BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5224
(1178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50974|NUOM_RHOCA NADH-quinone oxidoreductase subunit M OS=Rhodobacter capsulatus
GN=nuoM PE=3 SV=1
Length = 512
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/409 (46%), Positives = 280/409 (68%), Gaps = 22/409 (5%)
Query: 196 TCITSLIGLLSLVG-APFFSGF-YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITL 253
T +T L+ LL L G P G + +D+ WI ++Y LG+DG+S+ F+ LT F+
Sbjct: 42 TVVTFLVSLLLLAGFDPANPGMQFVEDRA--WI--MGLHYKLGVDGISILFVMLTTFLMP 97
Query: 254 IIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
+ I + ++ ++ EYM AFL+L L+IG F ALD +LFY+FFEA LIP+F+IIG WGG
Sbjct: 98 LTIASAWHVETRVKEYMIAFLVLEALMIGVFVALDLVLFYLFFEAGLIPMFLIIGIWGGK 157
Query: 314 NRSYAAIKFFLYTLMGSLLMLISMIYLYYISNK-------SFNI-------LSWHQLSIT 359
R YAA KFFLYT +GS+LML++M+ +Y ++ SF+ L W L T
Sbjct: 158 ERIYAAFKFFLYTFLGSVLMLVAMVAMYMMAGTTDIVTLMSFDFPHADLPFLGWWTL--T 215
Query: 360 KIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSL 419
Q LF+ FF +FA+K+P+WP+HTWLPDAHV+APT GSV+LAA++LK+G YG LRFSL
Sbjct: 216 GGVQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAVLLKMGGYGFLRFSL 275
Query: 420 PIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI 479
P+FP + + + LS ++I+Y SL+A+ Q D+KKLIAYSS+AHMG+VT+GIF +
Sbjct: 276 PMFPVGAETMTTFVFILSAVAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQ 335
Query: 480 SIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANC 539
+ GAI QM+SH IS A+F+ +G +Y++M TR I+ +GG++N +P +++ F+ F++AN
Sbjct: 336 GVDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANV 395
Query: 540 SLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
LPGTSGF+GEF+ +L + N + + ++ +I SAAY+L L + ++F
Sbjct: 396 GLPGTSGFVGEFLTLLGIFQVNTWVALFATSGVILSAAYALWLYRRVVF 444
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K +P+HTWLPD+ ++ PT A +++ AA ++ G + R S P+F + ++ +FI
Sbjct: 233 KMPMWPVHTWLPDAHVQAPT-AGSVVLAAVLLKMGGYGFLRFSLPMFPVGAETMTTFVFI 291
Query: 108 -GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHA 160
A+ + L+ + Q D+K++IAYS+++ +GY+T+G+ GV +IF +++H
Sbjct: 292 LSAVAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDG---AIFQMLSHG 348
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + + ++ VG P SGF +
Sbjct: 349 FISGALFLCVG-VIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGE 406
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 41/313 (13%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K I+ AA K+F+ L S ML + +Y +
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKERIY---AAFKFFLYTFLGSVLMLVAMVAMYMMA 188
Query: 658 GTLELQSI--FNVIKLN-------NINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ ++ F+ + + V L L + K+ + P H W+PD +
Sbjct: 189 GTTDIVTLMSFDFPHADLPFLGWWTLTGGVQTLLFLAFFASFAVKMPMWPVHTWLPDAHV 248
Query: 709 GASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPL----VINWQKILLILAIFSLIIG 760
A T + L ++ ++ ++ LP+ + IL+ +++
Sbjct: 249 QAP--------TAGSVVLAAVLLKMGGYGFLRFSLPMFPVGAETMTTFVFILSAVAIVYT 300
Query: 761 NVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAIL 820
++ A+ Q + K++IAYSS+AHMG + I + D +F ++++ F I
Sbjct: 301 SLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQ--------QGVDGAIFQMLSHGF-IS 351
Query: 821 GAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
GA + + + + + T E+ + GL R P ALI M F + G P T GF +F
Sbjct: 352 GALFLCVGVIYDRMH-TREIAAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTL 410
Query: 881 EKIFETQKIWLLL 893
IF+ W+ L
Sbjct: 411 LGIFQVNT-WVAL 422
>sp|P29925|NQO13_PARDE NADH-quinone oxidoreductase chain 13 OS=Paracoccus denitrificans
GN=nqo13 PE=3 SV=1
Length = 513
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/385 (47%), Positives = 273/385 (70%), Gaps = 15/385 (3%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
+ WI + Y +G+DG+S+ F+ LT F+ + IL + ++ K+ EYM AFL+L GL+
Sbjct: 67 EDHAWI--MGVCYKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLM 124
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F ALD +LFY+FFEA LIP+F+IIG WGG +R YA+ KFFLYT +GS+LML++MI +
Sbjct: 125 IGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAM 184
Query: 341 YYISNKS---------FNILSWHQLSITKIE--QIWLFITFFIAFAIKIPIWPMHTWLPD 389
Y ++ + F ++ L +T + Q+ LF+ FF +FA+K+P+WP+HTWLPD
Sbjct: 185 YRMAGTTDIPTLLTFDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPD 244
Query: 390 AHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAM 449
AHV+APT GSV+LAA++LK+G YG LRFSLP+FP AS + LS I+I+Y SL+A+
Sbjct: 245 AHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVAL 304
Query: 450 VQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQM 509
Q D+KK+IAYSS+AHMG+VT+G+F +I + GAI QM+SH IS A+F+ +G +Y++M
Sbjct: 305 AQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDRM 364
Query: 510 KTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTS 569
TR I +GG++N +P ++ F+ F++AN LPGTSGF+GEF+ ++ + + + ++ +
Sbjct: 365 HTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVALVAT 424
Query: 570 TALIFSAAYSLCLSKNIIFVLGQMI 594
+ +I SAAY+L L + + LGQ+I
Sbjct: 425 SGVILSAAYALWLYRRV--TLGQLI 447
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFEL-SNTALSIILF 106
K +P+HTWLPD+ ++ PT S L+ AA ++ G + R S P+F + S A + +
Sbjct: 232 KMPMWPVHTWLPDAHVQAPTAGSVLL-AAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFW 290
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHA 160
+ AI + L+ + Q+D+K++IAYS+++ +GY+T+G +GV +IF +++H
Sbjct: 291 LSAIAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDG---AIFQMLSHG 347
Query: 161 FFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F LFL G +I + H ++I GGL MP + ++ VG P SGF +
Sbjct: 348 FISGALFLCVG-VIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGE 405
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 141/307 (45%), Gaps = 28/307 (9%)
Query: 600 NLLSIYLGLE--LMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
+L+ YL E L+ + L + I K+ I++S K+F+ L S ML + +Y +
Sbjct: 132 DLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAS---FKFFLYTFLGSVLMLVAMIAMYRMA 188
Query: 658 GTLELQSIFNVIKLNNINCSVLALSL---------LLIIVGLSFKLGISPFHMWVPDVYQ 708
GT ++ ++ + N +L +++ L + K+ + P H W+PD +
Sbjct: 189 GTTDIPTLLT-FDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPDAHV 247
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN-WQKILLILAIFSLIIGNVSAITQ 767
A ++LL+ L + + + P+ Q + L+ +++ ++ A+ Q
Sbjct: 248 QAPTAGSVLLAAV-LLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVALAQ 306
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
+ K++IAYSS+AHMG + + + N + D +F ++++ F I GA + +
Sbjct: 307 SDMKKVIAYSSVAHMGYVTMGVF----AANQI----GVDGAIFQMLSHGF-ISGALFLCV 357
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
+ + + T E+D + GL R P A + M F + G P T GF +F +F
Sbjct: 358 GVIYDRMH-TREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVD 416
Query: 888 KIWLLLL 894
W+ L+
Sbjct: 417 T-WVALV 422
>sp|P26848|NU4M_MARPO NADH-ubiquinone oxidoreductase chain 4 OS=Marchantia polymorpha
GN=ND4 PE=3 SV=2
Length = 495
Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 200/419 (47%), Positives = 284/419 (67%), Gaps = 21/419 (5%)
Query: 180 NQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKI-------WIDYFNIY 232
N +R + G IT TSLI L + FF + D K W+ Y NI
Sbjct: 31 NSRVRLIRG------ITIWTSLITFLY---SLFFWIRFENDTAKFQFVETIRWLPYSNIN 81
Query: 233 YFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLILSGLIIGAFCALDGML 291
+++GIDG+SL+F+ LT F+T I IL+ +K EYM AF I +I FC+LD ++
Sbjct: 82 FYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLI 141
Query: 292 FYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKS-FN 349
FY+FFE+ LIP+FIIIG WG R AA +FFLYTLMGSL ML++++++++ + +
Sbjct: 142 FYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQ 201
Query: 350 ILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKL 409
IL + S + QI L+I FF +F++K+P+ P+H WLP+AHVEAPT GSVILA I+LKL
Sbjct: 202 ILLTTEFS--ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259
Query: 410 GCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFV 469
G YG LRFS+P+FP+A+ YF+ I TLS+I+IIY SL + QID+KK+IAYSS+AHM FV
Sbjct: 260 GTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFV 319
Query: 470 TLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSV 529
T+G+F L I+G+I+ M+SH L+SSA+F+ +G LY++ KTR++ +GG+++ +P FS
Sbjct: 320 TIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFST 379
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+ F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL L ++F
Sbjct: 380 IFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVF 438
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ I + L I Q D+K+IIAYS+++ + ++T+G L + SI +++H
Sbjct: 285 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
+ LFL G++ K + ++ GGL MPI
Sbjct: 345 SSALFLCVGALYDRHK-TRIVKYYGGLVSTMPI 376
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 24/295 (8%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ ++ S FML I ++ TGT
Sbjct: 138 DLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ ++ + L + S K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ----ILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMI 774
+LL KL + + R I + + + L++ ++I +++ I Q + K++I
Sbjct: 254 GILL----KLGTYGFL-RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKII 308
Query: 775 AYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTC 834
AYSS+AHM + + S+ I GL + + +F +GA L +
Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGL--VSSALFLCVGA------LYDR-- 358
Query: 835 NKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+KT + + GL P + I + F + P T F +F I F+ +
Sbjct: 359 HKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSL 413
>sp|Q9ZCG0|NUOM_RICPR NADH-quinone oxidoreductase subunit M OS=Rickettsia prowazekii
(strain Madrid E) GN=nuoM PE=3 SV=1
Length = 491
Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 268/380 (70%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG++++F+ LT+F+TLI I+ SL IKK + EY+ FL+
Sbjct: 64 YQFVERYTWLDKIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLL 123
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ L IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 124 MESLCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLL 183
Query: 336 SMIYLYYISNKSFNILSWHQL--SITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
++IY+Y SF++ + +L +I Q L+ FIAFAIK P+ P HTWLPDAHV+
Sbjct: 184 ALIYIYS-KIHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQ 242
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+FP+AS F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 243 APTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQKD 302
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IK++IAYSSIAHMG+VT+GIF T+I I GAI QM+SH +ISS++F+ +G LY ++ T+
Sbjct: 303 IKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKE 362
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ N +P + FF+I L++ LP TSGFIGEF+ +L K N + + +I
Sbjct: 363 IAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNVVTAFIAALGII 422
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 423 LGAVYMLKLYKEVM--LGEI 440
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K+ P HTWLPD+ ++ PT S ++ + G + + PLF ++ +I ++++
Sbjct: 226 KTPMIPFHTWLPDAHVQAPTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYL 285
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHAF 161
I + L+ + Q DIK++IAYS+++ +GY+T+G +G+S +IF +++H
Sbjct: 286 SVIAIIYASLVALAQKDIKQMIAYSSIAHMGYVTIGIFSFTEIGISG---AIFQMLSHGI 342
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MPI +I +LS +G P SGF
Sbjct: 343 ISSSLFLIVGTLYERL-HTKEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGF 396
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 37/290 (12%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I N I+ AA+K+F+ S F L + +Y
Sbjct: 136 NLLLFYLFFEAILVPMYIIIGVWGGDNRIY---AALKFFLYTFFGSVFFLLALIYIYSKI 192
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLL--LIIVGLSFKLGISPFHMWVPDVYQGASIIIT 715
+ +L +I +I N + A +L I + + K + PFH W+PD + A
Sbjct: 193 HSFDLTNILELIG----NIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQAP---- 244
