BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5224
(1178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RKO|L Chain L, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|B Chain B, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 613
Score = 220 bits (560), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 160/270 (59%), Gaps = 49/270 (18%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
+++NL ++LGWE VG+ SYLLIGF+Y P A +KAF++ R+G
Sbjct: 132 LADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNE 191
Query: 47 ----------------------------------AMAKSAQFPLHTWLPDSMEGPTPASA 72
A+ KSAQ PL TWL D+M GPTP SA
Sbjct: 192 LGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSA 251
Query: 73 LIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
LIHAATMVTAG+++I R LF ++ L ++ +GA+T G ++Q DIKR++AYS
Sbjct: 252 LIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYS 311
Query: 133 TLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
T+SQ+GYM + LGV A+ +IFHLMTHAFFKALLFL++GS+I+ H Q+I MGGL K
Sbjct: 312 TMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKS 371
Query: 193 MPITCITSLIGLLSLVGAPFFS-GFYSKDK 221
+P+ + L+G +L P + GF+SKD+
Sbjct: 372 IPLVYLCFLVGGAALSALPLVTAGFFSKDE 401
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 34/311 (10%)
Query: 577 AYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYF 636
YS + +F+ ++++ +NLL +YLG E + L +LI + + AA+K F
Sbjct: 112 GYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAF 171
Query: 637 ILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCXXXXXXXXXXXXXXXF-KLG 695
++ + F+ + + ILY GTL + + + + + K
Sbjct: 172 VVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSA 231
Query: 696 ISPFHMWVPDVYQGAXXXXXXXXXXXXXXXXFVIIYR-----LLIKCLLPLVINWQKXXX 750
P W+ D G +I R L+ +L LV
Sbjct: 232 QLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLV-------G 284
Query: 751 XXXXXXXXXGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLF 810
+A+ Q + KR++AYS+++ +G M + + + D+ +F
Sbjct: 285 IVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLA-----------LGVQAWDAAIF 333
Query: 811 YIITYIFAILGAFGVIILLKNNT----CNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
+++T+ F F ++ L + + C+ + GL + P L ++ +L+
Sbjct: 334 HLMTHAF-----FKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSA 388
Query: 867 FP-PTIGFYAK 876
P T GF++K
Sbjct: 389 LPLVTAGFFSK 399
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 383 MHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFS--LPIFPDASYYFXXXXXXXXXXX 440
+ TWL DA ++I AA M+ G Y + R + P+ +
Sbjct: 235 LQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLH----LVGIVGAVT 290
Query: 441 XXXXXXXAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFI 500
A+VQ DIK+++AYS+++ +G++ L L + AI +++HA + +F+
Sbjct: 291 LLLAGFAALVQTDIKRVLAYSTMSQIGYMFLA---LGVQAWDAAIFHLMTHAFFKALLFL 347
Query: 501 SIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLP-GTSGFIGEFMIILSAV 558
+ G + + I GG+ IP + F++ A +LP T+GF + I+ A+
Sbjct: 348 ASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAM 407
Query: 559 K 559
Sbjct: 408 A 408
>pdb|4HE8|L Chain L, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HE8|F Chain F, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HEA|L Chain L, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|T Chain T, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 606
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 154/260 (59%), Gaps = 47/260 (18%)
Query: 8 LFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIGAMA------------------ 49
+F+GWE VG+AS+LLIGFWY P + KAF++NRIG +
Sbjct: 127 MFIGWEGVGLASFLLIGFWYKNPQYADSARKAFIVNRIGDLGFMLGMAILWALYGTLSIS 186
Query: 50 -----------------------------KSAQFPLHTWLPDSMEGPTPASALIHAATMV 80
KSAQ PL WLPD+M GPTP SALIHAATMV
Sbjct: 187 ELKEAMEGPLKNPDLLALAGLLLFLGAVGKSAQIPLMVWLPDAMAGPTPVSALIHAATMV 246
Query: 81 TAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYM 140
TAG+++I R S L+ + I +G +TA + L Q DIK+I+AYST+SQLGYM
Sbjct: 247 TAGVYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALSAFGQTDIKKIVAYSTISQLGYM 306
Query: 141 TVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITS 200
+ GV AY V++FH+ THAFFKALLFL++GS+I + QD+R MGGL+K++P T +
Sbjct: 307 FLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHALGGEQDVRKMGGLWKHLPQTRWHA 366
Query: 201 LIGLLSLVGAPFFSGFYSKD 220
LIG L+L G P SGF+SKD
Sbjct: 367 LIGALALGGLPLLSGFWSKD 386
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 385 TWLPDAHVEAPTEGSVILAAIMLKLGCYGLLR--FSLPIFPDASYYFXXXXXXXXXXXXX 442
WLPDA ++I AA M+ G Y + R F + PD SY
Sbjct: 224 VWLPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVLPDVSY----AIAVVGLLTAA 279
Query: 443 XXXXXAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQG-AIIQMISHALISSAMFIS 501
A Q DIKK++AYS+I+ +G+ +F+ + A+ + +HA + +F++
Sbjct: 280 YGALSAFGQTDIKKIVAYSTISQLGY----MFLAAGVGAYWVALFHVFTHAFFKALLFLA 335
Query: 502 IGFLYNQM-KTRLISNFGGIINVIPH 526
G + + + + + GG+ +P
Sbjct: 336 SGSVIHALGGEQDVRKMGGLWKHLPQ 361
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 6/204 (2%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSS-GF 645
+F+ + ++ ++ +++G E + L +LI N +++A K FI+ + GF
Sbjct: 110 LFIAMMLTLVLADSYPVMFIGWEGVGLASFLLIGFWYKNPQYADSARKAFIVNRIGDLGF 169
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINCXXXXXXXXXXXXXXXFKLGISPFHMWVPD 705
ML G++IL+ + GTL + + ++ N K P +W+PD
Sbjct: 170 ML-GMAILWALYGTLSISELKEAMEGPLKNPDLLALAGLLLFLGAVGKSAQIPLMVWLPD 228
Query: 706 VYQGAXXXXXXXXXXXXXXXXFVIIYR-LLIKCLLPLVINWQKXXXXXXXXXXXXGNVSA 764
G +I R + +LP V G +SA
Sbjct: 229 AMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVLPDV---SYAIAVVGLLTAAYGALSA 285
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFS 788
Q + K+++AYS+I+ +G M +
Sbjct: 286 FGQTDIKKIVAYSTISQLGYMFLA 309
>pdb|3RKO|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 509
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 189/384 (49%), Gaps = 13/384 (3%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFXXXXXXXXXXXXXXXXAEY--MSAFL 274
+ + WI F I L IDGLSL + LT + ++
Sbjct: 63 WQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMW 122
Query: 275 ILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWG-----GSNRSYAAIKFFLYTXXX 329
IL G +IG F A+D LF+ F+E L+P++ +I WG G R AA KFF+YT
Sbjct: 123 ILGG-VIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS 181
Query: 330 XXXXXXXXXXXXXXXNKSFNILS--WHQLSITKIE---QXXXXXXXXXXXXXXXXXXXMH 384
+ + + + +L T + + +H
Sbjct: 182 GLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLH 241
Query: 385 TWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFXXXXXXXXXXXXXXX 444
