A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G++ +F+ + L + +L ++ + + VG K P
Sbjct: 191 IL-GIGLLLAYAGSMNYTEVFDKRAELAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-ILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ L L IL+I AI +L
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFILVIGAITALF 307
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + + Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 308 MGFLGTM-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 360
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 361 -LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Query: 879 IFEKIFETQ 887
I E E+
Sbjct: 415 IIEAAAESH 423
>gi|409405601|ref|ZP_11254063.1| transmembrane NADH dehydrogenase I subunit L [Herbaspirillum sp.
GW103]
gi|386434150|gb|EIJ46975.1| transmembrane NADH dehydrogenase I subunit L [Herbaspirillum sp.
GW103]
Length = 696
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR+G
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGFILGIGLLLAY 200
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSMNYTEVFAKRAELAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS IL IGAITA FMG LG +QNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVIGAITALFMGFLGTMQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 355 QLSITKIEQIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLK 408
QL++ + W+ +T F+ K +P+H WLPD+ +E PT ++I AA M+
Sbjct: 218 QLTLPGTD--WMLLTVACICLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVT 274
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
G + + R S P+F + S I+ + I+ +++ + +Q DIK+++AYS+++ +G+
Sbjct: 275 AGIFMVTRMS-PLFELSDTALS-FILVIGAITALFMGFLGTMQNDIKRVVAYSTLSQLGY 332
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHF 527
+T+ L + A+ +++HA + +F+ G + + + N GG+ +P
Sbjct: 333 MTVA---LGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPIT 389
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ ++ SLA P SGF + II +A +
Sbjct: 390 WITSLLGSLALIGTPFFSGFYSKDSIIEAAAE 421
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 144/309 (46%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + +A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G++ +F + L + +L ++ + + VG K P
Sbjct: 191 IL-GIGLLLAYAGSMNYTEVFAKRAELAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-ILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ L L IL+I AI +L
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFILVIGAITALF 307
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + + Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 308 MGFLGTM-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 360
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 361 -LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Query: 879 IFEKIFETQ 887
I E E+
Sbjct: 415 IIEAAAESH 423
>gi|113170508|ref|YP_717299.1| nad4 [Ostreococcus tauri]
gi|112806915|emb|CAL36421.1| unnamed protein product [Ostreococcus tauri]
Length = 489
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 263/367 (71%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ N+ +++GIDG+SL+F+ LT F+ + +LIS +K + E++ AFL+L ++
Sbjct: 69 WLSVLNMNFYVGIDGISLFFMILTTFLVPVCLLISWQSVKHLVREFLVAFLLLESFMLAV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+F+IIG WG R AA +FFLYTL+GSL ML++++ +Y+
Sbjct: 129 FCMLDLLLFYVFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLIGSLFMLLAILLIYF 188
Query: 343 -ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ +L H + ++ Q++L++ FF++FA+K+P+ P H WLP+AHVEAPT GSVI
Sbjct: 189 QVGTTDLQVL--HTVEFSERRQLFLWVAFFLSFAVKVPMIPFHIWLPEAHVEAPTSGSVI 246
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ YF+ LI T+S+I IIY S + QID+KK+IAYS
Sbjct: 247 LAGILLKLGTYGFLRFSIPLFPEATIYFTPLIYTMSVIGIIYASFTTLRQIDLKKIIAYS 306
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHMGFVTLG+F L ++GA++ M+SH ++SA+F+ IG LY++ TRLI +GG++
Sbjct: 307 SVAHMGFVTLGLFSLNMQGVEGAVLLMLSHGFVASALFLCIGILYDRTHTRLIKYYGGLV 366
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+P F+ FF IF+L N SLPGTS F+GEF+I++ + N I L +T +I AYS+
Sbjct: 367 QTMPLFAFFFFIFTLGNLSLPGTSSFVGEFLILVGVFQTNTFIATLAATGMILGGAYSIW 426
Query: 582 LSKNIIF 588
L ++F
Sbjct: 427 LYNRVVF 433
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 17/179 (9%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P H WLP++ +E PT S ++ A ++ G + R S PLF + + +++
Sbjct: 221 VKVPMIPFHIWLPEAHVEAPTSGSVIL-AGILLKLGTYGFLRFSIPLFPEATIYFTPLIY 279
Query: 107 ----IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTH 159
IG I A F L Q D+K+IIAYS+++ +G++T+G L + ++ +++H
Sbjct: 280 TMSVIGIIYASFTTLR---QIDLKKIIAYSSVAHMGFVTLGLFSLNMQGVEGAVLLMLSH 336
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL---IGLLSLVGAPFFSG 215
F + LFL G I+ + H + I+ GGL + MP+ +G LSL G F G
Sbjct: 337 GFVASALFLCIG-ILYDRTHTRLIKYYGGLVQTMPLFAFFFFIFTLGNLSLPGTSSFVG 394
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 24/292 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + AA ++F+ ++ S FML I ++Y GT
Sbjct: 133 DLLLFYVFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLIGSLFMLLAILLIYFQVGT 192
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ + + ++ + L ++ L + K+ + PFH+W+P+ + G+ I+
Sbjct: 193 TDLQ-VLHTVEFSERRQLFLWVAFFL---SFAVKVPMIPFHIWLPEAHVEAPTSGSVILA 248
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I I + ++ +++ +I + + + Q + K++I
Sbjct: 249 GILL----KLGTYGFL-RFSIPLFPEATIYFTPLIYTMSVIGIIYASFTTLRQIDLKKII 303
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHMG + + S+ + + ++++ F F I +L + T
Sbjct: 304 AYSSVAHMGFVTLGLFSLNM--------QGVEGAVLLMLSHGFVASALFLCIGILYDRT- 354
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET 886
T + + GL Q P A IF P T F +F I +F+T
Sbjct: 355 -HTRLIKYYGGLVQTMPLFAFFFFIFTLGNLSLPGTSSFVGEFLILVGVFQT 405
>gi|395493011|ref|ZP_10424590.1| NADH-quinone oxidoreductase subunit M [Sphingomonas sp. PAMC 26617]
Length = 500
Score = 350 bits (898), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 256/355 (72%), Gaps = 2/355 (0%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
LG+DG +L + L+ F+ + I S + + ++ EYM+AFL+ L+IG F A D LFY
Sbjct: 65 LGLDGFALLLVMLSVFLMPVCIGASWVAVTNRVQEYMAAFLVTEVLMIGTFAAQDLFLFY 124
Query: 294 IFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW 353
IFFEA LIP+++IIG WGG NR YA+ KFFLYTL+GS+LML++M+++ + S +I +
Sbjct: 125 IFFEAGLIPMYLIIGIWGGVNRIYASYKFFLYTLLGSVLMLVAMLWMANFAGTS-DIPTL 183
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
+ Q +L++ FF +FA+K+P+WP HTWLPDAHV+APT GSVILA ++LKLG YG
Sbjct: 184 LRTDFPVQAQTFLWLAFFASFAVKMPMWPFHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 243
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
LRFSLP+FP+AS + L++ LS I++IY SL+A+VQ D+KKLIAYSS+AHM VT+G+
Sbjct: 244 FLRFSLPMFPEASAQLTWLVLGLSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGL 303
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
F + I+GA+I M+SH L+S+A+F+ +G +Y+++ TR IS +GG+ +P ++V F+
Sbjct: 304 FAFNRQGIEGAMIVMLSHGLVSAALFLCVGVIYDRLHTREISRYGGLAINMPRYAVLFLF 363
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++A+ LPGTSGF+GEF+ + + + I +L +T +I AAY L L + ++F
Sbjct: 364 FTMASIGLPGTSGFVGEFLSLAGTYRVSTVITLLCTTGIILGAAYMLYLYRRVVF 418
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ ++L
Sbjct: 207 KMPMWPFHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPEASAQLTWLVLG 265
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q+D+K++IAYS+++ + +T+GL G+ ++ +++H
Sbjct: 266 LSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGIEG---AMIVMLSHG 322
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + L ++ +G P SGF +
Sbjct: 323 LVSAALFLCVG-VIYDRLHTREISRYGGLAINMPRYAVLFLFFTMASIGLPGTSGFVGE 380
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 56/328 (17%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F++ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 104 FLVTEVLMIGTFAAQDLFLFYIFFEAGLIPMYLIIGIWGGVNRIYASY---KFFLYTLLG 160
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFH 700
S ML + + GT ++ ++ + V A + L + SF K+ + PFH
Sbjct: 161 SVLMLVAMLWMANFAGTSDIPTLLRT------DFPVQAQTFLWLAFFASFAVKMPMWPFH 214
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV------INWQKILL 750
W+PD + A +++L+ ++ +L ++ LP+ + W ++L
Sbjct: 215 TWLPDAHVQAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPEASAQLTW--LVL 264
Query: 751 ILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSC 805
L+ ++I ++ A+ Q + K++IAYSS+AHM GL F+ I+ + ++
Sbjct: 265 GLSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGIEGAMIVMLSHGLV 324
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
+ LF + I+ L T E+ + GL P A++ + F +
Sbjct: 325 SAALFLCVGVIYDRL---------------HTREISRYGGLAINMPRYAVLFLFFTMASI 369
Query: 866 GFPPTIGFYAKFFIFEKIFETQKIWLLL 893
G P T GF +F + + LL
Sbjct: 370 GLPGTSGFVGEFLSLAGTYRVSTVITLL 397
>gi|404253336|ref|ZP_10957304.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sphingomonas sp. PAMC 26621]
Length = 509
Score = 350 bits (898), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 256/355 (72%), Gaps = 2/355 (0%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
LGIDG +L + L+ F+ + I S + + ++ EYM+AFL+ L+IG F A D LFY
Sbjct: 74 LGIDGFALLLVMLSVFLMPVCIGASWVAVTNRVQEYMAAFLVTEVLMIGTFAAQDLFLFY 133
Query: 294 IFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW 353
IFFEA LIP+++IIG WGG NR YA+ KFFLYTL+GS+LML++M+++ + S +I +
Sbjct: 134 IFFEAGLIPMYLIIGIWGGVNRIYASYKFFLYTLLGSVLMLVAMLWMANFAGTS-DIPTL 192
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
+ Q +L++ FF +FA+K+P+WP HTWLPDAHV+APT GSVILA ++LKLG YG
Sbjct: 193 LRTDFPVKAQTFLWLAFFASFAVKMPMWPFHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 252
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
LRFSLP+FP+AS + L++ LS I++IY SL+A+VQ D+KKLIAYSS+AHM VT+G+
Sbjct: 253 FLRFSLPMFPEASAQLTWLVLGLSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGL 312
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
F + I+GA+I M+SH L+S+A+F+ +G +Y+++ TR IS +GG+ +P ++V F+
Sbjct: 313 FAFNRQGIEGAMIVMLSHGLVSAALFLCVGVIYDRLHTREISRYGGLAINMPRYAVLFLF 372
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++A+ LPGTSGF+GEF+ + + + I +L +T +I AAY L L + ++F
Sbjct: 373 FTMASIGLPGTSGFVGEFLSLAGTYRVSTVITLLCTTGIILGAAYMLYLYRRVVF 427
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K +P HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ ++L
Sbjct: 216 KMPMWPFHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPEASAQLTWLVLG 274
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ AI + L+ ++Q+D+K++IAYS+++ + +T+GL G+ ++ +++H
Sbjct: 275 LSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGIEG---AMIVMLSHG 331
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G +I + H ++I GGL MP + L ++ +G P SGF +
Sbjct: 332 LVSAALFLCVG-VIYDRLHTREISRYGGLAINMPRYAVLFLFFTMASIGLPGTSGFVGE 389
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 56/328 (17%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F++ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 113 FLVTEVLMIGTFAAQDLFLFYIFFEAGLIPMYLIIGIWGGVNRIYASY---KFFLYTLLG 169
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFH 700
S ML + + GT ++ ++ + V A + L + SF K+ + PFH
Sbjct: 170 SVLMLVAMLWMANFAGTSDIPTLLRT------DFPVKAQTFLWLAFFASFAVKMPMWPFH 223
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV------INWQKILL 750
W+PD + A +++L+ ++ +L ++ LP+ + W ++L
Sbjct: 224 TWLPDAHVQAPTAGSVILAG--------VLLKLGGYGFLRFSLPMFPEASAQLTW--LVL 273
Query: 751 ILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSC 805
L+ ++I ++ A+ Q + K++IAYSS+AHM GL F+ I+ + ++
Sbjct: 274 GLSAIAVIYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNRQGIEGAMIVMLSHGLV 333
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
+ LF + I+ L T E+ + GL P A++ + F +
Sbjct: 334 SAALFLCVGVIYDRL---------------HTREISRYGGLAINMPRYAVLFLFFTMASI 378
Query: 866 GFPPTIGFYAKFFIFEKIFETQKIWLLL 893
G P T GF +F + + LL
Sbjct: 379 GLPGTSGFVGEFLSLAGTYRVSTVITLL 406
>gi|238650813|ref|YP_002916668.1| NADH dehydrogenase subunit M [Rickettsia peacockii str. Rustic]
gi|238624911|gb|ACR47617.1| NADH dehydrogenase subunit M [Rickettsia peacockii str. Rustic]
Length = 493
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 189/380 (49%), Positives = 265/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ L IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GSL L+
Sbjct: 126 MESLCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSLFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA+I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILASILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + + G + + PL + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILASILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 29/286 (10%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSLFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
+ +L IF + +NI + I + + K+ I PFH W+PD + G+ I
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAPTSGSVI 252
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLI-LAIFSLIIGNVSAITQYNFK 771
+ ++LL KL + + LL C P V I +I L++ ++I ++ A+ Q + K
Sbjct: 253 LASILL----KLGGYGFLRVLLPLC--PSVSQEFAIYVIYLSVIAIIYASLVALAQKDMK 306
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 307 KMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL-------- 356
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|227822755|ref|YP_002826727.1| NADH-ubiquinone oxidoreductase subunit M3 [Sinorhizobium fredii
NGR234]
gi|227341756|gb|ACP25974.1| NADH-ubiquinone oxidoreductase chain M3 [Sinorhizobium fredii
NGR234]
Length = 491
Score = 350 bits (897), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 169/367 (46%), Positives = 253/367 (68%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
++ W+ I Y LG+DG+S F+ LTA + I +L S + I +K+ E+M A L + L
Sbjct: 62 ERYPWVPAIGITYALGVDGISALFVFLTALLGWICVLASWVAIDRKVKEFMVALLSMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD LFY+ +EA LIP+++IIG WGG+ R YAA KFFLYTL GSLL LI +I
Sbjct: 122 MLGVFSALDLFLFYVCWEAMLIPMYLIIGVWGGAGRVYAAFKFFLYTLAGSLLFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F IAFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFHGGQTFDILALTAQDLPFDVQSWLFFAFLIAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVT+GIF L ++G I+QM +H + + A+F+ +G +Y + TR I+++GG
Sbjct: 302 YSSISHMGFVTMGIFSLNLRGLEGGILQMFNHGVTTGALFLFVGVIYERTHTRSIADYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ V P ++ F +F+L++ +LPGT+ F+GE +++ N +G + SAAY
Sbjct: 362 LMKVAPVYTGFLALFTLSSMALPGTNSFVGELLVLSGGFAANMAVGTAAVLGALLSAAYL 421
Query: 580 LCLSKNI 586
L + + +
Sbjct: 422 LGMYRKV 428
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFSLNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 338 GALFLFVG-VIYERTHTRSIADYGGLMKVAPV 368
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
AA K+F+ + S L G+ +LY G F+++ L ++ V + ++
Sbjct: 160 AAFKFFLYTLAGSLLFLIGVIVLYFHGG-----QTFDILALTAQDLPFDVQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASVYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIK 793
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I S+
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFSLN 319
>gi|124266607|ref|YP_001020611.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
gi|124259382|gb|ABM94376.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
Length = 670
Score = 350 bits (897), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY KP AI AN+KAFL+NR
Sbjct: 136 MSNNMLQLFFGWEAVGLVSYLLIGFWYTKPTAIFANMKAFLVNRVGDFGFILGIGLLLAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 GGTLNYGELFAQAPELAKQGFPGTDWMLITVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS ++ IGAITA FMG LGIIQNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVMVIGAITALFMGFLGIIQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY++++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGASAYSIAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 376 GLRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 409
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 221 WMLITVACICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 279
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 280 -PLFELSDTALS-FVMVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 334
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + + I N GG+ +P + ++ SLA
Sbjct: 335 SAYSIAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGSLA 394
Query: 538 NCSLPGTSGFIGEFMII 554
P SGF + II
Sbjct: 395 LIGTPLFSGFYSKDSII 411
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 142/314 (45%), Gaps = 29/314 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN+L ++ G E + L +LI ++ IF++ +K F++ +
Sbjct: 126 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWYTKPTAIFAN---MKAFLVNRVGD 182
Query: 644 -GFMLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L GTL +F + ++ ++ + + +G K
Sbjct: 183 FGFIL-GIGLLLAYGGTLNYGELFAQAPELAKQGFPGTDWMLITVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L ++++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVMVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 300 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSIAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLLGSLALIGTPLFSGFYSK 407
Query: 877 FFIFEKIFETQKIW 890
I E + +W
Sbjct: 408 DSIIEAV-HASHLW 420
>gi|402827188|ref|ZP_10876291.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingomonas sp. LH128]
gi|402259288|gb|EJU09548.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingomonas sp. LH128]
Length = 511
Score = 350 bits (897), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/356 (46%), Positives = 258/356 (72%), Gaps = 1/356 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLF 292
Y LGIDG++L I L+ F+ I I S I+K++ EYM+AFL++ ++G F A D LF
Sbjct: 73 YALGIDGIALLLIMLSVFLMPICIGASRSIEKRVGEYMAAFLLVEVFMLGVFMAQDMYLF 132
Query: 293 YIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILS 352
Y+FFEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LML++M+++ + + S +I +
Sbjct: 133 YMFFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLVAMLWMVHTAGTS-DIPT 191
Query: 353 WHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCY 412
Q WL++ FF +FA+K+P+WP+HTWLP AHV+APT GSVILA ++LK+G Y
Sbjct: 192 LMAYDFDPHVQTWLWLAFFASFAVKMPMWPVHTWLPAAHVQAPTGGSVILAGVLLKMGGY 251
Query: 413 GLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLG 472
G +RFSLP+FP+AS YF L+ LS+ +++ SLIA+VQ D+KKLIAYSS+AHM VT+G
Sbjct: 252 GFIRFSLPMFPEASVYFGPLVWGLSMAAVVITSLIALVQSDMKKLIAYSSVAHMAIVTIG 311
Query: 473 IFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFI 532
+F ++G+++ M+SH L++ A+F+ +G +Y+++ TR IS +GG+ +P ++VFF+
Sbjct: 312 LFAFNVQGLEGSMLVMLSHGLVAGALFLCVGVIYDRLHTREISRYGGLAINMPRYAVFFL 371
Query: 533 IFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+F++A+ LPGTSGF+GEF+ + + + ++ +T +I AAY L L + ++F
Sbjct: 372 LFTMASIGLPGTSGFVGEFLSLGGIYQVSTWTALICTTGIILGAAYMLYLYRRVVF 427
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLP + ++ PT S ++ A ++ G + R S P+F ++ +++
Sbjct: 216 KMPMWPVHTWLPAAHVQAPTGGSVIL-AGVLLKMGGYGFIRFSLPMFPEASVYFGPLVWG 274
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+D+K++IAYS+++ + +T+GL V S+ +++H
Sbjct: 275 LSMAAVVITSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMLVMLSHGLVA 334
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ +G P SGF +
Sbjct: 335 GALFLCVG-VIYDRLHTREISRYGGLAINMPRYAVFFLLFTMASIGLPGTSGFVGE 389
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 140/327 (42%), Gaps = 37/327 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F+LG + M L ++ L+ + L + I + I++S K+F+ +L S M
Sbjct: 118 VFMLG-VFMAQDMYLFYMFFEAGLIPMYLIIGIWGGADRIYAS---YKFFLYTLLGSVLM 173
Query: 647 LYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDV 706
L + + GT ++ ++ + + V L + K+ + P H W+P
Sbjct: 174 LVAMLWMVHTAGTSDIPTLMA----YDFDPHVQTWLWLAFFASFAVKMPMWPVHTWLPAA 229
Query: 707 Y----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNV 762
+ G S+I+ +L K+ + I R + + + ++ L++ +++I ++
Sbjct: 230 HVQAPTGGSVILAGVLL---KMGGYGFI-RFSLPMFPEASVYFGPLVWGLSMAAVVITSL 285
Query: 763 SAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
A+ Q + K++IAYSS+AHM GL F++ ++ S ++ LF + I+
Sbjct: 286 IALVQSDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMLVMLSHGLVAGALFLCVGVIY 345
Query: 818 AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
L T E+ + GL P A+ ++F + G P T GF +F
Sbjct: 346 DRL---------------HTREISRYGGLAINMPRYAVFFLLFTMASIGLPGTSGFVGEF 390
Query: 878 FIFEKIFETQKIWLLLLIIMCSLIGAK 904
I++ W L+ ++GA
Sbjct: 391 LSLGGIYQVST-WTALICTTGIILGAA 416
>gi|390559137|ref|ZP_10243498.1| NADH-quinone oxidoreductase, subunit M [Nitrolancetus hollandicus
Lb]
gi|390174293|emb|CCF82790.1| NADH-quinone oxidoreductase, subunit M [Nitrolancetus hollandicus
Lb]
Length = 532
Score = 349 bits (896), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 181/371 (48%), Positives = 256/371 (69%), Gaps = 6/371 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ + Y LG+DG+S+ I LT +++I I+ S D IK ++ EYM A L+L +IG
Sbjct: 69 WLPGVGVAYRLGVDGISVPLIVLTTLLSVISIIASWDPIKNRVREYMIAMLLLETGMIGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY-- 341
F +LD LFYIF+E LIP+ ++IG WG NR YAA+KFFLYTL GSLLML+ +I +Y
Sbjct: 129 FISLDLFLFYIFWEVMLIPMALLIGIWGSKNRVYAAVKFFLYTLAGSLLMLVGIIAMYQS 188
Query: 342 YISN---KSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
Y ++ N+ Q QI +F+ FF+AFAIK+P+WP HTWLPDAHVEAPT G
Sbjct: 189 YFEETGIRTLNVQELAQGHYGYTFQILVFLAFFVAFAIKVPMWPFHTWLPDAHVEAPTAG 248
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILA ++LK+G YGLLRF+LP+FP+A+ + II LS+I+IIY +L+A+VQ D+KKL+
Sbjct: 249 SVILAGVLLKMGGYGLLRFNLPLFPEATKALAPYIIVLSVIAIIYGALVALVQPDMKKLV 308
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS++HMGFVTLGIF LT + GA+I MISH L++ A+F+ +G +YN+ TRLI FG
Sbjct: 309 AYSSVSHMGFVTLGIFSLTTQGLYGAMIVMISHGLVTGALFLLVGMIYNRGHTRLIKAFG 368
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ +P ++ FF F A+ LPG SGF+GEF+ ++ + G ++ +I SA Y
Sbjct: 369 GLATNMPVYATFFGFFMFASVGLPGLSGFVGEFLALIGTFRVYPWAGAVSMVVVILSAWY 428
Query: 579 SLCLSKNIIFV 589
+ + + +++V
Sbjct: 429 MMWMYQRVVWV 439
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P HTWLPD+ +E PT A ++I A ++ G + + R + PLF + AL+ + +
Sbjct: 227 KVPMWPFHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGLLRFNLPLFPEATKALAPYIIV 285
Query: 108 GAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLM----THAFF 162
++ A G L+ ++Q D+K+++AYS++S +G++T+G+ S T ++ M +H
Sbjct: 286 LSVIAIIYGALVALVQPDMKKLVAYSSVSHMGFVTLGI-FSLTTQGLYGAMIVMISHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I N H + I+ GGL MP+ + + VG P SGF +
Sbjct: 345 TGALFLLVG-MIYNRGHTRLIKAFGGLATNMPVYATFFGFFMFASVGLPGLSGFVGE 400
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 133/298 (44%), Gaps = 49/298 (16%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L Y+ E+M + + +LI KN ++ AA+K+F+ + S ML GI +Y
Sbjct: 133 DLFLFYIFWEVMLIPMALLIGIWGSKNRVY---AAVKFFLYTLAGSLLMLVGIIAMY--- 186
Query: 658 GTLELQSIFNVIKLNNINCSVLA----------LSLLLIIVGLSFKLGISPFHMWVPDVY 707
QS F + +N LA L L V + K+ + PFH W+PD +
Sbjct: 187 -----QSYFEETGIRTLNVQELAQGHYGYTFQILVFLAFFVAFAIKVPMWPFHTWLPDAH 241
Query: 708 QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL----LILAIFSLIIGNVS 763
A +++L+ L + L++ LPL K L ++L++ ++I G +
Sbjct: 242 VEAPTAGSVILAGV----LLKMGGYGLLRFNLPLFPEATKALAPYIIVLSVIAIIYGALV 297
Query: 764 AITQYNFKRMIAYSSIAHMGLMLFSIISIKTS--HNNLIIFNSCDSGLFYIITYIFAILG 821
A+ Q + K+++AYSS++HMG + I S+ T + +I+ S ++T
Sbjct: 298 ALVQPDMKKLVAYSSVSHMGFVTLGIFSLTTQGLYGAMIVMISHG-----LVT------- 345
Query: 822 AFGVIILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
G + LL N+ T + F GL P A FMF+ G P GF +F
Sbjct: 346 --GALFLLVGMIYNRGHTRLIKAFGGLATNMPVYATFFGFFMFASVGLPGLSGFVGEF 401
>gi|374092062|gb|AEY83695.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Porella
platyphylla]
Length = 437
Score = 349 bits (895), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 177/366 (48%), Positives = 259/366 (70%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+F E+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + ++ ++ QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVIL
Sbjct: 151 QTGTT-DLXILPTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 209
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I+LKLG Y LR S+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYSS
Sbjct: 210 AGILLKLGTYXFLRXSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYSS 269
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG+++
Sbjct: 270 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRIVKYYGGLVS 329
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P S F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYS L
Sbjct: 330 TMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSPWL 389
Query: 583 SKNIIF 588
++F
Sbjct: 390 YNRVVF 395
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYXFLRXSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + + ++ GGL MPI+ L L+ + P S F
Sbjct: 303 SALFLCVG-VLYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSF 354
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ LE + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+L ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLX----ILPTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYXFL-RXSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +G +L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVG------VLYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|91203932|emb|CAJ71585.1| similar to NADH:ubiquinone oxidoreductase subunit M [Candidatus
Kuenenia stuttgartiensis]
Length = 525
Score = 349 bits (895), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 177/373 (47%), Positives = 268/373 (71%), Gaps = 5/373 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+K WI F + Y LGIDG+SL+ + LT FIT I I S ++K+ + EYM A L+L +
Sbjct: 62 EKLRWIPSFGVSYHLGIDGISLFMVLLTTFITPIAIFASWNVKRNVKEYMIAMLVLETGM 121
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
+G F +LD LFY+F+E LIP+++IIG WGG R YAAIKFF+YT+ GS+ ML+++I L
Sbjct: 122 VGVFVSLDVFLFYVFWELMLIPMYLIIGIWGGQRRIYAAIKFFVYTMAGSVFMLLAIIGL 181
Query: 341 YYISNK-----SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+++++K +FN+L +++L I+ Q WLF+ FF+AFAIK+P++P+HTWLPDAHVEAP
Sbjct: 182 FFLNHKATGEYTFNLLEFYRLDISYAVQFWLFLAFFLAFAIKVPMFPLHTWLPDAHVEAP 241
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG +RF LP+FP+ S+ F +I ++++ IIY +L+AMVQ D+K
Sbjct: 242 TAGSVILAGVLLKMGTYGFIRFCLPLFPEVSHSFIPVISWMAIVGIIYGALVAMVQDDLK 301
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KL+AYSS++H+GFV LGIF I+G I QMI+H L + A+F+ +G LY++ TRLIS
Sbjct: 302 KLVAYSSVSHLGFVMLGIFAFNIQGIEGGITQMINHGLSTGALFLIVGMLYDRRHTRLIS 361
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
++GG+ IP F++ F+I + ++ LPG +GF+GEF+I++ K + ++ +I +
Sbjct: 362 DYGGLTKQIPVFAILFMIVTFSSIGLPGLNGFVGEFLILVGVFKSRILYASIATSGIILA 421
Query: 576 AAYSLCLSKNIIF 588
A Y L + + ++F
Sbjct: 422 AIYMLWMFQRVMF 434
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K FPLHTWLPD+ +E PT A ++I A ++ G + R PLF E+S++ + +I +
Sbjct: 223 KVPMFPLHTWLPDAHVEAPT-AGSVILAGVLLKMGTYGFIRFCLPLFPEVSHSFIPVISW 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVS-----IFHLMTHAF 161
+ + + L+ ++Q+D+K+++AYS++S LG+ V LG+ A+ + I ++ H
Sbjct: 282 MAIVGIIYGALVAMVQDDLKKLVAYSSVSHLGF--VMLGIFAFNIQGIEGGITQMINHGL 339
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + +H + I + GGL K +P+ I +I S +G P +GF +
Sbjct: 340 STGALFLIVG-MLYDRRHTRLISDYGGLTKQIPVFAILFMIVTFSSIGLPGLNGFVGE 396
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 29/296 (9%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTL 660
L ++ L L+ + L + I + I+ AAIK+F+ + S FML I L+ +
Sbjct: 132 LFYVFWELMLIPMYLIIGIWGGQRRIY---AAIKFFVYTMAGSVFMLLAIIGLFFLNHKA 188
Query: 661 ELQSIFNVIKLNNINCS--VLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIII 714
+ FN+++ ++ S V L + + K+ + P H W+PD + A S+I+
Sbjct: 189 TGEYTFNLLEFYRLDISYAVQFWLFLAFFLAFAIKVPMFPLHTWLPDAHVEAPTAGSVIL 248
Query: 715 T---LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFK 771
L + T + + ++ + +P VI+W +AI +I G + A+ Q + K
Sbjct: 249 AGVLLKMGTYGFIRFCLPLFPEVSHSFIP-VISW------MAIVGIIYGALVAMVQDDLK 301
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
+++AYSS++H+G ++ I + + G+ +I + + F ++ +L +
Sbjct: 302 KLVAYSSVSHLGFVMLGIFAFNI--------QGIEGGITQMINHGLSTGALFLIVGMLYD 353
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
T + + GL ++ P A++ MI FS G P GF +F I +F+++
Sbjct: 354 R--RHTRLISDYGGLTKQIPVFAILFMIVTFSSIGLPGLNGFVGEFLILVGVFKSR 407
>gi|451981549|ref|ZP_21929901.1| NADH-quinone oxidoreductase, subunit M [Nitrospina gracilis 3/211]
gi|451761222|emb|CCQ91165.1| NADH-quinone oxidoreductase, subunit M [Nitrospina gracilis 3/211]
Length = 521
Score = 349 bits (895), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 184/371 (49%), Positives = 266/371 (71%), Gaps = 6/371 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
WI + I Y +GIDG+SL +T F+T I IL S ++KK EYM A L LS ++G F
Sbjct: 65 WIPQWGISYHVGIDGISLLLYIMTTFLTFISILASWEVKKYTKEYMMAMLALSTGMLGVF 124
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS 344
ALD LFY+F+E LIP++IIIG WGG R YAA+KFF+YT +GSLLML+++I++Y+
Sbjct: 125 IALDFFLFYVFWEFQLIPMYIIIGVWGGPRRIYAAVKFFIYTAVGSLLMLVAIIWMYFHF 184
Query: 345 NKSFNILSW------HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
+++ + + L++T +Q WLF+ FF+AFAIK+P++P HTWLPDAHVEAPT G
Sbjct: 185 HETVGVFTTDILLITEHLNMTLDQQKWLFLAFFLAFAIKVPMFPFHTWLPDAHVEAPTAG 244
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SVILA ++LK+G YG LRF+LP+FP AS F I LS+I IIY +L+AMVQ D+KKL+
Sbjct: 245 SVILAGVLLKMGTYGFLRFNLPLFPVASNEFLPFIAGLSIIGIIYGALVAMVQEDLKKLV 304
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS++H+GFV LGIF +QGA++Q ++H + +SA+F+ +G +Y++ TRLI +FG
Sbjct: 305 AYSSVSHLGFVMLGIFAFNHYGLQGALLQNLNHGISTSALFLMVGMIYDRRHTRLIKDFG 364
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ VIP F+V F+I +L++ LPGT+GF+GEF+++L + N L +T +IF+A Y
Sbjct: 365 GLAKVIPMFTVCFMIVTLSSIGLPGTNGFVGEFLVLLGIFQVNGFYAGLATTGVIFAACY 424
Query: 579 SLCLSKNIIFV 589
L + + ++F+
Sbjct: 425 MLWMFQRVMFL 435
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K FP HTWLPD+ +E PT A ++I A ++ G + R + PLF + SN L I
Sbjct: 223 KVPMFPFHTWLPDAHVEAPT-AGSVILAGVLLKMGTYGFLRFNLPLFPVASNEFLPFIAG 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-GVSAYTV--SIFHLMTHAFFK 163
+ I + L+ ++Q D+K+++AYS++S LG++ +G+ + Y + ++ + H
Sbjct: 282 LSIIGIIYGALVAMVQEDLKKLVAYSSVSHLGFVMLGIFAFNHYGLQGALLQNLNHGIST 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ LFL G +I + +H + I++ GGL K +P+ + +I LS +G P +GF +
Sbjct: 342 SALFLMVG-MIYDRRHTRLIKDFGGLAKVIPMFTVCFMIVTLSSIGLPGTNGFVGE 396
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 24/200 (12%)
Query: 693 KLGISPFHMWVPDVYQGA----SIIIT---LLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
K+ + PFH W+PD + A S+I+ L + T L + ++ + LP +
Sbjct: 223 KVPMFPFHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPVASNEFLPFIAG- 281
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
L+I +I G + A+ Q + K+++AYSS++H+G ++ I + + +
Sbjct: 282 ------LSIIGIIYGALVAMVQEDLKKLVAYSSVSHLGFVMLGIFAFNHYGLQGALLQNL 335
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
+ G+ + +F ++G +I + +T D F GL + P + MI S
Sbjct: 336 NHGI--STSALFLMVG----MIYDRRHTRLIKD----FGGLAKVIPMFTVCFMIVTLSSI 385
Query: 866 GFPPTIGFYAKFFIFEKIFE 885
G P T GF +F + IF+
Sbjct: 386 GLPGTNGFVGEFLVLLGIFQ 405
>gi|399020469|ref|ZP_10722599.1| proton-translocating NADH-quinone oxidoreductase, chain N
[Herbaspirillum sp. CF444]
gi|398094884|gb|EJL85238.1| proton-translocating NADH-quinone oxidoreductase, chain N
[Herbaspirillum sp. CF444]
Length = 503
Score = 348 bits (894), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/315 (53%), Positives = 232/315 (73%), Gaps = 1/315 (0%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LGQM+MISGN+ LSIYLGLELMSL+L L+A +++N+ S+EAA+KYFILG L+SGF+LY
Sbjct: 120 LLGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDNVGSTEAAMKYFILGALASGFLLY 179
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GIS+LYG TG+LEL +F I ++ +VL ++ ++ GL+FKLG PFHMWVPDVY
Sbjct: 180 GISMLYGATGSLELNDVFRAIVSGTVDRNVLVFGIVFVVAGLAFKLGAVPFHMWVPDVYH 239
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TLL+ PKL+ F +++RLL++ LLPL I+WQ++L++LA+ S+IIGNV+AI Q
Sbjct: 240 GAPTPMTLLIGGAPKLAAFAMVFRLLVEGLLPLAIDWQQMLMVLAVLSIIIGNVTAIAQT 299
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM+AYS+I+HMG ML ++S N N+ S LFY ITY+ LG FGVI+L
Sbjct: 300 NIKRMLAYSTISHMGFMLLGMMSGVVDGNLFQAVNAYSSSLFYAITYVLTTLGTFGVILL 359
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
+ + + D LD F GL+QR+PW A IM+I MFSLAG PP +GFYAK + + + T +
Sbjct: 360 MARSGF-EADTLDDFKGLNQRSPWFAAIMLILMFSLAGIPPMVGFYAKLSVLQAVLGTGQ 418
Query: 889 IWLLLLIIMCSLIGA 903
IWL +L ++ SL+GA
Sbjct: 419 IWLAVLAVVFSLVGA 433
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 143/297 (48%), Gaps = 39/297 (13%)
Query: 318 AAIKFFLYTLMGSLLMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLF-ITFFIA-F 374
AA+K+F+ + S +L + LY + N + +S T + +F I F +A
Sbjct: 162 AAMKYFILGALASGFLLYGISMLYGATGSLELNDVFRAIVSGTVDRNVLVFGIVFVVAGL 221
Query: 375 AIKIPIWPMHTWLPDAHVEAPTEGSVILA--------AIMLKLGCYGLLRFSLPIFPDAS 426
A K+ P H W+PD + APT ++++ A++ +L GLL P+ D
Sbjct: 222 AFKLGAVPFHMWVPDVYHGAPTPMTLLIGGAPKLAAFAMVFRLLVEGLL----PLAID-- 275
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
+ +++ L+++SII ++ A+ Q +IK+++AYS+I+HMGF+ LG M++ + + G +
Sbjct: 276 --WQQMLMVLAVLSIIIGNVTAIAQTNIKRMLAYSTISHMGFMLLG--MMSGV-VDGNLF 330
Query: 487 QMISHALISSAMFISIGFLYNQMKT--------------RLISNFGGIINVIPHFSVFFI 532
Q ++ SS++F +I ++ + T + +F G+ P F+ +
Sbjct: 331 QAVNA--YSSSLFYAITYVLTTLGTFGVILLMARSGFEADTLDDFKGLNQRSPWFAAIML 388
Query: 533 IFSLANCSLPGTSGFIGEFMIILSAVKF-NFCIGVLTSTALIFSAAYSLCLSKNIIF 588
I + +P GF + ++ + + + VL + A Y L + KN+ F
Sbjct: 389 ILMFSLAGIPPMVGFYAKLSVLQAVLGTGQIWLAVLAVVFSLVGAFYYLRVIKNMYF 445
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAATMVTAGIFMITRM--SPLFELSNTALSIILF 106
K P H W+PD G PTP + LI A + A M+ R+ L L+ +++
Sbjct: 224 KLGAVPFHMWVPDVYHGAPTPMTLLIGGAPKLAA-FAMVFRLLVEGLLPLAIDWQQMLMV 282
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-----------GVSAYTVSIFH 155
+ ++ + I Q +IKR++AYST+S +G+M +G+ V+AY+ S+F+
Sbjct: 283 LAVLSIIIGNVTAIAQTNIKRMLAYSTISHMGFMLLGMMSGVVDGNLFQAVNAYSSSLFY 342
Query: 156 LMTHAFFKALLFLSAGSIIINMKHN----QDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
+T+ L L +I+ M + + + GL + P LI + SL G P
Sbjct: 343 AITY----VLTTLGTFGVILLMARSGFEADTLDDFKGLNQRSPWFAAIMLILMFSLAGIP 398
Query: 212 FFSGFYSK 219
GFY+K
Sbjct: 399 PMVGFYAK 406
>gi|406899486|gb|EKD42745.1| hypothetical protein ACD_73C00036G0002 [uncultured bacterium]
Length = 499
Score = 348 bits (894), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 179/376 (47%), Positives = 263/376 (69%), Gaps = 1/376 (0%)
Query: 214 SGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSA 272
SG Y + WI FNI YF+GIDG+SLW I LT F+T ++ L SL I K+ E++
Sbjct: 59 SGSYEFMELIPWIKTFNINYFMGIDGVSLWLILLTTFLTPLVFLGSLTSIIKRPKEFVVC 118
Query: 273 FLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLL 332
L+L ++G FCALD LFY+F+E LIP++ IIG WGG NR YAAIKFF+YT+ GS+L
Sbjct: 119 MLLLQAGMVGVFCALDLFLFYVFWEVMLIPMYFIIGIWGGDNRVYAAIKFFIYTMTGSVL 178
Query: 333 MLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
MLI++++LY+ +N SFN++ ++LS+T EQ WLF+ F +AFAIK+P++P HTWLPDAHV
Sbjct: 179 MLIAILWLYFKANHSFNLMELYELSLTPYEQYWLFLAFALAFAIKVPLFPFHTWLPDAHV 238
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
+APT GSVILA ++LK+G YG RF++P+FP A +I L++I I+Y +L+AMVQ
Sbjct: 239 QAPTAGSVILAGVLLKMGTYGFYRFAMPLFPHALLELQVWLIGLAVIGIVYGALVAMVQT 298
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
DIKKLIAYSS++H+G V LG+F L K ++ G + QM++H + + A+F+ +G LY + +R
Sbjct: 299 DIKKLIAYSSVSHLGVVMLGLFSLDKTAMLGGLYQMLNHGISTGALFLMVGMLYERTHSR 358
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
IS GG+ + P F F++ + ++ LP T+GF+GEF+ ++ + ++ +T +
Sbjct: 359 EISQHGGLAHTAPWFVTIFLVVTFSSIGLPLTNGFVGEFLSLVGTFRTFEWAAIIGATGV 418
Query: 573 IFSAAYSLCLSKNIIF 588
I SA Y L L++ + F
Sbjct: 419 ILSAIYMLWLAQRVFF 434
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K FP HTWLPD+ ++ PT A ++I A ++ G + R + PLF + L + L
Sbjct: 223 KVPLFPFHTWLPDAHVQAPT-AGSVILAGVLLKMGTYGFYRFAMPLFPHALLELQVWLIG 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q DIK++IAYS++S LG + +G L +A ++ ++ H
Sbjct: 282 LAVIGIVYGALVAMVQTDIKKLIAYSSVSHLGVVMLGLFSLDKTAMLGGLYQMLNHGIST 341
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ H+++I GGL P L+ S +G P +GF +
Sbjct: 342 GALFLMVG-MLYERTHSREISQHGGLAHTAPWFVTIFLVVTFSSIGLPLTNGFVGE 396
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 158/351 (45%), Gaps = 45/351 (12%)
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMIMISGN-------NLLSIYLGLELMSLTLCVLIA-- 620
T L+F + + + + FV+ +++ +G +L Y+ E+M + + +I
Sbjct: 97 TPLVFLGSLTSIIKRPKEFVVCMLLLQAGMVGVFCALDLFLFYVFWEVMLIPMYFIIGIW 156
Query: 621 SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLA 680
N ++ AAIK+FI + S ML I LY + FN+++L ++ +
Sbjct: 157 GGDNRVY---AAIKFFIYTMTGSVLMLIAILWLY-----FKANHSFNLMELYELSLTPYE 208
Query: 681 --LSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIITLLLSTTPKLSLFVIIYRLL 734
L + + K+ + PFH W+PD + A S+I+ +L + L
Sbjct: 209 QYWLFLAFALAFAIKVPLFPFHTWLPDAHVQAPTAGSVILAGVLLKMGTYGFYRFAMPLF 268
Query: 735 IKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT 794
LL L Q L+ LA+ ++ G + A+ Q + K++IAYSS++H+G+++ + S+
Sbjct: 269 PHALLEL----QVWLIGLAVIGIVYGALVAMVQTDIKKLIAYSSVSHLGVVMLGLFSLDK 324
Query: 795 SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCA 854
+ + GL+ ++ + + F ++ +L T ++ E+ GL PW
Sbjct: 325 T--------AMLGGLYQMLNHGISTGALFLMVGMLYERTHSR--EISQHGGLAHTAPWFV 374
Query: 855 LIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKG 905
I ++ FS G P T GF +F F T + W ++IGA G
Sbjct: 375 TIFLVVTFSSIGLPLTNGFVGEFLSLVGTFRTFE-W-------AAIIGATG 417
>gi|374092064|gb|AEY83696.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Ptilidium
pulcherrimum]
Length = 437
Score = 348 bits (894), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 181/367 (49%), Positives = 259/367 (70%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFSIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+F E+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++ +
Sbjct: 91 FCSLDLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFISF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILPTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG RFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILLKLGTYGFSRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P S F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYS
Sbjct: 329 STMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSPW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + +R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFSRFSIPMFPEATLYFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G+ + + + ++ GGL MPI+ L L+ + P S F
Sbjct: 303 SALFLCVGA-LYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSF 354
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ LE + + + ++I + +AA ++F+ ++ S FML I + TGT
Sbjct: 95 DLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFISFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 155 TDLQ----ILPTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 211 GILL----KLGTYGF-SRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKII 265
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 266 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 315
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 316 HKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|399059572|ref|ZP_10745188.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Novosphingobium sp. AP12]
gi|398039279|gb|EJL32418.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Novosphingobium sp. AP12]
Length = 510
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 259/356 (72%), Gaps = 1/356 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLF 292
Y LGIDG++L + L+ F+ I I S I+K++ EYM+AFL++ ++G F A D LF
Sbjct: 72 YALGIDGIALLLVMLSVFLMPICIGASRSIEKRVGEYMAAFLLVEVFMLGVFMAQDLYLF 131
Query: 293 YIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILS 352
Y+FFEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LML++M+++ + + S +I +
Sbjct: 132 YMFFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLVAMLWMVHTAGTS-DIPT 190
Query: 353 WHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCY 412
Q WL++ FF +FA+K+P+WP+HTWLP AHV+APT GSVILA ++LK+G Y
Sbjct: 191 LMAYDFDPHVQTWLWLAFFASFAVKMPMWPVHTWLPAAHVQAPTGGSVILAGVLLKMGGY 250
Query: 413 GLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLG 472
G +RFSLP+FP+AS YF+ L+ LS+ +++ SLIA+VQ D+KKLIAYSS+AHM VT+G
Sbjct: 251 GFIRFSLPMFPEASAYFAPLVWGLSMAAVVITSLIALVQSDMKKLIAYSSVAHMAIVTIG 310
Query: 473 IFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFI 532
+F ++G+++ M+SH L++ A+F+ +G +Y+++ TR IS +GG+ +P +++FF+
Sbjct: 311 LFAFNTQGLEGSMLVMLSHGLVAGALFLCVGVIYDRLHTREISRYGGLAINMPRYALFFL 370
Query: 533 IFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+F++A+ LPGTSGF+GEF+ + + + ++ +T +I AAY L L + ++F
Sbjct: 371 LFTMASIGLPGTSGFVGEFLSLGGIYQVSTGTALICTTGIILGAAYMLYLYRRVVF 426
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLP + ++ PT S ++ A ++ G + R S P+F ++ + +++
Sbjct: 215 KMPMWPVHTWLPAAHVQAPTGGSVIL-AGVLLKMGGYGFIRFSLPMFPEASAYFAPLVWG 273
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+D+K++IAYS+++ + +T+GL S+ +++H
Sbjct: 274 LSMAAVVITSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNTQGLEGSMLVMLSHGLVA 333
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ +G P SGF +
Sbjct: 334 GALFLCVG-VIYDRLHTREISRYGGLAINMPRYALFFLLFTMASIGLPGTSGFVGE 388
Score = 48.9 bits (115), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 36/310 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F+LG + M L ++ L+ + L + I + I++S K+F+ +L S M
Sbjct: 117 VFMLG-VFMAQDLYLFYMFFEAGLIPMYLIIGIWGGADRIYAS---YKFFLYTLLGSVLM 172
Query: 647 LYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDV 706
L + + GT ++ ++ + + V L + K+ + P H W+P
Sbjct: 173 LVAMLWMVHTAGTSDIPTLMA----YDFDPHVQTWLWLAFFASFAVKMPMWPVHTWLPAA 228
Query: 707 Y----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNV 762
+ G S+I+ +L K+ + I R + + ++ L++ +++I ++
Sbjct: 229 HVQAPTGGSVILAGVLL---KMGGYGFI-RFSLPMFPEASAYFAPLVWGLSMAAVVITSL 284
Query: 763 SAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
A+ Q + K++IAYSS+AHM GL F+ ++ S ++ LF + I+
Sbjct: 285 IALVQSDMKKLIAYSSVAHMAIVTIGLFAFNTQGLEGSMLVMLSHGLVAGALFLCVGVIY 344
Query: 818 AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
L T E+ + GL P AL ++F + G P T GF +F
Sbjct: 345 DRL---------------HTREISRYGGLAINMPRYALFFLLFTMASIGLPGTSGFVGEF 389
Query: 878 FIFEKIFETQ 887
I++
Sbjct: 390 LSLGGIYQVS 399
>gi|167627165|ref|YP_001677665.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597166|gb|ABZ87164.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 529
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 288/470 (61%), Gaps = 41/470 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCIPLVASFDYSSSAMQFQESAKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYGLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY----- 341
D +L+Y+F+EA LIP + IG WGG N++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKNKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 342 -----YISNKSF---NILSWHQLS--------ITKIEQIWLFITFFIAFAIKIPIWPMHT 385
+S ++ N ++W S T Q +F FF+AFA+KIP+WP H+
Sbjct: 198 SPADVLVSADTYSIQNFIAWAAQSNGLADSVKFTLTAQWLIFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F++FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFAMFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNL 601
MI+L+ +++ I ++ L+ + Y+L + K + F G+++ NL
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF--GEVVSTQVANL 485
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI + L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFAMFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIKTSHNNLIIFN-- 803
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K++ L N
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQ 364
Query: 804 -SCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ +F +I + F+ G F G + L + T E+ F G+ + P A+ ++
Sbjct: 365 LALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAMFFLL 419
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFE 885
F + G P T GF +F I +F+
Sbjct: 420 FCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|386082676|ref|YP_005999255.1| NADH dehydrogenase I subunit M [Rickettsia prowazekii str. Rp22]
gi|292572442|gb|ADE30357.1| NADH dehydrogenase I chain M [Rickettsia prowazekii str. Rp22]
Length = 491
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 268/380 (70%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG++++F+ LT+F+TLI I+ SL IKK + EY+ FL+
Sbjct: 64 YQFVERYTWLDKIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLL 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ L IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 124 MESLCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLL 183
Query: 336 SMIYLYYISNKSFNILSWHQL--SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
++IY+Y SF++ + +L +I Q L+ FIAFAIK P+ P HTWLPDAHV+
Sbjct: 184 ALIYIYS-KIHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQ 242
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+FP+AS F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 243 APTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQKD 302
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IK++IAYSSIAHMG+VT+GIF T+I I GAI QM+SH +ISS++F+ +G LY ++ T+
Sbjct: 303 IKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKE 362
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ N +P + FF+I L++ LP TSGFIGEF+ +L K N + + +I
Sbjct: 363 IAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNVVTAFIAALGII 422
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 423 LGAVYMLKLYKEVM--LGEI 440
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K+ P HTWLPD+ ++ PT S ++ + G + + PLF ++ +I ++++
Sbjct: 226 KTPMIPFHTWLPDAHVQAPTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYL 285
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHAF 161
I + L+ + Q DIK++IAYS+++ +GY+T+G +G+S +IF +++H
Sbjct: 286 SVIAIIYASLVALAQKDIKQMIAYSSIAHMGYVTIGIFSFTEIGISG---AIFQMLSHGI 342
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MPI +I +LS +G P SGF
Sbjct: 343 ISSSLFLIVGTLYERL-HTKEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGF 396
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 37/290 (12%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I N I+ AA+K+F+ S F L + +Y
Sbjct: 136 NLLLFYLFFEAILVPMYIIIGVWGGDNRIY---AALKFFLYTFFGSVFFLLALIYIYSKI 192
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLL--LIIVGLSFKLGISPFHMWVPDVYQGASIIIT 715
+ +L +I +I N + A +L I + + K + PFH W+PD + A
Sbjct: 193 HSFDLTNILELIG----NIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQAP---- 244
Query: 716 LLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQ 767
TT + L I+ +L ++ LLPL N + I L++ ++I ++ A+ Q
Sbjct: 245 ----TTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQ 300
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
+ K+MIAYSSIAHMG + I S + IF G+ I + +F I+G
Sbjct: 301 KDIKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGI--ISSSLFLIVGTL---- 354
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M S G P T GF +F
Sbjct: 355 ----YERLHTKEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEF 400
>gi|15604625|ref|NP_221143.1| NADH dehydrogenase subunit M [Rickettsia prowazekii str. Madrid E]
gi|383486772|ref|YP_005404452.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. GvV257]
gi|383488187|ref|YP_005405866.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. Chernikova]
gi|383489032|ref|YP_005406710.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. Katsinyian]
gi|383489872|ref|YP_005407549.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. Dachau]
gi|383500010|ref|YP_005413371.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. BuV67-CWPP]
gi|383500845|ref|YP_005414205.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. RpGvF24]
gi|6647692|sp|Q9ZCG0.1|NUOM_RICPR RecName: Full=NADH-quinone oxidoreductase subunit M; AltName:
Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1
subunit M
gi|3861320|emb|CAA15219.1| NADH DEHYDROGENASE I CHAIN M (nuoM) [Rickettsia prowazekii str.
Madrid E]
gi|380757137|gb|AFE52374.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. GvV257]
gi|380758542|gb|AFE53778.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. RpGvF24]
gi|380761066|gb|AFE49588.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. Chernikova]
gi|380761911|gb|AFE50432.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. Katsinyian]
gi|380762756|gb|AFE51276.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. BuV67-CWPP]
gi|380763595|gb|AFE52114.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia prowazekii
str. Dachau]
Length = 491
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 268/380 (70%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG++++F+ LT+F+TLI I+ SL IKK + EY+ FL+
Sbjct: 64 YQFVERYTWLDKIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLL 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ L IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 124 MESLCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLL 183
Query: 336 SMIYLYYISNKSFNILSWHQL--SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
++IY+Y SF++ + +L +I Q L+ FIAFAIK P+ P HTWLPDAHV+
Sbjct: 184 ALIYIYS-KIHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQ 242
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+FP+AS F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 243 APTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQKD 302
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IK++IAYSSIAHMG+VT+GIF T+I I GAI QM+SH +ISS++F+ +G LY ++ T+
Sbjct: 303 IKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKE 362
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ N +P + FF+I L++ LP TSGFIGEF+ +L K N + + +I
Sbjct: 363 IAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNVVTAFIAALGII 422
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 423 LGAVYMLKLYKEVM--LGEI 440
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K+ P HTWLPD+ ++ PT S ++ + G + + PLF ++ +I ++++
Sbjct: 226 KTPMIPFHTWLPDAHVQAPTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYL 285
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHAF 161
I + L+ + Q DIK++IAYS+++ +GY+T+G +G+S +IF +++H
Sbjct: 286 SVIAIIYASLVALAQKDIKQMIAYSSIAHMGYVTIGIFSFTEIGISG---AIFQMLSHGI 342
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MPI +I +LS +G P SGF
Sbjct: 343 ISSSLFLIVGTLYERL-HTKEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGF 396
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 37/290 (12%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I N I+ AA+K+F+ S F L + +Y
Sbjct: 136 NLLLFYLFFEAILVPMYIIIGVWGGDNRIY---AALKFFLYTFFGSVFFLLALIYIYSKI 192
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLL--LIIVGLSFKLGISPFHMWVPDVYQGASIIIT 715
+ +L +I +I N + A +L I + + K + PFH W+PD + A
Sbjct: 193 HSFDLTNILELIG----NIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQAP---- 244
Query: 716 LLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQ 767
TT + L I+ +L ++ LLPL N + I L++ ++I ++ A+ Q
Sbjct: 245 ----TTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQ 300
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
+ K+MIAYSSIAHMG + I S + IF G+ I + +F I+G
Sbjct: 301 KDIKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGI--ISSSLFLIVGTL---- 354
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M S G P T GF +F
Sbjct: 355 ----YERLHTKEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEF 400
>gi|296283852|ref|ZP_06861850.1| NADH-quinone oxidoreductase chain M [Citromicrobium bathyomarinum
JL354]
Length = 532
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 253/357 (70%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LGIDG++L I L+ F+ I IL S + K++ EYM+AFLI+ L+IG F A D +L
Sbjct: 72 YALGIDGIALMLIMLSVFLMPICILASWTSVTKRVGEYMAAFLIMELLMIGVFAAQDILL 131
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP+++IIG WGG +R YA+ KFFLYTL+GS++MLI+M+++ + S I
Sbjct: 132 FYIFFEAGLIPMYLIIGIWGGDDRIYASFKFFLYTLLGSVVMLIAMLWMIQEAGTSL-IP 190
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
Q Q WL++ FF +FA+K+P+WP+HTWLP AHV+APT GSVILA ++LKLG
Sbjct: 191 VLLQYDFPPEAQTWLWLAFFASFAVKMPMWPVHTWLPAAHVQAPTAGSVILAGVLLKLGG 250
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS F L+ LS+I+++ SLIA+VQ D+KKLIAYSS+AHM VT
Sbjct: 251 YGFIRFSLPMFPEASAQFVWLVFGLSMIAVVVTSLIALVQHDMKKLIAYSSVAHMAIVTA 310
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F I+GA++ M+SH L+S A+F+ +G +Y+++ TR I+ +GG+ +P +++FF
Sbjct: 311 GLFAFNSQGIEGAMVMMLSHGLVSGALFLCVGVIYDRLHTREIARYGGLATNMPRYALFF 370
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTSGF+ EF+ + + + + +T +I A Y L L + ++F
Sbjct: 371 LLFTMASIGLPGTSGFVAEFISLAGIYQMSSTTTFVLTTGIILGAGYMLYLYRRVVF 427
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P+HTWLP + ++ PT A ++I A ++ G + R S P+F E S + ++
Sbjct: 216 KMPMWPVHTWLPAAHVQAPT-AGSVILAGVLLKLGGYGFIRFSLPMFPEASAQFVWLVFG 274
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I L+ ++Q+D+K++IAYS+++ + +T GL G+ V +++H
Sbjct: 275 LSMIAVVVTSLIALVQHDMKKLIAYSSVAHMAIVTAGLFAFNSQGIEGAMV---MMLSHG 331
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ +G P SGF ++
Sbjct: 332 LVSGALFLCVG-VIYDRLHTREIARYGGLATNMPRYALFFLLFTMASIGLPGTSGFVAE 389
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 138/312 (44%), Gaps = 40/312 (12%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F++ +++MI + ++L Y+ E L+ + L + I + I++S K+F+ +L
Sbjct: 113 FLIMELLMIGVFAAQDILLFYIFFEAGLIPMYLIIGIWGGDDRIYAS---FKFFLYTLLG 169
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT S+ V+ + L + K+ + P H W
Sbjct: 170 SVVMLIAMLWMIQEAGT----SLIPVLLQYDFPPEAQTWLWLAFFASFAVKMPMWPVHTW 225
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV--INWQKILLI--LAIFSLI 758
+P + A +++L+ L + I+ LP+ + Q + L+ L++ +++
Sbjct: 226 LPAAHVQAPTAGSVILAGV----LLKLGGYGFIRFSLPMFPEASAQFVWLVFGLSMIAVV 281
Query: 759 IGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII 813
+ ++ A+ Q++ K++IAYSS+AHM GL F+ I+ + ++ LF +
Sbjct: 282 VTSLIALVQHDMKKLIAYSSVAHMAIVTAGLFAFNSQGIEGAMVMMLSHGLVSGALFLCV 341
Query: 814 TYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
I+ L T E+ + GL P AL ++F + G P T GF
Sbjct: 342 GVIYDRL---------------HTREIARYGGLATNMPRYALFFLLFTMASIGLPGTSGF 386
Query: 874 YAKFFIFEKIFE 885
A+F I++
Sbjct: 387 VAEFISLAGIYQ 398
>gi|299066344|emb|CBJ37528.1| NADH-quinone oxidoreductase subunit L [Ralstonia solanacearum
CMR15]
Length = 686
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 SGSMSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS++L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSVVLVIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFSGFYSKDS 414
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLG 410
WH L++ I FI K +P+H WLPD+ +E PT ++I AA M+ G
Sbjct: 225 DWHMLTVACI-------CLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAG 276
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
+ + R S P+F + S +++ + I+ +++ + ++Q DIK+++AYS+++ +G++T
Sbjct: 277 IFMVARMS-PLFELSDTALS-VVLVIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMT 334
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSV 529
+ L + Q A+ +++HA + +F+ G + + + N GG+ +P +
Sbjct: 335 VA---LGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWL 391
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
++ SLA P SGF + II AV+
Sbjct: 392 TSLVGSLALIGTPFFSGFYSKDSII-EAVR 420
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 139/308 (45%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L +G++ +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYSGSMSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L ++L++ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSVVLVIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFSGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|17546770|ref|NP_520172.1| NADH dehydrogenase subunit L [Ralstonia solanacearum GMI1000]
gi|17429070|emb|CAD15758.1| probable transmembrane nadh dehydrogenaseI(chain l) oxidoreductase
protein [Ralstonia solanacearum GMI1000]
Length = 686
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSLSYADVFAAREKLAVIGFPGTDWQMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS++L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSVVLVIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFSGFYSKDS 414
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S +++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A+
Sbjct: 292 TALS-VVLVIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYQVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFS 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 139/308 (45%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+L +F VI + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYAGSLSYADVFAAREKLAVIGFPGTDWQMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L ++L++ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSVVLVIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFSGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|374092096|gb|AEY83712.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Trichocolea
tomentella]
Length = 437
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 185/395 (46%), Positives = 269/395 (68%), Gaps = 12/395 (3%)
Query: 204 LLSLVGAPFFSGFYSKDKKKI-------WIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
L++ + + FF + D K W+ Y NI +++GIDG+SL+F+ T F+T I I
Sbjct: 3 LITFLYSLFFRIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVISTTFLTPICI 62
Query: 257 LISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L+ ++ EYM AF I I FC LD ++FY+FFE+ LIP+FIIIG WG R
Sbjct: 63 LVGFHSVESYKKEYMIAFFICESFPIAVFCPLDLLIFYVFFESVLIPMFIIIGVWGSRQR 122
Query: 316 S-YAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FNILSWHQLSITKIEQIWLFITFFIA 373
AA +FFLYTLMGSL ML++++++++ + + IL + S + QI L+I FF +
Sbjct: 123 KIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFS--ERRQILLWIAFFAS 180
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
F++K+P+ P+H WLP+AHVEAPT GSVILA I+ KLG YG LRFS+P+FP+A+ Y + I
Sbjct: 181 FSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILSKLGTYGFLRFSIPMFPEATLYSTPSI 240
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHAL 493
LS+I+IIY SL + QID+KK+IAYS +AHM FVT+G+F L I+G+I+ M+SH L
Sbjct: 241 YALSVIAIIYTSLTTIRQIDLKKIIAYSPVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL 300
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+SSA+F+ +G LY++ KTR++ +GG+++ +P FS F+ F+LAN SLPGTS FIGEF+I
Sbjct: 301 VSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLI 360
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++ A + N + L + +I AAYSL L ++F
Sbjct: 361 LVGAFQRNSLVAALAAPGMILGAAYSLWLYNRVVF 395
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A + G + R S P+F E + + I
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILSKLGTYGFLRFSIPMFPEATLYSTPSIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS ++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSPVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MPI
Sbjct: 303 SALFLCVGALYDRHK-TRIVKYYGGLVSTMPI 333
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 22/294 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ ++ + L + S K+ + P H+W+P+ + A S+I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
+LS KL + + R I + + L++ ++I +++ I Q + K++IA
Sbjct: 211 GILS---KLGTYGFL-RFSIPMFPEATLYSTPSIYALSVIAIIYTSLTTIRQIDLKKIIA 266
Query: 776 YSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCN 835
YS +AHM + + S+ I GL + + +F +GA L + +
Sbjct: 267 YSPVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR--H 316
Query: 836 KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 317 KTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|254368977|ref|ZP_04984990.1| hypothetical protein FTAG_00807 [Francisella tularensis subsp.
holarctica FSC022]
gi|157121898|gb|EDO66068.1| hypothetical protein FTAG_00807 [Francisella tularensis subsp.