Query: 716 LLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQ 767
TT + L I+ +L ++ LLPL N + I L++ ++I ++ A+ Q
Sbjct: 245 ----TTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQ 300
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
+ K+MIAYSSIAHMG + I S + IF G+ I + +F I+G
Sbjct: 301 KDIKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGI--ISSSLFLIVGTL---- 354
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M S G P T GF +F
Sbjct: 355 ----YERLHTKEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEF 400
>sp|Q92G96|NUOM_RICCN NADH-quinone oxidoreductase subunit M OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=nuoM PE=3 SV=1
Length = 493
Score = 347 bits (889), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 262/380 (68%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S+ F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYAWLDKIGLEFHVGVDGISILFVVLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
S+IY+Y SF++ QL+ I Q L+ FIAFA+KIPI P HTWLPDAHV+
Sbjct: 186 SLIYIYS-KMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQ 244
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 245 APTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAYSSIAHMG+VT+GIF TK + GAI QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKE 364
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 365 IAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAALGII 424
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
F A Y L L K ++ LG++
Sbjct: 425 FGAVYMLKLYKEVM--LGEI 442
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PL + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGF 398
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I KN I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGKNRIY---AALKFFLYTFFGSVFFLLSLIYIYSKM 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L IF + +NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HSFDLTYIFQLT--DNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEF 402
>sp|P93313|NU4M_ARATH NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis thaliana
GN=ND4 PE=2 SV=2
Length = 495
Score = 342 bits (876), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/366 (50%), Positives = 255/366 (69%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I IL+ ++ EY+ AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLIS-MIYLY 341
FC LD +LFY+F E+ LIP+FIIIG WG R AA +FFLYTL+GSL ML++ ++ L+
Sbjct: 134 FCMLDLLLFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILF 193
Query: 342 YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
IL + S + QI+L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LK G YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFSFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 18/199 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT
Sbjct: 138 DLLLFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGT 197
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIII 714
+LQ I + + L ++ + K+ + P H+W+P+ + G+ I+
Sbjct: 198 TDLQ-ILLTTEFSERRQIFLWIAFF---ASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 253
Query: 715 TLLLS--TTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKR 772
+LL T L + ++ C P + L+ ++I +++ + Q + K+
Sbjct: 254 GILLKFGTYGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKK 306
Query: 773 MIAYSSIAHMGLMLFSIIS 791
+IAYSS+AHM L+ + S
Sbjct: 307 IIAYSSVAHMNLVTIGMFS 325
>sp|P27572|NU4M_WHEAT NADH-ubiquinone oxidoreductase chain 4 OS=Triticum aestivum GN=ND4
PE=2 SV=2
Length = 495
Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 257/366 (70%), Gaps = 5/366 (1%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLA-EYMSAFLILSGLIIGA 283
W+ Y NI+ ++GIDGLSL+F+ LT F+ I IL+ + EY+ AFLI L+I
Sbjct: 74 WLPYENIHLYMGIDGLSLFFVILTTFLIPICILVGWSGMRSFGKEYIIAFLICEFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
FC LD +LFY+FFE+ LIP+FIIIG WG R AA +FFLYTL+GS+ ML++++ +
Sbjct: 134 FCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILL 193
Query: 343 ISNKS-FNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVI 401
+ + IL + S + QI L+I FF +FA+K+P+ P+H WLP+AHVEAPT GSVI
Sbjct: 194 QTGTTDLQILLTTEFS--ERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 251
Query: 402 LAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYS 461
LA I+LKLG YG LRFS+P+FP+A+ F+ I TLS I+IIY SL + QID+KK+IAYS
Sbjct: 252 LAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYS 311
Query: 462 SIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGII 521
S+AHM VT+G+F L I G+I+ M+SH L+SSA+F+ +G LY++ KTRL+ +GG++
Sbjct: 312 SVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLV 371
Query: 522 NVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLC 581
+ +P+FS F F+LAN SLPGTS FIGEF+I++ A + N + L + +I AAYSL
Sbjct: 372 STMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRALGMILGAAYSLW 431
Query: 582 LSKNII 587
L ++
Sbjct: 432 LYNRVV 437
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A ++ G + R S P+F + + ++
Sbjct: 226 VKVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIY 284
Query: 107 -IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
+ AI + L + Q D+K+IIAYS+++ + +T+G L + SI +++H
Sbjct: 285 TLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLV 344
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 345 SSALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 27/253 (10%)
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGN---NLLSIYLG 607
F +IL+ CI V S F Y I F++ + +MI+ +LL Y+
Sbjct: 92 FFVILTTFLIPICILVGWSGMRSFGKEYI------IAFLICEFLMIAVFCMLDLLLFYVF 145
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFN 667
E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 146 FESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQ---- 201
Query: 668 VIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA----SII---ITLLLST 720
++ + L + + K+ + P H+W+P+ + A S+I I L L T
Sbjct: 202 ILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGT 261
Query: 721 TPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIA 780
L + ++ C P + L+ ++I +++ + Q + K++IAYSS+A
Sbjct: 262 YGFLRFSIPMFPEATLCFTPFIYT-------LSAIAIIYTSLTTLRQIDLKKIIAYSSVA 314
Query: 781 HMGLMLFSIISIK 793
HM L+ + S+
Sbjct: 315 HMNLVTIGMFSLN 327
>sp|Q68VV6|NUOM_RICTY NADH-quinone oxidoreductase subunit M OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=nuoM PE=3 SV=1
Length = 494
Score = 341 bits (875), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/380 (48%), Positives = 264/380 (69%), Gaps = 6/380 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +GIDG++++F+ LT+F+TLI I+ S+ IKK + EY+ FL+
Sbjct: 67 YQFVERYTWLDKIGLEFHVGIDGIAIFFVVLTSFLTLICIIGSIFTIKKYIKEYLVCFLL 126
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF A++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 127 MESFCIGAFTAVNLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLL 186
Query: 336 SMIYLYYISNKSFNILSWHQLS--ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
++IY+Y SF++ L+ I Q L+ T FIAFA+KIP+ P HTWLPDAHV+
Sbjct: 187 ALIYIYS-KIHSFDLTYILALTENIPLFAQKILWWTIFIAFAVKIPMIPFHTWLPDAHVQ 245
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA I+LKLG YG LR LP+ P+ S F+ +I LS+I+IIY SL+A+ Q D
Sbjct: 246 APTSGSVILAGILLKLGSYGFLRVLLPLLPNVSQEFAIYVIYLSVIAIIYSSLVALAQKD 305
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IK++IAYSSIAHMG+VT+GIF T+ I GAI QM+SH ++SS++F+ +G LY ++ T+
Sbjct: 306 IKQMIAYSSIAHMGYVTIGIFSFTETGISGAIFQMLSHGVVSSSLFLIVGTLYERLHTKE 365
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
I+ +GG+ + +P + FF+I L++ LP TSGFIGEF+ +L K N + + +I
Sbjct: 366 IAKYGGVASKMPVLATFFMITMLSSIGLPSTSGFIGEFLSLLGIYKVNVVAACIAALGII 425
Query: 574 FSAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 426 LGAVYMLKLYKEVM--LGEI 443
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 14/177 (7%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITR-MSPLFELSNTALSI-IL 105
K P HTWLPD+ ++ PT S ++ A ++ G + R + PL + +I ++
Sbjct: 228 VKIPMIPFHTWLPDAHVQAPTSGSVIL-AGILLKLGSYGFLRVLLPLLPNVSQEFAIYVI 286
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTH 159
++ I + L+ + Q DIK++IAYS+++ +GY+T+G+ G+S +IF +++H
Sbjct: 287 YLSVIAIIYSSLVALAQKDIKQMIAYSSIAHMGYVTIGIFSFTETGISG---AIFQMLSH 343
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +LS +G P SGF
Sbjct: 344 GVVSSSLFLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMITMLSSIGLPSTSGF 399
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 134/293 (45%), Gaps = 37/293 (12%)
Query: 597 SGNNLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILY 654
+ NLL YL E + + + ++I N I+ AA+K+F+ S F L + +Y
Sbjct: 136 TAVNLLLFYLFFEAILVPMYIIIGVWGGDNRIY---AALKFFLYTFFGSVFFLLALIYIY 192
Query: 655 GITGTLELQSIFNVIKLNNINCSVLALSLL--LIIVGLSFKLGISPFHMWVPDVYQGASI 712
+ +L I + + N + A +L I + + K+ + PFH W+PD + A
Sbjct: 193 SKIHSFDLTYILALTE----NIPLFAQKILWWTIFIAFAVKIPMIPFHTWLPDAHVQAP- 247
Query: 713 IITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSA 764
T+ + L I+ +L ++ LLPL+ N + I L++ ++I ++ A
Sbjct: 248 -------TSGSVILAGILLKLGSYGFLRVLLPLLPNVSQEFAIYVIYLSVIAIIYSSLVA 300
Query: 765 ITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFG 824
+ Q + K+MIAYSSIAHMG + I S + + IF G+ + + +F I+G
Sbjct: 301 LAQKDIKQMIAYSSIAHMGYVTIGIFSFTETGISGAIFQMLSHGV--VSSSLFLIVGTL- 357
Query: 825 VIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M S G P T GF +F
Sbjct: 358 -------YERLHTKEIAKYGGVASKMPVLATFFMITMLSSIGLPSTSGFIGEF 403
>sp|Q4UK26|NUOM_RICFE NADH-quinone oxidoreductase subunit M OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=nuoM PE=3 SV=1
Length = 493
Score = 340 bits (871), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 182/379 (48%), Positives = 258/379 (68%), Gaps = 4/379 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +G+DG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFIERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ +LFY+FFEA L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSVFFLL 185
Query: 336 SMIYLY-YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEA 394
S+IY+Y I N + +I Q L+ FIAFA+KIPI P HTWLPDAHV+A
Sbjct: 186 SLIYIYSKIHNFDLTYIPELTGNIPLFTQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQA 245
Query: 395 PTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDI 454
PT GSVILA I+LK G YG LR LP+F S F+ +I LS+I+IIY SL+A+ Q D+
Sbjct: 246 PTSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAIIYASLVALAQKDM 305
Query: 455 KKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLI 514
KK+IAYSSIAHMG+VT+GIF T+ + GAI QM+SH +ISS +F+ +G LY ++ T+ I
Sbjct: 306 KKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKEI 365
Query: 515 SNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIF 574
+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N + + +I
Sbjct: 366 AKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFIAALGIIL 425
Query: 575 SAAYSLCLSKNIIFVLGQM 593
A Y L L K ++ LG++
Sbjct: 426 GAVYMLKLYKEVM--LGEI 442
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFIGAITA 112
P HTWLPD+ ++ PT S ++ + G + + PLF + +I ++++ I
Sbjct: 233 PFHTWLPDAHVQAPTSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAI 292
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKALL 166
+ L+ + Q D+K++IAYS+++ +GY+T+G+ GVS +IF +++H + L
Sbjct: 293 IYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSG---AIFQMLSHGVISSCL 349
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
FL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 350 FLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E + + + ++I +N I+ AA+K+F+ S F L + +Y
Sbjct: 138 NLLLFYLFFEAILVPMYIIIGVWGGENRIY---AALKFFLYTFFGSVFFLLSLIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+L I + NI + I + + K+ I PFH W+PD + A
Sbjct: 195 HNFDLTYIPELT--GNIPLFTQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ + ++ LLPL + + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSIAHMG + I S + + IF G+ I + +F I+G
Sbjct: 305 MKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGV--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>sp|Q1RKE5|NUOM_RICBR NADH-quinone oxidoreductase subunit M OS=Rickettsia bellii (strain