WLPDAH +APT GSV LA I+LK YGLLRFSLP+FP+AS F
Sbjct: 242 GWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYG 301
Query: 445 XXXAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGF 504
A Q DIK+LIAY+S++HMGFV + I+ ++++ QGA+IQMI+H L ++ +FI G
Sbjct: 302 AWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQ 361
Query: 505 LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCI 564
LY ++ TR + GG+ + + + F++A +PGT F+GEFMI+ + + I
Sbjct: 362 LYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVI 421
Query: 565 GVLTSTALIFSAAYSLCLSKNIIF 588
V+++ L+F++ YSL + F
Sbjct: 422 TVISTFGLVFASVYSLAMLHRAYF 445
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
Query: 55 PLHTWLPDSM-EGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFIGAITA 112
PLH WLPD+ + PT S + + TA ++ PLF ++ + I +++G I
Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGI 298
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFKALLFLS 169
F+ + Q DIKR+IAY+++S +G++ + + AY ++ ++ H A LF+
Sbjct: 299 FYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFIL 358
Query: 170 AGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
G + + H +D+R MGGL+ M SL ++ +G P
Sbjct: 359 CGQLYERI-HTRDMRMMGGLWSKMKWLPALSLFFAVATLGMP 399
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 20/202 (9%)
Query: 693 KLGISPFHMWVPDVYQGAXXXXXXXXXXXXXXXXFVIIYRLLIKCLLPLVIN----WQKX 748
K+ + P H W+PD + A Y LL + LPL N +
Sbjct: 234 KMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTA---AYGLL-RFSLPLFPNASAEFAPI 289
Query: 749 XXXXXXXXXXXGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSG 808
G A Q + KR+IAY+S++HMG F +I+I T + +
Sbjct: 290 AMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMG---FVLIAIYTGSQ--LAYQGA--- 341
Query: 809 LFYIITYIFAILGAFGVIILLKNNTCN-KTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
+I I L A G+ IL T ++ + GL + W + + F + G
Sbjct: 342 ---VIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGM 398
Query: 868 PPTIGFYAKFFIFEKIFETQKI 889
P T F +F I F+ +
Sbjct: 399 PGTGNFVGEFMILFGSFQVVPV 420
>pdb|2QFL|A Chain A, Structure Of Suhb: Inositol Monophosphatase And Extragenic
Suppressor From E. Coli
Length = 267
Score = 182 bits (463), Expect = 8e-46, Method: Composition-based stats.
Identities = 87/248 (35%), Positives = 147/248 (59%), Gaps = 1/248 (0%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
A++AARK+ +I + + + +K +FV N++KA+E +I + +YP + + +
Sbjct: 8 AVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITE 67
Query: 985 KSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTA 1044
+S L + + W+IDPLD TNF P + +SIA++ K + +V+YDP+RN+LFTA
Sbjct: 68 ESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTA 127
Query: 1045 IKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIF-QIITKCKNLRNIGT 1103
+G GA LN R+R + ++ ++ T F FK + Y I ++ +C + R G+
Sbjct: 128 TRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYATTYINIVGKLFNECADFRATGS 187
Query: 1104 SSLNLAYVASGKLDGFFEKGLKPWNIAAXXXXXXXXXXXXXNFKGEKNYLYTGDIVAGNQ 1163
++L+LAYVA+G++DGFFE GL+PW+ AA +F G NY+ TG+IVAGN
Sbjct: 188 AALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGHNYMLTGNIVAGNP 247
Query: 1164 KIFSQIIS 1171
++ +++
Sbjct: 248 RVVKAMLA 255
>pdb|3RKO|N Chain N, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|D Chain D, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 485
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 160/318 (50%), Gaps = 7/318 (2%)
Query: 586 IIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGF 645
+I LG +++ + N+L S++LG+EL+SL L L+ S EA+IKY IL +S F
Sbjct: 110 LIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSF 169
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINCXXXXXXXXXXXXXXXFKLGISPFHMWVPD 705
+L+G++++Y +G L ++ + +N FKL + PFH+W PD
Sbjct: 170 LLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPD 229
Query: 706 VYQGAXXXXXXXXXXXXXXXXFVIIYRLLIKCLLPLVINWQKXXXXXXXXXXXXGNVSAI 765
VYQGA F ++ RL + + + GN+ A+
Sbjct: 230 VYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMAL 289
Query: 766 TQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
+Q N KR++ YSSI+H+G +L ++I+++T S ++ Y+ Y+F+ LGAFGV
Sbjct: 290 SQTNIKRLLGYSSISHLGYLLVALIALQTGE------MSMEAVGVYLAGYLFSSLGAFGV 343
Query: 826 IILLKNN-TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIF 884
+ L+ + D L + GL P A +M + M SLAG P T+GF KF++
Sbjct: 344 VSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGV 403
Query: 885 ETQKIWLLLLIIMCSLIG 902
+ WL+ +++ S IG
Sbjct: 404 QAHLWWLVGAVVVGSAIG 421
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 37 LKAFLINRIGAMAKSAQFPLHTWLPDSMEG-PTPASALIHAATMVTAGIF-MITRM---S 91
L F + +G K + P H W PD +G P P S + A+ + IF ++ R+ +
Sbjct: 204 LAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIA--IFGVVMRLFLYA 261
Query: 92 PLFELSNTALSIILFIGAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYT 150
P+ + + A+ ++L I A + G L+ + Q +IKR++ YS++S LGY+ V L ++ T
Sbjct: 262 PVGD--SEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVAL-IALQT 318
Query: 151 VSIFHLMTHAFFKALLFLSAG-----SIIINMKHNQDIRNM---GGLYKYMPITCITSLI 202
+ + LF S G S++ + D ++ GL+ + PI +
Sbjct: 319 GEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTV 378
Query: 203 GLLSLVGAPFFSGFYSK 219
+LSL G P GF K
Sbjct: 379 MMLSLAGIPMTLGFIGK 395
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 7/182 (3%)
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGL-LRFSLPIFPDASYYFXXXXXXXXXXXXX 442
H W PD + AP S LA K+ +G+ +R L S
Sbjct: 224 HLWTPDVYQGAPAPVSTFLATAS-KIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASII 282
Query: 443 XXXXXAMVQIDIKKLIAYSSIAHMGFVTLGIFMLT--KISIQGAIIQMISHALISSAMFI 500
A+ Q +IK+L+ YSSI+H+G++ + + L ++S++ + + + S F
Sbjct: 283 FGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFG 342
Query: 501 SIGFL---YNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+ + Y + ++ G+ P + + L+ +P T GFIG+F ++
Sbjct: 343 VVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVG 402
Query: 558 VK 559
V+
Sbjct: 403 VQ 404
>pdb|3LUZ|A Chain A, Crystal Structure Of Extragenic Suppressor Protein Suhb From
Bartonella Henselae, Via Combined Iodide Sad Molecular
Replacement
pdb|3LUZ|B Chain B, Crystal Structure Of Extragenic Suppressor Protein Suhb From
Bartonella Henselae, Via Combined Iodide Sad Molecular
Replacement
pdb|3LV0|A Chain A, Crystal Structure Of Extragenic Suppressor Protein Suhb From
Bartonella Henselae, Native
pdb|3LV0|B Chain B, Crystal Structure Of Extragenic Suppressor Protein Suhb From
Bartonella Henselae, Native
Length = 267
Score = 137 bits (346), Expect = 3e-32, Method: Composition-based stats.