holarctica FSC022]
Length = 529
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/395 (44%), Positives = 265/395 (67%), Gaps = 36/395 (9%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA D
Sbjct: 80 DIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCATD 139
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-------- 340
+L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L++++Y+
Sbjct: 140 SILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLVAILYIQTRVAASP 199
Query: 341 -YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHTWL 387
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+WL
Sbjct: 200 THFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHSWL 259
Query: 388 PDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLI 447
PDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+ ++
Sbjct: 260 PDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVGVV 319
Query: 448 AMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISHAL 493
A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+HA
Sbjct: 320 AVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAHAF 379
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEFMI
Sbjct: 380 SSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEFMI 439
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 440 LLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 52/292 (17%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTL----------ELQSIFNVIK--------LN 672
AA+KYF+ S F+L ++ILY T + SI N I ++
Sbjct: 169 AAVKYFMYTFFGSVFLL--VAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID 226
Query: 673 NINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSL 726
++ ++ A L+ L+F K+ + PFH W+PD + G S+I+ L+ KL
Sbjct: 227 SVKFTLTAQWLVFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGA 283
Query: 727 FVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM- 785
+ + R I L + + + +L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+
Sbjct: 284 YGFL-RFAIPMLPEVTASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVT 342
Query: 786 --LFSIISIK-------TSHNNLIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNT 833
LFSI +K T+H L + +F +I + F+ G F G + L +
Sbjct: 343 LGLFSIFILKNADPVLGTTHAQL----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-- 396
Query: 834 CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
T E+ F G+ + P A ++F + G P T GF +F I +F+
Sbjct: 397 ---TREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|254876271|ref|ZP_05248981.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|337754559|ref|YP_004647070.1| NADH-ubiquinone oxidoreductase subunit M [Francisella sp. TX077308]
gi|254842292|gb|EET20706.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|336446164|gb|AEI35470.1| NADH-ubiquinone oxidoreductase chain M [Francisella sp. TX077308]
Length = 529
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 288/470 (61%), Gaps = 41/470 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCIPLVASFDYSSSAMQFQESAKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYGLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY----- 341
D +L+Y+F+EA LIP + IG WGG N++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKNKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 342 -----YISNKSF---NILSWHQLS--------ITKIEQIWLFITFFIAFAIKIPIWPMHT 385
+S ++ N ++W S T Q +F FF+AFA+KIP+WP H+
Sbjct: 198 SPADLLVSADTYSIQNFIAWAAQSNGLADSVKFTLTAQWLIFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F++FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFAMFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNL 601
MI+L+ +++ I ++ L+ + Y+L + K + F G+++ NL
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF--GEVVSTQVANL 485
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI + L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFAMFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIKTSHNNLIIFN-- 803
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K++ L N
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQ 364
Query: 804 -SCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ +F +I + F+ G F G + L + T E+ F G+ + P A+ ++
Sbjct: 365 LALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAMFFLL 419
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFE 885
F + G P T GF +F I +F+
Sbjct: 420 FCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|410478497|ref|YP_006766134.1| NADH dehydrogenase (quinone) subunit M [Leptospirillum ferriphilum
ML-04]
gi|424866233|ref|ZP_18290074.1| NADH dehydrogenase (quinone), chain M [Leptospirillum sp. Group II
'C75']
gi|124515804|gb|EAY57313.1| NADH dehydrogenase (quinone), chain M [Leptospirillum rubarum]
gi|387223030|gb|EIJ77402.1| NADH dehydrogenase (quinone), chain M [Leptospirillum sp. Group II
'C75']
gi|406773749|gb|AFS53174.1| NADH dehydrogenase (quinone), chain M [Leptospirillum ferriphilum
ML-04]
Length = 500
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/380 (46%), Positives = 269/380 (70%), Gaps = 1/380 (0%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
+TC+ LI L ++G S + +WI + NI+Y LG+DG+S+ I +T F+ +
Sbjct: 43 LTCVEFLISLDLVLGMNPGSFRMQFTEDHLWIPFANIHYSLGVDGISIVLIIMTTFLLPM 102
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
+L S I ++ E+M LIL G+++G F A D +LFY+F+E+ LIP+++IIG WGG
Sbjct: 103 CVLTSWKGISTRVVEFMMTLLILEGIMVGVFAATDFVLFYVFWESMLIPMYLIIGVWGGP 162
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIA 373
NR YA IKFFLYTL GSLL+L+ +I LY++ +FNI+ + + Q + F+ F+A
Sbjct: 163 NRLYATIKFFLYTLAGSLLLLLVIISLYFVGGHTFNIVQLMGQHYSMLFQEFAFVAMFVA 222
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
FA+K+P++P HTWLPDAHVEAPT GSVILA++MLK+G YG LRFSLP+FP+AS++F+ LI
Sbjct: 223 FAVKVPMFPFHTWLPDAHVEAPTAGSVILASVMLKMGAYGFLRFSLPMFPEASHFFTPLI 282
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHAL 493
LSL I++ +L+A+ Q D+KKLIAYSS++HMG VTLGIF+ ++GA++ MI+H +
Sbjct: 283 FGLSLAGIVWGALMALAQEDMKKLIAYSSVSHMGIVTLGIFVFNYQGLEGALMGMINHGV 342
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+ A+F+ +G LY++ +R +S++GGI V+P FS F+IFS+++ LPG + FIGEF++
Sbjct: 343 TTGALFLCVGVLYDRTHSRQLSDYGGIAKVMPVFSTMFMIFSMSSLGLPGLNSFIGEFLV 402
Query: 554 ILSAVKFNFCIGVLTSTALI 573
+L + + + VL +T +I
Sbjct: 403 LLGTFRQHSALAVLATTVII 422
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 8/187 (4%)
Query: 39 AFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL 96
AF+ + K FP HTWLPD+ +E PT A ++I A+ M+ G + R S P+F
Sbjct: 215 AFVAMFVAFAVKVPMFPFHTWLPDAHVEAPT-AGSVILASVMLKMGAYGFLRFSLPMFPE 273
Query: 97 SNTALSIILFIGAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAY---TVS 152
++ + ++F ++ G L+ + Q D+K++IAYS++S +G +T+G+ V Y +
Sbjct: 274 ASHFFTPLIFGLSLAGIVWGALMALAQEDMKKLIAYSSVSHMGIVTLGIFVFNYQGLEGA 333
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+ ++ H LFL G ++ + H++ + + GG+ K MP+ +I +S +G P
Sbjct: 334 LMGMINHGVTTGALFLCVG-VLYDRTHSRQLSDYGGIAKVMPVFSTMFMIFSMSSLGLPG 392
Query: 213 FSGFYSK 219
+ F +
Sbjct: 393 LNSFIGE 399
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 25/264 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVL--ALSLLLIIV 688
A IK+F+ + S +L I LY + G FN+++L + S+L + + + V
Sbjct: 167 ATIKFFLYTLAGSLLLLLVIISLYFVGG-----HTFNIVQLMGQHYSMLFQEFAFVAMFV 221
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
+ K+ + PFH W+PD + A +++L++ + L + Y L + LP+
Sbjct: 222 AFAVKVPMFPFHTWLPDAHVEAPTAGSVILAS---VMLKMGAYGFL-RFSLPMFPEASHF 277
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ ++ L++ ++ G + A+ Q + K++IAYSS++HMG++ I +
Sbjct: 278 FTPLIFGLSLAGIVWGALMALAQEDMKKLIAYSSVSHMGIVTLGIFVFN--------YQG 329
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ L +I + F + +L + T ++ +L + G+ + P + + MIF S
Sbjct: 330 LEGALMGMINHGVTTGALFLCVGVLYDRTHSR--QLSDYGGIAKVMPVFSTMFMIFSMSS 387
Query: 865 AGFPPTIGFYAKFFIFEKIFETQK 888
G P F +F + F
Sbjct: 388 LGLPGLNSFIGEFLVLLGTFRQHS 411
>gi|94496468|ref|ZP_01303045.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingomonas sp. SKA58]
gi|94424214|gb|EAT09238.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingomonas sp. SKA58]
Length = 517
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/401 (44%), Positives = 275/401 (68%), Gaps = 10/401 (2%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWI--DYFNIY----YFLGIDGLSLWFIPLT 248
I I +L+ L+ +G ++ F W +Y I+ + LGIDG++L I LT
Sbjct: 32 IALIATLVDLV--LGIALWANFDQAGTAAQWQFQEYAPIFGRFAWALGIDGIALMLIVLT 89
Query: 249 AFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIII 307
F+ I I S I+K++ EYM+AFL + L+IG F A D LFY+ FEA LIP+++II
Sbjct: 90 VFLMPICIGASWQAIQKRVGEYMAAFLFMEVLMIGVFTAQDIYLFYVMFEAGLIPMYLII 149
Query: 308 GTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF 367
G WGG++R YA+ KFFLYTL+GS+LMLI+M+++ + + + I + + Q WLF
Sbjct: 150 GIWGGADRIYASYKFFLYTLLGSVLMLIAMMWMVHEAGTT-EIPALMAYNFAPEAQTWLF 208
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G YG +RFSLP+FP+AS
Sbjct: 209 LAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGGYGFIRFSLPMFPEASA 268
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ LI LS+++++Y SL+A+VQ D+KKLIAYSS+AHM VT+G+F + I+GA++
Sbjct: 269 QLAWLIWGLSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTVGLFAFNQAGIEGAMMV 328
Query: 488 MISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
M+ H L+S A+F+ +G +Y+++ TR I+ +GG+ +P ++V F++F++A+ LPGTS F
Sbjct: 329 MLGHGLVSGALFLCVGVIYDRLHTREINRYGGLSINMPKYAVLFLLFTMASVGLPGTSNF 388
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+GEF+ ++ + + + ++ +T +I AAY L L + I +
Sbjct: 389 VGEFLSLMGIYQASSWVALVCTTGIILGAAYMLYLYRRIAY 429
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ +++
Sbjct: 218 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAWLIWG 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +TVGL + ++ ++ H
Sbjct: 277 LSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTVGLFAFNQAGIEGAMMVMLGHGLVS 336
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ VG P S F +
Sbjct: 337 GALFLCVG-VIYDRLHTREINRYGGLSINMPKYAVLFLLFTMASVGLPGTSNFVGE 391
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 129/304 (42%), Gaps = 36/304 (11%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I + I++S K+F+ +L S ML + + GT E+ ++
Sbjct: 142 LIPMYLIIGIWGGADRIYAS---YKFFLYTLLGSVLMLIAMMWMVHEAGTTEIPALMAY- 197
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVI 729
N L + K+ + P H W+PD + A +++L+ L +
Sbjct: 198 ---NFAPEAQTWLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGV----LLKM 250
Query: 730 IYRLLIKCLLPLV--INWQKILLI--LAIFSLIIGNVSAITQYNFKRMIAYSSIAHM--- 782
I+ LP+ + Q LI L++ +++ ++ A+ Q + K++IAYSS+AHM
Sbjct: 251 GGYGFIRFSLPMFPEASAQLAWLIWGLSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIV 310
Query: 783 --GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDEL 840
GL F+ I+ + ++ LF + I+ L T E+
Sbjct: 311 TVGLFAFNQAGIEGAMMVMLGHGLVSGALFLCVGVIYDRL---------------HTREI 355
Query: 841 DIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSL 900
+ + GL P A++ ++F + G P T F +F I++ W+ L+ +
Sbjct: 356 NRYGGLSINMPKYAVLFLLFTMASVGLPGTSNFVGEFLSLMGIYQASS-WVALVCTTGII 414
Query: 901 IGAK 904
+GA
Sbjct: 415 LGAA 418
>gi|319794657|ref|YP_004156297.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Variovorax paradoxus EPS]
gi|315597120|gb|ADU38186.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Variovorax paradoxus EPS]
Length = 674
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNMLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYGEAFAKANTLAGITFPGTEWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSLIG L+L+G P FSGFYSKD
Sbjct: 382 GVRKYMPITWITSLIGSLALIGTPLFSGFYSKDS 415
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 21/201 (10%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLFELSDTALS-FILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ A+ +++HA + +F+ IG +NQ I GG+ +P + +I
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQD----IRWMGGVRKYMPITWITSLI 396
Query: 534 FSLANCSLPGTSGFIGEFMII 554
SLA P SGF + II
Sbjct: 397 GSLALIGTPLFSGFYSKDSII 417
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 137/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GTL F I ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYAGTLNYGEAFAKANTLAGITFPGTEWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFILVIGAITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + +N ++ G+ + P + +I +L G P GFY+K I
Sbjct: 362 LGAGSVIIGMHHN-----QDIRWMGGVRKYMPITWITSLIGSLALIGTPLFSGFYSKDSI 416
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 417 IEAVHESH 424
>gi|239816472|ref|YP_002945382.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Variovorax paradoxus S110]
gi|239803049|gb|ACS20116.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Variovorax paradoxus S110]
Length = 676
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/274 (64%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNMLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYGEAFAKANTLAGITFPGTEWMLVTVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G PFF+GFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPFFAGFYSKDS 415
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 104/201 (51%), Gaps = 21/201 (10%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLVTVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLFELSDTALS-FILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ A+ +++HA + +F+ IG +NQ I GG+ +P + ++
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQD----IRWMGGVRKYMPITWITSLL 396
Query: 534 FSLANCSLPGTSGFIGEFMII 554
SLA P +GF + II
Sbjct: 397 GSLALIGTPFFAGFYSKDSII 417
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GTL F I ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYAGTLNYGEAFAKANTLAGITFPGTEWMLVTVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFILVIGAITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + +N ++ G+ + P + ++ +L G P GFY+K I
Sbjct: 362 LGAGSVIIGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPFFAGFYSKDSI 416
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 417 IEAVHESH 424
>gi|395763167|ref|ZP_10443836.1| NADH dehydrogenase I subunit L [Janthinobacterium lividum PAMC
25724]
Length = 700
Score = 348 bits (892), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
M+NN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR
Sbjct: 142 MANNFLQLFFGWEAVGLVSYLLIGFWYQRPTAIVANMKAFLVNRVGDFGFILGIGLLLAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGSMNYQEVFAKKEELALLSLPGTDWALLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS IL IG+ITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFILVIGSITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 322 VVAYSTLSQLGYMTVALGSSAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 GLRKYMPITWITSLVGSLALIGTPLFSGFYSKDS 415
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 144/311 (46%), Gaps = 23/311 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMANNFLQLFFGWEAVGLVSYLLIGFWYQRPTAIVANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G++ Q +F ++ L + ++L ++ + + +G K P
Sbjct: 192 IL-GIGLLLAYAGSMNYQEVFAKKEELALLSLPGTDWALLTVACICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFILVIGSITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ +S ++ +F+ F + +
Sbjct: 309 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGSSAYSVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K I
Sbjct: 362 LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPLFSGFYSKDSI 416
Query: 880 FEKIFETQKIW 890
E + E IW
Sbjct: 417 IEAV-EATHIW 426
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 100/189 (52%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 235 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 292
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 293 TALS-FILVIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGSSAYSVAVF 348
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + I N GG+ +P + ++ SLA P S
Sbjct: 349 HLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLALIGTPLFS 408
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 409 GFYSKDSII 417
>gi|340786792|ref|YP_004752257.1| NADH-ubiquinone oxidoreductase subunit L [Collimonas fungivorans
Ter331]
gi|340552059|gb|AEK61434.1| NADH-ubiquinone oxidoreductase chain L [Collimonas fungivorans
Ter331]
Length = 697
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLVNRVGDFGFILGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 SGSMNYSEVFAQKGMLAQLTLPGSDWMLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS IL IG+ITA FMG LG+IQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILIIGSITALFMGFLGVIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II + H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGLHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 414
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 104/195 (53%), Gaps = 14/195 (7%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++I S I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 292 TALSFILIIGS-ITALFMGFLGVIQTDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 347
Query: 487 QMISHALISSAMFISIGF----LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLP 542
+++HA + +F+ G L++ R N GG+ +P + ++ SLA P
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGLHHDQDMR---NMGGLRKYMPITWITSLVGSLALIGTP 404
Query: 543 GTSGFIGEFMIILSA 557
SGF + II +A
Sbjct: 405 FFSGFYSKDSIIEAA 419
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 140/305 (45%), Gaps = 28/305 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANMKAFLVNRVGD 187
Query: 644 -GFMLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L +G++ +F + L + +L ++ + + +G K
Sbjct: 188 FGFIL-GIGLLLAYSGSMNYSEVFAQKGMLAQLTLPGSDWMLLTVACICLFIGAMGKSAQ 246
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +LI+ +
Sbjct: 247 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFILIIGSIT 304
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ + Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 305 ALFMGFLGVIQTDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF- 360
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII L ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 361 ---LGAGSVIIGLHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 412
Query: 877 FFIFE 881
I E
Sbjct: 413 DSIIE 417
>gi|89900297|ref|YP_522768.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Rhodoferax ferrireducens T118]
gi|89345034|gb|ABD69237.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Rhodoferax ferrireducens T118]
Length = 671
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 198/274 (72%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNNL QLF GWE VG+ SYLLIGFW++KP A+ AN+KAFL+NR+G
Sbjct: 142 MSNNLLQLFFGWEGVGLMSYLLIGFWFNKPTAVFANMKAFLVNRVGDFGFILGIALIIAF 201
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AMAKSAQFPLH WLPDSMEGP
Sbjct: 202 TGTLNYTEIFAQKAELAKLSFPGTEWMLVTVICICLFVGAMAKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL+ +L IGAITA FMGLLG+IQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNFVLVIGAITALFMGLLGVIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+GAP F+GFYSKD
Sbjct: 382 GLRKYMPITWITSLLGSLALIGAPLFAGFYSKDS 415
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 153/309 (49%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEGVGLMSYLLIGFWFNKPTAVFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF----NVIKLNNINCSVLALSLLLI--IVGLSFKLGISPF 699
+L GI+++ TGTL IF + KL+ + ++++ I VG K P
Sbjct: 192 IL-GIALIIAFTGTLNYTEIFAQKAELAKLSFPGTEWMLVTVICICLFVGAMAKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ +L+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALNF--VLVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGLLGVI-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ GL + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGGLRKYMPITWITSLLGSLALIGAPLFAGFYSKDS 415
Query: 879 IFEKIFETQ 887
I E ++E+
Sbjct: 416 IIEAVYESH 424
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 355 QLSITKIEQIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLK 408
+LS E W+ +T F+ K +P+H WLPD+ +E PT ++I AA M+
Sbjct: 219 KLSFPGTE--WMLVTVICICLFVGAMAKSAQFPLHVWLPDS-MEGPTPISALIHAATMVT 275
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
G + + R S P+F + S N ++ + I+ +++ L+ ++Q DIK+++AYS+++ +G+
Sbjct: 276 AGIFMVARMS-PLF-ELSDTALNFVLVIGAITALFMGLLGVIQNDIKRVVAYSTLSQLGY 333
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHF 527
+T+ L + A+ +++HA + +F+ G + M + I GG+ +P
Sbjct: 334 MTVA---LGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGLRKYMPIT 390
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMII 554
+ ++ SLA P +GF + II
Sbjct: 391 WITSLLGSLALIGAPLFAGFYSKDSII 417
>gi|359401548|ref|ZP_09194516.1| NADH dehydrogenase I subunit M [Novosphingobium pentaromativorans
US6-1]
gi|357597223|gb|EHJ58973.1| NADH dehydrogenase I subunit M [Novosphingobium pentaromativorans
US6-1]
Length = 512
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 256/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LGIDG++L I L+ F+ I I S I K++ EYM+AFL++ L+IG F A D L
Sbjct: 73 YALGIDGIALLLIMLSVFLMPICIGASWKSIDKRVGEYMAAFLLMETLMIGVFAAQDLFL 132
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LMLI+M+++ + + +I
Sbjct: 133 FYIFFEAGLIPMYLIIGVWGGADRIYASYKFFLYTLLGSVLMLIAMLWMANTAGTT-DIP 191
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 192 TLMAYDFDPQVQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 251
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS YF L+ LS+ +++ SLIA+VQ D+KKLIAYSS+AHM VT+
Sbjct: 252 YGFIRFSLPMFPEASAYFGPLVWGLSMAAVVLTSLIALVQHDMKKLIAYSSVAHMAIVTI 311
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F ++G+++ M+SH L+S A+F+ +G +Y+++ TR I +GG+ +P +++FF
Sbjct: 312 GLFAFNVQGLEGSMLIMLSHGLVSGALFLCVGIIYDRLHTREIDRYGGLSINMPRYALFF 371
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTSGF+GEF+ + + + ++ +T +I AAY L L + + F
Sbjct: 372 MLFTMASVGLPGTSGFVGEFLSLAGIYQVSTWTTLICATGIILGAAYMLYLYRRVAF 428
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ +++
Sbjct: 217 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAYFGPLVWG 275
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+D+K++IAYS+++ + +T+GL V S+ +++H
Sbjct: 276 LSMAAVVLTSLIALVQHDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMLIMLSHGLVS 335
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G II + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 336 GALFLCVG-IIYDRLHTREIDRYGGLSINMPRYALFFMLFTMASVGLPGTSGFVGE 390
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 145/330 (43%), Gaps = 41/330 (12%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L + +MI + +L Y+ E L+ + L + + + I++S K+F+ +L
Sbjct: 114 FLLMETLMIGVFAAQDLFLFYIFFEAGLIPMYLIIGVWGGADRIYAS---YKFFLYTLLG 170
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ + + V L + K+ + P H W
Sbjct: 171 SVLMLIAMLWMANTAGTTDIPTLMAY----DFDPQVQTWLWLAFFASFAVKMPMWPVHTW 226
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLI 758
+PD + A +++L+ L + I+ LP+ + ++ L++ +++
Sbjct: 227 LPDAHVQAPTAGSVILAGV----LLKMGGYGFIRFSLPMFPEASAYFGPLVWGLSMAAVV 282
Query: 759 IGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII 813
+ ++ A+ Q++ K++IAYSS+AHM GL F++ ++ S ++ LF +
Sbjct: 283 LTSLIALVQHDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMLIMLSHGLVSGALFLCV 342
Query: 814 TYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
I+ L T E+D + GL P AL M+F + G P T GF
Sbjct: 343 GIIYDRL---------------HTREIDRYGGLSINMPRYALFFMLFTMASVGLPGTSGF 387
Query: 874 YAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
+F I++ W L+ ++GA
Sbjct: 388 VGEFLSLAGIYQVST-WTTLICATGIILGA 416
>gi|315320243|gb|ADU04612.1| NADH dehydrogenase subunit 4 (mitochondrion) [Mesostigma viride]
Length = 487
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/429 (44%), Positives = 283/429 (65%), Gaps = 13/429 (3%)
Query: 166 LFLSAGSIIINMKHNQDIR--NMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKK 223
LF G+I ++ IR +G + +CIT L+ L VG + + +K
Sbjct: 11 LFPIVGAIFLSFIPESKIRWIRLGAFW----FSCITWLVSLFLWVGFQNSTADFQFLQK- 65
Query: 224 IWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIG 282
ID F +F+G+DG+SL+FI LT F+ + +L+S +I Y AFL L+I
Sbjct: 66 --IDIFPFTFFVGVDGISLFFILLTTFLIPVCLLVSWSNIHHYRKAYFIAFLARESLLIS 123
Query: 283 AFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLY 341
FC LD +LFYIFFE+ LIP+F+IIG WG R AA +FF+YTL GS+ ML+ +++L+
Sbjct: 124 VFCLLDLLLFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLFGSVFMLLGILFLH 183
Query: 342 Y-ISNKSFNIL-SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+ I F +L +W I++ Q+ ++ FF +FA+K+P+ P+H WLP+AHVEAPT GS
Sbjct: 184 FEIGTTDFLVLQAWAPTEISEKVQLICWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGS 243
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LA I+LKLG YGLLRFS+ +FP AS YF+ L+ T+S+I+I+Y SL + QID+KK+IA
Sbjct: 244 VLLAGILLKLGTYGLLRFSITLFPMASIYFTPLVYTMSVIAILYTSLTTLRQIDLKKIIA 303
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHM FVT+G+F I+G+I M+SH L+SSA+F+ +G LY + KTRL+ +GG
Sbjct: 304 YSSVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGLVSSALFLCVGVLYERHKTRLLKYYGG 363
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ +P F++FF+IF+LA S PGTS F+GEF+I++ A + N +L S ++ AAYS
Sbjct: 364 SVHTMPLFAIFFLIFTLAGLSFPGTSSFVGEFLILVGAFQNNISTAILASIGMVLGAAYS 423
Query: 580 LCLSKNIIF 588
+ L ++F
Sbjct: 424 IWLYNRVVF 432
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 9/215 (4%)
Query: 8 LFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEG 66
LFL +EI G +L++ W ++ L +L K P+H WLP++ +E
Sbjct: 180 LFLHFEI-GTTDFLVLQAWAPTEISEKVQLICWLAFFASFAVKVPMVPVHIWLPEAHVEA 238
Query: 67 PTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIGAITA-FFMGLLGIIQND 124
PT S L+ A ++ G + + R S LF +++ + +++ ++ A + L + Q D
Sbjct: 239 PTAGSVLL-AGILLKLGTYGLLRFSITLFPMASIYFTPLVYTMSVIAILYTSLTTLRQID 297
Query: 125 IKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQ 181
+K+IIAYS+++ + ++T+GL V SIF +++H + LFL G ++ +
Sbjct: 298 LKKIIAYSSVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGLVSSALFLCVG-VLYERHKTR 356
Query: 182 DIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
++ GG MP+ I LI L+ + P S F
Sbjct: 357 LLKYYGGSVHTMPLFAIFFLIFTLAGLSFPGTSSF 391
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 15/288 (5%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + AA ++FI + S FML GI L+ GT
Sbjct: 129 DLLLFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLFGSVFMLLGILFLHFEIGT 188
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+ + I+ V + L + K+ + P H+W+P+ + A ++LL+
Sbjct: 189 TDFL-VLQAWAPTEISEKVQLICWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVLLA 247
Query: 720 -TTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYS 777
KL + ++ R I L P+ I + ++ +++ +++ +++ + Q + K++IAYS
Sbjct: 248 GILLKLGTYGLL-RFSIT-LFPMASIYFTPLVYTMSVIAILYTSLTTLRQIDLKKIIAYS 305
Query: 778 SIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKT 837
S+AHM + + S IF GL + + +F +G +L + +KT
Sbjct: 306 SVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGL--VSSALFLCVG-----VLYER---HKT 355
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
L + G P A+ +IF + FP T F +F I F+
Sbjct: 356 RLLKYYGGSVHTMPLFAIFFLIFTLAGLSFPGTSSFVGEFLILVGAFQ 403
>gi|334142116|ref|YP_004535323.1| NADH dehydrogenase I subunit M [Novosphingobium sp. PP1Y]
gi|333940147|emb|CCA93505.1| NADH dehydrogenase I subunit M [Novosphingobium sp. PP1Y]
Length = 511
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 256/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LGIDG++L I L+ F+ I I S I K++ EYM+AFL++ L+IG F A D L
Sbjct: 72 YALGIDGIALLLIMLSVFLMPICIGASWKSIDKRVGEYMAAFLLMETLMIGVFAAQDLFL 131
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LMLI+M+++ + + +I
Sbjct: 132 FYIFFEAGLIPMYLIIGVWGGADRIYASYKFFLYTLLGSVLMLIAMLWMANTAGTT-DIP 190
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 191 TLMAYDFDPQVQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 250
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS YF L+ LS+ +++ SLIA+VQ D+KKLIAYSS+AHM VT+
Sbjct: 251 YGFIRFSLPMFPEASAYFGPLVWGLSMAAVVLTSLIALVQHDMKKLIAYSSVAHMAIVTI 310
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F ++G+++ M+SH L+S A+F+ +G +Y+++ TR I +GG+ +P +++FF
Sbjct: 311 GLFAFNVQGLEGSMLIMLSHGLVSGALFLCVGIIYDRLHTREIDRYGGLSINMPRYALFF 370
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTSGF+GEF+ + + + ++ +T +I AAY L L + + F
Sbjct: 371 MLFTMASVGLPGTSGFVGEFLSLAGIYQVSTWTTLICATGIILGAAYMLYLYRRVAF 427
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ +++
Sbjct: 216 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAYFGPLVWG 274
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+D+K++IAYS+++ + +T+GL V S+ +++H
Sbjct: 275 LSMAAVVLTSLIALVQHDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMLIMLSHGLVS 334
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G II + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 335 GALFLCVG-IIYDRLHTREIDRYGGLSINMPRYALFFMLFTMASVGLPGTSGFVGE 389
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 145/330 (43%), Gaps = 41/330 (12%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L + +MI + +L Y+ E L+ + L + + + I++S K+F+ +L
Sbjct: 113 FLLMETLMIGVFAAQDLFLFYIFFEAGLIPMYLIIGVWGGADRIYAS---YKFFLYTLLG 169
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ + + V L + K+ + P H W
Sbjct: 170 SVLMLIAMLWMANTAGTTDIPTLMAY----DFDPQVQTWLWLAFFASFAVKMPMWPVHTW 225
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLI 758
+PD + A +++L+ L + I+ LP+ + ++ L++ +++
Sbjct: 226 LPDAHVQAPTAGSVILAGV----LLKMGGYGFIRFSLPMFPEASAYFGPLVWGLSMAAVV 281
Query: 759 IGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII 813
+ ++ A+ Q++ K++IAYSS+AHM GL F++ ++ S ++ LF +
Sbjct: 282 LTSLIALVQHDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMLIMLSHGLVSGALFLCV 341
Query: 814 TYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
I+ L T E+D + GL P AL M+F + G P T GF
Sbjct: 342 GIIYDRL---------------HTREIDRYGGLSINMPRYALFFMLFTMASVGLPGTSGF 386
Query: 874 YAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
+F I++ W L+ ++GA
Sbjct: 387 VGEFLSLAGIYQVST-WTTLICATGIILGA 415
>gi|229587155|ref|YP_002845656.1| NADH dehydrogenase subunit M [Rickettsia africae ESF-5]
gi|228022205|gb|ACP53913.1| NADH dehydrogenase I chain M [Rickettsia africae ESF-5]
Length = 493
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSIIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSIIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L+I ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSIIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|134301258|ref|YP_001121226.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134049035|gb|ABO46106.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 529
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 284/457 (62%), Gaps = 39/457 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYSSSAMQFQESVKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL------ 340
D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCVGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 341 ---YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHT 385
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+
Sbjct: 198 SPTHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
MI+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|89257078|ref|YP_514440.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
holarctica LVS]
gi|115315435|ref|YP_764158.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
holarctica OSU18]
gi|156503292|ref|YP_001429357.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254368314|ref|ZP_04984332.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
holarctica 257]
gi|290953001|ref|ZP_06557622.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
holarctica URFT1]
gi|422939333|ref|YP_007012480.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
holarctica FSC200]
gi|423051462|ref|YP_007009896.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
holarctica F92]
gi|89144909|emb|CAJ80257.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
holarctica LVS]
gi|115130334|gb|ABI83521.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
holarctica OSU18]
gi|134254122|gb|EBA53216.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
holarctica 257]
gi|156253895|gb|ABU62401.1| NADH-quinone oxidoreductase, subunit M [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407294484|gb|AFT93390.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
holarctica FSC200]
gi|421952184|gb|AFX71433.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
holarctica F92]
Length = 529
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/395 (44%), Positives = 265/395 (67%), Gaps = 36/395 (9%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
+IYY LG+DG S+ FI LT+F TL+I+L + + IK K+ +YM+ FLI GL G FCA D
Sbjct: 80 DIYYSLGVDGFSVLFIVLTSFATLVIVLAAWISIKTKVRQYMAIFLITCGLTNGVFCATD 139
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-------- 340
+L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 140 SILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAASP 199
Query: 341 -YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHTWL 387
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+WL
Sbjct: 200 THFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHSWL 259
Query: 388 PDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLI 447
PDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+ ++
Sbjct: 260 PDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVGVV 319
Query: 448 AMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISHAL 493
A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+HA
Sbjct: 320 AVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAHAF 379
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEFMI
Sbjct: 380 SSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEFMI 439
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 440 LLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|387825318|ref|YP_005824789.1| NADH-ubiquinone oxidoreductase subunit M [Francisella cf. novicida
3523]
gi|332184784|gb|AEE27038.1| NADH-ubiquinone oxidoreductase chain M [Francisella cf. novicida
3523]
Length = 529
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/458 (40%), Positives = 289/458 (63%), Gaps = 41/458 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKI-WIDYF 229
G ++ +++ + + +C+T L + LV A +S + ++ + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLT-LALCVPLVTAFDYSSSAMQFQESVKWFKVF 76
Query: 230 ---NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFC 285
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FC
Sbjct: 77 GMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFC 136
Query: 286 ALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL----- 340
A D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 137 ATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVA 196
Query: 341 ----YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMH 384
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H
Sbjct: 197 ASPAHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFH 256
Query: 385 TWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYI 444
+WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 257 SWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYV 316
Query: 445 SLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMIS 490
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+
Sbjct: 317 GVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIA 376
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
HA S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GE
Sbjct: 377 HAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGE 436
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
FMI+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 437 FMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|187923351|ref|YP_001894993.1| NADH dehydrogenase subunit L [Burkholderia phytofirmans PsJN]
gi|187714545|gb|ACD15769.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia phytofirmans PsJN]
Length = 695
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ +P AI AN+KAF++NRIG
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRPTAIYANMKAFIVNRIGDFGFLLGIGLLFAF 195
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS ++ IGAITA FMG LGIIQNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFVMVIGAITALFMGFLGIIQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FVMVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + I N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 134/303 (44%), Gaps = 20/303 (6%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFTRPTAIYANMKAFIVNRIGDFGF 185
Query: 647 LYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI +L+ G++ +F + + +L ++ + + +G K P H
Sbjct: 186 LLGIGLLFAFAGSMNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLH 245
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L ++++ + +
Sbjct: 246 VWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFVMVIGAITALFM 303
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + + L
Sbjct: 304 GFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF----L 356
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA VII + ++ ++ GL + P + ++ +L G P GFY+K I
Sbjct: 357 GAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSKDSII 411
Query: 881 EKI 883
+ +
Sbjct: 412 DAV 414
>gi|254373570|ref|ZP_04989056.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571294|gb|EDN36948.1| conserved hypothetical protein [Francisella novicida GA99-3549]
Length = 529
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 285/457 (62%), Gaps = 39/457 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYSSSAMQFQESVKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL------ 340
D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 341 ---YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHT 385
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+
Sbjct: 198 SPTHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S+ MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSAGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
MI+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF A +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSAGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSAGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|385793640|ref|YP_005826616.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678965|gb|AEE88094.1| NADH-ubiquinone oxidoreductase chain M [Francisella cf. novicida
Fx1]
Length = 529
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 285/457 (62%), Gaps = 39/457 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYSSSAMQFQESVKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL------ 340
D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 341 ---YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHT 385
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+
Sbjct: 198 SPTHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ ++P F+ FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKIMPIFATFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
MI+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKIMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKIMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|294011321|ref|YP_003544781.1| NADH dehydrogenase I chain M [Sphingobium japonicum UT26S]
gi|292674651|dbj|BAI96169.1| NADH dehydrogenase I chain M [Sphingobium japonicum UT26S]
Length = 523
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 260/357 (72%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I LT F+ I I S + I+K++ EYM+AFL + L+IG F A D L
Sbjct: 74 WALGIDGIALLLIALTVFLMPICIGASWIAIEKRVPEYMAAFLFMEVLMIGVFTAQDLYL 133
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYI FEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LMLI+M+++ + + + +I
Sbjct: 134 FYIMFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLIAMMWMVHEAGTT-DIP 192
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 193 TLMAYNFDPHIQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 252
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS + L+ LS+++++Y SL+A+VQ D+KKLIAYSS+AHM VT+
Sbjct: 253 YGFIRFSLPMFPEASAQLAPLVWGLSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTI 312
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F + ++GA++ M+ H L+S A+F+ +G +Y+++ TR IS +GG+ +P ++V F
Sbjct: 313 GLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREISRYGGLSINMPKYAVLF 372
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ ++ + + + ++ +T +I AAY L L + I +
Sbjct: 373 MLFTMASVGLPGTSNFVGEFLSLMGIYQASSWVALVATTGIILGAAYMLYLYRRICY 429
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ +++
Sbjct: 218 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPLVWG 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +T+GL + ++ ++ H
Sbjct: 277 LSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVS 336
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + ++ ++ VG P S F +
Sbjct: 337 GALFLCVG-VIYDRLHTREISRYGGLSINMPKYAVLFMLFTMASVGLPGTSNFVGE 391
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 138/327 (42%), Gaps = 35/327 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+ +++MI + +L Y+ E L+ + L + I + I++S K+F+ +L
Sbjct: 115 FLFMEVLMIGVFTAQDLYLFYIMFEAGLIPMYLIIGIWGGADRIYAS---YKFFLYTLLG 171
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ N + + L + K+ + P H W
Sbjct: 172 SVLMLIAMMWMVHEAGTTDIPTLMAY----NFDPHIQTWLWLAFFASFAVKMPMWPVHTW 227
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+PD + Q + +L K+ + I R + ++ L++ +++ +
Sbjct: 228 LPDAHVQAPTAGSVILAGVLLKMGGYGFI-RFSLPMFPEASAQLAPLVWGLSMVAVVYTS 286
Query: 762 VSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ LF + I
Sbjct: 287 LVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVI 346
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+ + GL P A++ M+F + G P T F +
Sbjct: 347 YDRL---------------HTREISRYGGLSINMPKYAVLFMLFTMASVGLPGTSNFVGE 391
Query: 877 FFIFEKIFETQKIWLLLLIIMCSLIGA 903
F I++ W+ L+ ++GA
Sbjct: 392 FLSLMGIYQASS-WVALVATTGIILGA 417
>gi|398812108|ref|ZP_10570884.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Variovorax sp. CF313]
gi|398078874|gb|EJL69756.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Variovorax sp. CF313]
Length = 676
Score = 347 bits (890), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW+++P AI AN+KAFL+NR
Sbjct: 142 MSNNMLQLFFGWEAVGLVSYLLIGFWFNRPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYGEAFAKANTLAGITFPGTEWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G PFF+GFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPFFAGFYSKDS 415
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 21/201 (10%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLFELSDTALS-FILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ A+ +++HA + +F+ IG +NQ I GG+ +P + ++
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQD----IRWMGGVRKYMPITWITSLL 396
Query: 534 FSLANCSLPGTSGFIGEFMII 554
SLA P +GF + II
Sbjct: 397 GSLALIGTPFFAGFYSKDSII 417
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNRPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GTL F I ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYAGTLNYGEAFAKANTLAGITFPGTEWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFILVIGAITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + +N ++ G+ + P + ++ +L G P GFY+K I
Sbjct: 362 LGAGSVIIGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPFFAGFYSKDSI 416
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 417 IEAVHESH 424
>gi|326387449|ref|ZP_08209058.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Novosphingobium nitrogenifigens DSM 19370]
gi|326208105|gb|EGD58913.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Novosphingobium nitrogenifigens DSM 19370]
Length = 516
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 257/355 (72%), Gaps = 2/355 (0%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
LGIDG++L I LT F+ I I S + I+K+ EY +AFL+ L++G F A D LFY
Sbjct: 74 LGIDGIALLLIVLTVFLMPICIGASWNSIEKRAGEYYAAFLLTETLLLGVFVAQDLFLFY 133
Query: 294 IFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW 353
I FEA LIP+++IIG WGG+ R YA+ KFFLYTL+GS+LMLI+M ++ + + +I +
Sbjct: 134 IMFEAGLIPMYLIIGIWGGAERIYASYKFFLYTLLGSVLMLIAMFWMVNEAGTT-DIPTL 192
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
+ Q WLF+ FF +FA+K+P+WP HTWLPDAHV+APT GSVILA ++LK+G YG
Sbjct: 193 MAYNFPPAAQTWLFLAFFASFAVKMPMWPFHTWLPDAHVQAPTGGSVILAGVLLKMGGYG 252
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
+RFSLP+FP AS +F+ LI LS+ +++ SLIA+VQ D+KKLIAYSS+AHM VT+G+
Sbjct: 253 FIRFSLPMFPVASAHFAPLIWGLSMAAVVITSLIALVQNDMKKLIAYSSVAHMAIVTVGL 312
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
F + ++G++I M+SH ++S A+F+ +G +Y+++ TR I+ +GG+ +P++++FF++
Sbjct: 313 FAFNRQGLEGSMIVMLSHGIVSGALFLGVGVIYDRLHTREITRYGGLAVNMPYYALFFML 372
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++A+ LPGTSGF+GEF+ +L + + + ++ +T +I AAY L L + +IF
Sbjct: 373 FTMASIGLPGTSGFVGEFLSLLGVYQESSWVALIATTGIILGAAYMLYLYRRVIF 427
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P HTWLPD+ ++ PT S +I A ++ G + R S P+F +++ + +++
Sbjct: 216 KMPMWPFHTWLPDAHVQAPTGGS-VILAGVLLKMGGYGFIRFSLPMFPVASAHFAPLIWG 274
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++QND+K++IAYS+++ + +TVGL S+ +++H
Sbjct: 275 LSMAAVVITSLIALVQNDMKKLIAYSSVAHMAIVTVGLFAFNRQGLEGSMIVMLSHGIVS 334
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + ++ ++ +G P SGF +
Sbjct: 335 GALFLGVG-VIYDRLHTREITRYGGLAVNMPYYALFFMLFTMASIGLPGTSGFVGE 389
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 153/363 (42%), Gaps = 41/363 (11%)
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLE-- 609
+I+L+ CIG ++ + Y +LG + +L Y+ E
Sbjct: 83 LIVLTVFLMPICIGASWNSIEKRAGEYYAAFLLTETLLLGVFV---AQDLFLFYIMFEAG 139
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I I++S K+F+ +L S ML + + GT ++ ++
Sbjct: 140 LIPMYLIIGIWGGAERIYAS---YKFFLYTLLGSVLMLIAMFWMVNEAGTTDIPTLMA-- 194
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY----QGASIIITLLLSTTPKLS 725
N + L + K+ + PFH W+PD + G S+I+ +L K+
Sbjct: 195 --YNFPPAAQTWLFLAFFASFAVKMPMWPFHTWLPDAHVQAPTGGSVILAGVLL---KMG 249
Query: 726 LFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM--- 782
+ I R + ++ ++ L++ +++I ++ A+ Q + K++IAYSS+AHM
Sbjct: 250 GYGFI-RFSLPMFPVASAHFAPLIWGLSMAAVVITSLIALVQNDMKKLIAYSSVAHMAIV 308
Query: 783 --GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDEL 840
GL F+ ++ S ++ LF + I+ L T E+
Sbjct: 309 TVGLFAFNRQGLEGSMIVMLSHGIVSGALFLGVGVIYDRL---------------HTREI 353
Query: 841 DIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSL 900
+ GL P+ AL M+F + G P T GF +F +++ + W+ L+ +
Sbjct: 354 TRYGGLAVNMPYYALFFMLFTMASIGLPGTSGFVGEFLSLLGVYQ-ESSWVALIATTGII 412
Query: 901 IGA 903
+GA
Sbjct: 413 LGA 415
>gi|390167276|ref|ZP_10219271.1| NADH dehydrogenase I chain M [Sphingobium indicum B90A]
gi|389590125|gb|EIM68128.1| NADH dehydrogenase I chain M [Sphingobium indicum B90A]
Length = 523
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 260/357 (72%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I LT F+ I I S + I+K++ EYM+AFL + L+IG F A D L
Sbjct: 74 WALGIDGIALLLIALTVFLMPICIGASWIAIEKRVPEYMAAFLFMEVLMIGVFTAQDLYL 133
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYI FEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LMLI+M+++ + + + +I
Sbjct: 134 FYIMFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLIAMMWMVHEAGTT-DIP 192
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 193 TLMAYNFDPHIQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 252
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS + L+ LS+++++Y SL+A+VQ D+KKLIAYSS+AHM VT+
Sbjct: 253 YGFIRFSLPMFPEASAQLAPLVWGLSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTI 312
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F + ++GA++ M+ H L+S A+F+ +G +Y+++ TR IS +GG+ +P ++V F
Sbjct: 313 GLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREISRYGGLSINMPKYAVLF 372
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ ++ + + + ++ +T +I AAY L L + I +
Sbjct: 373 MLFTMASVGLPGTSNFVGEFLSLMGIYQASSWVALVATTGIILGAAYMLYLYRRICY 429
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ +++
Sbjct: 218 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPLVWG 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +T+GL + ++ ++ H
Sbjct: 277 LSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVS 336
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + ++ ++ VG P S F +
Sbjct: 337 GALFLCVG-VIYDRLHTREISRYGGLSINMPKYAVLFMLFTMASVGLPGTSNFVGE 391
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 138/327 (42%), Gaps = 35/327 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+ +++MI + +L Y+ E L+ + L + I + I++S K+F+ +L
Sbjct: 115 FLFMEVLMIGVFTAQDLYLFYIMFEAGLIPMYLIIGIWGGADRIYAS---YKFFLYTLLG 171
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ N + + L + K+ + P H W
Sbjct: 172 SVLMLIAMMWMVHEAGTTDIPTLMAY----NFDPHIQTWLWLAFFASFAVKMPMWPVHTW 227
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+PD + Q + +L K+ + I R + ++ L++ +++ +
Sbjct: 228 LPDAHVQAPTAGSVILAGVLLKMGGYGFI-RFSLPMFPEASAQLAPLVWGLSMVAVVYTS 286
Query: 762 VSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ LF + I
Sbjct: 287 LVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVI 346
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+ + GL P A++ M+F + G P T F +
Sbjct: 347 YDRL---------------HTREISRYGGLSINMPKYAVLFMLFTMASVGLPGTSNFVGE 391
Query: 877 FFIFEKIFETQKIWLLLLIIMCSLIGA 903
F I++ W+ L+ ++GA
Sbjct: 392 FLSLMGIYQASS-WVALVATTGIILGA 417
>gi|383484523|ref|YP_005393436.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia parkeri str.
Portsmouth]
gi|378936877|gb|AFC75377.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia parkeri str.
Portsmouth]
Length = 493
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+ LI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLNLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P +VFF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAVFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ + +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAVFFMIAMLGSVGLPGTSGF 398
Score = 77.8 bits (190), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 132/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A+ MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAVFFMIAMLGSVGLPGTSGFIGEF 402
>gi|300691036|ref|YP_003752031.1| NADH-quinone oxidoreductase subunit L [Ralstonia solanacearum
PSI07]
gi|299078096|emb|CBJ50739.1| NADH-quinone oxidoreductase subunit L [Ralstonia solanacearum
PSI07]
gi|344169647|emb|CCA82006.1| NADH-quinone oxidoreductase subunit L [blood disease bacterium
R229]
Length = 686
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS++L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSVVLVIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDS 414
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S +++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A+
Sbjct: 292 TALS-VVLVIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYQVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P +
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFA 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYAGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L ++L++ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSVVLVIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|157964941|ref|YP_001499765.1| NADH dehydrogenase subunit M [Rickettsia massiliae MTU5]
gi|157844717|gb|ABV85218.1| NADH dehydrogenase I chain M [Rickettsia massiliae MTU5]
Length = 493
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 185/380 (48%), Positives = 264/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFIERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+++ +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVVSKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVVSKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVVSKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|56707223|ref|YP_169119.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669693|ref|YP_666250.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis FSC198]
gi|118498229|ref|YP_899279.1| NADH dehydrogenase I subunit M [Francisella novicida U112]
gi|194324413|ref|ZP_03058186.1| proton-translocating NADH-quinone oxidoreductase, chain m family
[Francisella novicida FTE]
gi|254371439|ref|ZP_04987440.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
FSC033]
gi|254874061|ref|ZP_05246771.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379716424|ref|YP_005304760.1| NADH-ubiquinone oxidoreductase subunit M [Francisella tularensis
subsp. tularensis TIGB03]
gi|379725107|ref|YP_005317293.1| NADH-ubiquinone oxidoreductase subunit M [Francisella tularensis
subsp. tularensis TI0902]
gi|385793796|ref|YP_005830202.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis NE061598]
gi|421750975|ref|ZP_16188034.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis AS_713]
gi|421752831|ref|ZP_16189842.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 831]
gi|421754650|ref|ZP_16191617.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 80700075]
gi|421756563|ref|ZP_16193467.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 80700103]
gi|421758428|ref|ZP_16195275.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 70102010]
gi|424673666|ref|ZP_18110600.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 70001275]
gi|56603715|emb|CAG44676.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320026|emb|CAL08059.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|118424135|gb|ABK90525.1| NADH dehydrogenase I, M subunit [Francisella novicida U112]
gi|151569678|gb|EDN35332.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
FSC033]
gi|194321478|gb|EDX18963.1| proton-translocating NADH-quinone oxidoreductase, chain m family
[Francisella tularensis subsp. novicida FTE]
gi|254840060|gb|EET18496.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158331|gb|ADA77722.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
tularensis NE061598]
gi|377826556|gb|AFB79804.1| NADH-ubiquinone oxidoreductase chain M [Francisella tularensis
subsp. tularensis TI0902]
gi|377828101|gb|AFB78180.1| NADH-ubiquinone oxidoreductase chain M [Francisella tularensis
subsp. tularensis TIGB03]
gi|409089193|gb|EKM89245.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 831]
gi|409089286|gb|EKM89337.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis AS_713]
gi|409090692|gb|EKM90704.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 80700075]
gi|409092326|gb|EKM92302.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 70102010]
gi|409093432|gb|EKM93377.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 80700103]
gi|417435661|gb|EKT90540.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
tularensis 70001275]
Length = 529
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 284/457 (62%), Gaps = 39/457 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYSSSAMQFQESVKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL------ 340
D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 341 ---YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHT 385
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+
Sbjct: 198 SPTHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
MI+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|379713380|ref|YP_005301718.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia massiliae str.
AZT80]
gi|376334026|gb|AFB31258.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia massiliae str.
AZT80]
Length = 493
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 185/380 (48%), Positives = 264/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFIERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+++ +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVVSKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVVSKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVVSKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|407938242|ref|YP_006853883.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Acidovorax sp. KKS102]
gi|407896036|gb|AFU45245.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Acidovorax sp. KKS102]
Length = 677
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTLNYGEIFAKAGDLGALSFPGTSWMLVTVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLVTVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLA 400
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIG 565
P SGF + II AV F+ G
Sbjct: 401 LIGTPLFSGFYSKDSII-EAVHFSHLPG 427
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 146/305 (47%), Gaps = 24/305 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF + + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYTGTLNYGEIFAKAGDLGALSFPGTSWMLVTVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDTALNF--ILVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Query: 879 IFEKI 883
I E +
Sbjct: 416 IIEAV 420
>gi|341584380|ref|YP_004764871.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia
heilongjiangensis 054]
gi|340808605|gb|AEK75193.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia
heilongjiangensis 054]
Length = 493
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/380 (48%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL IKK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHIGVDGISIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++I+IG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIMIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYLFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIMIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L +F + +NI + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLTYLFQLT--DNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|208780256|ref|ZP_03247598.1| proton-translocating NADH-quinone oxidoreductase, chain m family
[Francisella novicida FTG]
gi|208743905|gb|EDZ90207.1| proton-translocating NADH-quinone oxidoreductase, chain m family
[Francisella novicida FTG]
Length = 529
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 284/457 (62%), Gaps = 39/457 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYSSSAMQFQESVKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL------ 340
D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 341 ---YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHT 385
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+
Sbjct: 198 SPTHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
MI+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|15893150|ref|NP_360864.1| NADH dehydrogenase subunit M [Rickettsia conorii str. Malish 7]
gi|20139031|sp|Q92G96.1|NUOM_RICCN RecName: Full=NADH-quinone oxidoreductase subunit M; AltName:
Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1
subunit M
gi|15620359|gb|AAL03765.1| NADH dehydrogenase I chain M [Rickettsia conorii str. Malish 7]
Length = 493
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S+ F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISILFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 77.0 bits (188), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|344171803|emb|CCA84425.1| NADH-quinone oxidoreductase subunit L [Ralstonia syzygii R24]
Length = 686
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS++L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSVVLVIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDS 414
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S +++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A+
Sbjct: 292 TALS-VVLVIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYQVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P +
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFA 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYAGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L ++L++ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSVVLVIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|260223133|emb|CBA33392.1| NADH-quinone oxidoreductase subunit L [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 647
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 198/274 (72%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 117 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIGAY 176
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 177 TGSLNYSEVFAKSADLSALVFPGTDWMLVTVICICLFIGAMGKSAQFPLHLWLPDSMEGP 236
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ IL IG+ITA FMG LGIIQNDIKR
Sbjct: 237 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFILVIGSITALFMGFLGIIQNDIKR 296
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY+V++FHLMTHAFFKALLFL AGS+I+ + HNQDIR MG
Sbjct: 297 VVAYSTLSQLGYMTVALGVSAYSVAVFHLMTHAFFKALLFLGAGSVIMGVHHNQDIRWMG 356
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMP+T ITSL+G L+L+G PFFSGFYSKD
Sbjct: 357 GLRKYMPVTWITSLLGSLALIGTPFFSGFYSKDS 390
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 106/197 (53%), Gaps = 13/197 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 202 WMLVTVICICLFIGAMGKSAQFPLHLWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 260
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ + ++
Sbjct: 261 -PLF-ELSDTALNFILVIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVAL-GVSA 317
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
S+ A+ +++HA + +F+ G + + I GG+ +P + ++ SLA
Sbjct: 318 YSV--AVFHLMTHAFFKALLFLGAGSVIMGVHHNQDIRWMGGLRKYMPVTWITSLLGSLA 375
Query: 538 NCSLPGTSGFIGEFMII 554
P SGF + II
Sbjct: 376 LIGTPFFSGFYSKDSII 392
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 148/309 (47%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 107 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 166
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TG+L +F + + + ++ + + + +G K P
Sbjct: 167 IL-GIGLIGAYTGSLNYSEVFAKSADLSALVFPGTDWMLVTVICICLFIGAMGKSAQFPL 225
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I +I +L
Sbjct: 226 HLWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDTALNF--ILVIGSITALF 283
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 284 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGVSAYSVAVFHLMTHAFFKALLF--- 336
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ GL + P + ++ +L G P GFY+K
Sbjct: 337 -LGAGSVIMGVHHN-----QDIRWMGGLRKYMPVTWITSLLGSLALIGTPFFSGFYSKDS 390
Query: 879 IFEKIFETQ 887
I E + +
Sbjct: 391 IIEAVHASH 399
>gi|254375037|ref|ZP_04990517.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151572755|gb|EDN38409.1| conserved hypothetical protein [Francisella novicida GA99-3548]
Length = 529
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 284/457 (62%), Gaps = 39/457 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYSSSAMQFQESVKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL------ 340
D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 341 ---YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHT 385
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+
Sbjct: 198 SPTHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
MI+L+ +++ I ++ L+ + Y+L + K + F
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILLAVFQ 445
>gi|427411300|ref|ZP_18901502.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingobium yanoikuyae ATCC 51230]
gi|425710485|gb|EKU73507.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingobium yanoikuyae ATCC 51230]
Length = 517
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/357 (47%), Positives = 256/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I LT F+ I I S + I K++ EYM+AFL + L+IG F A D L
Sbjct: 74 WALGIDGIALLLIALTVFLMPICIGASWNAINKRVGEYMAAFLFMEVLMIGVFTAQDLYL 133
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYI FEA LIP+++IIG WGG+NR YA+ KFFLYTL+GS+LMLI+M+++ + + + I
Sbjct: 134 FYIMFEAGLIPMYLIIGIWGGANRIYASYKFFLYTLLGSVLMLIAMMWMVHEAGTT-RIP 192
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ QIWLF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 193 DLMAYNFDPKIQIWLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 252
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS + + LS+++++Y SLIA+VQ D+KKLIAYSS+AHM VT+
Sbjct: 253 YGFIRFSLPMFPEASAQLAPWVWGLSMVAVVYTSLIALVQSDMKKLIAYSSVAHMAIVTI 312
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F + ++GA++ M+ H L+S A+F+ +G +Y+++ TR I+ +GG+ +P ++V F
Sbjct: 313 GLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREINRYGGLAINMPRYAVLF 372
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ ++ + + ++ +T +I AAY L L + I +
Sbjct: 373 LLFTMASVGLPGTSNFVGEFLSLMGIYQVSTWAALICTTGIILGAAYMLYLYRRICY 429
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ ++
Sbjct: 218 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPWVWG 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +T+GL + ++ ++ H
Sbjct: 277 LSMVAVVYTSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVS 336
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ VG P S F +
Sbjct: 337 GALFLCVG-VIYDRLHTREINRYGGLAINMPRYAVLFLLFTMASVGLPGTSNFVGE 391
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 138/331 (41%), Gaps = 41/331 (12%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 115 FLFMEVLMIGVFTAQDLYLFYIMFEAGLIPMYLIIGIWGGANRIYAS---YKFFLYTLLG 171
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT + + N + + L + K+ + P H W
Sbjct: 172 SVLMLIAMMWMVHEAGTTRIPDLMAY----NFDPKIQIWLFLAFFASFAVKMPMWPVHTW 227
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLI----LAIFSLI 758
+PD + A +++L+ L + I+ LP+ L L++ +++
Sbjct: 228 LPDAHVQAPTAGSVILAGV----LLKMGGYGFIRFSLPMFPEASAQLAPWVWGLSMVAVV 283
Query: 759 IGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII 813
++ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ LF +
Sbjct: 284 YTSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVSGALFLCV 343
Query: 814 TYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
I+ L T E++ + GL P A++ ++F + G P T F
Sbjct: 344 GVIYDRL---------------HTREINRYGGLAINMPRYAVLFLLFTMASVGLPGTSNF 388
Query: 874 YAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F I++ W L+ ++GA
Sbjct: 389 VGEFLSLMGIYQVST-WAALICTTGIILGAA 418
>gi|392411093|ref|YP_006447700.1| NADH dehydrogenase subunit M [Desulfomonile tiedjei DSM 6799]
gi|390624229|gb|AFM25436.1| NADH dehydrogenase subunit M [Desulfomonile tiedjei DSM 6799]
Length = 530
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/375 (45%), Positives = 272/375 (72%), Gaps = 7/375 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGL 279
+ ++WI + I Y LGIDG+SL+ + LT + I++L S DI+ ++ E++ + LIL
Sbjct: 67 ENRVWIADWGISYKLGIDGISLFLVLLTTLLGPIVVLASWEDIQTRVKEFLISLLILQVG 126
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGG-SNRSYAAIKFFLYTLMGSLLMLISMI 338
+IG F +LD LFY+F+E LIP++++IG WG + R YAAIKF LYT++GSLLML++++
Sbjct: 127 MIGVFVSLDLFLFYVFWEVMLIPMYLLIGVWGNPARRLYAAIKFVLYTIVGSLLMLVAIL 186
Query: 339 YLYYISNKS-----FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
LY+++ +S F++L + ++ Q W+F+ FF+AFAIK+P++P HTWLPDAH E
Sbjct: 187 ALYFMAGQSTGTYTFDLLKLYDFAVPLKAQFWMFLAFFLAFAIKVPMFPFHTWLPDAHTE 246
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSV+LAA++LK+G YG +RF++P+FP+A+ + I LS+I +IY + +AMVQ+D
Sbjct: 247 APTVGSVVLAAVLLKMGTYGFIRFAIPLFPNAAADATWWICVLSVIGVIYGAWVAMVQVD 306
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+K+L+A+SS++H+GFV LG+F T ++G+I+QMI+H L + A+F+ +G +Y + TRL
Sbjct: 307 VKRLVAFSSVSHLGFVMLGMFAFTSQGVEGSILQMINHGLSTGALFLIVGMIYERRHTRL 366
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ FGG+ V+P F+VFF+IF+L++ LPG +GF+GEF+I+L K VL ++ +I
Sbjct: 367 IAEFGGLSKVMPLFAVFFMIFTLSSIGLPGLNGFVGEFLILLGTFKVYPVYAVLAASGVI 426
Query: 574 FSAAYSLCLSKNIIF 588
F+A Y L + + ++F
Sbjct: 427 FAAVYMLWMFQRVMF 441
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 12/201 (5%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
YD + + A FL + K FP HTWLPD+ E PT S ++ AA ++ G +
Sbjct: 207 YDFAVPLKAQFWMFLAFFLAFAIKVPMFPFHTWLPDAHTEAPTVGSVVL-AAVLLKMGTY 265
Query: 86 MITRMS-PLFE-LSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG 143
R + PLF + A I + I + + ++Q D+KR++A+S++S LG+ V
Sbjct: 266 GFIRFAIPLFPNAAADATWWICVLSVIGVIYGAWVAMVQVDVKRLVAFSSVSHLGF--VM 323
Query: 144 LGVSAYTV-----SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCI 198
LG+ A+T SI ++ H LFL G +I +H + I GGL K MP+ +
Sbjct: 324 LGMFAFTSQGVEGSILQMINHGLSTGALFLIVG-MIYERRHTRLIAEFGGLSKVMPLFAV 382
Query: 199 TSLIGLLSLVGAPFFSGFYSK 219
+I LS +G P +GF +
Sbjct: 383 FFMIFTLSSIGLPGLNGFVGE 403
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 24/302 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+L Y+ E+M + + +LI N AAIK+ + I+ S ML I LY + G
Sbjct: 135 DLFLFYVFWEVMLIPMYLLIGVWGNPARRLYAAIKFVLYTIVGSLLMLVAILALYFMAGQ 194
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLL 717
F+++KL + + A + + L+F K+ + PFH W+PD + A + +++
Sbjct: 195 STGTYTFDLLKLYDFAVPLKAQFWMFLAFFLAFAIKVPMFPFHTWLPDAHTEAPTVGSVV 254
Query: 718 LSTTPKLSLFVIIYRLLIKCLLPLVIN------WQKILLILAIFSLIIGNVSAITQYNFK 771
L+ L + I+ +PL N W + +L++ +I G A+ Q + K
Sbjct: 255 LAAV----LLKMGTYGFIRFAIPLFPNAAADATWW--ICVLSVIGVIYGAWVAMVQVDVK 308
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
R++A+SS++H+G ++ + + + I + GL +F I+G +I +
Sbjct: 309 RLVAFSSVSHLGFVMLGMFAFTSQGVEGSILQMINHGL--STGALFLIVG----MIYERR 362
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWL 891
+T + F GL + P A+ MIF S G P GF +F I F+ ++
Sbjct: 363 HTRLIAE----FGGLSKVMPLFAVFFMIFTLSSIGLPGLNGFVGEFLILLGTFKVYPVYA 418
Query: 892 LL 893
+L
Sbjct: 419 VL 420
>gi|291280345|ref|YP_003497180.1| NADH-quinone oxidoreductase subunit M [Deferribacter desulfuricans
SSM1]
gi|290755047|dbj|BAI81424.1| NADH-quinone oxidoreductase, M subunit [Deferribacter desulfuricans
SSM1]
Length = 499
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 180/376 (47%), Positives = 256/376 (68%), Gaps = 8/376 (2%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+K W+ + I Y++G+DG+S+ + LT +T+I IL S I K+ E+ A LIL
Sbjct: 63 EKYSWVKAWGISYYVGVDGISILMVFLTTLLTMISILASFKYIGKRQREFYLAMLILEAA 122
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
I+G F ALD LFYIF+EA LIP+++IIG WGG R YAAIKFFLYTL GS+LM++++I
Sbjct: 123 IVGVFVALDFFLFYIFWEAMLIPMYLIIGVWGGQRRIYAAIKFFLYTLAGSVLMMLAIIA 182
Query: 340 LYYISNKSFNILSWHQLSITKIE-------QIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
LY+ + ++ L IT Q +F+ FF+ FAIK+P++P HTWLPDAHV
Sbjct: 183 LYFKHGQLTGEYTFDILKITAASAQYSVGFQTIVFLAFFLGFAIKVPMFPFHTWLPDAHV 242
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
EAPT GSVILA ++LK+G YG LRF LPI P AS F LI LS+I+IIY +L+AMVQ
Sbjct: 243 EAPTAGSVILAGVLLKMGTYGFLRFCLPITPVASVKFVPLIAALSVIAIIYGALVAMVQE 302
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KKL+AYSS++HMGFVTLGI+ L + I+G I+QM +H +I+ A+F+ IG +Y + TR
Sbjct: 303 DVKKLVAYSSVSHMGFVTLGIYALNQAGIEGGILQMFNHGIITGALFLLIGLIYERTHTR 362
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
LI+++GGI +P ++ F IFS + LP GFIGEF++++ + K ++ ++ +
Sbjct: 363 LIADYGGIAKYVPVYATIFAIFSFGSIGLPSMGGFIGEFLVLVGSFKSLSNYAIVAASGV 422
Query: 573 IFSAAYSLCLSKNIIF 588
IF+A Y L + + + F
Sbjct: 423 IFAAVYMLWMYQRVFF 438
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 40 FLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSN 98
FL +G K FP HTWLPD+ +E PT A ++I A ++ G + R F L
Sbjct: 217 FLAFFLGFAIKVPMFPFHTWLPDAHVEAPT-AGSVILAGVLLKMGTYGFLR----FCLPI 271
Query: 99 TALSIILFIGAITAF------FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAY 149
T ++ + F+ I A + L+ ++Q D+K+++AYS++S +G++T+G L +
Sbjct: 272 TPVASVKFVPLIAALSVIAIIYGALVAMVQEDVKKLVAYSSVSHMGFVTLGIYALNQAGI 331
Query: 150 TVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
I + H LFL G +I H + I + GG+ KY+P+ I +G
Sbjct: 332 EGGILQMFNHGIITGALFLLIG-LIYERTHTRLIADYGGIAKYVPVYATIFAIFSFGSIG 390
Query: 210 APFFSGF 216
P GF
Sbjct: 391 LPSMGGF 397
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 20/263 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLN----NINCSVLALSLLLI 686
AAIK+F+ + S M+ I LY G L + F+++K+ + + L
Sbjct: 161 AAIKFFLYTLAGSVLMMLAIIALYFKHGQLTGEYTFDILKITAASAQYSVGFQTIVFLAF 220
Query: 687 IVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCL--LPLV-I 743
+G + K+ + PFH W+PD + A +++L+ + L + Y L CL P+ +
Sbjct: 221 FLGFAIKVPMFPFHTWLPDAHVEAPTAGSVILA---GVLLKMGTYGFLRFCLPITPVASV 277
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
+ ++ L++ ++I G + A+ Q + K+++AYSS++HMG + I ++ + I
Sbjct: 278 KFVPLIAALSVIAIIYGALVAMVQEDVKKLVAYSSVSHMGFVTLGIYALNQAGIEGGILQ 337
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ G+ I +F ++G +I + +T D + G+ + P A I IF F
Sbjct: 338 MFNHGI--ITGALFLLIG----LIYERTHTRLIAD----YGGIAKYVPVYATIFAIFSFG 387
Query: 864 LAGFPPTIGFYAKFFIFEKIFET 886
G P GF +F + F++
Sbjct: 388 SIGLPSMGGFIGEFLVLVGSFKS 410
>gi|206602048|gb|EDZ38530.1| NADH dehydrogenase (quinone), chain M [Leptospirillum sp. Group II
'5-way CG']
Length = 500
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 177/380 (46%), Positives = 269/380 (70%), Gaps = 1/380 (0%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
+TC+ LI L ++G S + +WI + NI+Y LG+DG+S+ I +T F+ +
Sbjct: 43 LTCVEFLISLDLVLGMNPGSFRMQFTEDHLWIPFANIHYSLGVDGISIVLIIMTTFLLPM 102
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
+L S I ++ E+M LIL G+++G F A D +LFY+F+E+ LIP+++IIG WGG
Sbjct: 103 CVLTSWKGISTRVVEFMMTLLILEGIMVGVFAATDFVLFYVFWESMLIPMYLIIGVWGGP 162
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIA 373
NR YA IKFFLYTL GSLL+L+ +I LY++ +FNI+ + + Q + F+ F+A
Sbjct: 163 NRLYATIKFFLYTLAGSLLLLLVIISLYFVGGHTFNIVQLMGQHYSMLFQEFAFVAMFVA 222
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
FA+K+P++P HTWLPDAHVEAPT GSVILA++MLK+G YG LRFSLP+FP+AS++F+ LI
Sbjct: 223 FAVKVPMFPFHTWLPDAHVEAPTAGSVILASVMLKMGAYGFLRFSLPMFPEASHFFTPLI 282
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHAL 493
LSL I++ +L+A+ Q D+KKLIAYSS++HMG VTLGIF+ ++GA++ MI+H +
Sbjct: 283 FGLSLAGIVWGALMALAQEDMKKLIAYSSVSHMGIVTLGIFVFNYQGLEGALMGMINHGV 342
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+ A+F+ +G LY++ +R +S++GGI ++P FS F+IFS+++ LPG + FIGEF++
Sbjct: 343 TTGALFLCVGVLYDRTHSRQLSDYGGIAKLMPVFSTMFMIFSMSSLGLPGLNSFIGEFLV 402
Query: 554 ILSAVKFNFCIGVLTSTALI 573
+L + + + VL +T +I
Sbjct: 403 LLGTFRQHSALAVLATTVII 422
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 8/187 (4%)
Query: 39 AFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL 96
AF+ + K FP HTWLPD+ +E PT A ++I A+ M+ G + R S P+F
Sbjct: 215 AFVAMFVAFAVKVPMFPFHTWLPDAHVEAPT-AGSVILASVMLKMGAYGFLRFSLPMFPE 273
Query: 97 SNTALSIILFIGAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAY---TVS 152
++ + ++F ++ G L+ + Q D+K++IAYS++S +G +T+G+ V Y +
Sbjct: 274 ASHFFTPLIFGLSLAGIVWGALMALAQEDMKKLIAYSSVSHMGIVTLGIFVFNYQGLEGA 333
Query: 153 IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPF 212
+ ++ H LFL G ++ + H++ + + GG+ K MP+ +I +S +G P
Sbjct: 334 LMGMINHGVTTGALFLCVG-VLYDRTHSRQLSDYGGIAKLMPVFSTMFMIFSMSSLGLPG 392
Query: 213 FSGFYSK 219
+ F +
Sbjct: 393 LNSFIGE 399
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 25/264 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVL--ALSLLLIIV 688
A IK+F+ + S +L I LY + G FN+++L + S+L + + + V
Sbjct: 167 ATIKFFLYTLAGSLLLLLVIISLYFVGG-----HTFNIVQLMGQHYSMLFQEFAFVAMFV 221
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
+ K+ + PFH W+PD + A +++L++ + L + Y L + LP+
Sbjct: 222 AFAVKVPMFPFHTWLPDAHVEAPTAGSVILAS---VMLKMGAYGFL-RFSLPMFPEASHF 277
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ ++ L++ ++ G + A+ Q + K++IAYSS++HMG++ I +
Sbjct: 278 FTPLIFGLSLAGIVWGALMALAQEDMKKLIAYSSVSHMGIVTLGIFVFN--------YQG 329
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ L +I + F + +L + T ++ +L + G+ + P + + MIF S
Sbjct: 330 LEGALMGMINHGVTTGALFLCVGVLYDRTHSR--QLSDYGGIAKLMPVFSTMFMIFSMSS 387
Query: 865 AGFPPTIGFYAKFFIFEKIFETQK 888
G P F +F + F
Sbjct: 388 LGLPGLNSFIGEFLVLLGTFRQHS 411
>gi|399020467|ref|ZP_10722597.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Herbaspirillum sp. CF444]
gi|398094882|gb|EJL85236.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Herbaspirillum sp. CF444]
Length = 699
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR+G
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGFILGIGLLLAY 200
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSMNYGEVFAKRGELAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS+IL IGAITA FMG LG +Q DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSVILVIGAITALFMGFLGTMQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL K+MPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKHMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
Query: 355 QLSITKIEQIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLK 408
QL++ + W+ +T F+ K +P+H WLPD+ +E PT ++I AA M+
Sbjct: 218 QLTLPGTD--WMLLTVACICLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVT 274
Query: 409 LGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGF 468
G + + R S P+F + S +I+ + I+ +++ + +Q DIK+++AYS+++ +G+
Sbjct: 275 AGIFMVSRMS-PLFELSDTALS-VILVIGAITALFMGFLGTMQTDIKRVVAYSTLSQLGY 332
Query: 469 VTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHF 527
+T+ L + A+ +++HA + +F+ G + + + N GG+ +P
Sbjct: 333 MTVA---LGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKHMPIT 389
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+ ++ SLA P SGF + II +A
Sbjct: 390 WITSLLGSLALIGTPFFSGFYSKDSIIEAA 419
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 143/303 (47%), Gaps = 24/303 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + +A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G++ +F + L + +L ++ + + VG K P
Sbjct: 191 IL-GIGLLLAYAGSMNYGEVFAKRGELAQLTLPGTDWMLLTVACICLFVGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLIL-AIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ L L ++L++ AI +L
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSVILVIGAITALF 307
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + + Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 308 MGFLGTM-QTDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 360
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 361 -LGAGSVIIGMHHD-----QDMRNMGGLRKHMPITWITSLLGSLALIGTPFFSGFYSKDS 414
Query: 879 IFE 881
I E
Sbjct: 415 IIE 417
>gi|398386441|ref|ZP_10544442.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingobium sp. AP49]
gi|397718224|gb|EJK78816.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingobium sp. AP49]
Length = 517
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/357 (47%), Positives = 256/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I LT F+ I I S + I K++ EYM+AFL + L+IG F A D L
Sbjct: 74 WALGIDGIALLLIALTVFLMPICIGASWNAINKRVGEYMAAFLFMEVLMIGVFTAQDLYL 133
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYI FEA LIP+++IIG WGG+NR YA+ KFFLYTL+GS+LMLI+M+++ + + + I
Sbjct: 134 FYIMFEAGLIPMYLIIGIWGGANRIYASYKFFLYTLLGSVLMLIAMMWMVHEAGTT-RIP 192
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ QIWLF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 193 DLMAYNFDPKIQIWLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 252
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS + + LS+++++Y SLIA+VQ D+KKLIAYSS+AHM VT+
Sbjct: 253 YGFIRFSLPMFPEASAQLAPWVWGLSMVAVVYTSLIALVQSDMKKLIAYSSVAHMAIVTI 312
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F + ++GA++ M+ H L+S A+F+ +G +Y+++ TR I+ +GG+ +P ++V F
Sbjct: 313 GLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREINRYGGLAINMPRYAVLF 372
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ ++ + + ++ +T +I AAY L L + I +
Sbjct: 373 LLFTMASVGLPGTSNFVGEFLSLMGIYQVSTWAALICTTGIILGAAYMLYLYRRICY 429
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ ++
Sbjct: 218 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPWVWG 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +T+GL + ++ ++ H
Sbjct: 277 LSMVAVVYTSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVS 336
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ VG P S F +
Sbjct: 337 GALFLCVG-VIYDRLHTREINRYGGLAINMPRYAVLFLLFTMASVGLPGTSNFVGE 391
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 138/331 (41%), Gaps = 41/331 (12%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 115 FLFMEVLMIGVFTAQDLYLFYIMFEAGLIPMYLIIGIWGGANRIYAS---YKFFLYTLLG 171
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT + + N + + L + K+ + P H W
Sbjct: 172 SVLMLIAMMWMVHEAGTTRIPDLMAY----NFDPKIQIWLFLAFFASFAVKMPMWPVHTW 227
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLI----LAIFSLI 758
+PD + A +++L+ L + I+ LP+ L L++ +++
Sbjct: 228 LPDAHVQAPTAGSVILAGV----LLKMGGYGFIRFSLPMFPEASAQLAPWVWGLSMVAVV 283
Query: 759 IGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII 813
++ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ LF +
Sbjct: 284 YTSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVSGALFLCV 343
Query: 814 TYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
I+ L T E++ + GL P A++ ++F + G P T F
Sbjct: 344 GVIYDRL---------------HTREINRYGGLAINMPRYAVLFLLFTMASVGLPGTSNF 388
Query: 874 YAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F I++ W L+ ++GA
Sbjct: 389 VGEFLSLMGIYQVST-WAALICTTGIILGAA 418
>gi|315122713|ref|YP_004063202.1| NADH dehydrogenase subunit M [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496115|gb|ADR52714.1| NADH dehydrogenase subunit M [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 491
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 202/366 (55%), Positives = 272/366 (74%), Gaps = 4/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WIDYF Y+ LG+DG+S+ + LTAF+T IL S + ++++ EYM AFLIL + IGA
Sbjct: 70 WIDYFCDYH-LGVDGISILLVVLTAFLTPFCILSSWESVQERFKEYMIAFLILESMTIGA 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LD +LFYIFFEA+LIP+FIIIG WGG+ R YAA KFFLYT GS+ ML++++ + +
Sbjct: 129 FLSLDIVLFYIFFEASLIPMFIIIGVWGGNERVYAAYKFFLYTFFGSVFMLLAIMVMCW- 187
Query: 344 SNKSFNILSWHQLSITKIE-QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
K+ +I+ + S + Q WL++ FFI+FAIKIP++P HTWLP AHV+APT GSV L
Sbjct: 188 DKKTTSIIDLYASSSFPMSIQCWLWLAFFISFAIKIPMFPFHTWLPSAHVQAPTAGSVFL 247
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A IMLK+G YG LRF LP+FP AS YFS LI+ LS+ISIIY SL+AMVQ DIKKLIAYSS
Sbjct: 248 AGIMLKMGGYGCLRFLLPLFPLASKYFSPLILILSVISIIYASLVAMVQRDIKKLIAYSS 307
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
IAHMG+VT+GIF + ++GA+ QM+SH L+SSA+F SIG LY+++ TR + +GG++
Sbjct: 308 IAHMGYVTIGIFSGIRSGVEGAMFQMLSHGLVSSALFFSIGILYDRLHTRDLYAYGGLVR 367
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P ++V ++F++AN LPGTSGFIGEF+II+SA + I V S ++ SA YSL
Sbjct: 368 NMPRYAVVMMVFTMANIGLPGTSGFIGEFLIIVSAFFNHNMIAVFASFGVVLSALYSLWF 427
Query: 583 SKNIIF 588
+ I+F
Sbjct: 428 YRKIVF 433
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFI 107
K FP HTWLP + ++ PT S + + G + + PLF L++ S +IL +
Sbjct: 222 KIPMFPFHTWLPSAHVQAPTAGSVFLAGIMLKMGGYGCLRFLLPLFPLASKYFSPLILIL 281
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL--GV-SAYTVSIFHLMTHAFFKA 164
I+ + L+ ++Q DIK++IAYS+++ +GY+T+G+ G+ S ++F +++H +
Sbjct: 282 SVISIIYASLVAMVQRDIKKLIAYSSIAHMGYVTIGIFSGIRSGVEGAMFQMLSHGLVSS 341
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LF S G I+ + H +D+ GGL + MP + ++ ++ +G P SGF
Sbjct: 342 ALFFSIG-ILYDRLHTRDLYAYGGLVRNMPRYAVVMMVFTMANIGLPGTSGF 392
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 113/256 (44%), Gaps = 27/256 (10%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ S FML I ++ T SI ++ ++ S+ L +
Sbjct: 163 AAYKFFLYTFFGSVFMLLAIMVMCWDKKT---TSIIDLYASSSFPMSIQCWLWLAFFISF 219
Query: 691 SFKLGISPFHMWVPDVYQGASII-------ITLLLSTTPKLSLFVIIYRLLIKCLLPLVI 743
+ K+ + PFH W+P + A I L + L + ++ L K PL++
Sbjct: 220 AIKIPMFPFHTWLPSAHVQAPTAGSVFLAGIMLKMGGYGCLRFLLPLFPLASKYFSPLIL 279
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
I +I A ++ A+ Q + K++IAYSSIAHMG + I S S +F
Sbjct: 280 ILSVISIIYA-------SLVAMVQRDIKKLIAYSSIAHMGYVTIGIFSGIRSGVEGAMFQ 332
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + + +F +G +L + T +L + GL + P A++MM+F +
Sbjct: 333 MLSHGL--VSSALFFSIG------ILYDRL--HTRDLYAYGGLVRNMPRYAVVMMVFTMA 382
Query: 864 LAGFPPTIGFYAKFFI 879
G P T GF +F I
Sbjct: 383 NIGLPGTSGFIGEFLI 398
>gi|374584317|ref|ZP_09657409.1| NADH dehydrogenase subunit M [Leptonema illini DSM 21528]
gi|373873178|gb|EHQ05172.1| NADH dehydrogenase subunit M [Leptonema illini DSM 21528]
Length = 515
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/362 (47%), Positives = 261/362 (72%), Gaps = 4/362 (1%)
Query: 229 FNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCAL 287
F I Y LG+DG+S W + LT F+ +++L S IK++ A Y S+ LIL ++GAF AL
Sbjct: 66 FGISYKLGLDGVSYWMVLLTTFLFPLVVLGSYSSIKERAAGYYSSILILQTGVLGAFLAL 125
Query: 288 DGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-YYISNK 346
D LFYIF+E L+P+F IIG WGG +R YA +KF L+T++GSLLML++++YL ++ +
Sbjct: 126 DLFLFYIFWEVMLVPMFFIIGIWGGKDRVYATVKFVLFTMIGSLLMLVAVLYLAHHAGSF 185
Query: 347 SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
+ I+ +L + Q W+F F +AF IK+P++P HTWLPDAH EAP GSVILA ++
Sbjct: 186 DYTIIIEKRLPLPA--QYWVFAAFALAFLIKVPVFPFHTWLPDAHTEAPAGGSVILAGVL 243
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LKLG YGLLRF+LP+FP+AS++F+ L++ L++I I++ ++ A VQ D+K+LIAYSS++HM
Sbjct: 244 LKLGTYGLLRFNLPLFPEASHFFAPLMMVLAVIGIVHGAMAAAVQPDMKRLIAYSSVSHM 303
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
G++ LGIF ++ IQG++IQMI+HA+ + AMF IG +Y+Q TR I+++GGI ++P
Sbjct: 304 GYIVLGIFTFSESGIQGSLIQMINHAISTGAMFFLIGMIYDQTHTRKIADYGGIAKIVPV 363
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
F+ F+I +LA+ LPG +GFIGE++I++SA + ++ +G + + ++ A Y L L +
Sbjct: 364 FATVFLISTLASAGLPGLNGFIGEYIILVSAFQADWLLGAIAVSGVVLGAWYLLKLYGKV 423
Query: 587 IF 588
F
Sbjct: 424 FF 425
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMI 87
+K L + A F + + K FP HTWLPD+ ++I A ++ G + +
Sbjct: 192 EKRLPLPAQYWVFAAFALAFLIKVPVFPFHTWLPDAHTEAPAGGSVILAGVLLKLGTYGL 251
Query: 88 TRMS-PLFELSNTALSIILFIGAITAFFMGLLGI-IQNDIKRIIAYSTLSQLGYMTVGL- 144
R + PLF ++ + ++ + A+ G + +Q D+KR+IAYS++S +GY+ +G+
Sbjct: 252 LRFNLPLFPEASHFFAPLMMVLAVIGIVHGAMAAAVQPDMKRLIAYSSVSHMGYIVLGIF 311
Query: 145 --GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLI 202
S S+ ++ HA +F G +I + H + I + GG+ K +P+ LI
Sbjct: 312 TFSESGIQGSLIQMINHAISTGAMFFLIG-MIYDQTHTRKIADYGGIAKIVPVFATVFLI 370
Query: 203 GLLSLVGAPFFSGF 216
L+ G P +GF
Sbjct: 371 STLASAGLPGLNGF 384
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 28/217 (12%)
Query: 693 KLGISPFHMWVPDVY----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN---- 744
K+ + PFH W+PD + G S+I+ +L KL + L++ LPL
Sbjct: 214 KVPVFPFHTWLPDAHTEAPAGGSVILAGVLL---KLGTYG-----LLRFNLPLFPEASHF 265
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ ++++LA+ ++ G ++A Q + KR+IAYSS++HMG ++ I + S
Sbjct: 266 FAPLMMVLAVIGIVHGAMAAAVQPDMKRLIAYSSVSHMGYIVLGIFTFSES--------G 317
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
L +I + + F +I ++ + T T ++ + G+ + P A + +I +
Sbjct: 318 IQGSLIQMINHAISTGAMFFLIGMIYDQT--HTRKIADYGGIAKIVPVFATVFLISTLAS 375
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLI 901
AG P GF ++ I F+ WLL I + ++
Sbjct: 376 AGLPGLNGFIGEYIILVSAFQAD--WLLGAIAVSGVV 410
>gi|119897698|ref|YP_932911.1| NADH-ubiquinone oxidoreductase subunit L [Azoarcus sp. BH72]
gi|119670111|emb|CAL94024.1| NADH-ubiquinone oxidoreductase, chain L probable [Azoarcus sp.