RML369-C) GN=nuoM PE=3 SV=1
Length = 494
Score = 336 bits (861), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 182/381 (47%), Positives = 263/381 (69%), Gaps = 8/381 (2%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
Y ++ W+D + + +GIDG+S++F+ LT+F+TLI I+ SL +KK + EY+ FL+
Sbjct: 66 YQFVERYSWLDKIGLEFHVGIDGISIFFVSLTSFLTLICIIGSLFTVKKYIKEYLVCFLL 125
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI 335
+ IGAF +++ ++FY+FFE L+P++IIIG WGG NR YAA+KFFLYT GS+ L+
Sbjct: 126 MESFCIGAFTSINLLVFYLFFEVILVPMYIIIGVWGGENRIYAAVKFFLYTFFGSVFFLL 185
Query: 336 SMIYLYYISNKSFNILSWHQLS---ITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHV 392
S+IY+Y SF++ + + + ++QI L+ FIAFAIKIP+ P HTWLPDAHV
Sbjct: 186 SIIYIYS-KIHSFDLSNIGEFTNNFPLHVQQI-LWWAIFIAFAIKIPMIPFHTWLPDAHV 243
Query: 393 EAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQI 452
+APT GSVILA I+LKLG YG LR LP+ P+AS F+ +I LS+I+IIY SL+A+ Q
Sbjct: 244 QAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALAQK 303
Query: 453 DIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTR 512
D+KK+IAYSSI HMG+VT+GIF T + GA+ QM+SH +ISS +F+ +G LY ++ T+
Sbjct: 304 DMKKMIAYSSITHMGYVTIGIFSFTDSGVSGALFQMLSHGIISSCLFLIVGTLYERLHTK 363
Query: 513 LISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTAL 572
I+ +GG+ + +P + FF+I L + LPGTSGFIGEF+ +L K N L + +
Sbjct: 364 EIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFLAALGI 423
Query: 573 IFSAAYSLCLSKNIIFVLGQM 593
I A Y L L K ++ LG++
Sbjct: 424 ILGAIYMLKLYKEVM--LGEI 442
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 12/175 (6%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI-ILFI 107
K P HTWLPD+ ++ PT S ++ + G + + PL ++ +I ++++
Sbjct: 228 KIPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWL 287
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAF 161
I + L+ + Q D+K++IAYS+++ +GY+T+G+ GVS ++F +++H
Sbjct: 288 SVIAIIYASLVALAQKDMKKMIAYSSITHMGYVTIGIFSFTDSGVSG---ALFQMLSHGI 344
Query: 162 FKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G++ + H ++I GG+ MP+ +I +L VG P SGF
Sbjct: 345 ISSCLFLIVGTLYERL-HTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGF 398
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 600 NLLSIYLGLELMSLTLCVLIA--SQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGIT 657
NLL YL E++ + + ++I +N I+ AA+K+F+ S F L I +Y
Sbjct: 138 NLLVFYLFFEVILVPMYIIIGVWGGENRIY---AAVKFFLYTFFGSVFFLLSIIYIYSKI 194
Query: 658 GTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLL 717
+ +L +I NN V + I + + K+ + PFH W+PD + A
Sbjct: 195 HSFDLSNIGEFT--NNFPLHVQQILWWAIFIAFAIKIPMIPFHTWLPDAHVQAP------ 246
Query: 718 LSTTPKLSLFVIIYRL----LIKCLLPLVINWQKILLI----LAIFSLIIGNVSAITQYN 769
T+ + L I+ +L ++ LLPL+ N + I L++ ++I ++ A+ Q +
Sbjct: 247 --TSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALAQKD 304
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
K+MIAYSSI HMG + I S S + +F G+ I + +F I+G
Sbjct: 305 MKKMIAYSSITHMGYVTIGIFSFTDSGVSGALFQMLSHGI--ISSCLFLIVGTL------ 356
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
T E+ + G+ + P A MI M G P T GF +F
Sbjct: 357 --YERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEF 402
>sp|P48915|NU4M_CHOCR NADH-ubiquinone oxidoreductase chain 4 OS=Chondrus crispus GN=ND4
PE=3 SV=1
Length = 492
Score = 328 bits (842), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 195/396 (49%), Positives = 279/396 (70%), Gaps = 3/396 (0%)
Query: 195 ITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLI 254
I+C+T L LL + + F+ +W +FN+YY +GIDG+SL+FI LT + +
Sbjct: 41 ISCLTFLFSLLLWIQFNSGTSFFQFSTTFLWFPFFNLYYTIGIDGISLFFILLTTLLIIS 100
Query: 255 IILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGS 313
IL+S I+ L +Y+ FLIL L+I F LD +LFYI+FE+ LIP+F+I+G WG
Sbjct: 101 CILVSWSSIQTNLKDYLICFLILEFLLIQVFSVLDLLLFYIYFESVLIPMFLIVGVWGSR 160
Query: 314 NRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFI 372
R AA +FFLYTL+GSLLML++++ +Y+ + + + W+ + ++I QI+L+++FF
Sbjct: 161 QRKIRAAYQFFLYTLIGSLLMLLALLNIYFQTGTTDLQILWY-IQFSEISQIFLWLSFFA 219
Query: 373 AFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNL 432
+FA+KIP+ P H WLP+AH EAPT GSVILA I+LK+G YG LRFSLP+FP AS +F+
Sbjct: 220 SFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLKMGGYGFLRFSLPMFPVASIFFTPF 279
Query: 433 IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHA 492
I TLSL++IIY SL + QID+KK+IAYSS++HMGFVT+GIF L I+G+I+ M+SH
Sbjct: 280 IFTLSLVAIIYASLTTLRQIDLKKIIAYSSVSHMGFVTIGIFSLNIQGIEGSILLMLSHG 339
Query: 493 LISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFM 552
L+SSA+F+ IG LY++ KTR+I + G+I V+P F VFF+ F+ AN PGTS FIGE +
Sbjct: 340 LVSSALFLCIGVLYDRYKTRVIKYYSGLIQVMPLFGVFFLFFTFANLGFPGTSSFIGEVL 399
Query: 553 IILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
++LS+ + N + + S +IF AAYS+ L IIF
Sbjct: 400 VLLSSFQINKTLTLFASLGMIFGAAYSIWLFNRIIF 435
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILF 106
K P H WLP++ E PT A ++I A ++ G + R S P+F +++ + +F
Sbjct: 223 VKIPMIPFHIWLPEAHAEAPT-AGSVILAGILLKMGGYGFLRFSLPMFPVASIFFTPFIF 281
Query: 107 IGAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVG---LGVSAYTVSIFHLMTHAFF 162
++ A + L + Q D+K+IIAYS++S +G++T+G L + SI +++H
Sbjct: 282 TLSLVAIIYASLTTLRQIDLKKIIAYSSVSHMGFVTIGIFSLNIQGIEGSILLMLSHGLV 341
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LFL G ++ + + I+ GL + MP+ + L + +G P S F
Sbjct: 342 SSALFLCIG-VLYDRYKTRVIKYYSGLIQVMPLFGVFFLFFTFANLGFPGTSSF 394
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 102/202 (50%), Gaps = 20/202 (9%)
Query: 600 NLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGT 659
+LL Y+ E + + + +++ + AA ++F+ ++ S ML + +Y TGT
Sbjct: 135 DLLLFYIYFESVLIPMFLIVGVWGSRQRKIRAAYQFFLYTLIGSLLMLLALLNIYFQTGT 194
Query: 660 LELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLS 719
+LQ I I+ + I+ L LS + K+ + PFH+W+P+ + A +++L+
Sbjct: 195 TDLQ-ILWYIQFSEISQIFLWLSFF---ASFAVKIPMIPFHIWLPEAHAEAPTAGSVILA 250
Query: 720 TTPKLSLFVIIYRL----LIKCLLPLV----INWQKILLILAIFSLIIGNVSAITQYNFK 771
I+ ++ ++ LP+ I + + L++ ++I +++ + Q + K
Sbjct: 251 G--------ILLKMGGYGFLRFSLPMFPVASIFFTPFIFTLSLVAIIYASLTTLRQIDLK 302
Query: 772 RMIAYSSIAHMGLMLFSIISIK 793
++IAYSS++HMG + I S+
Sbjct: 303 KIIAYSSVSHMGFVTIGIFSLN 324
>sp|Q37617|NU4M_PROWI NADH-ubiquinone oxidoreductase chain 4 OS=Prototheca wickerhamii
GN=ND4 PE=3 SV=1
Length = 523
Score = 327 bits (837), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 170/356 (47%), Positives = 248/356 (69%), Gaps = 3/356 (0%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
LG+DG+SL+FI LT + I IL+S + I+ + EY AFL+L L++ F LD +LFY
Sbjct: 115 LGVDGISLFFIILTTLLVPICILVSWNNIEVYVKEYCIAFLVLETLMLTVFSVLDLLLFY 174
Query: 294 IFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILS 352
IFFE+ LIP+FIIIG WG R AA +FFLYTL GS+LML++++ +Y+ + +I
Sbjct: 175 IFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLAILLIYF-QTGTLDIEM 233
Query: 353 WHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCY 412
+ ++ Q L++ FF +FA+K+P+ P+H WLP+AHVEAPT GSVILA I+LKLG Y
Sbjct: 234 LYLSDFSETRQCILWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTY 293
Query: 413 GLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLG 472
G LRFS+P+FP A YF+ LI T+S+I+I+Y S + QID+KK+IAYSS+AHM FVT+G
Sbjct: 294 GFLRFSIPLFPYACIYFTPLIYTMSVIAIVYTSCTTIRQIDLKKIIAYSSVAHMNFVTIG 353
Query: 473 IFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFI 532
+F I+G+I+ MISH L+S A+F+ +G LY++ KTRL+ + G +P F++ F+
Sbjct: 354 LFSQNTQGIEGSILLMISHGLVSPALFLCVGVLYDRHKTRLLRYYSGCGQTMPIFALLFV 413
Query: 533 IFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++AN SLPGTS F GEF++ + + + N + +T ++ AAY+L L +I+
Sbjct: 414 FFTMANISLPGTSSFPGEFLVFIGSYQNNSFVAFCAATGMVLGAAYALWLCNRLIY 469
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 156/343 (45%), Gaps = 28/343 (8%)
Query: 543 GTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLL 602
G G I F IIL+ + CI V + ++ Y C++ ++ L + + S +LL
Sbjct: 116 GVDG-ISLFFIILTTLLVPICILVSWNNIEVYVKEY--CIAFLVLETL-MLTVFSVLDLL 171
Query: 603 SIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLEL 662
Y+ E + + + ++I + AA ++F+ + S ML I ++Y TGTL++
Sbjct: 172 LFYIFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLAILLIYFQTGTLDI 231
Query: 663 QSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVY-----QGASIIITLL 717
+ ++ L++ + + + L + K+ + P H+W+P+ + G+ I+ +L
Sbjct: 232 EMLY----LSDFSETRQCILWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIL 287
Query: 718 LSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYS 777
L KL + + R I I + ++ +++ +++ + + I Q + K++IAYS
Sbjct: 288 L----KLGTYGFL-RFSIPLFPYACIYFTPLIYTMSVIAIVYTSCTTIRQIDLKKIIAYS 342
Query: 778 SIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKT 837
S+AHM + + S T + + +I++ F + +L + +KT
Sbjct: 343 SVAHMNFVTIGLFSQNT--------QGIEGSILLMISHGLVSPALFLCVGVLYDR--HKT 392
Query: 838 DELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIF 880
L + G Q P AL+ + F + P T F +F +F
Sbjct: 393 RLLRYYSGCGQTMPIFALLFVFFTMANISLPGTSSFPGEFLVF 435
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLFELSNTALSIILFI 107
K P+H WLP++ +E PT A ++I A ++ G + R S PLF + + +++
Sbjct: 258 KVPMVPVHIWLPEAHVEAPT-AGSVILAGILLKLGTYGFLRFSIPLFPYACIYFTPLIYT 316
Query: 108 GAITAF-FMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
++ A + I Q D+K+IIAYS+++ + ++T+GL SI +++H
Sbjct: 317 MSVIAIVYTSCTTIRQIDLKKIIAYSSVAHMNFVTIGLFSQNTQGIEGSILLMISHGLVS 376
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPI 195
LFL G ++ + + +R G + MPI
Sbjct: 377 PALFLCVG-VLYDRHKTRLLRYYSGCGQTMPI 407
>sp|A4G631|NUON_HERAR NADH-quinone oxidoreductase subunit N OS=Herminiimonas
arsenicoxydans GN=nuoN PE=3 SV=1
Length = 494
Score = 319 bits (817), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 155/315 (49%), Positives = 221/315 (70%), Gaps = 1/315 (0%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
VLGQM+M+S NN L IYLGLE+MSL+L L+A +++N + EAA+KYF+LG L+SGF+LY
Sbjct: 119 VLGQMVMMSANNFLIIYLGLEIMSLSLYALVAFRRDNAVAIEAAMKYFVLGALASGFLLY 178
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GIS+LYG TG+L+L + VI +N VL L+ ++ GL+FKLG PFHMWVPDVYQ
Sbjct: 179 GISMLYGATGSLDLTEVARVIATGAVNKPVLIFGLVFVVAGLAFKLGAVPFHMWVPDVYQ 238
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TL+L PKL+ F I RLL++ L L I+WQ++L IL++ S+ IGN++AI Q
Sbjct: 239 GAPTAVTLMLGGAPKLAAFAITIRLLVEALPALAIDWQQMLTILSVLSMAIGNITAIMQT 298
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM+AYS+I+ +G +L ++S + + N + +FY+ITY+ LG FGVI+L
Sbjct: 299 NIKRMLAYSTISQVGFILLGLLSGVVAGADGSTTNGYGAAMFYVITYVLTTLGMFGVIML 358
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L + + D +D F GL+QR+PW A + ++ MFSLAG PP +GFYAK + + + T +
Sbjct: 359 L-SRAGFEADNIDDFKGLNQRSPWFAFVTLLLMFSLAGVPPVVGFYAKLAVLQAVLSTGQ 417
Query: 889 IWLLLLIIMCSLIGA 903
IWL ++ ++ SLIGA
Sbjct: 418 IWLAVVAVLFSLIGA 432
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 84/290 (28%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRI---------------- 45
+NN ++LG EI+ ++ Y L+ F D +AI A +K F++ +
Sbjct: 128 ANNFLIIYLGLEIMSLSLYALVAFRRDNAVAIEAAMKYFVLGALASGFLLYGISMLYGAT 187
Query: 46 --------------GAMAKS-----------------AQFPLHTWLPDSMEG-PTPASAL 73
GA+ K P H W+PD +G PT + +
Sbjct: 188 GSLDLTEVARVIATGAVNKPVLIFGLVFVVAGLAFKLGAVPFHMWVPDVYQGAPTAVTLM 247
Query: 74 IHAATMVTA---GIFMITRMSPLFELS----NTALSII-LFIGAITAFFMGLLGIIQNDI 125
+ A + A I ++ P + T LS++ + IG ITA I+Q +I
Sbjct: 248 LGGAPKLAAFAITIRLLVEALPALAIDWQQMLTILSVLSMAIGNITA-------IMQTNI 300
Query: 126 KRIIAYSTLSQLGYMTVGL--GVSA---------YTVSIFHLMTH-----AFFKALLFLS 169
KR++AYST+SQ+G++ +GL GV A Y ++F+++T+ F ++ LS
Sbjct: 301 KRMLAYSTISQVGFILLGLLSGVVAGADGSTTNGYGAAMFYVITYVLTTLGMFGVIMLLS 360
Query: 170 AGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+I + GL + P +L+ + SL G P GFY+K
Sbjct: 361 RAGF-----EADNIDDFKGLNQRSPWFAFVTLLLMFSLAGVPPVVGFYAK 405
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 24/255 (9%)
Query: 318 AAIKFFLYTLMGS--LLMLISMIYLYYISNKSFNILSWHQL----SITKIEQIWLFITFF 371
AA+K+F+ + S LL ISM+Y + S ++ ++ ++ K I+ +
Sbjct: 161 AAMKYFVLGALASGFLLYGISMLY---GATGSLDLTEVARVIATGAVNKPVLIFGLVFVV 217