Identities = 78/241 (32%), Positives = 138/241 (57%), Gaps = 1/241 (0%)
Query: 926 IKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIKK 985
++AA K+ + R E++NL+ K ++V ++ +EKII L P + FL+++
Sbjct: 15 VQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGFLMEE 74
Query: 986 SNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAI 1045
S + ++++ +I+DPLD TNF H P + +SIAL+ + +I VIY+PI ++LFTA
Sbjct: 75 SEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAE 134
Query: 1046 KGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEY-AKIFQIITKCKNLRNIGTS 1104
+G GA+ N++R RV+ R ++ D +I T Y ++ ++ + +R GT+
Sbjct: 135 RGSGAFFNDRRCRVSARRRLEDCVIATGMPHLGRPGHGTYLIELRNVMAEVSGIRRFGTA 194
Query: 1105 SLNLAYVASGKLDGFFEKGLKPWNIAAXXXXXXXXXXXXXNFKGEKNYLYTGDIVAGNQK 1164
+L+LAYVA+G+ DGF+E L+ W++AA + +G + +I+AGN+
Sbjct: 195 ALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNIIAGNEH 254
Query: 1165 I 1165
I
Sbjct: 255 I 255
>pdb|4HE8|N Chain N, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HE8|I Chain I, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HEA|N Chain N, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|V Chain V, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 427
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 34/314 (10%)
Query: 590 LGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYG 649
LG ++ S +LL + + LE +SL L L ++ EAA+KYF+LG L++ F LYG
Sbjct: 93 LGMHLLASTRHLLLMLVALEALSLPLYALATWRRGQ--GLEAALKYFLLGALAAAFFLYG 150
Query: 650 ISILYGITGTLELQSIFNVIKLNNINCXXXXXXXXXXXXXXXFKLGISPFHMWVPDVYQG 709
++ YG TG+L L + FK ++PFH W PDVYQG
Sbjct: 151 AALFYGATGSLVLGA--------PGEGPLYALALGLLLVGLGFKAALAPFHFWTPDVYQG 202
Query: 710 AXXXXXXXXXXXXXXXXFVIIYRLLIKCLLPLVINWQKXXXXXXXXXXXXGNVSAITQYN 769
+ F + R V + GN++A+ Q
Sbjct: 203 SPTPVVLFMATSVKAAAFAALLR---------VAAPPEALALLVALSVVVGNLAALAQKE 253
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
KR++AYSSIAH G M ++ + + + FY++TY+ A AF V+
Sbjct: 254 AKRLLAYSSIAHAGYMALALYT-----------GNAQALGFYLLTYVLATGLAFAVL--- 299
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ L+ GL++++P L ++ M SL G PP GF+ K+ F +
Sbjct: 300 -SQISPDRVPLEALRGLYRKDPLLGLAFLVAMLSLLGLPPLAGFWGKYLAFAEAARAGAW 358
Query: 890 WLLLLIIMCSLIGA 903
+L+L ++ S + A
Sbjct: 359 GVLVLALVTSAVSA 372
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGA 109
K+A P H W PD +G +P ++ AT V A F + L ++ ++ L + A
Sbjct: 186 KAALAPFHFWTPDVYQG-SPTPVVLFMATSVKAAAF-----AALLRVAAPPEALALLV-A 238
Query: 110 ITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLS 169
++ L + Q + KR++AYS+++ GYM + L F+L+T+ L F
Sbjct: 239 LSVVVGNLAALAQKEAKRLLAYSSIAHAGYMALALYTGNAQALGFYLLTYVLATGLAF-- 296
Query: 170 AGSIIINMKHNQ-DIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+++ + ++ + + GLY+ P+ + L+ +LSL+G P +GF+ K
Sbjct: 297 --AVLSQISPDRVPLEALRGLYRKDPLLGLAFLVAMLSLLGLPPLAGFWGK 345
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 18/171 (10%)
Query: 384 HTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFXXXXXXXXXXXXXX 443
H W PD + +PT + +A + LLR + P P+A
Sbjct: 193 HFWTPDVYQGSPTPVVLFMATSVKAAAFAALLRVAAP--PEA-------LALLVALSVVV 243
Query: 444 XXXXAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG 503
A+ Q + K+L+AYSSIAH G++ L ++ + Q ++++ L + F +
Sbjct: 244 GNLAALAQKEAKRLLAYSSIAHAGYMALALY---TGNAQALGFYLLTYVLATGLAFAVL- 299
Query: 504 FLYNQMKTRLI--SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFM 552
+Q+ + G+ P + F++ L+ LP +GF G+++
Sbjct: 300 ---SQISPDRVPLEALRGLYRKDPLLGLAFLVAMLSLLGLPPLAGFWGKYL 347
>pdb|1IMA|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMA|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMC|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMC|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMD|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IMD|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IME|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IME|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMF|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|4AS4|A Chain A, Structure Of Human Inositol Monophosphatase 1
pdb|4AS4|B Chain B, Structure Of Human Inositol Monophosphatase 1
Length = 277
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 955 NFVFNINKASEKIITKILFNTYPSYAFLIKKS---NYLTNFENENIWIIDPLDNITNFSH 1011
+ V ++ EK++ + YPS++F+ ++S + + WIIDP+D TNF H
Sbjct: 41 DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVH 100
Query: 1012 NFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNKRNKINDALIG 1071
FP +SI K+I V+Y + ++TA KG GA+ N ++++V+++ I +L+
Sbjct: 101 RFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLLV 160
Query: 1072 TDFSFKNNINS-----EEYAKIFQIITKCKNLRNIGTSSLNLAYVASGKLDGFFEKGLKP 1126
T+ + K+F I +R++GT+++N+ VA+G D ++E G+
Sbjct: 161 TELGSSRTPETVRMVLSNMEKLFCI--PVHGIRSVGTAAVNMCLVATGGADAYYEMGIHC 218
Query: 1127 WNIAAXXXXXXXXXXXXXNFKGEKNYLYTGDIVAGNQKIFSQIIS 1171
W++A + G L + ++A N +I ++ I+
Sbjct: 219 WDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRVIAANNRILAERIA 263
>pdb|2HHM|A Chain A, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|2HHM|B Chain B, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|1AWB|A Chain A, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
pdb|1AWB|B Chain B, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
Length = 276
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 955 NFVFNINKASEKIITKILFNTYPSYAFLIKKS---NYLTNFENENIWIIDPLDNITNFSH 1011