BH72]
Length = 674
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWYD+P AI ANLKAFL+NR
Sbjct: 134 MSNNFLQLFFGWEAVGLVSYLLIGFWYDRPTAIYANLKAFLVNRVGDFGFLLGIGLIVAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 194 TGSLNYQEVFAKAQELSAMDMAVTGWPLLTAICICLFIGAMGKSAQVPLHVWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+ ALS +L IGA TA FMG LGI+QNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVARMSPLFELSDVALSFVLVIGATTALFMGFLGIVQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY+ ++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 314 VVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMPIT TSL+G L+L+G PFFSGFYSKD
Sbjct: 374 GLWKYMPITWFTSLLGSLALIGFPFFSGFYSKDS 407
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 142/304 (46%), Gaps = 22/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + + A +K F++ +
Sbjct: 124 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYDRPTAIYANLKAFLVNRVGDFGF 183
Query: 647 LYGISILYGITGTLELQSIF-NVIKLNNINCSVLALSLLLII-----VGLSFKLGISPFH 700
L GI ++ TG+L Q +F +L+ ++ +V LL I +G K P H
Sbjct: 184 LLGIGLIVAYTGSLNYQEVFAKAQELSAMDMAVTGWPLLTAICICLFIGAMGKSAQVPLH 243
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLII 759
+W+PD +G + I L+ + T + ++ R+ L L + +L+I A +L +
Sbjct: 244 VWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDVALSFVLVIGATTALFM 301
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
G + I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 302 GFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYSAAVFHLMTHAFFKALLF---- 353
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P ++ +L GFP GFY+K I
Sbjct: 354 LGAGSVIIGMHHD-----QDMRNMGGLWKYMPITWFTSLLGSLALIGFPFFSGFYSKDSI 408
Query: 880 FEKI 883
E +
Sbjct: 409 IEAV 412
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + R S P+F + S ++ + +
Sbjct: 241 PLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSDVALS-FVLVIGATT 297
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ + +VQ DIK+++AYS+++ +G++T+ L + A+ +++HA + +F+
Sbjct: 298 ALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYSAAVFHLMTHAFFKALLFL 354
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
G + + + N GG+ +P ++ SLA P SGF + II
Sbjct: 355 GAGSVIIGMHHDQDMRNMGGLWKYMPITWFTSLLGSLALIGFPFFSGFYSKDSII 409
>gi|381200910|ref|ZP_09908042.1| proton-translocating NADH-quinone oxidoreductase chain M
[Sphingobium yanoikuyae XLDN2-5]
Length = 517
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/357 (47%), Positives = 256/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I LT F+ I I S + I K++ EYM+AFL + L+IG F A D L
Sbjct: 74 WALGIDGIALLLIALTVFLMPICIGASWNAINKRVGEYMAAFLFMEVLMIGVFTAQDLYL 133
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYI FEA LIP+++IIG WGG+NR YA+ KFFLYTL+GS+LMLI+M+++ + + + I
Sbjct: 134 FYIMFEAGLIPMYLIIGIWGGANRIYASYKFFLYTLLGSVLMLIAMMWMVHEAGTT-RIP 192
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ QIWLF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 193 DLMAYNFDPKIQIWLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 252
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS + + LS+++++Y SLIA+VQ D+KKLIAYSS+AHM VT+
Sbjct: 253 YGFIRFSLPMFPEASAQLAPWVWGLSMVAVVYTSLIALVQSDMKKLIAYSSVAHMAIVTI 312
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F + ++GA++ M+ H L+S A+F+ +G +Y+++ TR I+ +GG+ +P ++V F
Sbjct: 313 GLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREINRYGGLAINMPRYAVLF 372
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ ++ + + ++ +T +I AAY L L + I +
Sbjct: 373 LLFTMASVGLPGTSNFVGEFLSLMGIYQVSTWAALICTTGIILGAAYMLYLYRRICY 429
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ ++
Sbjct: 218 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPWVWG 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +T+GL + ++ ++ H
Sbjct: 277 LSMVAVVYTSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVS 336
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ VG P S F +
Sbjct: 337 GALFLCVG-VIYDRLHTREINRYGGLAINMPRYAVLFLLFTMASVGLPGTSNFVGE 391
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 138/331 (41%), Gaps = 41/331 (12%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 115 FLFMEVLMIGVFTAQDLYLFYIMFEAGLIPMYLIIGIWGGANRIYAS---YKFFLYTLLG 171
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT + + N + + L + K+ + P H W
Sbjct: 172 SVLMLIAMMWMVHEAGTTRIPDLMAY----NFDPKIQIWLFLAFFASFAVKMPMWPVHTW 227
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLI----LAIFSLI 758
+PD + A +++L+ L + I+ LP+ L L++ +++
Sbjct: 228 LPDAHVQAPTAGSVILAGV----LLKMGGYGFIRFSLPMFPEASAQLAPWVWGLSMVAVV 283
Query: 759 IGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII 813
++ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ LF +
Sbjct: 284 YTSLIALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVSGALFLCV 343
Query: 814 TYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGF 873
I+ L T E++ + GL P A++ ++F + G P T F
Sbjct: 344 GVIYDRL---------------HTREINRYGGLAINMPRYAVLFLLFTMASVGLPGTSNF 388
Query: 874 YAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
+F I++ W L+ ++GA
Sbjct: 389 VGEFLSLMGIYQVST-WAALICTTGIILGAA 418
>gi|134095020|ref|YP_001100095.1| NADH dehydrogenase I subunit L [Herminiimonas arsenicoxydans]
gi|133738923|emb|CAL61970.1| NADH-quinone oxidoreductase subunit L (NADH dehydrogenase I subunit
L) (NDH-1 subunit L) [Herminiimonas arsenicoxydans]
Length = 687
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY KP A+ AN+KAFL+NRIG
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTKPTAVVANMKAFLVNRIGDFGFILGIGLLLAY 200
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSMDYAEVFAKKDELALLTLPGTDWMLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS IL IG+ITA FMG LGIIQNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFILIIGSITALFMGFLGIIQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYM IT ITSL+G L+L+G P FSGFYSKD
Sbjct: 381 GLRKYMKITWITSLLGSLALIGTPLFSGFYSKDS 414
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++I S I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 292 TALSFILIIGS-ITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F++ G + + I N GG+ + + ++ SLA P S
Sbjct: 348 HLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMKITWITSLLGSLALIGTPLFS 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFAMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTKPTAVVANMKAFLVNRIGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+++ +F ++ L + +L ++ + + +G K P
Sbjct: 191 IL-GIGLLLAYAGSMDYAEVFAKKDELALLTLPGTDWMLLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFILIIGSITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 308 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L A VII + ++ ++ GL + + ++ +L G P GFY+K I
Sbjct: 361 LAAGSVIIGMHHD-----QDIRNMGGLRKYMKITWITSLLGSLALIGTPLFSGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + T
Sbjct: 416 IEAVHATH 423
>gi|197941020|gb|ACH78246.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
Length = 495
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 256/366 (69%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GSL ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LK G YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 18/199 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ I + + L ++ + K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLS--TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+LL T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKFGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIIS 791
+IAYSS+AHM L+ + S
Sbjct: 307 IIAYSSVAHMNLVTIGMFS 325
>gi|217970167|ref|YP_002355401.1| proton-translocating NADH-quinone oxidoreductase subunit L [Thauera
sp. MZ1T]
gi|217507494|gb|ACK54505.1| proton-translocating NADH-quinone oxidoreductase, chain L [Thauera
sp. MZ1T]
Length = 675
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY++P AI AN+KAFL+NR
Sbjct: 134 MSNNFLQLFFGWEAVGLVSYLLIGFWYERPTAIYANMKAFLVNRVGDFGFLLGIGLVAAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 194 AGSLDYAEVFAKAKELSVTEMAVTGWPLLTAICICLFIGAMGKSAQVPLHVWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGA TA FMG LGI+QNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLVIGATTALFMGFLGIVQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY+ ++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 314 VVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 374 GLRKYMPITWITSLLGSLALIGFPFFSGFYSKDS 407
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 135/271 (49%), Gaps = 18/271 (6%)
Query: 296 FEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSL--LMLISMIYLYYISNKSFNILS 352
+EA + +++IG W + YA +K FL +G L+ I ++ Y S + +
Sbjct: 145 WEAVGLVSYLLIGFWYERPTAIYANMKAFLVNRVGDFGFLLGIGLVAAYAGSLDYAEVFA 204
Query: 353 -WHQLSITKIEQI-WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAA 404
+LS+T++ W +T FI K P+H WLPD+ +E PT ++I AA
Sbjct: 205 KAKELSVTEMAVTGWPLLTAICICLFIGAMGKSAQVPLHVWLPDS-MEGPTPISALIHAA 263
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
M+ G + + R S P+F + S ++ + + +++ + +VQ DIK+++AYS+++
Sbjct: 264 TMVTAGIFMVARMS-PLFELSDTALS-FVLVIGATTALFMGFLGIVQNDIKRVVAYSTLS 321
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINV 523
+G++T+ L + A+ +++HA + +F+ G + + + N GG+
Sbjct: 322 QLGYMTVA---LGVSAYSAAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKY 378
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
+P + ++ SLA P SGF + II
Sbjct: 379 MPITWITSLLGSLALIGFPFFSGFYSKDSII 409
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 135/306 (44%), Gaps = 20/306 (6%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K F++ +
Sbjct: 124 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYERPTAIYANMKAFLVNRVGDFGF 183
Query: 647 LYGISILYGITGTLELQSIFNVIK-LNNINCSVLALSLLLII-----VGLSFKLGISPFH 700
L GI ++ G+L+ +F K L+ +V LL I +G K P H
Sbjct: 184 LLGIGLVAAYAGSLDYAEVFAKAKELSVTEMAVTGWPLLTAICICLFIGAMGKSAQVPLH 243
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 244 VWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLVIGATTALFM 301
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
I Q + KR++AYS+++ +G M +++ S + +F+ F + + L
Sbjct: 302 GFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYSAAVFHLMTHAFFKALLF----L 354
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA VII + ++ ++ GL + P + ++ +L GFP GFY+K I
Sbjct: 355 GAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLLGSLALIGFPFFSGFYSKDSII 409
Query: 881 EKIFET 886
E + +
Sbjct: 410 EAVHSS 415
>gi|221633761|ref|YP_002522987.1| NADH-quinone oxidoreductase subunit m [Thermomicrobium roseum DSM
5159]
gi|221157040|gb|ACM06167.1| nadh-quinone oxidoreductase chain m [Thermomicrobium roseum DSM
5159]
Length = 524
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 177/386 (45%), Positives = 263/386 (68%), Gaps = 13/386 (3%)
Query: 217 YSKDKKKI-------WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAE 268
+ +D+ + W+ I Y LG+DG+S + LT +TLI +L S D I+ ++ E
Sbjct: 54 FDRDQSTLQFTETFDWLPELGIAYRLGVDGISAPLVGLTTLLTLIAVLASWDPIRHRVRE 113
Query: 269 YMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLM 328
Y L+L+ ++G F +LD LFY+F+E LIP+ +IIG WG +NR YAA+KFFLYTL
Sbjct: 114 YYITLLLLATGMLGVFVSLDLFLFYVFWEIVLIPMALIIGVWGSANRVYAAVKFFLYTLA 173
Query: 329 GSLLMLISMIYLY--YISN---KSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPM 383
GSLLML+ ++ +Y Y ++ ++L Q ++ Q W F+ FF+AFAIK+P+WP
Sbjct: 174 GSLLMLVGIVAIYQEYFRQTGIRTLDVLQLAQGQYSEAFQFWTFLAFFLAFAIKVPMWPF 233
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIY 443
HTWLPDAHVEAPT GSVILA ++LK+G YG LRF+LP+FPDA+ ++ I+ LS+I+I+Y
Sbjct: 234 HTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFNLPLFPDATRMWAPAIVVLSVIAILY 293
Query: 444 ISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
+L+A+VQ D KKL+AYSS++HMGFVTLGIF+L + + GA++ M+SH ++SA+F+ +G
Sbjct: 294 GALMALVQQDFKKLVAYSSVSHMGFVTLGIFVLNQPGLSGAMVVMLSHGFVTSALFLIVG 353
Query: 504 FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC 563
LY + TR ++ FGG+ +P F+ FF +F+LA+ LPG SGF+GEF+ +L +
Sbjct: 354 VLYERAHTRDLAAFGGLARNMPVFAAFFGLFTLASLGLPGLSGFVGEFLALLGGFRAYRW 413
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIFV 589
GVL + +I +A Y L + + + V
Sbjct: 414 AGVLGTIVVILAAWYMLRVYQRVALV 439
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K +P HTWLPD+ +E PT A ++I A ++ G + R + PLF + + I+
Sbjct: 227 KVPMWPFHTWLPDAHVEAPT-AGSVILAGVLLKMGGYGFLRFNLPLFPDATRMWAPAIVV 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D K+++AYS++S +G++T+G+ V + ++ +++H F
Sbjct: 286 LSVIAILYGALMALVQQDFKKLVAYSSVSHMGFVTLGIFVLNQPGLSGAMVVMLSHGFVT 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSL--VGAPFFSGFYSK 219
+ LFL G ++ H +D+ GGL + MP+ + GL +L +G P SGF +
Sbjct: 346 SALFLIVG-VLYERAHTRDLAAFGGLARNMPV--FAAFFGLFTLASLGLPGLSGFVGE 400
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 39/282 (13%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + N ++ AA+K+F+ + S ML GI +Y Q F
Sbjct: 145 LIPMALIIGVWGSANRVY---AAVKFFLYTLAGSLLMLVGIVAIY--------QEYFRQT 193
Query: 670 KLNNINCSVLA----------LSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+ ++ LA + L + + K+ + PFH W+PD + A +++L+
Sbjct: 194 GIRTLDVLQLAQGQYSEAFQFWTFLAFFLAFAIKVPMWPFHTWLPDAHVEAPTAGSVILA 253
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
L + ++ LPL + W +++L++ +++ G + A+ Q +FK+++A
Sbjct: 254 GV----LLKMGGYGFLRFNLPLFPDATRMWAPAIVVLSVIAILYGALMALVQQDFKKLVA 309
Query: 776 YSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCN 835
YSS++HMG + I + + + G ++ + +F I+G +L +
Sbjct: 310 YSSVSHMGFVTLGIFVLNQPGLSGAMVVMLSHG--FVTSALFLIVG-----VLYER---A 359
Query: 836 KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T +L F GL + P A +F + G P GF +F
Sbjct: 360 HTRDLAAFGGLARNMPVFAAFFGLFTLASLGLPGLSGFVGEF 401
>gi|149927552|ref|ZP_01915806.1| NADH dehydrogenase I, chain L [Limnobacter sp. MED105]
gi|149823825|gb|EDM83051.1| NADH dehydrogenase I, chain L [Limnobacter sp. MED105]
Length = 661
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY K AI ANLKAFL+NR
Sbjct: 131 MSNNFLQLFFGWEAVGLVSYLLIGFWYKKQSAIYANLKAFLVNRVGDFGFILGIGLVMAA 190
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 191 TGSMNYAEVFAQADSLVGQTMPGTDWPLLAVACICLFIGAMGKSAQFPLHVWLPDSMEGP 250
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+ AL+ +L IG+ITA FMG LGIIQNDIKR
Sbjct: 251 TPISALIHAATMVTAGIFMVSRMSPLFELSDIALNFVLVIGSITALFMGFLGIIQNDIKR 310
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V+IFHLMTHAFFKALLFL AGS+II M HNQDIR MG
Sbjct: 311 VVAYSTLSQLGYMTVALGVSAYPVAIFHLMTHAFFKALLFLGAGSVIIGMHHNQDIRYMG 370
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 371 GLWKYMPITWITSLLGSLALIGTPFFSGFYSKDS 404
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 17/200 (8%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F + S
Sbjct: 224 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLF-ELS 280
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
N ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + AI
Sbjct: 281 DIALNFVLVIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAIF 337
Query: 487 QMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSL 541
+++HA + +F+ IG +NQ I GG+ +P + ++ SLA
Sbjct: 338 HLMTHAFFKALLFLGAGSVIIGMHHNQD----IRYMGGLWKYMPITWITSLLGSLALIGT 393
Query: 542 PGTSGFIGEFMIILSAVKFN 561
P SGF + II AV F+
Sbjct: 394 PFFSGFYSKDSII-EAVHFS 412
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 146/305 (47%), Gaps = 24/305 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 121 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYKKQSAIYANLKAFLVNRVGDFGF 180
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TG++ +F + + +LA++ + + +G K P
Sbjct: 181 IL-GIGLVMAATGSMNYAEVFAQADSLVGQTMPGTDWPLLAVACICLFIGAMGKSAQFPL 239
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L + +N+ +L+I +I +L
Sbjct: 240 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDIALNF--VLVIGSITALF 297
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S + IF+ F + +
Sbjct: 298 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAIFHLMTHAFFKALLF--- 350
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + +N ++ GL + P + ++ +L G P GFY+K
Sbjct: 351 -LGAGSVIIGMHHN-----QDIRYMGGLWKYMPITWITSLLGSLALIGTPFFSGFYSKDS 404
Query: 879 IFEKI 883
I E +
Sbjct: 405 IIEAV 409
>gi|341615293|ref|ZP_08702162.1| NADH-quinone oxidoreductase chain M [Citromicrobium sp. JLT1363]
Length = 526
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 254/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LGIDG++L I L+ F+ I IL S + K++ EYM+AFL++ L+IG F A D +L
Sbjct: 72 YALGIDGIALMLIMLSVFLMPICILASWTSVTKRVGEYMAAFLVMELLMIGVFAAQDILL 131
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP+++IIG WGGS+R YA+ KFFLYTL+GS++MLI+M+++ + S +I
Sbjct: 132 FYIFFEAGLIPMYLIIGIWGGSDRIYASFKFFLYTLLGSVVMLIAMLWMIGEAGTS-SIP 190
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
Q Q WL++ FF +FA+K+P+WP+HTWLP AHV+APT GSVILA ++LKLG
Sbjct: 191 VLLQYDFAPEAQTWLWLAFFASFAVKMPMWPVHTWLPAAHVQAPTAGSVILAGVLLKLGG 250
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS F L+ LS+ +++ SLIA+VQ D+KKLIAYSS+AHM VT
Sbjct: 251 YGFIRFSLPMFPEASAQFVWLVFGLSMAAVVITSLIALVQQDMKKLIAYSSVAHMAIVTA 310
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F ++GA++ M+SH L+S A+F+ +G +Y+++ TR I+ +GG+ +P +++FF
Sbjct: 311 GLFAFNFQGLEGAMVMMLSHGLVSGALFLCVGVIYDRLHTREIARYGGLATNMPRYALFF 370
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTSGF+ EF+ + + + + +T +I A Y L L + ++F
Sbjct: 371 LLFTMASIGLPGTSGFVAEFISLAGVYQISSTTTFVLTTGIILGAGYMLYLYRRVVF 427
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLP + ++ PT A ++I A ++ G + R S P+F ++ ++F
Sbjct: 216 KMPMWPVHTWLPAAHVQAPT-AGSVILAGVLLKLGGYGFIRFSLPMFPEASAQFVWLVFG 274
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q D+K++IAYS+++ + +T GL ++ +++H
Sbjct: 275 LSMAAVVITSLIALVQQDMKKLIAYSSVAHMAIVTAGLFAFNFQGLEGAMVMMLSHGLVS 334
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L+ ++ +G P SGF ++
Sbjct: 335 GALFLCVG-VIYDRLHTREIARYGGLATNMPRYALFFLLFTMASIGLPGTSGFVAE 389
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 139/316 (43%), Gaps = 48/316 (15%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F++ +++MI + ++L Y+ E L+ + L + I + I++S K+F+ +L
Sbjct: 113 FLVMELLMIGVFAAQDILLFYIFFEAGLIPMYLIIGIWGGSDRIYAS---FKFFLYTLLG 169
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + G GT S V+ + L + K+ + P H W
Sbjct: 170 SVVMLIAMLWMIGEAGT----SSIPVLLQYDFAPEAQTWLWLAFFASFAVKMPMWPVHTW 225
Query: 703 VPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV--INWQKILLI--LAI 754
+P + A +++L+ ++ +L I+ LP+ + Q + L+ L++
Sbjct: 226 LPAAHVQAPTAGSVILAG--------VLLKLGGYGFIRFSLPMFPEASAQFVWLVFGLSM 277
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGL 809
+++I ++ A+ Q + K++IAYSS+AHM GL F+ ++ + ++ L
Sbjct: 278 AAVVITSLIALVQQDMKKLIAYSSVAHMAIVTAGLFAFNFQGLEGAMVMMLSHGLVSGAL 337
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
F + I+ L T E+ + GL P AL ++F + G P
Sbjct: 338 FLCVGVIYDRL---------------HTREIARYGGLATNMPRYALFFLLFTMASIGLPG 382
Query: 870 TIGFYAKFFIFEKIFE 885
T GF A+F +++
Sbjct: 383 TSGFVAEFISLAGVYQ 398
>gi|241663473|ref|YP_002981833.1| NADH dehydrogenase subunit L [Ralstonia pickettii 12D]
gi|240865500|gb|ACS63161.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Ralstonia pickettii 12D]
Length = 686
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 SGSLSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLIIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFFSGFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFSGFYSKDS 414
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLG 410
WH L++ I FI K +P+H WLPD+ +E PT ++I AA M+ G
Sbjct: 225 DWHMLTVACI-------CLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAG 276
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
+ + R S P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T
Sbjct: 277 IFMVARMS-PLFELSDTALS-FVLIIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMT 334
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSV 529
+ L + Q A+ +++HA + +F+ G + + + N GG+ +P +
Sbjct: 335 VA---LGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWL 391
Query: 530 FFIIFSLANCSLPGTSGFIGEFMII 554
++ SLA P SGF + II
Sbjct: 392 TSLVGSLALIGTPFFSGFYSKDSII 416
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L +G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYSGSLSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLIIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFSGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|103486783|ref|YP_616344.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sphingopyxis alaskensis RB2256]
gi|98976860|gb|ABF53011.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingopyxis alaskensis RB2256]
Length = 517
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/364 (47%), Positives = 258/364 (70%), Gaps = 3/364 (0%)
Query: 227 DYFNIY-YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAF 284
D F + + LGIDG++L I L+ F+ + IL S + IK ++ YM+ FLI+ ++IG F
Sbjct: 65 DLFGRFQWALGIDGMALMLIMLSVFLMPLCILASWEAIKSRVGLYMAMFLIMEVVMIGVF 124
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS 344
A D +LFYIFFEA LIP++ IIG WGG+NR YAA KFFLYTL+GS+LMLI+MI + +
Sbjct: 125 MAQDLLLFYIFFEAGLIPMYFIIGIWGGANRKYAAFKFFLYTLLGSVLMLIAMIAMIAEA 184
Query: 345 NKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAA 404
+ +I + Q WL++ FF + A+K+P+WP+HTWLPDAHV+APT GS+ILA
Sbjct: 185 GTT-DIPTLLNYDFPVEMQTWLWLAFFASLAVKMPMWPVHTWLPDAHVQAPTAGSMILAG 243
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
++LKLG YG LRF +P+FPDAS L+ LS+++++Y SL+A+VQ D+KKLIAYSS+A
Sbjct: 244 VLLKLGAYGFLRFMMPMFPDASAQLMWLVFGLSMVAVVYTSLVALVQNDMKKLIAYSSVA 303
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVI 524
HM VT G+F + I+GA+I M+SH ++S+A+F +G +Y+++ TR I +GG+ +
Sbjct: 304 HMAIVTAGLFAFNQQGIEGALIIMLSHGVVSAALFFCVGVIYDRLHTREIDRYGGLAVNM 363
Query: 525 PHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSK 584
P +++FF++F++A+ LPGTSGF+GEF+ +L + + + + +T +I AAY L L +
Sbjct: 364 PAYALFFMLFTMASIGLPGTSGFVGEFLSLLGIYEASSVVAFVCTTGIILGAAYMLYLYR 423
Query: 585 NIIF 588
++F
Sbjct: 424 RVVF 427
Score = 77.0 bits (188), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR-MSPLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R M P+F ++ L ++F
Sbjct: 216 KMPMWPVHTWLPDAHVQAPT-AGSMILAGVLLKLGAYGFLRFMMPMFPDASAQLMWLVFG 274
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ + + L+ ++QND+K++IAYS+++ + +T GL G+ ++ +++H
Sbjct: 275 LSMVAVVYTSLVALVQNDMKKLIAYSSVAHMAIVTAGLFAFNQQGIEG---ALIIMLSHG 331
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LF G +I + H ++I GGL MP + ++ ++ +G P SGF +
Sbjct: 332 VVSAALFFCVG-VIYDRLHTREIDRYGGLAVNMPAYALFFMLFTMASIGLPGTSGFVGE 389
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 32/268 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+F+ +L S ML + + GT ++ ++ N + + L L
Sbjct: 158 AAFKFFLYTLLGSVLMLIAMIAMIAEAGTTDIPTLLN----YDFPVEMQTWLWLAFFASL 213
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILL 750
+ K+ + P H W+PD + A +++L+ L + ++ ++P+ + L+
Sbjct: 214 AVKMPMWPVHTWLPDAHVQAPTAGSMILAGV----LLKLGAYGFLRFMMPMFPDASAQLM 269
Query: 751 IL----AIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLII 801
L ++ +++ ++ A+ Q + K++IAYSS+AHM GL F+ I+ + ++
Sbjct: 270 WLVFGLSMVAVVYTSLVALVQNDMKKLIAYSSVAHMAIVTAGLFAFNQQGIEGALIIMLS 329
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
+ LF+ + I+ L T E+D + GL P AL M+F
Sbjct: 330 HGVVSAALFFCVGVIYDRL---------------HTREIDRYGGLAVNMPAYALFFMLFT 374
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ G P T GF +F I+E +
Sbjct: 375 MASIGLPGTSGFVGEFLSLLGIYEASSV 402
>gi|383482691|ref|YP_005391605.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia montanensis
str. OSU 85-930]
gi|378935045|gb|AFC73546.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia montanensis
str. OSU 85-930]
Length = 493
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ WID + + +GIDG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWIDKIGLEFHVGIDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFASVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAIYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|334344818|ref|YP_004553370.1| proton-translocating NADH-quinone oxidoreductase chain M
[Sphingobium chlorophenolicum L-1]
gi|334101440|gb|AEG48864.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphingobium chlorophenolicum L-1]
Length = 523
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 259/357 (72%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+ LGIDG++L I LT F+ I I S L I+K++ EYM+AFL + L+IG F A D L
Sbjct: 74 WALGIDGIALLLIALTVFLMPICIGASWLSIEKRVQEYMAAFLFMEVLMIGVFTAQDLYL 133
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYI FEA LIP+++IIG WGG +R YA+ KFFLYTL+GS+LMLI+M+++ + + + +I
Sbjct: 134 FYIMFEAGLIPMYLIIGIWGGVDRIYASYKFFLYTLLGSVLMLIAMMWMVHEAGTT-DIP 192
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LK+G
Sbjct: 193 TLMAYNFDPHIQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGG 252
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS + L+ LS+++++Y SL+A+VQ D+KKLIAYSS+AHM VT+
Sbjct: 253 YGFIRFSLPMFPEASAQLAPLVWGLSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTI 312
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F + ++GA++ M+ H L+S A+F+ +G +Y+++ TR I+ +GG+ +P ++V F
Sbjct: 313 GLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREIARYGGLSINMPKYAVLF 372
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTS F+GEF+ ++ + + + ++ +T +I AAY L L + I +
Sbjct: 373 MLFTMASVGLPGTSNFVGEFLSLMGIYQASSWVALVATTGIILGAAYMLYLYRRICY 429
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F ++ L+ +++
Sbjct: 218 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPLVWG 276
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +T+GL + ++ ++ H
Sbjct: 277 LSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVS 336
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + ++ ++ VG P S F +
Sbjct: 337 GALFLCVG-VIYDRLHTREIARYGGLSINMPKYAVLFMLFTMASVGLPGTSNFVGE 391
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 116/280 (41%), Gaps = 27/280 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + + GT ++ ++ N + + L
Sbjct: 160 ASYKFFLYTLLGSVLMLIAMMWMVHEAGTTDIPTLMAY----NFDPHIQTWLWLAFFASF 215
Query: 691 SFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL 749
+ K+ + P H W+PD + Q + +L K+ + I R + ++
Sbjct: 216 AVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKMGGYGFI-RFSLPMFPEASAQLAPLV 274
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNS 804
L++ +++ ++ A+ Q + K++IAYSS+AHM GL F+ ++ + ++
Sbjct: 275 WGLSMVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGL 334
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
LF + I+ L T E+ + GL P A++ M+F +
Sbjct: 335 VSGALFLCVGVIYDRL---------------HTREIARYGGLSINMPKYAVLFMLFTMAS 379
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
G P T F +F I++ W+ L+ ++GA
Sbjct: 380 VGLPGTSNFVGEFLSLMGIYQASS-WVALVATTGIILGAA 418
>gi|350273923|ref|YP_004885236.1| NADH dehydrogenase subunit M [Rickettsia japonica YH]
gi|348593136|dbj|BAK97097.1| NADH dehydrogenase subunit M [Rickettsia japonica YH]
Length = 493
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 186/380 (48%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL IKK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHIGVDGISIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++I+IG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIMIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIMIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|383757423|ref|YP_005436408.1| NADH-quinone oxidoreductase, L subunit NuoL [Rubrivivax gelatinosus
IL144]
gi|381378092|dbj|BAL94909.1| NADH-quinone oxidoreductase, L subunit NuoL [Rubrivivax gelatinosus
IL144]
Length = 675
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ KP A+ AN+KAFL+NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFWFKKPSAVFANMKAFLVNRVGDFGFILGIGLIVAY 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 AGTLDYAEAFAKAPQLAAMSFPGQDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL+ +L IG+ITA FMG LGIIQNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNFVLVIGSITALFMGFLGIIQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY+V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G P F+GFYSKD
Sbjct: 377 GLRKYMPITWITSLLGSLALIGTPLFAGFYSKDS 410
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 106/192 (55%), Gaps = 13/192 (6%)
Query: 363 QIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLR 416
Q W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R
Sbjct: 220 QDWMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVAR 278
Query: 417 FSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
S P+F + S N ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ + +
Sbjct: 279 MS-PLF-ELSDTALNFVLVIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVAL-GV 335
Query: 477 TKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFS 535
+ S+ A+ +++HA + +F++ G + + I N GG+ +P + ++ S
Sbjct: 336 SAYSV--AVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGS 393
Query: 536 LANCSLPGTSGF 547
LA P +GF
Sbjct: 394 LALIGTPLFAGF 405
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 143/309 (46%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKKPSAVFANMKAFLVNRVGDFGF 186
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GTL+ F + + ++ + + + +G K P
Sbjct: 187 IL-GIGLIVAYAGTLDYAEAFAKAPQLAAMSFPGQDWMLITVICICLFIGAMGKSAQFPL 245
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ +L+I +I +L
Sbjct: 246 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALNF--VLVIGSITALF 303
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 304 MGFLG-IIQNDIKRVVAYSTLSQLGYM---TVALGVSAYSVAVFHLMTHAFFKALLF--- 356
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
L A VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 357 -LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLLGSLALIGTPLFAGFYSKDS 410
Query: 879 IFEKIFETQ 887
I E + +
Sbjct: 411 IIEAVHASH 419
>gi|374319765|ref|YP_005066264.1| NADH dehydrogenase I subunit M [Rickettsia slovaca 13-B]
gi|383751844|ref|YP_005426945.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia slovaca str.
D-CWPP]
gi|360042314|gb|AEV92696.1| NADH dehydrogenase I chain M [Rickettsia slovaca 13-B]
gi|379774858|gb|AFD20214.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia slovaca str.
D-CWPP]
Length = 493
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 186/380 (48%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++I IG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYITIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E L+ + + + + KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYITIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|300703653|ref|YP_003745255.1| NADH-quinone oxidoreductase subunit L [Ralstonia solanacearum
CFBP2957]
gi|421891472|ref|ZP_16322272.1| NADH-quinone oxidoreductase subunit L [Ralstonia solanacearum
K60-1]
gi|299071316|emb|CBJ42634.1| NADH-quinone oxidoreductase subunit L [Ralstonia solanacearum
CFBP2957]
gi|378963145|emb|CCF99020.1| NADH-quinone oxidoreductase subunit L [Ralstonia solanacearum
K60-1]
Length = 687
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 142 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGSLNYADVFAAREKLATIGFPGSDWQMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQ DIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLIIGAITALFMGFLGIIQTDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 382 GLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDS 415
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 235 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 292
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++I + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A+
Sbjct: 293 TALSFVLI-IGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYQVAVF 348
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P +
Sbjct: 349 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFA 408
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 409 GFYSKDSII 417
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+L +F I + +L ++ + + +G K P
Sbjct: 192 VL-GIGLLLAYAGSLNYADVFAAREKLATIGFPGSDWQMLTVACICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLIIGAITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 309 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 362 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDSI 416
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 417 IEAVRESH 424
>gi|162279932|ref|NP_064080.2| nad4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|323435100|ref|YP_004222318.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
gi|346683195|ref|YP_004842124.1| NADH dehydrogenase subunit 4 [Beta macrocarpa]
gi|20429167|dbj|BAB91330.1| NADH dehydrogenase subunit 4 [Beta vulgaris]
gi|148491436|dbj|BAA99473.2| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris]
gi|317905655|emb|CBJ14051.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
gi|319439833|emb|CBJ17542.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
gi|320148081|emb|CBJ20743.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
gi|345500113|emb|CBX24931.1| NADH dehydrogenase subunit 4 [Beta macrocarpa]
gi|384939141|emb|CBL51988.1| NADH dehydrogenase subunit 4 (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 495
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 185/366 (50%), Positives = 261/366 (71%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI+++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENIHFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 43.9 bits (102), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 18/201 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII-- 713
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 714 -ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
I L L T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKLGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIISIK 793
+IAYSS+AHM + + S+
Sbjct: 307 IIAYSSVAHMNFVTIGMFSLN 327
>gi|386333050|ref|YP_006029219.1| transmembrane nadh dehydrogenaseI(chain l) protein [Ralstonia
solanacearum Po82]
gi|334195498|gb|AEG68683.1| transmembrane nadh dehydrogenaseI(chain l) protein [Ralstonia
solanacearum Po82]
Length = 686
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLIIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDS 414
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A+
Sbjct: 292 TALS-FVLIIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYQVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P +
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFA 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYAGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLIIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|83746308|ref|ZP_00943361.1| NADH-quinone oxidoreductase chain L [Ralstonia solanacearum UW551]
gi|207742746|ref|YP_002259138.1| transmembrane nadh dehydrogenaseI(chain l) protein [Ralstonia
solanacearum IPO1609]
gi|83727058|gb|EAP74183.1| NADH-quinone oxidoreductase chain L [Ralstonia solanacearum UW551]
gi|206594140|emb|CAQ61067.1| transmembrane nadh dehydrogenaseI(chain l) protein [Ralstonia
solanacearum IPO1609]
Length = 686
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLIIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDS 414
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A+
Sbjct: 292 TALS-FVLIIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYQVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P +
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFA 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYAGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLIIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|313672290|ref|YP_004050401.1| NADH dehydrogenase subunit m [Calditerrivibrio nitroreducens DSM
19672]
gi|312939046|gb|ADR18238.1| NADH dehydrogenase subunit M [Calditerrivibrio nitroreducens DSM
19672]
Length = 498
Score = 345 bits (886), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 180/379 (47%), Positives = 257/379 (67%), Gaps = 14/379 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI NI Y+LG+DG+S+ + LT F++ I IL S I+K+ E+ + L+L
Sbjct: 62 ERYYWIRSLNIDYYLGVDGISILMVFLTTFLSAIAILGSFTYIQKRQKEFYVSMLVLEAA 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFYIF+EA LIP+++IIG WGG R YAA+KFFLYTL GS+ M++++I
Sbjct: 122 MVGVFCALDFFLFYIFWEAMLIPMYLIIGVWGGQRRIYAAVKFFLYTLAGSVFMMLAIIA 181
Query: 340 LYYISNKSFNILSWHQLSITKIE----------QIWLFITFFIAFAIKIPIWPMHTWLPD 389
LY+ K ++ + I KI QI +F+ FF FAIK+P++P HTWLPD
Sbjct: 182 LYF---KYGSMTGEYTFDILKISAMGAQFPLGFQIIVFLAFFFGFAIKVPMFPFHTWLPD 238
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHVEAPT GSVILA ++LK+G YG LRF LPI P AS F L+ LS+I+IIY L+AM
Sbjct: 239 AHVEAPTAGSVILAGVLLKMGTYGFLRFCLPITPIASIKFVPLVAILSVIAIIYGGLVAM 298
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
VQ D+KKL+AYSS++HMGFVTLGI+ + I+G I+QM +H +I+ A+F+ IG +Y +
Sbjct: 299 VQEDVKKLVAYSSVSHMGFVTLGIYAFNQSGIEGGILQMFNHGIITGALFLLIGLIYERT 358
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TRLI+++GGI +P ++ F+IF++A+ +LP GFIGEF++++ A K L +
Sbjct: 359 HTRLIADYGGIAAKVPVYATVFLIFTMASVALPSMGGFIGEFLVLVGAFKAFPTYAGLAA 418
Query: 570 TALIFSAAYSLCLSKNIIF 588
+I SA Y L + + + F
Sbjct: 419 LGVIVSAVYMLWMYQRVFF 437
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Query: 40 FLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR----MSPLF 94
FL G K FP HTWLPD+ +E PT A ++I A ++ G + R ++P+
Sbjct: 216 FLAFFFGFAIKVPMFPFHTWLPDAHVEAPT-AGSVILAGVLLKMGTYGFLRFCLPITPIA 274
Query: 95 ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVS-- 152
+ L IL + AI + GL+ ++Q D+K+++AYS++S +G++T LG+ A+ S
Sbjct: 275 SIKFVPLVAILSVIAII--YGGLVAMVQEDVKKLVAYSSVSHMGFVT--LGIYAFNQSGI 330
Query: 153 ---IFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
I + H LFL G +I H + I + GG+ +P+ LI ++ V
Sbjct: 331 EGGILQMFNHGIITGALFLLIG-LIYERTHTRLIADYGGIAAKVPVYATVFLIFTMASVA 389
Query: 210 APFFSGF 216
P GF
Sbjct: 390 LPSMGGF 396
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 129/263 (49%), Gaps = 20/263 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSV-LALSLLLIIV- 688
AA+K+F+ + S FM+ I LY G++ + F+++K++ + L +++ +
Sbjct: 160 AAVKFFLYTLAGSVFMMLAIIALYFKYGSMTGEYTFDILKISAMGAQFPLGFQIIVFLAF 219
Query: 689 --GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCL--LPLV-I 743
G + K+ + PFH W+PD + A +++L+ + L + Y L CL P+ I
Sbjct: 220 FFGFAIKVPMFPFHTWLPDAHVEAPTAGSVILA---GVLLKMGTYGFLRFCLPITPIASI 276
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
+ ++ IL++ ++I G + A+ Q + K+++AYSS++HMG + I + S I
Sbjct: 277 KFVPLVAILSVIAIIYGGLVAMVQEDVKKLVAYSSVSHMGFVTLGIYAFNQSGIEGGILQ 336
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
+ G+ I +F ++G +I + +T D + G+ + P A + +IF +
Sbjct: 337 MFNHGI--ITGALFLLIG----LIYERTHTRLIAD----YGGIAAKVPVYATVFLIFTMA 386
Query: 864 LAGFPPTIGFYAKFFIFEKIFET 886
P GF +F + F+
Sbjct: 387 SVALPSMGGFIGEFLVLVGAFKA 409
>gi|421897883|ref|ZP_16328250.1| transmembrane nadh dehydrogenaseI(chain l) protein [Ralstonia
solanacearum MolK2]
gi|206589089|emb|CAQ36051.1| transmembrane nadh dehydrogenaseI(chain l) protein [Ralstonia
solanacearum MolK2]
Length = 686
Score = 345 bits (886), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 AGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLIIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDS 414
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + Q A+
Sbjct: 292 TALS-FVLIIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYQVAVF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P +
Sbjct: 348 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFA 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYAGSLNYADVFAAREKLATIGFPGTDWQMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLIIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|157829059|ref|YP_001495301.1| NADH dehydrogenase subunit M [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933785|ref|YP_001650574.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Iowa]
gi|378721870|ref|YP_005286757.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Colombia]
gi|378723215|ref|YP_005288101.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Arizona]
gi|378724570|ref|YP_005289454.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Hauke]
gi|379015883|ref|YP_005292118.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Brazil]
gi|379018355|ref|YP_005294590.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Hino]
gi|157801540|gb|ABV76793.1| NADH dehydrogenase subunit M [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908872|gb|ABY73168.1| NADH-quinone oxidoreductase chain M [Rickettsia rickettsii str.
Iowa]
gi|376324407|gb|AFB21647.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Brazil]
gi|376326894|gb|AFB24133.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Colombia]
gi|376328239|gb|AFB25477.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Arizona]
gi|376330921|gb|AFB28157.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Hino]
gi|376333585|gb|AFB30818.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Hauke]
Length = 493
Score = 345 bits (886), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 185/380 (48%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPD HV+
Sbjct: 186 SLIYIYS-KMHSFDLTYLFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDTHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ ++ LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I +L++ I
Sbjct: 233 PFHTWLPDTHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 132/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L +F + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYLFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDTHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + +L L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|110225712|ref|YP_665717.1| NADH dehydrogenase subunit 4 [Mesostigma viride]
gi|17222583|gb|AAL36756.1|AF353999_36 NADH dehydrogenase subunit 4 [Mesostigma viride]
Length = 484
Score = 345 bits (886), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 284/429 (66%), Gaps = 16/429 (3%)
Query: 166 LFLSAGSIIINMKHNQDIR--NMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKK 223
LF G+I ++ IR +G + +CIT L+ L VG + + +K
Sbjct: 11 LFPILGAIFLSFIPESKIRWIRLGAFW----FSCITWLVSLFLWVGFQNLTADFQFLQK- 65
Query: 224 IWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIG 282
ID F +F+G+DG+SL+FI LT F+ + +L+S +I Y AFL + L+I
Sbjct: 66 --IDIFPFTFFVGVDGISLFFILLTTFLIPVCLLVSWSNIHHYRKAYFIAFLAMESLLIS 123
Query: 283 AFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLY 341
FC LD +LFYIFFE+ LIP+F+IIG WG R AA +FF+YTL GS+ ML+ +++L+
Sbjct: 124 VFCLLDLLLFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLFGSVFMLLGILFLH 183
Query: 342 Y-ISNKSFNILSWHQLSITKIEQI-WLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+ I F +L ++S K++ I WL FF +FA+K+P+ P+H WLP+AHVEAPT GS
Sbjct: 184 FEIGTTDFLVLQTTEIS-EKVQLICWL--AFFASFAVKVPMVPVHIWLPEAHVEAPTAGS 240
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
V+LA I+LKLG YGLLRFS+ +FP AS YF+ L+ T+S+I+I+Y SL + QID+KK+IA
Sbjct: 241 VLLAGILLKLGTYGLLRFSITLFPMASIYFTPLVYTMSVIAILYTSLTTLRQIDLKKIIA 300
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSS+AHM FVT+G+F I+G+I M+SH L+SSA+F+ +G LY + KTRL+ +GG
Sbjct: 301 YSSVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGLVSSALFLCVGVLYERHKTRLLKYYGG 360
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ +P F++FF+IF+LA S PGTS F+GEF+I++ A + N +L S ++ AAYS
Sbjct: 361 SVHTMPLFAIFFLIFTLAGLSFPGTSSFVGEFLILVGAFQNNISTAILASIGMVLGAAYS 420
Query: 580 LCLSKNIIF 588
+ L ++F
Sbjct: 421 IWLYNRVVF 429
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT S L+ A ++ G + + R S LF +++ + +++
Sbjct: 217 VKVPMVPVHIWLPEAHVEAPTAGSVLL-AGILLKLGTYGLLRFSITLFPMASIYFTPLVY 275
Query: 107 IGAITA-FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFF 162
++ A + L + Q D+K+IIAYS+++ + ++T+GL V SIF +++H
Sbjct: 276 TMSVIAILYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGLV 335
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + ++ GG MP+ I LI L+ + P S F
Sbjct: 336 SSALFLCVG-VLYERHKTRLLKYYGGSVHTMPLFAIFFLIFTLAGLSFPGTSSF 388
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 134/288 (46%), Gaps = 18/288 (6%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + AA ++FI + S FML GI L+ GT
Sbjct: 129 DLLLFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLFGSVFMLLGILFLHFEIGT 188
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+ F V++ I+ V + L + K+ + P H+W+P+ + A ++LL+
Sbjct: 189 TD----FLVLQTTEISEKVQLICWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVLLA 244
Query: 720 -TTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYS 777
KL + ++ R I L P+ I + ++ +++ +++ +++ + Q + K++IAYS
Sbjct: 245 GILLKLGTYGLL-RFSIT-LFPMASIYFTPLVYTMSVIAILYTSLTTLRQIDLKKIIAYS 302
Query: 778 SIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKT 837
S+AHM + + S IF GL + + +F +G +L + +KT
Sbjct: 303 SVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGL--VSSALFLCVG-----VLYER---HKT 352
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
L + G P A+ +IF + FP T F +F I F+
Sbjct: 353 RLLKYYGGSVHTMPLFAIFFLIFTLAGLSFPGTSSFVGEFLILVGAFQ 400
>gi|398803083|ref|ZP_10562193.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Polaromonas sp. CF318]
gi|398097291|gb|EJL87601.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Polaromonas sp. CF318]
Length = 674
Score = 345 bits (886), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNMLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYAEAFAKADELSKLTFPGTGWMLVTVVCICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS I+ IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+II M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMP+T ITSL+G L+L+G P F+GFYSKD
Sbjct: 382 GVRKYMPVTWITSLLGTLALIGTPLFAGFYSKDS 415
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLVTVVCICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLFELSDTALS-FIMVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ A+ +++HA + +F++ IG +NQ I GG+ +P V +I
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQD----IRWMGGVRKYMP---VTWIT 393
Query: 534 FSLANCSLPGTSGFIG 549
L +L GT F G
Sbjct: 394 SLLGTLALIGTPLFAG 409
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 139/308 (45%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF----NVIKLNNINCSVLALSLLLI--IVGLSFKLGISPF 699
+L GI ++ GTL F + KL + ++++ I +G K P
Sbjct: 192 IL-GIGLIAAYAGTLNYAEAFAKADELSKLTFPGTGWMLVTVVCICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L ++++ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFIMVIGAITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L A VII + +N ++ G+ + P + ++ +L G P GFY+K I
Sbjct: 362 LAAGSVIIGMHHN-----QDIRWMGGVRKYMPVTWITSLLGTLALIGTPLFAGFYSKDSI 416
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 417 IEAVHESH 424
>gi|34581180|ref|ZP_00142660.1| NADH dehydrogenase I chain M [Rickettsia sibirica 246]
gi|28262565|gb|EAA26069.1| NADH dehydrogenase I chain M [Rickettsia sibirica 246]
Length = 493
Score = 345 bits (886), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 186/380 (48%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+T+I I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTIICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFAIKIPI P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAIKIPIIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAY+SIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYASIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAY++++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYASIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAIKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAY+SIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYASIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|150406469|ref|YP_001315113.1| NADH dehydrogenase subunit 4 [Chlorokybus atmophyticus]
gi|126507706|gb|ABO15103.1| NADH dehydrogenase subunit 4 [Chlorokybus atmophyticus]
Length = 502
Score = 345 bits (886), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 291/422 (68%), Gaps = 7/422 (1%)
Query: 170 AGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF 229
G+II+ N+ IR + + + IT L LL + + + + W+ +
Sbjct: 29 VGAIILFFIPNEKIRLIRSIA--FTTSLITFLFSLLLWLEFDYSTAKFQFVNNVNWLPFS 86
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALD 288
NI +++G+DG+S++FI LT F+ + IL+ +K L +Y+ AFL+L L+I FC LD
Sbjct: 87 NINFYIGVDGISIFFIILTTFLIPVCILVGWSTVKNYLKQYLIAFLVLETLMIFVFCTLD 146
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKS 347
+LFY+FFE+ LIP+F+IIG WG R AA +FFLYTL GS+ ML++++++Y+ + +
Sbjct: 147 LLLFYLFFESVLIPMFLIIGIWGSRERKIRAAYQFFLYTLFGSVFMLLAILFIYFQTGTT 206
Query: 348 -FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
IL + ++ + QI L++ FF +FA+K+P+ P+H WLP+AHVEAPT GSVILA I+
Sbjct: 207 DLQILYTTEFTVQR--QIILWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIL 264
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LKLG YG LRFS+PIFP+A+ YF+ LI T+S+I+IIY SL + QID+KK+IAYSS+AHM
Sbjct: 265 LKLGSYGFLRFSIPIFPEATLYFTPLIYTMSVIAIIYTSLTTLSQIDLKKIIAYSSVAHM 324
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
FVT+G+F L I+G+++ M+SH L+SSA+F+ +G LY++ KTRLI +GG + +P
Sbjct: 325 NFVTIGLFSLNIQGIEGSLLLMLSHGLVSSALFLCVGALYDRHKTRLIQYYGGCVQTMPL 384
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
FS+FF+IF+L N SLPGTS F+GEF+I++ + + N I L +T ++ AAYSL L +
Sbjct: 385 FSLFFLIFTLGNLSLPGTSSFVGEFLILVGSFQSNTMITTLAATGMVLGAAYSLWLYNRV 444
Query: 587 IF 588
IF
Sbjct: 445 IF 446
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + +++
Sbjct: 234 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGSYGFLRFSIPIFPEATLYFTPLIY 292
Query: 107 IGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
++ A + L + Q D+K+IIAYS+++ + ++T+G L + S+ +++H
Sbjct: 293 TMSVIAIIYTSLTTLSQIDLKKIIAYSSVAHMNFVTIGLFSLNIQGIEGSLLLMLSHGLV 352
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLI---GLLSLVGAPFFSG 215
+ LFL G+ + + + I+ GG + MP+ + LI G LSL G F G
Sbjct: 353 SSALFLCVGA-LYDRHKTRLIQYYGGCVQTMPLFSLFFLIFTLGNLSLPGTSSFVG 407
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 115/265 (43%), Gaps = 24/265 (9%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA ++F+ + S FML I +Y TGT +LQ ++ + L
Sbjct: 176 RAAYQFFLYTLFGSVFMLLAILFIYFQTGTTDLQILYT----TEFTVQRQIILWLAFFAS 231
Query: 690 LSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H+W+P+ + G+ I+ +LL KL + + R I +
Sbjct: 232 FAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILL----KLGSYGFL-RFSIPIFPEATLY 286
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ ++ +++ ++I +++ ++Q + K++IAYSS+AHM + + S+ +
Sbjct: 287 FTPLIYTMSVIAIIYTSLTTLSQIDLKKIIAYSSVAHMNFVTIGLFSLNIQGIEGSLLLM 346
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
GL + + +F +GA +KT + + G Q P +L +IF
Sbjct: 347 LSHGL--VSSALFLCVGAL--------YDRHKTRLIQYYGGCVQTMPLFSLFFLIFTLGN 396
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKI 889
P T F +F I F++ +
Sbjct: 397 LSLPGTSSFVGEFLILVGSFQSNTM 421
>gi|85374148|ref|YP_458210.1| NADH-quinone oxidoreductase subunit M [Erythrobacter litoralis
HTCC2594]
gi|84787231|gb|ABC63413.1| NADH-quinone oxidoreductase chain M [Erythrobacter litoralis
HTCC2594]
Length = 515
Score = 345 bits (886), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 254/357 (71%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y LG+DG+++ I L+ F+ I +L S + I+K++ EYM+A L+ L+IG F A D L
Sbjct: 72 YALGVDGIAMLLIMLSVFLMPICVLASWEAIQKRVGEYMAALLLTEMLMIGVFAAQDLFL 131
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIFFEA LIP++++IG WGG++R YAA KFFLYTL+GS+LML++M ++ + S +I
Sbjct: 132 FYIFFEAGLIPMYLLIGIWGGADRIYAAFKFFLYTLIGSVLMLVAMFWMVNEAGTS-DIP 190
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ Q Q WL++ FF +FA+K+P++P HTWLP AHV+APT GSVILA ++LKLG
Sbjct: 191 TLMQYDFAPEAQTWLWLAFFASFAVKVPMFPFHTWLPAAHVQAPTAGSVILAGVLLKLGG 250
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS F+ L+ LS+I++IY SL+A+VQ D+KKLIAYSS+AHM VT
Sbjct: 251 YGFIRFSLPMFPEASAQFTWLVFALSMIAVIYTSLVALVQEDMKKLIAYSSVAHMAIVTA 310
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
+F ++GA+I M+SH L+S A+F+ +G +Y+++ TR I +GG+ +P +++FF
Sbjct: 311 ALFAFNVQGLEGAMIVMLSHGLVSGALFLCVGIIYDRLHTREIGRYGGLAINMPKYALFF 370
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTSGF+ EF+ + + + + + +T +I A Y L L + ++F
Sbjct: 371 LLFTMASIGLPGTSGFVAEFLSLAGTYQVSSSVTLFLTTGIILGAGYMLYLYRRVVF 427
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K FP HTWLP + ++ PT A ++I A ++ G + R S P+F ++ + ++F
Sbjct: 216 KVPMFPFHTWLPAAHVQAPT-AGSVILAGVLLKLGGYGFIRFSLPMFPEASAQFTWLVFA 274
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K++IAYS+++ + +T L V ++ +++H
Sbjct: 275 LSMIAVIYTSLVALVQEDMKKLIAYSSVAHMAIVTAALFAFNVQGLEGAMIVMLSHGLVS 334
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G II + H ++I GGL MP + L+ ++ +G P SGF ++
Sbjct: 335 GALFLCVG-IIYDRLHTREIGRYGGLAINMPKYALFFLLFTMASIGLPGTSGFVAE 389
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 34/300 (11%)
Query: 589 VLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS 643
+L +M+MI + +L Y+ E L+ + L + I + I+ AA K+F+ ++ S
Sbjct: 114 LLTEMLMIGVFAAQDLFLFYIFFEAGLIPMYLLIGIWGGADRIY---AAFKFFLYTLIGS 170
Query: 644 GFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWV 703
ML + + GT ++ ++ + L + K+ + PFH W+
Sbjct: 171 VLMLVAMFWMVNEAGTSDIPTLMQ----YDFAPEAQTWLWLAFFASFAVKVPMFPFHTWL 226
Query: 704 PDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNV 762
P + Q + +L KL + I R + + ++ L++ ++I ++
Sbjct: 227 PAAHVQAPTAGSVILAGVLLKLGGYGFI-RFSLPMFPEASAQFTWLVFALSMIAVIYTSL 285
Query: 763 SAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
A+ Q + K++IAYSS+AHM L F++ ++ + ++ LF + I+
Sbjct: 286 VALVQEDMKKLIAYSSVAHMAIVTAALFAFNVQGLEGAMIVMLSHGLVSGALFLCVGIIY 345
Query: 818 AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
L T E+ + GL P AL ++F + G P T GF A+F
Sbjct: 346 DRL---------------HTREIGRYGGLAINMPKYALFFLLFTMASIGLPGTSGFVAEF 390
>gi|379712942|ref|YP_005301281.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia philipii str.
364D]
gi|376329587|gb|AFB26824.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia philipii str.
364D]
Length = 493
Score = 345 bits (886), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 185/380 (48%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPD HV+
Sbjct: 186 SLIYIYS-KMHSFDLTYLFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDTHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ ++ LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I +L++ I
Sbjct: 233 PFHTWLPDTHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 77.0 bits (188), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 132/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L +F + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYLFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDTHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + +L L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|91782623|ref|YP_557829.1| NADH dehydrogenase subunit L [Burkholderia xenovorans LB400]
gi|91686577|gb|ABE29777.1| NADH dehydrogenase subunit L [Burkholderia xenovorans LB400]
Length = 692
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ +P AI AN+KAF++NRIG
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRPTAIYANMKAFIVNRIGDFGFLLGIGLLFAF 195
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGDVFAKRTELAALTFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS + IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFVTVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FVTVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 132/303 (43%), Gaps = 20/303 (6%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFTRPTAIYANMKAFIVNRIGDFGF 185
Query: 647 LYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI +L+ G++ +F + + +L ++ + + +G K P H
Sbjct: 186 LLGIGLLFAFAGSMNYGDVFAKRTELAALTFPGTDWGLLTVACICLFIGAMGKSAQFPLH 245
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L + ++ + +
Sbjct: 246 VWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFVTVIGAITALFM 303
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
I Q + KR++AYS+++ +G M +++ S + +F+ F + + L
Sbjct: 304 GFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF----L 356
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA VII + ++ ++ GL + P + +I +L G P GFY+K I
Sbjct: 357 GAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSKDSII 411
Query: 881 EKI 883
+ +
Sbjct: 412 DAV 414
>gi|187929282|ref|YP_001899769.1| NADH dehydrogenase subunit L [Ralstonia pickettii 12J]
gi|187726172|gb|ACD27337.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Ralstonia pickettii 12J]
Length = 686
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 SGSLSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS +L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLIIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMP+T +TSL+G L+L+G PFF+GFYSKD
Sbjct: 381 GLRKYMPVTWLTSLVGSLALIGTPFFAGFYSKDS 414
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLG 410
WH L++ I FI K +P+H WLPD+ +E PT ++I AA M+ G
Sbjct: 225 DWHMLTVACI-------CLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAG 276
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
+ + R S P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T
Sbjct: 277 IFMVARMS-PLFELSDTALS-FVLIIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMT 334
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSV 529
+ L + Q A+ +++HA + +F+ G + + + N GG+ +P +
Sbjct: 335 VA---LGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPVTWL 391
Query: 530 FFIIFSLANCSLPGTSGFIGEFMII 554
++ SLA P +GF + II
Sbjct: 392 TSLVGSLALIGTPFFAGFYSKDSII 416
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L +G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYSGSLSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVLIIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPVTWLTSLVGSLALIGTPFFAGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|316996017|dbj|BAD83480.2| NADH dehydrogenase subunit 4 (mitochondrion) [Nicotiana tabacum]
Length = 495
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 183/366 (50%), Positives = 257/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI ++I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFIMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+FFE+ LIP+FIIIG WG R AA + FLYTL+GS+ ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGIVLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGIVLKLGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G L + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 586 IIFVLGQMIMISGN---NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
I F++ + IMI+ +LL Y+ E + + + ++I + +AA + F+ +L
Sbjct: 121 IAFLICEFIMIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLG 180
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S FML I ++ TGT +LQ I + + L ++ + K+ + P H+W
Sbjct: 181 SVFMLLAILLILFQTGTTDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIW 236
Query: 703 VPDVYQGA----SII---ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIF 755
+P+ + A S+I I L L T L + ++ C P + L+
Sbjct: 237 LPEAHVEAPTAGSVILAGIVLKLGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAI 289
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIK 793
++I +++ + Q + K++IAYSS+AHM L+ + S+
Sbjct: 290 AIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLN 327
>gi|239946835|ref|ZP_04698588.1| NADH-quinone oxidoreductase subunit M [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921111|gb|EER21135.1| NADH-quinone oxidoreductase subunit M [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 493
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 187/388 (48%), Positives = 264/388 (68%), Gaps = 20/388 (5%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGIWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLY---------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTW 386
S+IY+Y YIS ++NI + Q + +W I FIAFA+KIP+ P HTW
Sbjct: 186 SLIYIYSNIHSFDLTYISELTYNIPLFAQ------QILWWAI--FIAFAVKIPMIPFHTW 237
Query: 387 LPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISL 446
LPDAHV+APT GSVILA I+LKLG YG LR LP+FP S F+ +I LS+I IIY SL
Sbjct: 238 LPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLFPSVSQEFAIYVIYLSVIIIIYASL 297
Query: 447 IAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLY 506
+A Q D+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY
Sbjct: 298 VAFAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLY 357
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGV 566
++ T+ I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N
Sbjct: 358 ERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATF 417
Query: 567 LTSTALIFSAAYSLCLSKNIIFVLGQMI 594
+ + +I A Y L L K ++ LG++I
Sbjct: 418 IAALGIILGAVYMLKLYKEVM--LGEII 443
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 12/176 (6%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILF 106
K P HTWLPD+ ++ PT S ++ + G + + PLF + +I +++
Sbjct: 227 VKIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLFPSVSQEFAIYVIY 286
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 287 LSVIIIIYASLVAFAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHG 343
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 344 VISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 129/290 (44%), Gaps = 37/290 (12%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGIWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSNI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLL--LIIVGLSFKLGISPFHMWVPDVYQGASIIIT 715
+ +L I + N + A +L I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLTYISEL----TYNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQAP---- 246
Query: 716 LLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQ 767
T+ + L I+ +L ++ LLPL + + I L++ +I ++ A Q
Sbjct: 247 ----TSGSVILAGILLKLGGYGFLRVLLPLFPSVSQEFAIYVIYLSVIIIIYASLVAFAQ 302
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
+ K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 303 KDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL---- 356
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 ----YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|385203212|ref|ZP_10030082.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. Ch1-1]
gi|385183103|gb|EIF32377.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. Ch1-1]
Length = 683
Score = 345 bits (885), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ +P AI AN+KAF++NRIG
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRPTAIYANMKAFIVNRIGDFGFLLGIGLLFAF 195
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGDVFAKRTELAALTFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS + IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFVTVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FVTVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 132/303 (43%), Gaps = 20/303 (6%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFTRPTAIYANMKAFIVNRIGDFGF 185
Query: 647 LYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI +L+ G++ +F + + +L ++ + + +G K P H
Sbjct: 186 LLGIGLLFAFAGSMNYGDVFAKRTELAALTFPGTDWGLLTVACICLFIGAMGKSAQFPLH 245
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L + ++ + +
Sbjct: 246 VWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFVTVIGAITALFM 303
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
I Q + KR++AYS+++ +G M +++ S + +F+ F + + L
Sbjct: 304 GFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF----L 356
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA VII + ++ ++ GL + P + ++ +L G P GFY+K I
Sbjct: 357 GAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSKDSII 411
Query: 881 EKI 883
+ +
Sbjct: 412 DAV 414
>gi|357967260|ref|YP_004935284.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
gi|357967262|ref|YP_004935285.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
gi|346228154|gb|AEO21071.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
gi|346228156|gb|AEO21072.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
Length = 495
Score = 345 bits (885), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 176/366 (48%), Positives = 262/366 (71%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI++ LG+DG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENIHFSLGLDGISLFFVILTTFLIPICILVGWSAMRSSGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
F LD +LFY+ FE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML+ +++++
Sbjct: 134 FSMLDLLLFYVLFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGILFIFL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + Q++L+++FF +FA+K+P+ P+H WLP+AHVEAPT GSV
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQLFLWLSFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVF 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ +F+ I +LS ++IIY SL + Q+D+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPLFPEATLFFTPFIYSLSALAIIYTSLTTLRQVDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I G+II M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGLFSLNIQGIGGSIIPMLSHGLVSSALFLCVGLLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS+ F+ F+LAN SLPGTS FIGEF+I++ A + N + L + ++ AAYSL
Sbjct: 372 STMPNFSLIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAIGMVLGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRLV 437
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT S + A ++ G + R S PLF + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPTAGSVFL-AGILLKLGTYGFLRFSIPLFPEATLFFTPFIYS 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 286 LSALAIIYTSLTTLRQVDLKKIIAYSSVAHMNFVTIGLFSLNIQGIGGSIIPMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-LLYDRHKTRLVRYYGGLVSTMP 375
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 139/308 (45%), Gaps = 19/308 (6%)
Query: 586 IIFVLGQMIMI---SGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
I F++ + +MI S +LL Y+ E + + + ++I + +AA ++F+ +L
Sbjct: 121 IAFLICEFLMIAVFSMLDLLLFYVLFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLG 180
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S FML GI ++ TGT +LQ I + + L LS + K+ + P H+W
Sbjct: 181 SVFMLLGILFIFLQTGTTDLQ-ILLTTEFSERRQLFLWLSFF---ASFAVKVPMVPVHIW 236
Query: 703 VPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+P+ + A ++ L+ KL + + R I + + + L+ ++I +
Sbjct: 237 LPEAHVEAPTAGSVFLAGILLKLGTYGFL-RFSIPLFPEATLFFTPFIYSLSALAIIYTS 295
Query: 762 VSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILG 821
++ + Q + K++IAYSS+AHM + + S+ I GL + + +F +G
Sbjct: 296 LTTLRQVDLKKIIAYSSVAHMNFVTIGLFSLNIQGIGGSIIPMLSHGL--VSSALFLCVG 353
Query: 822 AFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFE 881
LL + +KT + + GL P +LI + F + P T F +F I
Sbjct: 354 ------LLYDR--HKTRLVRYYGGLVSTMPNFSLIFLFFTLANMSLPGTSSFIGEFLILV 405
Query: 882 KIFETQKI 889
F+ +
Sbjct: 406 GAFQRNSL 413
>gi|329907893|ref|ZP_08274719.1| NADH-ubiquinone oxidoreductase chain L [Oxalobacteraceae bacterium
IMCC9480]
gi|327546875|gb|EGF31793.1| NADH-ubiquinone oxidoreductase chain L [Oxalobacteraceae bacterium
IMCC9480]
Length = 677
Score = 345 bits (885), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF+Y KP AI AN+KAFL+NR
Sbjct: 132 MSNNFLQLFFGWEAVGLVSYLLIGFYYTKPTAIAANMKAFLVNRVGDFGFILGIGLLMAY 191
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 192 AGSMNYQEVFAQKEALSTLTLPGTSWLLITTACVCLFIGAMGKSAQFPLHVWLPDSMEGP 251
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+ ALS IL IGAITA FMG LG+IQNDIKR
Sbjct: 252 TPISALIHAATMVTAGIFMVARMSPLFELSDAALSFILVIGAITALFMGFLGMIQNDIKR 311
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M H+QDIRNMG
Sbjct: 312 VVAYSTLSQLGYMTVALGCSAYSVAVFHLMTHAFFKALLFLGAGSVIVGMHHDQDIRNMG 371
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 372 GLRKYMPITWITSLVGSLALIGTPLFSGFYSKDS 405
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 17/206 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 217 WLLITTACVCLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 275
Query: 419 LPIFP--DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
P+F DA+ F I+ + I+ +++ + M+Q DIK+++AYS+++ +G++T+ L
Sbjct: 276 -PLFELSDAALSF---ILVIGAITALFMGFLGMIQNDIKRVVAYSTLSQLGYMTVA---L 328
Query: 477 TKISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFS 535
+ A+ +++HA + +F+ G + M + I N GG+ +P + ++ S
Sbjct: 329 GCSAYSVAVFHLMTHAFFKALLFLGAGSVIVGMHHDQDIRNMGGLRKYMPITWITSLVGS 388
Query: 536 LANCSLPGTSGFIGEFMIILSAVKFN 561
LA P SGF + II + N
Sbjct: 389 LALIGTPLFSGFYSKDSIIEAVAATN 414
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 144/309 (46%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 122 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYYTKPTAIAANMKAFLVNRVGDFGF 181
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L G++ Q +F + + L + ++ + + + +G K P
Sbjct: 182 IL-GIGLLMAYAGSMNYQEVFAQKEALSTLTLPGTSWLLITTACVCLFIGAMGKSAQFPL 240
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ L L IL+I AI +L
Sbjct: 241 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDAALSFILVIGAITALF 298
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 299 MGFLGMI-QNDIKRVVAYSTLSQLGYM---TVALGCSAYSVAVFHLMTHAFFKALLF--- 351
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 352 -LGAGSVIVGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPLFSGFYSKDS 405
Query: 879 IFEKIFETQ 887
I E + T
Sbjct: 406 IIEAVAATN 414
>gi|398835063|ref|ZP_10592448.1| proton-translocating NADH-quinone oxidoreductase, chain N
[Herbaspirillum sp. YR522]
gi|398218565|gb|EJN05069.1| proton-translocating NADH-quinone oxidoreductase, chain N
[Herbaspirillum sp. YR522]
Length = 501
Score = 345 bits (885), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/314 (52%), Positives = 228/314 (72%), Gaps = 1/314 (0%)
Query: 590 LGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYG 649
LGQM+MISGN+ LSIYLGLELMSL+L L+A +++N+ ++EA +KYFILG L+SGF+LYG
Sbjct: 120 LGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDNVAATEAGMKYFILGALASGFLLYG 179
Query: 650 ISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQG 709
IS+LYG TG+LEL +F I ++ +VL ++ ++ GL FKLG PFHMWVPDVYQG
Sbjct: 180 ISMLYGATGSLELNEVFRAIVSGTVDRTVLVFGIVFVVAGLGFKLGTVPFHMWVPDVYQG 239
Query: 710 ASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYN 769
+ +TLLL PKL+ F I +RLL++ +LPL + WQ++L+++A+ S+I+GNV+AI Q N
Sbjct: 240 SPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVEWQQMLMVMAVLSIILGNVTAIAQSN 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
KRM+AYS+I+HMG ML +++ N N+ + LFY +TY+ LG FGVIILL
Sbjct: 300 LKRMLAYSTISHMGFMLLGLLAGVVDGNLFSAVNAYSAALFYGVTYVLTTLGTFGVIILL 359
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ + D L+ F GL+QR+PW A +MMI MFSLAG PP +GFYAK + + + T +I
Sbjct: 360 -SRAGFEADTLEDFKGLNQRSPWFAAVMMILMFSLAGLPPLVGFYAKLSVLQAVLGTGQI 418
Query: 890 WLLLLIIMCSLIGA 903
WL +L ++ SLIGA
Sbjct: 419 WLAVLAVVFSLIGA 432
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAAT-MVTAGI---FMITRMSPL------FELSN 98
K P H W+PD +G PTP + L+ AA + T I ++ M PL +
Sbjct: 223 KLGTVPFHMWVPDVYQGSPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVEWQQMLMVM 282
Query: 99 TALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-----------GVS 147
LSIIL G +TA I Q+++KR++AYST+S +G+M +GL V+
Sbjct: 283 AVLSIIL--GNVTA-------IAQSNLKRMLAYSTISHMGFMLLGLLAGVVDGNLFSAVN 333
Query: 148 AYTVSIFHLMTHAF-----FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLI 202
AY+ ++F+ +T+ F ++ LS + + GL + P +I
Sbjct: 334 AYSAALFYGVTYVLTTLGTFGVIILLSRAGF-----EADTLEDFKGLNQRSPWFAAVMMI 388
Query: 203 GLLSLVGAPFFSGFYSK 219
+ SL G P GFY+K
Sbjct: 389 LMFSLAGLPPLVGFYAK 405
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 125/263 (47%), Gaps = 40/263 (15%)
Query: 318 AAIKFFLYTLMGS--LLMLISMIYLYYIS---NKSFNILSWHQLSITKIEQIWLF-ITFF 371
A +K+F+ + S LL ISM+Y S N+ F + +S T + +F I F
Sbjct: 161 AGMKYFILGALASGFLLYGISMLYGATGSLELNEVFRAI----VSGTVDRTVLVFGIVFV 216
Query: 372 IA-FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG-----LLRFSLPIFPDA 425
+A K+ P H W+PD + +PT +++L A KL + L+ LP+
Sbjct: 217 VAGLGFKLGTVPFHMWVPDVYQGSPTPVTLLLGAAP-KLATFAITFRLLVEGMLPL---- 271
Query: 426 SYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAI 485
+ + +++ ++++SII ++ A+ Q ++K+++AYS+I+HMGF+ LG L + G +
Sbjct: 272 AVEWQQMLMVMAVLSIILGNVTAIAQSNLKRMLAYSTISHMGFMLLG---LLAGVVDGNL 328
Query: 486 IQMISHALISSAMFISIGFLYNQMKT--------------RLISNFGGIINVIPHFSVFF 531
++ S+A+F + ++ + T + +F G+ P F+
Sbjct: 329 FSAVNA--YSAALFYGVTYVLTTLGTFGVIILLSRAGFEADTLEDFKGLNQRSPWFAAVM 386
Query: 532 IIFSLANCSLPGTSGFIGEFMII 554
+I + LP GF + ++
Sbjct: 387 MILMFSLAGLPPLVGFYAKLSVL 409
>gi|365093694|ref|ZP_09330755.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Acidovorax sp. NO-1]
gi|363414178|gb|EHL21332.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Acidovorax sp. NO-1]
Length = 681
Score = 345 bits (885), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYGEVFAKTGELGGLAFPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL+ IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLA 400
Query: 538 NCSLPGTSGFIGEFMIILSAVKFN 561
P SGF + II AV F+
Sbjct: 401 LIGTPLFSGFYSKDSII-EAVHFS 423
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 147/309 (47%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GTL +F + + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYAGTLNYGEVFAKTGELGGLAFPGTDWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALNF--ILVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Query: 879 IFEKIFETQ 887
I E + +Q
Sbjct: 416 IIEAVHFSQ 424
>gi|406976666|gb|EKD99045.1| hypothetical protein ACD_23C00158G0001, partial [uncultured
bacterium]
Length = 678
Score = 345 bits (885), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTLNYGEVFGKATELGGLAFPGTDWLLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL+ IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WLLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLA 400
Query: 538 NCSLPGTSGFIGEFMIILSAVKFN 561
P SGF + II AV F+
Sbjct: 401 LIGTPLFSGFYSKDSII-EAVHFS 423
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 146/305 (47%), Gaps = 24/305 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL +F + + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYTGTLNYGEVFGKATELGGLAFPGTDWLLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALNF--ILVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Query: 879 IFEKI 883
I E +
Sbjct: 416 IIEAV 420
>gi|379019670|ref|YP_005295904.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Hlp#2]
gi|376332250|gb|AFB29484.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii
str. Hlp#2]
Length = 493
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 185/380 (48%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYSWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPD HV+
Sbjct: 186 SLIYIYS-KMHSFDLTYLFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDTHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ ++ LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I +L++ I
Sbjct: 233 PFHTWLPDTHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 132/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L +F + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYLFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDTHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + +L L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|171058196|ref|YP_001790545.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Leptothrix cholodnii SP-6]
gi|170775641|gb|ACB33780.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Leptothrix cholodnii SP-6]
Length = 666
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 135 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIFANMKAFLVNRVGDFGFILGIGLIVAY 194
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 195 AGTLSYAEAFAKAPELAKLVFPGTEWMLITVTCICLFIGAMGKSAQFPLHVWLPDSMEGP 254
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL+ IL IGAIT FMG LGIIQNDIKR
Sbjct: 255 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNFILIIGAITGLFMGFLGIIQNDIKR 314
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMT+ LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 315 VVAYSTLSQLGYMTMALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 374
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 375 GLRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 408
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 101/190 (53%), Gaps = 13/190 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 220 WMLITVTCICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 278
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 279 -PLF-ELSDTALNFILIIGAITGLFMGFLGIIQNDIKRVVAYSTLSQLGYMTMA---LGA 333
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + + I N GG+ +P + ++ SLA
Sbjct: 334 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGSLA 393
Query: 538 NCSLPGTSGF 547
P SGF
Sbjct: 394 LIGTPLFSGF 403
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 147/312 (47%), Gaps = 30/312 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI + IF++ +K F++ +
Sbjct: 125 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIFAN---MKAFLVNRVGD 181
Query: 644 -GFMLYGISILYGITGTLELQSIF----NVIKL--NNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI ++ GTL F + KL ++ ++ + + +G K
Sbjct: 182 FGFIL-GIGLIVAYAGTLSYAEAFAKAPELAKLVFPGTEWMLITVTCICLFIGAMGKSAQ 240
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIF 755
P H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI
Sbjct: 241 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALNF--ILIIGAIT 298
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITY 815
L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 299 GLFMGFL-GIIQNDIKRVVAYSTLSQLGYM---TMALGASAYSVAVFHLMTHAFFKALLF 354
Query: 816 IFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYA 875
LGA VII + ++ ++ GL + P + ++ +L G P GFY+
Sbjct: 355 ----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLLGSLALIGTPLFSGFYS 405
Query: 876 KFFIFEKIFETQ 887
K I E + +
Sbjct: 406 KDSIIEALHASH 417
>gi|374092090|gb|AEY83709.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Nardia
scalaris]
Length = 430
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 181/367 (49%), Positives = 256/367 (69%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I L+I
Sbjct: 24 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFIRESLLIAV 83
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLY- 341
C+ D ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML+++++++
Sbjct: 84 SCSPDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFS 143
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 144 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 201
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG LRFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 202 LAGILSKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 261
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH +SSA +G LY++ KTR++ +GG++
Sbjct: 262 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSAPLSCVGALYDRHKTRIVKYYGGLV 321
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 322 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 381
Query: 582 LSKNIIF 588
L ++F
Sbjct: 382 LYNRVVF 388
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A + G + R S P+F + + ++
Sbjct: 177 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILSKLGTYGFLRFSIPMFPEATLYFTPFIYA 235
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 236 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVS 295
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ G+ + + + ++ GGL MPI
Sbjct: 296 SAPLSCVGA-LYDRHKTRIVKYYGGLVSTMPI 326
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 12/197 (6%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 88 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFSQTGT 147
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ ++ + L + S K+ + P H+W+P+ + A S+I+
Sbjct: 148 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 203
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
+LS KL + + R I + + + L++ ++I +++ I Q + K++IA
Sbjct: 204 GILS---KLGTYGFL-RFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIA 259
Query: 776 YSSIAHMGLMLFSIISI 792
YSS+AHM + + S+
Sbjct: 260 YSSVAHMNFVTIGMFSL 276
>gi|427401581|ref|ZP_18892653.1| proton-translocating NADH-quinone oxidoreductase, chain L [Massilia
timonae CCUG 45783]
gi|425719690|gb|EKU82622.1| proton-translocating NADH-quinone oxidoreductase, chain L [Massilia
timonae CCUG 45783]
Length = 704
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/274 (64%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLVNRVGDFGFILGIGLLLAA 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 SGSMNYTEVFAQADQLATMTVPGTDWPLLTAACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+ ALS I+ IG+ITA FMG LGIIQNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVSRMSPLFELSDGALSFIIVIGSITALFMGFLGIIQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY+V+ FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGVSAYSVAAFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G P FSGFYSKD
Sbjct: 381 GLRKYMPITWITSLIGSLALIGTPLFSGFYSKDS 414
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 12/191 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 291
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
+ F II + I+ +++ + ++Q DIK+++AYS+++ +G++T+ + ++ S+ A
Sbjct: 292 GALSF---IIVIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVAL-GVSAYSV--A 345
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+++HA + +F+ G + + + N GG+ +P + +I SLA P
Sbjct: 346 AFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPL 405
Query: 544 TSGFIGEFMII 554
SGF + II
Sbjct: 406 FSGFYSKDSII 416
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 131 LFTFAMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANMKAFLVNRVGD 187
Query: 644 -GFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L +G++ +F + + + +L + + + +G K
Sbjct: 188 FGFIL-GIGLLLAASGSMNYTEVFAQADQLATMTVPGTDWPLLTAACICLFIGAMGKSAQ 246
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L ++++ +
Sbjct: 247 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDGALSFIIVIGSIT 304
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S ++ F+ F + +
Sbjct: 305 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGVSAYSVAAFHLMTHAFFKALLF- 360
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 361 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPLFSGFYSK 412
Query: 877 FFIFEKIFETQ 887
I E + +
Sbjct: 413 DSIIEAVHASN 423
>gi|393771624|ref|ZP_10360093.1| NADH dehydrogenase I subunit M [Novosphingobium sp. Rr 2-17]
gi|392722876|gb|EIZ80272.1| NADH dehydrogenase I subunit M [Novosphingobium sp. Rr 2-17]
Length = 515
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 261/357 (73%), Gaps = 2/357 (0%)
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
Y +GIDG++L I L+ F+ I I S + +++++ EYM+AFL++ L+IG F A D L
Sbjct: 72 YKVGIDGIALLLIELSVFLMPICIGASWNSVQQRVGEYMAAFLLVETLMIGVFAAQDLYL 131
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FY+ FEA LIP+++IIG WGG++R YA+ KFFLYTL+GS+LML++M+++ + + S +I
Sbjct: 132 FYMLFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLVAMLWMVHTAGTS-DIP 190
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
+ + Q WL++ FF +FA+K+P+WP+HTWLP AHV+APT GSVILA ++LK+G
Sbjct: 191 TLMTYNFDPKAQTWLWLAFFASFAVKMPMWPVHTWLPAAHVQAPTAGSVILAGVLLKMGG 250
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +RFSLP+FP+AS YF+ L+ LS+ +++ SLIA+VQ D+KKLIAYSS+AHM VT+
Sbjct: 251 YGFIRFSLPMFPEASAYFAPLVWGLSMAAVVITSLIALVQDDMKKLIAYSSVAHMAIVTI 310
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFF 531
G+F ++G+++ M+SH ++S A+F+ +G +Y+++ TR IS +GG+ +P +++FF
Sbjct: 311 GLFAFNVQGLEGSMMVMLSHGVVSGALFLCVGIIYDRLHTREISRYGGLAINMPRYALFF 370
Query: 532 IIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++F++A+ LPGTSGF+GEF+ + + + ++ +T +I AAY L L + ++F
Sbjct: 371 MLFTMASIGLPGTSGFVGEFLSLGGIYQISTWAALICTTGIILGAAYMLYLYRRVVF 427
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLP + ++ PT A ++I A ++ G + R S P+F ++ + +++
Sbjct: 216 KMPMWPVHTWLPAAHVQAPT-AGSVILAGVLLKMGGYGFIRFSLPMFPEASAYFAPLVWG 274
Query: 108 GAITAFFM-GLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + L+ ++Q+D+K++IAYS+++ + +T+GL V S+ +++H
Sbjct: 275 LSMAAVVITSLIALVQDDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMMVMLSHGVVS 334
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G II + H ++I GGL MP + ++ ++ +G P SGF +
Sbjct: 335 GALFLCVG-IIYDRLHTREISRYGGLAINMPRYALFFMLFTMASIGLPGTSGFVGE 389
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 138/328 (42%), Gaps = 35/328 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+L + +MI + +L Y+ E L+ + L + I + I++S K+F+ +L
Sbjct: 113 FLLVETLMIGVFAAQDLYLFYMLFEAGLIPMYLIIGIWGGADRIYAS---YKFFLYTLLG 169
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + GT ++ ++ N + L + K+ + P H W
Sbjct: 170 SVLMLVAMLWMVHTAGTSDIPTLMT----YNFDPKAQTWLWLAFFASFAVKMPMWPVHTW 225
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+P + Q + +L K+ + I R + + ++ L++ +++I +
Sbjct: 226 LPAAHVQAPTAGSVILAGVLLKMGGYGFI-RFSLPMFPEASAYFAPLVWGLSMAAVVITS 284
Query: 762 VSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q + K++IAYSS+AHM GL F++ ++ S ++ LF + I
Sbjct: 285 LIALVQDDMKKLIAYSSVAHMAIVTIGLFAFNVQGLEGSMMVMLSHGVVSGALFLCVGII 344
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+ + GL P AL M+F + G P T GF +
Sbjct: 345 YDRL---------------HTREISRYGGLAINMPRYALFFMLFTMASIGLPGTSGFVGE 389
Query: 877 FFIFEKIFETQKIWLLLLIIMCSLIGAK 904
F I++ W L+ ++GA
Sbjct: 390 FLSLGGIYQIST-WAALICTTGIILGAA 416
>gi|218673582|ref|ZP_03523251.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli
GR56]
Length = 471
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 249/359 (69%), Gaps = 7/359 (1%)
Query: 197 CITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
CI L+G + A F+ + + W+ I Y LG+DG+S F+ LTA + +
Sbjct: 24 CIAMLVGFDTTTHAMQFT------ETRPWVPALGITYTLGVDGISALFVFLTALLGSTCV 77
Query: 257 LIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L S + I +K+ E+M + L + L++G FCALD LFY+F+EA LIP+++IIG WGG R
Sbjct: 78 LASWVAIDRKVKEFMVSLLAMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGDGR 137
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YAA KFFLYTL GS+L L+ +I LY+ ++FNIL+ + Q WLF F +AFA
Sbjct: 138 VYAAFKFFLYTLAGSVLFLVGVIVLYFNGGETFNILALTAQDLPFRVQSWLFFAFLVAFA 197
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+ P+HTWLPDAHV+APT GS+ILA ++LK+G YG LRFSLP+ P+AS Y+S L+++
Sbjct: 198 VKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLS 257
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS ++I+Y L+A+ Q D+KKL+AYSSI+HMGFVT+GIF L ++G I+QM +H + +
Sbjct: 258 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTT 317
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
A+F+ +G +Y + TR I+++GG++ P ++ F +F L++ +LPGT+ F+GE +++
Sbjct: 318 GALFLFVGLIYERTHTRSIADYGGLMKTAPVYTTFLALFILSSMALPGTNSFVGELLVL 376
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 199 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLS 257
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 258 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTT 317
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 318 GALFLFVG-LIYERTHTRSIADYGGLMKTAPV 348
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G FN++ L + S L +V
Sbjct: 140 AAFKFFLYTLAGSVLFLVGVIVLYFNGG-----ETFNILALTAQDLPFRVQSWLFFAFLV 194
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 195 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASVYYST 253
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 254 LMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFAL 298
>gi|187931000|ref|YP_001890984.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711909|gb|ACD30206.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 529
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 182/457 (39%), Positives = 283/457 (61%), Gaps = 39/457 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYSSSAMQFQESVKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL------ 340
D +L+Y+F+EA LIP + IG WGG +++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 341 ---YYISNKSF----NILSWHQLSITKIEQI-------WL-FITFFIAFAIKIPIWPMHT 385
+++ N+ N ++W S I+ + WL F FF+AFA+KIP+WP H+
Sbjct: 198 SPTHFLVNQDTYSIQNFIAWATQSQGFIDSVKFTLTAQWLVFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P+ + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F+ FF++F +AN LPGTSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFFLLFCMANVGLPGTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
MI+ + +++ I ++ L+ + Y+L + K + F
Sbjct: 438 MILQAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF 474
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFATFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PGTSGFVGE 436
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 30/210 (14%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPEVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIK-------TSHNN 798
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K T+H
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPVLGTTHAQ 364
Query: 799 LIIFNSCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCAL 855
L + +F +I + F+ G F G + L + T E+ F G+ + P A
Sbjct: 365 L----ALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAT 415
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
++F + G P T GF +F I + +F+
Sbjct: 416 FFLLFCMANVGLPGTSGFVGEFMILQAVFQ 445
>gi|241763299|ref|ZP_04761356.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Acidovorax delafieldii 2AN]
gi|241367574|gb|EER61861.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Acidovorax delafieldii 2AN]
Length = 676
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW+++P AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFNRPSAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYAEVFGKTAQLGGMAFPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL+ IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLA 400
Query: 538 NCSLPGTSGFIGEFMIILSAVKFN 561
P SGF + II AV F+
Sbjct: 401 LIGTPLFSGFYSKDSII-EAVHFS 423
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 145/305 (47%), Gaps = 24/305 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNRPSAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GTL +F + + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYAGTLNYAEVFGKTAQLGGMAFPGTDWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALNF--ILVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Query: 879 IFEKI 883
I E +
Sbjct: 416 IIEAV 420
>gi|112253904|ref|YP_717159.1| NADH dehydrogenase subunit 4 [Brassica napus]
gi|37591106|dbj|BAC98908.1| NADH dehydrogenase subunit 4 [Brassica napus]
Length = 495
Score = 344 bits (883), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 255/366 (69%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GSL ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFAFFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LK G YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 18/199 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ I + + L ++ + K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFFAF---FAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLS--TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+LL T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKFGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIIS 791
+IAYSS+AHM L+ + S
Sbjct: 307 IIAYSSVAHMNLVTIGMFS 325
>gi|218462136|ref|ZP_03502227.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli Kim
5]
Length = 463
Score = 344 bits (883), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 249/359 (69%), Gaps = 7/359 (1%)
Query: 197 CITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
CI L+G + A F+ + + W+ I Y LGIDG+S F+ LTA + +
Sbjct: 16 CIAMLVGFDTTTHAMQFT------ETRPWVPALGITYALGIDGISALFVFLTALLGSTCV 69
Query: 257 LIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L S + I +K+ E+M + L + L++G FCALD LFY+F+EA LIP+++IIG WGG R
Sbjct: 70 LASWVAIDRKVKEFMVSLLAMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGDGR 129
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YAA KFFLYTL GS+L L+ +I LY+ ++F+IL+ + Q WLF F +AFA
Sbjct: 130 VYAAFKFFLYTLAGSVLFLVGVIVLYFSGGETFDILALTAQDLPFRVQSWLFFAFLVAFA 189
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+ P+HTWLPDAHV+APT GS+ILA ++LK+G YG LRFSLP+ P+AS Y+S L+++
Sbjct: 190 VKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLS 249
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS ++I+Y L+A+ Q D+KKL+AYSSI+HMGFVT+GIF L ++G I+QM +H + +
Sbjct: 250 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTT 309
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
A+F+ +G +Y + TR I+++GG++ P ++ F +F L++ +LPGT+ F+GE +++
Sbjct: 310 GALFLFVGLIYERTHTRSIADYGGLMKAAPVYTAFLALFILSSMALPGTNSFVGELLVL 368
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 191 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLS 249
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 250 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTT 309
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 310 GALFLFVG-LIYERTHTRSIADYGGLMKAAPV 340
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 19/257 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G F+++ L + S L +V
Sbjct: 132 AAFKFFLYTLAGSVLFLVGVIVLYFSGG-----ETFDILALTAQDLPFRVQSWLFFAFLV 186
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 187 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASVYYST 245
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++ I +
Sbjct: 246 LMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNH 305
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
G+ ++F L I + +T + D + GL + P + +F+ S
Sbjct: 306 GVTTGALFLFVGL------IYERTHTRSIAD----YGGLMKAAPVYTAFLALFILSSMAL 355
Query: 868 PPTIGFYAKFFIFEKIF 884
P T F + + F
Sbjct: 356 PGTNSFVGELLVLSGGF 372
>gi|337280280|ref|YP_004619752.1| NADH:ubiquinone oxidoreductase subunit 12 or 5, chain L
[Ramlibacter tataouinensis TTB310]
gi|334731357|gb|AEG93733.1| Candidate NADH:ubiquinone oxidoreductase subunit 12 or 5, chain L
[Ramlibacter tataouinensis TTB310]
Length = 685
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY+KP AI AN+KAFL+NR
Sbjct: 142 MSNNFLQLFFGWEAVGLVSYLLIGFWYNKPSAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGSLAYGEVFAKSADLAKLGFPGTEWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPL+ELS+TALS IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLYELSDTALSFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+I+ + HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIMGVHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT+L+G L+L+G P FSGFYSKD
Sbjct: 382 GLRKYMPITWITALLGSLALIGTPLFSGFYSKDS 415
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 108/208 (51%), Gaps = 14/208 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLYELSDTALS-FILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F++ G + + I GG+ +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLAAGSVIMGVHHNQDIRWMGGLRKYMPITWITALLGSLA 400
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFCIG 565
P SGF + II AV F+ G
Sbjct: 401 LIGTPLFSGFYSKDSII-EAVHFSRLPG 427
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 144/309 (46%), Gaps = 32/309 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFAMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYNKPSAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF----NVIKLNNINCSVLALSLLLI--IVGLSFKLGISPF 699
+L GI ++ TG+L +F ++ KL + ++++ I +G K P
Sbjct: 192 IL-GIGLIAAYTGSLAYGEVFAKSADLAKLGFPGTEWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H+W+PD +G + I L+ + T + ++ R+ L L IL+I AI
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLYELSDTALSF------ILVIGAI 304
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F +
Sbjct: 305 TALFMGFLG-IIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALL 360
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ L A VI+ + +N ++ GL + P + ++ +L G P GFY
Sbjct: 361 F----LAAGSVIMGVHHN-----QDIRWMGGLRKYMPITWITALLGSLALIGTPLFSGFY 411
Query: 875 AKFFIFEKI 883
+K I E +
Sbjct: 412 SKDSIIEAV 420
>gi|383501219|ref|YP_005414578.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia australis str.
Cutlack]
gi|378932230|gb|AFC70735.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia australis str.