Query: 372 IAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGL-LRFSLPIFPDASYYFS 430
A K+ P H W+PD + APT +++L KL + + +R + P + +
Sbjct: 218 AGLAFKLGAVPFHMWVPDVYQGAPTAVTLMLGGAP-KLAAFAITIRLLVEALPALAIDWQ 276
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQG------- 483
++ LS++S+ ++ A++Q +IK+++AYS+I+ +GF+ LG+ G
Sbjct: 277 QMLTILSVLSMAIGNITAIMQTNIKRMLAYSTISQVGFILLGLLSGVVAGADGSTTNGYG 336
Query: 484 -AIIQMISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFS--VFFIIFSLANC 539
A+ +I++ L + MF I L + I +F G+ P F+ ++FSLA
Sbjct: 337 AAMFYVITYVLTTLGMFGVIMLLSRAGFEADNIDDFKGLNQRSPWFAFVTLLLMFSLAG- 395
Query: 540 SLPGTSGFIGEFMII 554
+P GF + ++
Sbjct: 396 -VPPVVGFYAKLAVL 409
>sp|Q04050|NU4M_BRACM NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris
GN=ND4 PE=3 SV=1
Length = 495
Score = 317 bits (812), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 171/365 (46%), Positives = 246/365 (67%), Gaps = 3/365 (0%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGA 283
W+ Y NI ++LGIDG+SL+F+ LT F+ I I + ++ EY++AFLI L+I
Sbjct: 74 WLPYENINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITAFLIREFLMIAV 133
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLMLISMIYLYY 342
F LD +LFY+F E+ IP+FIIIG WG R AA +FFLYTL+GSL ML++++ + +
Sbjct: 134 FRMLDLLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILF 193
Query: 343 ISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
+ + +S ++ QI+L+I F +FA+K+P+ P+H WLP+AHVEAPT GSVIL
Sbjct: 194 QTGTTDLQISL-TTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVIL 252
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I LK G +G LRFS+P+FP+A+ + I TLS I+IIY SL QID+KK+IAYSS
Sbjct: 253 AGIPLKFGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSS 312
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
+AHM VT+G+F I G+I+ M+SH L+ SA+F+ +G LY++ KTRL+ +GG+++
Sbjct: 313 VAHMNLVTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVS 372
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCL 582
+P+ S F F+LAN S PGTS FIGEF I++ A + N + L + +I AAYSL L
Sbjct: 373 TMPNLSTIFFSFTLANMSSPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSLWL 432
Query: 583 SKNII 587
++
Sbjct: 433 YNRVV 437
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 8/151 (5%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K P+H WLP++ +E PT A ++I A + G R S P+F E + + I
Sbjct: 227 KVPMVPVHIWLPEAHVEAPT-AGSVILAGIPLKFGTHGFLRFSIPMFPEATLCSTPFIYT 285
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFK 163
+ AI + L Q D+K+IIAYS+++ + +T+G+ + SI +++H
Sbjct: 286 LSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILPMLSHGLVP 345
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+ LFL G ++ + + +R GGL MP
Sbjct: 346 SALFLCVG-VLYDRHKTRLVRYYGGLVSTMP 375
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 29/255 (11%)
Query: 548 IGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLSI--- 604
I F +IL+ CI V S + Y F++ + +MI+ +L +
Sbjct: 89 ISLFFVILTTFLIPICISVGWSGMRSYGKEYITA------FLIREFLMIAVFRMLDLLLF 142
Query: 605 YLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQS 664
Y+ E + + + ++I + +AA ++F+ +L S FML I ++ TGT +LQ
Sbjct: 143 YVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTTDLQ- 201
Query: 665 IFNVIKLNNINCSVLALSLLLI-IVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTPK 723
I L + L + + K+ + P H+W+P+ + A +++L+ P
Sbjct: 202 ----ISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPL 257
Query: 724 -------LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAY 776
L + ++ C P + L+ ++I +++ Q + K++IAY
Sbjct: 258 KFGTHGFLRFSIPMFPEATLCSTPFIYT-------LSAIAIIYTSLTTSRQIDLKKIIAY 310
Query: 777 SSIAHMGLMLFSIIS 791
SS+AHM L+ + S
Sbjct: 311 SSVAHMNLVTIGMFS 325
>sp|B2JDL5|NUON_BURP8 NADH-quinone oxidoreductase subunit N OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=nuoN PE=3 SV=1
Length = 492
Score = 300 bits (768), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 149/315 (47%), Positives = 213/315 (67%), Gaps = 1/315 (0%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LGQ++MISGNN L++YLGLELMSL+L IA ++ N S+EAA+KY++LG L+SGF+LY
Sbjct: 117 LLGQLVMISGNNFLTLYLGLELMSLSLYAAIALRRENAPSTEAAMKYYVLGALASGFLLY 176
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
GIS+LYG TG+LEL + + IN VL ++ I+ G++FK+G PFHMWVPDVYQ
Sbjct: 177 GISMLYGATGSLELNEVLKAVASGRINDVVLLFGVIFIVAGVAFKMGAVPFHMWVPDVYQ 236
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TL++ PK++ F R L+ LLPL ++WQ++L+ILA SLI+GN++ I Q
Sbjct: 237 GAPTAMTLIVGGGPKVAAFAWGLRFLVMGLLPLAVDWQEMLVILAALSLIVGNITGIVQR 296
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM+AYS+I++MG +L +++ ++ S +FY I Y+ LG+FGV++L
Sbjct: 297 NVKRMLAYSAISNMGFVLLGLLAGVVDGKTGAAASAYGSAMFYSIVYLITTLGSFGVVML 356
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L + + LD F GL+QR+P A +MM+ MFSLAG PP +GFYAK + E
Sbjct: 357 LARREF-EAETLDDFKGLNQRSPVFAFVMMVMMFSLAGIPPAVGFYAKLAVLEATMNAGL 415
Query: 889 IWLLLLIIMCSLIGA 903
WL +L ++ SL GA
Sbjct: 416 TWLAVLAVITSLFGA 430
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 46 GAMAKSAQFPLHTWLPDSMEG-PTPASALIHAATMVTA---GI-FMITRMSPLF----EL 96
G K P H W+PD +G PT + ++ V A G+ F++ + PL E+
Sbjct: 217 GVAFKMGAVPFHMWVPDVYQGAPTAMTLIVGGGPKVAAFAWGLRFLVMGLLPLAVDWQEM 276
Query: 97 SNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSI 153
++ L +G IT GI+Q ++KR++AYS +S +G++ +GL V T +
Sbjct: 277 LVILAALSLIVGNIT-------GIVQRNVKRMLAYSAISNMGFVLLGLLAGVVDGKTGAA 329
Query: 154 FHLMTHAFFKALLFL-----SAGSIIINMKHN---QDIRNMGGLYKYMPITCITSLIGLL 205
A F ++++L S G +++ + + + + GL + P+ ++ +
Sbjct: 330 ASAYGSAMFYSIVYLITTLGSFGVVMLLARREFEAETLDDFKGLNQRSPVFAFVMMVMMF 389
Query: 206 SLVGAPFFSGFYSK 219
SL G P GFY+K
Sbjct: 390 SLAGIPPAVGFYAK 403
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 136/292 (46%), Gaps = 29/292 (9%)
Query: 318 AAIKFFLYTLMGS--LLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLF--ITFFIA 373
AA+K+++ + S LL ISM+Y S + +L ++ +I + L + F +A
Sbjct: 159 AAMKYYVLGALASGFLLYGISMLYGATGSLELNEVL--KAVASGRINDVVLLFGVIFIVA 216
Query: 374 -FAIKIPIWPMHTWLPDAHVEAPTEGSVILAA-IMLKLGCYGLLRFSLPIFPDASYYFSN 431
A K+ P H W+PD + APT ++I+ + +GL + + P A +
Sbjct: 217 GVAFKMGAVPFHMWVPDVYQGAPTAMTLIVGGGPKVAAFAWGLRFLVMGLLPLAVDW-QE 275
Query: 432 LIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISH 491
+++ L+ +S+I ++ +VQ ++K+++AYS+I++MGFV LG L + G +
Sbjct: 276 MLVILAALSLIVGNITGIVQRNVKRMLAYSAISNMGFVLLG---LLAGVVDGK--TGAAA 330
Query: 492 ALISSAMFISIGFL--------------YNQMKTRLISNFGGIINVIPHFSVFFIIFSLA 537
+ SAMF SI +L + + + +F G+ P F+ ++ +
Sbjct: 331 SAYGSAMFYSIVYLITTLGSFGVVMLLARREFEAETLDDFKGLNQRSPVFAFVMMVMMFS 390
Query: 538 NCSLPGTSGFIGEFMIILSAVKFNFC-IGVLTSTALIFSAAYSLCLSKNIIF 588
+P GF + ++ + + + VL +F A Y L + K + F
Sbjct: 391 LAGIPPAVGFYAKLAVLEATMNAGLTWLAVLAVITSLFGAFYYLRIVKLMYF 442
>sp|Q2KUY6|NUON_BORA1 NADH-quinone oxidoreductase subunit N OS=Bordetella avium (strain
197N) GN=nuoN PE=3 SV=1
Length = 495
Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/315 (46%), Positives = 214/315 (67%), Gaps = 5/315 (1%)
Query: 591 GQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGI 650
GQM+MIS +L+S+YLGLELMSL L LIA +++++ ++EAA+KYF+LG L+SGF+LYG+
Sbjct: 120 GQMVMISAGSLVSVYLGLELMSLALYALIALRRDDVVATEAAMKYFVLGALASGFLLYGM 179
Query: 651 SILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA 710
S++YG TG L+L I VI L ++ ++ GL+FKLG PFHMWVPDVYQG+
Sbjct: 180 SMVYGSTGHLDLAEISRVIGSGQAKELPLVFGIVFLVAGLAFKLGAVPFHMWVPDVYQGS 239
Query: 711 SIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNF 770
+TL+L PKL+ F + RLL+ L L +WQ +L+ILA+ SL IGN++AI Q NF
Sbjct: 240 PTAVTLILGGAPKLAAFAMTLRLLVDGLHGLAADWQSMLMILAVLSLAIGNLTAIVQTNF 299
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
KRM+AYS+I+HMG +L + S + + LFY+ITY+ L +FG+++LL
Sbjct: 300 KRMLAYSTISHMGFVLLGLASGVVVGKAEAASAAYGASLFYMITYVLTTLASFGIVLLLS 359
Query: 831 NN--TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
C + D+L GL++R+PW ALI+++ MFSLAG PP +GFYAK I + + E+
Sbjct: 360 RQGFECEQIDDLK---GLNRRSPWHALIVLLLMFSLAGIPPLVGFYAKLAILQAVIESGH 416
Query: 889 IWLLLLIIMCSLIGA 903
+ L ++ ++ SLIGA
Sbjct: 417 VALAVVAVLFSLIGA 431
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 70/283 (24%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFL-------------------- 41
+ +L ++LG E++ +A Y LI D +A A +K F+
Sbjct: 127 AGSLVSVYLGLELMSLALYALIALRRDDVVATEAAMKYFVLGALASGFLLYGMSMVYGST 186
Query: 42 -------INRIGAMAKSAQFPL--------------------HTWLPDSMEGPTPASALI 74
I+R+ ++ + PL H W+PD +G A LI
Sbjct: 187 GHLDLAEISRVIGSGQAKELPLVFGIVFLVAGLAFKLGAVPFHMWVPDVYQGSPTAVTLI 246
Query: 75 HAATMVTAGIFMITRM--SPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
A M R+ L L+ S+++ + ++ L I+Q + KR++AYS
Sbjct: 247 LGGAPKLAAFAMTLRLLVDGLHGLAADWQSMLMILAVLSLAIGNLTAIVQTNFKRMLAYS 306
Query: 133 TLSQLGYMTVGLG-----------VSAYTVSIFHLMTH-----AFFKALLFLSAGSIIIN 176
T+S +G++ +GL +AY S+F+++T+ A F +L LS
Sbjct: 307 TISHMGFVLLGLASGVVVGKAEAASAAYGASLFYMITYVLTTLASFGIVLLLSRQGF--- 363
Query: 177 MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ I ++ GL + P + L+ + SL G P GFY+K
Sbjct: 364 --ECEQIDDLKGLNRRSPWHALIVLLLMFSLAGIPPLVGFYAK 404
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 18/221 (8%)
Query: 368 ITFFIA-FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGL-LRFSLPIFPDA 425
I F +A A K+ P H W+PD + +PT ++IL KL + + LR +
Sbjct: 212 IVFLVAGLAFKLGAVPFHMWVPDVYQGSPTAVTLILGGAP-KLAAFAMTLRLLVDGLHGL 270
Query: 426 SYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI--------FMLT 477
+ + ++++ L+++S+ +L A+VQ + K+++AYS+I+HMGFV LG+
Sbjct: 271 AADWQSMLMILAVLSLAIGNLTAIVQTNFKRMLAYSTISHMGFVLLGLASGVVVGKAEAA 330
Query: 478 KISIQGAIIQMISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFS--VFFIIF 534
+ ++ MI++ L + A F + L Q + I + G+ P + V ++F
Sbjct: 331 SAAYGASLFYMITYVLTTLASFGIVLLLSRQGFECEQIDDLKGLNRRSPWHALIVLLLMF 390
Query: 535 SLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
SLA +P GF + I+ + ++ L A++FS
Sbjct: 391 SLAG--IPPLVGFYAKLAILQAVIESGHV--ALAVVAVLFS 427
>sp|Q9JX92|NUOL_NEIMA NADH-quinone oxidoreductase subunit L OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=nuoL PE=3
SV=1
Length = 674
Score = 293 bits (749), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 136/177 (76%), Positives = 159/177 (89%)
Query: 45 IGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSII 104
+GAM KSAQFPLH WLPDSMEGPTP SALIHAATMVTAG+FM++RMSP++E+S+TALS+I
Sbjct: 237 VGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPIYEMSSTALSVI 296
Query: 105 LFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKA 164
+ IGAITA FMG LG+IQNDIKR++AYSTLSQLGYMTV LG SAY+V++FH+MTHAFFKA
Sbjct: 297 MVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVALGASAYSVAMFHVMTHAFFKA 356
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
LLFL+AGS II M H+QD+R+MG L KYMPIT +T LIG LSL+G PFFSGFYSKD
Sbjct: 357 LLFLAAGSAIIGMHHDQDMRHMGNLKKYMPITWLTMLIGNLSLIGTPFFSGFYSKDS 413
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG 46
MSNN QLF GWE VG+ SYLLIGF++ +P A ANLKAFLINR+G
Sbjct: 136 MSNNFIQLFFGWEAVGLVSYLLIGFYFKRPSATFANLKAFLINRVG 181
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 329 GSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLP 388
GSL YL + N + + + S+ + + LF+ K +P+H WLP
Sbjct: 198 GSLRYQDVFAYLPNVQNATIQLFPGVEWSLITVTCLLLFV----GAMGKSAQFPLHVWLP 253
Query: 389 DAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLI 447
D+ +E PT ++I AA M+ G + + R S PI+ +S S +I+ + I+ +++ +
Sbjct: 254 DS-MEGPTPISALIHAATMVTAGLFMVSRMS-PIYEMSSTALS-VIMVIGAITALFMGFL 310
Query: 448 AMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIG-FLY 506
++Q DIK+++AYS+++ +G++T+ L + A+ +++HA + +F++ G +
Sbjct: 311 GVIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAMFHVMTHAFFKALLFLAAGSAII 367
Query: 507 NQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT---SGFIGEFMIILSA 557
+ + + G + +P + ++ + N SL GT SGF + II +A
Sbjct: 368 GMHHDQDMRHMGNLKKYMP---ITWLTMLIGNLSLIGTPFFSGFYSKDSIIEAA 418
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 142/322 (44%), Gaps = 48/322 (14%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F +++I NN + ++ G E + L +LI ++ A +K F++ +