+ V ++ EK++ + YPS++F+ ++S + + WIIDP+D TNF H
Sbjct: 40 DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVH 99
Query: 1012 NFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNKRNKINDALIG 1071
FP +SI K+I V+Y + ++TA KG GA+ N ++++V+++ I +L+
Sbjct: 100 RFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLLV 159
Query: 1072 TDFSFKNNINS-----EEYAKIFQIITKCKNLRNIGTSSLNLAYVASGKLDGFFEKGLKP 1126
T+ + K+F I +R++GT+++N+ VA+G D ++E G+
Sbjct: 160 TELGSSRTPETVRMVLSNMEKLFCI--PVHGIRSVGTAAVNMCLVATGGADAYYEMGIHC 217
Query: 1127 WNIAAXXXXXXXXXXXXXNFKGEKNYLYTGDIVAGNQKIFSQIIS 1171
W++A + G L + ++A N +I ++ I+
Sbjct: 218 WDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRVIAANNRILAERIA 262
>pdb|4HE8|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HE8|G Chain G, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HEA|M Chain M, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|U Chain U, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 469
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 123/301 (40%), Gaps = 5/301 (1%)
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTXXXXXXXXXXXXXXXXX 343
F A D ++FY+FFEA LIP +++ +GG R+ A F L+T
Sbjct: 110 FAARDLLVFYVFFEAALIPALLMLYLYGGEGRTRALYTFVLFTLVGSLPMLAAVLGARLL 169
Query: 344 XNKSFNILSWHQLSITKIEQXXXX---XXXXXXXXXXXXXXXMHTWLPDAHVEAPTEGSV 400
+L L +++ +H WLP H E G
Sbjct: 170 SGSPTFLL--EDLLAHPLQEEAAFWVFLGFALAFAIKTPLFPLHAWLPPFHQENHPSGLA 227
Query: 401 ILAAIMLKLGCYGLLRFSLPIFPDASYYFXXXXXXXXXXXXXXXXXXAMVQIDIKKLIAY 460
+ K+G + RF++P+ P+ A D K L+AY
Sbjct: 228 DALGTLYKVGVFAFFRFAIPLAPEGFAQAQGLLLFLAALSALYGAWVAFAAKDFKTLLAY 287
Query: 461 SSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGI 520
+ ++HMG LG+F T G + + + + + +F+ G LY + T I + G+
Sbjct: 288 AGLSHMGVAALGVFSGTPEGAMGGLYLLAASGVYTGGLFLLAGRLYERTGTLEIGRYRGL 347
Query: 521 INVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSL 580
P + +I LA LPG SGF GEF+ +L A K + + L ++I SAAY+L
Sbjct: 348 AQSAPGLAALALILFLAMVGLPGLSGFPGEFLTLLGAYKASPWLAALAFLSVIASAAYAL 407
Query: 581 C 581
Sbjct: 408 T 408
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 29 KPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMIT 88
PL A FL + K+ FPLH WLP + P+ T+ G+F
Sbjct: 183 HPLQEEAAFWVFLGFALAFAIKTPLFPLHAWLPPFHQENHPSGLADALGTLYKVGVFAFF 242
Query: 89 RMS-PLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-- 144
R + PL E A ++LF+ A++A + + D K ++AY+ LS +G +G+
Sbjct: 243 RFAIPLAPEGFAQAQGLLLFLAALSALYGAWVAFAAKDFKTLLAYAGLSHMGVAALGVFS 302
Query: 145 GVSAYTVSIFHLM-THAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIG 203
G + +L+ + LFL AG + +I GL + P +LI
Sbjct: 303 GTPEGAMGGLYLLAASGVYTGGLFLLAGR-LYERTGTLEIGRYRGLAQSAPGLAALALIL 361
Query: 204 LLSLVGAPFFSGF 216
L++VG P SGF
Sbjct: 362 FLAMVGLPGLSGF 374
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 30/234 (12%)
Query: 698 PFHMWVPDVYQGAXXXXXXXXXXXXXXXXFVIIYRLLIKCLLPLVINWQKXXXXXXXXXX 757
P H W+P +Q +R I Q
Sbjct: 209 PLHAWLPPFHQENHPSGLADALGTLYKVGVFAFFRFAIPLAPEGFAQAQGLLLFLAALSA 268
Query: 758 XXGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIF 817
G A +FK ++AY+ ++HMG+ + S GL Y+
Sbjct: 269 LYGAWVAFAAKDFKTLLAYAGLSHMGVAALGVFSGTP--------EGAMGGL-----YLL 315
Query: 818 AILGAF-GVIILLKNNTCNKTDELDI--FIGLHQRNPWCALIMMIFMFSLAGFPPTIGFY 874
A G + G + LL +T L+I + GL Q P A + +I ++ G P GF
Sbjct: 316 AASGVYTGGLFLLAGRLYERTGTLEIGRYRGLAQSAPGLAALALILFLAMVGLPGLSGFP 375
Query: 875 AKFFIFEKIFETQKIWLLLLIIMCSLIGA-------------KGGRIIKDCPGV 915
+F ++ WL L + + A +GG +KD G
Sbjct: 376 GEFLTLLGAYKASP-WLAALAFLSVIASAAYALTAFQKTFWEEGGSGVKDLAGA 428
>pdb|2PCR|A Chain A, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|B Chain B, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|C Chain C, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|D Chain D, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
Length = 264
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 7/237 (2%)
Query: 937 NRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIKKSNYLTNFENEN 996
N G ++ EN+ EEK ++FV ++K SE+ I +++ +P + ++ + +E
Sbjct: 25 NFGKVKKENI--EEKGEKDFVSYVDKTSEERIKEVILKFFPDHE-VVGEEXGAEGSGSEY 81
Query: 997 IWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKR 1056
W IDPLD N+ + FP + +S+ L + ++ +Y P + L+ KG GAY+N KR
Sbjct: 82 RWFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIVGAVYLPYFDKLYWGAKGLGAYVNGKR 141
Query: 1057 IRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQ-IITKCKNLRNIGTSSLNLAYVASGK 1115
I+V + A + F ++ + Y IF+ + + + R G ++++L VA G
Sbjct: 142 IKVKDNESLKHAGVVYGFPSRSRRDISIYLNIFKDVFYEVGSXRRPGAAAVDLCXVAEGI 201
Query: 1116 LDGFFEKGLKPWNIAAXXXXXXXXXXXXXNFKGEKNYLYTGDIVAGNQKIFSQIISL 1172
DG E KPW+I A GE DI+AGN+ + I+ +
Sbjct: 202 FDGXXEFEXKPWDITA-GLVILKEAGGVYTLVGEP--FGVSDIIAGNKALHDFILQV 255
>pdb|4AS5|A Chain A, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|B Chain B, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|C Chain C, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|D Chain D, Structure Of Mouse Inositol Monophosphatase 1
Length = 277
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 126/259 (48%), Gaps = 19/259 (7%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
A+ AR++ +I R +L+ E + + V ++ EK++ + YP ++F+ +
Sbjct: 12 AVILARQAGEMI-REALKNEMDVMIKSSPADLVTVTDQKVEKMLMSSIKEKYPCHSFIGE 70