Cutlack]
Length = 493
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/380 (48%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ +L+ I Q L+ FIAFA+KIP+ P+HTWLPDAHV+
Sbjct: 186 SLIYIYS-KIHSFDLTYMPELTDNIPLFAQQILWWAIFIAFAVKIPMIPVHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLLPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IVKYGGVASKMPMLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVAATFVAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K I+ LG++
Sbjct: 425 LGAVYMLKLYKEIM--LGEI 442
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P+HTWLPD+ ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPVHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLLPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIVKYGGVASKMPMLATFFMIAMLGSVGLPGTSGF 398
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L + + +NI + I + + K+ + P H W+PD + A
Sbjct: 195 HSFDLTYMPELT--DNIPLFAQQILWWAIFIAFAVKIPMIPVHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL+ + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLLPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIVKYGGVASKMPMLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|238028132|ref|YP_002912363.1| NADH:ubiquinone oxidoreductase subunit L [Burkholderia glumae BGR1]
gi|237877326|gb|ACR29659.1| NADH dehydrogenase subunit L [Burkholderia glumae BGR1]
Length = 681
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAF++NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFIVNRVGDFGFLLGIGLLLAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKSTALAAMHFPGTNWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAG+FM+TRMSPLFELS+TALS I IGAITA FMG LG+IQNDIKR
Sbjct: 256 TPISALIHAATMVTAGVFMVTRMSPLFELSDTALSFITVIGAITALFMGFLGVIQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGVFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F++ G + + I N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 138/308 (44%), Gaps = 30/308 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFIVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + N +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAYAGSMNYGEVFAKSTALAAMHFPGTNWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK-ILLILAIF 755
P H+W+PD +G + I L+ + T + ++ R+ L L I +I AI
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGVFMVTRM--SPLFELSDTALSFITVIGAIT 299
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITY 815
+L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGVI-QNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF 355
Query: 816 IFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYA 875
L A VII + ++ ++ GL + P + ++ +L G P GFY+
Sbjct: 356 ----LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYS 406
Query: 876 KFFIFEKI 883
K I + +
Sbjct: 407 KDSIIDAV 414
>gi|91789105|ref|YP_550057.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Polaromonas sp. JS666]
gi|91698330|gb|ABE45159.1| NADH dehydrogenase subunit L [Polaromonas sp. JS666]
Length = 678
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW++KP AI AN+KAF++NR
Sbjct: 142 MSNNMLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFIVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYAEAFAKADELSKLAFPGTGWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS I+ IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+II M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P F+GFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPLFAGFYSKDS 415
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 21/201 (10%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLFELSDTALS-FIMVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ A+ +++HA + +F++ IG +NQ I GG+ +P + ++
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQD----IRWMGGVRKYMPITWITSLL 396
Query: 534 FSLANCSLPGTSGFIGEFMII 554
SLA P +GF + II
Sbjct: 397 GSLALIGTPLFAGFYSKDSII 417
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI N + A +K FI+ + GF
Sbjct: 132 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFIVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF-NVIKLNNINCSVLALSLLLII-----VGLSFKLGISPF 699
+L GI ++ GTL F +L+ + L+ +I +G K P
Sbjct: 192 IL-GIGLIAAYAGTLNYAEAFAKADELSKLAFPGTGWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L ++++ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFIMVIGAITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L A VII + +N ++ G+ + P + ++ +L G P GFY+K I
Sbjct: 362 LAAGSVIIGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFAGFYSKDSI 416
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 417 IEAVHESH 424
>gi|332526758|ref|ZP_08402860.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
gi|332111161|gb|EGJ11193.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
Length = 676
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ KP A AN+KAFL+NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFWFKKPSATFANMKAFLVNRVGDFGFILGIGLIVAY 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 AGTLDYAEAFAKGPELAALSFPGQDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL+ +L IG+ITA FMG LGIIQNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNFVLVIGSITALFMGFLGIIQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY+V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT+L+G L+L+G P FSGFYSKD
Sbjct: 377 GLRKYMPITWITALLGSLALIGTPLFSGFYSKDS 410
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 109/199 (54%), Gaps = 13/199 (6%)
Query: 363 QIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLR 416
Q W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R
Sbjct: 220 QDWMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVAR 278
Query: 417 FSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
S P+F + S N ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ + +
Sbjct: 279 MS-PLF-ELSDTALNFVLVIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVAL-GV 335
Query: 477 TKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFS 535
+ S+ A+ +++HA + +F++ G + + I N GG+ +P + ++ S
Sbjct: 336 SAYSV--AVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITALLGS 393
Query: 536 LANCSLPGTSGFIGEFMII 554
LA P SGF + II
Sbjct: 394 LALIGTPLFSGFYSKDSII 412
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 143/305 (46%), Gaps = 24/305 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI ++ A +K F++ + GF
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKKPSATFANMKAFLVNRVGDFGF 186
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GTL+ F + + ++ + + + +G K P
Sbjct: 187 IL-GIGLIVAYAGTLDYAEAFAKGPELAALSFPGQDWMLITVICICLFIGAMGKSAQFPL 245
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ +L+I +I +L
Sbjct: 246 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALNF--VLVIGSITALF 303
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 304 MGFLG-IIQNDIKRVVAYSTLSQLGYM---TVALGVSAYSVAVFHLMTHAFFKALLF--- 356
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
L A VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 357 -LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITALLGSLALIGTPLFSGFYSKDS 410
Query: 879 IFEKI 883
I E +
Sbjct: 411 IIEAV 415
>gi|307101734|ref|YP_003875493.1| NADH dehydrogenase subunit 4 [Silene latifolia]
gi|296040773|gb|ADG85354.1| NADH dehydrogenase subunit 4 [Silene latifolia]
gi|301338029|gb|ADK73321.1| NADH dehydrogenase subunit 4 [Silene latifolia]
Length = 495
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/366 (50%), Positives = 260/366 (71%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 43.9 bits (102), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 18/201 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII-- 713
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 714 -ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
I L L T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKLGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIISIK 793
+IAYSS+AHM + + S+
Sbjct: 307 IIAYSSVAHMNFVTIGMFSLN 327
>gi|11466666|ref|NP_066349.1| NADH dehydrogenase subunit 4 [Malawimonas jakobiformis]
gi|10178704|gb|AAG13716.1|AF295546_42 NADH dehydrogenase subunit 4 [Malawimonas jakobiformis]
Length = 486
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 182/366 (49%), Positives = 260/366 (71%), Gaps = 5/366 (1%)
Query: 226 IDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAF 284
I + N+ Y++GIDG+S++F+ LT F+ I IL S + I+ + EYM FL+L L++ F
Sbjct: 68 IPFLNLNYYIGIDGISIFFLILTTFLVPICILASWNSIRHYVREYMILFLLLETLMMNVF 127
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY- 342
C +D +LFYIFFE+ LIP+F+IIG WG R +AA +FFLYTL+GSL ML +++ +Y+
Sbjct: 128 CVIDIILFYIFFESVLIPMFLIIGIWGARERKIHAAFQFFLYTLLGSLFMLFAILIIYFN 187
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
F +L + S + Q+ L++ FFI+FA+K+P+ P+H WLP+AHVEAPT GSVIL
Sbjct: 188 TGTTDFKVLLVTEFS--RNRQLLLWLAFFISFAVKVPMVPVHIWLPEAHVEAPTAGSVIL 245
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I+LKLG YGLLRFSL +FPDA+ Y+ L+ T+ +I+IIY SL + QID+KK+IAYSS
Sbjct: 246 AGILLKLGTYGLLRFSLTLFPDANIYYIPLVYTMGVIAIIYTSLTTLRQIDLKKIIAYSS 305
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHM FV LG+F L +I+G+I+ M+SH +SSA+F+ IG LY++ TR++ + GI
Sbjct: 306 VAHMNFVILGLFSLNIEAIEGSILLMLSHGFVSSALFLCIGVLYDRHHTRIVRYYSGITL 365
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P FS F+ F+LAN SLP TS FIGEF+I+L+ + N I +L ST +I AAY++ L
Sbjct: 366 TMPIFSTLFLFFTLANISLPTTSSFIGEFLILLAVFQNNTSICILASTGIILGAAYAIWL 425
Query: 583 SKNIIF 588
+ F
Sbjct: 426 YNRVAF 431
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTA-LSIIL 105
K P+H WLP++ +E PT A ++I A ++ G + + R S LF +N + ++
Sbjct: 219 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGLLRFSLTLFPDANIYYIPLVY 277
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+G I + L + Q D+K+IIAYS+++ + ++ +G L + A SI +++H F
Sbjct: 278 TMGVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVILGLFSLNIEAIEGSILLMLSHGFV 337
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + H + +R G+ MPI L L+ + P S F
Sbjct: 338 SSALFLCIG-VLYDRHHTRIVRYYSGITLTMPIFSTLFLFFTLANISLPTTSSF 390
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 122/264 (46%), Gaps = 24/264 (9%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA ++F+ +L S FML+ I I+Y TGT + F V+ + + + L L +
Sbjct: 161 HAAFQFFLYTLLGSLFMLFAILIIYFNTGTTD----FKVLLVTEFSRNRQLLLWLAFFIS 216
Query: 690 LSFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN 744
+ K+ + P H+W+P+ + G+ I+ +LL KL + ++ R + I
Sbjct: 217 FAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILL----KLGTYGLL-RFSLTLFPDANIY 271
Query: 745 WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
+ ++ + + ++I +++ + Q + K++IAYSS+AHM ++ + S+ +
Sbjct: 272 YIPLVYTMGVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVILGLFSLNIE--------A 323
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ + ++++ F F I +L + + T + + G+ P + + + F +
Sbjct: 324 IEGSILLMLSHGFVSSALFLCIGVLYDR--HHTRIVRYYSGITLTMPIFSTLFLFFTLAN 381
Query: 865 AGFPPTIGFYAKFFIFEKIFETQK 888
P T F +F I +F+
Sbjct: 382 ISLPTTSSFIGEFLILLAVFQNNT 405
>gi|296040775|gb|ADG85355.1| NADH dehydrogenase subunit 4 [Silene noctiflora]
Length = 495
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/366 (50%), Positives = 261/366 (71%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ +I+ EY+ AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVLLTTFLIPICILVGWANIRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML+ ++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + Q++L++ FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 ETGTTDLQILLSTEFS--ERRQLFLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLLRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F+ F+LAN SLPGTS F+GEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFLFFTLANMSLPGTSSFVGEFLILVGAFQRNSLVATLAAIGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLLRYYGGLVSTMP 375
Score = 46.6 bits (109), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 131/297 (44%), Gaps = 28/297 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML GI ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGILLILLETGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII-- 713
+LQ + + + + L L+ + K+ + P H+W+P+ + A S+I
Sbjct: 198 TDLQILLST-EFSERRQLFLWLAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 714 -ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
I L L T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKLGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHM + + S+ I GL + + +F +G +L +
Sbjct: 307 IIAYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGL--VSSALFLCVG------VLYDR 358
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT L + GL P + I + F + P T F +F I F+ +
Sbjct: 359 --HKTRLLRYYGGLVSTMPNFSTIFLFFTLANMSLPGTSSFVGEFLILVGAFQRNSL 413
>gi|330817781|ref|YP_004361486.1| Proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia gladioli BSR3]
gi|327370174|gb|AEA61530.1| Proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia gladioli BSR3]
Length = 682
Score = 343 bits (881), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF+Y + AI AN+KAF++NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYYTRESAIYANMKAFIVNRVGDFGFLLGIGLLLAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 GGSMNYGEVFAKSNALAAMHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAG+FM+TRMSPLFELS+ ALS I IGAITA FMG LG+IQNDIKR
Sbjct: 256 TPISALIHAATMVTAGVFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGVIQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL+AGS+II M H+QDIRNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 107/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGVFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F++ G + + I N GG+ +P + +I SLA P
Sbjct: 341 VFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLIGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 47.4 bits (111), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 135/308 (43%), Gaps = 30/308 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYYTRESAIYANMKAFIVNRVGDFGF 185
Query: 647 LYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI +L G++ +F + + +L ++ + + +G K P H
Sbjct: 186 LLGIGLLLAYGGSMNYGEVFAKSNALAAMHFPGTDWGLLTVACICLFIGAMGKSAQFPLH 245
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAIF 755
+W+PD +G + I L+ + T + ++ R+ L L I +I AI
Sbjct: 246 VWLPDSMEGPTPISALIHAATMVTAGVFMVTRMSPLFELSDAALSF------ITVIGAIT 299
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITY 815
+L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGVI-QNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF 355
Query: 816 IFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYA 875
L A VII + ++ ++ GL + P + +I +L G P GFY+
Sbjct: 356 ----LAAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYS 406
Query: 876 KFFIFEKI 883
K I + +
Sbjct: 407 KDSIIDAV 414
>gi|334129601|ref|ZP_08503405.1| NADH-quinone oxidoreductase subunit L [Methyloversatilis
universalis FAM5]
gi|333445286|gb|EGK73228.1| NADH-quinone oxidoreductase subunit L [Methyloversatilis
universalis FAM5]
Length = 678
Score = 343 bits (880), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P A+ ANLKAFL+NR
Sbjct: 137 MSNNFVQLFFGWEAVGLVSYLLIGFWFKRPTAVYANLKAFLVNRVGDFGFLLGIGLIAAY 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 197 AGTLNYAEVFAKREELVAMTVAGTGWPLLTAACIGLFIGAMGKSAQVPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS TALS +L IGA TA FMG LGIIQNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVTRMSPLFELSETALSFVLVIGATTALFMGFLGIIQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY+ ++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMP+T ITSLIG L+L+G PF SGFYSKD
Sbjct: 377 GLWKYMPLTWITSLIGSLALIGVPFLSGFYSKDS 410
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 139/278 (50%), Gaps = 19/278 (6%)
Query: 296 FEATLIPIFIIIGTW-GGSNRSYAAIKFFLYTLMGSL--LMLISMIYLYYISNKSFNILS 352
+EA + +++IG W YA +K FL +G L+ I +I Y + + +
Sbjct: 148 WEAVGLVSYLLIGFWFKRPTAVYANLKAFLVNRVGDFGFLLGIGLIAAYAGTLNYAEVFA 207
Query: 353 WHQ--LSITKIEQIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAA 404
+ +++T W +T FI K P+H WLPD+ +E PT ++I AA
Sbjct: 208 KREELVAMTVAGTGWPLLTAACIGLFIGAMGKSAQVPLHVWLPDS-MEGPTPISALIHAA 266
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
M+ G + + R S P+F + S + ++ + + +++ + ++Q DIK+++AYS+++
Sbjct: 267 TMVTAGIFMVTRMS-PLF-ELSETALSFVLVIGATTALFMGFLGIIQNDIKRVVAYSTLS 324
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINV 523
+G++T+ L + A+ +++HA + +F+ G + M + + N GG+
Sbjct: 325 QLGYMTVA---LGVSAYSAAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLWKY 381
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFN 561
+P + +I SLA +P SGF + II AV F+
Sbjct: 382 MPLTWITSLIGSLALIGVPFLSGFYSKDSII-EAVHFS 418
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 131/303 (43%), Gaps = 20/303 (6%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN + ++ G E + L +LI + A +K F++ +
Sbjct: 127 LFTFSMLMLVMSNNFVQLFFGWEAVGLVSYLLIGFWFKRPTAVYANLKAFLVNRVGDFGF 186
Query: 647 LYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI ++ GTL +F + + +L + + + +G K P H
Sbjct: 187 LLGIGLIAAYAGTLNYAEVFAKREELVAMTVAGTGWPLLTAACIGLFIGAMGKSAQVPLH 246
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 247 VWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSETALSFVLVIGATTALFM 304
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
I Q + KR++AYS+++ +G M +++ S + +F+ F + + L
Sbjct: 305 GFLGIIQNDIKRVVAYSTLSQLGYM---TVALGVSAYSAAVFHLMTHAFFKALLF----L 357
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA VI+ + ++ ++ GL + P + +I +L G P GFY+K I
Sbjct: 358 GAGSVIMGMHHD-----QDMRNMGGLWKYMPLTWITSLIGSLALIGVPFLSGFYSKDSII 412
Query: 881 EKI 883
E +
Sbjct: 413 EAV 415
>gi|395004011|ref|ZP_10388100.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Acidovorax sp. CF316]
gi|394318111|gb|EJE54581.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Acidovorax sp. CF316]
Length = 684
Score = 343 bits (880), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTLNYSEIFAKSGELGGLAFPGTDWLLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ IL IG+ITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFILIIGSITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P F+GFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPLFAGFYSKDS 415
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WLLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFILIIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLA 400
Query: 538 NCSLPGTSGFIGEFMIILSAVKFN 561
P +GF + II AV F+
Sbjct: 401 LIGTPLFAGFYSKDSII-EAVHFS 423
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 138/304 (45%), Gaps = 22/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF + + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYTGTLNYSEIFAKSGELGGLAFPGTDWLLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALNFILIIGSITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K I
Sbjct: 362 LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFAGFYSKDSI 416
Query: 880 FEKI 883
E +
Sbjct: 417 IEAV 420
>gi|309781863|ref|ZP_07676596.1| NADH dehydrogenase (ubiquinone), L subunit [Ralstonia sp.
5_7_47FAA]
gi|404396476|ref|ZP_10988270.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Ralstonia sp. 5_2_56FAA]
gi|308919504|gb|EFP65168.1| NADH dehydrogenase (ubiquinone), L subunit [Ralstonia sp.
5_7_47FAA]
gi|348613566|gb|EGY63145.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Ralstonia sp. 5_2_56FAA]
Length = 686
Score = 343 bits (880), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 192/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFW+ +P AI AN+KAFL+NR
Sbjct: 141 MSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGFVLGIGLLLAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 SGSLSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+ ALS +L IGAITA FMG LGIIQ DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLFELSDNALSFVLIIGAITALFMGFLGIIQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 381 GLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDS 414
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLG 410
WH L++ I FI K +P+H WLPD+ +E PT ++I AA M+ G
Sbjct: 225 DWHMLTVACI-------CLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAG 276
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
+ + R S P+F + S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T
Sbjct: 277 IFMVARMS-PLFELSDNALS-FVLIIGAITALFMGFLGIIQTDIKRVVAYSTLSQLGYMT 334
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSV 529
+ L + Q A+ +++HA + +F+ G + + + N GG+ +P +
Sbjct: 335 VA---LGASAYQVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWL 391
Query: 530 FFIIFSLANCSLPGTSGFIGEFMII 554
++ SLA P +GF + II
Sbjct: 392 TSLVGSLALIGTPFFAGFYSKDSII 416
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 139/308 (45%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIYANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L +G+L +F I + +L ++ + + +G K P
Sbjct: 191 VL-GIGLLLAYSGSLSYADVFAARDNLATIGFPGTDWHMLTVACICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L N +LI+ + +
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDNALSFVLIIGAITALF 307
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 308 MGFLGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYQVAVFHLMTHAFFKALLF---- 360
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P L ++ +L G P GFY+K I
Sbjct: 361 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTSLVGSLALIGTPFFAGFYSKDSI 415
Query: 880 FEKIFETQ 887
E + E+
Sbjct: 416 IEAVRESH 423
>gi|121593388|ref|YP_985284.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Acidovorax sp. JS42]
gi|120605468|gb|ABM41208.1| NADH dehydrogenase subunit L [Acidovorax sp. JS42]
Length = 672
Score = 343 bits (880), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 177/274 (64%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFWY K AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWYKKDTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGSFNYGEIFAKANELGAIGFPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ +L IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFVLVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M HNQDIR MG
Sbjct: 322 VIAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT IT L+G L+L+G PFFSGFYSKD
Sbjct: 382 GVRKYMPITWITFLLGSLALIGTPFFSGFYSKDA 415
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 21/201 (10%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N ++ + I+ +++ + ++Q DIK++IAYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFVLVIGAITALFMGFLGIIQNDIKRVIAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ A+ +++HA + +F+ IG +NQ I GG+ +P + F++
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQD----IRWMGGVRKYMPITWITFLL 396
Query: 534 FSLANCSLPGTSGFIGEFMII 554
SLA P SGF + II
Sbjct: 397 GSLALIGTPFFSGFYSKDAII 417
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 144/309 (46%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWYKKDTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ G+ IF I + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYAGSFNYGEIFAKANELGAIGFPGTDWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ +L+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDTALNF--VLVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR+IAYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFL-GIIQNDIKRVIAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIIGMHHN-----QDIRWMGGVRKYMPITWITFLLGSLALIGTPFFSGFYSKDA 415
Query: 879 IFEKIFETQ 887
I E + +
Sbjct: 416 IIEAVHASH 424
>gi|295676048|ref|YP_003604572.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Burkholderia sp. CCGE1002]
gi|295435891|gb|ADG15061.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. CCGE1002]
Length = 688
Score = 343 bits (880), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAF++NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGFLLGIGLLFAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRTELAALNFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS ++ IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFVMVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FVMVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 134/303 (44%), Gaps = 20/303 (6%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGF 185
Query: 647 LYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI +L+ G++ +F + + +L ++ + + +G K P H
Sbjct: 186 LLGIGLLFAFAGSMNYGEVFAKRTELAALNFPGTDWGLLTVACICLFIGAMGKSAQFPLH 245
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L ++++ + +
Sbjct: 246 VWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFVMVIGAITALFM 303
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + + L
Sbjct: 304 GFLGIVQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF----L 356
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA VII + ++ ++ GL + P + +I +L G P GFY+K I
Sbjct: 357 GAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSKDSII 411
Query: 881 EKI 883
+ +
Sbjct: 412 DAV 414
>gi|209518504|ref|ZP_03267325.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. H160]
gi|209501049|gb|EEA01084.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. H160]
Length = 683
Score = 343 bits (879), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAF++NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGFLLGIGLLFAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+TALS ++ IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFVMVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FVMVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 134/303 (44%), Gaps = 20/303 (6%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGF 185
Query: 647 LYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI +L+ G++ +F + + +L ++ + + +G K P H
Sbjct: 186 LLGIGLLFAFAGSMNYGEVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLH 245
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L ++++ + +
Sbjct: 246 VWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDTALSFVMVIGAITALFM 303
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + + L
Sbjct: 304 GFLGIVQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF----L 356
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA VII + ++ ++ GL + P + +I +L G P GFY+K I
Sbjct: 357 GAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSKDSII 411
Query: 881 EKI 883
+ +
Sbjct: 412 DAV 414
>gi|58579163|ref|YP_197375.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str.
Welgevonden]
gi|58417789|emb|CAI26993.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str.
Welgevonden]
Length = 463
Score = 343 bits (879), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/358 (53%), Positives = 252/358 (70%), Gaps = 5/358 (1%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILISLDIKK--KLAEYMSAFLILSGLIIGAFCALDGMLF 292
+G+DGLSL I LT+F+ L+ + SL K L +++ L+L GL IG F +LD ++F
Sbjct: 46 IGVDGLSLPLILLTSFLFLLCTVFSLFNMKIYNLRTFIALLLLLEGLTIGVFASLDIIMF 105
Query: 293 YIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNI-- 350
YIFFE+ LIP+F IIG WG +R YA K FLYTL GSLL LI++IY+Y S+K NI
Sbjct: 106 YIFFESVLIPMFFIIGIWGHEDRIYATFKLFLYTLAGSLLFLIAIIYIYLFSDKVSNIEQ 165
Query: 351 LSWHQLSITKIE-QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
LS+ + I+ Q WL+ FFI+FAIKIPI P HTWLP+AHV+APT GSV+LA I++K+
Sbjct: 166 LSYILPNFLNIKAQKWLWCAFFISFAIKIPIVPFHTWLPNAHVQAPTVGSVLLAGILIKV 225
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G Y LLRFS+P+ P+A+ YFSN +I LS+I +IY SLI+ VQ +IKK IAYSSIAHMGFV
Sbjct: 226 GTYALLRFSIPMLPEANMYFSNFVIILSIIGVIYASLISFVQSNIKKFIAYSSIAHMGFV 285
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
T GIF + I GAI QMISH LIS+A+F +G LY++ T IS + G+ V+P FS+
Sbjct: 286 TAGIFSFNEYGISGAIFQMISHGLISAALFFCVGMLYDRNHTLEISKYSGLAKVMPKFSI 345
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
FI F++A+ +LPGTSGF+GEF+ IL ++ L +T +I A Y L LSK II
Sbjct: 346 MFIFFTMASIALPGTSGFVGEFLSILGVFHYSKLFAALIATGVILGAVYMLFLSKEII 403
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILFIGAIT 111
P HTWLP++ ++ PT S L+ A ++ G + + R S P+ +N S ++ + I
Sbjct: 198 PFHTWLPNAHVQAPTVGSVLL-AGILIKVGTYALLRFSIPMLPEANMYFSNFVIILSIIG 256
Query: 112 AFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-GVSAYTVS--IFHLMTHAFFKALLFL 168
+ L+ +Q++IK+ IAYS+++ +G++T G+ + Y +S IF +++H A LF
Sbjct: 257 VIYASLISFVQSNIKKFIAYSSIAHMGFVTAGIFSFNEYGISGAIFQMISHGLISAALFF 316
Query: 169 SAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
G ++ + H +I GL K MP I + ++ + P SGF
Sbjct: 317 CVG-MLYDRNHTLEISKYSGLAKVMPKFSIMFIFFTMASIALPGTSGF 363
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 688 VGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ I PFH W+P+ + Q ++ LL K+ + ++ R I L + +
Sbjct: 188 ISFAIKIPIVPFHTWLPNAHVQAPTVGSVLLAGILIKVGTYALL-RFSIPMLPEANMYFS 246
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++IL+I +I ++ + Q N K+ IAYSSIAHMG + I S + IF
Sbjct: 247 NFVIILSIIGVIYASLISFVQSNIKKFIAYSSIAHMGFVTAGIFSFNEYGISGAIFQMIS 306
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
GL I +F +G +L + N T E+ + GL + P +++ + F +
Sbjct: 307 HGL--ISAALFFCVG------MLYDR--NHTLEISKYSGLAKVMPKFSIMFIFFTMASIA 356
Query: 867 FPPTIGFYAKFFIFEKIFETQKIW 890
P T GF +F +F K++
Sbjct: 357 LPGTSGFVGEFLSILGVFHYSKLF 380
>gi|393776309|ref|ZP_10364605.1| NADH:ubiquinone oxidoreductase subunit L [Ralstonia sp. PBA]
gi|392716698|gb|EIZ04276.1| NADH:ubiquinone oxidoreductase subunit L [Ralstonia sp. PBA]
Length = 692
Score = 343 bits (879), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 173/273 (63%), Positives = 193/273 (70%), Gaps = 53/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY +P AI AN+KAFL+NR
Sbjct: 146 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLVNRVGDFGFILGIGLLLAY 205
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 206 SGSLNYTDVFAARDQLATVIFPGTDWMMLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 265
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+ ALS I+ IG+ITA FMG LGI+QNDIKR
Sbjct: 266 TPISALIHAATMVTAGIFMVGRMSPLFELSDMALSFIIVIGSITALFMGFLGIVQNDIKR 325
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY + +FHLMTHAFFKALLFL+AGS+II M H+QD+RNMG
Sbjct: 326 VVAYSTLSQLGYMTVALGASAYQIGVFHLMTHAFFKALLFLAAGSVIIGMHHDQDMRNMG 385
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
GL KYMPIT ITSLIG L+L+G PFF+GFYSKD
Sbjct: 386 GLRKYMPITWITSLIGSLALIGTPFFAGFYSKD 418
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 105/194 (54%), Gaps = 9/194 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 239 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVGRMS-PLFELSD 296
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S II + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + Q +
Sbjct: 297 MALS-FIIVIGSITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGASAYQIGVF 352
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F++ G + + + N GG+ +P + +I SLA P +
Sbjct: 353 HLMTHAFFKALLFLAAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFA 412
Query: 546 GFIGEFMIILSAVK 559
GF + +II AVK
Sbjct: 413 GFYSKDLII-EAVK 425
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 147/312 (47%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN L ++ G E + L +LI ++ IF A +K F++ +
Sbjct: 136 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIF---ANMKAFLVNRVGD 192
Query: 644 -GFMLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L +G+L +F + + +L ++ + + +G K
Sbjct: 193 FGFIL-GIGLLLAYSGSLNYTDVFAARDQLATVIFPGTDWMMLTVACICLFIGAMGKSAQ 251
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIF 755
P H+W+PD +G + I L+ + T + ++ R+ L L + I++I +I
Sbjct: 252 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVGRM--SPLFELSDMALSFIIVIGSIT 309
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITY 815
+L +G + I Q + KR++AYS+++ +G M ++ + ++ G+F+++T+
Sbjct: 310 ALFMGFL-GIVQNDIKRVVAYSTLSQLGYMTVALGA-----------SAYQIGVFHLMTH 357
Query: 816 IF----AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
F L A VII + ++ ++ GL + P + +I +L G P
Sbjct: 358 AFFKALLFLAAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFA 412
Query: 872 GFYAKFFIFEKI 883
GFY+K I E +
Sbjct: 413 GFYSKDLIIEAV 424
>gi|358638057|dbj|BAL25354.1| NADH dehydrogenase I, chain L [Azoarcus sp. KH32C]
Length = 674
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
M+NN QLF GWE VG+ SYLLIGFWY++P AI ANLKAFL+NR
Sbjct: 134 MANNFMQLFFGWEAVGLVSYLLIGFWYERPTAIYANLKAFLVNRVGDFGFLLGIGLIAAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 194 AGSLNYAEVFAKGGELAAQEMAATGWPLITAICICLFIGAMGKSAQVPLHVWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+ ALS +L IGA TA FMG LGI+QNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVARMSPLFELSDVALSFVLVIGATTALFMGFLGIVQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+ ++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 314 VVAYSTLSQLGYMTVALGASAYSAAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMPIT +TSL+G L+L+G PFF+GFYSKD
Sbjct: 374 GLWKYMPITWVTSLLGSLALIGFPFFAGFYSKDS 407
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 162/340 (47%), Gaps = 23/340 (6%)
Query: 225 WIDYFNIYYFLG--IDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIG 282
W+ N+ + +G +D L++ + + F++L++ + ++ + Y F +S
Sbjct: 69 WMKSGNLTFEVGFLVDSLTVMMMLVVTFVSLMVHIYTIGYMHEDPGYQRFFSYISLFTFS 128
Query: 283 AFC---ALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSL--LMLIS 336
A + M + +EA + +++IG W + YA +K FL +G L+ I
Sbjct: 129 MLMLVMANNFMQLFFGWEAVGLVSYLLIGFWYERPTAIYANLKAFLVNRVGDFGFLLGIG 188
Query: 337 MIYLYYIS-NKSFNILSWHQLSITKIEQI-WLFIT-----FFIAFAIKIPIWPMHTWLPD 389
+I Y S N + +L+ ++ W IT FI K P+H WLPD
Sbjct: 189 LIAAYAGSLNYAEVFAKGGELAAQEMAATGWPLITAICICLFIGAMGKSAQVPLHVWLPD 248
Query: 390 AHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
+ +E PT ++I AA M+ G + + R S P+F + S ++ + + +++ +
Sbjct: 249 S-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSDVALS-FVLVIGATTALFMGFLG 305
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYN 507
+VQ DIK+++AYS+++ +G++T+ L + A+ +++HA + +F+ G +
Sbjct: 306 IVQNDIKRVVAYSTLSQLGYMTVA---LGASAYSAAVFHLMTHAFFKALLFLGAGSVIIG 362
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
+ + N GG+ +P V ++ SLA P +GF
Sbjct: 363 MHHDQDMRNMGGLWKYMPITWVTSLLGSLALIGFPFFAGF 402
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 138/310 (44%), Gaps = 26/310 (8%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN + ++ G E + L +LI + A +K F++ +
Sbjct: 124 LFTFSMLMLVMANNFMQLFFGWEAVGLVSYLLIGFWYERPTAIYANLKAFLVNRVGDFGF 183
Query: 647 LYGISILYGITGTLELQSIFNVIKLNNINCSVLALS--------LLLIIVGLSFKLGISP 698
L GI ++ G+L +F K + +A + + + +G K P
Sbjct: 184 LLGIGLIAAYAGSLNYAEVFA--KGGELAAQEMAATGWPLITAICICLFIGAMGKSAQVP 241
Query: 699 FHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSL 757
H+W+PD +G + I L+ + T + ++ R+ L L + +L+I A +L
Sbjct: 242 LHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDVALSFVLVIGATTAL 299
Query: 758 IIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
+G + I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 FMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGASAYSAAVFHLMTHAFFKALLF-- 353
Query: 818 AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
LGA VII + ++ ++ GL + P + ++ +L GFP GFY+K
Sbjct: 354 --LGAGSVIIGMHHD-----QDMRNMGGLWKYMPITWVTSLLGSLALIGFPFFAGFYSKD 406
Query: 878 FIFEKIFETQ 887
I E + +
Sbjct: 407 SIIEAVHASH 416
>gi|351731279|ref|ZP_08948970.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Acidovorax radicis N35]
Length = 670
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 130 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 189
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 190 TGTLNYSEIFAKAGELGGLPFPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 249
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ IL IG+ITA FMG LGIIQNDIKR
Sbjct: 250 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFILIIGSITALFMGFLGIIQNDIKR 309
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 310 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 369
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P F+GFYSKD
Sbjct: 370 GVRKYMPITWITSLLGSLALIGTPLFAGFYSKDS 403
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 215 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 273
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 274 -PLF-ELSDTALNFILIIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 328
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + ++ SLA
Sbjct: 329 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLA 388
Query: 538 NCSLPGTSGFIGEFMIILSAVKFN 561
P +GF + II AV F+
Sbjct: 389 LIGTPLFAGFYSKDSII-EAVHFS 411
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 138/304 (45%), Gaps = 22/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 120 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 179
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF + + ++ + + + +G K P
Sbjct: 180 IL-GIGLIAAYTGTLNYSEIFAKAGELGGLPFPGTDWMLITVICICLFIGAMGKSAQFPL 238
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +LI+ + +
Sbjct: 239 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALNFILIIGSITALF 296
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 297 MGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF---- 349
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K I
Sbjct: 350 LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFAGFYSKDSI 404
Query: 880 FEKI 883
E +
Sbjct: 405 IEAV 408
>gi|86359324|ref|YP_471216.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli CFN
42]
gi|86283426|gb|ABC92489.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli CFN
42]
Length = 491
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 248/359 (69%), Gaps = 7/359 (1%)
Query: 197 CITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIII 256
CI L G + A F+ + + W+ F I Y LGIDG+S F+ LTA + +
Sbjct: 44 CIAMLAGFDTTTHAMQFT------ETRQWVPAFGINYALGIDGISALFVFLTALLGSTCV 97
Query: 257 LIS-LDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
L S + I +K+ E+M + L + L++G FCALD LFY+F+EA LIP+++IIG WGG R
Sbjct: 98 LASWVAIDRKVKEFMVSLLAMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGDGR 157
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFA 375
YAA KFFLYTL GS+L L+ +I LY+ ++F+IL+ + Q WLF F +AFA
Sbjct: 158 VYAAFKFFLYTLAGSVLFLVGIIVLYFNGGETFDILALTAQDLPFGVQSWLFFAFLVAFA 217
Query: 376 IKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIIT 435
+K+P+ P+HTWLP AHV+APT GS+ILA ++LK+G YG LRFSLP+ PDAS YFS L+++
Sbjct: 218 VKVPMVPVHTWLPHAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPDASVYFSTLMLS 277
Query: 436 LSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
LS ++I+Y L+A+ Q D+KKL+AYSSI+HMGFVT+G+F L ++G I+QM +H + +
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGLFALNLRGLEGGILQMFNHGVTT 337
Query: 496 SAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
A+F+ +G +Y + TR I+++GG++ P ++ F +F L++ +LPGT+ F+GE +++
Sbjct: 338 GALFLFVGLIYERTHTRSIADYGGMMKAAPVYTAFLALFILSSMALPGTNSFVGELLVL 396
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K P+HTWLP + ++ PT A ++I A ++ G + R S P+ ++ S ++L
Sbjct: 219 KVPMVPVHTWLPHAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPDASVYFSTLMLS 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGLFALNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GG+ K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIADYGGMMKAAPV 368
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
AA K+F+ + S L GI +LY G F+++ L ++ V + +V
Sbjct: 160 AAFKFFLYTLAGSVLFLVGIIVLYFNGG-----ETFDILALTAQDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+P + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPHAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPDASVYFST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIK 793
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + + ++
Sbjct: 274 LMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGLFALN 319
>gi|57239205|ref|YP_180341.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str.
Welgevonden]
gi|58617216|ref|YP_196415.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str.
Gardel]
gi|57161284|emb|CAH58205.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str.
Welgevonden]
gi|58416828|emb|CAI27941.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str.
Gardel]
Length = 486
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 192/358 (53%), Positives = 252/358 (70%), Gaps = 5/358 (1%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILISLDIKK--KLAEYMSAFLILSGLIIGAFCALDGMLF 292
+G+DGLSL I LT+F+ L+ + SL K L +++ L+L GL IG F +LD ++F
Sbjct: 69 IGVDGLSLPLILLTSFLFLLCTVFSLFNMKIYNLRTFIALLLLLEGLTIGVFASLDIIMF 128
Query: 293 YIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNI-- 350
YIFFE+ LIP+F IIG WG +R YA K FLYTL GSLL LI++IY+Y S+K NI
Sbjct: 129 YIFFESVLIPMFFIIGIWGHEDRIYATFKLFLYTLAGSLLFLIAIIYIYLFSDKVSNIEQ 188
Query: 351 LSWHQLSITKIE-QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
LS+ + I+ Q WL+ FFI+FAIKIPI P HTWLP+AHV+APT GSV+LA I++K+
Sbjct: 189 LSYILPNFLNIKAQKWLWCAFFISFAIKIPIVPFHTWLPNAHVQAPTVGSVLLAGILIKV 248
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G Y LLRFS+P+ P+A+ YFSN +I LS+I +IY SLI+ VQ +IKK IAYSSIAHMGFV
Sbjct: 249 GTYALLRFSIPMLPEANMYFSNFVIILSIIGVIYASLISFVQSNIKKFIAYSSIAHMGFV 308
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
T GIF + I GAI QMISH LIS+A+F +G LY++ T IS + G+ V+P FS+
Sbjct: 309 TAGIFSFNEYGISGAIFQMISHGLISAALFFCVGMLYDRNHTLEISKYSGLAKVMPKFSI 368
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
FI F++A+ +LPGTSGF+GEF+ IL ++ L +T +I A Y L LSK II
Sbjct: 369 MFIFFTMASIALPGTSGFVGEFLSILGVFHYSKLFAALIATGVILGAVYMLFLSKEII 426
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILFIGAIT 111
P HTWLP++ ++ PT S L+ A ++ G + + R S P+ +N S ++ + I
Sbjct: 221 PFHTWLPNAHVQAPTVGSVLL-AGILIKVGTYALLRFSIPMLPEANMYFSNFVIILSIIG 279
Query: 112 AFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-GVSAYTVS--IFHLMTHAFFKALLFL 168
+ L+ +Q++IK+ IAYS+++ +G++T G+ + Y +S IF +++H A LF
Sbjct: 280 VIYASLISFVQSNIKKFIAYSSIAHMGFVTAGIFSFNEYGISGAIFQMISHGLISAALFF 339
Query: 169 SAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
G ++ + H +I GL K MP I + ++ + P SGF
Sbjct: 340 CVG-MLYDRNHTLEISKYSGLAKVMPKFSIMFIFFTMASIALPGTSGF 386
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 12/204 (5%)
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQ 746
+ + K+ I PFH W+P+ + A + ++LL+ K+ + ++ R I L + +
Sbjct: 211 ISFAIKIPIVPFHTWLPNAHVQAPTVGSVLLAGILIKVGTYALL-RFSIPMLPEANMYFS 269
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
++IL+I +I ++ + Q N K+ IAYSSIAHMG + I S + IF
Sbjct: 270 NFVIILSIIGVIYASLISFVQSNIKKFIAYSSIAHMGFVTAGIFSFNEYGISGAIFQMIS 329
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
GL I +F +G +L + N T E+ + GL + P +++ + F +
Sbjct: 330 HGL--ISAALFFCVG------MLYDR--NHTLEISKYSGLAKVMPKFSIMFIFFTMASIA 379
Query: 867 FPPTIGFYAKFFIFEKIFETQKIW 890
P T GF +F +F K++
Sbjct: 380 LPGTSGFVGEFLSILGVFHYSKLF 403
>gi|385810446|ref|YP_005846842.1| NADH dehydrogenase I subunit M [Ignavibacterium album JCM 16511]
gi|383802494|gb|AFH49574.1| NADH dehydrogenase I subunit M [Ignavibacterium album JCM 16511]
Length = 512
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 285/428 (66%), Gaps = 17/428 (3%)
Query: 173 IIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIY 232
+ IN + IRN G + + IT ++ L G S + K WI N+Y
Sbjct: 22 LFINKEKASAIRNTGLFF-----SAITFILSLFVYFGFDHSSSDFQFVHKFEWIKGLNVY 76
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGML 291
YF+G+DGLSL + LT F+T + ++ S I+ K+ E+ L+L +IG F +LD L
Sbjct: 77 YFVGVDGLSLLLVLLTTFLTPLTLISSWSSIEHKIKEFTFFMLLLETGMIGVFVSLDLFL 136
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
FYIF+EA LIP++ IIG WGG R YAAIKFFLYT+ GSLLML+++++L ++ S
Sbjct: 137 FYIFWEAMLIPMYFIIGIWGGKERIYAAIKFFLYTMFGSLLMLVAIVWLAVYASGSLGYF 196
Query: 352 SWHQLSITKIE-------QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAA 404
+ + K+ Q+W+F+ F ++FAIK+P++P+HTWLPDAHV+APT GSVILA
Sbjct: 197 TTDITQLYKVAPTISRDIQLWMFLAFGLSFAIKVPLFPLHTWLPDAHVQAPTAGSVILAG 256
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
++LK+G YGLLRF+LP+FPDAS YF+ L++I IIY +L+AMVQ D+KKL+AYSS++
Sbjct: 257 VLLKMGTYGLLRFNLPLFPDASLYFAPYFSVLAVIGIIYGALVAMVQTDMKKLVAYSSVS 316
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVI 524
H+GFV LGIF +T+ S+QGA+IQMI+H L + A+F+ +G +Y + TR I+++GGI ++
Sbjct: 317 HLGFVVLGIFAMTQESVQGAVIQMINHGLSTGALFLLVGVIYERTHTREIADYGGIAKLV 376
Query: 525 PHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKF----NFCIGVLTSTALIFSAAYSL 580
P F+ + SL++ LPG +GF+GEF+I+L + K ++ V ++ +IF+A Y L
Sbjct: 377 PFFAFSLMFASLSSIGLPGLNGFVGEFLILLGSFKSGVLNSWWFTVFAASGVIFAAVYLL 436
Query: 581 CLSKNIIF 588
+ + ++F
Sbjct: 437 WMYQRVVF 444
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 99/176 (56%), Gaps = 14/176 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSN----TALSI 103
K FPLHTWLPD+ ++ PT A ++I A ++ G + + R + PLF ++ S+
Sbjct: 229 KVPLFPLHTWLPDAHVQAPT-AGSVILAGVLLKMGTYGLLRFNLPLFPDASLYFAPYFSV 287
Query: 104 ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-GVSAYTV--SIFHLMTHA 160
+ IG I + L+ ++Q D+K+++AYS++S LG++ +G+ ++ +V ++ ++ H
Sbjct: 288 LAVIGII---YGALVAMVQTDMKKLVAYSSVSHLGFVVLGIFAMTQESVQGAVIQMINHG 344
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G +I H ++I + GG+ K +P + + LS +G P +GF
Sbjct: 345 LSTGALFLLVG-VIYERTHTREIADYGGIAKLVPFFAFSLMFASLSSIGLPGLNGF 399
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 130/300 (43%), Gaps = 37/300 (12%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILY----GI 656
L I+ L+ + + I K I+ AAIK+F+ + S ML I L G
Sbjct: 136 LFYIFWEAMLIPMYFIIGIWGGKERIY---AAIKFFLYTMFGSLLMLVAIVWLAVYASGS 192
Query: 657 TG--TLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASI 712
G T ++ ++ V + + + + + GLSF K+ + P H W+PD + A
Sbjct: 193 LGYFTTDITQLYKVAPTISRDIQLW----MFLAFGLSFAIKVPLFPLHTWLPDAHVQAPT 248
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQY 768
+++L+ L + L++ LPL + + +LA+ +I G + A+ Q
Sbjct: 249 AGSVILAGV----LLKMGTYGLLRFNLPLFPDASLYFAPYFSVLAVIGIIYGALVAMVQT 304
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
+ K+++AYSS++H+G ++ I ++ + + GL + G + L
Sbjct: 305 DMKKLVAYSSVSHLGFVVLGIFAMTQESVQGAVIQMINHGL------------STGALFL 352
Query: 829 LKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET 886
L +T +I + G+ + P+ A +M S G P GF +F I F++
Sbjct: 353 LVGVIYERTHTREIADYGGIAKLVPFFAFSLMFASLSSIGLPGLNGFVGEFLILLGSFKS 412
>gi|402703024|ref|ZP_10851003.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia helvetica
C9P9]
Length = 493
Score = 342 bits (878), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 186/380 (48%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KIHSFDLTYIFQLTDNIPLFAQHILWWAIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR L +FP+AS F+ II LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLLLFPNASQEFAIYIIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFSSLLGIYKVNVIATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 425 LGAVYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + LF ++ +I I+++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLLLFPNASQEFAIYIIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQHILWWAIFIAFAVKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LL L N + ++ L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLLLFPNASQEFAIYIIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|190893211|ref|YP_001979753.1| NADH-ubiquinone oxidoreductase subunit M [Rhizobium etli CIAT 652]
gi|190698490|gb|ACE92575.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli
CIAT 652]
Length = 491
Score = 342 bits (878), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 260/388 (67%), Gaps = 8/388 (2%)
Query: 169 SAGSIIINMKHNQDIRNMG-GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
+ ++++ ++ + +R M G+ CI L G + A F+ + + W+
Sbjct: 15 AGAAVLMFLRSDAAVRWMALGVTVLDLALCIAMLAGFDTTTHAMQFT------ETRPWVP 68
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
I Y LGIDG+S F+ LTA + +L S + I +K+ E+M + L + L++G FCA
Sbjct: 69 ALGITYALGIDGISALFVFLTALLGSTCVLASWVAIDRKVKEFMVSLLAMEALMLGVFCA 128
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L L+ +I LY+ +
Sbjct: 129 LDLFLFYVFWEAMLIPMYLIIGIWGGDGRVYAAFKFFLYTLAGSVLFLVGVIVLYFNGGE 188
Query: 347 SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
+F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS+ILA ++
Sbjct: 189 TFDILALTAQDLPFRVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVL 248
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LK+G YG LRFSLP+ PDAS Y+S L+++LS ++I+Y L+A+ Q D+KKL+AYSSI+HM
Sbjct: 249 LKMGAYGFLRFSLPMLPDASVYYSTLMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHM 308
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
GFVT+GIF L ++G I+QM +H + + A+F+ +G +Y + TR I+++GG++ P
Sbjct: 309 GFVTMGIFALNLRGLEGGILQMFNHGVTTGALFLFVGLIYERTHTRSITDYGGLMKAAPV 368
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMII 554
+ F +F L++ +LPGT+ F+GE +++
Sbjct: 369 CTTFLALFILSSMALPGTNSFVGELLVL 396
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ ++ S ++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPDASVYYSTLMLS 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + I + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
LFL G +I H + I + GGL K P+ C T L
Sbjct: 338 GALFLFVG-LIYERTHTRSITDYGGLMKAAPV-CTTFL 373
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 19/257 (7%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G F+++ L + S L +V
Sbjct: 160 AAFKFFLYTLAGSVLFLVGVIVLYFNGG-----ETFDILALTAQDLPFRVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPDASVYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++ I +
Sbjct: 274 LMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNH 333
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
G+ ++F L I + +T + TD + GL + P C + +F+ S
Sbjct: 334 GVTTGALFLFVGL------IYERTHTRSITD----YGGLMKAAPVCTTFLALFILSSMAL 383
Query: 868 PPTIGFYAKFFIFEKIF 884
P T F + + F
Sbjct: 384 PGTNSFVGELLVLSGGF 400
>gi|121604341|ref|YP_981670.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Polaromonas naphthalenivorans CJ2]
gi|120593310|gb|ABM36749.1| NADH dehydrogenase subunit L [Polaromonas naphthalenivorans CJ2]
Length = 674
Score = 342 bits (878), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNMLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFLVNRVGDFGFILGIALIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTLNYGEAFAKADELSKLVFPGTGWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS I+ IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG S Y+V++FHLMTHAFFKALLFL+AGS+II M HNQDIR MG
Sbjct: 322 VIAYSTLSQLGYMTVALGASTYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT IT L+G L+L+G P FSGFYSKD
Sbjct: 382 GVRKYMPITWITFLLGSLALIGTPLFSGFYSKDS 415
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 21/206 (10%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S I+ + I+ +++ + ++Q DIK++IAYS+++ +G++T+ L
Sbjct: 286 -PLFELSDTALS-FIMVIGAITALFMGFLGIIQNDIKRVIAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFIS-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ A+ +++HA + +F++ IG +NQ I GG+ +P + F++
Sbjct: 341 STYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQD----IRWMGGVRKYMPITWITFLL 396
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVK 559
SLA P SGF + II + +
Sbjct: 397 GSLALIGTPLFSGFYSKDSIIEAVAE 422
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 143/320 (44%), Gaps = 22/320 (6%)
Query: 575 SAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIK 634
A Y+ + +F ++++ NN+L ++ G E + L +LI N + A +K
Sbjct: 120 DAGYNRFFAYISLFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMK 179
Query: 635 YFILGILSS-GFMLYGISILYGITGTLELQSIF-NVIKLNNINCSVLALSLLLII----- 687
F++ + GF+L GI+++ GTL F +L+ + L+ +I
Sbjct: 180 AFLVNRVGDFGFIL-GIALIAAYAGTLNYGEAFAKADELSKLVFPGTGWMLITVICICLF 238
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
+G K P H+W+PD +G + I L+ + T + ++ R+ L L
Sbjct: 239 IGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALS 296
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
++++ + + I Q + KR+IAYS+++ +G M +++ S ++ +F+
Sbjct: 297 FIMVIGAITALFMGFLGIIQNDIKRVIAYSTLSQLGYM---TVALGASTYSVAVFHLMTH 353
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
F + + L A VII + +N ++ G+ + P + ++ +L G
Sbjct: 354 AFFKALLF----LAAGSVIIGMHHN-----QDIRWMGGVRKYMPITWITFLLGSLALIGT 404
Query: 868 PPTIGFYAKFFIFEKIFETQ 887
P GFY+K I E + E+
Sbjct: 405 PLFSGFYSKDSIIEAVAESH 424
>gi|333913101|ref|YP_004486833.1| proton-translocating NADH-quinone oxidoreductase subunit L [Delftia
sp. Cs1-4]
gi|333743301|gb|AEF88478.1| proton-translocating NADH-quinone oxidoreductase, chain L [Delftia
sp. Cs1-4]
Length = 679
Score = 342 bits (878), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 197/273 (72%), Gaps = 53/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF+Y+KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFYYNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTMNYGEIFAKLPEIQNTLLPGTGWLLVTVTAICLFIGAMGKSAQFPLHAWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPL+ELS+TALS IL IG+ITA FMG+LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLYELSDTALSFILVIGSITALFMGVLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VIAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
G+ KYMPIT IT L+G L+L+G PFFSGFYSKD
Sbjct: 382 GVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 414
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WLLVTVTAICLFIGAMGKSAQFPLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S I+ + I+ +++ ++ ++Q DIK++IAYS+++ +G++T+ L
Sbjct: 286 -PLYELSDTALS-FILVIGSITALFMGVLGIIQNDIKRVIAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + +I F L
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMP---ITWITFLLG 397
Query: 538 NCSLPGTSGFIG 549
N +L GT F G
Sbjct: 398 NLALIGTPFFSG 409
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 142/310 (45%), Gaps = 26/310 (8%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFYYNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINCSVL--------ALSLLLIIVGLSFKLGIS 697
+L GI ++ TGT+ IF KL I ++L ++ + + +G K
Sbjct: 192 IL-GIGLIAAYTGTMNYGEIFA--KLPEIQNTLLPGTGWLLVTVTAICLFIGAMGKSAQF 248
Query: 698 PFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSL 757
P H W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 249 PLHAWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLYELSDTALSFILVIGSITA 306
Query: 758 IIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
+ V I Q + KR+IAYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 307 LFMGVLGIIQNDIKRVIAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF-- 361
Query: 818 AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 --LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 414
Query: 878 FIFEKIFETQ 887
I E + T
Sbjct: 415 AIIEAVHATN 424
>gi|160900601|ref|YP_001566183.1| proton-translocating NADH-quinone oxidoreductase subunit L [Delftia
acidovorans SPH-1]
gi|160366185|gb|ABX37798.1| proton-translocating NADH-quinone oxidoreductase, chain L [Delftia
acidovorans SPH-1]
Length = 679
Score = 342 bits (877), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 197/273 (72%), Gaps = 53/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF+Y+KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFYYNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTMNYGEIFAKLPEIQNTLLPGTGWLLVTVTAICLFIGAMGKSAQFPLHAWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPL+ELS+TALS IL IG+ITA FMG+LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLYELSDTALSFILVIGSITALFMGVLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VIAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
G+ KYMPIT IT L+G L+L+G PFFSGFYSKD
Sbjct: 382 GVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 414
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WLLVTVTAICLFIGAMGKSAQFPLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S I+ + I+ +++ ++ ++Q DIK++IAYS+++ +G++T+ L
Sbjct: 286 -PLYELSDTALS-FILVIGSITALFMGVLGIIQNDIKRVIAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + +I F L
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMP---ITWITFLLG 397
Query: 538 NCSLPGTSGFIG 549
N +L GT F G
Sbjct: 398 NLALIGTPFFSG 409
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 142/310 (45%), Gaps = 26/310 (8%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFYYNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINCSVL--------ALSLLLIIVGLSFKLGIS 697
+L GI ++ TGT+ IF KL I ++L ++ + + +G K
Sbjct: 192 IL-GIGLIAAYTGTMNYGEIFA--KLPEIQNTLLPGTGWLLVTVTAICLFIGAMGKSAQF 248
Query: 698 PFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSL 757
P H W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 249 PLHAWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLYELSDTALSFILVIGSITA 306
Query: 758 IIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
+ V I Q + KR+IAYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 307 LFMGVLGIIQNDIKRVIAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF-- 361
Query: 818 AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 --LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 414
Query: 878 FIFEKIFETQ 887
I E + T
Sbjct: 415 AIIEAVHATN 424
>gi|332185891|ref|ZP_08387638.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Sphingomonas sp. S17]
gi|332014249|gb|EGI56307.1| proton-translocating NADH-quinone oxidoreductase, chain M family
protein [Sphingomonas sp. S17]
Length = 516
Score = 342 bits (877), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 248/355 (69%), Gaps = 2/355 (0%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
LGIDG +L I L+ F+ I I S I K++ EYM FL L+IG F A D LFY
Sbjct: 75 LGIDGFALLLIMLSVFLMPICIGASWRAIDKRVPEYMGLFLFTEVLMIGTFAAQDLFLFY 134
Query: 294 IFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW 353
+FFEA LIP+++IIG WGG+NR YA+ KFFLYTL+GSLLM ++M+Y+ + + +I +
Sbjct: 135 VFFEAGLIPMYLIIGIWGGANRIYASYKFFLYTLLGSLLMFVAMLYMARTAGTT-SIPAL 193
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
Q WL+I FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LKLG YG
Sbjct: 194 LAYDFPASVQTWLWIAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 253
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
LRF LP+FP+AS + LI LS +++IY SL+A+VQ D+KKLIAYSS+AHM VT+G+
Sbjct: 254 FLRFLLPMFPEASGQLTWLIFALSAVAVIYASLVALVQSDMKKLIAYSSVAHMAIVTIGL 313
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
+ + I+GA+I M+SH L+S A+F+ +G +Y+++ TR I+ +GG+ +P ++V F+
Sbjct: 314 YAFNQQGIEGAMIMMLSHGLVSGALFLCVGVIYDRLHTREIARYGGLSINMPKYAVLFLF 373
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++A+ LPGTSGF+ EF+ ++ + + +L +T +I AAY L L + + +
Sbjct: 374 FTMASIGLPGTSGFVAEFLSLMGTYQVSTWTALLCTTGIILGAAYMLYLYRRVAY 428
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILF-I 107
K +P+HTWLPD+ ++ PT S ++ + G + + P+F ++ L+ ++F +
Sbjct: 217 KMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGFLRFLLPMFPEASGQLTWLIFAL 276
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
A+ + L+ ++Q+D+K++IAYS+++ + +T+GL G+ ++ +++H
Sbjct: 277 SAVAVIYASLVALVQSDMKKLIAYSSVAHMAIVTIGLYAFNQQGIEG---AMIMMLSHGL 333
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G +I + H ++I GGL MP + L ++ +G P SGF ++
Sbjct: 334 VSGALFLCVG-VIYDRLHTREIARYGGLSINMPKYAVLFLFFTMASIGLPGTSGFVAE 390
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 143/338 (42%), Gaps = 53/338 (15%)
Query: 587 IFVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGIL 641
+F+ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 113 LFLFTEVLMIGTFAAQDLFLFYVFFEAGLIPMYLIIGIWGGANRIYAS---YKFFLYTLL 169
Query: 642 SSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHM 701
S M + + GT + ++ + SV + + K+ + P H
Sbjct: 170 GSLLMFVAMLYMARTAGTTSIPALLAY----DFPASVQTWLWIAFFASFAVKMPMWPVHT 225
Query: 702 WVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV------INWQKILLI 751
W+PD + A +++L+ ++ +L ++ LLP+ + W ++
Sbjct: 226 WLPDAHVQAPTAGSVILAG--------VLLKLGGYGFLRFLLPMFPEASGQLTW--LIFA 275
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCD 806
L+ ++I ++ A+ Q + K++IAYSS+AHM GL F+ I+ + ++
Sbjct: 276 LSAVAVIYASLVALVQSDMKKLIAYSSVAHMAIVTIGLYAFNQQGIEGAMIMMLSHGLVS 335
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
LF + I+ L T E+ + GL P A++ + F + G
Sbjct: 336 GALFLCVGVIYDRL---------------HTREIARYGGLSINMPKYAVLFLFFTMASIG 380
Query: 867 FPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK 904
P T GF A+F ++ W LL ++GA
Sbjct: 381 LPGTSGFVAEFLSLMGTYQVST-WTALLCTTGIILGAA 417
>gi|254251872|ref|ZP_04945190.1| NADH dehydrogenase subunit L [Burkholderia dolosa AUO158]
gi|124894481|gb|EAY68361.1| NADH dehydrogenase subunit L [Burkholderia dolosa AUO158]
Length = 682
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|221211746|ref|ZP_03584725.1| NADH dehydrogenase I, L subunit [Burkholderia multivorans CGD1]
gi|221169107|gb|EEE01575.1| NADH dehydrogenase I, L subunit [Burkholderia multivorans CGD1]
Length = 684
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|409052436|ref|YP_006666395.1| NADH dehydrogenase subunit 4 (mitochondrion) [Trebouxiophyceae sp.
MX-AZ01]
gi|402746051|gb|AFQ93750.1| NADH dehydrogenase subunit 4 (mitochondrion) [Trebouxiophyceae sp.
MX-AZ01]
Length = 490
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 183/404 (45%), Positives = 275/404 (68%), Gaps = 5/404 (1%)
Query: 227 DYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFC 285
+Y + + +G+DG+SL+F+ LT F+ + IL I+ + EY AFL+L L+IGAF
Sbjct: 75 EYTTLQFVMGVDGISLFFVILTTFLIPVCILAGWTTIRTSMKEYCIAFLVLEALLIGAFS 134
Query: 286 ALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLY-YI 343
LD +LFY+FFE+ LIP+F+IIG WG R AA +FFLYTL+GSLLML++++ +Y
Sbjct: 135 VLDLLLFYVFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLVGSLLMLLAILLIYCQT 194
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+IL + +K +I L++ FF +FA+K+P+ P+H WLP+AHVEAPT GSVILA
Sbjct: 195 GTTDLHIL--YATPFSKTREILLWLAFFASFAVKVPMLPVHIWLPEAHVEAPTAGSVILA 252
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
I+LKLG YG LRFS+P+FPDAS +F+ L+ TLS+++IIY SL + Q+D+KK+IAYSS+
Sbjct: 253 GILLKLGTYGFLRFSIPLFPDASIFFTPLVETLSILAIIYSSLTTLRQVDLKKIIAYSSV 312
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHM FVTLG+F L I+GAI M++H L+S A+F+ IGFLY++ KTRL+ +GG
Sbjct: 313 AHMNFVTLGLFALNPHGIEGAIFLMLAHGLVSPALFLLIGFLYDRHKTRLLRYYGGCARS 372
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F++ F++F++AN SLPGT+ F+GEF++++ A + N + L ++ ++ AY+L L
Sbjct: 373 MPLFAIMFLVFTMANISLPGTANFVGEFLVLVGAFRSNTLVATLAASTMVLGGAYALWLC 432
Query: 584 KNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIF 627
+++ + + +S LS L+ VL+ +IF
Sbjct: 433 NRLLYGISKPYYLSAFADLSRREFFILVPFLFGVLVMGLAPDIF 476
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 12/193 (6%)
Query: 27 YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIF 85
Y P + T + +L K P+H WLP++ +E PT A ++I A ++ G +
Sbjct: 203 YATPFSKTREILLWLAFFASFAVKVPMLPVHIWLPEAHVEAPT-AGSVILAGILLKLGTY 261
Query: 86 MITRMS-PLFELSN---TALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMT 141
R S PLF ++ T L L I AI + L + Q D+K+IIAYS+++ + ++T
Sbjct: 262 GFLRFSIPLFPDASIFFTPLVETLSILAII--YSSLTTLRQVDLKKIIAYSSVAHMNFVT 319
Query: 142 VGL-GVSAYTV--SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCI 198
+GL ++ + + +IF ++ H LFL G + + + +R GG + MP+ I
Sbjct: 320 LGLFALNPHGIEGAIFLMLAHGLVSPALFLLIG-FLYDRHKTRLLRYYGGCARSMPLFAI 378
Query: 199 TSLIGLLSLVGAP 211
L+ ++ + P
Sbjct: 379 MFLVFTMANISLP 391
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 133/295 (45%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + AA ++F+ ++ S ML I ++Y TGT
Sbjct: 137 DLLLFYVFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLVGSLLMLLAILLIYCQTGT 196
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+L +++ + + L L + K+ + P H+W+P+ + G+ I+
Sbjct: 197 TDL----HILYATPFSKTREILLWLAFFASFAVKVPMLPVHIWLPEAHVEAPTAGSVILA 252
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I I + ++ L+I ++I +++ + Q + K++I
Sbjct: 253 GILL----KLGTYGFL-RFSIPLFPDASIFFTPLVETLSILAIIYSSLTTLRQVDLKKII 307
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + ++ + + +F ++ + F +I L +
Sbjct: 308 AYSSVAHMNFVTLGLFALNP--------HGIEGAIFLMLAHGLVSPALFLLIGFLYDR-- 357
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT L + G + P A++ ++F + P T F +F + F + +
Sbjct: 358 HKTRLLRYYGGCARSMPLFAIMFLVFTMANISLPGTANFVGEFLVLVGAFRSNTL 412
>gi|170748465|ref|YP_001754725.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium radiotolerans JCM 2831]
gi|170654987|gb|ACB24042.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Methylobacterium radiotolerans JCM 2831]
Length = 506
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 189/422 (44%), Positives = 279/422 (66%), Gaps = 3/422 (0%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
L + I+ + +++ + + T +T L+ L++ S + + W+
Sbjct: 15 LCGAAFILTLNGDEESVARNSRWAALATTVVTFLLSLVAWSRYDAASSSFQLVESHAWLT 74
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCA 286
I + LG+DG S+ I LT F+ I S I ++ EY AFL+L +IG F +
Sbjct: 75 E-TIRFKLGVDGFSMPLILLTTFLMPFCIGASWHSIHFRVKEYFVAFLVLETTMIGVFAS 133
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD +LFY+FFEA LIP+F+IIG WGG R YA+ KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 134 LDLLLFYLFFEAGLIPMFLIIGIWGGQRRIYASFKFFLYTLLGSVLMLLAVMAMYWQAGT 193
Query: 347 SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
+ +I + Q Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+
Sbjct: 194 T-DIPTLLQYRFPVQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGIL 252
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LK+G YG +R SLP+ P AS F+ + LS+I+II+ SL AM+Q DIKKLIAYSS+AHM
Sbjct: 253 LKMGGYGFIRISLPMLPVASQEFAPFVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAHM 312
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
GFVTLG+F L + IQGA+ MISH ++S A+F+ +G +Y++M TR I+ +GG++ +P
Sbjct: 313 GFVTLGLFTLNEQGIQGALFLMISHGIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMPL 372
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
++V +IF++AN LPGTSGF+GEF+ +L A K N + ++ +I SAAY+L L +
Sbjct: 373 YAVAMLIFTMANVGLPGTSGFVGEFLAMLGAFKANPNVAFFSTFGIILSAAYALWLYARV 432
Query: 587 IF 588
I+
Sbjct: 433 IY 434
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R+S P+ +++ + +F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRISLPMLPVASQEFAPFVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I F L ++Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSVIAIIFTSLTAMMQTDIKKLIAYSSVAHMGFVTLGLFTLNEQGIQG---ALFLMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL K MP+ + LI ++ VG P SGF +
Sbjct: 339 IVSGALFLCVG-VVYDRMHTREIAAYGGLVKRMPLYAVAMLIFTMANVGLPGTSGFVGE 396
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 117/252 (46%), Gaps = 24/252 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ ++ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAVMAMYWQAGTTDIPTLLQ----YRFPVQMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
+ K+ + P H W+PD + G+ I+ +LL K+ + I R+ + L +
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAGILL----KMGGYGFI-RISLPMLPVASQEF 275
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
+ L++ ++I +++A+ Q + K++IAYSS+AHMG + + ++
Sbjct: 276 APFVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAHMGFVTLGLFTLNE--------QGI 327
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLA 865
LF +I++ + GA + + + + + T E+ + GL +R P A+ M+IF +
Sbjct: 328 QGALFLMISHGI-VSGALFLCVGVVYDRMH-TREIAAYGGLVKRMPLYAVAMLIFTMANV 385
Query: 866 GFPPTIGFYAKF 877
G P T GF +F
Sbjct: 386 GLPGTSGFVGEF 397
>gi|161524215|ref|YP_001579227.1| NADH dehydrogenase subunit L [Burkholderia multivorans ATCC 17616]
gi|189351028|ref|YP_001946656.1| NADH dehydrogenase subunit L [Burkholderia multivorans ATCC 17616]
gi|160341644|gb|ABX14730.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia multivorans ATCC 17616]
gi|189335050|dbj|BAG44120.1| NADH dehydrogenase I chain L [Burkholderia multivorans ATCC 17616]
Length = 684
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|421469576|ref|ZP_15918023.1| NADH dehydrogenase subunit L [Burkholderia multivorans ATCC
BAA-247]
gi|400229427|gb|EJO59275.1| NADH dehydrogenase subunit L [Burkholderia multivorans ATCC
BAA-247]
Length = 684
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|393766067|ref|ZP_10354624.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium sp. GXF4]
gi|392728440|gb|EIZ85748.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Methylobacterium sp. GXF4]
Length = 506
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 188/422 (44%), Positives = 283/422 (67%), Gaps = 3/422 (0%)
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWID 227
L + I+ +K + + + + T +T L+ L++ S + + W+
Sbjct: 15 LCGAAFILTLKGDDESVARNSRWAALATTIVTFLLSLVAWGRYDASSASFQLVESHPWLA 74
Query: 228 YFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
I + LG+DG S+ I LT F+ I S I ++ EY AFL+L +IG F +
Sbjct: 75 E-TIRFKLGVDGFSMPLILLTTFLMPFCIGASWTSIHVRVKEYFVAFLVLETTMIGVFAS 133
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK 346
LD +LFY+FFEA LIP+F+IIG WGG+ R YA+ KFFLYTL+GS+LML++++ +Y+ +
Sbjct: 134 LDLLLFYLFFEAGLIPMFLIIGIWGGARRIYASFKFFLYTLLGSVLMLLAVMAMYWQAGT 193
Query: 347 SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIM 406
+ +I + Q Q WL++ FF +FA+K+P+WP+HTWLPDAHVEAPT GSVILA I+
Sbjct: 194 T-DIPTLLQYRFPVGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGIL 252
Query: 407 LKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
LK+G YG +R SLP+ P AS+ F+ L+ LS+I+II+ SL A++Q DIKKLIAYSS+AHM
Sbjct: 253 LKMGGYGFIRISLPMLPVASHDFAPLVFALSVIAIIFTSLTALMQTDIKKLIAYSSVAHM 312
Query: 467 GFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPH 526
GFVTLG+F L + IQGA+ MISH ++++A+F+ +G +Y++M TR I+ +GG++ +P
Sbjct: 313 GFVTLGLFTLNEQGIQGALFLMISHGIVAAALFLCVGVVYDRMHTREIAAYGGLVKRMPL 372
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNI 586
++V ++F++AN LPGTSGF+GEF+ +L A K N + ++ +I SAAY+L L +
Sbjct: 373 YAVAMMVFTMANVGLPGTSGFVGEFLSMLGAFKANPNVAFFSTFGIILSAAYALWLYARV 432
Query: 587 IF 588
I+
Sbjct: 433 IY 434
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ +E PT A ++I A ++ G + R+S P+ +++ + ++F
Sbjct: 223 KMPMWPVHTWLPDAHVEAPT-AGSVILAGILLKMGGYGFIRISLPMLPVASHDFAPLVFA 281
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I F L ++Q DIK++IAYS+++ +G++T+GL G+ ++F +++H
Sbjct: 282 LSVIAIIFTSLTALMQTDIKKLIAYSSVAHMGFVTLGLFTLNEQGIQG---ALFLMISHG 338
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LFL G ++ + H ++I GGL K MP+ + ++ ++ VG P SGF +
Sbjct: 339 IVAAALFLCVG-VVYDRMHTREIAAYGGLVKRMPLYAVAMMVFTMANVGLPGTSGFVGE 396
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 117/255 (45%), Gaps = 30/255 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
A+ K+F+ +L S ML + +Y GT ++ ++ + L
Sbjct: 165 ASFKFFLYTLLGSVLMLLAVMAMYWQAGTTDIPTLLQ----YRFPVGMQTWLWLAFFASF 220
Query: 691 SFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVI--- 743
+ K+ + P H W+PD + A +++L+ I+ ++ I+ LP++
Sbjct: 221 AVKMPMWPVHTWLPDAHVEAPTAGSVILAG--------ILLKMGGYGFIRISLPMLPVAS 272
Query: 744 -NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
++ ++ L++ ++I +++A+ Q + K++IAYSS+AHMG + + ++
Sbjct: 273 HDFAPLVFALSVIAIIFTSLTALMQTDIKKLIAYSSVAHMGFVTLGLFTLNE-------- 324
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
LF +I++ F + ++ + T E+ + GL +R P A+ MM+F
Sbjct: 325 QGIQGALFLMISHGIVAAALFLCVGVVYDRM--HTREIAAYGGLVKRMPLYAVAMMVFTM 382
Query: 863 SLAGFPPTIGFYAKF 877
+ G P T GF +F
Sbjct: 383 ANVGLPGTSGFVGEF 397
>gi|221199667|ref|ZP_03572711.1| NADH dehydrogenase I, L subunit [Burkholderia multivorans CGD2M]
gi|221205433|ref|ZP_03578448.1| NADH dehydrogenase I, L subunit [Burkholderia multivorans CGD2]
gi|221174271|gb|EEE06703.1| NADH dehydrogenase I, L subunit [Burkholderia multivorans CGD2]
gi|221180952|gb|EEE13355.1| NADH dehydrogenase I, L subunit [Burkholderia multivorans CGD2M]
Length = 684
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|421478302|ref|ZP_15926065.1| NADH dehydrogenase subunit L [Burkholderia multivorans CF2]
gi|400224895|gb|EJO55090.1| NADH dehydrogenase subunit L [Burkholderia multivorans CF2]
Length = 684
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|56478187|ref|YP_159776.1| NADH dehydrogenase I subunit L [Aromatoleum aromaticum EbN1]
gi|56314230|emb|CAI08875.1| NADH dehydrogenase I , chain L [Aromatoleum aromaticum EbN1]
Length = 673
Score = 342 bits (876), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 171/274 (62%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY++P AI ANLKAF++NR
Sbjct: 134 MSNNFLQLFFGWEAVGLVSYLLIGFWYERPTAIYANLKAFMVNRVGDFGFLLGIGLIAVY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 194 AGSLDYAEVFAKAGELAAQDMAVTGWPLITAICICLFIGAMGKSAQVPLHVWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+ ALS +L IGA TA FMG LGI+QNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVARMSPLFELSDVALSFVLVIGATTALFMGFLGIVQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LGVSAY+ ++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 314 VIAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMP+T TSL+G L+L+G PFF+GFYSKD
Sbjct: 374 GLWKYMPVTWFTSLLGSLALIGFPFFAGFYSKDS 407
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 133/275 (48%), Gaps = 26/275 (9%)
Query: 296 FEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSL--LMLISMIYLYYISNKSFNI-- 350
+EA + +++IG W + YA +K F+ +G L+ I +I +Y S +
Sbjct: 145 WEAVGLVSYLLIGFWYERPTAIYANLKAFMVNRVGDFGFLLGIGLIAVYAGSLDYAEVFA 204
Query: 351 ----LSWHQLSITKIEQIWLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSV 400
L+ +++T W IT FI K P+H WLPD+ +E PT ++
Sbjct: 205 KAGELAAQDMAVTG----WPLITAICICLFIGAMGKSAQVPLHVWLPDS-MEGPTPISAL 259
Query: 401 ILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAY 460
I AA M+ G + + R S P+F + S ++ + + +++ + +VQ DIK++IAY
Sbjct: 260 IHAATMVTAGIFMVARMS-PLFELSDVALS-FVLVIGATTALFMGFLGIVQNDIKRVIAY 317
Query: 461 SSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGG 519
S+++ +G++T+ L + A+ +++HA + +F+ G + + + N GG
Sbjct: 318 STLSQLGYMTVA---LGVSAYSAAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGG 374
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
+ +P ++ SLA P +GF + II
Sbjct: 375 LWKYMPVTWFTSLLGSLALIGFPFFAGFYSKDSII 409
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 140/316 (44%), Gaps = 22/316 (6%)
Query: 575 SAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIK 634
Y S +F ++++ NN L ++ G E + L +LI + A +K
Sbjct: 112 DPGYQRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYERPTAIYANLK 171
Query: 635 YFILGILSSGFMLYGISILYGITGTLELQSIF-NVIKLNNINCSVLALSLLLII-----V 688
F++ + L GI ++ G+L+ +F +L + +V L+ I +
Sbjct: 172 AFMVNRVGDFGFLLGIGLIAVYAGSLDYAEVFAKAGELAAQDMAVTGWPLITAICICLFI 231
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQK 747
G K P H+W+PD +G + I L+ + T + ++ R+ L L +
Sbjct: 232 GAMGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDVALSF 289
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
+L+I A +L +G + I Q + KR+IAYS+++ +G M +++ S + +F+
Sbjct: 290 VLVIGATTALFMGFL-GIVQNDIKRVIAYSTLSQLGYM---TVALGVSAYSAAVFHLMTH 345
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
F + + LGA VII + ++ ++ GL + P ++ +L GF
Sbjct: 346 AFFKALLF----LGAGSVIIGMHHD-----QDMRNMGGLWKYMPVTWFTSLLGSLALIGF 396
Query: 868 PPTIGFYAKFFIFEKI 883
P GFY+K I E +
Sbjct: 397 PFFAGFYSKDSIIEAV 412
>gi|320353970|ref|YP_004195309.1| NADH dehydrogenase subunit M [Desulfobulbus propionicus DSM 2032]
gi|320122472|gb|ADW18018.1| NADH dehydrogenase subunit M [Desulfobulbus propionicus DSM 2032]
Length = 501
Score = 342 bits (876), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 186/365 (50%), Positives = 261/365 (71%), Gaps = 1/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI NI Y LGIDG+S+ F+ LTA ITL+ +L+S + I K+ E+ A L+L G ++G
Sbjct: 68 WISTLNINYSLGIDGISILFLLLTALITLLSVLVSWEAIHDKVQEFFVALLLLEGAMMGV 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
FCALD LFYIF+EA LIP+F+IIG WGG NR YA +KFFLYTL+GSLLML+ +I LY
Sbjct: 128 FCALDFFLFYIFWEAMLIPMFLIIGIWGGPNRIYATVKFFLYTLVGSLLMLVGIILLYQN 187
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+F+IL + + Q+ LF FF AFA+K+P+WP+HTWLPDAH EAP GSVILA
Sbjct: 188 GGHTFDILKLAGQNYSLKLQLILFWAFFAAFAVKVPMWPVHTWLPDAHTEAPAAGSVILA 247
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
+++K+G YG LRFSLPI P+A+ ++ LS+I+I+Y ++I + Q D+K+LIAYSS+
Sbjct: 248 GVLIKMGAYGFLRFSLPILPEATQQMLVPMLVLSVIAIVYGAIICLAQTDLKRLIAYSSV 307
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFVTLG+F L + ++GAI+QMI+H +++ A+F++IG +Y + TR IS +GG+
Sbjct: 308 SHMGFVTLGLFALNQRGLEGAILQMINHGVVTGALFLAIGMIYERTHTREISAYGGLATT 367
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F+ FF++F+LA LPGT+GFIGEF+I+L + V+ ++ LI A Y L L
Sbjct: 368 MPVFAGFFLLFTLAAVGLPGTNGFIGEFLILLGGFERAPWAAVVAASGLILGAWYMLWLY 427
Query: 584 KNIIF 588
+ I F
Sbjct: 428 QRIFF 432
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFI 107
K +P+HTWLPD+ A ++I A ++ G + R S P+ E + L +L +
Sbjct: 221 KVPMWPVHTWLPDAHTEAPAAGSVILAGVLIKMGAYGFLRFSLPILPEATQQMLVPMLVL 280
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFKA 164
I + ++ + Q D+KR+IAYS++S +G++T+G L +I ++ H
Sbjct: 281 SVIAIVYGAIICLAQTDLKRLIAYSSVSHMGFVTLGLFALNQRGLEGAILQMINHGVVTG 340
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL+ G +I H ++I GGL MP+ L+ L+ VG P +GF +
Sbjct: 341 ALFLAIG-MIYERTHTREISAYGGLATTMPVFAGFFLLFTLAAVGLPGTNGFIGE 394
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 24/280 (8%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + I N I+ A +K+F+ ++ S ML GI +LY G F+++
Sbjct: 144 LIPMFLIIGIWGGPNRIY---ATVKFFLYTLVGSLLMLVGIILLYQNGG-----HTFDIL 195
Query: 670 KLNNINCSVLALSLLLIIVGLS---FKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLS 725
KL N S L L L+L + K+ + P H W+PD + A +++L+ K+
Sbjct: 196 KLAGQNYS-LKLQLILFWAFFAAFAVKVPMWPVHTWLPDAHTEAPAAGSVILAGVLIKMG 254
Query: 726 LFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM 785
+ + R + L +L+L++ +++ G + + Q + KR+IAYSS++HMG +
Sbjct: 255 AYGFL-RFSLPILPEATQQMLVPMLVLSVIAIVYGAIICLAQTDLKRLIAYSSVSHMGFV 313
Query: 786 LFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIG 845
+ ++ I + G ++T A+ A G+I T E+ + G
Sbjct: 314 TLGLFALNQRGLEGAILQMINHG---VVTG--ALFLAIGMI-----YERTHTREISAYGG 363
Query: 846 LHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
L P A ++F + G P T GF +F I FE
Sbjct: 364 LATTMPVFAGFFLLFTLAAVGLPGTNGFIGEFLILLGGFE 403
>gi|416942143|ref|ZP_11934613.1| NADH:ubiquinone oxidoreductase subunit L, partial [Burkholderia sp.