Sbjct: 126 LFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGFYFKRPSATFANLKAFLINRVGDFGF 185
Query: 647 LYGIS-ILYGITGTLELQSIFNVIK---------LNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G+L Q +F + + S++ ++ LL+ VG K
Sbjct: 186 LLGIGLVLAYFGGSLRYQDVFAYLPNVQNATIQLFPGVEWSLITVTCLLLFVGAMGKSAQ 245
Query: 697 SPFHMWVPDVYQGASIIITLLLSTT-PKLSLFVI-----IYRLLIKCLLPLVINWQKILL 750
P H+W+PD +G + I L+ + T LF++ IY + L I++
Sbjct: 246 FPLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPIYEMSSTAL-------SVIMV 298
Query: 751 ILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLF 810
I AI +L +G + I Q + KR++AYS+++ +G M ++ + ++ +F
Sbjct: 299 IGAITALFMGFLGVI-QNDIKRVVAYSTLSQLGYMTVALGA-----------SAYSVAMF 346
Query: 811 YIITYIFAILGAFGVIILLKNNTC----NKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
+++T+ F F ++ L + + ++ L + P L M+I SL G
Sbjct: 347 HVMTHAF-----FKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPITWLTMLIGNLSLIG 401
Query: 867 FPPTIGFYAKFFIFEKIFETQK 888
P GFY+K + I E K
Sbjct: 402 TPFFSGFYSK----DSIIEAAK 419
>sp|Q9K1B0|NUOL_NEIMB NADH-quinone oxidoreductase subunit L OS=Neisseria meningitidis
serogroup B (strain MC58) GN=nuoL PE=3 SV=1
Length = 674
Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/177 (76%), Positives = 159/177 (89%)
Query: 45 IGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSII 104
+GAM KSAQFPLH WLPDSMEGPTP SALIHAATMVTAG+FM++RMSP++E+S+TALS+I
Sbjct: 237 VGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPIYEMSSTALSVI 296
Query: 105 LFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKA 164
+ IGAITA FMG LG+IQNDIKR++AYSTLSQLGYMTV LG SAY+V++FH+MTHAFFKA
Sbjct: 297 MVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVALGASAYSVAMFHVMTHAFFKA 356
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSKDK 221
LLFL+AGS II M H+QD+R+MG L KYMP+T +T LIG LSL+G PFFSGFYSKD
Sbjct: 357 LLFLAAGSAIIGMHHDQDMRHMGNLKKYMPVTWLTMLIGNLSLIGTPFFSGFYSKDS 413
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG 46
MSNN QLF GWE VG+ SYLLIGF++ +P A ANLKAFLINR+G
Sbjct: 136 MSNNFIQLFFGWEAVGLVSYLLIGFYFKRPSATFANLKAFLINRVG 181
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 102/182 (56%), Gaps = 14/182 (7%)
Query: 381 WPMHTWLPDAHVEAPTE-GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
+P+H WLPD+ +E PT ++I AA M+ G + + R S PI+ +S S +I+ + I
Sbjct: 246 FPLHVWLPDS-MEGPTPISALIHAATMVTAGLFMVSRMS-PIYEMSSTALS-VIMVIGAI 302
Query: 440 SIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF 499
+ +++ + ++Q DIK+++AYS+++ +G++T+ L + A+ +++HA + +F
Sbjct: 303 TALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAMFHVMTHAFFKALLF 359
Query: 500 ISIG-FLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGT---SGFIGEFMIIL 555
++ G + + + + G + +P V ++ + N SL GT SGF + II
Sbjct: 360 LAAGSAIIGMHHDQDMRHMGNLKKYMP---VTWLTMLIGNLSLIGTPFFSGFYSKDSIIE 416
Query: 556 SA 557
+A
Sbjct: 417 AA 418
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 142/322 (44%), Gaps = 48/322 (14%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F +++I NN + ++ G E + L +LI ++ A +K F++ +
Sbjct: 126 LFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGFYFKRPSATFANLKAFLINRVGDFGF 185
Query: 647 LYGIS-ILYGITGTLELQSIFNVIK---------LNNINCSVLALSLLLIIVGLSFKLGI 696
L GI +L G+L Q +F + + S++ ++ LL+ VG K
Sbjct: 186 LLGIGLVLAYFGGSLRYQDVFAYLPNVQNATIQLFPGVEWSLITVTCLLLFVGAMGKSAQ 245
Query: 697 SPFHMWVPDVYQGASIIITLLLSTT-PKLSLFVI-----IYRLLIKCLLPLVINWQKILL 750
P H+W+PD +G + I L+ + T LF++ IY + L I++
Sbjct: 246 FPLHVWLPDSMEGPTPISALIHAATMVTAGLFMVSRMSPIYEMSSTAL-------SVIMV 298
Query: 751 ILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLF 810
I AI +L +G + I Q + KR++AYS+++ +G M ++ + ++ +F
Sbjct: 299 IGAITALFMGFLGVI-QNDIKRVVAYSTLSQLGYMTVALGA-----------SAYSVAMF 346
Query: 811 YIITYIFAILGAFGVIILLKNNTC----NKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
+++T+ F F ++ L + + ++ L + P L M+I SL G
Sbjct: 347 HVMTHAF-----FKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPVTWLTMLIGNLSLIG 401
Query: 867 FPPTIGFYAKFFIFEKIFETQK 888
P GFY+K + I E K
Sbjct: 402 TPFFSGFYSK----DSIIEAAK 419
>sp|O47497|NU4M_METSE NADH-ubiquinone oxidoreductase chain 4 OS=Metridium senile GN=ND4
PE=3 SV=1
Length = 491
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 168/358 (46%), Positives = 236/358 (65%), Gaps = 5/358 (1%)
Query: 234 FLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLF 292
FL +DG+SL+F+ LTA +T I ILIS + IK L E++ L L L++G F ALD +LF
Sbjct: 83 FLAVDGISLFFLILTALLTPICILISWNSIKFLLKEFLLCLLFLEVLLMGVFSALDLLLF 142
Query: 293 YIFFEATLIPIFIIIGTWGG-SNRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNKSFNI 350
YI FE LIP+F++IG WG + A+ FF YT +GS+ ML+ + LY + +
Sbjct: 143 YILFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFVGSVFMLLGIFQLYSSVGTTDYQA 202
Query: 351 LSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLG 410
L +L I+ Q W+F FF++ A+KIP P H WLP AHVEAP GSVILA I+LKLG
Sbjct: 203 LLNIELPIST--QKWIFAGFFLSLAVKIPQVPFHIWLPQAHVEAPVSGSVILAGILLKLG 260
Query: 411 CYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVT 470
YG LRF+ PI P A+ YF+ +I LS+I+IIY SL Q+D+K+LIAYSS+AHMG VT
Sbjct: 261 GYGFLRFTWPILPAATEYFAPFVIMLSVIAIIYGSLTTCRQVDLKRLIAYSSVAHMGLVT 320
Query: 471 LGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVF 530
LG+F T + A+ M++H L+SSA+FI++ +LY + TRLI + GI +P F
Sbjct: 321 LGLFTHTIEGLVAAVFMMLAHGLVSSALFIAVTYLYERHHTRLIKYYRGITFSMPIFVSV 380
Query: 531 FIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F++ +L N ++P + F+ EF +L+A ++N IGVL +T +++SAAYSL L + F
Sbjct: 381 FLVLTLTNMAIPLSCNFVAEFFSLLAAFEYNIVIGVLAATGMVWSAAYSLYLYNRVSF 438
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 593 MIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISI 652
M + S +LL Y+ E + + + +LI + A+ +F + S FML GI
Sbjct: 131 MGVFSALDLLLFYILFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFVGSVFMLLGIFQ 190
Query: 653 LYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASI 712
LY GT + Q++ N+ + S + L+ K+ PFH+W+P + A +
Sbjct: 191 LYSSVGTTDYQALLNI----ELPISTQKWIFAGFFLSLAVKIPQVPFHIWLPQAHVEAPV 246
Query: 713 IITLLLSTTPKLSLFVIIYRLLIKCLLPLVINW-QKILLILAIFSLIIGNVSAITQYNFK 771
+++L+ L L + +LP + +++L++ ++I G+++ Q + K
Sbjct: 247 SGSVILAGI-LLKLGGYGFLRFTWPILPAATEYFAPFVIMLSVIAIIYGSLTTCRQVDLK 305
Query: 772 RMIAYSSIAHMGLMLFSIISIKTSHNNLIIF-----NSCDSGLFYIITYIF 817
R+IAYSS+AHMGL+ + + +F S LF +TY++
Sbjct: 306 RLIAYSSVAHMGLVTLGLFTHTIEGLVAAVFMMLAHGLVSSALFIAVTYLY 356
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Query: 50 KSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K Q P H WLP + +E P S ++ + G + P+ + + + +
Sbjct: 227 KIPQVPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFTWPILPAATEYFAPFVIML 286
Query: 109 AITAFFMGLLGII-QNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKA 164
++ A G L Q D+KR+IAYS+++ +G +T+GL + ++F ++ H +
Sbjct: 287 SVIAIIYGSLTTCRQVDLKRLIAYSSVAHMGLVTLGLFTHTIEGLVAAVFMMLAHGLVSS 346
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LF+ A + + H + I+ G+ MPI L+ L+ + P F ++
Sbjct: 347 ALFI-AVTYLYERHHTRLIKYYRGITFSMPIFVSVFLVLTLTNMAIPLSCNFVAE 400
>sp|B3R3Y0|NUON_CUPTR NADH-quinone oxidoreductase subunit N OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=nuoN PE=3 SV=1
Length = 491
Score = 289 bits (740), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 144/313 (46%), Positives = 224/313 (71%), Gaps = 1/313 (0%)
Query: 591 GQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGI 650
GQ++MI+GNN L++YLGLEL+SL+ L+A ++ + +SE+A+KYF+LG L+SGF+LYGI
Sbjct: 118 GQIVMITGNNFLTLYLGLELLSLSSYALVALRRESRVTSESAMKYFVLGALASGFLLYGI 177
Query: 651 SILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGA 710
S++YG TG+L L +F ++ IN ++LA ++ I+ GLSFKLG +PFHMW+PD+YQG+
Sbjct: 178 SMMYGATGSLNLGEVFRAVESGRINTTMLAFGVVFIVAGLSFKLGAAPFHMWIPDIYQGS 237
Query: 711 SIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNF 770
+TLL++ PK++ F + R+L++ LLPL +WQ +L++L+I SL IGN++AI Q N
Sbjct: 238 PTAVTLLIAGGPKVAAFALFIRVLVEGLLPLASDWQMMLVVLSIISLAIGNLTAIVQSNL 297
Query: 771 KRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLK 830
KRM+AYS+I+HMG +L ++S ++ ++ S +FY +TY+ LG FG IILL+
Sbjct: 298 KRMLAYSTISHMGFVLLGLLSGVVANKADGAADAYSSAMFYSVTYLLTTLGTFG-IILLR 356
Query: 831 NNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIW 890
+ + + L+ G+ +RNPW A +M++ MFSLAG PPT+GFYAK + + + + W
Sbjct: 357 TSKGFEAETLEDLKGMSRRNPWFAFLMLVMMFSLAGIPPTVGFYAKLAVLDAVVQAGMTW 416
Query: 891 LLLLIIMCSLIGA 903
L ++ ++ SLIGA
Sbjct: 417 LAVVAVLFSLIGA 429
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 132/273 (48%), Gaps = 46/273 (16%)
Query: 316 SYAAIKFFLYTLMGS--LLMLISMIYLYYIS---NKSFNILSWHQLSITKIEQIWLFITF 370
S +A+K+F+ + S LL ISM+Y S + F + +++ T + +FI
Sbjct: 156 SESAMKYFVLGALASGFLLYGISMMYGATGSLNLGEVFRAVESGRINTTMLAFGVVFIVA 215
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA--------AIMLKLGCYGLLRFSLPIF 422
++F K+ P H W+PD + +PT ++++A A+ +++ GLL P+
Sbjct: 216 GLSF--KLGAAPFHMWIPDIYQGSPTAVTLLIAGGPKVAAFALFIRVLVEGLL----PLA 269
Query: 423 PDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQ 482
D + +++ LS+IS+ +L A+VQ ++K+++AYS+I+HMGFV LG+ +
Sbjct: 270 SD----WQMMLVVLSIISLAIGNLTAIVQSNLKRMLAYSTISHMGFVLLGL-------LS 318
Query: 483 GAIIQMISHA--LISSAMFISIGFLYNQMKT--------------RLISNFGGIINVIPH 526
G + A SSAMF S+ +L + T + + G+ P
Sbjct: 319 GVVANKADGAADAYSSAMFYSVTYLLTTLGTFGIILLRTSKGFEAETLEDLKGMSRRNPW 378
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
F+ ++ + +P T GF + ++ + V+
Sbjct: 379 FAFLMLVMMFSLAGIPPTVGFYAKLAVLDAVVQ 411
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 55 PLHTWLPDSMEG-PTPASALIHAATMVTA-GIFMITRMSPLFELSNTALSIILFIGAITA 112
P H W+PD +G PT + LI V A +F+ + L L++ +++ + I+
Sbjct: 225 PFHMWIPDIYQGSPTAVTLLIAGGPKVAAFALFIRVLVEGLLPLASDWQMMLVVLSIISL 284
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-----------GVSAYTVSIFHLMTHAF 161
L I+Q+++KR++AYST+S +G++ +GL AY+ ++F+ +T+
Sbjct: 285 AIGNLTAIVQSNLKRMLAYSTISHMGFVLLGLLSGVVANKADGAADAYSSAMFYSVTYLL 344
Query: 162 FKALLFLSAGSIIINMKHN---QDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
F G I++ + + ++ G+ + P L+ + SL G P GFY+
Sbjct: 345 TTLGTF---GIILLRTSKGFEAETLEDLKGMSRRNPWFAFLMLVMMFSLAGIPPTVGFYA 401
Query: 219 K 219
K
Sbjct: 402 K 402
>sp|Q0H8X6|NU4M_USTMA NADH-ubiquinone oxidoreductase chain 4 OS=Ustilago maydis (strain
521 / FGSC 9021) GN=ND4 PE=3 SV=1
Length = 484
Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/358 (44%), Positives = 234/358 (65%), Gaps = 6/358 (1%)
Query: 235 LGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLILSGLIIGAFCALDGMLFY 293
+G+DG+SL+F+ LT FIT I IL + D IK++L ++ FL+L L+I F LD +LFY
Sbjct: 75 IGVDGISLYFVLLTTFITPICILSNWDNIKEQLKYFLMCFLVLETLLIAVFVVLDILLFY 134
Query: 294 IFFEATLIPIFIIIGTWGGS-NRSYAAIKFFLYTLMGSLLMLISMIYLYY-ISNKSFNIL 351
+FFE+ LIP+F+I+G WGGS R AA FLYTL GSL ML++ + +YY + + F ++
Sbjct: 135 VFFESVLIPLFLIVGIWGGSATRVRAAFLLFLYTLFGSLFMLLAFLVIYYNVGSTDFQVV 194
Query: 352 SWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGC 411
S ++++ + +WL + FI+ AIK P+ P H WLP AH EAP GSVILA ++LKL
Sbjct: 195 SLSEINLESQKLLWLAV--FISMAIKTPLLPFHVWLPRAHAEAPLAGSVILAGLILKLAT 252
Query: 412 YGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTL 471
YG +R + PDA+ YFS L+ T+++I++IY SL + Q D K L+AYSSI HM V L
Sbjct: 253 YGYMRILIQFLPDATSYFSPLVQTIAVITLIYASLATLRQTDFKALVAYSSIGHMAVVVL 312
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISI-GFLYNQMKTRLISNFGGIINVIPHFSVF 530
G+F T I GA++ I+H ++S A+FI + G LY++ TR I + G+ +P FS+
Sbjct: 313 GLFSNTIQGIDGALLLSIAHGVVSPALFILVGGVLYDRYHTRTIRYYRGMTAYMPLFSIM 372
Query: 531 FIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F +F++ N ++P ++ + GEF+ + A + N VL ST ++ SAAYS+ L I F
Sbjct: 373 FFVFTIFNAAVPLSANWAGEFLCLAGAFQRNPVFAVLGSTGIVLSAAYSIWLYNRIAF 430
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
AA F+ + S FML ++Y G+ + F V+ L+ IN L L + +
Sbjct: 159 RAAFLLFLYTLFGSLFMLLAFLVIYYNVGSTD----FQVVSLSEINLESQKLLWLAVFIS 214
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
++ K + PFH+W+P + A + +++L+ KL+ + + R+LI+ L + +