Query: 985 KS---NYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDL 1041
+S T F + W+IDP+D TNF H FP +SI K++ ++Y + + +
Sbjct: 71 ESVAAGEKTVFTEQPTWVIDPIDGTTNFVHRFPFVAVSIGFLVNKEMEFGIVYSCVEDKM 130
Query: 1042 FTAIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITK-----CK 1096
+T KG GA+ N ++++V+++ I +L+ T+ + S + +I+ C
Sbjct: 131 YTGRKGKGAFCNGQKLQVSQQEDITKSLLVTE------LGSSRKPETLRIVLSNMEKLCS 184
Query: 1097 ----NLRNIGTSSLNLAYVASGKLDGFFEKGLKPWNIAAXXXXXXXXXXXXXNFKGEKNY 1152
+R++GT+++N+ VA+G D ++E G+ W++A + G
Sbjct: 185 IPIHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDMAGAGIIVTEAGGVLMDVTGGPFD 244
Query: 1153 LYTGDIVAGNQKIFSQIIS 1171
L + I+A N ++ I+
Sbjct: 245 LMSRRIIAANSITLAKRIA 263
>pdb|2BJI|A Chain A, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
pdb|2BJI|B Chain B, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
Length = 277
Score = 94.4 bits (233), Expect = 4e-19, Method: Composition-based stats.
Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 10/225 (4%)
Query: 955 NFVFNINKASEKIITKILFNTYPSYAFLIKKS---NYLTNFENENIWIIDPLDNITNFSH 1011
+ V ++ EK++ + YPS++F+ ++S + + WIIDP+D TNF H
Sbjct: 41 DLVTATDQKVEKMLITSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVH 100
Query: 1012 NFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNKRNKINDALIG 1071
FP +SI K++ ++Y + + ++T KG GA+ N ++++V+ + I +L+
Sbjct: 101 GFPFVAVSIGFVVNKKMEFGIVYSCLEDKMYTGRKGKGAFCNGQKLQVSHQEDITKSLLV 160
Query: 1072 TDFSFKNNINSEEYAKIFQIITK-----CKNLRNIGTSSLNLAYVASGKLDGFFEKGLKP 1126
T+ ++ E I I + +R +GT++LN+ VA+G D ++E G+
Sbjct: 161 TELG--SSRTPETVRIILSNIERLLCLPIHGIRGVGTAALNMCLVAAGAADAYYEMGIHC 218
Query: 1127 WNIAAXXXXXXXXXXXXXNFKGEKNYLYTGDIVAGNQKIFSQIIS 1171
W++A + G L + ++A + K ++ I+
Sbjct: 219 WDVAGAGIIVTEAGGVLLDVTGGPFDLMSRRVIASSNKTLAERIA 263
>pdb|2P3N|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3N|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3N|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3N|D Chain D, Thermotoga Maritima Impase Tm1415
pdb|2P3V|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3V|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3V|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3V|D Chain D, Thermotoga Maritima Impase Tm1415
Length = 256
Score = 94.0 bits (232), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 950 EKK--YENFVFNINKASEKIITKILFNTYPSYAFLIKKSNYLTNFENENIWIIDPLDNIT 1007
EKK +++ V I++ ++++I + +P + ++ + + + +WIIDP+D
Sbjct: 29 EKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFE---KGDRLWIIDPIDGTI 85
Query: 1008 NFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNKRNKIND 1067
NF H P + IS+A + ++ V++ P N+ A +G GA+ N +RIRV++ + +
Sbjct: 86 NFVHGLPNFSISLAYVENGEVKLGVVHAPALNETLYAEEGSGAFFNGERIRVSENASLEE 145
Query: 1068 ALIGT----DFSFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVASGKLDGFFEKG 1123
+ T DF+ K I ++ + + +R +G+++LN AYV +G++D F
Sbjct: 146 CVGSTGSYVDFTGKF---------IERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWR 196
Query: 1124 LKPWNIAAXXXXXXXXXXXXXNFKGE------KNYLYTGDIV 1159
+ PW+IAA +F G+ KN++++ ++
Sbjct: 197 INPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSNGLI 238
>pdb|2CZH|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZH|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZI|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Calcium And Phosphate Ions
pdb|2CZK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Trigonal Form)
pdb|2DDK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
pdb|2DDK|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
Length = 299
Score = 93.6 bits (231), Expect = 5e-19, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 13/216 (6%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
A++ A ++ II R +L E + + V + E +I L +PS+ F+ +
Sbjct: 34 AVQLALRAGQII-RKALTEEKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAE 92
Query: 985 K---SNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDL 1041
+ S + WIIDP+D NF H FP +SI ++++ VIY L
Sbjct: 93 EAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERL 152
Query: 1042 FTAIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIF------QIITKC 1095
+T +G GA+ N +R+RV+ ++ AL+ T+ K + + K+F + K
Sbjct: 153 YTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPAT---LKLFLSNMERLLHAKA 209
Query: 1096 KNLRNIGTSSLNLAYVASGKLDGFFEKGLKPWNIAA 1131
+R IG+S+L L ++ASG D +++ GL W++AA
Sbjct: 210 HGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAA 245
>pdb|2FVZ|A Chain A, Human Inositol Monophosphosphatase 2
pdb|2FVZ|B Chain B, Human Inositol Monophosphosphatase 2
pdb|2FVZ|C Chain C, Human Inositol Monophosphosphatase 2
pdb|2FVZ|D Chain D, Human Inositol Monophosphosphatase 2
Length = 273
Score = 93.6 bits (231), Expect = 5e-19, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 13/216 (6%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
A++ A ++ II R +L E + + V + E +I L +PS+ F+ +
Sbjct: 8 AVQLALRAGQII-RKALTEEKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAE 66
Query: 985 K---SNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDL 1041
+ S + WIIDP+D NF H FP +SI ++++ VIY L
Sbjct: 67 EAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERL 126
Query: 1042 FTAIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIF------QIITKC 1095
+T +G GA+ N +R+RV+ ++ AL+ T+ K + + K+F + K
Sbjct: 127 YTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPAT---LKLFLSNMERLLHAKA 183