TJI49]
gi|325524301|gb|EGD02413.1| NADH:ubiquinone oxidoreductase subunit L [Burkholderia sp. TJI49]
Length = 572
Score = 342 bits (876), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|167585983|ref|ZP_02378371.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia ubonensis Bu]
Length = 684
Score = 342 bits (876), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS + IGAITA FMG LGIIQNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFVTVIGAITALFMGFLGIIQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVALFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLLGSLALIGTPFFSGFYSKDS 409
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FVTVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVALF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + I N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-EAVKESHLAG 421
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 136/311 (43%), Gaps = 28/311 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFVTVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVALFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKIFETQ 887
I E + E+
Sbjct: 408 DSIIEAVKESH 418
>gi|167375203|gb|ABZ79355.1| NADH dehydrogenase subunit 4 [Bambusa oldhamii]
gi|196052308|gb|ABZ79357.2| NADH dehydrogenase subunit 4 [Phyllostachys edulis]
Length = 495
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 257/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I IL+ + EY+ AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICILVGWSGMRSFGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G L + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 27/253 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGN---NLLSIYLG 607
F +IL+ CI V S F Y I F++ + +MI+ +LL Y+
Sbjct: 92 FFVILTTFLIPICILVGWSGMRSFGKEYI------IAFLICEFLMIAVFCMLDLLLFYVF 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 FESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIISIK 793
HM L+ + S+
Sbjct: 315 HMNLVTIGMFSLN 327
>gi|120609961|ref|YP_969639.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Acidovorax citrulli AAC00-1]
gi|120588425|gb|ABM31865.1| NADH dehydrogenase subunit L [Acidovorax citrulli AAC00-1]
Length = 678
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTLNYGEIFARSGELGTIGFPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ IL IGAITA FMG LG+IQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFILVIGAITALFMGFLGMIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 AVRKYMPITWITSLLGSLALIGMPLFSGFYSKDS 415
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 13/197 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + M+Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFILVIGAITALFMGFLGMIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I G + +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGAVRKYMPITWITSLLGSLA 400
Query: 538 NCSLPGTSGFIGEFMII 554
+P SGF + II
Sbjct: 401 LIGMPLFSGFYSKDSII 417
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 146/308 (47%), Gaps = 24/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF I + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYTGTLNYGEIFARSGELGTIGFPGTDWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDTALNF--ILVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFLGMI-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ + + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGAVRKYMPITWITSLLGSLALIGMPLFSGFYSKDS 415
Query: 879 IFEKIFET 886
I E + +
Sbjct: 416 IIEAVHAS 423
>gi|44888246|sp|P93313.2|NU4M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName:
Full=NADH dehydrogenase subunit 4
Length = 495
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/366 (50%), Positives = 255/366 (69%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+F E+ LIP+FIIIG WG R AA +FFLYTL+GSL ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LK G YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFSFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 18/199 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ I + + L ++ + K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLS--TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+LL T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKFGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIIS 791
+IAYSS+AHM L+ + S
Sbjct: 307 IIAYSSVAHMNLVTIGMFS 325
>gi|222110097|ref|YP_002552361.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Acidovorax ebreus TPSY]
gi|221729541|gb|ACM32361.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Acidovorax ebreus TPSY]
Length = 671
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++K AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKQSAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 AGTFNYSEIFAKSGELGAIGFPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ IL IGAITA FMG LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFILVIGAITALFMGFLGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 GVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 13/197 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 286 -PLF-ELSDTALNFILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 340
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I GG+ +P + ++ SLA
Sbjct: 341 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLA 400
Query: 538 NCSLPGTSGFIGEFMII 554
P SGF + II
Sbjct: 401 LIGTPLFSGFYSKDSII 417
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 144/305 (47%), Gaps = 24/305 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKQSAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ GT IF I + ++ + + + +G K P
Sbjct: 192 IL-GIGLIAAYAGTFNYSEIFAKSGELGAIGFPGTDWMLITVICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +L
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDTALNF--ILVIGAITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 415
Query: 879 IFEKI 883
I E +
Sbjct: 416 IIEAV 420
>gi|409440006|ref|ZP_11267038.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Rhizobium
mesoamericanum STM3625]
gi|408748556|emb|CCM78219.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Rhizobium
mesoamericanum STM3625]
Length = 490
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 248/367 (67%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+++ W+ I Y GIDG+S F+ LT + + +L S + I +K+ +M + L + L
Sbjct: 62 ERRPWVPALGINYAFGIDGISALFVFLTTLLGSVSVLASWVAIDRKVKAFMISLLAMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L L+ +I
Sbjct: 122 MLGVFLALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSVLFLVGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ K+F+IL + Q WLF F IAFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFSGGKTFDILVLMTQHLPFATQSWLFFAFLIAFAVKVPMVPLHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++++Y L+A+ Q D KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMMALSALAVVYGGLLALAQDDFKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + +R I ++GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGVTTGALFLFVGLIYERTHSRSIGDYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ V P ++ F +F L++ +LPGT+ F+GE +++ N IG + + AAY
Sbjct: 362 LMKVAPIYTGFLALFVLSSMALPGTNSFVGELLVLSGGFAANLIIGAASIPGALLGAAYL 421
Query: 580 LCLSKNI 586
L + + +
Sbjct: 422 LGMYRKV 428
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K PLHTWLPD+ ++ PT A ++I A ++ G + R S P+ E S ++++
Sbjct: 219 KVPMVPLHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMMA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D K+++AYS++S +G++T+G L + SI + H
Sbjct: 278 LSALAVVYGGLLALAQDDFKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H++ I + GGL K PI
Sbjct: 338 GALFLFVG-LIYERTHSRSIGDYGGLMKVAPI 368
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G F+++ L + S L ++
Sbjct: 160 AAFKFFLYTLAGSVLFLVGVIVLYFSGG-----KTFDILVLMTQHLPFATQSWLFFAFLI 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPLHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASVYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
+++ L+ +++ G + A+ Q +FK+++AYSSI+HMG + I ++
Sbjct: 274 LMMALSALAVVYGGLLALAQDDFKKLVAYSSISHMGFVTLGIFAL 318
>gi|186476753|ref|YP_001858223.1| NADH dehydrogenase subunit L [Burkholderia phymatum STM815]
gi|184193212|gb|ACC71177.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia phymatum STM815]
Length = 689
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFLVNRVGDFGFILGIGLILAY 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 GGSMNYGDVFAKSHELASLSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS++ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVTRMSPLFELSDSALSFITVIGAITALFMGFLGIVQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 377 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 410
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 230 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 287
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 288 SALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 343
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 344 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 403
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 404 GFYSKDSII-DAVKLSHLPG 422
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 135/304 (44%), Gaps = 22/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K F++ + GF
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFLVNRVGDFGF 186
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ G++ +F + + +L ++ + + +G K P
Sbjct: 187 IL-GIGLILAYGGSMNYGDVFAKSHELASLSFPGTDWGLLTVACICLFIGAMGKSAQFPL 245
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L + + ++ + +
Sbjct: 246 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDSALSFITVIGAITALF 303
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 304 MGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF---- 356
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P + +I +L G P GFY+K I
Sbjct: 357 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSKDSI 411
Query: 880 FEKI 883
+ +
Sbjct: 412 IDAV 415
>gi|416958762|ref|ZP_11936093.1| proton-translocating NADH-quinone oxidoreductase, chain M, partial
[Burkholderia sp. TJI49]
gi|325522322|gb|EGD00934.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Burkholderia sp. TJI49]
Length = 399
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 247/324 (76%), Gaps = 3/324 (0%)
Query: 265 KLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFL 324
++A+Y ++FLILSGL++G F A DG+LF+IFFEATLIP++++IGTWG +R +AA+KFF
Sbjct: 1 RVAQYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRIHAAVKFFF 60
Query: 325 YTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMH 384
+ GSLL+L++++YLY S+ +F++ W L + Q+ +F+ FF AFA+K+P+WP+H
Sbjct: 61 ISFAGSLLLLMAILYLYAKSH-TFDMAVWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVH 119
Query: 385 TWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYI 444
TWL D + + PT +++L MLKLG YG LRF+LPI PDAS++ + +I+LSL +I+Y
Sbjct: 120 TWLRDVYTDGPTGAALMLG--MLKLGGYGFLRFALPITPDASHFLAPAVISLSLFAIVYA 177
Query: 445 SLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGF 504
SL+A+ Q D+ KL+AYS++AHMG VTLG+F+ +I ++GAI+Q++S+ ++ AM + +
Sbjct: 178 SLVALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSV 237
Query: 505 LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCI 564
L ++ K R I+ +GG+ NV+P F++F ++FS+AN LPGTSGF+GEFM+I+ A++ NF I
Sbjct: 238 LVDRTKQREIAAYGGVANVMPRFAIFVLLFSMANVGLPGTSGFVGEFMVIMGAIRLNFWI 297
Query: 565 GVLTSTALIFSAAYSLCLSKNIIF 588
G L + LIFSA+Y+L + K ++F
Sbjct: 298 GALAALTLIFSASYTLWMLKRVVF 321
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 57/295 (19%)
Query: 604 IYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQ 663
I+ L+ L L + +++ I AA+K+F + S +L I LY + T ++
Sbjct: 30 IFFEATLIPLYLLIGTWGREHRI---HAAVKFFFISFAGSLLLLMAILYLYAKSHTFDMA 86
Query: 664 SIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ----GASIIITLL-- 717
V + + + L L + K+ + P H W+ DVY GA++++ +L
Sbjct: 87 ----VWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALMLGMLKL 142
Query: 718 ---------LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
L TP S F L P VI+ L++F+++ ++ A+ Q
Sbjct: 143 GGYGFLRFALPITPDASHF----------LAPAVIS-------LSLFAIVYASLVALAQT 185
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN--SCDSGLFYIITYIFAILGAFGVI 826
+ +++AYS++AHMG++ L +FN + + +++Y F G +
Sbjct: 186 DLGKLLAYSTVAHMGIVTL----------GLFLFNRIGVEGAIVQLVSYGFVA----GAM 231
Query: 827 ILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+L + ++T + +I + G+ P A+ +++F + G P T GF +F +
Sbjct: 232 LLCVSVLVDRTKQREIAAYGGVANVMPRFAIFVLLFSMANVGLPGTSGFVGEFMV 286
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGI 84
W L L FL K +P+HTWL D +GPT A+ ++ M+ G
Sbjct: 88 WRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDGPTGAALML---GMLKLGG 144
Query: 85 FMITRMS-PLFE-----LSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLG 138
+ R + P+ L+ +S+ LF AI + L+ + Q D+ +++AYST++ +G
Sbjct: 145 YGFLRFALPITPDASHFLAPAVISLSLF--AIV--YASLVALAQTDLGKLLAYSTVAHMG 200
Query: 139 YMTVGL------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
+T+GL GV +I L+++ F + L S++++ ++I GG+
Sbjct: 201 IVTLGLFLFNRIGVEG---AIVQLVSYGFVAGAMLLCV-SVLVDRTKQREIAAYGGVANV 256
Query: 193 MPITCITSLIGLLSLVGAPFFSGFYSK 219
MP I L+ ++ VG P SGF +
Sbjct: 257 MPRFAIFVLLFSMANVGLPGTSGFVGE 283
>gi|388569724|ref|ZP_10156111.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Hydrogenophaga sp. PBC]
gi|388263014|gb|EIK88617.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Hydrogenophaga sp. PBC]
Length = 670
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 196/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 141 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFLVNRVGDFGFILGIGLIVAY 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 TGTMNYSEIFAKAGELGGLGFPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPL+ELS+TAL+ ++ IGAITA FMG LGIIQNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVARMSPLYELSDTALNFVMIIGAITALFMGFLGIIQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL+AGS+I+ + HNQDIR MG
Sbjct: 321 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIMGLHHNQDIRWMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
G+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 381 GVRKYMPITWITSLLGTLALIGTPLFSGFYSKDS 414
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 226 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 284
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S N ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 285 -PLY-ELSDTALNFVMIIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGA 339
Query: 479 ISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F++ G + + I GG+ +P + ++ +LA
Sbjct: 340 SAYSVAVFHLMTHAFFKALLFLAAGSVIMGLHHNQDIRWMGGVRKYMPITWITSLLGTLA 399
Query: 538 NCSLPGTSGFIGEFMIILSAVKFN 561
P SGF + II AV F+
Sbjct: 400 LIGTPLFSGFYSKDSII-EAVHFS 422
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 145/305 (47%), Gaps = 24/305 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 131 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKAFLVNRVGDFGF 190
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGT+ IF + + ++ + + + +G K P
Sbjct: 191 IL-GIGLIVAYTGTMNYSEIFAKAGELGGLGFPGTDWMLITVICICLFIGAMGKSAQFPL 249
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ +++I AI +L
Sbjct: 250 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLYELSDTALNF--VMIIGAITALF 307
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 308 MGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 360
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
L A VI+ L +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 361 -LAAGSVIMGLHHN-----QDIRWMGGVRKYMPITWITSLLGTLALIGTPLFSGFYSKDS 414
Query: 879 IFEKI 883
I E +
Sbjct: 415 IIEAV 419
>gi|38605710|sp|P27572.2|NU4M_WHEAT RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName:
Full=NADH dehydrogenase subunit 4
Length = 495
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 257/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I IL+ + EY+ AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICILVGWSGMRSFGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G L + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 27/253 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGN---NLLSIYLG 607
F +IL+ CI V S F Y I F++ + +MI+ +LL Y+
Sbjct: 92 FFVILTTFLIPICILVGWSGMRSFGKEYI------IAFLICEFLMIAVFCMLDLLLFYVF 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 FESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIISIK 793
HM L+ + S+
Sbjct: 315 HMNLVTIGMFSLN 327
>gi|167836060|ref|ZP_02462943.1| NADH dehydrogenase subunit L [Burkholderia thailandensis MSMB43]
gi|424902732|ref|ZP_18326248.1| NADH dehydrogenase subunit L [Burkholderia thailandensis MSMB43]
gi|390933107|gb|EIP90507.1| NADH dehydrogenase subunit L [Burkholderia thailandensis MSMB43]
Length = 682
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLNFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 140/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIF----NVIKLN--NINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + LN +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELASLNFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|387886235|ref|YP_006316534.1| NADH dehydrogenase (quinone) [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871051|gb|AFJ43058.1| NADH dehydrogenase (quinone) [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 529
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/470 (38%), Positives = 286/470 (60%), Gaps = 41/470 (8%)
Query: 171 GSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYF- 229
G ++ +++ + + +C+T + + + + S + W F
Sbjct: 18 GGFVVLATRTKELHGDAARWVALVFSCLTLALCIPLVASFDYSSSAMQFQESAKWFKVFG 77
Query: 230 --NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCA 286
+IYY LG+DG S+ FI LT+F TL+I+L + IK K+ +YM+ FLI GL G FCA
Sbjct: 78 MHDIYYGLGVDGFSVLFIVLTSFATLVIVLAAWTSIKIKVRQYMAIFLITCGLTNGVFCA 137
Query: 287 LDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY----- 341
D +L+Y+F+EA LIP + IG WGG N++YAA+K+F+YT GS+ +L +++Y+
Sbjct: 138 TDSILYYVFWEALLIPTCLGIGIWGGKNKAYAAVKYFMYTFFGSVFLLAAILYIQTRVAA 197
Query: 342 -----YISNKSFNILSW-----------HQLSITKIEQIWLFITFFIAFAIKIPIWPMHT 385
+S +++I ++ + T Q +F FF+AFA+KIP+WP H+
Sbjct: 198 SPVDVLVSADTYSIQNFIARAAQSNGLADSVKFTLTAQWLIFGAFFLAFAVKIPMWPFHS 257
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAP GSVILAA+MLKLG YG LRF++P+ P + ++I +SLI+I+Y+
Sbjct: 258 WLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPKVTASLEYVLIIMSLIAIVYVG 317
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFML--------------TKISIQGAIIQMISH 491
++A+ Q D+K+LIAYSSI+HMG VTLG+F + ++++QGA+ QMI+H
Sbjct: 318 VVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQLALQGAVFQMIAH 377
Query: 492 ALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
A S MFI IG+LY +M TR IS+F G+ +P F++FF++F +AN LP TSGF+GEF
Sbjct: 378 AFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFAMFFLLFCMANVGLPSTSGFVGEF 437
Query: 552 MIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNL 601
MI+L+ +++ I ++ L+ + Y+L + K + F G+++ NL
Sbjct: 438 MILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFF--GEVVSTQVANL 485
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFIG 108
K +P H+WLPD+ ++I AA M+ G + R + P+ +L +L I
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPKVTASLEYVLIIM 308
Query: 109 AITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG-------------LGVS----AYT 150
++ A ++G++ + Q D+KR+IAYS++S +G +T+G LG + A
Sbjct: 309 SLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQLALQ 368
Query: 151 VSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGA 210
++F ++ HAF +F+ G + + M H ++I + G+ K MPI + L+ ++ VG
Sbjct: 369 GAVFQMIAHAFSSGGMFIGIGYLYLRM-HTREISDFSGVAKTMPIFAMFFLLFCMANVGL 427
Query: 211 PFFSGFYSK 219
P SGF +
Sbjct: 428 PSTSGFVGE 436
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 693 KLGISPFHMWVPDVYQ----GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
K+ + PFH W+PD + G S+I+ L+ KL + + R I L + + + +
Sbjct: 249 KIPMWPFHSWLPDAHSEAPAGGSVILAALML---KLGAYGFL-RFAIPMLPKVTASLEYV 304
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLM---LFSIISIKTSHNNLIIFN-- 803
L+I+++ +++ V A+ Q + KR+IAYSSI+HMGL+ LFSI +K++ L N
Sbjct: 305 LIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPVLGTTNAQ 364
Query: 804 -SCDSGLFYIITYIFAILGAF---GVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMI 859
+ +F +I + F+ G F G + L + T E+ F G+ + P A+ ++
Sbjct: 365 LALQGAVFQMIAHAFSSGGMFIGIGYLYLRMH-----TREISDFSGVAKTMPIFAMFFLL 419
Query: 860 FMFSLAGFPPTIGFYAKFFIFEKIFE 885
F + G P T GF +F I +F+
Sbjct: 420 FCMANVGLPSTSGFVGEFMILLAVFQ 445
>gi|170696388|ref|ZP_02887517.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia graminis C4D1M]
gi|170138716|gb|EDT06915.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia graminis C4D1M]
Length = 692
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF+Y + AI AN+KAF++NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYYTRESAIYANMKAFIVNRVGDFGFLLGIGLLFAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS++ALS + IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDSALSFVTVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V +FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVGVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + +
Sbjct: 287 SALS-FVTVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVGVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K FI+ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYYTRESAIYANMKAFIVNRVGDFGF 185
Query: 647 LYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFH 700
L GI +L+ G++ +F + + +L ++ + + +G K P H
Sbjct: 186 LLGIGLLFAFAGSMNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLH 245
Query: 701 MWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIG 760
+W+PD +G + I L+ + T + ++ R+ L L + + ++ + +
Sbjct: 246 VWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDSALSFVTVIGAITALFM 303
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF--- 817
I Q + KR++AYS+++ +G M +++ S + G+F+++T+ F
Sbjct: 304 GFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVS--------AYPVGVFHLMTHAFFKA 352
Query: 818 -AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + +I +L G P GFY+K
Sbjct: 353 LLFLGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|326316110|ref|YP_004233782.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323372946|gb|ADX45215.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 670
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW++KP AI AN+KAFL+NR
Sbjct: 134 MSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 194 TGTLNYGEIFAKSGELGTIGFPGTNWMLITVICICLFIGAMGKSAQFPLHVWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TAL+ IL IGAITA FMG LG+IQNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALNFILVIGAITALFMGFLGMIQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 314 VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 374 AVRKYMPITWITSLLGSLALIGMPLFSGFYSKDS 407
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 13/197 (6%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 219 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 277
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P+F + S N I+ + I+ +++ + M+Q DIK+++AYS+++ +G++T+ L
Sbjct: 278 -PLF-ELSDTALNFILVIGAITALFMGFLGMIQNDIKRVVAYSTLSQLGYMTVA---LGA 332
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ A+ +++HA + +F+ G + M + I G + +P + ++ SLA
Sbjct: 333 SAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGAVRKYMPITWITSLLGSLA 392
Query: 538 NCSLPGTSGFIGEFMII 554
+P SGF + II
Sbjct: 393 LIGMPLFSGFYSKDSII 409
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 146/308 (47%), Gaps = 24/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 124 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGF 183
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF I N ++ + + + +G K P
Sbjct: 184 IL-GIGLIAAYTGTLNYGEIFAKSGELGTIGFPGTNWMLITVICICLFIGAMGKSAQFPL 242
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +L
Sbjct: 243 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFELSDTALNF--ILVIGAITALF 300
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 301 MGFLGMI-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 353
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ + + P + ++ +L G P GFY+K
Sbjct: 354 -LGAGSVIMGMHHN-----QDIRWMGAVRKYMPITWITSLLGSLALIGMPLFSGFYSKDS 407
Query: 879 IFEKIFET 886
I E + +
Sbjct: 408 IIEAVHAS 415
>gi|418553942|ref|ZP_13118742.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
354e]
gi|385370889|gb|EIF76111.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
354e]
Length = 679
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|83720737|ref|YP_441625.1| NADH dehydrogenase subunit L [Burkholderia thailandensis E264]
gi|167580433|ref|ZP_02373307.1| NADH dehydrogenase subunit L [Burkholderia thailandensis TXDOH]
gi|167618542|ref|ZP_02387173.1| NADH dehydrogenase subunit L [Burkholderia thailandensis Bt4]
gi|257139679|ref|ZP_05587941.1| NADH dehydrogenase subunit L [Burkholderia thailandensis E264]
gi|83654562|gb|ABC38625.1| NADH dehydrogenase I, L subunit [Burkholderia thailandensis E264]
Length = 682
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELAALNFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELAALNFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|264677209|ref|YP_003277115.1| proton-translocating NADH-quinone [Comamonas testosteroni CNB-2]
gi|262207721|gb|ACY31819.1| proton-translocating NADH-quinone [Comamonas testosteroni CNB-2]
Length = 684
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 196/273 (71%), Gaps = 53/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF+Y KP AI ANLKAFL+NR
Sbjct: 148 MSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANLKAFLVNRVGDFGFILGIGLIAAY 207
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 208 TGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPLHAWLPDSMEGP 267
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPL+ELS+ AL+ IL IG+ITA FMG+LGIIQNDIKR
Sbjct: 268 TPISALIHAATMVTAGIFMVSRMSPLYELSDVALNFILVIGSITALFMGILGIIQNDIKR 327
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMT+ LGVSAY+VS+FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 328 VIAYSTLSQLGYMTIALGVSAYSVSVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 387
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
G+ KYMPIT IT L+G L+L+G PFFSGFYSKD
Sbjct: 388 GVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 420
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 233 WLLVTVTAICLFIGAMGKSAQFPLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 291
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S N I+ + I+ +++ ++ ++Q DIK++IAYS+++ +G++T+ + ++
Sbjct: 292 -PLY-ELSDVALNFILVIGSITALFMGILGIIQNDIKRVIAYSTLSQLGYMTIAL-GVSA 348
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
S+ ++ +++HA + +F+ G + M + I GG+ +P + +I F L
Sbjct: 349 YSV--SVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMP---ITWITFLLG 403
Query: 538 NCSLPGTSGFIG 549
N +L GT F G
Sbjct: 404 NLALIGTPFFSG 415
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 148/309 (47%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI + A +K F++ + GF
Sbjct: 138 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANLKAFLVNRVGDFGF 197
Query: 646 MLYGISILYGITGTLELQSIFNVI------KLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF + +L ++ ++ + + +G K P
Sbjct: 198 IL-GIGLIAAYTGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPL 256
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R+ + L + +N+ IL+I +I +L
Sbjct: 257 HAWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLYELSDVALNF--ILVIGSITALF 314
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR+IAYS+++ +G M I++ S ++ +F+ F + +
Sbjct: 315 MG-ILGIIQNDIKRVIAYSTLSQLGYM---TIALGVSAYSVSVFHLMTHAFFKALLF--- 367
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 368 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITFLLGNLALIGTPFFSGFYSKDA 421
Query: 879 IFEKIFETQ 887
I E + +
Sbjct: 422 IIEAVHASN 430
>gi|167718856|ref|ZP_02402092.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei DM98]
Length = 679
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|126439233|ref|YP_001058349.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 668]
gi|134283883|ref|ZP_01770579.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei 305]
gi|167737864|ref|ZP_02410638.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 14]
gi|167823463|ref|ZP_02454934.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 9]
gi|167845015|ref|ZP_02470523.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei B7210]
gi|167918271|ref|ZP_02505362.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei BCC215]
gi|217419873|ref|ZP_03451379.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei 576]
gi|226195409|ref|ZP_03790998.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei Pakistan
9]
gi|237811593|ref|YP_002896044.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei MSHR346]
gi|254181176|ref|ZP_04887773.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
1655]
gi|254195022|ref|ZP_04901451.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
S13]
gi|403518015|ref|YP_006652148.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei BPC006]
gi|418389907|ref|ZP_12967726.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
354a]
gi|126218726|gb|ABN82232.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
668]
gi|134244672|gb|EBA44770.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei 305]
gi|169651770|gb|EDS84463.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
S13]
gi|184211714|gb|EDU08757.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
1655]
gi|217397177|gb|EEC37193.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei 576]
gi|225932611|gb|EEH28609.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei Pakistan
9]
gi|237503983|gb|ACQ96301.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei MSHR346]
gi|385375899|gb|EIF80633.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
354a]
gi|403073658|gb|AFR15238.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei BPC006]
Length = 679
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|53718858|ref|YP_107844.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei K96243]
gi|76810034|ref|YP_332855.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 1710b]
gi|126451636|ref|YP_001065588.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 1106a]
gi|167815047|ref|ZP_02446727.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 91]
gi|167902002|ref|ZP_02489207.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei NCTC 13177]
gi|167910238|ref|ZP_02497329.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 112]
gi|242317547|ref|ZP_04816563.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei 1106b]
gi|254190539|ref|ZP_04897046.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254260911|ref|ZP_04951965.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
1710a]
gi|254298544|ref|ZP_04965996.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
406e]
gi|386862383|ref|YP_006275332.1| NADH-ubiquinone oxidoreductase subunit L [Burkholderia pseudomallei
1026b]
gi|418538020|ref|ZP_13103648.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
1026a]
gi|418541516|ref|ZP_13106995.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
1258a]
gi|418547760|ref|ZP_13112899.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
1258b]
gi|52209272|emb|CAH35217.1| NADH-ubiquinone oxidoreductase I chain L [Burkholderia pseudomallei
K96243]
gi|76579487|gb|ABA48962.1| NADH-ubiquinone oxidoreductase I chain L [Burkholderia pseudomallei
1710b]
gi|126225278|gb|ABN88818.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei 1106a]
gi|157808082|gb|EDO85252.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
406e]
gi|157938214|gb|EDO93884.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|242140786|gb|EES27188.1| NADH dehydrogenase I, L subunit [Burkholderia pseudomallei 1106b]
gi|254219600|gb|EET08984.1| NADH-quinone oxidoreductase, L subunit [Burkholderia pseudomallei
1710a]
gi|385348780|gb|EIF55376.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
1026a]
gi|385357746|gb|EIF63783.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
1258a]
gi|385359899|gb|EIF65846.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
1258b]
gi|385659511|gb|AFI66934.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia pseudomallei
1026b]
Length = 679
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|171316314|ref|ZP_02905535.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia ambifaria MEX-5]
gi|171098540|gb|EDT43341.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia ambifaria MEX-5]
Length = 686
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVARMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|53725804|ref|YP_103423.1| NADH dehydrogenase subunit L [Burkholderia mallei ATCC 23344]
gi|67642181|ref|ZP_00440941.1| NADH-quinone oxidoreductase chain l (nadh dehydrogenasei, chain l)
(ndh-1, chain l) [Burkholderia mallei GB8 horse 4]
gi|121600044|ref|YP_992480.1| NADH dehydrogenase subunit L [Burkholderia mallei SAVP1]
gi|124385721|ref|YP_001026717.1| NADH dehydrogenase subunit L [Burkholderia mallei NCTC 10229]
gi|126448048|ref|YP_001079998.1| NADH dehydrogenase subunit L [Burkholderia mallei NCTC 10247]
gi|167000357|ref|ZP_02266175.1| NADH dehydrogenase I, L subunit [Burkholderia mallei PRL-20]
gi|254175434|ref|ZP_04882094.1| NADH dehydrogenase I, L subunit [Burkholderia mallei ATCC 10399]
gi|254202099|ref|ZP_04908462.1| NADH dehydrogenase I, L subunit [Burkholderia mallei FMH]
gi|254207429|ref|ZP_04913779.1| NADH dehydrogenase I, L subunit [Burkholderia mallei JHU]
gi|254359851|ref|ZP_04976121.1| NADH dehydrogenase I, L subunit [Burkholderia mallei 2002721280]
gi|52429227|gb|AAU49820.1| NADH dehydrogenase I, L subunit [Burkholderia mallei ATCC 23344]
gi|121228854|gb|ABM51372.1| NADH dehydrogenase I, L subunit [Burkholderia mallei SAVP1]
gi|124293741|gb|ABN03010.1| NADH dehydrogenase I, L subunit [Burkholderia mallei NCTC 10229]
gi|126240918|gb|ABO04011.1| NADH dehydrogenase I, L subunit [Burkholderia mallei NCTC 10247]
gi|147746346|gb|EDK53423.1| NADH dehydrogenase I, L subunit [Burkholderia mallei FMH]
gi|147751323|gb|EDK58390.1| NADH dehydrogenase I, L subunit [Burkholderia mallei JHU]
gi|148029091|gb|EDK86996.1| NADH dehydrogenase I, L subunit [Burkholderia mallei 2002721280]
gi|160696478|gb|EDP86448.1| NADH dehydrogenase I, L subunit [Burkholderia mallei ATCC 10399]
gi|238523277|gb|EEP86716.1| NADH-quinone oxidoreductase chain l (nadh dehydrogenasei, chain l)
(ndh-1, chain l) [Burkholderia mallei GB8 horse 4]
gi|243063691|gb|EES45877.1| NADH dehydrogenase I, L subunit [Burkholderia mallei PRL-20]
Length = 679
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|51473961|ref|YP_067718.1| NADH dehydrogenase subunit M [Rickettsia typhi str. Wilmington]
gi|383752737|ref|YP_005427837.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia typhi str.
TH1527]
gi|383843572|ref|YP_005424075.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia typhi str.
B9991CWPP]
gi|81389939|sp|Q68VV6.1|NUOM_RICTY RecName: Full=NADH-quinone oxidoreductase subunit M; AltName:
Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1
subunit M
gi|51460273|gb|AAU04236.1| NADH dehydrogenase (ubiquinone) subunit M [Rickettsia typhi str.
Wilmington]
gi|380759380|gb|AFE54615.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia typhi str.
TH1527]
gi|380760219|gb|AFE55453.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia typhi str.
B9991CWPP]
Length = 494
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/380 (48%), Positives = 264/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +GIDG++++F+ LT+F+TLI I+ S+ IKK + EY+ FL+
Sbjct: 67 YQFVERYTWLDKIGLEFHVGIDGIAIFFVVLTSFLTLICIIGSIFTIKKYIKEYLVCFLL 126
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF A++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 127 MESFCIGAFTAVNLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLL 186
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
++IY+Y SF++ L+ I Q L+ T FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 187 ALIYIYS-KIHSFDLTYILALTENIPLFAQKILWWTIFIAFAVKIPMIPFHTWLPDAHVQ 245
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P+ S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 246 APTSGSVILAGILLKLGSYGFLRVLLPLLPNVSQEFAIYVIYLSVIAIIYSSLVALAQKD 305
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IK++IAYSSIAHMG+VT+GIF T+ I GAI QM+SH ++SS++F+ +G LY ++ T+
Sbjct: 306 IKQMIAYSSIAHMGYVTIGIFSFTETGISGAIFQMLSHGVVSSSLFLIVGTLYERLHTKE 365
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L++ LP TSGFIGEF+ +L K N + + +I
Sbjct: 366 IAKYGGVASKMPVLATFFMITMLSSIGLPSTSGFIGEFLSLLGIYKVNVVAACIAALGII 425
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 426 LGAVYMLKLYKEVM--LGEI 443
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 14/177 (7%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR-MSPLFELSNTALSI-IL 105
K P HTWLPD+ ++ PT S ++ A ++ G + R + PL + +I ++
Sbjct: 228 VKIPMIPFHTWLPDAHVQAPTSGSVIL-AGILLKLGSYGFLRVLLPLLPNVSQEFAIYVI 286
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTH 159
++ I + L+ + Q DIK++IAYS+++ +GY+T+G+ G+S +IF +++H
Sbjct: 287 YLSVIAIIYSSLVALAQKDIKQMIAYSSIAHMGYVTIGIFSFTETGISG---AIFQMLSH 343
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +LS +G P SGF
Sbjct: 344 GVVSSSLFLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMITMLSSIGLPSTSGF 399
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 134/293 (45%), Gaps = 37/293 (12%)
Query: 597 SGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILY 654
+ NLL YL E + + + ++I N I+ AA+K+F+ S F L + +Y
Sbjct: 136 TAVNLLLFYLFFEAILVPMYIIIGVWGGDNRIY---AALKFFLYTFFGSVFFLLALIYIY 192
Query: 655 GITGTLELQSIFNVIKLNNINCSVLALSLL--LIIVGLSFKLGISPFHMWVPDVYQGASI 712
+ +L I + + N + A +L I + + K+ + PFH W+PD + A
Sbjct: 193 SKIHSFDLTYILALTE----NIPLFAQKILWWTIFIAFAVKIPMIPFHTWLPDAHVQAP- 247
Query: 713 IITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSA 764
T+ + L I+ +L ++ LLPL+ N + I L++ ++I ++ A
Sbjct: 248 -------TSGSVILAGILLKLGSYGFLRVLLPLLPNVSQEFAIYVIYLSVIAIIYSSLVA 300
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFG 824
+ Q + K+MIAYSSIAHMG + I S + + IF G+ + + +F I+G
Sbjct: 301 LAQKDIKQMIAYSSIAHMGYVTIGIFSFTETGISGAIFQMLSHGV--VSSSLFLIVGTL- 357
Query: 825 VIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M S G P T GF +F
Sbjct: 358 -------YERLHTKEIAKYGGVASKMPVLATFFMITMLSSIGLPSTSGFIGEF 403
>gi|22550342|ref|NP_689375.1| NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum]
gi|22417008|gb|AAM96607.1|AF494279_12 NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum]
Length = 485
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 179/366 (48%), Positives = 259/366 (70%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ + NI ++ GIDG+SL F+ LT F+ +L+ I K EY AFL+L ++
Sbjct: 67 WLSFSNINFYYGIDGISLLFLILTTFLVPSCLLVGWSSISKYQREYFVAFLVLEAFMLAV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LF++FFE+ LIP+FIIIG WG R AA +FFLYTL GS+ ML++++++Y+
Sbjct: 127 FCMLDVLLFFVFFESVLIPMFIIIGVWGSRQRKIRAAYQFFLYTLFGSVFMLLAILFIYF 186
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + ++ + + QI LFI FF +FA+KIP+ P+H WLP+AHVEAPT GSVIL
Sbjct: 187 QTGTT-DVQILYSTEWSTRRQILLFIAFFASFAVKIPMVPVHIWLPEAHVEAPTAGSVIL 245
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I+LKLG YGLLRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYSS
Sbjct: 246 AGILLKLGTYGLLRFSMPMFPEATAYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSS 305
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ TRL+ +GG+ +
Sbjct: 306 VAHMNFVTIGMFSLNVQGIEGSILLMLSHGLVSSALFLCVGALYDRHHTRLVKYYGGLCS 365
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P FS+ F+ F+L N SLPGTS F+GEF+I++ A + N I L + ++ AAYS+ L
Sbjct: 366 TMPIFSLIFLFFTLGNMSLPGTSSFVGEFLILVGAFQSNTSIATLAAIGMVLGAAYSIWL 425
Query: 583 SKNIIF 588
++F
Sbjct: 426 YNRVVF 431
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + + R S P+F + + ++
Sbjct: 220 KIPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGLLRFSMPMFPEATAYFTPFIYT 278
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L + Q D+K+IIAYS+++ + ++T+G L V SI +++H
Sbjct: 279 LSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNVQGIEGSILLMLSHGLVS 338
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSL---IGLLSLVGAPFFSG 215
+ LFL G+ + + H + ++ GGL MPI + L +G +SL G F G
Sbjct: 339 SALFLCVGA-LYDRHHTRLVKYYGGLCSTMPIFSLIFLFFTLGNMSLPGTSSFVG 392
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 28/265 (10%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA ++F+ + S FML I +Y TGT ++Q +++ S LL I
Sbjct: 161 RAAYQFFLYTLFGSVFMLLAILFIYFQTGTTDVQILYST------EWSTRRQILLFIAFF 214
Query: 690 LSF--KLGISPFHMWVPDVY-----QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV 742
SF K+ + P H+W+P+ + G+ I+ +LL KL + ++ R +
Sbjct: 215 ASFAVKIPMVPVHIWLPEAHVEAPTAGSVILAGILL----KLGTYGLL-RFSMPMFPEAT 269
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
+ + L++ ++I +++ + Q + K++IAYSS+AHM + + S+ I
Sbjct: 270 AYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNVQGIEGSIL 329
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL + + +F +GA L + + T + + GL P +LI + F
Sbjct: 330 LMLSHGL--VSSALFLCVGA------LYDR--HHTRLVKYYGGLCSTMPIFSLIFLFFTL 379
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQ 887
P T F +F I F++
Sbjct: 380 GNMSLPGTSSFVGEFLILVGAFQSN 404
>gi|383482025|ref|YP_005390940.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rhipicephali
str. 3-7-female6-CWPP]
gi|378934364|gb|AFC72867.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rhipicephali
str. 3-7-female6-CWPP]
Length = 493
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/380 (48%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFIERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLP AHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPYAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLP + ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPFHTWLPYAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ + PFH W+P + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPYAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>gi|167893556|ref|ZP_02480958.1| NADH dehydrogenase subunit L [Burkholderia pseudomallei 7894]
Length = 679
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGEVFAKRAELASLHFPGTQWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|407712818|ref|YP_006833383.1| NADH-quinone oxidoreductase subunit L [Burkholderia phenoliruptrix
BR3459a]
gi|407235002|gb|AFT85201.1| NADH-quinone oxidoreductase subunit L [Burkholderia phenoliruptrix
BR3459a]
Length = 689
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLFAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSLNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS++ALS + IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDSALSFVTVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V +FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVGVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
++ F +I I+ +++ + +VQ DIK+++AYS+++ +G++T+ L +
Sbjct: 287 SALSFVTVI---GAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVG 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + +I SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 139/311 (44%), Gaps = 36/311 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L+ G+L +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLFAFAGSLNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDSALSFVTVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + G+F+++T+
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVS--------AYPVGVFHLMTHA 348
Query: 817 F----AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
F LGA VII + ++ ++ GL + P + +I +L G P G
Sbjct: 349 FFKALLFLGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSG 403
Query: 873 FYAKFFIFEKI 883
FY+K I + +
Sbjct: 404 FYSKDSIIDAV 414
>gi|167569433|ref|ZP_02362307.1| NADH dehydrogenase subunit L [Burkholderia oklahomensis C6786]
Length = 682
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGDVFAKRAELASLHFPGTEWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGDVFAKRAELASLHFPGTEWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|374092022|gb|AEY83675.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Apotreubia
nana]
Length = 437
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/367 (49%), Positives = 256/367 (69%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ T F+T I IL+ +K EYM AF I I
Sbjct: 31 WLPYSNINFYIGIDGISLFFVISTTFLTPICILVGFYSVKSYKKEYMIAFFICESFPIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C+LD ++FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 SCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRRIKAAYQFFLYTLMGSLSMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILSKLGTYGFLRFSIPMFPEATLYFTPFIHTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M SH L+SSA F +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILPMSSHGLVSSAPFPCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P S F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYS
Sbjct: 329 STMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSPW 388
Query: 582 LSKNIIF 588
++F
Sbjct: 389 PYNRVVF 395
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K P+H WLP++ +E PT A ++I A + G + R S P+F + + I
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILSKLGTYGFLRFSIPMFPEATLYFTPFIHT 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI + +H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILPMSSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ F G++ K + ++ GGL MPI+ L L+ + P S F
Sbjct: 303 SAPFPCVGALYDRHK-TRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSF 354
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 22/294 (7%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S ML I ++ TGT
Sbjct: 95 DLLIFYVFFESVLIPMFIIIGVWGSRQRRIKAAYQFFLYTLMGSLSMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ ++ + L + S K+ + P H+W+P+ + A S+I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
+LS KL + + R I + + + L++ ++I +++ I Q + K++IA
Sbjct: 211 GILS---KLGTYGFL-RFSIPMFPEATLYFTPFIHTLSVIAIIYTSLTTIRQIDLKKIIA 266
Query: 776 YSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCN 835
YSS+AHM + + S+ I GL + + F +GA L + +
Sbjct: 267 YSSVAHMNFVTIGMFSLNIQGIEGSILPMSSHGL--VSSAPFPCVGA------LYDR--H 316
Query: 836 KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 317 KTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 370
>gi|323525447|ref|YP_004227600.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Burkholderia sp. CCGE1001]
gi|323382449|gb|ADX54540.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. CCGE1001]
Length = 689
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLFAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSLNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS++ALS + IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDSALSFVTVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V +FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVGVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
++ F +I I+ +++ + +VQ DIK+++AYS+++ +G++T+ L +
Sbjct: 287 SALSFVTVI---GAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVG 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + +I SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 139/311 (44%), Gaps = 36/311 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L+ G+L +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLFAFAGSLNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDSALSFVTVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + G+F+++T+
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVS--------AYPVGVFHLMTHA 348
Query: 817 F----AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
F LGA VII + ++ ++ GL + P + +I +L G P G
Sbjct: 349 FFKALLFLGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSG 403
Query: 873 FYAKFFIFEKI 883
FY+K I + +
Sbjct: 404 FYSKDSIIDAV 414
>gi|167562188|ref|ZP_02355104.1| NADH dehydrogenase subunit L [Burkholderia oklahomensis EO147]
Length = 682
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLILAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGDVFAKRAELASLHFPGTEWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 287 AALSF---ITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 340
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ +++HA + +F+ G + + + N GG+ +P + ++ SLA P
Sbjct: 341 VFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPF 400
Query: 544 TSGFIGEFMIILSAVKFNFCIG 565
SGF + II AVK + G
Sbjct: 401 FSGFYSKDSII-DAVKLSHLPG 421
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 138/312 (44%), Gaps = 38/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI ++ G++ +F + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLILAYAGSMNYGDVFAKRAELASLHFPGTEWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T + ++ R+ L L I +I
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSF------ITVI 295
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 296 GAITALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFK 351
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + LGA VII + ++ ++ GL + P + ++ +L G P
Sbjct: 352 ALLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 872 GFYAKFFIFEKI 883
GFY+K I + +
Sbjct: 403 GFYSKDSIIDAV 414
>gi|418530539|ref|ZP_13096462.1| proton-translocating NADH-quinone [Comamonas testosteroni ATCC
11996]
gi|371452258|gb|EHN65287.1| proton-translocating NADH-quinone [Comamonas testosteroni ATCC
11996]
Length = 670
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 196/273 (71%), Gaps = 53/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF+Y KP AI ANLKAFL+NR
Sbjct: 134 MSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANLKAFLVNRVGDFGFILGIGLIAAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 194 TGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPLHAWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPL+ELS+ AL+ IL IG+ITA FMG+LGIIQNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVSRMSPLYELSDVALNFILVIGSITALFMGILGIIQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMT+ LGVSAY+VS+FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 314 VIAYSTLSQLGYMTIALGVSAYSVSVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
G+ KYMPIT IT L+G L+L+G PFFSGFYSKD
Sbjct: 374 GVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 406
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 219 WLLVTVTAICLFIGAMGKSAQFPLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 277
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S N I+ + I+ +++ ++ ++Q DIK++IAYS+++ +G++T+ + ++
Sbjct: 278 -PLY-ELSDVALNFILVIGSITALFMGILGIIQNDIKRVIAYSTLSQLGYMTIAL-GVSA 334
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
S+ ++ +++HA + +F+ G + M + I GG+ +P + +I F L
Sbjct: 335 YSV--SVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMP---ITWITFLLG 389
Query: 538 NCSLPGTSGFIG 549
N +L GT F G
Sbjct: 390 NLALIGTPFFSG 401
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 148/309 (47%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI + A +K F++ + GF
Sbjct: 124 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANLKAFLVNRVGDFGF 183
Query: 646 MLYGISILYGITGTLELQSIFNVI------KLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF + +L ++ ++ + + +G K P
Sbjct: 184 IL-GIGLIAAYTGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPL 242
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R+ + L + +N+ IL+I +I +L
Sbjct: 243 HAWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLYELSDVALNF--ILVIGSITALF 300
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR+IAYS+++ +G M I++ S ++ +F+ F + +
Sbjct: 301 MG-ILGIIQNDIKRVIAYSTLSQLGYM---TIALGVSAYSVSVFHLMTHAFFKALLF--- 353
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 354 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITFLLGNLALIGTPFFSGFYSKDA 407
Query: 879 IFEKIFETQ 887
I E + +
Sbjct: 408 IIEAVHASN 416
>gi|299530753|ref|ZP_07044168.1| proton-translocating NADH-quinone [Comamonas testosteroni S44]
gi|298721269|gb|EFI62211.1| proton-translocating NADH-quinone [Comamonas testosteroni S44]
Length = 670
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 196/273 (71%), Gaps = 53/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF+Y KP AI ANLKAFL+NR
Sbjct: 134 MSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANLKAFLVNRVGDFGFILGIGLIAAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 194 TGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPLHAWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPL+ELS+ AL+ IL IG+ITA FMG+LGIIQNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVSRMSPLYELSDVALNFILVIGSITALFMGILGIIQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMT+ LGVSAY+VS+FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 314 VIAYSTLSQLGYMTIALGVSAYSVSVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
G+ KYMPIT IT L+G L+L+G PFFSGFYSKD
Sbjct: 374 GVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 406
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 219 WLLVTVTAICLFIGAMGKSAQFPLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 277
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S N I+ + I+ +++ ++ ++Q DIK++IAYS+++ +G++T+ + ++
Sbjct: 278 -PLY-ELSDVALNFILVIGSITALFMGILGIIQNDIKRVIAYSTLSQLGYMTIAL-GVSA 334
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
S+ ++ +++HA + +F+ G + M + I GG+ +P + +I F L
Sbjct: 335 YSV--SVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMP---ITWITFLLG 389
Query: 538 NCSLPGTSGFIG 549
N +L GT F G
Sbjct: 390 NLALIGTPFFSG 401
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 148/309 (47%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI + A +K F++ + GF
Sbjct: 124 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANLKAFLVNRVGDFGF 183
Query: 646 MLYGISILYGITGTLELQSIFNVI------KLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF + +L ++ ++ + + +G K P
Sbjct: 184 IL-GIGLIAAYTGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPL 242
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R+ + L + +N+ IL+I +I +L
Sbjct: 243 HAWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLYELSDVALNF--ILVIGSITALF 300
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR+IAYS+++ +G M I++ S ++ +F+ F + +
Sbjct: 301 MG-ILGIIQNDIKRVIAYSTLSQLGYM---TIALGVSAYSVSVFHLMTHAFFKALLF--- 353
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 354 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITFLLGNLALIGTPFFSGFYSKDA 407
Query: 879 IFEKIFETQ 887
I E + +
Sbjct: 408 IIEAVHASN 416
>gi|402565966|ref|YP_006615311.1| NADH dehydrogenase subunit L [Burkholderia cepacia GG4]
gi|402247163|gb|AFQ47617.1| NADH dehydrogenase subunit L [Burkholderia cepacia GG4]
Length = 684
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS + IGAITA FMG LGIIQNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFVTVIGAITALFMGFLGIIQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QDIRNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVALFHLMTHAFFKALLFLGAGSVIMGMHHDQDIRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FVTVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVALF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + I N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDIRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFVTVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVALFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDIRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|221068601|ref|ZP_03544706.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Comamonas testosteroni KF-1]
gi|220713624|gb|EED68992.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Comamonas testosteroni KF-1]
Length = 678
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/273 (64%), Positives = 196/273 (71%), Gaps = 53/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF+Y KP AI AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPLHAWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPL+ELS+ AL+ IL IG+ITA FMG+LGIIQNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVSRMSPLYELSDVALNFILVIGSITALFMGILGIIQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMT+ LGVSAY+VS+FHLMTHAFFKALLFL AGS+I+ M HNQDIR MG
Sbjct: 322 VIAYSTLSQLGYMTIALGVSAYSVSVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKD 220
G+ KYMPIT IT L+G L+L+G PFFSGFYSKD
Sbjct: 382 GVRKYMPITWITFLLGNLALIGTPFFSGFYSKD 414
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
WL +T FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 227 WLLVTVTAICLFIGAMGKSAQFPLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS 285
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
P++ + S N I+ + I+ +++ ++ ++Q DIK++IAYS+++ +G++T+ + ++
Sbjct: 286 -PLY-ELSDVALNFILVIGSITALFMGILGIIQNDIKRVIAYSTLSQLGYMTIAL-GVSA 342
Query: 479 ISIQGAIIQMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLA 537
S+ ++ +++HA + +F+ G + M + I GG+ +P + +I F L
Sbjct: 343 YSV--SVFHLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMP---ITWITFLLG 397
Query: 538 NCSLPGTSGFIG 549
N +L GT F G
Sbjct: 398 NLALIGTPFFSG 409
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 148/309 (47%), Gaps = 24/309 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFYYKKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNVI------KLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL IF + +L ++ ++ + + +G K P
Sbjct: 192 IL-GIGLIAAYTGTLNYSEIFAKLPEIQNTQLPGTGWLLVTVTAICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R+ + L + +N+ IL+I +I +L
Sbjct: 251 HAWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLYELSDVALNF--ILVIGSITALF 308
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR+IAYS+++ +G M I++ S ++ +F+ F + +
Sbjct: 309 MG-ILGIIQNDIKRVIAYSTLSQLGYM---TIALGVSAYSVSVFHLMTHAFFKALLF--- 361
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ G+ + P + ++ +L G P GFY+K
Sbjct: 362 -LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITFLLGNLALIGTPFFSGFYSKDA 415
Query: 879 IFEKIFETQ 887
I E + +
Sbjct: 416 IIEAVHASN 424
>gi|399040077|ref|ZP_10735531.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF122]
gi|398061962|gb|EJL53748.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Rhizobium sp. CF122]
Length = 491
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 241/335 (71%), Gaps = 1/335 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I + LG+DG+S F+ LTA + + +L S + I +K+ E+M + L++ L
Sbjct: 62 EVRPWVPALGITFALGVDGISALFVFLTALLGAVCVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F ALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFSALDLFLFYVFWEAMLIPMYLIIGVWGGDGRIYAAFKFFLYTLAGSVLFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY K+F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYINGGKTFDILALTAKDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVT+GIF L ++GAI+QM +H + + A+F+ +G +Y + TR I+++GG
Sbjct: 302 YSSISHMGFVTMGIFALNLRGLEGAILQMFNHGVTTGALFLFVGLIYERTHTRSIADYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
++ V P +S F +F L++ +LPGT+ F+GE +++
Sbjct: 362 LMKVAPVYSAFLALFILSSMALPGTNSFVGELLVL 396
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + +I + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGAILQMFNHGVTT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I + GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIADYGGLMKVAPV 368
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 129/294 (43%), Gaps = 25/294 (8%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLN--NINCSVLALSLLLIIV 688
AA K+F+ + S L G+ +LY I G F+++ L ++ V + +V
Sbjct: 160 AAFKFFLYTLAGSVLFLIGVIVLY-ING----GKTFDILALTAKDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++ I +
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGAILQMFNH 333
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
G+ ++F L I + +T + D + GL + P + + +F+ S
Sbjct: 334 GVTTGALFLFVGL------IYERTHTRSIAD----YGGLMKVAPVYSAFLALFILSSMAL 383
Query: 868 PPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAK-----GGRIIKDCPGVG 916
P T F + + F + I+ +L+GA G++ P VG
Sbjct: 384 PGTNSFVGELLVLAGGFAANLA-VGAAAILGALLGAAYLLGMYGKVALGPPSVG 436
>gi|307730329|ref|YP_003907553.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Burkholderia sp. CCGE1003]
gi|307584864|gb|ADN58262.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. CCGE1003]
Length = 691
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLFAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS++ALS + IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVTRMSPLFELSDSALSFVTVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V +FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVGVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 409
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + +
Sbjct: 287 SALS-FVTVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVGVF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 139/311 (44%), Gaps = 36/311 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L+ G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLFAFAGSMNYGDVFAKRTELAALSFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDSALSFVTVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + G+F+++T+
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVS--------AYPVGVFHLMTHA 348
Query: 817 F----AILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
F LGA VII + ++ ++ GL + P + +I +L G P G
Sbjct: 349 FFKALLFLGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSG 403
Query: 873 FYAKFFIFEKI 883
FY+K I + +
Sbjct: 404 FYSKDSIIDAV 414
>gi|115352327|ref|YP_774166.1| NADH dehydrogenase subunit L [Burkholderia ambifaria AMMD]
gi|115282315|gb|ABI87832.1| NADH dehydrogenase subunit L [Burkholderia ambifaria AMMD]
Length = 684
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|78067035|ref|YP_369804.1| NADH dehydrogenase subunit L [Burkholderia sp. 383]
gi|77967780|gb|ABB09160.1| NADH dehydrogenase subunit L [Burkholderia sp. 383]
Length = 684
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|134296422|ref|YP_001120157.1| NADH dehydrogenase subunit L [Burkholderia vietnamiensis G4]
gi|387902782|ref|YP_006333121.1| NADH-ubiquinone oxidoreductase subunit L [Burkholderia sp. KJ006]
gi|134139579|gb|ABO55322.1| NADH dehydrogenase subunit L [Burkholderia vietnamiensis G4]
gi|387577674|gb|AFJ86390.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia sp. KJ006]
Length = 684
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|170698120|ref|ZP_02889200.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia ambifaria IOP40-10]
gi|170136978|gb|EDT05226.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia ambifaria IOP40-10]
Length = 684
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|418399834|ref|ZP_12973380.1| proton-translocating NADH-quinone oxidoreductase chain M
[Sinorhizobium meliloti CCNWSX0020]
gi|359506162|gb|EHK78678.1| proton-translocating NADH-quinone oxidoreductase chain M
[Sinorhizobium meliloti CCNWSX0020]
Length = 491
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 246/335 (73%), Gaps = 1/335 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA ++LI +L S + I +K+ E+M + L++ L
Sbjct: 62 ESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFQGGETFDILALTEQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLLLSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
++ P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 362 LMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVL 396
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLL 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + SI + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I N GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIANYGGLMKAAPV 368
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G F+++ L + S L +V
Sbjct: 160 AAFKFFLYTLAGSILFLIGVIVLYFQGG-----ETFDILALTEQDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L+L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLLLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFAL 318
>gi|172061198|ref|YP_001808850.1| NADH dehydrogenase subunit L [Burkholderia ambifaria MC40-6]
gi|171993715|gb|ACB64634.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia ambifaria MC40-6]
Length = 684
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|206560692|ref|YP_002231457.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia J2315]
gi|421867924|ref|ZP_16299576.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia cenocepacia
H111]
gi|444359650|ref|ZP_21160947.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia BC7]
gi|444369297|ref|ZP_21169058.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia
K56-2Valvano]
gi|198036734|emb|CAR52634.1| NADH-ubiquinone oxidoreductase I chain L [Burkholderia cenocepacia
J2315]
gi|358071855|emb|CCE50454.1| NADH-ubiquinone oxidoreductase chain L [Burkholderia cenocepacia
H111]
gi|443599372|gb|ELT67661.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia
K56-2Valvano]
gi|443601607|gb|ELT69744.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia BC7]
Length = 684
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|107023177|ref|YP_621504.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia AU 1054]
gi|116690259|ref|YP_835882.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia HI2424]
gi|170733598|ref|YP_001765545.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia MC0-3]
gi|254247668|ref|ZP_04940989.1| NADH-plastoquinone oxidoreductase, chain 5 [Burkholderia
cenocepacia PC184]
gi|105893366|gb|ABF76531.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia AU 1054]
gi|116648348|gb|ABK08989.1| NADH dehydrogenase subunit L [Burkholderia cenocepacia HI2424]
gi|124872444|gb|EAY64160.1| NADH-plastoquinone oxidoreductase, chain 5 [Burkholderia
cenocepacia PC184]
gi|169816840|gb|ACA91423.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia cenocepacia MC0-3]
Length = 684
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAFL+NR
Sbjct: 136 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFLVNRVGDFGFLLGIGLLLAF 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 AGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+TALS I IGAITA FMG LGI+QNDIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVSRMSPLFELSDTALSFITVIGAITALFMGFLGIVQNDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+I+ M H+QD+RNMG
Sbjct: 316 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 376 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 409
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 229 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 287 TALS-FITVIGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + + N GG+ +P + ++ SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 403 GFYSKDSII-DAVKLSHLPG 421
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 134/307 (43%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFLVNRVG 181
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G++ +F + + +L ++ + + +G K
Sbjct: 182 DFGFLLGIGLLLAFAGSMNYGEVFAKRAELASLHFPGTDWGLLTVACICLFIGAMGKSAQ 241
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L + ++ +
Sbjct: 242 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDTALSFITVIGAIT 299
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 300 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF- 355
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 356 ---LGAGSVIMGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSK 407
Query: 877 FFIFEKI 883
I + +
Sbjct: 408 DSIIDAV 414
>gi|383313148|ref|YP_005365949.1| NADH:ubiquinone oxidoreductase subunit M [Candidatus Rickettsia
amblyommii str. GAT-30V]
gi|378931808|gb|AFC70317.1| NADH:ubiquinone oxidoreductase subunit M [Candidatus Rickettsia
amblyommii str. GAT-30V]
Length = 493
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/380 (48%), Positives = 261/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLICFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KIHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
AP GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APASGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+ L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMTAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ P S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPASGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ + +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMTAMLGSVGLPGTSGF 398
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 29/286 (10%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
+ +L IF + +NI + I + + K+ + PFH W+PD + G+ I
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDAHVQAPASGSVI 252
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLI-LAIFSLIIGNVSAITQYNFK 771
+ +LL KL + + LL C P V I +I L++ ++I ++ A+ Q + K
Sbjct: 253 LAGILL----KLGGYGFLRVLLPLC--PSVSQEFAIYVIYLSVIAIIYASLVALAQKDMK 306
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 307 KMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL-------- 356
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A M M G P T GF +F
Sbjct: 357 YERLHTKEIAKYGGVASKMPVLAAFFMTAMLGSVGLPGTSGFIGEF 402
>gi|384540612|ref|YP_005724695.1| NuoM2 NADH:quinone oxidoreductase subunit 4 (chain M)
[Sinorhizobium meliloti SM11]
gi|336035955|gb|AEH81886.1| NuoM2 NADH:quinone oxidoreductase subunit 4 (chain M)
[Sinorhizobium meliloti SM11]
Length = 491
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 245/335 (73%), Gaps = 1/335 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA ++LI +L S + I +K+ E+M + L++ L
Sbjct: 62 ESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFQGGETFDILALTGQDLPFGVQAWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
++ P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 362 LMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVL 396
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 10/174 (5%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFM 86
D P + A L F + K P+HTWLPD+ ++ PT A ++I A ++ G +
Sbjct: 199 DLPFGVQAWL--FFAFLVAFAVKVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYG 255
Query: 87 ITRMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG- 143
R S P+ E S +++L + A+ + GLL + Q+D+K+++AYS++S +G++T+G
Sbjct: 256 FLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGI 315
Query: 144 --LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
L + SI + H LFL G +I H + I N GGL K P+
Sbjct: 316 FALNLRGLEGSILQMFNHGITTGALFLFVG-LIYERTHTRSIANYGGLMKAAPV 368
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
AA K+F+ + S L G+ +LY + F+++ L ++ V A +V
Sbjct: 160 AAFKFFLYTLAGSILFLIGVIVLY-----FQGGETFDILALTGQDLPFGVQAWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFAL 318
>gi|423016165|ref|ZP_17006886.1| NADH-quinone oxidoreductase chain 12 [Achromobacter xylosoxidans
AXX-A]
gi|338780856|gb|EGP45255.1| NADH-quinone oxidoreductase chain 12 [Achromobacter xylosoxidans
AXX-A]
Length = 680
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLSKLTLPGSDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS I+ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFIIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FIIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAA 417
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 33/328 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F + + L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYGEVFAQADKLSKLTLPGSDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L +I +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFII------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEKIFETQKIWLLLLIIMCSLIG 902
+K I E +W +LIG
Sbjct: 409 SKEHIIEAA-GAAHVWGASFAYYATLIG 435
>gi|33602805|ref|NP_890365.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
RB50]
gi|410421280|ref|YP_006901729.1| NADH-ubiquinone oxidoreductase subunit L [Bordetella bronchiseptica
MO149]
gi|410473869|ref|YP_006897150.1| NADH-ubiquinone oxidoreductase subunit L [Bordetella parapertussis
Bpp5]
gi|412341861|ref|YP_006970616.1| NADH-ubiquinone oxidoreductase subunit L [Bordetella bronchiseptica
253]
gi|427815821|ref|ZP_18982885.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
1289]
gi|427818370|ref|ZP_18985433.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
D445]
gi|33577247|emb|CAE35804.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
RB50]
gi|408443979|emb|CCJ50676.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella parapertussis
Bpp5]
gi|408448575|emb|CCJ60258.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
MO149]
gi|408771695|emb|CCJ56499.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
253]
gi|410566821|emb|CCN24390.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
1289]
gi|410569370|emb|CCN17470.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
D445]
Length = 670
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS ++ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S +I + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FVIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAAGA 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 32/308 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L VI +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVI------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEK 882
+K I E
Sbjct: 409 SKEHIIEA 416
>gi|422323040|ref|ZP_16404080.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
gi|317401999|gb|EFV82599.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
Length = 678
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLSKLTLPGSDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS I+ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFIIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FIIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAA 417
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 33/328 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F + + L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYGEVFAQADKLSKLTLPGSDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L +I +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFII------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEKIFETQKIWLLLLIIMCSLIG 902
+K I E +W +LIG
Sbjct: 409 SKEHIIEAA-GAAHVWGASFAYYATLIG 435
>gi|427825767|ref|ZP_18992829.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
Bbr77]
gi|410591032|emb|CCN06128.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella bronchiseptica
Bbr77]
Length = 670
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS ++ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S +I + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FVIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAAGA 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 32/308 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L VI +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVI------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEK 882
+K I E
Sbjct: 409 SKEHIIEA 416
>gi|16263289|ref|NP_436082.1| NuoM2 NADH-ubiquinone/plastoquinone (complex I) oxidoreductase
[Sinorhizobium meliloti 1021]
gi|14523966|gb|AAK65494.1| NuoM2 NADH:quinone oxidoreductase subunit 4 (chain M)
[Sinorhizobium meliloti 1021]
Length = 491
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 245/335 (73%), Gaps = 1/335 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA ++LI +L S + I +K+ E+M + L++ L
Sbjct: 62 ESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
++ P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 362 LMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVL 396
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + SI + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I N GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIANYGGLMKAAPV 368
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G F+++ L + S L +V
Sbjct: 160 AAFKFFLYTLAGSILFLIGVIVLYFQGG-----ETFDILALTGQDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFAL 318
>gi|359797076|ref|ZP_09299664.1| NADH-quinone oxidoreductase chain 12 [Achromobacter arsenitoxydans
SY8]
gi|359364974|gb|EHK66683.1| NADH-quinone oxidoreductase chain 12 [Achromobacter arsenitoxydans
SY8]
Length = 679
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLAAMTLPGSDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS I+ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFIIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEN 412
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FIIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKENIIEAAGH 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 143/310 (46%), Gaps = 36/310 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN++ ++ G E + L +LI ++ IF++ A + I +
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKA--FLINRVGDF 186
Query: 644 GFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGIS 697
GF+L GI +L+ GT+ +F + L + +L ++ + + +G K
Sbjct: 187 GFVL-GIGLLFAYAGTMHYGEVFAQADKLAAMTLPGSDWMLLTVACICLFIGAMGKSAQV 245
Query: 698 PFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLIL 752
P H W+PD +G + I L+ + T + ++ R L L +I +I
Sbjct: 246 PLHAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFII------VIG 299
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
AI +L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F
Sbjct: 300 AIGALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKA 355
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ + LGA VII + ++ ++ GL + P + ++ +L G P G
Sbjct: 356 LLF----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSG 406
Query: 873 FYAKFFIFEK 882
FY+K I E
Sbjct: 407 FYSKENIIEA 416
>gi|33592018|ref|NP_879662.1| NADH-ubiquinone oxidoreductase subunit L [Bordetella pertussis
Tohama I]
gi|384203320|ref|YP_005589059.1| NADH-ubiquinone oxidoreductase subunit L [Bordetella pertussis CS]
gi|33571662|emb|CAE41155.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella pertussis
Tohama I]
gi|332381434|gb|AEE66281.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella pertussis CS]
Length = 670