Sbjct: 215 MAIKTPLLPFHVWLPRAHAEAPLAGSVILAGLILKLATYGYM-RILIQFLPDATSYFSPL 273
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
+ +A+ +LI +++ + Q +FK ++AYSSI HM +++ + S
Sbjct: 274 VQTIAVITLIYASLATLRQTDFKALVAYSSIGHMAVVVLGLFS 316
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTAL--SIILFI 107
K+ P H WLP + A ++I A ++ + R+ F T+ ++ I
Sbjct: 218 KTPLLPFHVWLPRAHAEAPLAGSVILAGLILKLATYGYMRILIQFLPDATSYFSPLVQTI 277
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKA 164
IT + L + Q D K ++AYS++ + + +GL + ++ + H
Sbjct: 278 AVITLIYASLATLRQTDFKALVAYSSIGHMAVVVLGLFSNTIQGIDGALLLSIAHGVVSP 337
Query: 165 LLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCI 198
LF+ G ++ + H + IR G+ YMP+ I
Sbjct: 338 ALFILVGGVLYDRYHTRTIRYYRGMTAYMPLFSI 371
>sp|C6XAK0|NUON_METSD NADH-quinone oxidoreductase subunit N OS=Methylovorus sp. (strain
SIP3-4) GN=nuoN PE=3 SV=1
Length = 483
Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/315 (44%), Positives = 212/315 (67%), Gaps = 9/315 (2%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LG MIM+SG + L++Y+GLEL+SL L L+A ++N ++EAA+KYF+LG LSSG +LY
Sbjct: 117 LLGMMIMVSGQHFLTLYMGLELLSLCLYALVAMDRDNPRATEAAMKYFVLGALSSGMLLY 176
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
G+S+LYG+TGTL++ + N + + +VL L ++ +I GL FKLG PF MWVPDVY
Sbjct: 177 GMSMLYGVTGTLDVAEVANALLQGAPDHAVLVLGVVFLIAGLGFKLGAVPFQMWVPDVYH 236
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TL + + KL+ F + RLLI+ L L I+WQ +L I+A+ S++IGN++AI Q
Sbjct: 237 GAPTAVTLFIGSVTKLAAFAFMIRLLIQGLYVLAIDWQGMLAIMAVLSILIGNITAIAQT 296
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM+AYS+I+H+G +L+ +S T N S +FYI+ Y+ LG FG+++L
Sbjct: 297 NLKRMLAYSTISHVGYLLYGFMSAGT--------NGYVSAMFYIMAYVLMTLGGFGIMLL 348
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L + D L+ GL+QR+PW A +M+I MFS+AG PPT+GFYAKF + + +
Sbjct: 349 LSRKGF-EADNLEDLKGLNQRSPWYAFLMLIIMFSMAGVPPTLGFYAKFAVLQAALQAGF 407
Query: 889 IWLLLLIIMCSLIGA 903
+ L++ ++ + IG
Sbjct: 408 VGLVIFAVVMAAIGG 422
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Query: 40 FLINRIGAMAKSAQFPLHTWLPDSMEG-PTPASALIHAATMVTAGIFMITRM-SPLFELS 97
FLI +G K P W+PD G PT + I + T + A FMI + L+ L+
Sbjct: 213 FLIAGLGF--KLGAVPFQMWVPDVYHGAPTAVTLFIGSVTKLAAFAFMIRLLIQGLYVLA 270
Query: 98 NTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIF 154
++ + ++ + I Q ++KR++AYST+S +GY+ G G + Y ++F
Sbjct: 271 IDWQGMLAIMAVLSILIGNITAIAQTNLKRMLAYSTISHVGYLLYGFMSAGTNGYVSAMF 330
Query: 155 H-----LMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
+ LMT F +L LS ++ ++ GL + P LI + S+ G
Sbjct: 331 YIMAYVLMTLGGFGIMLLLSRKGF-----EADNLEDLKGLNQRSPWYAFLMLIIMFSMAG 385
Query: 210 APFFSGFYSK 219
P GFY+K
Sbjct: 386 VPPTLGFYAK 395
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 122/252 (48%), Gaps = 8/252 (3%)
Query: 318 AAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQ---IWLFITFFIA- 373
AA+K+F+ + S ++L M LY ++ + ++ + + L + F IA
Sbjct: 159 AAMKYFVLGALSSGMLLYGMSMLYGVTG-TLDVAEVANALLQGAPDHAVLVLGVVFLIAG 217
Query: 374 FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG-LLRFSLPIFPDASYYFSNL 432
K+ P W+PD + APT ++ + ++ KL + ++R + + + +
Sbjct: 218 LGFKLGAVPFQMWVPDVYHGAPTAVTLFIGSVT-KLAAFAFMIRLLIQGLYVLAIDWQGM 276
Query: 433 IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHA 492
+ ++++SI+ ++ A+ Q ++K+++AYS+I+H+G++ G A+ ++++
Sbjct: 277 LAIMAVLSILIGNITAIAQTNLKRMLAYSTISHVGYLLYGFMSAGTNGYVSAMFYIMAYV 336
Query: 493 LISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEF 551
L++ F + L + + + + G+ P ++ +I + +P T GF +F
Sbjct: 337 LMTLGGFGIMLLLSRKGFEADNLEDLKGLNQRSPWYAFLMLIIMFSMAGVPPTLGFYAKF 396
Query: 552 MIILSAVKFNFC 563
++ +A++ F
Sbjct: 397 AVLQAALQAGFV 408
>sp|Q47HG3|NUON_DECAR NADH-quinone oxidoreductase subunit N OS=Dechloromonas aromatica
(strain RCB) GN=nuoN PE=3 SV=1
Length = 494
Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 228/336 (67%), Gaps = 8/336 (2%)
Query: 590 LGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYG 649
LG M+MIS N+ L+IY+GLEL+SL+L ++A ++++ S+EAA+KYF+LG L+SG +LYG
Sbjct: 120 LGMMVMISANHFLTIYIGLELLSLSLYAMVAMNRDSVVSTEAAMKYFVLGALASGLLLYG 179
Query: 650 ISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQG 709
+S++YG TGTLE+ I + +N SVL L+ ++ GL+FKLG+ PFHMW+PDVYQG
Sbjct: 180 MSMIYGATGTLEITGIAERLYGGGVNKSVLVFGLVFLVAGLAFKLGVVPFHMWIPDVYQG 239
Query: 710 ASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYN 769
A +TL + + PKL+ F I+ RLL+ L+ L +WQ +L+IL++ S+ IGN++AI Q N
Sbjct: 240 APTSVTLFIGSAPKLAAFAIVIRLLVNGLITLAADWQAMLVILSVLSMAIGNLAAIAQTN 299
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
KRM+AYS+I+HMG ML I++ + N+ S +FY+I+Y+ G FG +IL+
Sbjct: 300 LKRMLAYSAISHMGFMLLGIVTGVVGGDARYALNAYSSSMFYVISYVLMSAGTFG-MILM 358
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK- 888
+ + +ELD + GL++R+PW A IM++ MFS+AG P IGF+AKF + + +
Sbjct: 359 MSRAGFEAEELDDYKGLNKRSPWFAGIMLMLMFSMAGVPFFIGFFAKFSVLQAVVAAGPG 418
Query: 889 -IWLLLLIIMCSLIGA-KGGRIIK----DCPGVGSP 918
+WL ++ ++ SLIGA R++K D P +P
Sbjct: 419 YMWLAIVAVLFSLIGAFYYLRVVKLMYFDAPADETP 454
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 55 PLHTWLPDSMEG-PTPASALIHAATMVTA-GIFMITRMSPLFELSNTALSIILFIGAITA 112
P H W+PD +G PT + I +A + A I + ++ L L+ ++++ + ++
Sbjct: 228 PFHMWIPDVYQGAPTSVTLFIGSAPKLAAFAIVIRLLVNGLITLAADWQAMLVILSVLSM 287
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL-----------GVSAYTVSIFHLMTHAF 161
L I Q ++KR++AYS +S +G+M +G+ ++AY+ S+F+++++
Sbjct: 288 AIGNLAAIAQTNLKRMLAYSAISHMGFMLLGIVTGVVGGDARYALNAYSSSMFYVISYVL 347
Query: 162 FKALLFLSAGSIIINMK---HNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYS 218
A F G I++ + +++ + GL K P L+ + S+ G PFF GF++
Sbjct: 348 MSAGTF---GMILMMSRAGFEAEELDDYKGLNKRSPWFAGIMLMLMFSMAGVPFFIGFFA 404
Query: 219 K 219
K
Sbjct: 405 K 405
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 105/212 (49%), Gaps = 30/212 (14%)
Query: 368 ITFFIA-FAIKIPIWPMHTWLPDAHVEAPTEGSVILA--------AIMLKLGCYGLLRFS 418
+ F +A A K+ + P H W+PD + APT ++ + AI+++L GL+ +
Sbjct: 213 LVFLVAGLAFKLGVVPFHMWIPDVYQGAPTSVTLFIGSAPKLAAFAIVIRLLVNGLITLA 272
Query: 419 LPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTK 478
+ +++ LS++S+ +L A+ Q ++K+++AYS+I+HMGF+ LGI +T
Sbjct: 273 AD--------WQAMLVILSVLSMAIGNLAAIAQTNLKRMLAYSAISHMGFMLLGI--VTG 322
Query: 479 I----------SIQGAIIQMISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHF 527
+ + ++ +IS+ L+S+ F I + + + ++ G+ P F
Sbjct: 323 VVGGDARYALNAYSSSMFYVISYVLMSAGTFGMILMMSRAGFEAEELDDYKGLNKRSPWF 382
Query: 528 SVFFIIFSLANCSLPGTSGFIGEFMIILSAVK 559
+ ++ + +P GF +F ++ + V
Sbjct: 383 AGIMLMLMFSMAGVPFFIGFFAKFSVLQAVVA 414
>sp|A1VM73|NUON_POLNA NADH-quinone oxidoreductase subunit N OS=Polaromonas
naphthalenivorans (strain CJ2) GN=nuoN PE=3 SV=1
Length = 500
Score = 279 bits (714), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 220/318 (69%), Gaps = 4/318 (1%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LG +MISG+N L +Y+GLELM+L L+A ++++ ++EAA+KYF+LG L+SGF+LY
Sbjct: 117 LLGMFVMISGHNFLVLYMGLELMTLCSYALVALRRDDAQATEAAMKYFVLGALASGFLLY 176
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
G+S+LYG TG+L + +FN I + VL L+ I+ GL+FKLG PFHMW+PDVYQ
Sbjct: 177 GLSMLYGATGSLNINEVFNAIASRQVKHQVLVFGLVFIVAGLAFKLGAVPFHMWLPDVYQ 236
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TL++ P+L+ F + RLL++ LLPL I+WQ++L ++AI SL+IGN++A+ Q
Sbjct: 237 GAPTAVTLIIGGAPQLAAFAMTIRLLVEGLLPLAIDWQQMLALMAIGSLVIGNLAAVAQT 296
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM+A+S+I+ MG +L +++ + N L ++ + +FY +TY+ L AFG+I+L
Sbjct: 297 NLKRMLAFSTISQMGFLLLGLLAGVVNGNQLHTESAYGAAMFYALTYVLTTLAAFGIILL 356
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET-Q 887
L ++++E+ GL+QR+P A +M + MFSLAG PP +GFYAK + + + + Q
Sbjct: 357 LA-RAGHESEEITDLSGLNQRSPLYAGVMAMSMFSLAGLPPLVGFYAKLGVLQALISSGQ 415
Query: 888 KIWLLLLI--IMCSLIGA 903
+L+L + + SLIGA
Sbjct: 416 TSYLVLAVFAVFMSLIGA 433
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRM--SPLFELSNTALSIILFI 107
K P H WLPD +G A LI A M R+ L L+ ++ +
Sbjct: 221 KLGAVPFHMWLPDVYQGAPTAVTLIIGGAPQLAAFAMTIRLLVEGLLPLAIDWQQMLALM 280
Query: 108 GAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGLGV-----------SAYTVSIFH 155
AI + +G L + Q ++KR++A+ST+SQ+G++ +GL SAY ++F+
Sbjct: 281 -AIGSLVIGNLAAVAQTNLKRMLAFSTISQMGFLLLGLLAGVVNGNQLHTESAYGAAMFY 339
Query: 156 LMTH------AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVG 209
+T+ AF LL AG +++I ++ GL + P+ + + SL G
Sbjct: 340 ALTYVLTTLAAFGIILLLARAG------HESEEITDLSGLNQRSPLYAGVMAMSMFSLAG 393
Query: 210 APFFSGFYSK 219
P GFY+K
Sbjct: 394 LPPLVGFYAK 403
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 86/169 (50%), Gaps = 27/169 (15%)
Query: 313 SNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS-----NKSFNILSWHQLSITKIEQIWLF 367
+ + AA+K+F+ + S +L + LY + N+ FN ++ Q+ Q+ +F
Sbjct: 154 AQATEAAMKYFVLGALASGFLLYGLSMLYGATGSLNINEVFNAIASRQVK----HQVLVF 209
Query: 368 ITFFI--AFAIKIPIWPMHTWLPDAHVEAPTEGSVILA--------AIMLKLGCYGLLRF 417
FI A K+ P H WLPD + APT ++I+ A+ ++L GLL
Sbjct: 210 GLVFIVAGLAFKLGAVPFHMWLPDVYQGAPTAVTLIIGGAPQLAAFAMTIRLLVEGLL-- 267
Query: 418 SLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM 466
P+ D + ++ +++ S++ +L A+ Q ++K+++A+S+I+ M
Sbjct: 268 --PLAID----WQQMLALMAIGSLVIGNLAAVAQTNLKRMLAFSTISQM 310
>sp|Q9I0J0|NUOM_PSEAE NADH-quinone oxidoreductase subunit M OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=nuoM PE=3 SV=1
Length = 509
Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 250/398 (62%), Gaps = 12/398 (3%)
Query: 203 GLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-D 261
G L AP ++ K +WI+ I L +DGLSL + LT + ++ +L S +
Sbjct: 50 GDFQLAPAPGGEPEWTLQFKVLWIERLGISIHLAMDGLSLLMVALTGLLGVLSVLCSWNE 109
Query: 262 IKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSN------R 315
I++++ + L + G +IG F A+D LF+ F+E L+P++ +I WG S+ R
Sbjct: 110 IQRRIGFFHLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTR 169
Query: 316 SYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIE-----QIWLFITF 370
YAA KFF++T L+ML++++ L +++ + ++++ ++ K + + L + F
Sbjct: 170 IYAATKFFIFTQASGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLGF 229
Query: 371 FIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFS 430
F+AFA+K+P+ P+H+WLPDAH +APT GSV LA I+LK YGL+RF+LP+FP+AS F+
Sbjct: 230 FVAFAVKMPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNASAEFA 289
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
+ + L +I I Y +L++ Q DIK+L+AYSS++HMGFV +GI+ +++++QG ++QMI+
Sbjct: 290 PIAMWLGIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQMIA 349
Query: 491 HALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGE 550
H L ++A+FI G LY ++ TR + GG+ + +P+ + F+ A+ LPGT F+GE
Sbjct: 350 HGLSAAALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNFVGE 409
Query: 551 FMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIF 588
F+I++ A K I V+ + L+F++ YSL + F
Sbjct: 410 FLILIGAFKVVPVIIVIATFGLVFASVYSLIMIHRAYF 447
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 55 PLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFIGAITA 112
P+H+WLPD+ + PT S + + TA +I PLF ++ + I +++G I
Sbjct: 241 PVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNASAEFAPIAMWLGIIGI 300
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYTVS----IFHLMTHAFFKALLFL 168
F+ LL Q DIKR++AYS++S +G++ +G+ S V+ + ++ H A LF+
Sbjct: 301 FYGALLSFAQTDIKRLVAYSSVSHMGFVMIGI-YSGSQVALQGVVVQMIAHGLSAAALFI 359
Query: 169 SAGSIIINMKHNQDIRNMGGLYKYMPITCITSL 201
G + + H +D+R MGGL+ MP SL
Sbjct: 360 LCGQLYERL-HTRDMRKMGGLWSRMPYLPAISL 391
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 136/331 (41%), Gaps = 54/331 (16%)
Query: 585 NIIFVLGQMIMI-SGNNLLSIYLGLELMSLTLCVLIA--------SQKNNIFSSEAAIKY 635
N++++LG +I + +L + E+M + + LIA +K I+ AA K+
Sbjct: 120 NLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTRIY---AATKF 176
Query: 636 FILGILSSGFMLYGISIL----YGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLS 691
FI S ML I L + TG + + + ++ V L +L V +
Sbjct: 177 FIFTQASGLVMLVAILGLVFVNFNATGVITFD--YATLLKTQLSPHVEWLLMLGFFVAFA 234
Query: 692 FKLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVIN--- 744
K+ + P H W+PD + A T + L I+ + LI+ LPL N