Query: 1096 KNLRNIGTSSLNLAYVASGKLDGFFEKGLKPWNIAA 1131
+R IG+S+L L ++ASG D +++ GL W++AA
Sbjct: 184 HGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAA 219
>pdb|3T0J|A Chain A, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|B Chain B, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|C Chain C, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|D Chain D, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
Length = 283
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 7/230 (3%)
Query: 944 ENLRFEEKKYEN-FVFNINKASEKIITKILFNTYPSYAFLIKKSN-YLTNFENENIWIID 1001
+NL E K N V N++KA+E I + TYP++ L ++ + + + +W++D
Sbjct: 32 QNLTIETKSNPNDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHGHDIDTSKGTVWVVD 91
Query: 1002 PLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNK 1061
P+D NF H + ISI + + +YD + + L+ A G GAY + ++
Sbjct: 92 PIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVLYHAKVGEGAYRGSQPLKPLN 151
Query: 1062 RNKINDALIGTDFSFKNNINSEEYAKIF-QIITKCKNLRNIGTSSLNLAYVASGKLDGFF 1120
+ + ++IG + N + +IF +I+ ++ R G+++L + VA+G L+ +
Sbjct: 152 DSNLRQSIIGIN---PNWLTKPILGEIFKEIVNDSRSARAYGSAALEIVSVATGNLEAYM 208
Query: 1121 EKGLKPWNIAAXXXXXXXXXXXXXNFKGEKNYLY-TGDIVAGNQKIFSQI 1169
L+PW+ A N GE + I+ GN+ + +I
Sbjct: 209 TPRLQPWDFAGGLVILYEVNGQASNLLGEPLTISGPNSILVGNRGLHQEI 258
>pdb|1XI6|A Chain A, Extragenic Suppressor From Pyrococcus Furiosus Pfu-1862794-
001
Length = 262
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 993 ENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYL 1052
E+E I+DPLD NF P + +S+A+ +K + +++IY+P+ F I G GA+L
Sbjct: 84 ESEYTVIVDPLDGSYNFIAGIPFFALSLAVFKKDKPIYAIIYEPMTERFFEGIPGEGAFL 143
Query: 1053 NEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVA 1112
N KRI+V K K +I+ K +I+ K R +G +L LAY+A
Sbjct: 144 NGKRIKVRKTP-----------DEKPSISFYSRGKGHEIVKHVKRTRTLGAIALELAYLA 192
Query: 1113 SGKLDGFFE--KGLKPWNIAA 1131
G LDG + K ++P +IAA
Sbjct: 193 MGALDGVVDVRKYVRPTDIAA 213
>pdb|2Q74|A Chain A, Mycobacterium Tuberculosis Suhb
pdb|2Q74|B Chain B, Mycobacterium Tuberculosis Suhb
pdb|2Q74|C Chain C, Mycobacterium Tuberculosis Suhb
Length = 299
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 998 WIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKR- 1056
W++DP+D NF + P Y +SI + + D +++A G GA+L ++R
Sbjct: 101 WVLDPIDGTVNFVYGIPAYAVSIGAQVGGITVAGAVADVAARTVYSAATGLGAHLTDERG 160
Query: 1057 ---IRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVAS 1113
+R ++++ AL+GT F + ++ + ++ +++R IG+++L+L VA+
Sbjct: 161 RHVLRCTGVDELSMALLGTGFGYSVRCREKQAELLAHVVPLVRDVRRIGSAALDLCMVAA 220
Query: 1114 GKLDGFFEKGLKPWN 1128
G+LD ++E G++ W+
Sbjct: 221 GRLDAYYEHGVQVWD 235
>pdb|1VDW|A Chain A, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
pdb|1VDW|B Chain B, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
Length = 254
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 999 IIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIR 1058
++DPLD NF + P + +S+A+ +K ++ IY+PI L+ I G G+YLN ++I+
Sbjct: 82 VVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYEGIPGKGSYLNGEKIK 141
Query: 1059 VNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVASGKLDG 1118
V + + K +I+ K +II K K R +G +L LAY+A G LD
Sbjct: 142 VR------------ELAEKPSISFYTKGKGTKIIDKVKRTRTLGAIALELAYLARGALDA 189
Query: 1119 FFE--KGLKPWNIAA 1131
+ L+P +IAA
Sbjct: 190 VVDIRNYLRPTDIAA 204
>pdb|3RYD|A Chain A, Crystal Strucutre Of Ca Bound Impase Family Protein From
Staphylococcus Aureus
pdb|3RYD|C Chain C, Crystal Strucutre Of Ca Bound Impase Family Protein From
Staphylococcus Aureus
Length = 273
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 9/231 (3%)
Query: 949 EEKKYE-NFVFNINKASEKIITKILFNTYPSYAFLIK-KSNYLTNFENENIWIIDPLDNI 1006
E K++ + V N++K ++ + L +P + L + KSN + E ++WI+DP+D
Sbjct: 42 ETKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLAEEKSNAMITNEINHLWIMDPIDGT 101
Query: 1007 TNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNKRNKIN 1066
N YCI +A + + S +YD L+ AI+G GA+ N ++ K+
Sbjct: 102 ANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEEPPSLKLE 161
Query: 1067 DALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVASGKLDGFFEKGLKP 1126
DA+I + N + + + R +G L+ VA G+ KP
Sbjct: 162 DAIISFNAQVMN------LDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKP 215
Query: 1127 WNIAAXXXXXXXXXXXXXNFKGEK-NYLYTGDIVAGNQKIFSQIISLINLN 1176
W+IAA G+ ++L + N+ ++ ++N N
Sbjct: 216 WDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKILNAN 266
>pdb|3QMF|A Chain A, Crystal Strucuture Of An Inositol Monophosphatase Family
Protein (Sas2203) From Staphylococcus Aureus Mssa476
pdb|3QMF|B Chain B, Crystal Strucuture Of An Inositol Monophosphatase Family
Protein (Sas2203) From Staphylococcus Aureus Mssa476
Length = 273
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 9/231 (3%)
Query: 949 EEKKYE-NFVFNINKASEKIITKILFNTYPSYAFLIK-KSNYLTNFENENIWIIDPLDNI 1006
E K++ + V N++K ++ + L +P + L + KSN + E ++WI+DP+D
Sbjct: 42 ETKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLAEEKSNAMITNEINHLWIMDPIDGT 101
Query: 1007 TNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNKRNKIN 1066
N YCI +A + + S +YD L+ AI+G GA+ N ++ K+
Sbjct: 102 ANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEEPPSLKLE 161
Query: 1067 DALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVASGKLDGFFEKGLKP 1126