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS ++ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S +I + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FVIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAAGA 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 32/308 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L VI +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVI------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEK 882
+K I E
Sbjct: 409 SKEHIIEA 416
>gi|408416215|ref|YP_006626922.1| NADH-ubiquinone oxidoreductase subunit L [Bordetella pertussis
18323]
gi|401778385|emb|CCJ63797.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella pertussis
18323]
Length = 670
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS ++ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S +I + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FVIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAAGA 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 32/308 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L VI +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVI------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEK 882
+K I E
Sbjct: 409 SKEHIIEA 416
>gi|163855998|ref|YP_001630296.1| NADH-ubiquinone oxidoreductase subunit L [Bordetella petrii DSM
12804]
gi|163259726|emb|CAP42027.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella petrii]
Length = 671
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS ++ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S +I + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FVIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAA 417
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 146/328 (44%), Gaps = 33/328 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L VI +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVI------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEKIFETQKIWLLLLIIMCSLIG 902
+K I E +W +LIG
Sbjct: 409 SKEHIIEAA-GAADVWGAGFAYYATLIG 435
>gi|334319110|ref|YP_004551669.1| proton-translocating NADH-quinone oxidoreductase chain M
[Sinorhizobium meliloti AK83]
gi|334099537|gb|AEG57546.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti AK83]
Length = 491
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 245/335 (73%), Gaps = 1/335 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA ++LI +L S + I +K+ E+M + L++ L
Sbjct: 62 ESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
++ P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 362 LMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVL 396
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + SI + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I N GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIANYGGLMKAAPV 368
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY + F+++ L + S L +V
Sbjct: 160 AAFKFFLYTLAGSILFLIGVIVLY-----FQGGETFDILALTGQDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFAL 318
>gi|407691078|ref|YP_006814662.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium meliloti Rm41]
gi|433616062|ref|YP_007192857.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti GR4]
gi|10945075|emb|CAC14150.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
meliloti]
gi|407322253|emb|CCM70855.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium meliloti Rm41]
gi|429554309|gb|AGA09258.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti GR4]
Length = 491
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 245/335 (73%), Gaps = 1/335 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA ++LI +L S + I +K+ E+M + L++ L
Sbjct: 62 ESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
++ P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 362 LMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVL 396
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + SI + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I N GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIANYGGLMKAAPV 368
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY G F+++ L + S L +V
Sbjct: 160 AAFKFFLYTLAGSILFLIGVIVLYFQGG-----ETFDILALTGQDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFAL 318
>gi|67459650|ref|YP_247274.1| NADH dehydrogenase subunit M [Rickettsia felis URRWXCal2]
gi|75535954|sp|Q4UK26.1|NUOM_RICFE RecName: Full=NADH-quinone oxidoreductase subunit M; AltName:
Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1
subunit M
gi|67005183|gb|AAY62109.1| NADH dehydrogenase I chain M [Rickettsia felis URRWXCal2]
Length = 493
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 182/379 (48%), Positives = 258/379 (68%), Gaps = 4/379 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFIERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLY-YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
S+IY+Y I N + +I Q L+ FIAFA+KIPI P HTWLPDAHV+A
Sbjct: 186 SLIYIYSKIHNFDLTYIPELTGNIPLFTQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQA 245
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSVILA I+LK G YG LR LP+F S F+ +I LS+I+IIY SL+A+ Q D+
Sbjct: 246 PTSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAIIYASLVALAQKDM 305
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+ I
Sbjct: 306 KKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKEI 365
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 366 AKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFIAALGIIL 425
Query: 575 SAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 426 GAVYMLKLYKEVM--LGEI 442
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PLF + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+L I + NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HNFDLTYIPELT--GNIPLFTQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ + ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|33597900|ref|NP_885543.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella parapertussis
12822]
gi|33574329|emb|CAE38665.1| NADH-ubiquinone oxidoreductase, chain L [Bordetella parapertussis]
Length = 670
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYADVFAQADKLAGEILPGTDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+TALS ++ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S +I + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDTALS-FVIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAAGA 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 32/308 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYADVFAQADKLAGEILPGTDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H W+PD +G + I L+ + T + ++ R L L VI +I AI
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVI------VIGAI 301
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F +
Sbjct: 302 GALFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALL 357
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 358 F----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFY 408
Query: 875 AKFFIFEK 882
+K I E
Sbjct: 409 SKEHIIEA 416
>gi|150375776|ref|YP_001312372.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sinorhizobium medicae WSM419]
gi|150030323|gb|ABR62439.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium medicae WSM419]
Length = 491
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/367 (46%), Positives = 254/367 (69%), Gaps = 1/367 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA + LI +L S + I +K+ E+M + L++ L
Sbjct: 62 ESRPWVAALGIAYALGVDGISALFLFLTALLGLISVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFQGGETFDILALTAQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSLP+ P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLLLSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ P ++ F +F+L++ +LPGT+ F+GE +++ N G + SAAY
Sbjct: 362 LMKAAPIYTAFLALFTLSSMALPGTNAFVGELLVLSGGFAANLAAGTAAVVGALLSAAYL 421
Query: 580 LCLSKNI 586
L + +
Sbjct: 422 LGMYGKV 428
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R S P+ E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLL 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + SI + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I N GGL K PI
Sbjct: 338 GALFLFVG-LIYERTHTRSIANYGGLMKAAPI 368
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKL--NNINCSVLALSLLLIIV 688
AA K+F+ + S L G+ +LY G F+++ L ++ V + +V
Sbjct: 160 AAFKFFLYTLAGSILFLIGVIVLYFQGG-----ETFDILALTAQDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLPMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L+L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLLLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFAL 318
>gi|385198443|gb|AFI44329.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
Length = 495
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 182/366 (49%), Positives = 258/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY++A LI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+ E+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILPMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 43.5 bits (101), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 28/297 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII-- 713
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 714 -ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
I L L T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKLGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHM + + S+ I GL + + +F +G +L +
Sbjct: 307 IIAYSSVAHMNFVTIGMFSLNIQGIGGSILPMLSHGL--VSSALFLCVG------VLYDR 358
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I F + P T F +F I F+ +
Sbjct: 359 --HKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|374092110|gb|AEY83719.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Symphyogyna
brasiliensis]
Length = 437
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 177/366 (48%), Positives = 253/366 (69%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+ L+F+ LT F+T I IL+ L +K EYM AF I L I
Sbjct: 31 WLPYPNINFYIGIDGIPLFFVVLTTFLTPICILVGLHSVKGYKKEYMIAFFICESLPIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
F LD ++FY+ FE+ LIP+FIIIG WG R AA +FFLYTLMGS ML+++++++
Sbjct: 91 FRPLDLLIFYVSFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSSFMLLAIVFIFS 150
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + ++ ++ QI L I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTT-DLQIXPTTEFSERRQILLXIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIP 209
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I+ KLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYSS
Sbjct: 210 AGILPKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSS 269
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G Y++ KTR+ +GG+++
Sbjct: 270 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGAPYDRHKTRIFKYYGGLVS 329
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P FS F+ F+LAN SLPGTS FIGEF I++ A + N + L + +I AAYS L
Sbjct: 330 TMPIFSTIFLFFTLANMSLPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSPWL 389
Query: 583 SKNIIF 588
++F
Sbjct: 390 YNRVVF 395
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A + G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVIPAGILPKLGTYGFLRFSIPMFPEATLYFTPFIYT 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ K + + GGL MPI
Sbjct: 303 SALFLCVGAPYDRHK-TRIFKYYGGLVSTMPI 333
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 131/298 (43%), Gaps = 33/298 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVSFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSSFMLLAIVFIFSQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+LQ I + + +L ++ S K+ + P H+W+P+ + A +++ +
Sbjct: 155 TDLQ-IXPTTEFSERRQILLXIAFF---ASFSVKVPMVPVHIWLPEAHVEAPTAGSVIPA 210
Query: 720 -TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
PKL + + R I + + + L++ ++I +++ I Q + K++IAYSS
Sbjct: 211 GILPKLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSS 269
Query: 779 IAHM-----GLMLFSIISIKTSHNNLIIFNSCDSGLFYII--------TYIFAILGA--- 822
+AHM G+ +I I+ S ++ S LF + T IF G
Sbjct: 270 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGAPYDRHKTRIFKYYGGLVS 329
Query: 823 ----FGVIIL---LKNNTCNKTD----ELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
F I L L N + T E I +G QRN A + + M A + P
Sbjct: 330 TMPIFSTIFLFFTLANMSLPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSP 387
>gi|157826245|ref|YP_001493965.1| NADH dehydrogenase subunit M [Rickettsia akari str. Hartford]
gi|157800203|gb|ABV75457.1| NADH dehydrogenase subunit M [Rickettsia akari str. Hartford]
Length = 493
Score = 339 bits (869), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 183/380 (48%), Positives = 261/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TL+ I+ SL IKK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLVCIIGSLFTIKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ +L+ I Q L+ FIAFAIKIP+ P+HTWLPDAHV+
Sbjct: 186 SLIYIYS-KIHSFDLTYIPELTDNIPLFAQQILWWAIFIAFAIKIPMIPVHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I++KLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILIKLGGYGFLRVLLPLLPSVSQEFAIYVIYLSIIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF T + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTDAGVNGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + + + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMHVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGTYKVNVAATCVAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K I+ LG++
Sbjct: 425 IGAVYMLKLYKEIM--LGEI 442
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P+HTWLPD+ ++ PT S ++ + G + + PL + +I ++++
Sbjct: 228 KIPMIPVHTWLPDAHVQAPTSGSVILAGILIKLGGYGFLRVLLPLLPSVSQEFAIYVIYL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GV+ +IF +++H
Sbjct: 288 SIIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTDAGVNG---AIFQMLSHGV 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ M + +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMHVLATFFMIAMLGSVGLPGTSGF 398
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L I + +NI + I + + K+ + P H W+PD + A
Sbjct: 195 HSFDLTYIPELT--DNIPLFAQQILWWAIFIAFAIKIPMIPVHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL+ + + I L+I ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILIKLGGYGFLRVLLPLLPSVSQEFAIYVIYLSIIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + N IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTDAGVNGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMHVLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|379023306|ref|YP_005299967.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia canadensis
str. CA410]
gi|376324244|gb|AFB21485.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia canadensis
str. CA410]
Length = 493
Score = 338 bits (868), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 182/380 (47%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y + W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVEHYTWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGENRIYAAFKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ +L+ I Q L+ T FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KIHSFDLTYIPELTGNIPLFAQKVLWWTIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR L + P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLTLLPTTSQAFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+G+F T+ I GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGMFSFTEAGISGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG++N +P + FF++ +++ LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVVNKMPVLATFFMMAIVSSIGLPGTSGFIGEFLSLLGIYKVNIAATFVAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 425 LGAGYMLKLYKEVM--LGEI 442
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 12/176 (6%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILF 106
K P HTWLPD+ ++ PT S ++ + G + + L ++ A +I +++
Sbjct: 227 VKIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLTLLPTTSQAFAIYVIY 286
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q D+K++IAYS+++ +GY+T+G+ G+S +IF +++H
Sbjct: 287 LSVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGMFSFTEAGISG---AIFQMLSHG 343
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ ++ ++S +G P SGF
Sbjct: 344 VISSCLFLIVGTLYERL-HTKEIAKYGGVVNKMPVLATFFMMAIVSSIGLPGTSGF 398
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 29/286 (10%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AAFKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
+ +L I + NI + I + + K+ + PFH W+PD + G+ I
Sbjct: 195 HSFDLTYIPELT--GNIPLFAQKVLWWTIFIAFAVKIPMIPFHTWLPDAHVQAPTSGSVI 252
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLI-LAIFSLIIGNVSAITQYNFK 771
+ +LL KL + + LL LLP I +I L++ ++I ++ A+ Q + K
Sbjct: 253 LAGILL----KLGGYGFLRVLL--TLLPTTSQAFAIYVIYLSVIAIIYASLVALAQKDMK 306
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
+MIAYSSIAHMG + + S + + IF G+ I + +F I+G
Sbjct: 307 KMIAYSSIAHMGYVTIGMFSFTEAGISGAIFQMLSHGV--ISSCLFLIVGTL-------- 356
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A M+ + S G P T GF +F
Sbjct: 357 YERLHTKEIAKYGGVVNKMPVLATFFMMAIVSSIGLPGTSGFIGEF 402
>gi|295311648|ref|YP_003587245.1| NADH dehydrogenase subunit 4 [Citrullus lanatus]
gi|259156776|gb|ACV96638.1| NADH dehydrogenase subunit 4 [Citrullus lanatus]
Length = 495
Score = 338 bits (868), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 183/366 (50%), Positives = 258/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ + I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCATPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F E + A I
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCATPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G L + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 44.7 bits (104), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 18/201 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII-- 713
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 714 -ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
I L L T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKLGTYGFLRFSIPMFPEATLCATPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIISIK 793
+IAYSS+AHM L+ + S+
Sbjct: 307 IIAYSSVAHMNLVTIGMFSLN 327
>gi|295311691|ref|YP_003587350.1| NADH dehydrogenase subunit 4 [Cucurbita pepo]
gi|259156819|gb|ACV96680.1| NADH dehydrogenase subunit 4 [Cucurbita pepo]
Length = 495
Score = 338 bits (868), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 257/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI + LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINFSLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ + I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCATPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+GIF L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGIFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F E + A I
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCATPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G L + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGIFSLNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 18/201 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII-- 713
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 714 -ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
I L L T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKLGTYGFLRFSIPMFPEATLCATPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIISIK 793
+IAYSS+AHM L+ I S+
Sbjct: 307 IIAYSSVAHMNLVTIGIFSLN 327
>gi|327398409|ref|YP_004339278.1| proton-translocating NADH-quinone oxidoreductase subunit M [Hippea
maritima DSM 10411]
gi|327181038|gb|AEA33219.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hippea
maritima DSM 10411]
Length = 521
Score = 338 bits (868), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 169/374 (45%), Positives = 263/374 (70%), Gaps = 6/374 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
++ WI Y++G+DG+SL+ + LT F+T I L + I KK+ + L++
Sbjct: 69 ERVPWIKSLGFQYYVGVDGISLFLVLLTTFLTPIAQLSTWKAIDKKVKLFNIVILLMQTG 128
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G F +LD LFY+F+E LIP++++IG WGG NR +A +KFFLYT GS+ ML++++
Sbjct: 129 MLGVFISLDVFLFYVFWELQLIPMYLMIGIWGGPNRVFATMKFFLYTFAGSVFMLVAIMA 188
Query: 340 LYYISNK-----SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
LY++ +K + +++ Q + Q+WLF+ FFIAFAIK+P+WP HTWLP AHVEA
Sbjct: 189 LYFLHHKYTGTYTMDMVQLMQQPLPHHLQLWLFLAFFIAFAIKVPMWPFHTWLPWAHVEA 248
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSVILA ++LK+G YG LRF+LP+FPD ++ F+ L+I LS+I I Y + +AMVQ DI
Sbjct: 249 PTAGSVILAGVLLKMGTYGFLRFNLPMFPDMTHAFAVLVIVLSIIGIFYGAFVAMVQPDI 308
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KKL+AYSS++H+G+ LG+F LT+ ++G+I+QM++H + + A+F+ +G +Y + TRLI
Sbjct: 309 KKLVAYSSVSHLGYSMLGMFALTQTGVEGSILQMVNHGISTGALFLVVGIVYERRHTRLI 368
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
S +GG+ ++P F+ FF+IF+L++ ++PGT+GF+GEFMI+L A G++ + +F
Sbjct: 369 SEYGGLAYLVPAFAAFFMIFTLSSIAVPGTNGFVGEFMILLGAFMSKPVYGIIVAFGGLF 428
Query: 575 SAAYSLCLSKNIIF 588
SA Y L + K + F
Sbjct: 429 SAVYMLTMYKRVFF 442
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 28 DKPLAITANLKAFLINRIGAMAKSAQFPLHTWLP-DSMEGPTPASALIHAATMVTAGIFM 86
+PL L FL I K +P HTWLP +E PT A ++I A ++ G +
Sbjct: 209 QQPLPHHLQLWLFLAFFIAFAIKVPMWPFHTWLPWAHVEAPT-AGSVILAGVLLKMGTYG 267
Query: 87 ITRMS-PLFELSNTALSIILFIGAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGL 144
R + P+F A ++++ + +I F G + ++Q DIK+++AYS++S LGY +G+
Sbjct: 268 FLRFNLPMFPDMTHAFAVLVIVLSIIGIFYGAFVAMVQPDIKKLVAYSSVSHLGYSMLGM 327
Query: 145 ------GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCI 198
GV SI ++ H LFL G I+ +H + I GGL +P
Sbjct: 328 FALTQTGVEG---SILQMVNHGISTGALFLVVG-IVYERRHTRLISEYGGLAYLVPAFAA 383
Query: 199 TSLIGLLSLVGAPFFSGF 216
+I LS + P +GF
Sbjct: 384 FFMIFTLSSIAVPGTNGF 401
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 128/296 (43%), Gaps = 23/296 (7%)
Query: 601 LLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGI---- 656
L ++ L+L+ + L + I N +F A +K+F+ S FML I LY +
Sbjct: 140 LFYVFWELQLIPMYLMIGIWGGPNRVF---ATMKFFLYTFAGSVFMLVAIMALYFLHHKY 196
Query: 657 TGTLELQSIFNVIKLNNINCSVLALSLLL-IIVGLSFKLGISPFHMWVPDVYQGASIIIT 715
TGT + V + L L L L + + K+ + PFH W+P + A +
Sbjct: 197 TGTYTMDM---VQLMQQPLPHHLQLWLFLAFFIAFAIKVPMWPFHTWLPWAHVEAPTAGS 253
Query: 716 LLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
++L+ K+ + + R + + + ++++L+I + G A+ Q + K+++
Sbjct: 254 VILAGVLLKMGTYGFL-RFNLPMFPDMTHAFAVLVIVLSIIGIFYGAFVAMVQPDIKKLV 312
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS++H+G + + ++ + I + G+ +F ++G I+ +
Sbjct: 313 AYSSVSHLGYSMLGMFALTQTGVEGSILQMVNHGI--STGALFLVVG-----IVYERRHT 365
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
E GL P A MIF S P T GF +F I F ++ ++
Sbjct: 366 RLISEYG---GLAYLVPAFAAFFMIFTLSSIAVPGTNGFVGEFMILLGAFMSKPVY 418
>gi|171463537|ref|YP_001797650.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171193075|gb|ACB44036.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 686
Score = 338 bits (868), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VGM SYLLIGF++++ A+ AN+KAFL+NR
Sbjct: 141 MSNNLLQLFFGWEAVGMVSYLLIGFYFERQSAVFANVKAFLVNRVGDFGFILGIGILLAS 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 TGSMQYDVIFSQNSVLAAQTLPGTSWNLMTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS IL IG+ITA FMG LGI+QNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFILVIGSITALFMGFLGIVQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V+IFHLMTHAFFKALLFL+AGS+I+ + H QD+R MG
Sbjct: 321 VVAYSTLSQLGYMTVALGVSAYPVAIFHLMTHAFFKALLFLAAGSVILGIHHEQDMRKMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMPITC+ L+G L+LVG PFFSGFYSKD
Sbjct: 381 GLWKYMPITCLMMLLGNLALVGTPFFSGFYSKDS 414
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 144/307 (46%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NNLL ++ G E + + +LI +++ +F A +K F++ +
Sbjct: 131 LFTFAMLMLVMSNNLLQLFFGWEAVGMVSYLLIGFYFERQSAVF---ANVKAFLVNRVGD 187
Query: 644 -GFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI IL TG+++ IF+ L + +++ ++ + + +G K
Sbjct: 188 FGFIL-GIGILLASTGSMQYDVIFSQNSVLAAQTLPGTSWNLMTVACICLFIGAMGKSAQ 246
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 247 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDAALSFILVIGSIT 304
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + IF+ F + ++
Sbjct: 305 ALFMGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAIFHLMTHAFFKALLFL 361
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
A G +IL + ++ GL + P L+M++ +L G P GFY+K
Sbjct: 362 -----AAGSVIL----GIHHEQDMRKMGGLWKYMPITCLMMLLGNLALVGTPFFSGFYSK 412
Query: 877 FFIFEKI 883
I E +
Sbjct: 413 DSIIEAV 419
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 104/194 (53%), Gaps = 18/194 (9%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 291
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I+ + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 292 AALSF---ILVIGSITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 345
Query: 485 IIQMISHALISSAMFISIGF----LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCS 540
I +++HA + +F++ G ++++ R GG+ +P + ++ +LA
Sbjct: 346 IFHLMTHAFFKALLFLAAGSVILGIHHEQDMR---KMGGLWKYMPITCLMMLLGNLALVG 402
Query: 541 LPGTSGFIGEFMII 554
P SGF + II
Sbjct: 403 TPFFSGFYSKDSII 416
>gi|420253872|ref|ZP_14756906.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. BT03]
gi|398050748|gb|EJL43098.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. BT03]
Length = 688
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/274 (62%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAF++NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGFILGIGLILAY 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 GGSMNYGDVFAKSHELASLSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS++ALS I IGAIT FMG LG++QNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVTRMSPLFELSDSALSFITVIGAITTLFMGFLGVVQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 377 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 410
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 230 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 287
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 288 SALS-FITVIGAITTLFMGFLGVVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 343
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 344 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 403
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 404 GFYSKDSII-DAVKLSHLPG 422
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 135/304 (44%), Gaps = 22/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K FI+ + GF
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGF 186
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ G++ +F + + +L ++ + + +G K P
Sbjct: 187 IL-GIGLILAYGGSMNYGDVFAKSHELASLSFPGTDWGLLTVACICLFIGAMGKSAQFPL 245
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L + + ++ + +
Sbjct: 246 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDSALSFITVIGAITTLF 303
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
+ Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 304 MGFLGVVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF---- 356
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K I
Sbjct: 357 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSKDSI 411
Query: 880 FEKI 883
+ +
Sbjct: 412 IDAV 415
>gi|157827772|ref|YP_001496836.1| NADH dehydrogenase subunit M [Rickettsia bellii OSU 85-389]
gi|157803076|gb|ABV79799.1| NADH dehydrogenase I chain M [Rickettsia bellii OSU 85-389]
Length = 494
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/381 (48%), Positives = 264/381 (69%), Gaps = 8/381 (2%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +GIDG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYSWLDKIGLEFHVGIDGISIFFVSLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFE L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSINLLLFYLFFEVILVPMYIIIGVWGGENRIYAAVKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS---ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
S+IY+Y SF++ + + + ++QI L+ FIAFAIKIP+ P HTWLPDAHV
Sbjct: 186 SIIYIYS-KIHSFDLSNIGEFTNNFPLHVQQI-LWWAIFIAFAIKIPMIPFHTWLPDAHV 243
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
+APT GSVILA I+LKLG YG LR LP+ P+AS F+ +I LS+I+IIY SL+A+ Q
Sbjct: 244 QAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALAQK 303
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KK+IAYSSIAHMG+VT+GIF T + GA+ QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 304 DMKKMIAYSSIAHMGYVTIGIFSFTDSGVSGALFQMLSHGIISSCLFLIVGTLYERLHTK 363
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N L + +
Sbjct: 364 EIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFLAALGI 423
Query: 573 IFSAAYSLCLSKNIIFVLGQM 593
I A Y L L K ++ LG++
Sbjct: 424 ILGAIYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL ++ +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS ++F +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTDSGVSG---ALFQMLSHGI 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 33/300 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E++ + + ++I +N I+ AA+K+F+ S F L I +Y
Sbjct: 138 NLLLFYLFFEVILVPMYIIIGVWGGENRIY---AAVKFFLYTFFGSVFFLLSIIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L +I NN V + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLSNIGEFT--NNFPLHVQQILWWAIFIAFAIKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL+ N + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S S + +F G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTDSGVSGALFQMLSHGI--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
T E+ + G+ + P A MI M G P T GF +F I++ I
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVI 414
>gi|390572958|ref|ZP_10253150.1| NADH:ubiquinone oxidoreductase subunit L [Burkholderia terrae
BS001]
gi|389935076|gb|EIM97012.1| NADH:ubiquinone oxidoreductase subunit L [Burkholderia terrae
BS001]
Length = 688
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/274 (62%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAF++NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGFILGIGLILAY 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 GGSMNYGDVFAKSHELASLSFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS++ALS I IGAIT FMG LG++QNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVTRMSPLFELSDSALSFITVIGAITTLFMGFLGVVQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHLMTHAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYPVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 377 GLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 410
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 230 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSD 287
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 288 SALS-FITVIGAITTLFMGFLGVVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 343
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + + N GG+ +P + ++ SLA P S
Sbjct: 344 HLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLVGSLALIGTPFFS 403
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK + G
Sbjct: 404 GFYSKDSII-DAVKLSHLPG 422
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 135/304 (44%), Gaps = 22/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + A +K FI+ + GF
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFYFKRESAIYANMKAFIVNRVGDFGF 186
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ G++ +F + + +L ++ + + +G K P
Sbjct: 187 IL-GIGLILAYGGSMNYGDVFAKSHELASLSFPGTDWGLLTVACICLFIGAMGKSAQFPL 245
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L + + ++ + +
Sbjct: 246 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSDSALSFITVIGAITTLF 303
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
+ Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 304 MGFLGVVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLMTHAFFKALLF---- 356
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K I
Sbjct: 357 LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFYSKDSI 411
Query: 880 FEKI 883
+ +
Sbjct: 412 IDAV 415
>gi|374092060|gb|AEY83694.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepidogyna
hodgsoniae]
Length = 437
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 176/367 (47%), Positives = 257/367 (70%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I
Sbjct: 31 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+F E+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILPTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
A I+ KLG YG RFS+P+FP+A+ +F+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 SAGILSKLGTYGFSRFSIPMFPEATLHFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH +SSA+ + +G LY++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALPLCVGALYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P S F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYS
Sbjct: 329 STMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSPW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A + G + +R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVISAGILSKLGTYGFSRFSIPMFPEATLHFTPFIYA 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ L L G++ K + ++ GGL MPI+ L L+ + P S F
Sbjct: 303 SALPLCVGALYDRHK-TRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSF 354
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 97/197 (49%), Gaps = 12/197 (6%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ LE + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ ++ + L + S K+ + P H+W+P+ + A S+I
Sbjct: 155 TDLQ----ILPTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVISA 210
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
+LS KL + R I +++ + L++ ++I +++ I Q + K++IA
Sbjct: 211 GILS---KLGTYGF-SRFSIPMFPEATLHFTPFIYALSVIAIIYTSLTTIRQIDLKKIIA 266
Query: 776 YSSIAHMGLMLFSIISI 792
YSS+AHM + + S+
Sbjct: 267 YSSVAHMNFVTIGMFSL 283
>gi|319789719|ref|YP_004151352.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thermovibrio ammonificans HB-1]
gi|317114221|gb|ADU96711.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thermovibrio ammonificans HB-1]
Length = 482
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/374 (44%), Positives = 252/374 (67%), Gaps = 12/374 (3%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ ++ Y +G+DGLSL + +T +T + + + I+++ + + L+L ++G
Sbjct: 62 WLPNLSVKYKVGVDGLSLIMVVMTTLLTFVAVASAWSYIERRRKLFYALLLMLETAMVGV 121
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LD +LFYIF+EA LIP+ +IIG WGG R Y+A+KFF+YT GS+ +LI M+ L +
Sbjct: 122 FVSLDLLLFYIFWEAMLIPMALIIGIWGGERRIYSALKFFIYTFAGSIFLLIGMVVLVIV 181
Query: 344 -----SNKSFNILSWHQLSITKIE---QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
+F+I QL+ K+ Q WLF FF+AFA+K+P++P HTWLPDAHVEAP
Sbjct: 182 YGGLTGQYTFDI---QQLTAVKLPVELQKWLFWAFFLAFAVKVPVFPFHTWLPDAHVEAP 238
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILA ++LK+G YG LRFSLP+FPDA F+ +I L +++IIY +L+A+VQ D+K
Sbjct: 239 TPGSVILAGVLLKMGTYGFLRFSLPLFPDAYREFAPVIFALGVVAIIYTALVALVQDDVK 298
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
K++AYSS++HMGFV +G+F L I+GA+ QM++H L+S+A+F +G +Y ++ TR I
Sbjct: 299 KVVAYSSVSHMGFVMIGLFSLNVQGIEGAVFQMLNHGLVSAALFFLVGAIYERLHTRSIR 358
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
GG+ P + ++F++AN LPGTS FIGEF+ IL K +GVL + +IF
Sbjct: 359 KMGGLAEFAPKLATLAMLFTMANVGLPGTSSFIGEFLTILGGFKAATWVGVLMALGVIFG 418
Query: 576 AAYSLCLSKNIIFV 589
AAY L + +N+ F+
Sbjct: 419 AAYMLYMYRNVFFL 432
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K FP HTWLPD+ +E PTP S ++ A ++ G + R S PLF + + ++F
Sbjct: 220 KVPVFPFHTWLPDAHVEAPTPGSVIL-AGVLLKMGTYGFLRFSLPLFPDAYREFAPVIFA 278
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+G + + L+ ++Q+D+K+++AYS++S +G++ +G L V ++F ++ H
Sbjct: 279 LGVVAIIYTALVALVQDDVKKVVAYSSVSHMGFVMIGLFSLNVQGIEGAVFQMLNHGLVS 338
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LF G+I + H + IR MGGL ++ P +++ ++ VG P S F
Sbjct: 339 AALFFLVGAIYERL-HTRSIRKMGGLAEFAPKLATLAMLFTMANVGLPGTSSF 390
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 142/319 (44%), Gaps = 40/319 (12%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+LL Y+ E M + + ++I + I+S A+K+FI S F+L G+ +L +
Sbjct: 126 DLLLFYIFWEAMLIPMALIIGIWGGERRIYS---ALKFFIYTFAGSIFLLIGMVVLVIVY 182
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVY-----QGA 710
G L Q F++ +L + V L L+F K+ + PFH W+PD + G+
Sbjct: 183 GGLTGQYTFDIQQLTAVKLPVELQKWLFWAFFLAFAVKVPVFPFHTWLPDAHVEAPTPGS 242
Query: 711 SIIITLLLSTTP------KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSA 764
I+ +LL L LF YR + ++ L + ++I + A
Sbjct: 243 VILAGVLLKMGTYGFLRFSLPLFPDAYR-----------EFAPVIFALGVVAIIYTALVA 291
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFG 824
+ Q + K+++AYSS++HMG ++ + S+ +F + GL + +F ++GA
Sbjct: 292 LVQDDVKKVVAYSSVSHMGFVMIGLFSLNVQGIEGAVFQMLNHGL--VSAALFFLVGA-- 347
Query: 825 VIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
+ L + K GL + P A + M+F + G P T F +F F
Sbjct: 348 IYERLHTRSIRKMG------GLAEFAPKLATLAMLFTMANVGLPGTSSFIGEFLTILGGF 401
Query: 885 ETQKIWLLLLIIMCSLIGA 903
+ W+ +L+ + + GA
Sbjct: 402 KAAT-WVGVLMALGVIFGA 419
>gi|357967326|ref|YP_004935339.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
gi|344228011|gb|AEM46196.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
gi|385198388|gb|AFI44281.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
gi|385198410|gb|AFI44300.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
Length = 495
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 258/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY++A LI ++I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFIMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+ E+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILPMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 43.5 bits (101), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 28/297 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII-- 713
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 714 -ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
I L L T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKLGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSS+AHM + + S+ I GL + + +F +G +L +
Sbjct: 307 IIAYSSVAHMNFVTIGMFSLNIQGIGGSILPMLSHGL--VSSALFLCVG------VLYDR 358
Query: 833 TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I F + P T F +F I F+ +
Sbjct: 359 --HKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|154149339|ref|YP_001405801.1| NADH dehydrogenase subunit M [Campylobacter hominis ATCC BAA-381]
gi|153805348|gb|ABS52355.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenasei, chain m)
(ndh-1, chain m) [Campylobacter hominis ATCC BAA-381]
Length = 507
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 246/364 (67%), Gaps = 6/364 (1%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDG 289
I YF+GIDG+SL+ I L+ F+TLI LISL IK+++ + + L L +IG F ALDG
Sbjct: 69 GINYFIGIDGISLFLIILSTFMTLIA-LISLTIKERIKHLVISILALEMTMIGVFAALDG 127
Query: 290 MLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK--- 346
+LFYIF+E +LIP+ IIG WG R YAA+KFF+YT GS+ ML +I++ Y+ K
Sbjct: 128 ILFYIFWELSLIPMLYIIGAWGSGKRIYAAVKFFIYTFFGSVFMLFGLIFMAYLCYKTNG 187
Query: 347 --SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAA 404
SFNIL W +L I QIWLF+ F IAFAIK P++P HTWLP AH +APT GSV+LAA
Sbjct: 188 SFSFNILDWQRLEIPFNYQIWLFLAFSIAFAIKTPLFPFHTWLPYAHGQAPTIGSVLLAA 247
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
++LK+G YG +RFSLPIFPDAS YF++++ +++I IIY S IA Q D+K++IAYSSIA
Sbjct: 248 VLLKMGTYGFVRFSLPIFPDASLYFADMMCVIAIIMIIYTSFIAFAQKDLKQVIAYSSIA 307
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVI 524
HMG + LGIF T I GA+ M+SH ++S +F+ +GF+Y + T+L+S FGG+ V+
Sbjct: 308 HMGVIMLGIFSFTIEGISGAVFLMLSHGIVSGGLFMLVGFIYERKHTKLMSEFGGLAKVM 367
Query: 525 PHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSK 584
P ++ F + L + LP T GF+GEF+ +L K+ L +I A YS+ L K
Sbjct: 368 PFYAFTFCVVLLGSIGLPLTIGFVGEFLSLLGMFKYEPIYAFLGGFGIIMGAIYSMNLYK 427
Query: 585 NIIF 588
F
Sbjct: 428 KTFF 431
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 13/220 (5%)
Query: 26 WYDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDSM-EGPTPASALIHAATMVTAGI 84
W + + FL I K+ FP HTWLP + + PT S L+ AA ++ G
Sbjct: 196 WQRLEIPFNYQIWLFLAFSIAFAIKTPLFPFHTWLPYAHGQAPTIGSVLL-AAVLLKMGT 254
Query: 85 FMITRMS-PLFELSNTALS-IILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTV 142
+ R S P+F ++ + ++ I I + + Q D+K++IAYS+++ +G +
Sbjct: 255 YGFVRFSLPIFPDASLYFADMMCVIAIIMIIYTSFIAFAQKDLKQVIAYSSIAHMG--VI 312
Query: 143 GLGVSAYTV-----SIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITC 197
LG+ ++T+ ++F +++H LF+ G I KH + + GGL K MP
Sbjct: 313 MLGIFSFTIEGISGAVFLMLSHGIVSGGLFMLVG-FIYERKHTKLMSEFGGLAKVMPFYA 371
Query: 198 ITSLIGLLSLVGAPFFSGFYSKDKKKIWI-DYFNIYYFLG 236
T + LL +G P GF + + + Y IY FLG
Sbjct: 372 FTFCVVLLGSIGLPLTIGFVGEFLSLLGMFKYEPIYAFLG 411
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 32/275 (11%)
Query: 631 AAIKYFILGILSSGFMLYGISIL----YGITGTLELQSIFNVIKLNNINCSVLALSLLLI 686
AA+K+FI S FML+G+ + Y G+ FN++ + L +
Sbjct: 156 AAVKFFIYTFFGSVFMLFGLIFMAYLCYKTNGSFS----FNILDWQRLEIPFNYQIWLFL 211
Query: 687 IVGLSF--KLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVI 743
++F K + PFH W+P + A I ++LL+ K+ + + R + +
Sbjct: 212 AFSIAFAIKTPLFPFHTWLPYAHGQAPTIGSVLLAAVLLKMGTYGFV-RFSLPIFPDASL 270
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF- 802
+ ++ ++AI +I + A Q + K++IAYSSIAHMG+++ I S + +F
Sbjct: 271 YFADMMCVIAIIMIIYTSFIAFAQKDLKQVIAYSSIAHMGVIMLGIFSFTIEGISGAVFL 330
Query: 803 ----NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
GLF ++ +I+ T + F GL + P+ A
Sbjct: 331 MLSHGIVSGGLFMLVGFIY---------------ERKHTKLMSEFGGLAKVMPFYAFTFC 375
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
+ + G P TIGF +F +F+ + I+ L
Sbjct: 376 VVLLGSIGLPLTIGFVGEFLSLLGMFKYEPIYAFL 410
>gi|374092112|gb|AEY83720.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Symphyogyna
brongniartii]
Length = 437
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 178/367 (48%), Positives = 253/367 (68%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+ L+F+ T F+T I IL+ L +K EYM AF I L I
Sbjct: 31 WLPYPNINFYIGIDGIPLFFVVPTTFLTPICILVGLHSVKGYKKEYMIAFFICESLPIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLY- 341
F LD ++FY+ FE+ LIP+FIIIG WG R AA +FFLYTLMGS ML++++ ++
Sbjct: 91 FRPLDLLIFYVSFESVLIPMFIIIGVWGSRRRKIKAAYQFFLYTLMGSSFMLLAILSIFS 150
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI L+I FF++F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILPTTEFS--ERRQILLWIAFFVSFSVKVPMVPVHIWLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILPKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+F+ +G Y++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGAPYDRHKTRILKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+ AN SLPGTS F+GEF I++ A + N + L + +I AAYS
Sbjct: 329 STMPIFSTIFLFFAPANMSLPGTSSFVGEFPILVGAFQRNSLVATLAALGMILGAAYSPW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 16/291 (5%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVSFESVLIPMFIIIGVWGSRRRKIKAAYQFFLYTLMGSSFMLLAILSIFSQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+LQ ++ + L + V S K+ + P H+W+P+ + A +++L+
Sbjct: 155 TDLQ----ILPTTEFSERRQILLWIAFFVSFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 210
Query: 720 -TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSS 778
PKL + + R I + + + L++ ++I +++ I Q + K++IAYSS
Sbjct: 211 GILPKLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSS 269
Query: 779 IAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTD 838
+AHM + + S+ I GL + + +F +GA +KT
Sbjct: 270 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA--------PYDRHKTR 319
Query: 839 ELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
L + GL P + I + F + P T F +F I F+ +
Sbjct: 320 ILKYYGGLVSTMPIFSTIFLFFAPANMSLPGTSSFVGEFPILVGAFQRNSL 370
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A + G + R S P+F + + ++
Sbjct: 184 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILPKLGTYGFLRFSIPMFPEATLYFTPFIYT 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ K + ++ GGL MPI
Sbjct: 303 SALFLCVGAPYDRHK-TRILKYYGGLVSTMPI 333
>gi|300311108|ref|YP_003775200.1| NADH-ubiquinone oxidoreductase subunit N [Herbaspirillum
seropedicae SmR1]
gi|300073893|gb|ADJ63292.1| NADH-ubiquinone (chain N) oxidoreductase protein [Herbaspirillum
seropedicae SmR1]
Length = 502
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/316 (52%), Positives = 228/316 (72%), Gaps = 2/316 (0%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LGQM+MISGN+ LSIYLGLELMSL+L L+A ++++ S+EA +KYFILG L+SGF+LY
Sbjct: 119 LLGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLY 178
Query: 649 GISILYGITG-TLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY 707
G+S+LYG TG LEL +F I ++ + L ++ ++ GL+FKLG PFHMWVPDVY
Sbjct: 179 GMSMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVY 238
Query: 708 QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQ 767
QG+ +TLLL PKL+ F I +RLL++ +LPL ++WQ++L++LA+ S+I+GNV+AI Q
Sbjct: 239 QGSPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQ 298
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
N KRM+AYS+I+HMG ML ++S N N+ S LFY +TY+ LG+FGVII
Sbjct: 299 TNIKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVII 358
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
LL + + D LD F GL+QR+PW A +MMI MFSLAG PP +GFYAK + + T
Sbjct: 359 LLSRSGF-EADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATG 417
Query: 888 KIWLLLLIIMCSLIGA 903
+IWL +L ++ SLIGA
Sbjct: 418 QIWLPVLAVIFSLIGA 433
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 130/265 (49%), Gaps = 33/265 (12%)
Query: 318 AAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSIT-KIEQIWLF--ITFFIA- 373
A +K+F+ + S +L M LY + + + + ++ +++ L I F +A
Sbjct: 161 AGMKYFILGALASGFLLYGMSMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAG 220
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG-----LLRFSLPIFPDASYY 428
A K+ P H W+PD + +PT +++L A KL + L+ LP+ D
Sbjct: 221 LAFKLGAVPFHMWVPDVYQGSPTPVTLLLGAAP-KLATFAITFRLLVEGMLPLAVD---- 275
Query: 429 FSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQM 488
+ +++ L+++SII ++ A+ Q +IK+++AYS+I+HMGF+ LG M++ + + G +
Sbjct: 276 WQQMLMVLAVLSIILGNVTAIAQTNIKRMLAYSTISHMGFMLLG--MMSGV-VDGNLFSA 332
Query: 489 ISHALISSAMFISIGFLYNQM--------------KTRLISNFGGIINVIPHFSVFFIIF 534
++ SS++F ++ ++ + + + +F G+ P F+ +I
Sbjct: 333 VNA--YSSSLFYAVTYVITTLGSFGVIILLSRSGFEADTLDDFKGLNQRSPWFAAVMMIM 390
Query: 535 SLANCSLPGTSGFIGEFMIILSAVK 559
+ +P GF + ++ +A+
Sbjct: 391 MFSLAGIPPLVGFYAKLSVLQAAMA 415
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAAT-MVTAGIFMITRMSPLFELSNTALSIILFI 107
K P H W+PD +G PTP + L+ AA + T I + + L+ +++ +
Sbjct: 224 KLGAVPFHMWVPDVYQGSPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVL 283
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-----------GVSAYTVSIFHL 156
++ + I Q +IKR++AYST+S +G+M +G+ V+AY+ S+F+
Sbjct: 284 AVLSIILGNVTAIAQTNIKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYA 343
Query: 157 MTHAF-----FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
+T+ F ++ LS + + GL + P +I + SL G P
Sbjct: 344 VTYVITTLGSFGVIILLSRSGF-----EADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIP 398
Query: 212 FFSGFYSK 219
GFY+K
Sbjct: 399 PLVGFYAK 406
>gi|157804162|ref|YP_001492711.1| NADH dehydrogenase subunit M [Rickettsia canadensis str. McKiel]
gi|157785425|gb|ABV73926.1| NADH dehydrogenase subunit M [Rickettsia canadensis str. McKiel]
Length = 493
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 182/380 (47%), Positives = 261/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y + W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVEHYTWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGENRIYAAFKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ +L+ I Q L+ T FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KIHSFDLTYIPELTGNIPLFAQKVLWWTIFIAFAVKIPMIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR L + P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLTLLPTTSQAFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+G+F T+ I GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGMFSFTEAGISGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG++N +P + FF++ ++ LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVVNKMPVLATFFMMAIFSSIGLPGTSGFIGEFLSLLGIYKVNIAATFVAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 425 LGAGYMLKLYKEVM--LGEI 442
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILF 106
K P HTWLPD+ ++ PT S ++ + G + + L ++ A +I +++
Sbjct: 227 VKIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLTLLPTTSQAFAIYVIY 286
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+ I + L+ + Q D+K++IAYS+++ +GY+T+G+ G+S +IF +++H
Sbjct: 287 LSVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGMFSFTEAGISG---AIFQMLSHG 343
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ ++ + S +G P SGF
Sbjct: 344 VISSCLFLIVGTLYERL-HTKEIAKYGGVVNKMPVLATFFMMAIFSSIGLPGTSGF 398
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 29/286 (10%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AAFKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASI 712
+ +L I + NI + I + + K+ + PFH W+PD + G+ I
Sbjct: 195 HSFDLTYIPELT--GNIPLFAQKVLWWTIFIAFAVKIPMIPFHTWLPDAHVQAPTSGSVI 252
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLI-LAIFSLIIGNVSAITQYNFK 771
+ +LL KL + + LL LLP I +I L++ ++I ++ A+ Q + K
Sbjct: 253 LAGILL----KLGGYGFLRVLL--TLLPTTSQAFAIYVIYLSVIAIIYASLVALAQKDMK 306
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKN 831
+MIAYSSIAHMG + + S + + IF G+ I + +F I+G
Sbjct: 307 KMIAYSSIAHMGYVTIGMFSFTEAGISGAIFQMLSHGV--ISSCLFLIVGTL-------- 356
Query: 832 NTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A M+ +FS G P T GF +F
Sbjct: 357 YERLHTKEIAKYGGVVNKMPVLATFFMMAIFSSIGLPGTSGFIGEF 402
>gi|325267331|ref|ZP_08133993.1| NADH-quinone oxidoreductase subunit L [Kingella denitrificans ATCC
33394]
gi|324981268|gb|EGC16918.1| NADH-quinone oxidoreductase subunit L [Kingella denitrificans ATCC
33394]
Length = 672
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/273 (62%), Positives = 195/273 (71%), Gaps = 52/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ + AI ANLKAFL+NR+G
Sbjct: 136 MSNNFIQLFFGWEAVGLVSYLLIGFYFKRDSAIFANLKAFLVNRVGDFGFVLGIGLVLAY 195
Query: 47 --------------------------------------AMAKSAQFPLHTWLPDSMEGPT 68
AM KSAQFPLH WLPDSMEGPT
Sbjct: 196 FGGSLRYADVFAYLPNVQNVSFLGTDLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPT 255
Query: 69 PASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRI 128
P SALIHAATMVTAG+FM++RMSP++ELS TALS+I+ IGAITA FMG LG IQNDIKR+
Sbjct: 256 PISALIHAATMVTAGLFMVSRMSPMYELSTTALSVIMVIGAITALFMGFLGTIQNDIKRV 315
Query: 129 IAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
IAYSTLSQLGYMTV LGVSAY+V++FH+MTHAFFKALLFL+AGS+II M H+QD+RNMGG
Sbjct: 316 IAYSTLSQLGYMTVALGVSAYSVAMFHVMTHAFFKALLFLAAGSVIIGMHHDQDMRNMGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
L KYMPIT +T LIG LSL+G PFFSGFYSKD
Sbjct: 376 LRKYMPITWLTMLIGNLSLIGTPFFSGFYSKDS 408
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 150/312 (48%), Gaps = 39/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F +++I NN + ++ G E + L +LI + + IF++ +K F++ +
Sbjct: 126 LFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGFYFKRDSAIFAN---LKAFLVNRVGD 182
Query: 644 -GFMLYGIS-ILYGITGTLELQSIF----NVIKLNNINCSVLALSLLLIIVGLSFKLGIS 697
GF+L GI +L G+L +F NV ++ + ++ ++ LL+ VG K
Sbjct: 183 FGFVL-GIGLVLAYFGGSLRYADVFAYLPNVQNVSFLGTDLITVTCLLLFVGAMGKSAQF 241
Query: 698 PFHMWVPDVYQGASIIITLLLSTT-PKLSLFVI-----IYRLLIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T LF++ +Y L L I++I
Sbjct: 242 PLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPMYELSTTAL-------SVIMVI 294
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR+IAYS+++ +G M +++ S ++ +F+ F
Sbjct: 295 GAITALFMGFLGTI-QNDIKRVIAYSTLSQLGYM---TVALGVSAYSVAMFHVMTHAFFK 350
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + L A VII + ++ ++ GL + P L M+I SL G P
Sbjct: 351 ALLF----LAAGSVIIGMHHD-----QDMRNMGGLRKYMPITWLTMLIGNLSLIGTPFFS 401
Query: 872 GFYAKFFIFEKI 883
GFY+K I E +
Sbjct: 402 GFYSKDSIIEAV 413
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 381 WPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+P+H WLPD+ +E PT ++I AA M+ G + + R S P++ ++ S +I+ + I
Sbjct: 241 FPLHVWLPDS-MEGPTPISALIHAATMVTAGLFMVSRMS-PMYELSTTALS-VIMVIGAI 297
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+ +++ + +Q DIK++IAYS+++ +G++T+ + ++ S+ A+ +++HA + +F
Sbjct: 298 TALFMGFLGTIQNDIKRVIAYSTLSQLGYMTVAL-GVSAYSV--AMFHVMTHAFFKALLF 354
Query: 500 ISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT---SGFIGEFMIIL 555
++ G + + + N GG+ +P + ++ + N SL GT SGF + II
Sbjct: 355 LAAGSVIIGMHHDQDMRNMGGLRKYMP---ITWLTMLIGNLSLIGTPFFSGFYSKDSII- 410
Query: 556 SAVKFNFCIG 565
AVK + G
Sbjct: 411 EAVKMSHLPG 420
>gi|332285006|ref|YP_004416917.1| NADH-ubiquinone oxidoreductase subunit L [Pusillimonas sp. T7-7]
gi|330428959|gb|AEC20293.1| NADH-ubiquinone oxidoreductase, chain L [Pusillimonas sp. T7-7]
Length = 666
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/274 (62%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN+ QLF GWE VG+ SYLLIGFWY++P AI AN+KAFL+NR+G
Sbjct: 138 MSNNMVQLFFGWEAVGLVSYLLIGFWYERPTAIFANMKAFLVNRVGDFGFVLGIGLLFAY 197
Query: 47 ---------------------------------------AMAKSAQFPLHTWLPDSMEGP 67
AM KSAQ PLHTWLPDSMEGP
Sbjct: 198 TGSMHYGEIFAKSDELAATVFPGTDWQMLTVACLSLFVGAMGKSAQVPLHTWLPDSMEGP 257
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SP+FE S TALS I+ IGAI A F+G+LGI+QNDIKR
Sbjct: 258 TPISALIHAATMVTAGIFMVARFSPVFEHSETALSFIMVIGAIGALFLGILGIVQNDIKR 317
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 318 VIAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 377
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFF+GFYSK+
Sbjct: 378 GLRKYMPITWITFLLGTLALVGTPFFAGFYSKEH 411
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+HTWLPD+ +E PT ++I AA M+ G + + RFS P+F + S I+ + I
Sbjct: 245 PLHTWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PVFEHSETALS-FIMVIGAIG 301
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ +VQ DIK++IAYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 302 ALFLGILGIVQNDIKRVIAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 358
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
G + + I N GG+ +P + F++ +LA P +GF + II +A
Sbjct: 359 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFAGFYSKEHIIEAA 416
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 142/307 (46%), Gaps = 30/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 128 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYERPTAIFANMKAFLVNRVGDFGF 187
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ TG++ IF + +L ++ L + VG K P
Sbjct: 188 VL-GIGLLFAYTGSMHYGEIFAKSDELAATVFPGTDWQMLTVACLSLFVGAMGKSAQVPL 246
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK----ILLILAIF 755
H W+PD +G + I L+ + T + ++ R P+ + + I++I AI
Sbjct: 247 HTWLPDSMEGPTPISALIHAATMVTAGIFMVAR-----FSPVFEHSETALSFIMVIGAIG 301
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITY 815
+L +G + I Q + KR+IAYS+++ +G M +++ S ++ IF+ F + +
Sbjct: 302 ALFLG-ILGIVQNDIKRVIAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALLF 357
Query: 816 IFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYA 875
LGA VII + ++ ++ GL + P + ++ +L G P GFY+
Sbjct: 358 ----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFAGFYS 408
Query: 876 KFFIFEK 882
K I E
Sbjct: 409 KEHIIEA 415
>gi|410694425|ref|YP_003625047.1| putative NADH-quinone oxidoreductase chain L (NADH dehydrogenase I,
chain L) (NDH-1, chain L) (NuoL) [Thiomonas sp. 3As]
gi|294340850|emb|CAZ89245.1| putative NADH-quinone oxidoreductase chain L (NADH dehydrogenase I,
chain L) (NDH-1, chain L) (NuoL) [Thiomonas sp. 3As]
Length = 676
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P A+ AN+KAF++NR
Sbjct: 136 MSNNMLQLFFGWEAVGLVSYLLIGFWYTRPTAVFANMKAFIVNRVGDFGFILGIGLLAAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 TGSLNYTEIFAKGPELALLHLPGTDWMLITVACISLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELSNTALS IL IGAITA FMG+LG++Q DIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVARMSPLFELSNTALSFILVIGAITALFMGILGVVQTDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL+AGS+II M H+QD+R+MG
Sbjct: 316 VIAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLAAGSVIIGMHHDQDMRHMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT LIG L+L G P F+GF+SKD
Sbjct: 376 GLRKYMPITWITFLIGGLALSGIPPFAGFFSKDS 409
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 105/189 (55%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I+ FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F ++
Sbjct: 229 ISLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSN 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I+ + I+ +++ ++ +VQ DIK++IAYS+++ +G++T+ L + AI
Sbjct: 287 TALS-FILVIGAITALFMGILGVVQTDIKRVIAYSTLSQLGYMTVA---LGASAYSVAIF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F++ G + + + + GG+ +P + F+I LA +P +
Sbjct: 343 HLMTHAFFKALLFLAAGSVIIGMHHDQDMRHMGGLRKYMPITWITFLIGGLALSGIPPFA 402
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 403 GFFSKDSII 411
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 143/308 (46%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI + A +K FI+ + GF
Sbjct: 126 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWYTRPTAVFANMKAFIVNRVGDFGF 185
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L TG+L IF ++ L + ++ ++ + + +G K P
Sbjct: 186 IL-GIGLLAAYTGSLNYTEIFAKGPELALLHLPGTDWMLITVACISLFIGAMGKSAQFPL 244
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 245 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSNTALSFILVIGAITALF 302
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
+ + Q + KR+IAYS+++ +G M +++ S ++ IF+ F + +
Sbjct: 303 MGILGVVQTDIKRVIAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALLF---- 355
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L A VII + ++ ++ GL + P + +I +L+G PP GF++K I
Sbjct: 356 LAAGSVIIGMHHD-----QDMRHMGGLRKYMPITWITFLIGGLALSGIPPFAGFFSKDSI 410
Query: 880 FEKIFETQ 887
E + +
Sbjct: 411 IEAVHASD 418
>gi|407327646|dbj|BAM45356.1| NADH-quinone oxidoreductase subunit M [uncultured bacterium]
Length = 519
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/365 (46%), Positives = 262/365 (71%), Gaps = 1/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI IYY LG+DG+S + +T I + +LIS I ++ +M+ LI+ ++G
Sbjct: 67 WITAPPIYYSLGLDGISFPLVLMTIGIMPLCVLISWTAITTRVRSFMAMVLIMETAMVGV 126
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F ALD +LFY+F+EA LIP++++IG WGG+NR YAAIKFFLYTL+GSLL+L+++ LYY
Sbjct: 127 FVALDFVLFYVFWEAMLIPMYLLIGVWGGANRLYAAIKFFLYTLVGSLLLLVAIFVLYYY 186
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+F+IL+ Q + Q+WLF+ FF AFA+K+P++P HTWLPDAHVEAPT GSVILA
Sbjct: 187 GGHTFDILALSQGTYPASLQMWLFLAFFAAFAVKVPMFPFHTWLPDAHVEAPTAGSVILA 246
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
+I+LK+G YG LRFSLP+ PDAS F+ +++ LS+I+IIY + +A+ Q+D+KKLIAYSS+
Sbjct: 247 SILLKMGTYGFLRFSLPMLPDASRAFTPIMVVLSIIAIIYGAYMALAQVDLKKLIAYSSV 306
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFVTLG+F+L + I+GA++QM++H + + A+F+ +G +Y + +RLI++ G+
Sbjct: 307 SHMGFVTLGLFVLNQQGIEGAVLQMVNHGITTGALFLCVGIIYERTHSRLIADNVGLAKP 366
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P ++ +IF L++ LPGT+ F+GEF++++ ++ S +I +A Y L +
Sbjct: 367 MPLYATLLVIFGLSSLGLPGTNSFVGEFLVLVGTFYWSKVATAFASLGIILAATYLLWML 426
Query: 584 KNIIF 588
+ ++F
Sbjct: 427 QRVVF 431
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 22/214 (10%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K FP HTWLPD+ +E PT A ++I A+ ++ G + R S P+ ++ A + I+ +
Sbjct: 220 KVPMFPFHTWLPDAHVEAPT-AGSVILASILLKMGTYGFLRFSLPMLPDASRAFTPIMVV 278
Query: 108 GAITAFFMGL-LGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAFFK 163
+I A G + + Q D+K++IAYS++S +G++T+GL V ++ ++ H
Sbjct: 279 LSIIAIIYGAYMALAQVDLKKLIAYSSVSHMGFVTLGLFVLNQQGIEGAVLQMVNHGITT 338
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKK 223
LFL G II H++ I + GL K MP+ +I LS +G P + F +
Sbjct: 339 GALFLCVG-IIYERTHSRLIADNVGLAKPMPLYATLLVIFGLSSLGLPGTNSFVGE---- 393
Query: 224 IWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIIL 257
FL + G W TAF +L IIL
Sbjct: 394 ----------FLVLVGTFYWSKVATAFASLGIIL 417
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 124/265 (46%), Gaps = 25/265 (9%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN--INCSVLALSLLLIIV 688
AAIK+F+ ++ S +L I +LY G F+++ L+ S+ L
Sbjct: 161 AAIKFFLYTLVGSLLLLVAIFVLYYYGG-----HTFDILALSQGTYPASLQMWLFLAFFA 215
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK- 747
+ K+ + PFH W+PD + A +++L++ + L + Y L + LP++ + +
Sbjct: 216 AFAVKVPMFPFHTWLPDAHVEAPTAGSVILAS---ILLKMGTYGFL-RFSLPMLPDASRA 271
Query: 748 ---ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNS 804
I+++L+I ++I G A+ Q + K++IAYSS++HMG + + + +
Sbjct: 272 FTPIMVVLSIIAIIYGAYMALAQVDLKKLIAYSSVSHMGFVTLGLFVLNQQGIEGAVLQM 331
Query: 805 CDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSL 864
+ G+ +F +G II + ++ D +GL + P A +++IF S
Sbjct: 332 VNHGI--TTGALFLCVG----IIYERTHSRLIADN----VGLAKPMPLYATLLVIFGLSS 381
Query: 865 AGFPPTIGFYAKFFIFEKIFETQKI 889
G P T F +F + F K+
Sbjct: 382 LGLPGTNSFVGEFLVLVGTFYWSKV 406
>gi|311104669|ref|YP_003977522.1| NADH-quinone oxidoreductase chain 12 [Achromobacter xylosoxidans
A8]
gi|310759358|gb|ADP14807.1| NADH-quinone oxidoreductase chain 12 [Achromobacter xylosoxidans
A8]
Length = 677
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 192/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLATLTLPGSDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+ ALS I+ IGAI A F+G+LGIIQNDIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDVALSFIIVIGAIGALFLGILGIIQNDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEH 412
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDVALS-FIIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEHIIEAAGA 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 144/306 (47%), Gaps = 28/306 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN++ ++ G E + L +LI ++ IF++ A + I +
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKA--FLINRVGDF 186
Query: 644 GFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGIS 697
GF+L GI +L+ GT+ +F + L + +L ++ + + +G K
Sbjct: 187 GFVL-GIGLLFAYAGTMHYGEVFAQADKLATLTLPGSDWMLLTVACICLFIGAMGKSAQV 245
Query: 698 PFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFS 756
P H W+PD +G + I L+ + T + ++ R L L + I++I AI +
Sbjct: 246 PLHAWLPDSMEGPTPISALIHAATMVTAGIFMVARF--SPLFELSDVALSFIIVIGAIGA 303
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
L +G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F + +
Sbjct: 304 LFLG-ILGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALLF- 358
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 359 ---LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSK 410
Query: 877 FFIFEK 882
I E
Sbjct: 411 EHIIEA 416
>gi|314908396|gb|ADT62145.1| NADH dehydrogenase subunit 4 [Isoetes engelmannii]
Length = 495
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 255/366 (69%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ NI + +GIDG+SL+F+ LT F+ I IL+ I+ EYM AFLI ++I
Sbjct: 74 WLPDSNINFSIGIDGISLFFVVLTTFLIPICILVGWSSIESYEKEYMIAFLICESIMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++ I L +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGIWGSRQRKIKAAYQFFLYTLLGSVFMLLA-ILLIF 192
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ ++ ++ QI L+I FF F++K+P+ P+H WLP+AHVEAPT GSVIL
Sbjct: 193 SGTGTTDVQILLTTGFSERRQILLWIAFFAFFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 252
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I+LKLG YG LRF++P+ P A+ YF+ LI TLS+I+IIY SL + QID+KK IAYSS
Sbjct: 253 AGILLKLGTYGFLRFNIPMCPVATLYFTPLIYTLSVIAIIYTSLTTIRQIDLKKNIAYSS 312
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHM F T+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ +TRL+ +GG+++
Sbjct: 313 VAHMNFGTIGMFSLNVQGIEGSILLMLSHGLVSSALFLCVGALYDRHRTRLVKYYGGLVS 372
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P FS F+ F LAN SLPGTS FIGEF++++ A + N + VL + +I AAYSL L
Sbjct: 373 TMPIFSTIFLFFILANMSLPGTSSFIGEFLVLVGAFERNSLVAVLAALGMILGAAYSLWL 432
Query: 583 SKNIIF 588
++F
Sbjct: 433 YNRVVF 438
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR----MSPLFELSNTALSI 103
K P+H WLP++ +E PT A ++I A ++ G + R M P+ L T L
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFNIPMCPVATLYFTPL-- 282
Query: 104 ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHA 160
I + I + L I Q D+K+ IAYS+++ + + T+G L V SI +++H
Sbjct: 283 IYTLSVIAIIYTSLTTIRQIDLKKNIAYSSVAHMNFGTIGMFSLNVQGIEGSILLMLSHG 342
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G+ + + + ++ GGL MPI
Sbjct: 343 LVSSALFLCVGA-LYDRHRTRLVKYYGGLVSTMPI 376
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 153/350 (43%), Gaps = 33/350 (9%)
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGN---NLLSI 604
I F ++L+ CI V S+ + Y I F++ + IMI+ +LL
Sbjct: 89 ISLFFVVLTTFLIPICILVGWSSIESYEKEYM------IAFLICESIMIAVFCMLDLLLF 142
Query: 605 YLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQS 664
Y+ E + + + ++I + +AA ++F+ +L S FML I +++ TGT ++Q
Sbjct: 143 YVFFESVLIPMFIIIGIWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLIFSGTGTTDVQ- 201
Query: 665 IFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLLLS 719
++ + L + S K+ + P H+W+P+ + G+ I+ +LL
Sbjct: 202 ---ILLTTGFSERRQILLWIAFFAFFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILL- 257
Query: 720 TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSI 779
KL + + R I + + ++ L++ ++I +++ I Q + K+ IAYSS+
Sbjct: 258 ---KLGTYGFL-RFNIPMCPVATLYFTPLIYTLSVIAIIYTSLTTIRQIDLKKNIAYSSV 313
Query: 780 AHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE 839
AHM + S+ I GL + + +F +GA L + ++T
Sbjct: 314 AHMNFGTIGMFSLNVQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR--HRTRL 363
Query: 840 LDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ + GL P + I + F+ + P T F +F + FE +
Sbjct: 364 VKYYGGLVSTMPIFSTIFLFFILANMSLPGTSSFIGEFLVLVGAFERNSL 413
>gi|332296558|ref|YP_004438481.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thermodesulfobium narugense DSM 14796]
gi|332179661|gb|AEE15350.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thermodesulfobium narugense DSM 14796]
Length = 501
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 166/365 (45%), Positives = 253/365 (69%), Gaps = 1/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI + N Y +G+DG+S+ F+ L+ IT+I + +S I KK+ E+ L++ +IG
Sbjct: 66 WIPFINAKYAVGVDGISVLFVLLSTLITVISVSVSWKAIDKKVKEFFIMILLMETSMIGV 125
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYI 343
F +LD +LFY F+EA LIP+F++IG WGG NR YA+IKF L+T GS+LML+S++ LY+
Sbjct: 126 FVSLDLLLFYAFWEAMLIPMFLLIGVWGGPNRVYASIKFVLFTFAGSVLMLVSILVLYFA 185
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+F+IL +L++ QI+LFI F +AFA+K+P++P+HTWLPDAH EAPT GSVILA
Sbjct: 186 GGHTFDILELTKLNLPVNMQIFLFIAFTLAFAVKVPMFPLHTWLPDAHTEAPTAGSVILA 245
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
++LKLG YG LRFS+P FP+A+ F +L+ LS+++I+Y + + + Q D+K+LIAYSS+
Sbjct: 246 GVLLKLGAYGFLRFSMPFFPEATLMFLSLLQVLSVVAIVYGAFVTLKQTDLKRLIAYSSV 305
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFVTLG+F LT+I + G I+QMI+H +++ A+F +G +Y + TR I+++GG+
Sbjct: 306 SHMGFVTLGLFTLTQIGMLGGILQMINHGIVTGALFCLVGMIYERTHTRQIADYGGLKPA 365
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F +F+ F+LA LPGT+ F+GEF+I+ A +G +I Y + L
Sbjct: 366 LPIFILFYTFFTLAAIGLPGTNSFMGEFLILCGAFLRFIPLGAFAVIGIILGTTYMIWLY 425
Query: 584 KNIIF 588
+ +
Sbjct: 426 YRVAY 430
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 30/218 (13%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K FPLHTWLPD+ E PT A ++I A ++ G + R S P F E + LS++
Sbjct: 219 KVPMFPLHTWLPDAHTEAPT-AGSVILAGVLLKLGAYGFLRFSMPFFPEATLMFLSLLQV 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVS-------IFHLMTH 159
+ + + + + Q D+KR+IAYS++S +G++T+GL +T++ I ++ H
Sbjct: 278 LSVVAIVYGAFVTLKQTDLKRLIAYSSVSHMGFVTLGL----FTLTQIGMLGGILQMINH 333
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LF G +I H + I + GGL +PI + L+ +G P + F +
Sbjct: 334 GIVTGALFCLVG-MIYERTHTRQIADYGGLKPALPIFILFYTFFTLAAIGLPGTNSFMGE 392
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIIL 257
FL + G L FIPL AF + IIL
Sbjct: 393 --------------FLILCGAFLRFIPLGAFAVIGIIL 416
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 125/290 (43%), Gaps = 34/290 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+LL Y E M + + +LI N +++S IK+ + S ML I +LY
Sbjct: 130 DLLLFYAFWEAMLIPMFLLIGVWGGPNRVYAS---IKFVLFTFAGSVLMLVSILVLYFAG 186
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIIT 715
G F++++L +N V L I L+F K+ + P H W+PD + A +
Sbjct: 187 G-----HTFDILELTKLNLPVNMQIFLFIAFTLAFAVKVPMFPLHTWLPDAHTEAPTAGS 241
Query: 716 LLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
++L+ KL + + R + + + +L +L++ +++ G + Q + KR+I
Sbjct: 242 VILAGVLLKLGAYGFL-RFSMPFFPEATLMFLSLLQVLSVVAIVYGAFVTLKQTDLKRLI 300
Query: 775 AYSSIAHMG---LMLFSIISIKTSHNNLIIFNS--CDSGLFYIITYIFAILGAFGVIILL 829
AYSS++HMG L LF++ I L + N LF ++ I+
Sbjct: 301 AYSSVSHMGFVTLGLFTLTQIGMLGGILQMINHGIVTGALFCLVGMIYE----------- 349
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
+ +T D + GL P L F + G P T F +F I
Sbjct: 350 RTHTRQIAD----YGGLKPALPIFILFYTFFTLAAIGLPGTNSFMGEFLI 395
>gi|330826553|ref|YP_004389856.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Alicycliphilus denitrificans K601]
gi|329311925|gb|AEB86340.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Alicycliphilus denitrificans K601]
Length = 669
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW++K AI ANLKAFL+NR
Sbjct: 134 MSNNMLQLFFGWEAVGLVSYLLIGFWFNKQSAIFANLKAFLVNRVGDFGFILGIGLIAAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 194 AGSFNYGEIFAKRQELGGLLLPGTDWQLITVACICLFIGAMGKSAQVPLHVWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFE+S+TAL+ +L IGAITA FMG LGIIQNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVSRMSPLFEMSDTALNFVLVIGAITALFMGFLGIIQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LGVSAY+V++FHLMTHAFFKALLFL AGS+I+ + HNQDIR MG
Sbjct: 314 VIAYSTLSQLGYMTVALGVSAYSVAVFHLMTHAFFKALLFLGAGSVIMGVHHNQDIRWMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G P FSGFYSK+
Sbjct: 374 GLRKYMPITWITSLLGSLALIGTPLFSGFYSKEN 407
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + R S P+F + S N ++ + I+
Sbjct: 241 PLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLF-EMSDTALNFVLVIGAIT 297
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ + ++Q DIK++IAYS+++ +G++T+ + ++ S+ A+ +++HA + +F+
Sbjct: 298 ALFMGFLGIIQNDIKRVIAYSTLSQLGYMTVAL-GVSAYSV--AVFHLMTHAFFKALLFL 354
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
G + + I GG+ +P + ++ SLA P SGF + II +A
Sbjct: 355 GAGSVIMGVHHNQDIRWMGGLRKYMPITWITSLLGSLALIGTPLFSGFYSKENIIEAA 412
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 147/310 (47%), Gaps = 28/310 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI N + A +K F++ + GF
Sbjct: 124 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKQSAIFANLKAFLVNRVGDFGF 183
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ G+ IF + L + ++ ++ + + +G K P
Sbjct: 184 IL-GIGLIAAYAGSFNYGEIFAKRQELGGLLLPGTDWQLITVACICLFIGAMGKSAQVPL 242
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + + +N+ +L+I AI +L
Sbjct: 243 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFEMSDTALNF--VLVIGAITALF 300
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR+IAYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 301 MGFL-GIIQNDIKRVIAYSTLSQLGYM---TVALGVSAYSVAVFHLMTHAFFKALLF--- 353
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ GL + P + ++ +L G P GFY+K
Sbjct: 354 -LGAGSVIMGVHHN-----QDIRWMGGLRKYMPITWITSLLGSLALIGTPLFSGFYSK-- 405
Query: 879 IFEKIFETQK 888
E I E +
Sbjct: 406 --ENIIEAAR 413
>gi|385153534|ref|YP_006234138.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pyropia haitanensis]
gi|384034937|gb|AFH57649.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pyropia haitanensis]
Length = 488
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 175/366 (47%), Positives = 255/366 (69%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIK-KKLAEYMSAFLILSGLIIGA 283
W +NIYY +GIDG+SL+FI LT ++ ILIS ++ K++ EY+ FL+L ++I
Sbjct: 69 WFPSYNIYYTIGIDGISLFFIILTTWLITTCILISWNMPNKRVKEYLICFLLLETILIQV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD + FYIFFE+ LIP+F+IIG WG R AA +FF+YTL GSLLML++++ +Y+
Sbjct: 129 FCVLDVLFFYIFFESVLIPMFLIIGIWGSRERKIRAAYQFFIYTLAGSLLMLLAILVIYF 188
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + W+ ++ QI L++ FF + A+KIP+ P H WLP+AH EAPT GSVIL
Sbjct: 189 QHGTTDIQMLWN-VNFNIRTQILLWLAFFASLAVKIPMIPFHIWLPEAHAEAPTAGSVIL 247
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A ++LK+G YG LRFSLP+FP+AS YF+ LI LS+I+ IY SL + Q+D+KK+IAYSS
Sbjct: 248 AGVLLKMGGYGFLRFSLPMFPEASLYFAPLIYLLSVIAAIYASLTTIRQVDLKKIIAYSS 307
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
++HMGFVTLG+F I+G++I M+SH L+SSA+F+ IG LY++ KTRL+ +GG +
Sbjct: 308 VSHMGFVTLGLFSFNSQGIEGSVILMLSHGLVSSALFLCIGILYDRHKTRLLKYYGGFVQ 367
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
++P FS+ FI F+ +N PGTS F+GE +I++ + + L++ ++I A YS+ L
Sbjct: 368 IMPIFSLLFIFFTFSNIGFPGTSSFVGELLILIGVFQLSPISAFLSAFSMILGAGYSIWL 427
Query: 583 SKNIIF 588
I F
Sbjct: 428 FNRICF 433
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIIL 105
K P H WLP++ E PT A ++I A ++ G + R S P+F E S +I
Sbjct: 221 VKIPMIPFHIWLPEAHAEAPT-AGSVILAGVLLKMGGYGFLRFSLPMFPEASLYFAPLIY 279
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTH 159
+ I A + L I Q D+K+IIAYS++S +G++T+GL G+ S+ +++H
Sbjct: 280 LLSVIAAIYASLTTIRQVDLKKIIAYSSVSHMGFVTLGLFSFNSQGIEG---SVILMLSH 336
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G I+ + + ++ GG + MPI + + S +G P S F
Sbjct: 337 GLVSSALFLCIG-ILYDRHKTRLLKYYGGFVQIMPIFSLLFIFFTFSNIGFPGTSSF 392
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 173/386 (44%), Gaps = 36/386 (9%)
Query: 508 QMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVL 567
++KT L F IN P +++++ I G G I F IIL+ CI +
Sbjct: 55 ELKTSLF-QFIYTINWFPSYNIYYTI---------GIDG-ISLFFIILTTWLITTCILIS 103
Query: 568 TSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSI---YLGLELMSLTLCVLIASQKN 624
+ Y +C F+L + I+I +L + Y+ E + + + ++I +
Sbjct: 104 WNMPNKRVKEYLIC------FLLLETILIQVFCVLDVLFFYIFFESVLIPMFLIIGIWGS 157
Query: 625 NIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLL 684
AA ++FI + S ML I ++Y GT ++Q ++NV N N L L
Sbjct: 158 RERKIRAAYQFFIYTLAGSLLMLLAILVIYFQHGTTDIQMLWNV----NFNIRTQILLWL 213
Query: 685 LIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVI 743
L+ K+ + PFH+W+P+ + A +++L+ K+ + + R + +
Sbjct: 214 AFFASLAVKIPMIPFHIWLPEAHAEAPTAGSVILAGVLLKMGGYGFL-RFSLPMFPEASL 272
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
+ ++ +L++ + I +++ I Q + K++IAYSS++HMG + + S + +
Sbjct: 273 YFAPLIYLLSVIAAIYASLTTIRQVDLKKIIAYSSVSHMGFVTLGLFSFNSQGIEGSVIL 332
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
GL + + +F +G IL +KT L + G Q P +L+ + F FS
Sbjct: 333 MLSHGL--VSSALFLCIG-----ILYDR---HKTRLLKYYGGFVQIMPIFSLLFIFFTFS 382
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKI 889
GFP T F + I +F+ I
Sbjct: 383 NIGFPGTSSFVGELLILIGVFQLSPI 408
>gi|358051043|ref|YP_004935300.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene noctiflora]
gi|343526948|gb|AEM46205.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene noctiflora]
Length = 495
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 180/366 (49%), Positives = 258/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ +I+ EY+ A LI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVLLTTFLIPICILVGWANIRSYGKEYIIASLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+ E+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML+ ++ +
Sbjct: 134 FCMLDLLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + Q++L++ FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 ETGTTDLQILLSTEFS--ERRQLFLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNFVTIGMFSLNIQGIGGSILSMLSHGLVSSALFLCVGVLYDRHKTRLLRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F+ F+LAN SLPGTS F+GEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFLFFTLANMSLPGTSSFVGEFLILVGAFQRNSLVATLAAIGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILSMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLLRYYGGLVSTMP 375
Score = 47.4 bits (111), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
+AA ++F+ +L S FML GI ++ TGT +LQ + + + + L L+
Sbjct: 168 KAAYQFFLYTLLGSVFMLLGILLILLETGTTDLQILLST-EFSERRQLFLWLAFF---AS 223
Query: 690 LSFKLGISPFHMWVPDVYQGA----SII---ITLLLSTTPKLSLFVIIYRLLIKCLLPLV 742
+ K+ + P H+W+P+ + A S+I I L L T L + ++ C P +
Sbjct: 224 FAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFI 283
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
L+ ++I +++ + Q + K++IAYSS+AHM + + S+ I
Sbjct: 284 YT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSIL 336
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ GL + + +F +G +L + +KT L + GL P + I + F
Sbjct: 337 SMLSHGL--VSSALFLCVG------VLYDR--HKTRLLRYYGGLVSTMPNFSTIFLFFTL 386
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ P T F +F I F+ +
Sbjct: 387 ANMSLPGTSSFVGEFLILVGAFQRNSL 413
>gi|347818880|ref|ZP_08872314.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 672
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/274 (61%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGFW+ KP A+ AN+KAFL+NR
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWFHKPSAVFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 202 TGTLNYAEVFFQAGRLGGLTLPGTDWMLISAICICLFIGAMGKSAQFPLHVWLPDSMEGP 261
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELS+TAL++IL +GAITA FMG LGI+QNDIKR
Sbjct: 262 TPISALIHAATMVTAGIFMVARMSPLFELSDTALNLILVVGAITALFMGFLGIVQNDIKR 321
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+ ++FHLMTHAFFKALLFL AGS+I+ + HNQD+R MG
Sbjct: 322 VVAYSTLSQLGYMTVALGASAYSAAVFHLMTHAFFKALLFLGAGSVIMGLHHNQDMRWMG 381
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
L ++MPIT ITSL+G L+L+GAP F+GFYSKD
Sbjct: 382 ALRRHMPITWITSLLGSLALIGAPLFAGFYSKDS 415
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F + S
Sbjct: 235 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLF-ELS 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
NLI+ + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 292 DTALNLILVVGAITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTVA---LGASAYSAAVF 348
Query: 487 QMISHALISSAMFISIG 503
+++HA + +F+ G