Sbjct: 235 VKMPVVPVHSWLPDAHAQAP--------TAGSVDLAGILLKTAAYGLIRFALPLFPNASA 286
Query: 745 -WQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSI-----ISIKTSHNN 798
+ I + L I + G + + Q + KR++AYSS++HMG ++ I ++++
Sbjct: 287 EFAPIAMWLGIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQ 346
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMM 858
+I + LF + ++ L T ++ GL R P+ I +
Sbjct: 347 MIAHGLSAAALFILCGQLYERL---------------HTRDMRKMGGLWSRMPYLPAISL 391
Query: 859 IFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
F + G P T F +F I F+ +
Sbjct: 392 FFASASLGLPGTGNFVGEFLILIGAFKVVPV 422
>sp|Q82TV6|NUON_NITEU NADH-quinone oxidoreductase subunit N OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=nuoN PE=3 SV=1
Length = 481
Score = 273 bits (697), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 218/334 (65%), Gaps = 14/334 (4%)
Query: 590 LGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYG 649
LG M+M+S N+L+++YLGLEL+SL+L ++A Q+ + ++EAAIK+F+LG L+SGF+LYG
Sbjct: 117 LGMMVMVSANHLITLYLGLELLSLSLYAMVALQRESAIATEAAIKFFVLGALASGFLLYG 176
Query: 650 ISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQG 709
+S+LYG TGTL L + VI + + + L+ ++ G+ FKL PFHMW PD+Y+G
Sbjct: 177 MSMLYGATGTLHLPELAKVIHSGQADHEIFIIGLVFVVAGIGFKLSAVPFHMWAPDIYEG 236
Query: 710 ASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYN 769
A +TL + + PK + F + RLL+ L LV +WQ +L++LA+ S+ +GN++AI Q N
Sbjct: 237 APTAVTLFIGSAPKFAAFGFVMRLLVGGLGDLVTDWQGMLVLLAVASMAVGNIAAIAQQN 296
Query: 770 FKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILL 829
KRM+AYS+I+HMG +L I+ N S +FY+I Y+ LGAFG+I+L+
Sbjct: 297 IKRMLAYSTISHMGFVLLGFIAAGE--------NGYSSSMFYVIAYVLMTLGAFGIIMLV 348
Query: 830 KNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKI 889
+ D++ GL+QRNPW A +M++ MFS+AG PP IGFYAK + + + E I
Sbjct: 349 SREGF-EADKISDLKGLNQRNPWLAFMMLLVMFSMAGIPPMIGFYAKLSVLQAVLEAGYI 407
Query: 890 WLLLLIIMCSLIGA-KGGRIIK----DCPGVGSP 918
WL+++ +M SLIGA RIIK D P P
Sbjct: 408 WLVVVAVMLSLIGAFYYLRIIKFMYFDAPEQTQP 441
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAATMVTA-GIFMITRMSPLFELSNTALSIILFI 107
K + P H W PD EG PT + I +A A G M + L +L +++ +
Sbjct: 220 KLSAVPFHMWAPDIYEGAPTAVTLFIGSAPKFAAFGFVMRLLVGGLGDLVTDWQGMLVLL 279
Query: 108 GAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKA 164
+ + I Q +IKR++AYST+S +G++ +G G + Y+ S+F+++ +
Sbjct: 280 AVASMAVGNIAAIAQQNIKRMLAYSTISHMGFVLLGFIAAGENGYSSSMFYVIAY----V 335
Query: 165 LLFLSAGSIIINMKHN----QDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
L+ L A II+ + I ++ GL + P L+ + S+ G P GFY+K
Sbjct: 336 LMTLGAFGIIMLVSREGFEADKISDLKGLNQRNPWLAFMMLLVMFSMAGIPPMIGFYAK 394
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 123/258 (47%), Gaps = 22/258 (8%)
Query: 318 AAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKI-------EQIWLFITF 370
AAIKFF+ + S +L M LY + + H + K+ +I++
Sbjct: 158 AAIKFFVLGALASGFLLYGMSMLYGATG------TLHLPELAKVIHSGQADHEIFIIGLV 211
Query: 371 FIAFAI--KIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG-LLRFSLPIFPDASY 427
F+ I K+ P H W PD + APT ++ + + K +G ++R + D
Sbjct: 212 FVVAGIGFKLSAVPFHMWAPDIYEGAPTAVTLFIGSAP-KFAAFGFVMRLLVGGLGDLVT 270
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ +++ L++ S+ ++ A+ Q +IK+++AYS+I+HMGFV LG + ++
Sbjct: 271 DWQGMLVLLAVASMAVGNIAAIAQQNIKRMLAYSTISHMGFVLLGFIAAGENGYSSSMFY 330
Query: 488 MISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIP--HFSVFFIIFSLANCSLPGT 544
+I++ L++ F I + + + IS+ G+ P F + ++FS+A +P
Sbjct: 331 VIAYVLMTLGAFGIIMLVSREGFEADKISDLKGLNQRNPWLAFMMLLVMFSMAG--IPPM 388
Query: 545 SGFIGEFMIILSAVKFNF 562
GF + ++ + ++ +
Sbjct: 389 IGFYAKLSVLQAVLEAGY 406
>sp|Q31HE7|NUON_THICR NADH-quinone oxidoreductase subunit N OS=Thiomicrospira crunogena
(strain XCL-2) GN=nuoN PE=3 SV=1
Length = 478
Score = 272 bits (696), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 209/315 (66%), Gaps = 9/315 (2%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
VLG +M+S NL+++YLGLE+MSL L ++A +K+N + EAA+KYF+LG L++G +LY
Sbjct: 116 VLGMFVMVSAYNLITMYLGLEIMSLALYAMVAMRKDNQHALEAAMKYFVLGALATGMLLY 175
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
G S++YG TG+++ + +I N++ VL+ ++ I++GL+FKLG PFHMWVPDVY
Sbjct: 176 GFSMIYGATGSIQFDEMAQIIASGNVDNVVLSFGVVFIVIGLAFKLGAVPFHMWVPDVYH 235
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TL + T PK++ F ++YR+L++ L LV +WQ +++++++ SLI+G V + Q
Sbjct: 236 GAPTAVTLYIGTAPKIAAFAMLYRILVEGLPGLVEDWQSLIVMISVLSLIVGAVITLVQE 295
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KR++AYS I H+G +L II+ + + +FY I Y L FG+I+
Sbjct: 296 NLKRLLAYSGIGHIGFILLGIIAANP--------DGYSAAMFYTIVYSITALAGFGMIVA 347
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L T N+ D + F G+++RNPW AL+M+ MFS+AG PP +GFYAK + E++ +
Sbjct: 348 LA-RTNNEFDLVADFKGMNKRNPWLALMMLFIMFSMAGIPPFVGFYAKVVVIEEVVQAGF 406
Query: 889 IWLLLLIIMCSLIGA 903
WL +L ++ ++I A
Sbjct: 407 TWLAVLAVVMAVISA 421
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 372 IAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLL-RFSLPIFPDASYYFS 430
I A K+ P H W+PD + APT ++ + K+ + +L R + P +
Sbjct: 215 IGLAFKLGAVPFHMWVPDVYHGAPTAVTLYIGT-APKIAAFAMLYRILVEGLPGLVEDWQ 273
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
+LI+ +S++S+I ++I +VQ ++K+L+AYS I H+GF+ LGI A+ I
Sbjct: 274 SLIVMISVLSLIVGAVITLVQENLKRLLAYSGIGHIGFILLGIIAANPDGYSAAMFYTIV 333
Query: 491 HALISSA---MFISIGFLYNQMKTRLISNFGGIINVIPHFS--VFFIIFSLANCSLPGTS 545
+++ + A M +++ N+ L+++F G+ P + + FI+FS+A +P
Sbjct: 334 YSITALAGFGMIVALARTNNEFD--LVADFKGMNKRNPWLALMMLFIMFSMAG--IPPFV 389
Query: 546 GFIGEFMIILSAVKFNFC-IGVLTSTALIFSAAYSLCLSKNIIF 588
GF + ++I V+ F + VL + SA Y L + K + F
Sbjct: 390 GFYAKVVVIEEVVQAGFTWLAVLAVVMAVISAFYYLRVVKVMYF 433
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 60/272 (22%)
Query: 4 NLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINR------------------- 44
NL ++LG EI+ +A Y ++ D A+ A +K F++
Sbjct: 127 NLITMYLGLEIMSLALYAMVAMRKDNQHALEAAMKYFVLGALATGMLLYGFSMIYGATGS 186
Query: 45 ----------------------------IGAMAKSAQFPLHTWLPDSMEG-PTPASALIH 75
IG K P H W+PD G PT + I
Sbjct: 187 IQFDEMAQIIASGNVDNVVLSFGVVFIVIGLAFKLGAVPFHMWVPDVYHGAPTAVTLYIG 246
Query: 76 AATMVTAGIFMITR--MSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYST 133
A + A M+ R + L L S+I+ I ++ ++ ++Q ++KR++AYS
Sbjct: 247 TAPKI-AAFAMLYRILVEGLPGLVEDWQSLIVMISVLSLIVGAVITLVQENLKRLLAYSG 305
Query: 134 LSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQD---IRNMG 187
+ +G++ +G+ Y+ ++F+ + ++ F G I+ + N + + +
Sbjct: 306 IGHIGFILLGIIAANPDGYSAAMFYTIVYSITALAGF---GMIVALARTNNEFDLVADFK 362
Query: 188 GLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
G+ K P + L + S+ G P F GFY+K
Sbjct: 363 GMNKRNPWLALMMLFIMFSMAGIPPFVGFYAK 394
>sp|Q37375|NU4M_ACACA NADH-ubiquinone oxidoreductase chain 4 OS=Acanthamoeba castellanii
GN=ND4 PE=3 SV=1
Length = 497
Score = 270 bits (689), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 162/375 (43%), Positives = 247/375 (65%), Gaps = 5/375 (1%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLD-IKKKLAEYMSAFLI 275
Y+ K W+ +N +Y +G+D +SL F+ LT F+T I ILIS + IK + ++ +
Sbjct: 71 YNFQFYKQWLFLYNFHYVIGMDNISLLFLLLTFFLTPICILISWNSIKYRYNSFIICLIF 130
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRS-YAAIKFFLYTLMGSLLML 334
++ ++ FC LD + FYIFFE+ LIP+FI+IG WG R +A + F YTL+GSLLML
Sbjct: 131 ITFILFNIFCVLDLVFFYIFFESILIPMFILIGVWGSRQRKIHAVYQLFFYTLLGSLLML 190
Query: 335 ISMIYLY-YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
+ ++ +Y +I +L + + + Q+ L+ +FF AF +K+P++P H WLP+AHVE
Sbjct: 191 LGILVIYSHIQTTDIRVL--YNTNFSFYRQLILWASFFFAFCVKVPLFPFHIWLPEAHVE 248
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSVILA ++LKLG YGLLRF +PIF DA+Y+F L+ TL L+ IIY + Q+D
Sbjct: 249 APTVGSVILAGVLLKLGTYGLLRFVIPIFCDATYFFLPLVYTLCLLGIIYTCCSTIRQVD 308
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
+KK+IAY+S++HM FV LG+F I G++ M+SH ++SS +F IG +Y++ KTR+
Sbjct: 309 LKKVIAYASVSHMSFVILGLFTSNIQGIGGSVFLMLSHGIVSSGLFFCIGCVYDRYKTRI 368
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
+ + G+++ +P FS+ I L+N S PGTS FIGEF+I+L + N ++ + ++I
Sbjct: 369 LRYYSGLVSTMPIFSLCLFILILSNISFPGTSSFIGEFLILLGLFENNHFAALIATFSII 428
Query: 574 FSAAYSLCLSKNIIF 588
+A YS+ L IIF
Sbjct: 429 LTAVYSIWLYNRIIF 443
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 49 AKSAQFPLHTWLPDS-MEGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIIL 105
K FP H WLP++ +E PT S ++ A ++ G + + R P+F + + L ++
Sbjct: 231 VKVPLFPFHIWLPEAHVEAPTVGSVIL-AGVLLKLGTYGLLRFVIPIFCDATYFFLPLVY 289
Query: 106 FIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFF 162
+ + + I Q D+K++IAY+++S + ++ +GL + S+F +++H
Sbjct: 290 TLCLLGIIYTCCSTIRQVDLKKVIAYASVSHMSFVILGLFTSNIQGIGGSVFLMLSHGIV 349
Query: 163 KALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
+ LF G + K + +R GL MPI + I +LS + P S F
Sbjct: 350 SSGLFFCIGCVYDRYK-TRILRYYSGLVSTMPIFSLCLFILILSNISFPGTSSF 402
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 693 KLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKILLI 751
K+ + PFH+W+P+ + A + +++L+ KL + ++ R +I + ++
Sbjct: 232 KVPLFPFHIWLPEAHVEAPTVGSVILAGVLLKLGTYGLL-RFVIPIFCDATYFFLPLVYT 290
Query: 752 LAIFSLIIGNVSAITQYNFKRMIAYSSIAHM-----GLMLFSIISIKTSHNNLIIFNSCD 806
L + +I S I Q + K++IAY+S++HM GL +I I S ++
Sbjct: 291 LCLLGIIYTCCSTIRQVDLKKVIAYASVSHMSFVILGLFTSNIQGIGGSVFLMLSHGIVS 350
Query: 807 SGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAG 866
SGLF+ I ++ KT L + GL P +L + I + S
Sbjct: 351 SGLFFCIGCVY---------------DRYKTRILRYYSGLVSTMPIFSLCLFILILSNIS 395
Query: 867 FPPTIGFYAKFFIFEKIFETQK 888
FP T F +F I +FE
Sbjct: 396 FPGTSSFIGEFLILLGLFENNH 417
>sp|A1K5C1|NUON_AZOSB NADH-quinone oxidoreductase subunit N OS=Azoarcus sp. (strain BH72)
GN=nuoN PE=3 SV=1
Length = 491
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 224/338 (66%), Gaps = 6/338 (1%)
Query: 586 IIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGF 645
++ LG M+M++ N+LLS+Y+GLELMSL+L L+A +++ +EAA+KYF+LG L+SG
Sbjct: 113 LLMTLGMMVMVTSNHLLSMYIGLELMSLSLYALVAFDRDSARGTEAAMKYFVLGALASGL 172
Query: 646 MLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPD 705
+LYG+S+LYG TGTLE+ I + N +VL L+ ++ G+ FKLG+ PFHMW+PD
Sbjct: 173 LLYGMSMLYGATGTLEISGIAKSVYNQAANDTVLLFGLVFLMAGICFKLGVVPFHMWIPD 232
Query: 706 VYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAI 765
VY GA+ +TL+++T PKL+ F + RLL+ L + +WQ +L+ +A+ S+++GN++AI
Sbjct: 233 VYHGANTAVTLIIATAPKLAAFAMAVRLLVWGLFDVAEHWQTMLMFVAVLSIVLGNLAAI 292
Query: 766 TQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
Q N KRM+AYS I+HMG ML ++S + ++ + +FY I+Y+ L +FG+
Sbjct: 293 AQTNLKRMLAYSGISHMGFMLLGLLSGVVDGDPHYALDAYSAAMFYAISYVIMSLASFGM 352
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
IILL + + + +D F GL++R+PW A +MM MFS+AG P IGF+AK + + +
Sbjct: 353 IILL-SRAGFEAENIDDFKGLNKRSPWFAAMMMFVMFSMAGIPFFIGFFAKLAVLQAVVA 411
Query: 886 TQKIWLLLLIIMCSLIGA-KGGRIIK----DCPGVGSP 918
IW+ ++ ++ S+IGA R++K D P +P
Sbjct: 412 AGYIWVAVVAVLMSVIGAFYYLRLVKVMYFDEPADATP 449
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 70/283 (24%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLIN------------------ 43
SN+L +++G E++ ++ Y L+ F D A +K F++
Sbjct: 125 SNHLLSMYIGLELMSLSLYALVAFDRDSARGTEAAMKYFVLGALASGLLLYGMSMLYGAT 184
Query: 44 ---RIGAMAKSAQ--------------------------FPLHTWLPDSMEGPTPASALI 74
I +AKS P H W+PD G A LI
Sbjct: 185 GTLEISGIAKSVYNQAANDTVLLFGLVFLMAGICFKLGVVPFHMWIPDVYHGANTAVTLI 244
Query: 75 HAATMVTAGIFMITRMS--PLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
A A M R+ LF+++ ++++F+ ++ L I Q ++KR++AYS
Sbjct: 245 IATAPKLAAFAMAVRLLVWGLFDVAEHWQTMLMFVAVLSIVLGNLAAIAQTNLKRMLAYS 304
Query: 133 TLSQLGYMTVGL-----------GVSAYTVSIFH-----LMTHAFFKALLFLSAGSIIIN 176
+S +G+M +GL + AY+ ++F+ +M+ A F ++ LS
Sbjct: 305 GISHMGFMLLGLLSGVVDGDPHYALDAYSAAMFYAISYVIMSLASFGMIILLSRAGF--- 361
Query: 177 MKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
++I + GL K P + + S+ G PFF GF++K
Sbjct: 362 --EAENIDDFKGLNKRSPWFAAMMMFVMFSMAGIPFFIGFFAK 402
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 117/234 (50%), Gaps = 34/234 (14%)
Query: 377 KIPIWPMHTWLPDAHVEAPTEGSVILA--------AIMLKLGCYGLLRFSLPIFPDASYY 428