DA+I + N + + + R +G L+ VA G+ KP
Sbjct: 162 DAIISFNAQVMN------LDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKP 215
Query: 1127 WNIAAXXXXXXXXXXXXXNFKGEK-NYLYTGDIVAGNQKIFSQIISLINLN 1176
W+IAA G+ ++L + N+ ++ ++N N
Sbjct: 216 WDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKILNAN 266
>pdb|3B8B|A Chain A, Crystal Structure Of Cysq From Bacteroides Thetaiotaomicron,
A Bacterial Member Of The Inositol Monophosphatase Family
Length = 292
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 915 VGSPGIYIVEAIKAARKSALIINRGSLEL-ENLR--FE-EKKYENFVFNI--NKASEKII 968
+G+ +Y AA +AL L + E+ + FE E+K +N I KA E I+
Sbjct: 13 LGTENLYFQSNAXAAIDAALKAGEKILSIYEDPKSDFEIERKADNSPLTIADRKAHEAIV 72
Query: 969 TKILFNTYPSYAFLIKKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQI 1028
+ +P + K +Y + +WI+DPLD F ++ ++IAL Q
Sbjct: 73 AILNETPFPVLSEEGKHXDYAVRRGWDTLWIVDPLDGTKEFIKRNGEFTVNIALVQNAVP 132
Query: 1029 THSVIYDPIRNDLFTAIKGCGAYLN-------------EKRIRVNKRNKINDA---LIGT 1072
VIY P++ +L+ A++G GAY ++ I ++R + DA I
Sbjct: 133 VXGVIYVPVKKELYFAVEGTGAYKXSGIVGLEDEGVTLQQXIEKSERXPLADARDHFIAV 192
Query: 1073 DFSFKNNINSEEYAKIFQIITKCKNLRNIGT-SSLNLAYVASGKLD 1117
+ ++++ E I + K N+ I + SS+ + VA GK D
Sbjct: 193 --ASRSHLTPETETYIADLKKKHGNVELISSGSSIKICLVAEGKAD 236
>pdb|1DK4|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase
pdb|1DK4|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase
pdb|1G0H|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0H|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0I|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0I|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
Length = 252
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 986 SNYLTNFENENIW--IIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFT 1043
S L +N + W +IDP+D NF + P + + + + + + Y+ + +
Sbjct: 64 SEELGVIDNSSEWTVVIDPIDGSFNFINGIPFFAFCFGVFKNNEPYYGLTYEFLTKSFYE 123
Query: 1044 AIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGT 1103
A KG GAYLN ++I+V N N I + I+ E ++ K K +R G
Sbjct: 124 AYKGKGAYLNGRKIKVKDFNPNN---IVISYYPSKKIDLE------KLRNKVKRVRIFGA 174
Query: 1104 SSLNLAYVASGKLDGFFE 1121
L + YVA G LD F+
Sbjct: 175 FGLEMCYVAKGTLDAVFD 192
>pdb|1LBV|A Chain A, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBV|B Chain B, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|A Chain A, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|B Chain B, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBX|A Chain A, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBX|B Chain B, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBY|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate, And
Phosphate Ion
pdb|1LBY|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate, And
Phosphate Ion
pdb|1LBZ|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
pdb|1LBZ|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
Length = 252
Score = 38.5 bits (88), Expect = 0.025, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 33/189 (17%)
Query: 1000 IDPLDNITNFSHNFPQYCISIALKQKKQITHSV---IYDPIRNDLFTAIKGCGAYLNEKR 1056
+DPLD N + P Y +S+ ++ + +Y+ D + A GAY N +R
Sbjct: 81 LDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFGYVYNLATGDEYYA-DSSGAYRNGER 139
Query: 1057 IRVNKRNKI--NDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVASG 1114
I V+ ++ N + D F K +R G+++ L + A G
Sbjct: 140 IEVSDAEELYCNAIIYYPDRKF-----------------PFKRMRIFGSAATELCFFADG 182
Query: 1115 KLDGFFE----KGLKPWNIAAXXXXXXXXXXXXXNFKGEK------NYLYTGDIVAGNQK 1164
D F + K L+ ++ AA GE + +IVA N+K
Sbjct: 183 SFDCFLDIRPGKMLRIYDAAAGVFIAEKAGGKVTELDGESLGNKKFDMQERLNIVAANEK 242
Query: 1165 IFSQIISLI 1173
+ +++ LI
Sbjct: 243 LHPKLLELI 251
>pdb|2NOO|A Chain A, Crystal Structure Of Mutant Nika
Length = 502
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 952 KYENFVFNINKASEK-IITKILFNTYP---SYAFLIKKSNYLTNFENENIWIIDPLDNIT 1007
+Y+ FV N N EK I KI FN P + A + + + NE + PLD
Sbjct: 174 QYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLL---PLDTFA 230
Query: 1008 NFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIR------VNK 1061
FS N P Y H+ + PI + A+ A NE +R VNK
Sbjct: 231 RFSQN-PAY-------------HTQLSQPIET-VMLALNTAKAPTNELAVREALNYAVNK 275
Query: 1062 RNKINDALIGT 1072
++ I++AL GT
Sbjct: 276 KSLIDNALYGT 286
>pdb|3QIM|A Chain A, Histidine 416 Of The Periplamsic Binding Protein Nika Is
Essential For Nickel Uptake In Escherichia Coli
pdb|3QIM|B Chain B, Histidine 416 Of The Periplamsic Binding Protein Nika Is
Essential For Nickel Uptake In Escherichia Coli
Length = 502
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 952 KYENFVFNINKASEK-IITKILFNTYP---SYAFLIKKSNYLTNFENENIWIIDPLDNIT 1007
+Y+ FV N N EK I KI FN P + A + + + NE + PLD
Sbjct: 174 QYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLL---PLDTFA 230
Query: 1008 NFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIR------VNK 1061
FS N P Y H+ + PI + A+ A NE +R VNK
Sbjct: 231 RFSQN-PAY-------------HTQLSQPIET-VMLALNTAKAPTNELAVREALNYAVNK 275
Query: 1062 RNKINDALIGT 1072
++ I++AL GT
Sbjct: 276 KSLIDNALYGT 286
>pdb|3MZB|A Chain A, X-Ray Structure Of Nika In Complex With The Doubly
Hydroxylated Iron Complex, 1-O2
pdb|3MZB|B Chain B, X-Ray Structure Of Nika In Complex With The Doubly
Hydroxylated Iron Complex, 1-O2
Length = 501
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 952 KYENFVFNINKASEK-IITKILFNTYP---SYAFLIKKSNYLTNFENENIWIIDPLDNIT 1007