Sbjct: 349 HLMTHAFFKALLFLGAG 365
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 138/304 (45%), Gaps = 22/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI + + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWFHKPSAVFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ TGTL +F + L + +++ + + +G K P
Sbjct: 192 IL-GIGLIAAYTGTLNYAEVFFQAGRLGGLTLPGTDWMLISAICICLFIGAMGKSAQFPL 250
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L ++L++ + +
Sbjct: 251 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALNLILVVGAITALF 308
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
I Q + KR++AYS+++ +G M +++ S + +F+ F + +
Sbjct: 309 MGFLGIVQNDIKRVVAYSTLSQLGYM---TVALGASAYSAAVFHLMTHAFFKALLF---- 361
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
LGA VI+ L +N ++ L + P + ++ +L G P GFY+K I
Sbjct: 362 LGAGSVIMGLHHN-----QDMRWMGALRRHMPITWITSLLGSLALIGAPLFAGFYSKDSI 416
Query: 880 FEKI 883
+ +
Sbjct: 417 IDAV 420
>gi|319761773|ref|YP_004125710.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Alicycliphilus denitrificans BC]
gi|317116334|gb|ADU98822.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Alicycliphilus denitrificans BC]
Length = 669
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFW++K AI ANLKAFL+NR
Sbjct: 134 MSNNMLQLFFGWEAVGLVSYLLIGFWFNKQSAIFANLKAFLVNRVGDFGFILGIGLIAAY 193
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 194 AGSFNYGEIFAKRQELGGLLLPGTDWQLITVACICLFIGAMGKSAQVPLHVWLPDSMEGP 253
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFE+S+TAL+ +L IGAITA FMG LGIIQNDIKR
Sbjct: 254 TPISALIHAATMVTAGIFMVSRMSPLFEMSDTALNFVLVIGAITALFMGFLGIIQNDIKR 313
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LGVSAY+V++FHLMTHAFFKALLFL AGS+I+ + HNQDIR MG
Sbjct: 314 VIAYSTLSQLGYMTVALGVSAYSVAVFHLMTHAFFKALLFLGAGSVIMGVHHNQDIRWMG 373
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSL+G L+L+G P FSGFYSK+
Sbjct: 374 GLRKYMPITWITSLLGSLALIGTPLFSGFYSKEN 407
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + R S P+F + S N ++ + I+
Sbjct: 241 PLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLF-EMSDTALNFVLVIGAIT 297
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ + ++Q DIK++IAYS+++ +G++T+ + ++ S+ A+ +++HA + +F+
Sbjct: 298 ALFMGFLGIIQNDIKRVIAYSTLSQLGYMTVAL-GVSAYSV--AVFHLMTHAFFKALLFL 354
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
G + + I GG+ +P + ++ SLA P SGF + II +A
Sbjct: 355 GAGSVIMGVHHNQDIRWMGGLRKYMPITWITSLLGSLALIGTPLFSGFYSKENIIEAA 412
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 147/310 (47%), Gaps = 28/310 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI N + A +K F++ + GF
Sbjct: 124 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKQSAIFANLKAFLVNRVGDFGF 183
Query: 646 MLYGISILYGITGTLELQSIFNVIK------LNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI ++ G+ IF + L + ++ ++ + + +G K P
Sbjct: 184 IL-GIGLIAAYAGSFNYGEIFAKRQELGGLLLPGTDWQLITVACICLFIGAMGKSAQVPL 242
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFSLI 758
H+W+PD +G + I L+ + T + ++ R+ + + +N+ +L+I AI +L
Sbjct: 243 HVWLPDSMEGPTPISALIHAATMVTAGIFMVSRMSPLFEMSDTALNF--VLVIGAITALF 300
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR+IAYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 301 MGFL-GIIQNDIKRVIAYSTLSQLGYM---TVALGVSAYSVAVFHLMTHAFFKALLF--- 353
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VI+ + +N ++ GL + P + ++ +L G P GFY+K
Sbjct: 354 -LGAGSVIMGVHHN-----QDIRWMGGLRKYMPITWITSLLGSLALIGTPLFSGFYSK-- 405
Query: 879 IFEKIFETQK 888
E I E +
Sbjct: 406 --ENIIEAAR 413
>gi|269836333|ref|YP_003318561.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sphaerobacter thermophilus DSM 20745]
gi|269785596|gb|ACZ37739.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sphaerobacter thermophilus DSM 20745]
Length = 527
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 180/370 (48%), Positives = 257/370 (69%), Gaps = 6/370 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ + Y G+DG+S+ I L+ +T I I+ S I+ ++ EYM L+L ++G
Sbjct: 69 WLPALGVSYHFGVDGISVLLIVLSTLLTTIGIVASWSSIQHRVREYMITMLMLETGMLGV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLY-- 341
F +LD LFYIF+E LIP+ ++IG WG +NR YAA+KFFLYTL GSLLML+ +I LY
Sbjct: 129 FVSLDLFLFYIFWEVMLIPMALLIGVWGSANRVYAAVKFFLYTLAGSLLMLVGIIALYQS 188
Query: 342 YISN---KSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEG 398
Y ++ ++L Q + Q+W+F FFIAFAIK+P+WP HTWLPDAHVEAPT G
Sbjct: 189 YFEQTGIRTLDVLQLQQGNYGYTFQMWVFAAFFIAFAIKVPMWPFHTWLPDAHVEAPTAG 248
Query: 399 SVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLI 458
SV+LA ++LK+G YGLLRF+LP+FPDA+ ++ +II LS+I IIY +L+A+VQ D+KKL+
Sbjct: 249 SVLLAGVLLKMGGYGLLRFNLPLFPDAARDWAPVIIVLSVIGIIYGALVALVQPDLKKLV 308
Query: 459 AYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFG 518
AYSS++HMGFVTLGIF + GA+I M+SH L++SA+F+ +G +Y++ TRLIS FG
Sbjct: 309 AYSSVSHMGFVTLGIFAFNAQGLYGAMIVMLSHGLVTSALFLCVGVIYDRGHTRLISRFG 368
Query: 519 GIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAY 578
G+ +P ++ F +F+ A+ LPG SGF+GEF+ IL A + GV+ +IFSA Y
Sbjct: 369 GLATNMPVYASFLGLFTFASLGLPGLSGFVGEFLSILGAFRAERAAGVIAFLVVIFSAWY 428
Query: 579 SLCLSKNIIF 588
L + + + +
Sbjct: 429 MLWMYQRVAW 438
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFI 107
K +P HTWLPD+ +E PT S L+ + G ++ PLF + + +I+ +
Sbjct: 227 KVPMWPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFNLPLFPDAARDWAPVIIVL 286
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIFH-----LMTHAFF 162
I + L+ ++Q D+K+++AYS++S +G++T LG+ A+ + +++H
Sbjct: 287 SVIGIIYGALVALVQPDLKKLVAYSSVSHMGFVT--LGIFAFNAQGLYGAMIVMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSL--VGAPFFSGFYSK 219
+ LFL G +I + H + I GGL MP+ S +GL + +G P SGF +
Sbjct: 345 TSALFLCVG-VIYDRGHTRLISRFGGLATNMPVYA--SFLGLFTFASLGLPGLSGFVGE 400
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 59/314 (18%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L Y+ E+M + + +LI N ++ AA+K+F+ + S ML GI LY
Sbjct: 133 DLFLFYIFWEVMLIPMALLIGVWGSANRVY---AAVKFFLYTLAGSLLMLVGIIALY--- 186
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGIS--------------PFHMWV 703
QS F + ++ L L G +F++ + PFH W+
Sbjct: 187 -----QSYFEQTGIRTLDV----LQLQQGNYGYTFQMWVFAAFFIAFAIKVPMWPFHTWL 237
Query: 704 PDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPL----VINWQKILLILAIFSLII 759
PD + A ++LL+ L + L++ LPL +W ++++L++ +I
Sbjct: 238 PDAHVEAPTAGSVLLAGV----LLKMGGYGLLRFNLPLFPDAARDWAPVIIVLSVIGIIY 293
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTS--HNNLIIFNS---CDSGLFYIIT 814
G + A+ Q + K+++AYSS++HMG + I + + +I+ S S LF +
Sbjct: 294 GALVALVQPDLKKLVAYSSVSHMGFVTLGIFAFNAQGLYGAMIVMLSHGLVTSALFLCVG 353
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
I+ T + F GL P A + +F F+ G P GF
Sbjct: 354 VIY---------------DRGHTRLISRFGGLATNMPVYASFLGLFTFASLGLPGLSGFV 398
Query: 875 AKFFIFEKIFETQK 888
+F F ++
Sbjct: 399 GEFLSILGAFRAER 412
>gi|976350|gb|AAA75278.1| NADH dehydrogenase subunit 4 [Lactuca sativa]
Length = 495
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 180/366 (49%), Positives = 254/366 (69%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI+++LGIDG+SL+F+ LT F+ I IL+ ++ EY++A LI L+I
Sbjct: 74 WLPYENIHFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLIS-MIYLY 341
F LD +LFY+ E+ LIP+FIIIG WG R AA + FLYTL+GS+ ML++ ++ L+
Sbjct: 134 FRMLDPLLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F L I G+I+ M+SH L+SSA+F+ +G LY + KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYVRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G L + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G + + K + +R GGL MP
Sbjct: 346 SALFLCVGVLYVRHK-TRLVRYYGGLVSTMP 375
Score = 46.6 bits (109), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 31/277 (11%)
Query: 620 ASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVL 679
S++ I +AA + F+ +L S FML I ++ TGT +LQ I + + L
Sbjct: 161 GSRQRKI---KAAYQLFLYTLLGSVFMLLAILLILFQTGTTDLQ-ILLTTEFSERRQIFL 216
Query: 680 ALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLSTTPKLSLFVIIYR 732
++ + K+ + P H+W+P+ + A S+I I L L T L + ++
Sbjct: 217 WIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFP 273
Query: 733 LLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
C P + L+ ++I +++ + Q + K++IAYSS+AHM L+ + S+
Sbjct: 274 EATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSL 326
Query: 793 KTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPW 852
I GL + + +F +G V +KT + + GL P
Sbjct: 327 NIQGIGGSILLMLSHGL--VSSALFLCVGVLYV--------RHKTRLVRYYGGLVSTMPN 376
Query: 853 CALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ I F + P T F +F I F+ +
Sbjct: 377 FSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>gi|296136695|ref|YP_003643937.1| hypothetical protein Tint_2257 [Thiomonas intermedia K12]
gi|295796817|gb|ADG31607.1| hypothetical protein Tint_2257 [Thiomonas intermedia K12]
Length = 676
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/274 (62%), Positives = 193/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P A+ AN+KAF++NR
Sbjct: 136 MSNNMLQLFFGWEAVGLVSYLLIGFWYTRPTAVFANMKAFIVNRVGDFGFILGIGLLAAY 195
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 196 TGSLNYTEIFAKGPELALLHLPGTDWMLITVACISLFIGAMGKSAQFPLHVWLPDSMEGP 255
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ RMSPLFELSNTALS IL IGA TA FMG+LG++Q DIKR
Sbjct: 256 TPISALIHAATMVTAGIFMVARMSPLFELSNTALSFILVIGATTALFMGILGVVQTDIKR 315
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL+AGS+II M H+QD+R+MG
Sbjct: 316 VIAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLAAGSVIIGMHHDQDMRHMG 375
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT LIG L+L G P F+GF+SKD
Sbjct: 376 GLRKYMPITWITFLIGGLALSGIPPFAGFFSKDS 409
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 104/189 (55%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I+ FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F ++
Sbjct: 229 ISLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSN 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I+ + + +++ ++ +VQ DIK++IAYS+++ +G++T+ L + AI
Sbjct: 287 TALS-FILVIGATTALFMGILGVVQTDIKRVIAYSTLSQLGYMTVA---LGASAYSVAIF 342
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F++ G + + + + GG+ +P + F+I LA +P +
Sbjct: 343 HLMTHAFFKALLFLAAGSVIIGMHHDQDMRHMGGLRKYMPITWITFLIGGLALSGIPPFA 402
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 403 GFFSKDSII 411
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 143/308 (46%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN+L ++ G E + L +LI + A +K FI+ + GF
Sbjct: 126 LFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWYTRPTAVFANMKAFIVNRVGDFGF 185
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L TG+L IF ++ L + ++ ++ + + +G K P
Sbjct: 186 IL-GIGLLAAYTGSLNYTEIFAKGPELALLHLPGTDWMLITVACISLFIGAMGKSAQFPL 244
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L +L++ + +
Sbjct: 245 HVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSNTALSFILVIGATTALF 302
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
+ + Q + KR+IAYS+++ +G M +++ S ++ IF+ F + +
Sbjct: 303 MGILGVVQTDIKRVIAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALLF---- 355
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L A VII + ++ ++ GL + P + +I +L+G PP GF++K I
Sbjct: 356 LAAGSVIIGMHHD-----QDMRHMGGLRKYMPITWITFLIGGLALSGIPPFAGFFSKDSI 410
Query: 880 FEKIFETQ 887
E + +
Sbjct: 411 IEAVHASD 418
>gi|409405603|ref|ZP_11254065.1| NADH-ubiquinone oxidoreductase subunit N [Herbaspirillum sp. GW103]
gi|386434152|gb|EIJ46977.1| NADH-ubiquinone oxidoreductase subunit N [Herbaspirillum sp. GW103]
Length = 499
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 165/316 (52%), Positives = 228/316 (72%), Gaps = 2/316 (0%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LGQM+MISGN+ LSIYLGLELMSL+L L+A ++++ S+EA +KYFILG L+SGF+LY
Sbjct: 116 LLGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLY 175
Query: 649 GISILYGITG-TLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY 707
G+S+LYG TG LEL +F I ++ + L ++ ++ GL+FKLG PFHMWVPDVY
Sbjct: 176 GMSMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVY 235
Query: 708 QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQ 767
QG+ +TLLL PKL+ F I +RLL++ +LPL ++WQ++L++LA+ S+I+GNV+AI Q
Sbjct: 236 QGSPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQ 295
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
N KRM+AYS+I+HMG ML ++S N N+ S LFY +TY+ LG+FGVII
Sbjct: 296 TNIKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVII 355
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
LL + + D L+ F GL+QR+PW A +MMI MFSLAG PP +GFYAK + + T
Sbjct: 356 LLSRSGF-EADTLEDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATG 414
Query: 888 KIWLLLLIIMCSLIGA 903
+IWL +L ++ SLIGA
Sbjct: 415 QIWLPVLAVIFSLIGA 430
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAAT-MVTAGIFMITRMSPLFELSNTALSIILFI 107
K P H W+PD +G PTP + L+ AA + T I + + L+ +++ +
Sbjct: 221 KLGAVPFHMWVPDVYQGSPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVL 280
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-----------GVSAYTVSIFHL 156
++ + I Q +IKR++AYST+S +G+M +G+ V+AY+ S+F+
Sbjct: 281 AVLSIILGNVTAIAQTNIKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYA 340
Query: 157 MTHAF-----FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
+T+ F ++ LS + + GL + P +I + SL G P
Sbjct: 341 VTYVITTLGSFGVIILLSRSGF-----EADTLEDFKGLNQRSPWFAAVMMIMMFSLAGIP 395
Query: 212 FFSGFYSK 219
GFY+K
Sbjct: 396 PLVGFYAK 403
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 130/265 (49%), Gaps = 33/265 (12%)
Query: 318 AAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSIT-KIEQIWLF--ITFFIA- 373
A +K+F+ + S +L M LY + + + + ++ +++ L I F +A
Sbjct: 158 AGMKYFILGALASGFLLYGMSMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAG 217
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG-----LLRFSLPIFPDASYY 428
A K+ P H W+PD + +PT +++L A KL + L+ LP+ D
Sbjct: 218 LAFKLGAVPFHMWVPDVYQGSPTPVTLLLGAAP-KLATFAITFRLLVEGMLPLAVD---- 272
Query: 429 FSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQM 488
+ +++ L+++SII ++ A+ Q +IK+++AYS+I+HMGF+ LG M++ + + G +
Sbjct: 273 WQQMLMVLAVLSIILGNVTAIAQTNIKRMLAYSTISHMGFMLLG--MMSGV-VDGNLFSA 329
Query: 489 ISHALISSAMFISIGFLYNQM--------------KTRLISNFGGIINVIPHFSVFFIIF 534
++ SS++F ++ ++ + + + +F G+ P F+ +I
Sbjct: 330 VNA--YSSSLFYAVTYVITTLGSFGVIILLSRSGFEADTLEDFKGLNQRSPWFAAVMMIM 387
Query: 535 SLANCSLPGTSGFIGEFMIILSAVK 559
+ +P GF + ++ +A+
Sbjct: 388 MFSLAGIPPLVGFYAKLSVLQAAMA 412
>gi|353255888|gb|AEQ75418.1| NADH quinone oxidoreductase M subunit [Leptospirillum ferriphilum]
Length = 500
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 178/380 (46%), Positives = 266/380 (70%), Gaps = 1/380 (0%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
+TC+ LI L L+G S + +WI + NI+Y LG+DG+S+ I +T F+ +
Sbjct: 43 LTCVEFLISLDLLLGMHHGSYQMQFTEDHLWIPFANIHYSLGVDGISIVLIVMTTFLLPM 102
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
+L S I ++ E+M LIL G+++ F A D +LFY+F+EA LIP+++IIG WGG
Sbjct: 103 CVLTSWKGISTRVVEFMMTLLILEGIMVAVFSATDFVLFYVFWEAMLIPMYLIIGVWGGP 162
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIA 373
NR YA IKFFLYTL GSLL+L+ +I LY++ +FNI+ ++ Q + F+ F A
Sbjct: 163 NRLYATIKFFLYTLAGSLLLLLVIISLYFVGGHTFNIVQLMGQHYSRTFQDFAFLAMFAA 222
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
FA+K+P++P HTWLPDAHVEAPT GSVILA++MLK+G YG LRFSLP+FPDAS++F+ LI
Sbjct: 223 FAVKVPMFPFHTWLPDAHVEAPTAGSVILASVMLKMGAYGFLRFSLPMFPDASHFFTPLI 282
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHAL 493
LSL II+ +++A+ Q D+KKLIAYSS++HMG VTLGIF+ I+GA++ MI+H +
Sbjct: 283 FGLSLAGIIWGAMMALAQEDMKKLIAYSSVSHMGIVTLGIFVFNYQGIEGAMMGMINHGV 342
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
+ A+F+ +G LY++ +R +S++GGI V+P FS F+IFS+++ LPG + F+GEF++
Sbjct: 343 TTGALFLCVGVLYDRTHSRQLSDYGGIAKVMPIFSTMFMIFSMSSLGLPGLNSFVGEFLV 402
Query: 554 ILSAVKFNFCIGVLTSTALI 573
+L + + + L +T ++
Sbjct: 403 LLGTFRTHMALATLATTVIV 422
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K FP HTWLPD+ +E PT A ++I A+ M+ G + R S P+F ++ + ++F
Sbjct: 226 KVPMFPFHTWLPDAHVEAPT-AGSVILASVMLKMGAYGFLRFSLPMFPDASHFFTPLIFG 284
Query: 108 GAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAY---TVSIFHLMTHAFFK 163
++ G ++ + Q D+K++IAYS++S +G +T+G+ V Y ++ ++ H
Sbjct: 285 LSLAGIIWGAMMALAQEDMKKLIAYSSVSHMGIVTLGIFVFNYQGIEGAMMGMINHGVTT 344
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H++ + + GG+ K MPI +I +S +G P + F +
Sbjct: 345 GALFLCVG-VLYDRTHSRQLSDYGGIAKVMPIFSTMFMIFSMSSLGLPGLNSFVGE 399
Score = 48.5 bits (114), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 93/199 (46%), Gaps = 18/199 (9%)
Query: 693 KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKI 748
K+ + PFH W+PD + A +++L++ + L + Y L + LP+ + + +
Sbjct: 226 KVPMFPFHTWLPDAHVEAPTAGSVILAS---VMLKMGAYGFL-RFSLPMFPDASHFFTPL 281
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ L++ +I G + A+ Q + K++IAYSS++HMG++ I + +
Sbjct: 282 IFGLSLAGIIWGAMMALAQEDMKKLIAYSSVSHMGIVTLGIFVFN--------YQGIEGA 333
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
+ +I + F + +L + T ++ +L + G+ + P + + MIF S G P
Sbjct: 334 MMGMINHGVTTGALFLCVGVLYDRTHSR--QLSDYGGIAKVMPIFSTMFMIFSMSSLGLP 391
Query: 869 PTIGFYAKFFIFEKIFETQ 887
F +F + F T
Sbjct: 392 GLNSFVGEFLVLLGTFRTH 410
>gi|421482741|ref|ZP_15930321.1| NADH-quinone oxidoreductase chain 12 [Achromobacter piechaudii HLE]
gi|400199052|gb|EJO32008.1| NADH-quinone oxidoreductase chain 12 [Achromobacter piechaudii HLE]
Length = 680
Score = 336 bits (862), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 191/274 (69%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLAAMTLPGSDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+ ALS I+ IGAI A F+G+LGIIQ DIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDVALSFIIVIGAIGALFLGILGIIQTDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEN 412
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDVALS-FIIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKENIIEAAGH 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 142/304 (46%), Gaps = 24/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F + L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYGEVFAQADKLAAMTLPGSDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R L L + I++I AI +L
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARF--SPLFELSDVALSFIIVIGAIGALF 305
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F + +
Sbjct: 306 LG-ILGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALLF--- 358
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 359 -LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEN 412
Query: 879 IFEK 882
I E
Sbjct: 413 IIEA 416
>gi|293603930|ref|ZP_06686345.1| NADH-quinone oxidoreductase subunit L [Achromobacter piechaudii
ATCC 43553]
gi|292817767|gb|EFF76833.1| NADH-quinone oxidoreductase subunit L [Achromobacter piechaudii
ATCC 43553]
Length = 676
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 191/274 (69%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLAAMTLPGSDWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+ ALS I+ IGAI A F+G+LGIIQ DIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDVALSFIIVIGAIGALFLGILGIIQTDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDIRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEN 412
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDVALS-FIIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKENIIEAAGH 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 142/304 (46%), Gaps = 24/304 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F + L + +L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYGEVFAQADKLAAMTLPGSDWMLLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R L L + I++I AI +L
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARF--SPLFELSDVALSFIIVIGAIGALF 305
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F + +
Sbjct: 306 LG-ILGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALLF--- 358
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ ++ GL + P + ++ +L G P GFY+K
Sbjct: 359 -LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKEN 412
Query: 879 IFEK 882
I E
Sbjct: 413 IIEA 416
>gi|91204903|ref|YP_537258.1| NADH dehydrogenase subunit M [Rickettsia bellii RML369-C]
gi|122426095|sp|Q1RKE5.1|NUOM_RICBR RecName: Full=NADH-quinone oxidoreductase subunit M; AltName:
Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1
subunit M
gi|91068447|gb|ABE04169.1| NADH dehydrogenase I chain M [Rickettsia bellii RML369-C]
Length = 494
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 182/381 (47%), Positives = 263/381 (69%), Gaps = 8/381 (2%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +GIDG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYSWLDKIGLEFHVGIDGISIFFVSLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ ++FY+FFE L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSINLLVFYLFFEVILVPMYIIIGVWGGENRIYAAVKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS---ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
S+IY+Y SF++ + + + ++QI L+ FIAFAIKIP+ P HTWLPDAHV
Sbjct: 186 SIIYIYS-KIHSFDLSNIGEFTNNFPLHVQQI-LWWAIFIAFAIKIPMIPFHTWLPDAHV 243
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
+APT GSVILA I+LKLG YG LR LP+ P+AS F+ +I LS+I+IIY SL+A+ Q
Sbjct: 244 QAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALAQK 303
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KK+IAYSSI HMG+VT+GIF T + GA+ QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 304 DMKKMIAYSSITHMGYVTIGIFSFTDSGVSGALFQMLSHGIISSCLFLIVGTLYERLHTK 363
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N L + +
Sbjct: 364 EIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFLAALGI 423
Query: 573 IFSAAYSLCLSKNIIFVLGQM 593
I A Y L L K ++ LG++
Sbjct: 424 ILGAIYMLKLYKEVM--LGEI 442
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL ++ +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS ++F +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSITHMGYVTIGIFSFTDSGVSG---ALFQMLSHGI 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E++ + + ++I +N I+ AA+K+F+ S F L I +Y
Sbjct: 138 NLLVFYLFFEVILVPMYIIIGVWGGENRIY---AAVKFFLYTFFGSVFFLLSIIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L +I NN V + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLSNIGEFT--NNFPLHVQQILWWAIFIAFAIKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL+ N + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSI HMG + I S S + +F G+ I + +F I+G
Sbjct: 305 MKKMIAYSSITHMGYVTIGIFSFTDSGVSGALFQMLSHGI--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>gi|415906405|ref|ZP_11552700.1| NADH dehydrogenase I chain N [Herbaspirillum frisingense GSF30]
gi|407763127|gb|EKF71844.1| NADH dehydrogenase I chain N [Herbaspirillum frisingense GSF30]
Length = 502
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/316 (52%), Positives = 228/316 (72%), Gaps = 2/316 (0%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LGQM+MISGN+ LSIYLGLELMSL+L L+A ++++ S+EA +KYFILG L+SGF+LY
Sbjct: 119 LLGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLY 178
Query: 649 GISILYGITG-TLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY 707
G+S+LYG TG LEL +F I ++ + L ++ ++ GL+FKLG PFHMWVPDVY
Sbjct: 179 GMSMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVY 238
Query: 708 QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQ 767
QG+ +TLLL PKL+ F I +RLL++ +LPL ++WQ++L++LA+ S+I+GNV+AI Q
Sbjct: 239 QGSPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQ 298
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
N KRM+AYS+I+HMG ML ++S N N+ S LFY +TY+ LG+FGVII
Sbjct: 299 TNIKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVII 358
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
LL + + D L+ F GL+QR+PW A +MMI MFSLAG PP +GFYAK + + T
Sbjct: 359 LLSRSGF-EADTLEDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATG 417
Query: 888 KIWLLLLIIMCSLIGA 903
+IWL +L ++ SLIGA
Sbjct: 418 QIWLPVLAVIFSLIGA 433
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAAT-MVTAGIFMITRMSPLFELSNTALSIILFI 107
K P H W+PD +G PTP + L+ AA + T I + + L+ +++ +
Sbjct: 224 KLGAVPFHMWVPDVYQGSPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVL 283
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-----------GVSAYTVSIFHL 156
++ + I Q +IKR++AYST+S +G+M +G+ V+AY+ S+F+
Sbjct: 284 AVLSIILGNVTAIAQTNIKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYA 343
Query: 157 MTHAF-----FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
+T+ F ++ LS + + GL + P +I + SL G P
Sbjct: 344 VTYVITTLGSFGVIILLSRSGF-----EADTLEDFKGLNQRSPWFAAVMMIMMFSLAGIP 398
Query: 212 FFSGFYSK 219
GFY+K
Sbjct: 399 PLVGFYAK 406
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 130/265 (49%), Gaps = 33/265 (12%)
Query: 318 AAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSIT-KIEQIWLF--ITFFIA- 373
A +K+F+ + S +L M LY + + + + ++ +++ L I F +A
Sbjct: 161 AGMKYFILGALASGFLLYGMSMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAG 220
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG-----LLRFSLPIFPDASYY 428
A K+ P H W+PD + +PT +++L A KL + L+ LP+ D
Sbjct: 221 LAFKLGAVPFHMWVPDVYQGSPTPVTLLLGAAP-KLATFAITFRLLVEGMLPLAVD---- 275
Query: 429 FSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQM 488
+ +++ L+++SII ++ A+ Q +IK+++AYS+I+HMGF+ LG M++ + + G +
Sbjct: 276 WQQMLMVLAVLSIILGNVTAIAQTNIKRMLAYSTISHMGFMLLG--MMSGV-VDGNLFSA 332
Query: 489 ISHALISSAMFISIGFLYNQM--------------KTRLISNFGGIINVIPHFSVFFIIF 534
++ SS++F ++ ++ + + + +F G+ P F+ +I
Sbjct: 333 VNA--YSSSLFYAVTYVITTLGSFGVIILLSRSGFEADTLEDFKGLNQRSPWFAAVMMIM 390
Query: 535 SLANCSLPGTSGFIGEFMIILSAVK 559
+ +P GF + ++ +A+
Sbjct: 391 MFSLAGIPPLVGFYAKLSVLQAAMA 415
>gi|383644199|ref|ZP_09956605.1| NADH-quinone oxidoreductase subunit M [Sphingomonas elodea ATCC
31461]
Length = 521
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 246/361 (68%), Gaps = 4/361 (1%)
Query: 230 NIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFCALD 288
+ + LGIDG + I L+ F+ I I S L + K++ EYM+AFL L+IG F A D
Sbjct: 75 DFKWALGIDGFAFLLIELSLFLMPICIGASWLSVTKRVPEYMAAFLATEVLMIGTFAAQD 134
Query: 289 GMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNKS 347
LFYIFFE LIP+++IIG WGG NR YA+ KFFLYTL+GSLLML++MI++ S
Sbjct: 135 LFLFYIFFEGGLIPMYLIIGIWGGVNRIYASYKFFLYTLLGSLLMLVAMIFMVLNTGTTS 194
Query: 348 FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIML 407
+L H Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++L
Sbjct: 195 IPVLMAHDFPAN--WQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLL 252
Query: 408 KLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMG 467
KLG YG LRFSLP+FP AS F ++ LS ++++Y SL+A+VQ D+KKLIAYSS+AHM
Sbjct: 253 KLGGYGFLRFSLPMFPVASVQFMWVVFGLSCVAVVYTSLVALVQSDMKKLIAYSSVAHMA 312
Query: 468 FVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHF 527
VT+G+F I GA++ M+ H ++S A+F+ +G +Y+++ TR I +GG+ +P +
Sbjct: 313 IVTMGLFAFNANGIDGAMMVMLGHGVVSGALFLCVGIIYDRLHTREIDRYGGLAINMPRY 372
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNII 587
+V F++F++A+ LPGTS F+GEF + + + ++ +T +I AAY L L + ++
Sbjct: 373 AVLFLLFTMASIGLPGTSNFVGEFFSLAGVYQVSTWTALIGTTGIILGAAYMLYLFRRVV 432
Query: 588 F 588
+
Sbjct: 433 W 433
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + R S P+F +++ ++F
Sbjct: 222 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGFLRFSLPMFPVASVQFMWVVFG 280
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ + + L+ ++Q+D+K++IAYS+++ + +T+GL + ++ ++ H
Sbjct: 281 LSCVAVVYTSLVALVQSDMKKLIAYSSVAHMAIVTMGLFAFNANGIDGAMMVMLGHGVVS 340
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G II + H ++I GGL MP + L+ ++ +G P S F +
Sbjct: 341 GALFLCVG-IIYDRLHTREIDRYGGLAINMPRYAVLFLLFTMASIGLPGTSNFVGE 395
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 139/328 (42%), Gaps = 35/328 (10%)
Query: 588 FVLGQMIMI---SGNNLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILS 642
F+ +++MI + +L Y+ E L+ + L + I N I++S K+F+ +L
Sbjct: 119 FLATEVLMIGTFAAQDLFLFYIFFEGGLIPMYLIIGIWGGVNRIYAS---YKFFLYTLLG 175
Query: 643 SGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMW 702
S ML + + TGT + V+ ++ + L + K+ + P H W
Sbjct: 176 SLLMLVAMIFMVLNTGTTSIP----VLMAHDFPANWQTWLWLAFFASFAVKMPMWPVHTW 231
Query: 703 VPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGN 761
+PD + Q + +L KL + + R + + + ++ L+ +++ +
Sbjct: 232 LPDAHVQAPTAGSVILAGVLLKLGGYGFL-RFSLPMFPVASVQFMWVVFGLSCVAVVYTS 290
Query: 762 VSAITQYNFKRMIAYSSIAH-----MGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ A+ Q + K++IAYSS+AH MGL F+ I + ++ LF + I
Sbjct: 291 LVALVQSDMKKLIAYSSVAHMAIVTMGLFAFNANGIDGAMMVMLGHGVVSGALFLCVGII 350
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
+ L T E+D + GL P A++ ++F + G P T F +
Sbjct: 351 YDRL---------------HTREIDRYGGLAINMPRYAVLFLLFTMASIGLPGTSNFVGE 395
Query: 877 FFIFEKIFETQKIWLLLLIIMCSLIGAK 904
FF +++ W L+ ++GA
Sbjct: 396 FFSLAGVYQVST-WTALIGTTGIILGAA 422
>gi|384532629|ref|YP_005718233.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sinorhizobium meliloti BL225C]
gi|333814805|gb|AEG07473.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sinorhizobium meliloti BL225C]
Length = 491
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 162/335 (48%), Positives = 244/335 (72%), Gaps = 1/335 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGL 279
+ + W+ I Y LG+DG+S F+ LTA ++LI +L S + I +K+ E+M + L++ L
Sbjct: 62 ESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLLVMQAL 121
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD LFY+F+EA LIP+++IIG WGG R YAA KFFLYTL GS+L LI +I
Sbjct: 122 MLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIV 181
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ + Q WLF F +AFA+K+P+ P+HTWLPDAHV+APT GS
Sbjct: 182 LYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGS 241
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG LRFSL + P+AS Y+S L++ LS ++I+Y L+A+ Q D+KKL+A
Sbjct: 242 IILAGVLLKMGAYGFLRFSLSMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVA 301
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFVTLGIF L ++G+I+QM +H + + A+F+ +G +Y + TR I+N+GG
Sbjct: 302 YSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGG 361
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
++ P ++ F +F+L++ +LPGT+ F+GE +++
Sbjct: 362 LMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVL 396
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR--MSPLFELSNTALSIILF 106
K P+HTWLPD+ ++ PT A ++I A ++ G + R +S L E S +++L
Sbjct: 219 KVPMVPVHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFLRFSLSMLPEASLYYSTLMLA 277
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ A+ + GLL + Q+D+K+++AYS++S +G++T+G L + SI + H
Sbjct: 278 LSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITT 337
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G +I H + I N GGL K P+
Sbjct: 338 GALFLFVG-LIYERTHTRSIANYGGLMKAAPV 368
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLI--IV 688
AA K+F+ + S L G+ +LY + F+++ L + S L +V
Sbjct: 160 AAFKFFLYTLAGSILFLIGVIVLY-----FQGGETFDILALTGQDLPFGVQSWLFFAFLV 214
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINWQK 747
+ K+ + P H W+PD + A +++L+ K+ + + R + L + +
Sbjct: 215 AFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFL-RFSLSMLPEASLYYST 273
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
++L L+ +++ G + A+ Q + K+++AYSSI+HMG + I ++
Sbjct: 274 LMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFAL 318
>gi|327195229|ref|YP_004339011.1| NADH dehydrogenase subunit 4 [Coccomyxa subellipsoidea C-169]
gi|325070725|gb|ADY75453.1| NADH dehydrogenase subunit 4 [Coccomyxa subellipsoidea C-169]
Length = 490
Score = 336 bits (861), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 176/365 (48%), Positives = 258/365 (70%), Gaps = 5/365 (1%)
Query: 227 DYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGAFC 285
+Y + + +G+DG+SL+FI LT F+ I IL+ IK + EY AFL+L L+I AF
Sbjct: 75 EYTTLSFVVGLDGISLFFIVLTTFLIPICILVGWTTIKASVKEYCVAFLVLESLLIAAFS 134
Query: 286 ALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLY-YI 343
LD + FYIFFE+ LIP+F+IIG WG R AA +FFLYTL+GSLLML++++ +Y
Sbjct: 135 VLDLLFFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLVGSLLMLLAILLIYCQT 194
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
IL Q S T+ +WL FF +FA+K+P+ P+H WLP+AHVEAPT GSVILA
Sbjct: 195 GTTDLQILYATQFSETRELILWL--AFFASFAVKVPMLPVHIWLPEAHVEAPTAGSVILA 252
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
I+LKLG YG LRFS+P+FP AS +F+ LI TLS+++IIY SL + Q+D+KK+IAYSS+
Sbjct: 253 GILLKLGTYGFLRFSIPLFPYASIFFTPLIETLSILAIIYSSLTTLRQVDLKKIIAYSSV 312
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
AHM FVTLG+F L ++GA++ M++H L+S A+F+ +GFLY++ KTRL+ +GG
Sbjct: 313 AHMNFVTLGLFSLNPQGVEGAVLLMLAHGLVSPALFLLVGFLYDRHKTRLLRYYGGCARS 372
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLS 583
+P F++ F+ F++AN SLPGT+ F+GEF++++ A + N + + ++ ++ AAY+L L
Sbjct: 373 MPIFAIMFLFFTMANISLPGTANFVGEFLVLVGAFRSNTFVATMAASTMVLGAAYALWLC 432
Query: 584 KNIIF 588
+++
Sbjct: 433 NRLLY 437
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P+H WLP++ +E PT A ++I A ++ G + R S PLF ++ + ++
Sbjct: 226 KVPMLPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPLFPYASIFFTPLIET 284
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
+I A + L + Q D+K+IIAYS+++ + ++T+GL GV ++ ++ H
Sbjct: 285 LSILAIIYSSLTTLRQVDLKKIIAYSSVAHMNFVTLGLFSLNPQGVEG---AVLLMLAHG 341
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCI 198
LFL G + + + +R GG + MPI I
Sbjct: 342 LVSPALFLLVG-FLYDRHKTRLLRYYGGCARSMPIFAI 378
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 131/293 (44%), Gaps = 24/293 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + AA ++F+ ++ S ML I ++Y TGT
Sbjct: 137 DLLFFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLVGSLLMLLAILLIYCQTGT 196
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ I + + +L L+ + K+ + P H+W+P+ + G+ I+
Sbjct: 197 TDLQ-ILYATQFSETRELILWLAFF---ASFAVKVPMLPVHIWLPEAHVEAPTAGSVILA 252
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I I + ++ L+I ++I +++ + Q + K++I
Sbjct: 253 GILL----KLGTYGFL-RFSIPLFPYASIFFTPLIETLSILAIIYSSLTTLRQVDLKKII 307
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ + GL + +F ++G L +
Sbjct: 308 AYSSVAHMNFVTLGLFSLNPQGVEGAVLLMLAHGL--VSPALFLLVG------FLYDR-- 357
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+KT L + G + P A++ + F + P T F +F + F +
Sbjct: 358 HKTRLLRYYGGCARSMPIFAIMFLFFTMANISLPGTANFVGEFLVLVGAFRSN 410
>gi|145589223|ref|YP_001155820.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047629|gb|ABP34256.1| NADH dehydrogenase subunit L [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 685
Score = 335 bits (860), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 169/274 (61%), Positives = 195/274 (71%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF++++ A+ AN+KAFL+NR
Sbjct: 141 MSNNLLQLFFGWEAVGVVSYLLIGFYFERQSAVFANMKAFLVNRVGDFGFILGIGLLLAS 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 TGSMQYDVIFSQNTALAAQTLPGTSWNLMTVICICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+ ALS IL IG+ITA FMG LGI+QNDIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVSRMSPLFELSDVALSFILVIGSITALFMGFLGIVQNDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMT+ LGVSAY V+IFHLMTHAFFKALLFL+AGS+I+ M H QD+R MG
Sbjct: 321 VVAYSTLSQLGYMTIALGVSAYPVAIFHLMTHAFFKALLFLAAGSVILGMHHEQDMRKMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMPITC+ L+G L+L+G PFFSGFYSKD
Sbjct: 381 GLWKYMPITCLMMLLGNLALIGTPFFSGFYSKDS 414
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 100/189 (52%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 291
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I+ + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + AI
Sbjct: 292 VALS-FILVIGSITALFMGFLGIVQNDIKRVVAYSTLSQLGYMTIA---LGVSAYPVAIF 347
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F++ G + + + GG+ +P + ++ +LA P S
Sbjct: 348 HLMTHAFFKALLFLAAGSVILGMHHEQDMRKMGGLWKYMPITCLMMLLGNLALIGTPFFS 407
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 408 GFYSKDSII 416
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 149/308 (48%), Gaps = 30/308 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NNLL ++ G E + + +LI +++ +F A +K F++ +
Sbjct: 131 LFTFAMLMLVMSNNLLQLFFGWEAVGVVSYLLIGFYFERQSAVF---ANMKAFLVNRVGD 187
Query: 644 -GFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L TG+++ IF+ L + +++ + + + +G K
Sbjct: 188 FGFIL-GIGLLLASTGSMQYDVIFSQNTALAAQTLPGTSWNLMTVICICLFIGAMGKSAQ 246
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIF 755
P H+W+PD +G + I L+ + T + ++ R+ L L + IL+I +I
Sbjct: 247 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDVALSFILVIGSIT 304
Query: 756 SLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITY 815
+L +G + I Q + KR++AYS+++ +G M I++ S + IF+ F + +
Sbjct: 305 ALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TIALGVSAYPVAIFHLMTHAFFKALLF 360
Query: 816 IFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYA 875
+ A G +IL + ++ GL + P L+M++ +L G P GFY+
Sbjct: 361 L-----AAGSVIL----GMHHEQDMRKMGGLWKYMPITCLMMLLGNLALIGTPFFSGFYS 411
Query: 876 KFFIFEKI 883
K I E +
Sbjct: 412 KDSIIEAV 419
>gi|253996962|ref|YP_003049026.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Methylotenera mobilis JLW8]
gi|253983641|gb|ACT48499.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Methylotenera mobilis JLW8]
Length = 677
Score = 335 bits (860), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 173/277 (62%), Positives = 192/277 (69%), Gaps = 56/277 (20%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR+G
Sbjct: 133 MSNNFMQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLKAFLVNRVGDFGFLLGIGLVLYH 192
Query: 47 --------------AMA----------------------------KSAQFPLHTWLPDSM 64
AMA KSAQ PLH WLPDSM
Sbjct: 193 FGSLDYAAVFSVAPAMADTKINLIGNASWSLMTVTCILLFIGAMGKSAQVPLHVWLPDSM 252
Query: 65 EGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQND 124
EGPTP SALIHAATMVTAGIFM+ RMSPLFELS+TALS ++ IG+ITA FMG LG+IQND
Sbjct: 253 EGPTPISALIHAATMVTAGIFMVARMSPLFELSSTALSFVIVIGSITALFMGFLGVIQND 312
Query: 125 IKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIR 184
IKR++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+I+ M H+QDIR
Sbjct: 313 IKRVVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIMGMHHDQDIR 372
Query: 185 NMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
NMG L KYMPIT ITSLIG L+L+G P SGFYSKD
Sbjct: 373 NMGNLKKYMPITWITSLIGSLALIGTPLLSGFYSKDS 409
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 182/380 (47%), Gaps = 33/380 (8%)
Query: 206 SLVGAPFFSGFYSKDKKKIWIDYFNIYYFLG--IDGLSLWFIPLTAFITLIIILIS---L 260
++V P+ YS W+ N + +G ID LS + + F++L++ + + +
Sbjct: 55 AIVSQPYNETVYS------WLKSGNFSFEIGFLIDRLSAMMMVVVTFVSLMVHIYTIGYM 108
Query: 261 DIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAA 319
K A + S + + ++ + + M + +EA + +++IG W + YA
Sbjct: 109 HEDKGYARFFSYISLFTFSMLMLVMSNNFMQLFFGWEAVGLVSYLLIGFWYTRPTAIYAN 168
Query: 320 IKFFLYTLMGSLLMLISM-IYLYYISNKSFNIL--SWHQLSITKIEQI----WLFIT--- 369
+K FL +G L+ + + LY+ + + + ++ TKI I W +T
Sbjct: 169 LKAFLVNRVGDFGFLLGIGLVLYHFGSLDYAAVFSVAPAMADTKINLIGNASWSLMTVTC 228
Query: 370 --FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
FI K P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +S
Sbjct: 229 ILLFIGAMGKSAQVPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSS 286
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S +I + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + AI
Sbjct: 287 TALS-FVIVIGSITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIF 342
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + I N G + +P + +I SLA P S
Sbjct: 343 HLMTHAFFKALLFLGAGSVIMGMHHDQDIRNMGNLKKYMPITWITSLIGSLALIGTPLLS 402
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II A KF+ G
Sbjct: 403 GFYSKDSII-EAAKFSTVAG 421
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 150/326 (46%), Gaps = 37/326 (11%)
Query: 577 AYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYF 636
Y+ S +F ++++ NN + ++ G E + L +LI + A +K F
Sbjct: 113 GYARFFSYISLFTFSMLMLVMSNNFMQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLKAF 172
Query: 637 ILGILSSGFMLYGISILYGITGTLELQSIFNV------IKLN---NINCSVLALSLLLII 687
++ + L GI ++ G+L+ ++F+V K+N N + S++ ++ +L+
Sbjct: 173 LVNRVGDFGFLLGIGLVLYHFGSLDYAAVFSVAPAMADTKINLIGNASWSLMTVTCILLF 232
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLV 742
+G K P H+W+PD +G + I L+ + T + ++ R+ L L V
Sbjct: 233 IGAMGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSSTALSFV 292
Query: 743 INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIF 802
I +I +I +L +G + I Q + KR++AYS+++ +G M +++ S ++ IF
Sbjct: 293 I------VIGSITALFMGFLGVI-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAIF 342
Query: 803 NSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ F + + LGA VI+ + ++ ++ L + P + +I
Sbjct: 343 HLMTHAFFKALLF----LGAGSVIMGMHHD-----QDIRNMGNLKKYMPITWITSLIGSL 393
Query: 863 SLAGFPPTIGFYAKFFIFEKIFETQK 888
+L G P GFY+K + I E K
Sbjct: 394 ALIGTPLLSGFYSK----DSIIEAAK 415
>gi|337286985|ref|YP_004626458.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Thermodesulfatator indicus DSM 15286]
gi|335359813|gb|AEH45494.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Thermodesulfatator indicus DSM 15286]
Length = 514
Score = 335 bits (859), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 183/383 (47%), Positives = 267/383 (69%), Gaps = 11/383 (2%)
Query: 216 FYSKDK---------KKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKK 265
F+S DK K WI +NI YFLG+DG+S+ + L+ +T++ +LIS + + +K
Sbjct: 56 FFSFDKSFPGMQFVEKHSWIKAWNISYFLGVDGISVLLVLLSTLVTILCVLISWESVTEK 115
Query: 266 LAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLY 325
+ E+ A L+ S +IG FC+LD LFY+F+EA LIP+++IIG WGG NR YA IKFFLY
Sbjct: 116 VKEFHIALLLTSAAMIGVFCSLDLFLFYLFWEAMLIPMYLIIGIWGGPNRLYATIKFFLY 175
Query: 326 TLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHT 385
TL+GS+LML+ +I+LY + +FNIL L + Q WLF FF AFA+K+P+WP+HT
Sbjct: 176 TLVGSVLMLVGIIFLY-LKAGTFNILEIMNLGLPYKMQFWLFWAFFAAFAVKVPMWPVHT 234
Query: 386 WLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYIS 445
WLPDAH EAPT GSVILA I++K+G YG LRFSL FP A+ ++ LS I+I+Y
Sbjct: 235 WLPDAHTEAPTAGSVILAGILIKMGAYGFLRFSLSFFPVAAKEMMIPMLLLSAIAIVYGG 294
Query: 446 LIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFL 505
+I + Q D+K+LIAYSS++HMGF+TLGIF L +++GAI+QMI+H +++ A+F+ +G +
Sbjct: 295 IICLAQTDLKRLIAYSSVSHMGFITLGIFSLNGNAVEGAILQMINHGIVTGALFMCVGVV 354
Query: 506 YNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
Y++ TR I ++GG+ ++P ++ FF++F+LA+ LPGT+GFIGEF+++L
Sbjct: 355 YDRTHTRAIKDYGGLATIMPVYAAFFMVFTLASVGLPGTNGFIGEFLVLLGTFASKKWAA 414
Query: 566 VLTSTALIFSAAYSLCLSKNIIF 588
VL +T +I A Y L L + + F
Sbjct: 415 VLGTTGIIIGATYMLRLYQQVFF 437
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 52/264 (19%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAM------------- 48
S +LF +L WE + + YL+IG W P + A +K FL +G++
Sbjct: 136 SLDLFLFYLFWEAMLIPMYLIIGIW-GGPNRLYATIKFFLYTLVGSVLMLVGIIFLYLKA 194
Query: 49 ------------------------------AKSAQFPLHTWLPDS-MEGPTPASALIHAA 77
K +P+HTWLPD+ E PT A ++I A
Sbjct: 195 GTFNILEIMNLGLPYKMQFWLFWAFFAAFAVKVPMWPVHTWLPDAHTEAPT-AGSVILAG 253
Query: 78 TMVTAGIFMITRMS-PLFELSNTALSI-ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLS 135
++ G + R S F ++ + I +L + AI + G++ + Q D+KR+IAYS++S
Sbjct: 254 ILIKMGAYGFLRFSLSFFPVAAKEMMIPMLLLSAIAIVYGGIICLAQTDLKRLIAYSSVS 313
Query: 136 QLGYMTVG---LGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
+G++T+G L +A +I ++ H LF+ G ++ + H + I++ GGL
Sbjct: 314 HMGFITLGIFSLNGNAVEGAILQMINHGIVTGALFMCVG-VVYDRTHTRAIKDYGGLATI 372
Query: 193 MPITCITSLIGLLSLVGAPFFSGF 216
MP+ ++ L+ VG P +GF
Sbjct: 373 MPVYAAFFMVFTLASVGLPGTNGF 396
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 140/319 (43%), Gaps = 46/319 (14%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L YL E M + + ++I N ++ A IK+F+ ++ S ML GI LY
Sbjct: 138 DLFLFYLFWEAMLIPMYLIIGIWGGPNRLY---ATIKFFLYTLVGSVLMLVGIIFLYLKA 194
Query: 658 GTLELQSIFNVIKLNNINCS--VLALSLLLIIVGLSFKLGISPFHMWVPDVYQ-----GA 710
GT FN++++ N+ + + K+ + P H W+PD + G+
Sbjct: 195 GT------FNILEIMNLGLPYKMQFWLFWAFFAAFAVKVPMWPVHTWLPDAHTEAPTAGS 248
Query: 711 SIIITLLLSTTP------KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSA 764
I+ +L+ LS F + + + ++P+ L+L+ +++ G +
Sbjct: 249 VILAGILIKMGAYGFLRFSLSFFPVAAK---EMMIPM--------LLLSAIAIVYGGIIC 297
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFG 824
+ Q + KR+IAYSS++HMG + I S+ N+ + + +I + F
Sbjct: 298 LAQTDLKRLIAYSSVSHMGFITLGIFSLNG--------NAVEGAILQMINHGIVTGALFM 349
Query: 825 VIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
+ ++ + T T + + GL P A M+F + G P T GF +F + F
Sbjct: 350 CVGVVYDRT--HTRAIKDYGGLATIMPVYAAFFMVFTLASVGLPGTNGFIGEFLVLLGTF 407
Query: 885 ETQKIWLLLLIIMCSLIGA 903
++K W +L +IGA
Sbjct: 408 ASKK-WAAVLGTTGIIIGA 425
>gi|312796890|ref|YP_004029812.1| NADH-quinone oxidoreductase subunit L [Burkholderia rhizoxinica HKI
454]
gi|312168665|emb|CBW75668.1| NADH-quinone oxidoreductase chain L (EC 1.6.5.3) [Burkholderia
rhizoxinica HKI 454]
Length = 677
Score = 335 bits (859), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 169/275 (61%), Positives = 191/275 (69%), Gaps = 54/275 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGFWY +P AI ANLKAFL+NR+G
Sbjct: 143 MSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLKAFLVNRVGDFGFLLGIGLVLAY 202
Query: 47 --------------AMAKSAQFP--------------------------LHTWLPDSMEG 66
A+ + P LH WLPDSMEG
Sbjct: 203 VGSLNYGDVFAHRDALTSAGMLPGTHWQLITVTCICLFIGAMGKSAQFPLHVWLPDSMEG 262
Query: 67 PTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIK 126
PTP SALIHAATMVTAGIFM+TRMSPLFELS+ ALS ++ IGAITA FMG LGI+QNDIK
Sbjct: 263 PTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFVMVIGAITALFMGFLGIVQNDIK 322
Query: 127 RIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNM 186
R++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QD+RNM
Sbjct: 323 RVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNM 382
Query: 187 GGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GGL KYMPIT ITSL+G L+L+G PFFSGFYSKD
Sbjct: 383 GGLRKYMPITWITSLVGSLALIGTPFFSGFYSKDS 417
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 24/285 (8%)
Query: 296 FEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISM-IYLYYISNKSFNILSW 353
+EA + +++IG W + YA +K FL +G L+ + + L Y+ + ++ +
Sbjct: 154 WEAVGLVSYLLIGFWYTRPTAIYANLKAFLVNRVGDFGFLLGIGLVLAYVGSLNYGDVFA 213
Query: 354 HQLSITKIEQI----WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILA 403
H+ ++T + W IT FI K +P+H WLPD+ +E PT ++I A
Sbjct: 214 HRDALTSAGMLPGTHWQLITVTCICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHA 272
Query: 404 AIMLKLGCYGLLRFSLPIFP--DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
A M+ G + + R S P+F DA+ F ++ + I+ +++ + +VQ DIK+++AYS
Sbjct: 273 ATMVTAGIFMVTRMS-PLFELSDAALSF---VMVIGAITALFMGFLGIVQNDIKRVVAYS 328
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGI 520
+++ +G++T+ L + A+ +++HA + +F+ G + + + N GG+
Sbjct: 329 TLSQLGYMTVA---LGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGL 385
Query: 521 INVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
+P + ++ SLA P SGF + II AVK + G
Sbjct: 386 RKYMPITWITSLVGSLALIGTPFFSGFYSKDSII-EAVKLSHLPG 429
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 139/309 (44%), Gaps = 31/309 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F ++++ NN L ++ G E + L +LI + A +K F++ +
Sbjct: 133 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLKAFLVNRVGDFGF 192
Query: 647 LYGISILYGITGTLELQSIF-------NVIKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
L GI ++ G+L +F + L + ++ ++ + + +G K P
Sbjct: 193 LLGIGLVLAYVGSLNYGDVFAHRDALTSAGMLPGTHWQLITVTCICLFIGAMGKSAQFPL 252
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKILLILAI 754
H+W+PD +G + I L+ + T + ++ R+ L L V ++I AI
Sbjct: 253 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDAALSFV------MVIGAI 306
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F +
Sbjct: 307 TALFMGFL-GIVQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALL 362
Query: 815 YIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
+ LGA VII + ++ ++ GL + P + ++ +L G P GFY
Sbjct: 363 F----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLVGSLALIGTPFFSGFY 413
Query: 875 AKFFIFEKI 883
+K I E +
Sbjct: 414 SKDSIIEAV 422
>gi|452124081|ref|ZP_21936665.1| NADH-quinone oxidoreductase chain 12 [Bordetella holmesii F627]
gi|452127466|ref|ZP_21940047.1| NADH-quinone oxidoreductase chain 12 [Bordetella holmesii H558]
gi|451923311|gb|EMD73452.1| NADH-quinone oxidoreductase chain 12 [Bordetella holmesii F627]
gi|451926746|gb|EMD76876.1| NADH-quinone oxidoreductase chain 12 [Bordetella holmesii H558]
Length = 671
Score = 335 bits (859), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 191/274 (69%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLAGLKLPGSDWALLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELSN ALS I+ IGAI A F+G+LGIIQ DIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSNVALSFIIVIGAIGALFLGILGIIQTDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY+V+IFHLMTHAFFKALLFL AGS+II M H+Q+IRNMG
Sbjct: 319 VVAYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQNIRNMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT IT L+G L+LVG PFFSGFYSK+
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEN 412
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 8/182 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F ++ S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSNVALS-FIIVIGAIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK+++AYS+++ +G++T+ L + AI +++HA + +F+
Sbjct: 303 ALFLGILGIIQTDIKRVVAYSTLSQLGYMTVA---LGASAYSVAIFHLMTHAFFKALLFL 359
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
G + + I N GG+ +P + F++ +LA P SGF + II +A
Sbjct: 360 GAGSVIIGMHHDQNIRNMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSKENIIEAAGA 419
Query: 560 FN 561
N
Sbjct: 420 AN 421
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 149/324 (45%), Gaps = 25/324 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFAMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F +KL + ++L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYGEVFAQADKLAGLKLPGSDWALLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R L L + I++I AI +L
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARF--SPLFELSNVALSFIIVIGAIGALF 305
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G + I Q + KR++AYS+++ +G M +++ S ++ IF+ F + +
Sbjct: 306 LG-ILGIIQTDIKRVVAYSTLSQLGYM---TVALGASAYSVAIFHLMTHAFFKALLF--- 358
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFF 878
LGA VII + ++ + GL + P + ++ +L G P GFY+K
Sbjct: 359 -LGAGSVIIGMHHDQNIRNMG-----GLRKYMPITWITFLLGTLALVGTPFFSGFYSKEN 412
Query: 879 IFEKIFETQKIWLLLLIIMCSLIG 902
I E +W +LIG
Sbjct: 413 IIEAA-GAANVWGASFAYYATLIG 435
>gi|238023178|ref|ZP_04603604.1| hypothetical protein GCWU000324_03104 [Kingella oralis ATCC 51147]
gi|237865561|gb|EEP66701.1| hypothetical protein GCWU000324_03104 [Kingella oralis ATCC 51147]
Length = 669
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 169/273 (61%), Positives = 195/273 (71%), Gaps = 52/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ + AI ANLKAFL+NR+G
Sbjct: 136 MSNNFIQLFFGWEAVGLVSYLLIGFYFKRESAIFANLKAFLVNRVGDFGFLLGIGLVLAY 195
Query: 47 --------------------------------------AMAKSAQFPLHTWLPDSMEGPT 68
AM KSAQFPLH WLPDSMEGPT
Sbjct: 196 FGGSLRYQDVFAYLPNVAGMQFLGTDLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPT 255
Query: 69 PASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRI 128
P SALIHAATMVTAG+FM++RMSP++E+S TALS+I+ IGAITA FMGLLG IQNDIKR+
Sbjct: 256 PISALIHAATMVTAGLFMVSRMSPIYEMSTTALSVIMIIGAITALFMGLLGTIQNDIKRV 315
Query: 129 IAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
IAYSTLSQLGYMTV LGVSAY+V++FH+MTHAFFKALLFL+AGS+II M H+QD+RNMGG
Sbjct: 316 IAYSTLSQLGYMTVALGVSAYSVAMFHVMTHAFFKALLFLAAGSVIIGMHHDQDMRNMGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
L KYMPIT +T L+G LSL+G P FSGFYSKD
Sbjct: 376 LRKYMPITWLTMLLGNLSLIGTPLFSGFYSKDS 408
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 162/349 (46%), Gaps = 44/349 (12%)
Query: 552 MIILSAVKFN---FCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGL 608
M+++++V + IG + A+ Y S +F +++I NN + ++ G
Sbjct: 92 MVVVTSVSLMVHIYTIGYMHDEAV----GYQRFFSYISLFTFSMLMLIMSNNFIQLFFGW 147
Query: 609 ELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSSGFMLYGIS-ILYGITGTLELQS 664
E + L +LI +++ IF A +K F++ + L GI +L G+L Q
Sbjct: 148 EAVGLVSYLLIGFYFKRESAIF---ANLKAFLVNRVGDFGFLLGIGLVLAYFGGSLRYQD 204
Query: 665 IF----NVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLST 720
+F NV + + ++ ++ LL+ VG K P H+W+PD +G + I L+ +
Sbjct: 205 VFAYLPNVAGMQFLGTDLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAA 264
Query: 721 T-PKLSLFVI-----IYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
T LF++ IY + L I++I AI +L +G + I Q + KR+I
Sbjct: 265 TMVTAGLFMVSRMSPIYEMSTTAL-------SVIMIIGAITALFMGLLGTI-QNDIKRVI 316
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYS+++ +G M +++ S ++ +F+ F + + L A VII + ++
Sbjct: 317 AYSTLSQLGYM---TVALGVSAYSVAMFHVMTHAFFKALLF----LAAGSVIIGMHHD-- 367
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKI 883
++ GL + P L M++ SL G P GFY+K I E +
Sbjct: 368 ---QDMRNMGGLRKYMPITWLTMLLGNLSLIGTPLFSGFYSKDSIIEAV 413
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + R S PI+ ++ S +I+ + I+
Sbjct: 242 PLHVWLPDS-MEGPTPISALIHAATMVTAGLFMVSRMS-PIYEMSTTALS-VIMIIGAIT 298
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ L+ +Q DIK++IAYS+++ +G++T+ + ++ S+ A+ +++HA + +F+
Sbjct: 299 ALFMGLLGTIQNDIKRVIAYSTLSQLGYMTVAL-GVSAYSV--AMFHVMTHAFFKALLFL 355
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT---SGFIGEFMIILS 556
+ G + + + N GG+ +P + ++ L N SL GT SGF + II
Sbjct: 356 AAGSVIIGMHHDQDMRNMGGLRKYMP---ITWLTMLLGNLSLIGTPLFSGFYSKDSII-E 411
Query: 557 AVKFNFCIG 565
AVK + G
Sbjct: 412 AVKMSHLAG 420
>gi|149909807|ref|ZP_01898458.1| NuoM2 NADH-Ubiquinone/plastoquinone (complex I) oxidoreductase
[Moritella sp. PE36]
gi|149807139|gb|EDM67095.1| NuoM2 NADH-Ubiquinone/plastoquinone (complex I) oxidoreductase
[Moritella sp. PE36]
Length = 500
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/368 (44%), Positives = 250/368 (67%), Gaps = 1/368 (0%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGL 279
+ K W+ I Y LG+DG+S+ F+ LT+ + I +L S I K++ E+M L + L
Sbjct: 73 ESKPWVPSLGITYKLGVDGVSVLFLFLTSLLGWICVLASWTAIAKRIKEFMICLLAIQSL 132
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIY 339
++G FCALD +LFY+F+EA L+P++++IG WGG +R YAA KFFLYTL GSL+ L+ ++
Sbjct: 133 MLGVFCALDLLLFYVFWEAMLVPMYLMIGIWGGEDRIYAAFKFFLYTLAGSLIFLVGILV 192
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
LY+ ++F+IL+ +S Q +FI F IAFA+K+P+ P HTWLPDAHV+APT GS
Sbjct: 193 LYFAGGRTFDILTLMDVSYDFELQRGVFIAFLIAFAVKVPMVPFHTWLPDAHVQAPTAGS 252
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
+ILA ++LK+G YG +RFSLP+ PDAS+YF+ L+ LS ++I+Y +A+ Q DIKKLIA
Sbjct: 253 IILAGVLLKMGAYGFIRFSLPMLPDASHYFAPLMQGLSAVAIVYGGFLALAQQDIKKLIA 312
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGF+TLG+F T GA+IQM +H + + A+F+ IG +Y + +R I +GG
Sbjct: 313 YSSISHMGFITLGLFTFTINGTTGAVIQMFNHGITTGALFLFIGLVYERTHSRDIPAYGG 372
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYS 579
++ +P + +FF +F L++ ++PGT+GFIGE +++ N + AAY
Sbjct: 373 LLKAVPFYGIFFALFLLSSMAVPGTNGFIGEILVLSGTFGVNNWAATAGVLGALLGAAYL 432
Query: 580 LCLSKNII 587
L + + ++
Sbjct: 433 LGIYRQML 440
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P HTWLPD+ ++ PT A ++I A ++ G + R S P+ + S+ ++
Sbjct: 230 KVPMVPFHTWLPDAHVQAPT-AGSIILAGVLLKMGAYGFIRFSLPMLPDASHYFAPLMQG 288
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ A+ + G L + Q DIK++IAYS++S +G++T+GL ++ T ++ + H
Sbjct: 289 LSAVAIVYGGFLALAQQDIKKLIAYSSISHMGFITLGLFTFTINGTTGAVIQMFNHGITT 348
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G ++ H++DI GGL K +P I + LLS + P +GF
Sbjct: 349 GALFLFIG-LVYERTHSRDIPAYGGLLKAVPFYGIFFALFLLSSMAVPGTNGF 400
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 137/314 (43%), Gaps = 33/314 (10%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+LL Y+ E M + + ++I ++ I+ AA K+F+ + S L GI +LY
Sbjct: 141 DLLLFYVFWEAMLVPMYLMIGIWGGEDRIY---AAFKFFLYTLAGSLIFLVGILVLYFAG 197
Query: 658 G-TLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITL 716
G T ++ ++ +V + V + ++ + K+ + PFH W+PD + A ++
Sbjct: 198 GRTFDILTLMDVSYDFELQRGVF----IAFLIAFAVKVPMVPFHTWLPDAHVQAPTAGSI 253
Query: 717 LLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKILLILAIFSLIIGNVSAITQYNFKR 772
+L+ L + I+ LP++ + + ++ L+ +++ G A+ Q + K+
Sbjct: 254 ILAGV----LLKMGAYGFIRFSLPMLPDASHYFAPLMQGLSAVAIVYGGFLALAQQDIKK 309
Query: 773 MIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNN 832
+IAYSSI+HMG + + + + + + G+ G + L
Sbjct: 310 LIAYSSISHMGFITLGLFTFTINGTTGAVIQMFNHGI------------TTGALFLFIGL 357
Query: 833 TCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
+T DI + GL + P+ + +F+ S P T GF + + F W
Sbjct: 358 VYERTHSRDIPAYGGLLKAVPFYGIFFALFLLSSMAVPGTNGFIGEILVLSGTFGVNN-W 416
Query: 891 LLLLIIMCSLIGAK 904
++ +L+GA
Sbjct: 417 AATAGVLGALLGAA 430
>gi|456063091|ref|YP_007502061.1| Proton-translocating NADH-quinone oxidoreductase, chain L [beta
proteobacterium CB]
gi|455440388|gb|AGG33326.1| Proton-translocating NADH-quinone oxidoreductase, chain L [beta
proteobacterium CB]
Length = 686
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 169/274 (61%), Positives = 194/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNNL QLF GWE VG+ SYLLIGF++++ A+ AN+KAFL+NR
Sbjct: 141 MSNNLLQLFFGWEAVGVVSYLLIGFYFERQSAVFANMKAFLVNRVGDFGFILGIGLLLAS 200
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 201 TGSMNYDVIFAQNTALAAQTLPGTSWNLVTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 260
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM++RMSPLFELS+ ALS IL IG+ITA FMG LGI+Q DIKR
Sbjct: 261 TPISALIHAATMVTAGIFMVSRMSPLFELSDAALSFILVIGSITALFMGFLGIVQTDIKR 320
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V+IFHLMTHAFFKALLFL+AGS+I+ M H QD+R MG
Sbjct: 321 VVAYSTLSQLGYMTVALGVSAYPVAIFHLMTHAFFKALLFLAAGSVILGMHHEQDMRKMG 380
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL+KYMPITC+ L+G L+L+G PFFSGFYSKD
Sbjct: 381 GLWKYMPITCLMMLLGNLALIGTPFFSGFYSKDS 414
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 12/191 (6%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFP--D 424
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F D
Sbjct: 234 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLFELSD 291
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
A+ F I+ + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A
Sbjct: 292 AALSF---ILVIGSITALFMGFLGIVQTDIKRVVAYSTLSQLGYMTVA---LGVSAYPVA 345
Query: 485 IIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
I +++HA + +F++ G + + + GG+ +P + ++ +LA P
Sbjct: 346 IFHLMTHAFFKALLFLAAGSVILGMHHEQDMRKMGGLWKYMPITCLMMLLGNLALIGTPF 405
Query: 544 TSGFIGEFMII 554
SGF + II
Sbjct: 406 FSGFYSKDSII 416
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 143/307 (46%), Gaps = 28/307 (9%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NNLL ++ G E + + +LI +++ +F++ +K F++ +
Sbjct: 131 LFTFAMLMLVMSNNLLQLFFGWEAVGVVSYLLIGFYFERQSAVFAN---MKAFLVNRVGD 187
Query: 644 -GFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
GF+L GI +L TG++ IF L + +++ ++ + + +G K
Sbjct: 188 FGFIL-GIGLLLASTGSMNYDVIFAQNTALAAQTLPGTSWNLVTVACICLFIGAMGKSAQ 246
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ L L +L++ +
Sbjct: 247 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM--SPLFELSDAALSFILVIGSIT 304
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
+ I Q + KR++AYS+++ +G M +++ S + IF+ F + ++
Sbjct: 305 ALFMGFLGIVQTDIKRVVAYSTLSQLGYM---TVALGVSAYPVAIFHLMTHAFFKALLFL 361
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
A G +IL + ++ GL + P L+M++ +L G P GFY+K
Sbjct: 362 -----AAGSVIL----GMHHEQDMRKMGGLWKYMPITCLMMLLGNLALIGTPFFSGFYSK 412
Query: 877 FFIFEKI 883
I E +
Sbjct: 413 DSIIEAV 419
>gi|386800408|ref|YP_006280872.1| nad4 gene product (mitochondrion) [Pyropia yezoensis]
gi|384034967|gb|AFH57678.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pyropia yezoensis]
Length = 488
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/366 (46%), Positives = 255/366 (69%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDI-KKKLAEYMSAFLILSGLIIGA 283
W +NIYY +G+DG+SL+FI LT ++ + LIS ++ ++ EY+ FL+L ++I
Sbjct: 69 WFPSYNIYYTIGVDGISLFFIILTTWLITVCTLISWNMPDSQIKEYLICFLLLEAILIQV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD + FYIFFE+ LIP+F+IIG WG R AA +FF+YTL GSLLML++++ +Y+
Sbjct: 129 FCVLDVLFFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLAGSLLMLLAILTIYF 188
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + +I ++ QI L++ FF + A+KIP+ P H WLP+AH EAPT GSVIL
Sbjct: 189 -QHGTTDIQVLWNINFDVRTQILLWLAFFASLAVKIPMIPFHIWLPEAHAEAPTAGSVIL 247
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A ++LK+G YG LRFSLP+FP+AS YF+ LI LS+I+ IY SL + Q+D+KK+IAYSS
Sbjct: 248 AGVLLKMGGYGFLRFSLPLFPEASLYFAPLIYLLSIIAAIYASLTTIRQVDLKKIIAYSS 307
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
++HMGFVTLG+F I+G+II M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 308 VSHMGFVTLGLFSFNSQGIEGSIILMLSHGLVSSALFLCVGILYDRHKTRLLKYYGGLVQ 367
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
V+P FS+ + F+ +N PGTS F+GE ++++ +F+ L++ ++I A YS+ L
Sbjct: 368 VMPIFSILLLFFTFSNIGFPGTSSFVGELLVLMGVFQFSPISTFLSAFSMILGAGYSIWL 427
Query: 583 SKNIIF 588
+ F
Sbjct: 428 FNRVCF 433
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIIL 105
K P H WLP++ E PT A ++I A ++ G + R S PLF E S +I
Sbjct: 221 VKIPMIPFHIWLPEAHAEAPT-AGSVILAGVLLKMGGYGFLRFSLPLFPEASLYFAPLIY 279
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTH 159
+ I A + L I Q D+K+IIAYS++S +G++T+GL G+ SI +++H
Sbjct: 280 LLSIIAAIYASLTTIRQVDLKKIIAYSSVSHMGFVTLGLFSFNSQGIEG---SIILMLSH 336
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G I+ + + ++ GGL + MPI I L S +G P S F
Sbjct: 337 GLVSSALFLCVG-ILYDRHKTRLLKYYGGLVQVMPIFSILLLFFTFSNIGFPGTSSF 392
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 127/268 (47%), Gaps = 30/268 (11%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA ++FI + S ML I +Y GT ++Q ++N+ N + L L
Sbjct: 163 RAAYQFFIYTLAGSLLMLLAILTIYFQHGTTDIQVLWNI----NFDVRTQILLWLAFFAS 218
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLV--- 742
L+ K+ + PFH+W+P+ + A +++L+ ++ ++ ++ LPL
Sbjct: 219 LAVKIPMIPFHIWLPEAHAEAPTAGSVILAG--------VLLKMGGYGFLRFSLPLFPEA 270
Query: 743 -INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLII 801
+ + ++ +L+I + I +++ I Q + K++IAYSS++HMG + + S + I
Sbjct: 271 SLYFAPLIYLLSIIAAIYASLTTIRQVDLKKIIAYSSVSHMGFVTLGLFSFNSQGIEGSI 330
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
GL + + +F +G IL +KT L + GL Q P +++++ F
Sbjct: 331 ILMLSHGL--VSSALFLCVG-----ILYDR---HKTRLLKYYGGLVQVMPIFSILLLFFT 380
Query: 862 FSLAGFPPTIGFYAKFFIFEKIFETQKI 889
FS GFP T F + + +F+ I
Sbjct: 381 FSNIGFPGTSSFVGELLVLMGVFQFSPI 408
>gi|413958281|ref|ZP_11397520.1| NADH:ubiquinone oxidoreductase subunit L [Burkholderia sp. SJ98]
gi|413940861|gb|EKS72821.1| NADH:ubiquinone oxidoreductase subunit L [Burkholderia sp. SJ98]
Length = 689
Score = 334 bits (857), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 191/274 (69%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAF++NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFIVNRVGDFGFLLGIGLLLAF 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 AGSLNYGDVFAQGDKLATMTFPGTQWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFE S+ ALS + IGAITA FMG LG++QNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVTRMSPLFEHSDAALSFVTVIGAITALFMGFLGVVQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHL THAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYPVAVFHLGTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 377 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 410
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 230 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFEHSD 287
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 288 AALS-FVTVIGAITALFMGFLGVVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 343
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+ +HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 344 HLGTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 403
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK++ G
Sbjct: 404 GFYSKDSII-EAVKYSHLAG 422
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 139/311 (44%), Gaps = 36/311 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K FI+ +
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFIVNRVG 182
Query: 643 SGFMLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G+L +F + +L ++ + + +G K
Sbjct: 183 DFGFLLGIGLLLAFAGSLNYGDVFAQGDKLATMTFPGTQWGLLTVACICLFIGAMGKSAQ 242
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL----LIL 752
P H+W+PD +G + I L+ + T + ++ R + PL + L +I
Sbjct: 243 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTR-----MSPLFEHSDAALSFVTVIG 297
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
AI +L +G + + Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 298 AITALFMGFL-GVVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLGTHAFFKA 353
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ + LGA VII + ++ ++ GL + P + +I +L G P G
Sbjct: 354 LLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSG 404
Query: 873 FYAKFFIFEKI 883
FY+K I E +
Sbjct: 405 FYSKDSIIEAV 415
>gi|14272169|emb|CAC39484.1| NADH dehydrogenase subunit 4 [Bazzania trilobata]
Length = 418
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/367 (47%), Positives = 255/367 (69%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ LT F+T I IL+ L +K EYM +F I I
Sbjct: 4 WLPYPNINFYIGIDGISLFFVILTTFLTPICILVGLHSVKSYKKEYMISFFICESFPIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
+LD ++FY+F E+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 64 SRSLDLLIFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
A I+ KLG YG LRFS+P+FP+A+ YF+ I S+I+IIY SL + QID+KK+IAYS
Sbjct: 182 SAGILSKLGTYGFLRFSIPMFPEATLYFTPFIYAPSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
+AHM FVT+G+F L I+G+I+ M+SH +SSA F+ G LY++ KTR++ +GG++
Sbjct: 242 PVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSAPFLCAGALYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P FS F+ F+ AN SLPGTS FIGEF+I++ A++ N + L + +I AAYSL
Sbjct: 302 STMPIFSTIFLFFTPANMSLPGTSSFIGEFLILVGAIQRNSLVAALAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P+H WLP++ +E PT A ++I A + G + R S P+F + + ++
Sbjct: 157 KVPMVPVHIWLPEAHVEAPT-AGSVISAGILSKLGTYGFLRFSIPMFPEATLYFTPFIYA 215
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
++ A + L I Q D+K+IIAYS ++ + ++T+G L + SI +++H
Sbjct: 216 PSVIAIIYTSLTTIRQIDLKKIIAYSPVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVS 275
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ FL AG++ K + ++ GGL MPI
Sbjct: 276 SAPFLCAGALYDRHK-TRIVKYYGGLVSTMPI 306
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 68 DLLIFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 127
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ ++ + L + S K+ + P H+W+P+ + A S+I
Sbjct: 128 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVISA 183
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
+LS KL + + R I + + + ++ ++I +++ I Q + K++IA
Sbjct: 184 GILS---KLGTYGFL-RFSIPMFPEATLYFTPFIYAPSVIAIIYTSLTTIRQIDLKKIIA 239
Query: 776 YSSIAHMGLMLFSIISI 792
YS +AHM + + S+
Sbjct: 240 YSPVAHMNFVTIGMFSL 256
>gi|162134244|gb|ABX82563.1| NADH dehydrogenase subunit 4 [Trebouxia aggregata]
Length = 526
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/373 (45%), Positives = 261/373 (69%), Gaps = 3/373 (0%)
Query: 227 DYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFC 285
+Y ++ + +GIDG+SL+FI L F+ + IL+ + + EY AFL+L L+I F
Sbjct: 107 EYSSLSFIIGIDGISLFFIILCTFLIPVCILVGWKSVSVYVKEYCIAFLVLESLMICFFS 166
Query: 286 ALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYYIS 344
LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL GS+LML++++ +Y+ +
Sbjct: 167 VLDLLLFYVFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLAILLIYFQT 226
Query: 345 NKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAA 404
+ ++ + + ++ +I L++ FF +FA+K+P+ P+H WLP+AHVEAPT GSVILA
Sbjct: 227 GTT-DLQILYTTAFSETREILLWLCFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAG 285
Query: 405 IMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
IMLKLG YG LR SLP+FP A YF+ LI T+S+++IIY SL + Q+D+KK+IAYSS+A
Sbjct: 286 IMLKLGTYGFLRLSLPLFPYACIYFTPLIYTMSVVAIIYTSLTTLRQVDLKKIIAYSSVA 345
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVI 524
HM F+T+G+F L ++G+++ M+SH ++S A+F+ +G LY++ KTRL+ + G +
Sbjct: 346 HMNFITIGLFSLNTQGVEGSVMLMLSHGIVSPALFLLVGVLYDRHKTRLLRYYAGCGRTM 405
Query: 525 PHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSK 584
P F++ F+ F++AN SLPGTS FIGEF+++ + N + VL +T I AAY+L L
Sbjct: 406 PLFALMFLFFTMANLSLPGTSSFIGEFLVLTGLFQTNSFVAVLATTGTILGAAYALWLCN 465
Query: 585 NIIFVLGQMIMIS 597
+I+ +G++ IS
Sbjct: 466 RVIYGVGKVYYIS 478
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 14/155 (9%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P+H WLP++ +E PT A ++I A M+ G + R+S PLF + + +++
Sbjct: 258 KVPMVPVHIWLPEAHVEAPT-AGSVILAGIMLKLGTYGFLRLSLPLFPYACIYFTPLIYT 316
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
++ A + L + Q D+K+IIAYS+++ + ++T+GL GV S+ +++H
Sbjct: 317 MSVVAIIYTSLTTLRQVDLKKIIAYSSVAHMNFITIGLFSLNTQGVEG---SVMLMLSHG 373
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G ++ + + +R G + MP+
Sbjct: 374 IVSPALFLLVG-VLYDRHKTRLLRYYAGCGRTMPL 407
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 154/345 (44%), Gaps = 25/345 (7%)
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMI---SGNNLLSI 604
I F IIL CI V + ++ Y I F++ + +MI S +LL
Sbjct: 120 ISLFFIILCTFLIPVCILVGWKSVSVYVKEYC------IAFLVLESLMICFFSVLDLLLF 173
Query: 605 YLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQS 664
Y+ E + + + ++I + AA ++F+ + S ML I ++Y TGT +LQ
Sbjct: 174 YVFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLAILLIYFQTGTTDLQI 233
Query: 665 IFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS-TTPK 723
++ + + L L + K+ + P H+W+P+ + A +++L+ K
Sbjct: 234 LYT----TAFSETREILLWLCFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIMLK 289
Query: 724 LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG 783
L + + RL + I + ++ +++ ++I +++ + Q + K++IAYSS+AHM
Sbjct: 290 LGTYGFL-RLSLPLFPYACIYFTPLIYTMSVVAIIYTSLTTLRQVDLKKIIAYSSVAHMN 348
Query: 784 LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
+ + S+ T + + ++++ F ++ +L + +KT L +
Sbjct: 349 FITIGLFSLNT--------QGVEGSVMLMLSHGIVSPALFLLVGVLYDR--HKTRLLRYY 398
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
G + P AL+ + F + P T F +F + +F+T
Sbjct: 399 AGCGRTMPLFALMFLFFTMANLSLPGTSSFIGEFLVLTGLFQTNS 443
>gi|377821134|ref|YP_004977505.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Burkholderia sp. YI23]
gi|357935969|gb|AET89528.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Burkholderia sp. YI23]
Length = 691
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 191/274 (69%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI AN+KAF++NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANMKAFIVNRVGDFGFLLGIGLLLAF 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 SGSLNYGDVFAQGDKLAAMTFPGTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFE S+ ALS + IGAITA FMG LG++QNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVTRMSPLFEHSDAALSFVTVIGAITALFMGFLGVVQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHL THAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYPVAVFHLGTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 377 GLRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 410
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 230 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFEHSD 287
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S + + I+ +++ + +VQ DIK+++AYS+++ +G++T+ L + A+
Sbjct: 288 AALS-FVTVIGAITALFMGFLGVVQNDIKRVVAYSTLSQLGYMTVA---LGVSAYPVAVF 343
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+ +HA + +F+ G + + + N GG+ +P + +I SLA P S
Sbjct: 344 HLGTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIGSLALIGTPFFS 403
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AVK++ G
Sbjct: 404 GFYSKDSII-EAVKYSHLAG 422
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 141/311 (45%), Gaps = 36/311 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K FI+ +
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANMKAFIVNRVG 182
Query: 643 SGFMLYGISILYGITGTLELQSIF------NVIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L +G+L +F + + +L ++ + + +G K
Sbjct: 183 DFGFLLGIGLLLAFSGSLNYGDVFAQGDKLAAMTFPGTDWGLLTVACICLFIGAMGKSAQ 242
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL----LIL 752
P H+W+PD +G + I L+ + T + ++ R + PL + L +I
Sbjct: 243 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTR-----MSPLFEHSDAALSFVTVIG 297
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
AI +L +G + + Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 298 AITALFMGFL-GVVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLGTHAFFKA 353
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ + LGA VII + ++ ++ GL + P + +I +L G P G
Sbjct: 354 LLF----LGAGSVIIGMHHD-----QDMRNMGGLRKYMPITWITSLIGSLALIGTPFFSG 404
Query: 873 FYAKFFIFEKI 883
FY+K I E +
Sbjct: 405 FYSKDSIIEAV 415
>gi|348617937|ref|ZP_08884471.1| Proton-translocating NADH-quinone oxidoreductase,subunit L (NADH
dehydrogenase I subunit L) (NDH-1 subunit L) [Candidatus
Glomeribacter gigasporarum BEG34]
gi|347816881|emb|CCD29127.1| Proton-translocating NADH-quinone oxidoreductase,subunit L (NADH
dehydrogenase I subunit L) (NDH-1 subunit L) [Candidatus
Glomeribacter gigasporarum BEG34]
Length = 662
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/274 (60%), Positives = 192/274 (70%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGFWY K AI AN+KAF++NR
Sbjct: 140 MSNNFLQLFFGWEAVGLISYLLIGFWYTKESAIKANMKAFIVNRVGDFGFILGIGLLFAF 199
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 200 AGSLHYGEVFKMRTELAGFTLPGSNWGLLTVTCLCLFIGAMGKSAQFPLHVWLPDSMEGP 259
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+TRMSPLFELS + LS ++ +GA TA FMG+LG++QNDIKR
Sbjct: 260 TPISALIHAATMVTAGIFMVTRMSPLFELSESTLSFMMAVGATTALFMGILGLVQNDIKR 319
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LG SAY++++FHL+THAFFKALLFL+AGS+II M H QD+RNMG
Sbjct: 320 VVAYSTLSQLGYMTVALGASAYSMAVFHLVTHAFFKALLFLAAGSVIIGMHHEQDMRNMG 379
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL + MP+T T+LIG L+L+GAPFFSGFYSKD
Sbjct: 380 GLRRAMPVTWATALIGALALIGAPFFSGFYSKDA 413
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 138/308 (44%), Gaps = 22/308 (7%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN L ++ G E + L +LI + +A +K FI+ + GF
Sbjct: 130 LFTFAMLMLVMSNNFLQLFFGWEAVGLISYLLIGFWYTKESAIKANMKAFIVNRVGDFGF 189
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ G+L +F + L N +L ++ L + +G K P
Sbjct: 190 IL-GIGLLFAFAGSLHYGEVFKMRTELAGFTLPGSNWGLLTVTCLCLFIGAMGKSAQFPL 248
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLII 759
H+W+PD +G + I L+ + T + ++ R+ L L + ++ + + +
Sbjct: 249 HVWLPDSMEGPTPISALIHAATMVTAGIFMVTRM--SPLFELSESTLSFMMAVGATTALF 306
Query: 760 GNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAI 819
+ + Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 307 MGILGLVQNDIKRVVAYSTLSQLGYM---TVALGASAYSMAVFHLVTHAFFKALLF---- 359
Query: 820 LGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
L A VII + + ++ GL + P +I +L G P GFY+K I
Sbjct: 360 LAAGSVIIGMHHE-----QDMRNMGGLRRAMPVTWATALIGALALIGAPFFSGFYSKDAI 414
Query: 880 FEKIFETQ 887
E + +
Sbjct: 415 IEAVRRSH 422
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 116/225 (51%), Gaps = 14/225 (6%)
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYF 429
FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 236 FIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSESTL 293
Query: 430 SNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMI 489
S ++ + + +++ ++ +VQ DIK+++AYS+++ +G++T+ L + A+ ++
Sbjct: 294 S-FMMAVGATTALFMGILGLVQNDIKRVVAYSTLSQLGYMTVA---LGASAYSMAVFHLV 349
Query: 490 SHALISSAMFISIGF----LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+HA + +F++ G ++++ R N GG+ +P +I +LA P S
Sbjct: 350 THAFFKALLFLAAGSVIIGMHHEQDMR---NMGGLRRAMPVTWATALIGALALIGAPFFS 406
Query: 546 GFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVL 590
GF + II + + + + ALI S + + +IF++
Sbjct: 407 GFYSKDAIIEAVRRSHLPGAGFAAFALIASVFVTALYTFRMIFLV 451
>gi|291613549|ref|YP_003523706.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Sideroxydans lithotrophicus ES-1]
gi|291583661|gb|ADE11319.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Sideroxydans lithotrophicus ES-1]
Length = 672
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/276 (62%), Positives = 190/276 (68%), Gaps = 55/276 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAI--------------------------- 33
M+NN QLF GWE VG+ SYLLIGFWY +P AI
Sbjct: 133 MANNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLKAFLVNRVGDFGFLLGIGLVLMV 192
Query: 34 --TANLKAFLINR--------------------------IGAMAKSAQFPLHTWLPDSME 65
T + +A N IGAM KSAQFPLH WLPDSME
Sbjct: 193 FGTLDYQAVFANAHNYVNDMAPIPGISVGLLTSICILLFIGAMGKSAQFPLHVWLPDSME 252
Query: 66 GPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDI 125
GPTP SALIHAATMVTAGIFM+ RMSPLFELS+TALS ++ IGAITA FMG LG+IQNDI
Sbjct: 253 GPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVMVIGAITALFMGFLGVIQNDI 312
Query: 126 KRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRN 185
KR++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIRN
Sbjct: 313 KRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIAMHHDQDIRN 372
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
MGGL KYMPIT ITSLIG L+LVG PFFSGFYSKD
Sbjct: 373 MGGLRKYMPITWITSLIGSLALVGTPFFSGFYSKDS 408
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 228 ILLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSD 285
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 286 TALS-FVMVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 341
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + I N GG+ +P + +I SLA P S
Sbjct: 342 HLMTHAFFKALLFLGAGSVIIAMHHDQDIRNMGGLRKYMPITWITSLIGSLALVGTPFFS 401
Query: 546 GFIGEFMIILSAVKFNFCIG 565
GF + II AV+++ G
Sbjct: 402 GFYSKDSII-EAVEYSHLAG 420
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 146/320 (45%), Gaps = 32/320 (10%)
Query: 577 AYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYF 636
Y S +F ++++ NN L ++ G E + L +LI + A +K F
Sbjct: 113 GYQRFFSYISLFTFSMLMLVMANNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLKAF 172
Query: 637 ILGILSSGFMLYGISILYGITGTLELQSIF--------NVIKLNNINCSVLALSLLLIIV 688
++ + L GI ++ + GTL+ Q++F ++ + I+ +L +L+ +
Sbjct: 173 LVNRVGDFGFLLGIGLVLMVFGTLDYQAVFANAHNYVNDMAPIPGISVGLLTSICILLFI 232
Query: 689 GLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVI 743
G K P H+W+PD +G + I L+ + T + ++ R+ L L V
Sbjct: 233 GAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFV- 291
Query: 744 NWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
++I AI +L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+
Sbjct: 292 -----MVIGAITALFMGFLGVI-QNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFH 342
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
F + + LGA VII + ++ ++ GL + P + +I +
Sbjct: 343 LMTHAFFKALLF----LGAGSVIIAMHHD-----QDIRNMGGLRKYMPITWITSLIGSLA 393
Query: 864 LAGFPPTIGFYAKFFIFEKI 883
L G P GFY+K I E +
Sbjct: 394 LVGTPFFSGFYSKDSIIEAV 413
>gi|323398660|ref|YP_004222735.1| NADH dehydrogenase subunit 4 [Glaucocystis nostochinearum]
gi|321401353|gb|ADW83107.1| NADH dehydrogenase subunit 4 [Glaucocystis nostochinearum]
Length = 488
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 174/366 (47%), Positives = 259/366 (70%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
WI N YY +GIDG+SL+FI LT F+ I +L S D IKK E++ FLIL ++I +
Sbjct: 68 WIPSENFYYTVGIDGISLFFIILTTFLIPICVLASWDSIKKNFKEFVICFLILESILILS 127
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
F LD +LFYIFFE+ LIP+F+IIG WG R AA FFLYTL+GSL ML+ ++ +Y+
Sbjct: 128 FSVLDILLFYIFFESILIPMFLIIGIWGSRERKIRAAYYFFLYTLVGSLFMLLGILLIYF 187
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + ++ + + ++ Q+ L++ FF +F++K+P+ P H WLP+AHVE+PT GS++L
Sbjct: 188 ETGTT-DLQTLSFIKFSEKRQLLLWLAFFASFSVKVPMIPFHIWLPEAHVESPTAGSLVL 246
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I+LKLG YG LRFSL +FP A+ YF+ L+ T+ +I I+Y SL + QID+KK+IAYSS
Sbjct: 247 AGILLKLGTYGFLRFSLNLFPWATIYFTPLVFTMGVIGIVYGSLTTLRQIDLKKIIAYSS 306
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHM FV LGIF L I+G+I+ M+SH ++S A+F++IG LY++ K+R+++ + G++
Sbjct: 307 VAHMNFVVLGIFALNLQGIEGSILLMLSHGIVSPALFLAIGVLYDRYKSRILNYYSGLVQ 366
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
V+P F++FF F+LAN SLP TS F+GEF+++L A ++N + + +I A+YSL L
Sbjct: 367 VMPLFAIFFGFFTLANISLPTTSSFVGEFLVLLGAFRYNTIAAFIATLGIILGASYSLWL 426
Query: 583 SKNIIF 588
+IF
Sbjct: 427 YNRVIF 432
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA +F+ ++ S FML GI ++Y TGT +LQ++ + IK + +L L+
Sbjct: 162 RAAYYFFLYTLVGSLFMLLGILLIYFETGTTDLQTL-SFIKFSEKRQLLLWLAFF---AS 217
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
S K+ + PFH+W+P+ + + +L+L+ KL + + R + I + +
Sbjct: 218 FSVKVPMIPFHIWLPEAHVESPTAGSLVLAGILLKLGTYGFL-RFSLNLFPWATIYFTPL 276
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIK 793
+ + + ++ G+++ + Q + K++IAYSS+AHM ++ I ++
Sbjct: 277 VFTMGVIGIVYGSLTTLRQIDLKKIIAYSSVAHMNFVVLGIFALN 321
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P H WLP++ +E PT A +L+ A ++ G + R S LF + + ++F
Sbjct: 220 VKVPMIPFHIWLPEAHVESPT-AGSLVLAGILLKLGTYGFLRFSLNLFPWATIYFTPLVF 278
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+G I + L + Q D+K+IIAYS+++ + ++ +G L + SI +++H
Sbjct: 279 TMGVIGIVYGSLTTLRQIDLKKIIAYSSVAHMNFVVLGIFALNLQGIEGSILLMLSHGIV 338
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCI 198
LFL+ G ++ + ++ + GL + MP+ I
Sbjct: 339 SPALFLAIG-VLYDRYKSRILNYYSGLVQVMPLFAI 373
>gi|188996807|ref|YP_001931058.1| proton-translocating NADH-quinone oxidoreductase subunit M
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931874|gb|ACD66504.1| proton-translocating NADH-quinone oxidoreductase, chain M
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 502
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 173/373 (46%), Positives = 245/373 (65%), Gaps = 5/373 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+K WI F I Y +G+D LSL + LTA + + S +I+K++ EY AFLIL
Sbjct: 68 EKYAWIPQFGISYEVGVDALSLTLVWLTALSFVAAFVWSTNIEKRIKEYFIAFLILEAAC 127
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F A D + FY+F+E LIP+F+IIG WG + R YAA KFF+YT GSL +LI +I +
Sbjct: 128 IGVFVAFDLVAFYVFWEVMLIPMFLIIGVWGYAERIYAATKFFIYTFFGSLFLLIGVIGM 187
Query: 341 YYISNKSFNILSWHQLSITKIE-----QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
Y + NILS + K+ ++ F+ + FAIK+P+WP HTWLP AHV+AP
Sbjct: 188 YIYNYMENNILSTSYFDLLKLHLPFNLELIFFLLLALGFAIKVPMWPFHTWLPAAHVQAP 247
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILAA++LK+G YG +RFSLP FP+AS YF +I LS+I+IIY +++A+ Q IK
Sbjct: 248 TSGSVILAAVLLKMGTYGFVRFSLPWFPEASKYFVPVIFALSVIAIIYTAMMAIAQTHIK 307
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
+LIAYSS++HMGFVT+G F L + GAII MISH L S A+F++ GF+Y ++ + +
Sbjct: 308 RLIAYSSVSHMGFVTMGTFALNPEGVNGAIITMISHGLTSGALFLAAGFIYERLHSYEMK 367
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+ GG+ +P F+ F+I ++A+ LPG SGF+GEF+ ++ K + VL +L+
Sbjct: 368 DLGGMAKFVPVFATLFMISAMASAGLPGLSGFVGEFLSLVGTFKVSILTAVLAGLSLVVG 427
Query: 576 AAYSLCLSKNIIF 588
AAY+L L K +F
Sbjct: 428 AAYTLWLYKKTMF 440
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 40 FLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-EL 96
FL+ +G K +P HTWLP + ++ PT S ++ AA ++ G + R S P F E
Sbjct: 219 FLLLALGFAIKVPMWPFHTWLPAAHVQAPTSGSVIL-AAVLLKMGTYGFVRFSLPWFPEA 277
Query: 97 SNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSI 153
S + +I + I + ++ I Q IKR+IAYS++S +G++T+G L +I
Sbjct: 278 SKYFVPVIFALSVIAIIYTAMMAIAQTHIKRLIAYSSVSHMGFVTMGTFALNPEGVNGAI 337
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H LFL+AG I H+ +++++GG+ K++P+ +I ++ G P
Sbjct: 338 ITMISHGLTSGALFLAAG-FIYERLHSYEMKDLGGMAKFVPVFATLFMISAMASAGLPGL 396
Query: 214 SGF 216
SGF
Sbjct: 397 SGF 399
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 41/294 (13%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L++ Y+ E+M + + ++I I+ AA K+FI S F+L G+ +Y I
Sbjct: 135 DLVAFYVFWEVMLIPMFLIIGVWGYAERIY---AATKFFIYTFFGSLFLLIGVIGMY-IY 190
Query: 658 GTLE----LQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASII 713
+E S F+++KL+ + ++ + LL+ +G + K+ + PFH W+P + A
Sbjct: 191 NYMENNILSTSYFDLLKLH-LPFNLELIFFLLLALGFAIKVPMWPFHTWLPAAHVQAP-- 247
Query: 714 ITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQK----ILLILAIFSLIIGNVSAI 765
T+ + L ++ ++ ++ LP K ++ L++ ++I + AI
Sbjct: 248 ------TSGSVILAAVLLKMGTYGFVRFSLPWFPEASKYFVPVIFALSVIAIIYTAMMAI 301
Query: 766 TQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
Q + KR+IAYSS++HMG + ++ N I GL G
Sbjct: 302 AQTHIKRLIAYSSVSHMGFVTMGTFALNPEGVNGAIITMISHGL------------TSGA 349
Query: 826 IILLKNNTCNK--TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
+ L + + E+ G+ + P A + MI + AG P GF +F
Sbjct: 350 LFLAAGFIYERLHSYEMKDLGGMAKFVPVFATLFMISAMASAGLPGLSGFVGEF 403
>gi|187477552|ref|YP_785576.1| NADH dehydrogenase I subunit L [Bordetella avium 197N]
gi|115422138|emb|CAJ48662.1| NADH dehydrogenase I chain L [Bordetella avium 197N]
Length = 671
Score = 333 bits (853), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 172/272 (63%), Positives = 191/272 (70%), Gaps = 53/272 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN+ QLF GWE VG+ SYLLIGFWY +P AI AN+KAFLINR
Sbjct: 139 MSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAY 198
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQ PLH WLPDSMEGP
Sbjct: 199 AGTMHYGEVFAQADKLAGMQLPGSDWALLTVACICLFIGAMGKSAQVPLHAWLPDSMEGP 258
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+ R SPLFELS+ ALS I+ IG+I A F+G+LGIIQ+DIKR
Sbjct: 259 TPISALIHAATMVTAGIFMVARFSPLFELSDVALSFIIVIGSIGALFLGVLGIIQHDIKR 318
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
+IAYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M HNQDIR+MG
Sbjct: 319 VIAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHNQDIRHMG 378
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GL KYMPIT IT L+G L+LVG PFFSGFYSK
Sbjct: 379 GLRKYMPITWITFLLGTLALVGTPFFSGFYSK 410
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 96/172 (55%), Gaps = 16/172 (9%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + RFS P+F + S II + I
Sbjct: 246 PLHAWLPDS-MEGPTPISALIHAATMVTAGIFMVARFS-PLFELSDVALS-FIIVIGSIG 302
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ ++ ++Q DIK++IAYS+++ +G++T+ L + A+ +++HA + +F+
Sbjct: 303 ALFLGVLGIIQHDIKRVIAYSTLSQLGYMTVA---LGASAYSVAVFHLMTHAFFKALLFL 359
Query: 501 S-----IGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGF 547
IG +NQ I + GG+ +P + F++ +LA P SGF
Sbjct: 360 GAGSVIIGMHHNQD----IRHMGGLRKYMPITWITFLLGTLALVGTPFFSGF 407
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 143/298 (47%), Gaps = 24/298 (8%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NN++ ++ G E + L +LI + A +K F++ + GF
Sbjct: 129 LFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGFWYTRPTAIFANMKAFLINRVGDFGF 188
Query: 646 MLYGISILYGITGTLELQSIFNV------IKLNNINCSVLALSLLLIIVGLSFKLGISPF 699
+L GI +L+ GT+ +F ++L + ++L ++ + + +G K P
Sbjct: 189 VL-GIGLLFAYAGTMHYGEVFAQADKLAGMQLPGSDWALLTVACICLFIGAMGKSAQVPL 247
Query: 700 HMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLV-INWQKILLILAIFSLI 758
H W+PD +G + I L+ + T + ++ R L L + I++I +I +L
Sbjct: 248 HAWLPDSMEGPTPISALIHAATMVTAGIFMVARF--SPLFELSDVALSFIIVIGSIGALF 305
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
+G V I Q++ KR+IAYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 306 LG-VLGIIQHDIKRVIAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAFFKALLF--- 358
Query: 819 ILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VII + +N ++ GL + P + ++ +L G P GFY+K
Sbjct: 359 -LGAGSVIIGMHHN-----QDIRHMGGLRKYMPITWITFLLGTLALVGTPFFSGFYSK 410
>gi|225024111|ref|ZP_03713303.1| hypothetical protein EIKCOROL_00979 [Eikenella corrodens ATCC
23834]
gi|224943136|gb|EEG24345.1| hypothetical protein EIKCOROL_00979 [Eikenella corrodens ATCC
23834]
Length = 669
Score = 332 bits (852), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 193/273 (70%), Gaps = 52/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ + AI ANLKAFL+NR+G
Sbjct: 136 MSNNFIQLFFGWEAVGLVSYLLIGFYFKRDSAIFANLKAFLVNRVGDFGFVLGIGLVLAY 195
Query: 47 --------------------------------------AMAKSAQFPLHTWLPDSMEGPT 68
AM KSAQFPLH WLPDSMEGPT
Sbjct: 196 FGGSLRYADVFAYLPNVVGSTLFGWDLITITCLLLFVGAMGKSAQFPLHVWLPDSMEGPT 255
Query: 69 PASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRI 128
P SALIHAATMVTAG+FM++RMSP++ELS TALS+I+ IGAITA FMG LG IQNDIKR+
Sbjct: 256 PISALIHAATMVTAGLFMVSRMSPMYELSTTALSVIMVIGAITALFMGFLGTIQNDIKRV 315
Query: 129 IAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
+AYSTLSQLGYMTV LGVSAY+V++FH+MTHAFFKALLFL+AGS+II M H+QD+RNMGG
Sbjct: 316 VAYSTLSQLGYMTVALGVSAYSVAMFHVMTHAFFKALLFLAAGSVIIGMHHDQDMRNMGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
L KYMPIT T L+G L+L+G P FSGFYSKD
Sbjct: 376 LRKYMPITWFTMLLGNLALIGTPLFSGFYSKDS 408
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 97/170 (57%), Gaps = 11/170 (6%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + R S P++ ++ S +I+ + I+
Sbjct: 242 PLHVWLPDS-MEGPTPISALIHAATMVTAGLFMVSRMS-PMYELSTTALS-VIMVIGAIT 298
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ + +Q DIK+++AYS+++ +G++T+ + ++ S+ A+ +++HA + +F+
Sbjct: 299 ALFMGFLGTIQNDIKRVVAYSTLSQLGYMTVAL-GVSAYSV--AMFHVMTHAFFKALLFL 355
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
+ G + + + N GG+ +P + + L N +L GT F G
Sbjct: 356 AAGSVIIGMHHDQDMRNMGGLRKYMP---ITWFTMLLGNLALIGTPLFSG 402
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F +++I NN + ++ G E + L +LI + + IF A +K F++ +
Sbjct: 126 LFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGFYFKRDSAIF---ANLKAFLVNRVGD 182
Query: 644 -GFMLYGIS-ILYGITGTLELQSIF----NVIKLNNINCSVLALSLLLIIVGLSFKLGIS 697
GF+L GI +L G+L +F NV+ ++ ++ LL+ VG K
Sbjct: 183 FGFVL-GIGLVLAYFGGSLRYADVFAYLPNVVGSTLFGWDLITITCLLLFVGAMGKSAQF 241
Query: 698 PFHMWVPDVYQGASIIITLLLSTT-PKLSLFVI-----IYRLLIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T LF++ +Y L L I++I
Sbjct: 242 PLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPMYELSTTAL-------SVIMVI 294
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F
Sbjct: 295 GAITALFMGFLGTI-QNDIKRVVAYSTLSQLGYM---TVALGVSAYSVAMFHVMTHAFFK 350
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + L A VII + ++ ++ GL + P M++ +L G P
Sbjct: 351 ALLF----LAAGSVIIGMHHD-----QDMRNMGGLRKYMPITWFTMLLGNLALIGTPLFS 401
Query: 872 GFYAKFFIFEKI 883
GFY+K I E +
Sbjct: 402 GFYSKDSIIEAV 413
>gi|121609751|ref|YP_997558.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Verminephrobacter eiseniae EF01-2]
gi|121554391|gb|ABM58540.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Verminephrobacter eiseniae EF01-2]
Length = 673
Score = 332 bits (852), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 173/276 (62%), Positives = 194/276 (70%), Gaps = 55/276 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNNL QLF GWE VG+ SYLLIGFW++KP A+ ANLKAFL+NR+G
Sbjct: 142 MSNNLLQLFFGWEAVGLISYLLIGFWFNKPSAVFANLKAFLVNRVGDLGFILGIGLIAAH 201
Query: 47 ----------AMAK-------------------------------SAQFPLHTWLPDSME 65
A AK SAQFPLH WLPDSME
Sbjct: 202 AGTLNYAELFAFAKSGQFGALLLPGTDWMLITVICICLFIGAMGKSAQFPLHVWLPDSME 261
Query: 66 GPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDI 125
GPTP SALIHAATMVTAGIFM+ RMSPLFELS+ AL+ IL IGAITA FMG LGIIQNDI
Sbjct: 262 GPTPISALIHAATMVTAGIFMVARMSPLFELSDAALNFILVIGAITALFMGFLGIIQNDI 321
Query: 126 KRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRN 185
KR++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ + HNQDIR
Sbjct: 322 KRVVAYSTLSQLGYMTVALGASAYSVALFHLMTHAFFKALLFLGAGSVIMGVHHNQDIRW 381
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
MGGL K+MPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 MGGLRKHMPITWITSLLGSLALIGTPLFSGFYSKDS 417
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 104/199 (52%), Gaps = 17/199 (8%)
Query: 365 WLFIT-----FFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFS 418
W+ IT FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S
Sbjct: 229 WMLITVICICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS 287
Query: 419 LPIFP--DASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFML 476
P+F DA+ N I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L
Sbjct: 288 -PLFELSDAAL---NFILVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---L 340
Query: 477 TKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFS 535
+ A+ +++HA + +F+ G + + I GG+ +P + ++ S
Sbjct: 341 GASAYSVALFHLMTHAFFKALLFLGAGSVIMGVHHNQDIRWMGGLRKHMPITWITSLLGS 400
Query: 536 LANCSLPGTSGFIGEFMII 554
LA P SGF + II
Sbjct: 401 LALIGTPLFSGFYSKDSII 419
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 146/311 (46%), Gaps = 26/311 (8%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFAMLMLVMSNNLLQLFFGWEAVGLISYLLIGFWFNKPSAVFANLKAFLVNRVGDLGF 191
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII--------VGLSFKLGIS 697
+L GI ++ GTL +F K +L + ++I +G K
Sbjct: 192 IL-GIGLIAAHAGTLNYAELFAFAKSGQFGALLLPGTDWMLITVICICLFIGAMGKSAQF 250
Query: 698 PFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-LIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T + ++ R+ + L +N+ IL+I AI +
Sbjct: 251 PLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDAALNF--ILVIGAITA 308
Query: 757 LIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYI 816
L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F + +
Sbjct: 309 LFMGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVALFHLMTHAFFKALLF- 363
Query: 817 FAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAK 876
LGA VI+ + +N ++ GL + P + ++ +L G P GFY+K
Sbjct: 364 ---LGAGSVIMGVHHN-----QDIRWMGGLRKHMPITWITSLLGSLALIGTPLFSGFYSK 415
Query: 877 FFIFEKIFETQ 887
I E + +
Sbjct: 416 DSIIEAVHSSH 426
>gi|294670447|ref|ZP_06735329.1| hypothetical protein NEIELOOT_02166 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307911|gb|EFE49154.1| hypothetical protein NEIELOOT_02166 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 669
Score = 332 bits (851), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 193/273 (70%), Gaps = 52/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ + AI ANLKAFL+NR+G
Sbjct: 136 MSNNFIQLFFGWEAVGLVSYLLIGFYFKRDSAIFANLKAFLVNRVGDFGFVLGIGLVLAY 195
Query: 47 --------------------------------------AMAKSAQFPLHTWLPDSMEGPT 68
AM KSAQFPLH WLPDSMEGPT
Sbjct: 196 FGGSLRYADVFAYLPNVVGSTLFGWDLITITCLLLFVGAMGKSAQFPLHVWLPDSMEGPT 255
Query: 69 PASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRI 128
P SALIHAATMVTAG+FM++RMSP++ELS TALS+I+ IGAITA FMG LG IQNDIKR+
Sbjct: 256 PISALIHAATMVTAGLFMVSRMSPIYELSTTALSVIMVIGAITALFMGFLGTIQNDIKRV 315
Query: 129 IAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
+AYSTLSQLGYMTV LGVSAY+V++FH+MTHAFFKALLFL+AGS+II M H+QD+RNMGG
Sbjct: 316 VAYSTLSQLGYMTVALGVSAYSVAMFHVMTHAFFKALLFLAAGSVIIGMHHDQDMRNMGG 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
L KYMPIT T L+G L+L+G P FSGFYSKD
Sbjct: 376 LRKYMPITWFTMLLGNLALIGTPLFSGFYSKDS 408
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 97/170 (57%), Gaps = 11/170 (6%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + R S PI+ ++ S +I+ + I+
Sbjct: 242 PLHVWLPDS-MEGPTPISALIHAATMVTAGLFMVSRMS-PIYELSTTALS-VIMVIGAIT 298
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ + +Q DIK+++AYS+++ +G++T+ + ++ S+ A+ +++HA + +F+
Sbjct: 299 ALFMGFLGTIQNDIKRVVAYSTLSQLGYMTVAL-GVSAYSV--AMFHVMTHAFFKALLFL 355
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
+ G + + + N GG+ +P + + L N +L GT F G
Sbjct: 356 AAGSVIIGMHHDQDMRNMGGLRKYMP---ITWFTMLLGNLALIGTPLFSG 402
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 147/316 (46%), Gaps = 39/316 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F +++I NN + ++ G E + L +LI + + IF A +K F++ +
Sbjct: 126 LFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGFYFKRDSAIF---ANLKAFLVNRVGD 182
Query: 644 -GFMLYGIS-ILYGITGTLELQSIF----NVIKLNNINCSVLALSLLLIIVGLSFKLGIS 697
GF+L GI +L G+L +F NV+ ++ ++ LL+ VG K
Sbjct: 183 FGFVL-GIGLVLAYFGGSLRYADVFAYLPNVVGSTLFGWDLITITCLLLFVGAMGKSAQF 241
Query: 698 PFHMWVPDVYQGASIIITLLLSTT-PKLSLFVI-----IYRLLIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T LF++ IY L L I++I
Sbjct: 242 PLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPIYELSTTAL-------SVIMVI 294
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F
Sbjct: 295 GAITALFMGFLGTI-QNDIKRVVAYSTLSQLGYM---TVALGVSAYSVAMFHVMTHAFFK 350
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + L A VII + ++ ++ GL + P M++ +L G P
Sbjct: 351 ALLF----LAAGSVIIGMHHD-----QDMRNMGGLRKYMPITWFTMLLGNLALIGTPLFS 401
Query: 872 GFYAKFFIFEKIFETQ 887
GFY+K I E + +
Sbjct: 402 GFYSKDSIIEAVHASN 417
>gi|374092092|gb|AEY83710.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Plagiochila
asplenioides]
Length = 410
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/367 (47%), Positives = 253/367 (68%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+SL+F+ T F+T I IL+ + EYM AF I +I
Sbjct: 4 WLPYPNINFYIGIDGISLFFVISTTFLTPICILVGFYSVGSYKKEYMIAFFIRESFLIAV 63
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
+LD ++FY+FFE+ LIP+FII G WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 64 SRSLDPLIFYVFFESVLIPMFIITGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 123
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 124 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG RFS+P+FP+A+ YF+ I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 182 LAGILSKLGTYGFSRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYS 241
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F I+G I+ M+SH L+SSA+F+ +G Y++ KTR++ +GG++
Sbjct: 242 SVAHMNFVTIGMFSPNIQGIEGNILLMLSHGLVSSALFLCVGAPYDRHKTRIVKYYGGLV 301
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P S + F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 302 STMPISSTISLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLW 361
Query: 582 LSKNIIF 588
L ++F
Sbjct: 362 LYNRVVF 368
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A + G + +R S P+F + + ++
Sbjct: 157 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILSKLGTYGFSRFSIPMFPEATLYFTPFIYA 215
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G+ + +I +++H
Sbjct: 216 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSPNIQGIEGNILLMLSHGLVS 275
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G+ K + ++ GGL MPI+ SL L+ + P S F
Sbjct: 276 SALFLCVGAPYDRHK-TRIVKYYGGLVSTMPISSTISLFFTLANMSLPGTSSF 327
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 26/266 (9%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
+AA ++F+ ++ S FML I ++ TGT +LQ ++ + L +
Sbjct: 98 KAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQ----ILLTTEFSERRQILLWIAFFAS 153
Query: 690 LSFKLGISPFHMWVPDVYQGA----SIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW 745
S K+ + P H+W+P+ + A S+I+ +LS KL + R I + +
Sbjct: 154 FSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILS---KLGTYGF-SRFSIPMFPEATLYF 209
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS--IKTSHNNLIIFN 803
+ L++ ++I +++ I Q + K++IAYSS+AHM + + S I+ N+++
Sbjct: 210 TPFIYALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSPNIQGIEGNILLML 269
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
S GL + + +F +GA +KT + + GL P + I + F +
Sbjct: 270 S--HGL--VSSALFLCVGA--------PYDRHKTRIVKYYGGLVSTMPISSTISLFFTLA 317
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKI 889
P T F +F I F+ +
Sbjct: 318 NMSLPGTSSFIGEFLILVGAFQRNSL 343
>gi|283795036|ref|YP_003359451.1| NADH dehydrogenase subunit 4 [Synedra acus]
gi|261279692|gb|ACX62000.1| NADH dehydrogenase subunit 4 [Synedra acus]
Length = 499
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 176/395 (44%), Positives = 264/395 (66%), Gaps = 5/395 (1%)
Query: 196 TCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLII 255
TC+ L+ L L+ G + W+D+ N+ G+DG+S++FI LT + ++
Sbjct: 52 TCVVFLLSLSCLIFFDKREGAFQMKFNFRWLDFVNMNLNFGVDGISIFFIILTTLLIMLC 111
Query: 256 ILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNR 315
+L++ D L + FL+L L++ F LD + FYIFFE+ LIP+F+IIG WG R
Sbjct: 112 VLVNWD-TSSLKINLICFLVLEFLLVNVFSILDLLFFYIFFESVLIPMFLIIGIWGSRQR 170
Query: 316 SYAAIKF-FLYTLMGSLLMLISMIYLYY-ISNKSFNILSWHQLSITKIEQIWLFITFFIA 373
A F FLYT++GS+LMLI+++Y+Y + ++ IL + S +EQ L+I FF++
Sbjct: 171 RIRASYFLFLYTVLGSILMLIAILYIYVQVGTTNYEILLTFRFS--TLEQYILWIVFFLS 228
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLI 433
FA KIP+ P H WLP+AHVEAPT GSVILA I+LKLG YG LRFSLP+FP+AS+YFS +I
Sbjct: 229 FATKIPMIPTHLWLPEAHVEAPTSGSVILAGILLKLGSYGFLRFSLPLFPEASFYFSPMI 288
Query: 434 ITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHAL 493
T++ I II+ S A+ Q D K++IAY+S+AHM V LGIF I + G+IIQ +SH
Sbjct: 289 YTIASIGIIFASFTAIRQTDFKRIIAYTSVAHMNLVVLGIFSFNAIGLAGSIIQSLSHGF 348
Query: 494 ISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMI 553
++SA+F+ IG +Y++ +R++ +GG+++V+P +S F+ F++AN LPGTS F+GEF+I
Sbjct: 349 VASALFLLIGVVYDRHGSRMVKYYGGLVHVMPMYSTIFLFFTMANIGLPGTSSFVGEFLI 408
Query: 554 ILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++ + KFN + VL +T++I YSL L +I+
Sbjct: 409 LIGSFKFNTTVTVLGATSMIIGGCYSLWLFNRVIY 443
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P H WLP++ +E PT S ++ A ++ G + R S PLF ++ S +++
Sbjct: 231 TKIPMIPTHLWLPEAHVEAPTSGSVIL-AGILLKLGSYGFLRFSLPLFPEASFYFSPMIY 289
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTH 159
I +I F I Q D KRIIAY++++ + + +G +G++ SI ++H
Sbjct: 290 TIASIGIIFASFTAIRQTDFKRIIAYTSVAHMNLVVLGIFSFNAIGLAG---SIIQSLSH 346
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
F + LFL G ++ + ++ ++ GGL MP+ L ++ +G P S F
Sbjct: 347 GFVASALFLLIG-VVYDRHGSRMVKYYGGLVHVMPMYSTIFLFFTMANIGLPGTSSF 402
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 37/270 (13%)
Query: 620 ASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVL 679
S++ I A+ F+ +L S ML I +Y GT + L S L
Sbjct: 166 GSRQRRI---RASYFLFLYTVLGSILMLIAILYIYVQVGTTNYE------ILLTFRFSTL 216
Query: 680 ALSLLLIIVGLSF--KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL---- 733
+L I+ LSF K+ + P H+W+P+ + A T+ + L I+ +L
Sbjct: 217 EQYILWIVFFLSFATKIPMIPTHLWLPEAHVEAP--------TSGSVILAGILLKLGSYG 268
Query: 734 LIKCLLPLV----INWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI 789
++ LPL + ++ +A +I + +AI Q +FKR+IAY+S+AHM L++ I
Sbjct: 269 FLRFSLPLFPEASFYFSPMIYTIASIGIIFASFTAIRQTDFKRIIAYTSVAHMNLVVLGI 328
Query: 790 ISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQR 849
S I S G ++ + +F ++G + + + + GL
Sbjct: 329 FSFNAIGLAGSIIQSLSHG--FVASALFLLIGVV--------YDRHGSRMVKYYGGLVHV 378
Query: 850 NPWCALIMMIFMFSLAGFPPTIGFYAKFFI 879
P + I + F + G P T F +F I
Sbjct: 379 MPMYSTIFLFFTMANIGLPGTSSFVGEFLI 408
>gi|397689138|ref|YP_006526392.1| NADH dehydrogenase subunit M [Melioribacter roseus P3M]
gi|395810630|gb|AFN73379.1| NADH dehydrogenase subunit M [Melioribacter roseus P3M]
Length = 488
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 185/423 (43%), Positives = 287/423 (67%), Gaps = 16/423 (3%)
Query: 178 KHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGI 237
K N+ GL+ I+ I +I L+ G S + + +WI+ N+ YF+G+
Sbjct: 7 KDNEKFIKWTGLF----ISLIAFVISLVVYAGFNSASPGFQFTHQTLWIESLNVSYFVGV 62
Query: 238 DGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFF 296
DG+SL + LT F+T + +L + I K + + + L+L ++G F +LD LFYIF+
Sbjct: 63 DGISLILVLLTTFLTPLTLLSTWKAIDKNVKMFTFSMLLLEAGMLGVFISLDLFLFYIFW 122
Query: 297 EATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-YYISNK----SFNIL 351
EA LIP++ IIG WGG R YA++KFFLYT+ GSLLML+++I+L Y +N+ S N+L
Sbjct: 123 EAMLIPMYFIIGIWGGERRIYASVKFFLYTMFGSLLMLVAIIWLAVYAANQTGAFSTNLL 182
Query: 352 SWHQL--SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
+++ +IT+ Q W+F+ FF++FAIK+P++P+HTWLPDAHVEAPT GSVILA ++LK+
Sbjct: 183 ELYKVAPTITRDIQNWMFLAFFLSFAIKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKM 242
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YGL+RF+LP+FP ++ ++ +I L++I IIY +L+AMVQ D+KKL+AYSS++H+GFV
Sbjct: 243 GTYGLVRFNLPLFPQSAIQYAPIISALAVIGIIYGALVAMVQPDMKKLVAYSSVSHLGFV 302
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
LGIF ++QGA+IQM++H L + A+F+ +G +Y + R I+ +GGI ++P +S
Sbjct: 303 VLGIFAFNSEALQGAVIQMVNHGLSTGALFLLVGAIYERTHRRDIAYYGGIARIVPLYST 362
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKF----NFCIGVLTSTALIFSAAYSLCLSKN 585
+I SL++ LPG +GFIGEF+I+L A K ++ V +T +IF+A Y L + +
Sbjct: 363 ILMIVSLSSIGLPGLNGFIGEFLILLGAFKSEVLGSWWYVVFAATGVIFAAVYLLWMYQR 422
Query: 586 IIF 588
++F
Sbjct: 423 VVF 425
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IILF 106
K FPLHTWLPD+ +E PT A ++I A ++ G + + R + PLF S + II
Sbjct: 210 KVPLFPLHTWLPDAHVEAPT-AGSVILAGVLLKMGTYGLVRFNLPLFPQSAIQYAPIISA 268
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q D+K+++AYS++S LG++ +G+ A ++ ++ H
Sbjct: 269 LAVIGIIYGALVAMVQPDMKKLVAYSSVSHLGFVVLGIFAFNSEALQGAVIQMVNHGLST 328
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
LFL G+ I H +DI GG+ + +P+ +I LS +G P +GF
Sbjct: 329 GALFLLVGA-IYERTHRRDIAYYGGIARIVPLYSTILMIVSLSSIGLPGLNGF 380
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 36/272 (13%)
Query: 631 AAIKYFILGILSSGFMLYGISIL--YGITGT-------LELQSIFNVIKLNNINCSVLAL 681
A++K+F+ + S ML I L Y T LEL + I + N LA
Sbjct: 144 ASVKFFLYTMFGSLLMLVAIIWLAVYAANQTGAFSTNLLELYKVAPTITRDIQNWMFLAF 203
Query: 682 SLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPL 741
L + K+ + P H W+PD + A +++L+ L + L++ LPL
Sbjct: 204 FL-----SFAIKVPLFPLHTWLPDAHVEAPTAGSVILAGV----LLKMGTYGLVRFNLPL 254
Query: 742 ----VINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHN 797
I + I+ LA+ +I G + A+ Q + K+++AYSS++H+G ++ I + +
Sbjct: 255 FPQSAIQYAPIISALAVIGIIYGALVAMVQPDMKKLVAYSSVSHLGFVVLGIFAFNSEAL 314
Query: 798 NLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDI--FIGLHQRNPWCAL 855
+ + GL + G + LL +T DI + G+ + P +
Sbjct: 315 QGAVIQMVNHGL------------STGALFLLVGAIYERTHRRDIAYYGGIARIVPLYST 362
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
I+MI S G P GF +F I F+++
Sbjct: 363 ILMIVSLSSIGLPGLNGFIGEFLILLGAFKSE 394
>gi|374092118|gb|AEY83723.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Metzgeria
furcata]
Length = 437
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/367 (47%), Positives = 256/367 (69%), Gaps = 5/367 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI +++GIDG+S +F+ LT F+T I IL+ L +K EYM AF + I
Sbjct: 31 WLPYPNINFYIGIDGISSFFVILTTFLTPIRILVGLYSVKSYEKEYMIAFFVRESFPIAV 90
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC+LD ++FY+F E+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++
Sbjct: 91 FCSLDLLIFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFF 150
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +F++K+P+ P+H LP+AHVEAPT GSVI
Sbjct: 151 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIRLPEAHVEAPTAGSVI 208
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG LRFS+P+FP+A+ + + I LS+I+IIY SL + QID+KK+IAYS
Sbjct: 209 LAGILSKLGTYGFLRFSIPMFPEATLHSTPFIYVLSVIAIIYTSLTTIRQIDLKKIIAYS 268
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM FVT+G+F L I+G+I+ M+SH L+SSA+ + +G Y++ KTR++ +GG++
Sbjct: 269 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALSLCVGAPYDRHKTRIVKYYGGLV 328
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P S F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYS
Sbjct: 329 STMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSPW 388
Query: 582 LSKNIIF 588
L ++F
Sbjct: 389 LYNRVVF 395
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+H LP++ +E PT A ++I A + G + R S P+F E + + I
Sbjct: 184 KVPMVPVHIRLPEAHVEAPT-AGSVILAGILSKLGTYGFLRFSIPMFPEATLHSTPFIYV 242
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFFK 163
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 243 LSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVS 302
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ L L G+ K + ++ GGL MPI+ L L+ + P S F
Sbjct: 303 SALSLCVGAPYDRHK-TRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSF 354
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 97/197 (49%), Gaps = 12/197 (6%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 95 DLLIFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 154
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ ++ + L + S K+ + P H+ +P+ + A S+I+
Sbjct: 155 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIRLPEAHVEAPTAGSVILA 210
Query: 716 LLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
+LS KL + + R I ++ + +L++ ++I +++ I Q + K++IA
Sbjct: 211 GILS---KLGTYGFL-RFSIPMFPEATLHSTPFIYVLSVIAIIYTSLTTIRQIDLKKIIA 266
Query: 776 YSSIAHMGLMLFSIISI 792
YSS+AHM + + S+
Sbjct: 267 YSSVAHMNFVTIGMFSL 283
>gi|218670800|ref|ZP_03520471.1| NADH dehydrogenase subunit M [Rhizobium etli GR56]
Length = 349
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/295 (51%), Positives = 224/295 (75%), Gaps = 1/295 (0%)
Query: 294 IFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSW 353
+FFEA LIP+F+IIG WGG +R YA+ KFFLYTL+GS+LML++++ +Y+ + + +I +
Sbjct: 1 VFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTT-DITAL 59
Query: 354 HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG 413
Q WL++ FF +FA+K+P+WP+HTWLPDAHV+APT GSVILA ++LKLG YG
Sbjct: 60 LAYKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 119
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
L+RFSL +FP AS YF+ L+ LS+I+IIY SL+AM+Q DIKKLIAYSS+AHMG+VT+GI
Sbjct: 120 LIRFSLGMFPVASDYFAPLVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGI 179
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFII 533
F +QG+I QM+SH ++S A+F+ +G +Y++ TR I+ +GG++N +P ++V ++
Sbjct: 180 FAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMV 239
Query: 534 FSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++AN LPGTSGF+GEF+ ++ + N + + +T +I SAAY+L L + +IF
Sbjct: 240 FTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIF 294
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K +P+HTWLPD+ ++ PT A ++I A ++ G + + R S +F +++ + ++F
Sbjct: 83 KMPMWPVHTWLPDAHVQAPT-AGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 141
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ I + L+ ++Q+DIK++IAYS+++ +GY+T+G+ + SIF +++H
Sbjct: 142 LSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVS 201
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LFL G ++ + H ++I GGL MP + ++ ++ VG P SGF +
Sbjct: 202 GALFLCVG-VVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 256
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 128/286 (44%), Gaps = 22/286 (7%)
Query: 610 LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVI 669
L+ + L + + K+ +++S K+F+ +L S ML I +Y GT ++ ++
Sbjct: 7 LIPMFLIIGVWGGKDRVYASY---KFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLA-- 61
Query: 670 KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFV 728
++ L + K+ + P H W+PD + Q + +L KL +
Sbjct: 62 --YKFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 119
Query: 729 IIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLF 787
+I L + P+ ++ ++ L++ ++I ++ A+ Q + K++IAYSS+AHMG +
Sbjct: 120 LIRFSL--GMFPVASDYFAPLVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTM 177
Query: 788 SIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLH 847
I + IF G+ + GA + + + + + T E++ + GL
Sbjct: 178 GIFAANMQGVQGSIFQMLSHGI---------VSGALFLCVGVVYDRTH-TREINAYGGLV 227
Query: 848 QRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLL 893
P A+ MM+F + G P T GF +F +F W+ L
Sbjct: 228 NNMPKYAVAMMVFTMANVGLPGTSGFVGEFLTLIGVFRVNT-WVAL 272
>gi|372450303|ref|YP_005090485.1| NADH dehydrogenase subunit 4 (mitochondrion) [Lotus japonicus]
gi|357197349|gb|AET62945.1| NADH dehydrogenase subunit 4 (mitochondrion) [Lotus japonicus]
Length = 495
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 249/366 (68%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI + LGIDGLS +F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYSNINFHLGIDGLSFFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GSL ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTADLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG LRFS+P+FP+A+ F+ I T S I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILSKLGTYGFLRFSIPMFPEATLCFTPFIYTPSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSIPLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS +LAN SLPGTS FIGEF+I + A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTISFFSTLANMSLPGTSSFIGEFLISVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P+H WLP++ +E PT A ++I A + G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILSKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 PSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSIPLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 47.8 bits (112), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 18/199 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I+
Sbjct: 198 ADLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 716 LLLS---TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+LS T L + ++ C P + I ++I +++ + Q + K+
Sbjct: 254 GILSKLGTYGFLRFSIPMFPEATLCFTPFIYTPSAI-------AIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIIS 791
+IAYSS+AHM L+ + S
Sbjct: 307 IIAYSSVAHMNLVTIGMFS 325
>gi|350545171|ref|ZP_08914676.1| NADH-ubiquinone oxidoreductase chain L [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527062|emb|CCD39003.1| NADH-ubiquinone oxidoreductase chain L [Candidatus Burkholderia
kirkii UZHbot1]
Length = 684
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 190/274 (69%), Gaps = 53/274 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR---------------- 44
MSNN QLF GWE VG+ SYLLIGF++ + AI ANLKAFL+NR
Sbjct: 137 MSNNFLQLFFGWEAVGLVSYLLIGFYFTRESAIYANLKAFLVNRVGDFGFLLGIGLLMGF 196
Query: 45 -------------------------------------IGAMAKSAQFPLHTWLPDSMEGP 67
IGAM KSAQFPLH WLPDSMEGP
Sbjct: 197 AGSLNYGDVFAQGDKLATMTFPGTSWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGP 256
Query: 68 TPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
TP SALIHAATMVTAGIFM+T MSPLFE S+ ALS + IGAITA FMG LG++QNDIKR
Sbjct: 257 TPISALIHAATMVTAGIFMVTCMSPLFEHSDAALSFVTVIGAITALFMGFLGVVQNDIKR 316
Query: 128 IIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG 187
++AYSTLSQLGYMTV LGVSAY V++FHL THAFFKALLFL AGS+II M H+QD+RNMG
Sbjct: 317 VVAYSTLSQLGYMTVALGVSAYPVAVFHLGTHAFFKALLFLGAGSVIIGMHHDQDMRNMG 376
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
GL KYMPIT ITSLIG L+L+G PFF+GFYSKD
Sbjct: 377 GLAKYMPITWITSLIGSLALIGTPFFAGFYSKDS 410
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 36/311 (11%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAI----KYFILGILS 642
+F ++++ NN L ++ G E + L +LI F+ E+AI K F++ +
Sbjct: 127 LFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFY----FTRESAIYANLKAFLVNRVG 182
Query: 643 SGFMLYGISILYGITGTLELQSIFN------VIKLNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G G+L +F + + +L ++ + + +G K
Sbjct: 183 DFGFLLGIGLLMGFAGSLNYGDVFAQGDKLATMTFPGTSWGLLTVACICLFIGAMGKSAQ 242
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKIL----LIL 752
P H+W+PD +G + I L+ + T V ++ C+ PL + L +I
Sbjct: 243 FPLHVWLPDSMEGPTPISALIHAAT-----MVTAGIFMVTCMSPLFEHSDAALSFVTVIG 297
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
AI +L +G + + Q + KR++AYS+++ +G M +++ S + +F+ F
Sbjct: 298 AITALFMGFL-GVVQNDIKRVVAYSTLSQLGYM---TVALGVSAYPVAVFHLGTHAFFKA 353
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ + LGA VII + ++ ++ GL + P + +I +L G P G
Sbjct: 354 LLF----LGAGSVIIGMHHD-----QDMRNMGGLAKYMPITWITSLIGSLALIGTPFFAG 404
Query: 873 FYAKFFIFEKI 883
FY+K I E +
Sbjct: 405 FYSKDSIIEAV 415
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 16/225 (7%)
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVI 401
++ +F SW L++ I FI K +P+H WLPD+ +E PT ++I
Sbjct: 212 LATMTFPGTSWGLLTVACI-------CLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALI 263
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
AA M+ G + + S P+F + S + + I+ +++ + +VQ DIK+++AYS
Sbjct: 264 HAATMVTAGIFMVTCMS-PLFEHSDAALS-FVTVIGAITALFMGFLGVVQNDIKRVVAYS 321
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLYNQMKTRLISNFGGI 520
+++ +G++T+ L + A+ + +HA + +F+ G + + + N GG+
Sbjct: 322 TLSQLGYMTVA---LGVSAYPVAVFHLGTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGL 378
Query: 521 INVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIG 565
+P + +I SLA P +GF + II AVK++ G
Sbjct: 379 AKYMPITWITSLIGSLALIGTPFFAGFYSKDSII-EAVKYSHLAG 422
>gi|332528762|ref|ZP_08404739.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Hylemonella gracilis ATCC 19624]
gi|332041828|gb|EGI78177.1| proton-translocating NADH-quinone oxidoreductase subunit l
[Hylemonella gracilis ATCC 19624]
Length = 693
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/278 (61%), Positives = 193/278 (69%), Gaps = 57/278 (20%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNNL QLF GWE VG+ SYLLIGFWY+KP AI AN+KAFL+NR+G
Sbjct: 142 MSNNLLQLFFGWEAVGLVSYLLIGFWYNKPTAIFANMKAFLVNRVGDFGFILGIGLIAAY 201
Query: 47 --------AMAKSAQ-----FP------------------------------LHTWLPDS 63
AK+ Q FP LH WLPDS
Sbjct: 202 AGTLNYSEVFAKANQLGAIEFPWYILGQDAMLITVICICLFIGAMGKSAQFPLHVWLPDS 261
Query: 64 MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQN 123
MEGPTP SALIHAATMVTAGIFM+ RMSPL+ELS+TALS I+ IGAITA FMG LGIIQN
Sbjct: 262 MEGPTPISALIHAATMVTAGIFMVARMSPLYELSDTALSFIMVIGAITALFMGFLGIIQN 321
Query: 124 DIKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDI 183
DIKR++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+I+ M HNQDI
Sbjct: 322 DIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIMGMHHNQDI 381
Query: 184 RNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
R MGG+ KYMPIT ITSL+G L+L+G P FSGFYSKD
Sbjct: 382 RWMGGVRKYMPITWITSLLGSLALIGTPLFSGFYSKDS 419
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 100/189 (52%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I FI K +P+H WLPD+ +E PT ++I AA M+ G + + R S P++ +
Sbjct: 239 ICLFIGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLYELSD 296
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S I+ + I+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 297 TALS-FIMVIGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 352
Query: 487 QMISHALISSAMFISIGFLYNQM-KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + M + I GG+ +P + ++ SLA P S
Sbjct: 353 HLMTHAFFKALLFLGAGSVIMGMHHNQDIRWMGGVRKYMPITWITSLLGSLALIGTPLFS 412
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 413 GFYSKDSII 421
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 145/319 (45%), Gaps = 40/319 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI N + A +K F++ + GF
Sbjct: 132 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWYNKPTAIFANMKAFLVNRVGDFGF 191
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINC-----SVLALSLLLIIV-------GLSFK 693
+L GI ++ GTL +F K N + +L +LI V G K
Sbjct: 192 IL-GIGLIAAYAGTLNYSEVFA--KANQLGAIEFPWYILGQDAMLITVICICLFIGAMGK 248
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPLVINWQKI 748
P H+W+PD +G + I L+ + T + ++ R+ L L I
Sbjct: 249 SAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLYELSDTALSF------I 302
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
++I AI +L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+
Sbjct: 303 MVIGAITALFMGFL-GIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHA 358
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
F + + LGA VI+ + +N ++ G+ + P + ++ +L G P
Sbjct: 359 FFKALLF----LGAGSVIMGMHHN-----QDIRWMGGVRKYMPITWITSLLGSLALIGTP 409
Query: 869 PTIGFYAKFFIFEKIFETQ 887
GFY+K I E + E+
Sbjct: 410 LFSGFYSKDSIIEAVHESH 428
>gi|302879330|ref|YP_003847894.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Gallionella capsiferriformans ES-2]
gi|302582119|gb|ADL56130.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Gallionella capsiferriformans ES-2]
Length = 686
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 171/276 (61%), Positives = 189/276 (68%), Gaps = 55/276 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPL----------------------------- 31
MSNN QLF GWE VG+ SYLLIGFWY +P
Sbjct: 133 MSNNFMQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLKAFLVNRVGDFGFLLGIGLVLMV 192
Query: 32 -------AITANLKAFLINR-------------------IGAMAKSAQFPLHTWLPDSME 65
A+ AN+ A + +GAM KSAQFPLH WLPDSME
Sbjct: 193 FGTLDYAAVFANVAAHADDMAPIAGMSVNLLTAICILLFVGAMGKSAQFPLHVWLPDSME 252
Query: 66 GPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDI 125
GPTP SALIHAATMVTAGIFM+ RMSP+FELS+TALS ++ IGAITA FMG LGIIQNDI
Sbjct: 253 GPTPISALIHAATMVTAGIFMVARMSPMFELSDTALSFVMIIGAITALFMGFLGIIQNDI 312
Query: 126 KRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRN 185
KR+IAYSTLSQLGYMTV LG SAY V+IFHLMTHAFFKALLFL AGS+II M H+QDIRN
Sbjct: 313 KRVIAYSTLSQLGYMTVALGASAYPVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRN 372
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
MGG+ KYMPIT ITSLIG L+L+G PFFSGFYSKD
Sbjct: 373 MGGVRKYMPITWITSLIGSLALIGTPFFSGFYSKDS 408
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I F+ K +P+H WLPD+ +E PT ++I AA M+ G + + R S P+F +
Sbjct: 228 ILLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PMFELSD 285
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++ + I+ +++ + ++Q DIK++IAYS+++ +G++T+ L + AI
Sbjct: 286 TALS-FVMIIGAITALFMGFLGIIQNDIKRVIAYSTLSQLGYMTVA---LGASAYPVAIF 341
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + I N GG+ +P + +I SLA P S
Sbjct: 342 HLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGVRKYMPITWITSLIGSLALIGTPFFS 401
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 402 GFYSKDSII 410
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 146/322 (45%), Gaps = 32/322 (9%)
Query: 575 SAAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIK 634
A Y S +F ++++ NN + ++ G E + L +LI + A +K
Sbjct: 111 DAGYQRFFSYISLFTFSMLMLVMSNNFMQLFFGWEAVGLVSYLLIGFWYTRPTAIYANLK 170
Query: 635 YFILGILSSGFMLYGISILYGITGTLELQSIF--------NVIKLNNINCSVLALSLLLI 686
F++ + L GI ++ + GTL+ ++F ++ + ++ ++L +L+
Sbjct: 171 AFLVNRVGDFGFLLGIGLVLMVFGTLDYAAVFANVAAHADDMAPIAGMSVNLLTAICILL 230
Query: 687 IVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL-----LIKCLLPL 741
VG K P H+W+PD +G + I L+ + T + ++ R+ L L
Sbjct: 231 FVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPMFELSDTALSF 290
Query: 742 VINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLII 801
V ++I AI +L +G + I Q + KR+IAYS+++ +G M +++ S + I
Sbjct: 291 V------MIIGAITALFMGFL-GIIQNDIKRVIAYSTLSQLGYM---TVALGASAYPVAI 340
Query: 802 FNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFM 861
F+ F + + LGA VII + ++ ++ G+ + P + +I
Sbjct: 341 FHLMTHAFFKALLF----LGAGSVIIGMHHD-----QDIRNMGGVRKYMPITWITSLIGS 391
Query: 862 FSLAGFPPTIGFYAKFFIFEKI 883
+L G P GFY+K I E +
Sbjct: 392 LALIGTPFFSGFYSKDSIIEAV 413
>gi|94502713|ref|YP_588294.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays]
gi|114151576|ref|YP_740373.1| NADH dehydrogenase subunit 4 [Zea perennis]
gi|114151608|ref|YP_740452.1| NADH dehydrogenase subunit 4 [Zea luxurians]
gi|114151642|ref|YP_740400.1| NADH dehydrogenase subunit 4 [Zea mays subsp. parviglumis]
gi|115278614|ref|YP_762511.1| NADH dehydrogenase subunit 4 [Tripsacum dactyloides]
gi|40795152|gb|AAR91196.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays]
gi|93116050|gb|ABE98683.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp. mays]
gi|93116094|gb|ABE98726.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp. mays]
gi|93116141|gb|ABE98772.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays]
gi|102567910|gb|ABF70827.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea perennis]
gi|102567975|gb|ABF70859.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp.
parviglumis]
gi|102579643|gb|ABF70923.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp. mays]
gi|110287604|gb|ABG65650.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea luxurians]
gi|114432105|gb|ABI74654.1| NADH dehydrogenase subunit 4 (mitochondrion) [Tripsacum
dactyloides]
Length = 495
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 252/366 (68%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I I + + EY++AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C LD +LFY+ E+ IP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 SCMLDPLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIPGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIPGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 27/251 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLS---IYLG 607
F +IL+ CI V S F Y F++ + +MI+ + +L Y+
Sbjct: 92 FFVILTTFLIPICISVGWSGMRSFGKEYITA------FLIREFLMIAVSCMLDPLLFYVL 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 SESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIIS 791
HM L+ + S
Sbjct: 315 HMNLVTIGMFS 325
>gi|115278544|ref|YP_762351.1| NADH dehydrogenase subunit 4 [Sorghum bicolor]
gi|114309665|gb|ABI60882.1| NADH dehydrogenase subunit 4 (mitochondrion) [Sorghum bicolor]
Length = 495
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 252/366 (68%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I I + + EY++AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C LD +LFY+ E+ IP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 SCMLDPLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 47.4 bits (111), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 27/251 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLS---IYLG 607
F +IL+ CI V S F Y F++ + +MI+ + +L Y+
Sbjct: 92 FFVILTTFLIPICISVGWSGMRSFGKEYITA------FLIREFLMIAVSCMLDPLLFYVL 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 SESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIIS 791
HM L+ + S
Sbjct: 315 HMNLVTIGMFS 325
>gi|11465635|ref|NP_049306.1| NADH dehydrogenase subunit 4 [Porphyra purpurea]
gi|4106942|gb|AAD03109.1| NADH dehydrogenase subunit 4 [Porphyra purpurea]
Length = 488
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 171/366 (46%), Positives = 252/366 (68%), Gaps = 3/366 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W +NIYY +GIDG+SL+FI LT ++ +LIS I ++ EY+ FL L ++I
Sbjct: 69 WFPSYNIYYTIGIDGISLFFIILTTWLVTTCVLISWTMINTQIKEYLICFLTLEFILIQV 128
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD + FYIFFE+ LIP+F+IIG WG R AA +FF+YTL GSLLML++++ +Y+
Sbjct: 129 FCVLDVIFFYIFFESVLIPMFLIIGIWGSRQRKIRAAYQFFIYTLAGSLLMLLAILVIYF 188
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + W+ +S QI L+++FF + A+KIP+ P H WLP+AH EAPT GSVIL
Sbjct: 189 QQGTTDIQILWN-VSFDTRTQILLWLSFFSSLAVKIPMIPFHIWLPEAHAEAPTAGSVIL 247
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A ++LK+G YG LRFSLP+ P+AS YFS LI LS+++ +Y SL + Q+D+KK+IAYSS
Sbjct: 248 AGVLLKMGGYGFLRFSLPMLPEASLYFSPLIYLLSIVAAVYASLTTIRQVDLKKIIAYSS 307
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
++HMGFVTLG+F ++G+II M+SH L+SSA+F+ +G LY++ KTR++ +GG++
Sbjct: 308 VSHMGFVTLGLFSFNLQGLEGSIILMLSHGLVSSALFLCVGILYDRHKTRILKYYGGLVQ 367
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
V+P FS+ + F+ +N PGTS F+GEF+++ K + L++ ++I A YS+ L
Sbjct: 368 VMPIFSILLLFFTFSNIGFPGTSSFVGEFLVLTGLFKVSSISTFLSAFSMILGAGYSIWL 427
Query: 583 SKNIIF 588
I F
Sbjct: 428 FNRICF 433
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALS-IIL 105
K P H WLP++ E PT A ++I A ++ G + R S P+ ++ S +I
Sbjct: 221 VKIPMIPFHIWLPEAHAEAPT-AGSVILAGVLLKMGGYGFLRFSLPMLPEASLYFSPLIY 279
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFF 162
+ + A + L I Q D+K+IIAYS++S +G++T+GL + SI +++H
Sbjct: 280 LLSIVAAVYASLTTIRQVDLKKIIAYSSVSHMGFVTLGLFSFNLQGLEGSIILMLSHGLV 339
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G I+ + + ++ GGL + MPI I L S +G P S F
Sbjct: 340 SSALFLCVG-ILYDRHKTRILKYYGGLVQVMPIFSILLLFFTFSNIGFPGTSSF 392
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 16/261 (6%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA ++FI + S ML I ++Y GT ++Q ++NV + + L L
Sbjct: 163 RAAYQFFIYTLAGSLLMLLAILVIYFQQGTTDIQILWNV----SFDTRTQILLWLSFFSS 218
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
L+ K+ + PFH+W+P+ + A +++L+ K+ + + R + L + + +
Sbjct: 219 LAVKIPMIPFHIWLPEAHAEAPTAGSVILAGVLLKMGGYGFL-RFSLPMLPEASLYFSPL 277
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
+ +L+I + + +++ I Q + K++IAYSS++HMG + + S I G
Sbjct: 278 IYLLSIVAAVYASLTTIRQVDLKKIIAYSSVSHMGFVTLGLFSFNLQGLEGSIILMLSHG 337
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
L + + +F +G IL +KT L + GL Q P +++++ F FS GFP
Sbjct: 338 L--VSSALFLCVG-----ILYDR---HKTRILKYYGGLVQVMPIFSILLLFFTFSNIGFP 387
Query: 869 PTIGFYAKFFIFEKIFETQKI 889
T F +F + +F+ I
Sbjct: 388 GTSSFVGEFLVLTGLFKVSSI 408
>gi|14255|emb|CAA40452.1| NADH-ubiquinone oxidoreductase chain 4 [Triticum aestivum]
gi|21824|emb|CAA40453.1| NADH-ubiquinone oxidoreductase chain 4 [Triticum aestivum]
Length = 495
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 252/366 (68%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I I + + EY++AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C LD +LFY+ E+ IP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 SCMLDPLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 47.4 bits (111), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 27/251 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLS---IYLG 607
F +IL+ CI V S F Y F++ + +MI+ + +L Y+
Sbjct: 92 FFVILTTFLIPICISVGWSGMRSFGKEYITA------FLIREFLMIAVSCMLDPLLFYVL 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 SESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIIS 791
HM L+ + S
Sbjct: 315 HMNLVTIGMFS 325
>gi|319943359|ref|ZP_08017641.1| NADH-quinone oxidoreductase subunit L [Lautropia mirabilis ATCC
51599]
gi|319743174|gb|EFV95579.1| NADH-quinone oxidoreductase subunit L [Lautropia mirabilis ATCC
51599]
Length = 670
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 170/277 (61%), Positives = 190/277 (68%), Gaps = 56/277 (20%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKP------------------------------ 30
MSNNL QLF GWE VG+ SYLLIGFWY KP
Sbjct: 131 MSNNLLQLFFGWEAVGLVSYLLIGFWYTKPSAIYANLKAFMVNRVGDFGFVLGIGLLVAW 190
Query: 31 ---------LAITANLKAFLINRIG-----------------AMAKSAQFPLHTWLPDSM 64
A NL+ I IG AM KSAQFPLH WLPDSM
Sbjct: 191 TGSLDYAEIFAAAPNLEKVTIQLIGDTPWSLITVTCICLFVGAMGKSAQFPLHVWLPDSM 250
Query: 65 EGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQND 124
EGPTP SALIHAATMVTAGIFM++RMSPL+E+S ALS ++ IGAITAFFMGL+GIIQND
Sbjct: 251 EGPTPISALIHAATMVTAGIFMVSRMSPLYEMSEVALSFVMIIGAITAFFMGLMGIIQND 310
Query: 125 IKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIR 184
IKR++AYSTLSQLGYMTV LG SAY+V++FHLMTHAFFKALLFL AGS+II M H+QDIR
Sbjct: 311 IKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDIR 370
Query: 185 NMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
+MGGL KYMPIT +TSLIG L+LVG PFFSGFYSK+
Sbjct: 371 HMGGLRKYMPITWVTSLIGSLALVGTPFFSGFYSKES 407
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 147/317 (46%), Gaps = 39/317 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F ++++ NNLL ++ G E + L +LI + A +K F++ + GF
Sbjct: 121 LFTFSMLMLVMSNNLLQLFFGWEAVGLVSYLLIGFWYTKPSAIYANLKAFMVNRVGDFGF 180
Query: 646 MLYGISILYGITGTLELQSIF----NVIK-----LNNINCSVLALSLLLIIVGLSFKLGI 696
+L GI +L TG+L+ IF N+ K + + S++ ++ + + VG K
Sbjct: 181 VL-GIGLLVAWTGSLDYAEIFAAAPNLEKVTIQLIGDTPWSLITVTCICLFVGAMGKSAQ 239
Query: 697 SPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFS 756
P H+W+PD +G + I L+ + T V ++ + PL ++ + F
Sbjct: 240 FPLHVWLPDSMEGPTPISALIHAAT-----MVTAGIFMVSRMSPL----YEMSEVALSFV 290
Query: 757 LIIGNVSA-------ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
+IIG ++A I Q + KR++AYS+++ +G M +++ S ++ +F+
Sbjct: 291 MIIGAITAFFMGLMGIIQNDIKRVVAYSTLSQLGYM---TVALGASAYSVAVFHLMTHAF 347
Query: 810 FYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPP 869
F + + LGA VII + ++ ++ GL + P + +I +L G P
Sbjct: 348 FKALLF----LGAGSVIIGMHHD-----QDIRHMGGLRKYMPITWVTSLIGSLALVGTPF 398
Query: 870 TIGFYAKFFIFEKIFET 886
GFY+K I E +
Sbjct: 399 FSGFYSKESIIEAVHHA 415
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 368 ITFFIAFAIKIPIWPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDAS 426
I F+ K +P+H WLPD+ +E PT ++I AA M+ G + + R S P++ +
Sbjct: 227 ICLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVSRMS-PLYEMSE 284
Query: 427 YYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAII 486
S ++I + I+ ++ L+ ++Q DIK+++AYS+++ +G++T+ L + A+
Sbjct: 285 VALSFVMI-IGAITAFFMGLMGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVF 340
Query: 487 QMISHALISSAMFISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTS 545
+++HA + +F+ G + + I + GG+ +P V +I SLA P S
Sbjct: 341 HLMTHAFFKALLFLGAGSVIIGMHHDQDIRHMGGLRKYMPITWVTSLIGSLALVGTPFFS 400
Query: 546 GFIGEFMII 554
GF + II
Sbjct: 401 GFYSKESII 409
>gi|81176524|ref|YP_398409.1| nad4 [Triticum aestivum]
gi|78675248|dbj|BAE47673.1| nad4 [Triticum aestivum]
gi|164422219|gb|ABY55192.1| NADH dehydrogenase subunit 4 [Bambusa oldhamii]
gi|169649060|gb|ACA62621.1| nad4 [Triticum aestivum]
gi|291498610|gb|ADE08084.1| nad4-1 [Triticum aestivum]
gi|291498611|gb|ADE08085.1| nad4-2 [Triticum aestivum]
gi|291498612|gb|ADE08086.1| nad4-3 [Triticum aestivum]
Length = 495
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 252/366 (68%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I I + + EY++AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C LD +LFY+ E+ IP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 SCMLDPLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 47.0 bits (110), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 27/251 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLS---IYLG 607
F +IL+ CI V S F Y F++ + +MI+ + +L Y+
Sbjct: 92 FFVILTTFLIPICISVGWSGMRSFGKEYITA------FLIREFLMIAVSCMLDPLLFYVL 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 SESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIIS 791
HM L+ + S
Sbjct: 315 HMNLVTIGMFS 325
>gi|89280740|ref|YP_514653.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group]
gi|194033233|ref|YP_002000570.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group]
gi|23495394|dbj|BAC19875.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group]
gi|74100107|gb|AAZ99271.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica
Group]
gi|74100162|gb|AAZ99325.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Japonica
Group]
gi|74100216|gb|AAZ99378.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Japonica
Group]
gi|285026179|dbj|BAI68011.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group]
gi|353685251|gb|AER13014.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica
Group]
gi|353685325|gb|AER13087.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica
Group]
gi|374277632|gb|AEZ03738.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica
Group]
gi|374277697|gb|AEZ03802.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica
Group]
Length = 495
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 252/366 (68%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I I + + EY++AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
C LD +LFY+ E+ IP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 SCMLDPLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF- 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 LSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 46.6 bits (109), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 27/251 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLS---IYLG 607
F +IL+ CI V S F Y F++ + +MI+ + +L Y+
Sbjct: 92 FFVILTTFLIPICISVGWSGMRSFGKEYITA------FLIREFLMIAVSCMLDPLLFYVL 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 SESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIIS 791
HM L+ + S
Sbjct: 315 HMNLVTIGMFS 325
>gi|73667094|ref|YP_303110.1| proton-translocating NADH-quinoneoxidoreductase, chain M [Ehrlichia
canis str. Jake]
gi|72394235|gb|AAZ68512.1| NADH dehydrogenase subunit M [Ehrlichia canis str. Jake]
Length = 485
Score = 330 bits (845), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 171/312 (54%), Positives = 229/312 (73%), Gaps = 7/312 (2%)
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F +LD ++FYIFFEA LIP+F IIG WG +R YA K FLYTL+GSLL LI+++Y+
Sbjct: 117 IGVFASLDIIMFYIFFEAVLIPMFFIIGIWGHEDRVYATFKLFLYTLVGSLLFLIALLYV 176
Query: 341 YYISNKSFNI--LSW---HQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
Y+ S++ +I L++ + L++T Q W++I FF++FAIKIP+ P HTWLPDAHV+AP
Sbjct: 177 YFFSDRVSDIEKLTYILSNYLNLT--AQKWVWIAFFVSFAIKIPVVPFHTWLPDAHVQAP 234
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSV+LA I++K+G Y LLRFS+P+ P+AS YF+N +I LS+I++IY SLI+ VQ +IK
Sbjct: 235 TVGSVLLAGILIKIGTYALLRFSIPMLPEASVYFANFVIVLSIIAVIYASLISFVQNNIK 294
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
KLIAYSSIAHMGFVT GIF + I GA+ QMISH LIS+A+F +G LYN+ T IS
Sbjct: 295 KLIAYSSIAHMGFVTAGIFSFNEYGISGAVFQMISHGLISAALFTCVGILYNKTHTLEIS 354
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+ G+ ++P FS+ FI FS+A+ +LPGTSGFIGEF+ IL ++ VL + +I
Sbjct: 355 KYSGLAKIMPQFSIMFIFFSMASIALPGTSGFIGEFLSILGVFHYSKLFSVLIAVGVILG 414
Query: 576 AAYSLCLSKNII 587
A Y L L K II
Sbjct: 415 ALYMLFLCKKII 426
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILFIGAIT 111
P HTWLPD+ ++ PT S L+ A ++ G + + R S P+ E S + ++ + I
Sbjct: 221 PFHTWLPDAHVQAPTVGSVLL-AGILIKIGTYALLRFSIPMLPEASVYFANFVIVLSIIA 279
Query: 112 AFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-GVSAYTVS--IFHLMTHAFFKALLFL 168
+ L+ +QN+IK++IAYS+++ +G++T G+ + Y +S +F +++H A LF
Sbjct: 280 VIYASLISFVQNNIKKLIAYSSIAHMGFVTAGIFSFNEYGISGAVFQMISHGLISAALFT 339
Query: 169 SAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
G I+ N H +I GL K MP I + ++ + P SGF
Sbjct: 340 CVG-ILYNKTHTLEISKYSGLAKIMPQFSIMFIFFSMASIALPGTSGF 386
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 12/210 (5%)
Query: 688 VGLSFKLGISPFHMWVPDVY-QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQ 746
V + K+ + PFH W+PD + Q ++ LL K+ + ++ R I L + +
Sbjct: 211 VSFAIKIPVVPFHTWLPDAHVQAPTVGSVLLAGILIKIGTYALL-RFSIPMLPEASVYFA 269
Query: 747 KILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCD 806
+++L+I ++I ++ + Q N K++IAYSSIAHMG + I S + +F
Sbjct: 270 NFVIVLSIIAVIYASLISFVQNNIKKLIAYSSIAHMGFVTAGIFSFNEYGISGAVFQMIS 329
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
GL I +F +G +L N T T E+ + GL + P +++ + F +
Sbjct: 330 HGL--ISAALFTCVG------ILYNKT--HTLEISKYSGLAKIMPQFSIMFIFFSMASIA 379
Query: 867 FPPTIGFYAKFFIFEKIFETQKIWLLLLII 896
P T GF +F +F K++ +L+ +
Sbjct: 380 LPGTSGFIGEFLSILGVFHYSKLFSVLIAV 409
>gi|349575431|ref|ZP_08887348.1| NADH-quinone oxidoreductase subunit L [Neisseria shayeganii 871]
gi|348013010|gb|EGY51937.1| NADH-quinone oxidoreductase subunit L [Neisseria shayeganii 871]
Length = 672
Score = 330 bits (845), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 192/273 (70%), Gaps = 52/273 (19%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
MSNN QLF GWE VG+ SYLLIGF++ + AI ANLKAFL+NR+G
Sbjct: 136 MSNNFIQLFFGWEAVGLVSYLLIGFYFKRESAIFANLKAFLVNRVGDFGFILGIGLVLAY 195
Query: 47 --------------------------------------AMAKSAQFPLHTWLPDSMEGPT 68
AM KSAQFPLH WLPDSMEGPT
Sbjct: 196 FGGSLRYADVFAYLPNVVGMQIFGWDLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPT 255
Query: 69 PASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRI 128
P SALIHAATMVTAG+FM++RMSP++ELS TALS+I+ IGAITA FMG LG IQNDIKR+
Sbjct: 256 PISALIHAATMVTAGLFMVSRMSPIYELSTTALSVIMVIGAITALFMGFLGTIQNDIKRV 315
Query: 129 IAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG 188
+AYSTLSQLGYMTV LGVSAY++++FH+MTHAFFKALLFL+AGS II M H+QD+R+MG
Sbjct: 316 VAYSTLSQLGYMTVALGVSAYSIAMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGN 375
Query: 189 LYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
L KYMPIT IT LIG LSL+G P FSGFYSKD
Sbjct: 376 LKKYMPITWITMLIGNLSLIGTPLFSGFYSKDS 408
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 147/312 (47%), Gaps = 39/312 (12%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN + ++ G E + L +LI +++ IF A +K F++ +
Sbjct: 126 LFTFSMLMLVMSNNFIQLFFGWEAVGLVSYLLIGFYFKRESAIF---ANLKAFLVNRVGD 182
Query: 644 -GFMLYGIS-ILYGITGTLELQSIF----NVIKLNNINCSVLALSLLLIIVGLSFKLGIS 697
GF+L GI +L G+L +F NV+ + ++ ++ LL+ VG K
Sbjct: 183 FGFIL-GIGLVLAYFGGSLRYADVFAYLPNVVGMQIFGWDLITVTCLLLFVGAMGKSAQF 241
Query: 698 PFHMWVPDVYQGASIIITLLLSTT-PKLSLFVI-----IYRLLIKCLLPLVINWQKILLI 751
P H+W+PD +G + I L+ + T LF++ IY L L I++I
Sbjct: 242 PLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPIYELSTTAL-------SVIMVI 294
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFY 811
AI +L +G + I Q + KR++AYS+++ +G M +++ S ++ +F+ F
Sbjct: 295 GAITALFMGFLGTI-QNDIKRVVAYSTLSQLGYM---TVALGVSAYSIAMFHVMTHAFFK 350
Query: 812 IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTI 871
+ + L A II + ++ ++ L + P + M+I SL G P
Sbjct: 351 ALLF----LAAGSAIIGMHHD-----QDMRHMGNLKKYMPITWITMLIGNLSLIGTPLFS 401
Query: 872 GFYAKFFIFEKI 883
GFY+K I E +
Sbjct: 402 GFYSKDSIIEAV 413
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 106/186 (56%), Gaps = 15/186 (8%)
Query: 381 WPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+P+H WLPD+ +E PT ++I AA M+ G + + R S PI+ ++ S +I+ + I
Sbjct: 241 FPLHVWLPDS-MEGPTPISALIHAATMVTAGLFMVSRMS-PIYELSTTALS-VIMVIGAI 297
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+ +++ + +Q DIK+++AYS+++ +G++T+ + ++ SI A+ +++HA + +F
Sbjct: 298 TALFMGFLGTIQNDIKRVVAYSTLSQLGYMTVAL-GVSAYSI--AMFHVMTHAFFKALLF 354
Query: 500 ISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT---SGFIGEFMIIL 555
++ G + + + + G + +P + +I + N SL GT SGF + II
Sbjct: 355 LAAGSAIIGMHHDQDMRHMGNLKKYMP---ITWITMLIGNLSLIGTPLFSGFYSKDSII- 410
Query: 556 SAVKFN 561
AV F+
Sbjct: 411 EAVHFS 416
>gi|94265861|ref|ZP_01289591.1| Proton-translocating NADH-quinone oxidoreductase, chain M [delta
proteobacterium MLMS-1]
gi|93453597|gb|EAT03993.1| Proton-translocating NADH-quinone oxidoreductase, chain M [delta
proteobacterium MLMS-1]
Length = 507
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/374 (45%), Positives = 253/374 (67%), Gaps = 2/374 (0%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y + WI+ +NI Y LGIDG+SL + +T I + +L S I+K++ E+M L+
Sbjct: 65 YQFGEHHTWIEAWNINYTLGIDGISLLLVLMTTLIMPLCVLGSWRYIQKRVKEFMICLLL 124
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ ++G F ALD +LFYIF+EA LIP++++I WGG R YA+IKFFLYTL GS+++L+
Sbjct: 125 METAMLGVFMALDFVLFYIFWEAMLIPMYLLIAVWGGPRRMYASIKFFLYTLAGSVMLLV 184
Query: 336 SMIYLYYISN-KSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
++I L+ S ++F+I + S + QIW+F+ FF+AFAIK+P++P HTWLP AHVEA
Sbjct: 185 AIIALFLTSEPQTFSIPLLMEQSYSTTFQIWVFLAFFLAFAIKVPMFPFHTWLPAAHVEA 244
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSVILA+++LK+G YG LRF LPI P+A++ F I+ LS+I I+Y A+ Q D+
Sbjct: 245 PTAGSVILASVLLKMGTYGFLRFCLPITPEATHIFMPYILWLSIIGILYGGFTALAQQDM 304
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KKLIAYSS+ HMGFVTLGIF+L IQGAI+QMI+H + + A+F +G LY + +R +
Sbjct: 305 KKLIAYSSVGHMGFVTLGIFVLNSQGIQGAILQMINHGITTGALFFCVGMLYERTHSREL 364
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+ G+ +P + +F F+L++ + PGT+ FIGEFMI+ + ++ I +
Sbjct: 365 ALNAGVGRFMPIYVLFLGFFALSSLAFPGTNSFIGEFMILAGSFSYSIIIAAFAIPGAVL 424
Query: 575 SAAYSLCLSKNIIF 588
+AAY L + +++
Sbjct: 425 AAAYMFRLLQRVVW 438
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 82/154 (53%), Gaps = 12/154 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR----MSPLFELSNTALSII 104
K FP HTWLP + +E PT A ++I A+ ++ G + R ++P E ++ + I
Sbjct: 227 KVPMFPFHTWLPAAHVEAPT-AGSVILASVLLKMGTYGFLRFCLPITP--EATHIFMPYI 283
Query: 105 LFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLMTHAF 161
L++ I + G + Q D+K++IAYS++ +G++T+G+ V +I ++ H
Sbjct: 284 LWLSIIGILYGGFTALAQQDMKKLIAYSSVGHMGFVTLGIFVLNSQGIQGAILQMINHGI 343
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LF G ++ H++++ G+ ++MPI
Sbjct: 344 TTGALFFCVG-MLYERTHSRELALNAGVGRFMPI 376
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 20/203 (9%)
Query: 688 VGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK 747
+ + K+ + PFH W+P + A +++L++ + L + Y L CL P+
Sbjct: 222 LAFAIKVPMFPFHTWLPAAHVEAPTAGSVILAS---VLLKMGTYGFLRFCL-PITPEATH 277
Query: 748 I----LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFN 803
I +L L+I ++ G +A+ Q + K++IAYSS+ HMG + I + + I
Sbjct: 278 IFMPYILWLSIIGILYGGFTALAQQDMKKLIAYSSVGHMGFVTLGIFVLNSQGIQGAILQ 337
Query: 804 SCDSGLFYIITYIFAILGA-FGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMF 862
+ G+ GA F + +L T ++ EL + G+ + P L + F
Sbjct: 338 MINHGI---------TTGALFFCVGMLYERTHSR--ELALNAGVGRFMPIYVLFLGFFAL 386
Query: 863 SLAGFPPTIGFYAKFFIFEKIFE 885
S FP T F +F I F
Sbjct: 387 SSLAFPGTNSFIGEFMILAGSFS 409
>gi|225848111|ref|YP_002728274.1| NADH-quinone oxidoreductase subunit mu [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644517|gb|ACN99567.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit
m) (ndh-1 subunit m) [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 502
Score = 329 bits (843), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 169/373 (45%), Positives = 244/373 (65%), Gaps = 5/373 (1%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+K WI F I Y +G+D LSL + LTA ++ + S +I+K++ EY AFL+L
Sbjct: 68 EKYSWIPQFGINYEVGVDALSLTMVWLTAISFVVAFIWSTNIEKRIKEYFVAFLVLEAAC 127
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F A D + FY+F+E LIP+F+IIG WG + R YAA KFF+YT GSL +LI +I +
Sbjct: 128 IGVFVAWDLVAFYVFWEVMLIPMFLIIGVWGYAERIYAATKFFIYTFFGSLFLLIGVIGM 187
Query: 341 YYISNKSFNILSWHQLSITKIE-----QIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAP 395
Y + N+LS + K+ +I F+ + FAIK+P+WP HTWLP AHV+AP
Sbjct: 188 YIYNYMENNVLSMSYFDLLKLSLPHNLEIIFFLLLALGFAIKVPMWPFHTWLPAAHVQAP 247
Query: 396 TEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIK 455
T GSVILAA++LK+G YG +RF+LP FP+AS YF ++ L +I+IIY +++A+ Q IK
Sbjct: 248 TAGSVILAAVLLKMGTYGFVRFNLPWFPEASKYFVPVMFALGVIAIIYTAMMAIAQTHIK 307
Query: 456 KLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLIS 515
+LIAYSS++HMGFVT+G F L + GAII MISH L S A+F++ GF+Y ++ + +
Sbjct: 308 RLIAYSSVSHMGFVTIGTFALNTEGVNGAIITMISHGLTSGALFLAAGFIYERLHSYEMK 367
Query: 516 NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
+ GG+ +P F+ F+I ++A+ LPG SGF+GEF+ +L K + L +L+
Sbjct: 368 DLGGMAKFVPVFATLFMISAMASAGLPGLSGFVGEFLALLGTFKVSILTAALAGLSLVVG 427
Query: 576 AAYSLCLSKNIIF 588
AAY+L L K +F
Sbjct: 428 AAYTLWLYKRTMF 440
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 40 FLINRIGAMAKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-EL 96
FL+ +G K +P HTWLP + ++ PT A ++I AA ++ G + R + P F E
Sbjct: 219 FLLLALGFAIKVPMWPFHTWLPAAHVQAPT-AGSVILAAVLLKMGTYGFVRFNLPWFPEA 277
Query: 97 SNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSI 153
S + ++ +G I + ++ I Q IKR+IAYS++S +G++T+G L +I
Sbjct: 278 SKYFVPVMFALGVIAIIYTAMMAIAQTHIKRLIAYSSVSHMGFVTIGTFALNTEGVNGAI 337
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFF 213
+++H LFL+AG I H+ +++++GG+ K++P+ +I ++ G P
Sbjct: 338 ITMISHGLTSGALFLAAG-FIYERLHSYEMKDLGGMAKFVPVFATLFMISAMASAGLPGL 396
Query: 214 SGF 216
SGF
Sbjct: 397 SGF 399
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 33/290 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L++ Y+ E+M + + ++I I+ AA K+FI S F+L G+ +Y I
Sbjct: 135 DLVAFYVFWEVMLIPMFLIIGVWGYAERIY---AATKFFIYTFFGSLFLLIGVIGMY-IY 190
Query: 658 GTLE----LQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASII 713
+E S F+++KL+ + ++ + LL+ +G + K+ + PFH W+P + A
Sbjct: 191 NYMENNVLSMSYFDLLKLS-LPHNLEIIFFLLLALGFAIKVPMWPFHTWLPAAHVQAPTA 249
Query: 714 ITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQK----ILLILAIFSLIIGNVSAITQYN 769
+++L+ L + ++ LP K ++ L + ++I + AI Q +
Sbjct: 250 GSVILAAV----LLKMGTYGFVRFNLPWFPEASKYFVPVMFALGVIAIIYTAMMAIAQTH 305
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
KR+IAYSS++HMG + ++ T N I GL G + L
Sbjct: 306 IKRLIAYSSVSHMGFVTIGTFALNTEGVNGAIITMISHGL------------TSGALFLA 353
Query: 830 KNNTCNK--TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
+ + E+ G+ + P A + MI + AG P GF +F
Sbjct: 354 AGFIYERLHSYEMKDLGGMAKFVPVFATLFMISAMASAGLPGLSGFVGEF 403
>gi|372450280|ref|YP_005090463.1| NADH dehydrogenase subunit 4 (mitochondrion) [Millettia pinnata]
gi|357197326|gb|AET62923.1| NADH dehydrogenase subunit 4 (mitochondrion) [Millettia pinnata]
Length = 495
Score = 329 bits (843), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 248/366 (67%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI LGIDGLS +F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINLNLGIDGLSFFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF AFA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTADLQILLTTEFS--ERRQIFLWIAFFAAFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+ KLG YG LRFS+P+FP+A+ F+ I T S I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILSKLGTYGFLRFSIPMFPEATLCFTPFIYTPSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSIPLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS +LAN SLPGTS FIGEF+I + A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTISFFSTLANMSLPGTSSFIGEFLISVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P+H WLP++ +E PT A ++I A + G + R S P+F + + ++
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILSKLGTYGFLRFSIPMFPEATLCFTPFIYT 285
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 PSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSIPLMLSHGLVS 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 18/199 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SIIIT 715
+LQ I + + L ++ + K+ + P H+W+P+ + A S+I+
Sbjct: 198 ADLQ-ILLTTEFSERRQIFLWIAFF---AAFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 716 LLLS---TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+LS T L + ++ C P + I ++I +++ + Q + K+
Sbjct: 254 GILSKLGTYGFLRFSIPMFPEATLCFTPFIYTPSAI-------AIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIIS 791
+IAYSS+AHM L+ + S
Sbjct: 307 IIAYSSVAHMNLVTIGMFS 325
>gi|257095308|ref|YP_003168949.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257047832|gb|ACV37020.1| proton-translocating NADH-quinone oxidoreductase, chain L
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 698
Score = 328 bits (842), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 171/278 (61%), Positives = 189/278 (67%), Gaps = 57/278 (20%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKP------------------------------ 30
MSNN QLF GWE VG+ SYLLIGFWY +P
Sbjct: 133 MSNNFMQLFFGWEAVGLVSYLLIGFWYTRPTAIFANLKAFLVNRVGDFGFILGIGLVLAY 192
Query: 31 ---------------LAITANLKAFLINRI------------GAMAKSAQFPLHTWLPDS 63
+A + F NRI GAM KSAQ PLH WLPDS
Sbjct: 193 FGTLDYAAVFALAPAVAADTTIALFGENRIALMTAICILLFIGAMGKSAQVPLHVWLPDS 252
Query: 64 MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQN 123
MEGPTP SALIHAATMVTAGIFM+ RMSPLFELS+TALS ++ IG+ITA FMG LGIIQN
Sbjct: 253 MEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVIVIGSITALFMGFLGIIQN 312
Query: 124 DIKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDI 183
DIKR++AYSTLSQLGYMTV LGVSAY+V+IFHLMTHAFFKALLFL AGS+II M H+QDI
Sbjct: 313 DIKRVVAYSTLSQLGYMTVALGVSAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDI 372
Query: 184 RNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
RNMGGL KYMPIT ITSLIG L+L+G PFF+GFYSKD
Sbjct: 373 RNMGGLRKYMPITWITSLIGSLALIGTPFFAGFYSKDS 410
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 382 PMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLIS 440
P+H WLPD+ +E PT ++I AA M+ G + + R S P+F + S +I + I+
Sbjct: 244 PLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSDTALS-FVIVIGSIT 300
Query: 441 IIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
+++ + ++Q DIK+++AYS+++ +G++T+ + ++ S+ AI +++HA + +F+
Sbjct: 301 ALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVAL-GVSAYSV--AIFHLMTHAFFKALLFL 357
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMII 554
G + + I N GG+ +P + +I SLA P +GF + II
Sbjct: 358 GAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLIGSLALIGTPFFAGFYSKDSII 412
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 143/311 (45%), Gaps = 32/311 (10%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIA---SQKNNIFSSEAAIKYFILGILSS 643
+F ++++ NN + ++ G E + L +LI ++ IF++ +K F++ +
Sbjct: 123 LFTFSMLMLVMSNNFMQLFFGWEAVGLVSYLLIGFWYTRPTAIFAN---LKAFLVNRVGD 179
Query: 644 -GFMLYGISILYGITGTLELQSIF---------NVIKLNNINCSVLALSL-LLIIVGLSF 692
GF+L GI ++ GTL+ ++F I L N L ++ +L+ +G
Sbjct: 180 FGFIL-GIGLVLAYFGTLDYAAVFALAPAVAADTTIALFGENRIALMTAICILLFIGAMG 238
Query: 693 KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLIL 752
K P H+W+PD +G + I L+ + T + ++ R+ L L ++++
Sbjct: 239 KSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARM--SPLFELSDTALSFVIVI 296
Query: 753 AIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYI 812
+ + I Q + KR++AYS+++ +G M +++ S ++ IF+ F
Sbjct: 297 GSITALFMGFLGIIQNDIKRVVAYSTLSQLGYM---TVALGVSAYSVAIFHLMTHAFFKA 353
Query: 813 ITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIG 872
+ + LGA VII + ++ ++ GL + P + +I +L G P G
Sbjct: 354 LLF----LGAGSVIIGMHHD-----QDIRNMGGLRKYMPITWITSLIGSLALIGTPFFAG 404
Query: 873 FYAKFFIFEKI 883
FY+K I E +
Sbjct: 405 FYSKDSIIEAV 415
>gi|9653250|ref|NP_062496.1| NADH dehydrogenase subunit 4 [Chondrus crispus]
gi|1352567|sp|P48915.1|NU4M_CHOCR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName:
Full=NADH dehydrogenase subunit 4
gi|1334501|emb|CAA87623.1| NADH dehydrogenase (ubiquinone), subunit 4 [Chondrus crispus]
Length = 492
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 195/396 (49%), Positives = 279/396 (70%), Gaps = 3/396 (0%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
I+C+T L LL + + F+ +W +FN+YY +GIDG+SL+FI LT + +
Sbjct: 41 ISCLTFLFSLLLWIQFNSGTSFFQFSTTFLWFPFFNLYYTIGIDGISLFFILLTTLLIIS 100
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
IL+S I+ L +Y+ FLIL L+I F LD +LFYI+FE+ LIP+F+I+G WG
Sbjct: 101 CILVSWSSIQTNLKDYLICFLILEFLLIQVFSVLDLLLFYIYFESVLIPMFLIVGVWGSR 160
Query: 314 NRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFI 372
R AA +FFLYTL+GSLLML++++ +Y+ + + + W+ + ++I QI+L+++FF
Sbjct: 161 QRKIRAAYQFFLYTLIGSLLMLLALLNIYFQTGTTDLQILWY-IQFSEISQIFLWLSFFA 219
Query: 373 AFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNL 432
+FA+KIP+ P H WLP+AH EAPT GSVILA I+LK+G YG LRFSLP+FP AS +F+
Sbjct: 220 SFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLKMGGYGFLRFSLPMFPVASIFFTPF 279
Query: 433 IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHA 492
I TLSL++IIY SL + QID+KK+IAYSS++HMGFVT+GIF L I+G+I+ M+SH
Sbjct: 280 IFTLSLVAIIYASLTTLRQIDLKKIIAYSSVSHMGFVTIGIFSLNIQGIEGSILLMLSHG 339
Query: 493 LISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFM 552
L+SSA+F+ IG LY++ KTR+I + G+I V+P F VFF+ F+ AN PGTS FIGE +
Sbjct: 340 LVSSALFLCIGVLYDRYKTRVIKYYSGLIQVMPLFGVFFLFFTFANLGFPGTSSFIGEVL 399
Query: 553 IILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++LS+ + N + + S +IF AAYS+ L IIF
Sbjct: 400 VLLSSFQINKTLTLFASLGMIFGAAYSIWLFNRIIF 435
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P H WLP++ E PT A ++I A ++ G + R S P+F +++ + +F
Sbjct: 223 VKIPMIPFHIWLPEAHAEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPVASIFFTPFIF 281
Query: 107 IGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
++ A + L + Q D+K+IIAYS++S +G++T+G L + SI +++H
Sbjct: 282 TLSLVAIIYASLTTLRQIDLKKIIAYSSVSHMGFVTIGIFSLNIQGIEGSILLMLSHGLV 341
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + + I+ GL + MP+ + L + +G P S F
Sbjct: 342 SSALFLCIG-VLYDRYKTRVIKYYSGLIQVMPLFGVFFLFFTFANLGFPGTSSF 394
Score = 48.5 bits (114), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 102/202 (50%), Gaps = 20/202 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + +++ + AA ++F+ ++ S ML + +Y TGT
Sbjct: 135 DLLLFYIYFESVLIPMFLIVGVWGSRQRKIRAAYQFFLYTLIGSLLMLLALLNIYFQTGT 194
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+LQ I I+ + I+ L LS + K+ + PFH+W+P+ + A +++L+
Sbjct: 195 TDLQ-ILWYIQFSEISQIFLWLSFF---ASFAVKIPMIPFHIWLPEAHAEAPTAGSVILA 250
Query: 720 TTPKLSLFVIIYRL----LIKCLLPLV----INWQKILLILAIFSLIIGNVSAITQYNFK 771
I+ ++ ++ LP+ I + + L++ ++I +++ + Q + K
Sbjct: 251 G--------ILLKMGGYGFLRFSLPMFPVASIFFTPFIFTLSLVAIIYASLTTLRQIDLK 302
Query: 772 RMIAYSSIAHMGLMLFSIISIK 793
++IAYSS++HMG + I S+
Sbjct: 303 KIIAYSSVSHMGFVTIGIFSLN 324
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.144 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,027,669,999
Number of Sequences: 23463169
Number of extensions: 712418719
Number of successful extensions: 3355509
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 97979
Number of HSP's successfully gapped in prelim test: 7974
Number of HSP's that attempted gapping in prelim test: 2516100
Number of HSP's gapped (non-prelim): 362206
length of query: 1178
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1024
effective length of database: 8,745,867,341
effective search space: 8955768157184
effective search space used: 8955768157184
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 83 (36.6 bits)