+Y+ FV N N EK I KI FN P + A + + + NE + PLD
Sbjct: 174 QYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLL---PLDTFA 230
Query: 1008 NFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIR------VNK 1061
FS N P Y H+ + PI + A+ A NE +R VNK
Sbjct: 231 RFSQN-PAY-------------HTQLSQPIET-VMLALNTAKAPTNELAVREALNYAVNK 275
Query: 1062 RNKINDALIGT 1072
++ I++AL GT
Sbjct: 276 KSLIDNALYGT 286
>pdb|1ZLQ|A Chain A, Crystallographic And Spectroscopic Evidence For High
Affinity Binding Of Fe Edta (h2o)- To The Periplasmic
Nickel Transporter Nika
pdb|1ZLQ|B Chain B, Crystallographic And Spectroscopic Evidence For High
Affinity Binding Of Fe Edta (h2o)- To The Periplasmic
Nickel Transporter Nika
pdb|3DP8|A Chain A, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Nickel Butane-1,2,4- Tricarboxylate Form)
pdb|3DP8|B Chain B, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Nickel Butane-1,2,4- Tricarboxylate Form)
pdb|3DP8|C Chain C, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Nickel Butane-1,2,4- Tricarboxylate Form)
pdb|3E3K|A Chain A, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Butane-1,2,4-Tricarboxylate Without Nickel Form)
pdb|3E3K|B Chain B, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Butane-1,2,4-Tricarboxylate Without Nickel Form)
pdb|3E3K|C Chain C, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Butane-1,2,4-Tricarboxylate Without Nickel Form)
pdb|3MVW|A Chain A, X-Ray Structure Of A "nika+iron Complex" Hybrid, Nika1
pdb|3MVW|B Chain B, X-Ray Structure Of A "nika+iron Complex" Hybrid, Nika1
pdb|3MVX|A Chain A, X-Ray Structure Of The Reduced Nika1 HYBRID, NIKA1-Red
pdb|3MVX|B Chain B, X-Ray Structure Of The Reduced Nika1 HYBRID, NIKA1-Red
pdb|3MVY|A Chain A, X-Ray Structure Of The Diatomic Oxo-Intermediate Nika1-Int',
Prior Hydroxylation
pdb|3MVY|B Chain B, X-Ray Structure Of The Diatomic Oxo-Intermediate Nika1-Int',
Prior Hydroxylation
pdb|3MVZ|A Chain A, X-Ray Structure Of The (Hydro)peroxo Intermediate
Nika1-Int", After Monohydroxylation Of The Iron Complex
pdb|3MVZ|B Chain B, X-Ray Structure Of The (Hydro)peroxo Intermediate
Nika1-Int", After Monohydroxylation Of The Iron Complex
pdb|3MW0|A Chain A, X-Ray Structure Of The Doubly Hydroxylated Iron Complex-Nika
Species, Nika1O2
pdb|3MW0|B Chain B, X-Ray Structure Of The Doubly Hydroxylated Iron Complex-Nika
Species, Nika1O2
pdb|3MZ9|A Chain A, X-Ray Structure Of Nika In Complex With Hbed
pdb|3MZ9|B Chain B, X-Ray Structure Of Nika In Complex With Hbed
pdb|4DCX|A Chain A, X-Ray Structure Of Nika In Complex With
Fe(1r,2r)-N,N'-Bis(2-
Pyridylmethyl)-N,N'-Dicarboxymethyl-1,
2-Cyclohexanediamine
pdb|4DCX|B Chain B, X-Ray Structure Of Nika In Complex With
Fe(1r,2r)-N,N'-Bis(2-
Pyridylmethyl)-N,N'-Dicarboxymethyl-1,
2-Cyclohexanediamine
pdb|4DCY|A Chain A, X-Ray Structure Of Nika In Complex With
Fe(1s,2s)-N,N-Kappa-Bis(2-
Pyridylmethyl)-N-Carboxymethyl-N-Kappa-Methyl-1,
2-Cyclohexanediamine
pdb|4DCY|B Chain B, X-Ray Structure Of Nika In Complex With
Fe(1s,2s)-N,N-Kappa-Bis(2-
Pyridylmethyl)-N-Carboxymethyl-N-Kappa-Methyl-1,
2-Cyclohexanediamine
pdb|4I8C|A Chain A, X-ray Structure Of Nika In Complex With Ni-(l-his)2
pdb|4I8C|B Chain B, X-ray Structure Of Nika In Complex With Ni-(l-his)2
pdb|4I8C|C Chain C, X-ray Structure Of Nika In Complex With Ni-(l-his)2
Length = 502
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 952 KYENFVFNINKASEK-IITKILFNTYP---SYAFLIKKSNYLTNFENENIWIIDPLDNIT 1007
+Y+ FV N N EK I KI FN P + A + + + NE + PLD
Sbjct: 174 QYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLL---PLDTFA 230
Query: 1008 NFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIR------VNK 1061
FS N P Y H+ + PI + A+ A NE +R VNK
Sbjct: 231 RFSQN-PAY-------------HTQLSQPIET-VMLALNTAKAPTNELAVREALNYAVNK 275
Query: 1062 RNKINDALIGT 1072
++ I++AL GT
Sbjct: 276 KSLIDNALYGT 286
>pdb|1UIU|A Chain A, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Unliganded Form)
pdb|1UIU|B Chain B, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Unliganded Form)
pdb|1UIV|A Chain A, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Liganded Form)
pdb|1UIV|B Chain B, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Liganded Form)
Length = 502
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 952 KYENFVFNINKASEK-IITKILFNTYP---SYAFLIKKSNYLTNFENENIWIIDPLDNIT 1007
+Y+ FV N N EK I KI FN P + A + + + NE + PLD
Sbjct: 174 QYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLL---PLDTFA 230
Query: 1008 NFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIR------VNK 1061
FS N P Y H+ + PI + A+ A NE +R VNK
Sbjct: 231 RFSQN-PAY-------------HTQLSQPIET-VMLALNTAKAPTNELAVREALNYAVNK 275
Query: 1062 RNKINDALIGT 1072
++ I++AL GT
Sbjct: 276 KSLIDNALYGT 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.143 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,213,240
Number of Sequences: 62578
Number of extensions: 1029686
Number of successful extensions: 2576
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2480
Number of HSP's gapped (non-prelim): 61
length of query: 1178
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1068
effective length of database: 8,089,757
effective search space: 8639860476
effective search space used: 8639860476
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)