K+ + P H W+PD + A T ++I+A A+ ++L +GL D + +
Sbjct: 220 KLGVVPFHMWIPDVYHGANTAVTLIIATAPKLAAFAMAVRLLVWGLF--------DVAEH 271
Query: 429 FSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKI--------- 479
+ +++ ++++SI+ +L A+ Q ++K+++AYS I+HMGF+ LG+ L+ +
Sbjct: 272 WQTMLMFVAVLSIVLGNLAAIAQTNLKRMLAYSGISHMGFMLLGL--LSGVVDGDPHYAL 329
Query: 480 -SIQGAIIQMISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFS--VFFIIFS 535
+ A+ IS+ ++S A F I L + I +F G+ P F+ + F++FS
Sbjct: 330 DAYSAAMFYAISYVIMSLASFGMIILLSRAGFEAENIDDFKGLNKRSPWFAAMMMFVMFS 389
Query: 536 LANCSLPGTSGFIGEFMIILSAVKFNFC-IGVLTSTALIFSAAYSLCLSKNIIF 588
+A +P GF + ++ + V + + V+ + A Y L L K + F
Sbjct: 390 MAG--IPFFIGFFAKLAVLQAVVAAGYIWVAVVAVLMSVIGAFYYLRLVKVMYF 441
>sp|C1DCB6|NUON_LARHH NADH-quinone oxidoreductase subunit N OS=Laribacter hongkongensis
(strain HLHK9) GN=nuoN PE=3 SV=1
Length = 486
Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 212/317 (66%), Gaps = 13/317 (4%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LG +M+S +++L++Y+GLEL+SL L LIA + ++ ++EAA+KYF+LG L+SG +LY
Sbjct: 116 LLGMCVMVSASHMLTLYIGLELLSLALYALIALSRESVPATEAAMKYFVLGALASGLLLY 175
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
G+S++YG T +L + ++ I N N ++++L L+ I+ GL+FKLG PFHMWVPDVYQ
Sbjct: 176 GVSMVYGGTQSLHIVAVAQSIASGNANVTLVSLGLVFIVAGLAFKLGAVPFHMWVPDVYQ 235
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TL + + PKL+ FV + R L + L P + WQ +L++LAI SL++GN++AI Q
Sbjct: 236 GAPTAVTLFVGSAPKLAAFVFVIRFLAQALEPAAVAWQPMLILLAIASLVVGNLAAIMQT 295
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM+AYS+I+HMG ML I++ + + + +FY ITY+ L FGV++
Sbjct: 296 NIKRMLAYSTISHMGFMLIGILAATPAGYS--------AAMFYAITYMLMALAGFGVLLA 347
Query: 829 LKNN--TCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFET 886
L C D+L GL+++N W AL++++ MFS+AG PP +GFYAKF + E
Sbjct: 348 LSRAGFDCETLDDLK---GLNRKNAWYALLVLLVMFSMAGIPPLVGFYAKFAVLEAAVNV 404
Query: 887 QKIWLLLLIIMCSLIGA 903
WL ++ ++ SLIGA
Sbjct: 405 GLTWLAVVGVVMSLIGA 421
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K P H W+PD +G PT + + +A + A +F+I ++ E + A +L +
Sbjct: 220 KLGAVPFHMWVPDVYQGAPTAVTLFVGSAPKLAAFVFVIRFLAQALEPAAVAWQPMLILL 279
Query: 109 AITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFH-----LMTH 159
AI + +G L I+Q +IKR++AYST+S +G+M +G+ + Y+ ++F+ LM
Sbjct: 280 AIASLVVGNLAAIMQTNIKRMLAYSTISHMGFMLIGILAATPAGYSAAMFYAITYMLMAL 339
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A F LL LS + + ++ GL + + L+ + S+ G P GFY+K
Sbjct: 340 AGFGVLLALSRAGF-----DCETLDDLKGLNRKNAWYALLVLLVMFSMAGIPPLVGFYAK 394
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 132/267 (49%), Gaps = 23/267 (8%)
Query: 335 ISMIYLYYISNKSFNILSWHQLSITK----IEQIWLFITFFIA-FAIKIPIWPMHTWLPD 389
+SM+Y +S +I++ Q SI + + L + F +A A K+ P H W+PD
Sbjct: 177 VSMVY---GGTQSLHIVAVAQ-SIASGNANVTLVSLGLVFIVAGLAFKLGAVPFHMWVPD 232
Query: 390 AHVEAPTEGSVILAAIMLKLGCYG-LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIA 448
+ APT ++ + + KL + ++RF A+ + ++I L++ S++ +L A
Sbjct: 233 VYQGAPTAVTLFVGSAP-KLAAFVFVIRFLAQALEPAAVAWQPMLILLAIASLVVGNLAA 291
Query: 449 MVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMF-ISIGFLYN 507
++Q +IK+++AYS+I+HMGF+ +GI T A+ I++ L++ A F + +
Sbjct: 292 IMQTNIKRMLAYSTISHMGFMLIGILAATPAGYSAAMFYAITYMLMALAGFGVLLALSRA 351
Query: 508 QMKTRLISNFGGI--INVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNF--- 562
+ + G+ N V ++FS+A +P GF +F ++ +AV
Sbjct: 352 GFDCETLDDLKGLNRKNAWYALLVLLVMFSMAG--IPPLVGFYAKFAVLEAAVNVGLTWL 409
Query: 563 -CIGVLTSTALIFSAAYSLCLSKNIIF 588
+GV+ S + A Y L + K + F
Sbjct: 410 AVVGVVMS---LIGAFYYLRVVKAVYF 433
>sp|P0AFE8|NUOM_ECOLI NADH-quinone oxidoreductase subunit M OS=Escherichia coli (strain
K12) GN=nuoM PE=1 SV=1
Length = 509
Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
+ + WI F I L IDGLSL + LT + ++ +L S +I+K + +
Sbjct: 63 WQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMW 122
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWG-----GSNRSYAAIKFFLYTLMGS 330
+ G +IG F A+D LF+ F+E L+P++ +I WG G R AA KFF+YT
Sbjct: 123 ILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASG 182
Query: 331 LLMLISMIYLYYISNKSFNILSWHQLSI------TKIEQIWLFITFFIAFAIKIPIWPMH 384
L+MLI+++ L ++ + + +++ + + +E + L + FFIAFA+K+P+ P+H
Sbjct: 183 LVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYL-LMLGFFIAFAVKMPVVPLH 241
Query: 385 TWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYI 444
WLPDAH +APT GSV LA I+LK YGLLRFSLP+FP+AS F+ + + L +I I Y
Sbjct: 242 GWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYG 301
Query: 445 SLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGF 504
+ +A Q DIK+LIAY+S++HMGFV + I+ ++++ QGA+IQMI+H L ++ +FI G
Sbjct: 302 AWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQ 361
Query: 505 LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCI 564
LY ++ TR + GG+ + + + F++A +PGT F+GEFMI+ + + I
Sbjct: 362 LYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVI 421
Query: 565 GVLTSTALIFSAAYSLCLSKNIIF 588
V+++ L+F++ YSL + F
Sbjct: 422 TVISTFGLVFASVYSLAMLHRAYF 445
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
Query: 55 PLHTWLPDSM-EGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFIGAITA 112
PLH WLPD+ + PT S + + TA ++ PLF ++ + I +++G I
Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGI 298
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFKALLFLS 169
F+ + Q DIKR+IAY+++S +G++ + + AY ++ ++ H A LF+
Sbjct: 299 FYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFIL 358
Query: 170 AGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
G + + H +D+R MGGL+ M SL ++ +G P
Sbjct: 359 CGQLYERI-HTRDMRMMGGLWSKMKWLPALSLFFAVATLGMP 399
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 35/321 (10%)
Query: 585 NIIFVLGQMIMI-SGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSE----AAIKYFILG 639
N++++LG +I + ++ + E+M + + LIA + + AA K+FI
Sbjct: 119 NLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYT 178
Query: 640 ILSSGFMLYGISIL----YGITGTLELQSIFNVIKLNN--INCSVLALSLLLIIVGLSFK 693
S ML I L Y TG FN +L N ++ V L +L + + K
Sbjct: 179 QASGLVMLIAILALVFVHYNATGVWT----FNYEELLNTPMSSGVEYLLMLGFFIAFAVK 234
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKIL 749
+ + P H W+PD + A ++ L+ + L Y LL + LPL N + I
Sbjct: 235 MPVVPLHGWLPDAHSQAPTAGSVDLA---GILLKTAAYGLL-RFSLPLFPNASAEFAPIA 290
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
+ L + + G A Q + KR+IAY+S++HMG +L +I + + + +
Sbjct: 291 MWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYT-----GSQLAYQGA---- 341
Query: 810 FYIITYIFAILGAFGVIILLKNNTCN-KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
+I I L A G+ IL T ++ + GL + W + + F + G P
Sbjct: 342 --VIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMP 399
Query: 869 PTIGFYAKFFIFEKIFETQKI 889
T F +F I F+ +
Sbjct: 400 GTGNFVGEFMILFGSFQVVPV 420
>sp|P0AFE9|NUOM_ECO57 NADH-quinone oxidoreductase subunit M OS=Escherichia coli O157:H7
GN=nuoM PE=3 SV=1
Length = 509
Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%)
Query: 217 YSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISL-DIKKKLAEYMSAFLI 275
+ + WI F I L IDGLSL + LT + ++ +L S +I+K + +
Sbjct: 63 WQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMW 122
Query: 276 LSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWG-----GSNRSYAAIKFFLYTLMGS 330
+ G +IG F A+D LF+ F+E L+P++ +I WG G R AA KFF+YT
Sbjct: 123 ILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASG 182
Query: 331 LLMLISMIYLYYISNKSFNILSWHQLSI------TKIEQIWLFITFFIAFAIKIPIWPMH 384
L+MLI+++ L ++ + + +++ + + +E + L + FFIAFA+K+P+ P+H
Sbjct: 183 LVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYL-LMLGFFIAFAVKMPVVPLH 241
Query: 385 TWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYI 444
WLPDAH +APT GSV LA I+LK YGLLRFSLP+FP+AS F+ + + L +I I Y
Sbjct: 242 GWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYG 301
Query: 445 SLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGF 504
+ +A Q DIK+LIAY+S++HMGFV + I+ ++++ QGA+IQMI+H L ++ +FI G
Sbjct: 302 AWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQ 361
Query: 505 LYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCI 564
LY ++ TR + GG+ + + + F++A +PGT F+GEFMI+ + + I
Sbjct: 362 LYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVI 421
Query: 565 GVLTSTALIFSAAYSLCLSKNIIF 588
V+++ L+F++ YSL + F
Sbjct: 422 TVISTFGLVFASVYSLAMLHRAYF 445
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
Query: 55 PLHTWLPDSM-EGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALS-IILFIGAITA 112
PLH WLPD+ + PT S + + TA ++ PLF ++ + I +++G I
Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGI 298
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFKALLFLS 169
F+ + Q DIKR+IAY+++S +G++ + + AY ++ ++ H A LF+
Sbjct: 299 FYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFIL 358
Query: 170 AGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
G + + H +D+R MGGL+ M SL ++ +G P
Sbjct: 359 CGQLYERI-HTRDMRMMGGLWSKMKWLPALSLFFAVATLGMP 399
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 35/321 (10%)
Query: 585 NIIFVLGQMIMI-SGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSE----AAIKYFILG 639
N++++LG +I + ++ + E+M + + LIA + + AA K+FI
Sbjct: 119 NLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYT 178
Query: 640 ILSSGFMLYGISIL----YGITGTLELQSIFNVIKLNN--INCSVLALSLLLIIVGLSFK 693
S ML I L Y TG FN +L N ++ V L +L + + K
Sbjct: 179 QASGLVMLIAILALVFVHYNATGVWT----FNYEELLNTPMSSGVEYLLMLGFFIAFAVK 234
Query: 694 LGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVIN----WQKIL 749
+ + P H W+PD + A ++ L+ + L Y LL + LPL N + I
Sbjct: 235 MPVVPLHGWLPDAHSQAPTAGSVDLA---GILLKTAAYGLL-RFSLPLFPNASAEFAPIA 290
Query: 750 LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGL 809
+ L + + G A Q + KR+IAY+S++HMG +L +I + + + +
Sbjct: 291 MWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYT-----GSQLAYQGA---- 341
Query: 810 FYIITYIFAILGAFGVIILLKNNTCN-KTDELDIFIGLHQRNPWCALIMMIFMFSLAGFP 868
+I I L A G+ IL T ++ + GL + W + + F + G P
Sbjct: 342 --VIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMP 399
Query: 869 PTIGFYAKFFIFEKIFETQKI 889
T F +F I F+ +
Sbjct: 400 GTGNFVGEFMILFGSFQVVPV 420
>sp|B8GNZ8|NUON_THISH NADH-quinone oxidoreductase subunit N OS=Thioalkalivibrio sp.
(strain HL-EbGR7) GN=nuoN PE=3 SV=1
Length = 480
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/316 (46%), Positives = 214/316 (67%), Gaps = 10/316 (3%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
VLG MIMIS + L++YLGLEL+SL+L ++A +++ +SEAA+KYFILG ++SG +LY
Sbjct: 116 VLGMMIMISSYSFLTLYLGLELLSLSLYAMVAFNRDSARASEAAMKYFILGAIASGMLLY 175
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSV-LALSLLLIIVGLSFKLGISPFHMWVPDVY 707
G+SILYGITG+L+++ + + + + +V L +L +IVGL+FKLG PFHMWVPDVY
Sbjct: 176 GMSILYGITGSLDIKEVSDYLITSGAGLNVPLVFALSFVIVGLAFKLGAVPFHMWVPDVY 235
Query: 708 QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQ 767
GA +TL + T PKL+ II RLL+ L PL +WQ +L ILA+ SL +GNV AI Q
Sbjct: 236 HGAPTSVTLFIGTAPKLAGLAIIMRLLVDGLGPLHHDWQGMLTILAVLSLAVGNVVAIAQ 295
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
N KRM+AYS+I+H+G +L I++ +H + LFY + Y G FG+II
Sbjct: 296 TNIKRMLAYSTISHVGFILMGILA--GTHEG------YAAALFYTLVYAIVAAGGFGMII 347
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
LL + + LD F GL++R+PW A IM++ MFS+AG PPT+GFYAK + + + + +
Sbjct: 348 LLSRRGF-EAENLDDFRGLNERSPWFAFIMLLIMFSMAGVPPTVGFYAKLAVLQAVVQVE 406
Query: 888 KIWLLLLIIMCSLIGA 903
IWL + ++ S++GA
Sbjct: 407 MIWLAIFAVIFSIVGA 422
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 125/253 (49%), Gaps = 7/253 (2%)
Query: 313 SNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFI 372
+ S AA+K+F+ + S ++L M LY I+ S +I IT + + + F +
Sbjct: 153 ARASEAAMKYFILGAIASGMLLYGMSILYGITG-SLDIKEVSDYLITSGAGLNVPLVFAL 211
Query: 373 AF-----AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASY 427
+F A K+ P H W+PD + APT ++ + G ++R + +
Sbjct: 212 SFVIVGLAFKLGAVPFHMWVPDVYHGAPTSVTLFIGTAPKLAGLAIIMRLLVDGLGPLHH 271
Query: 428 YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQ 487
+ ++ L+++S+ +++A+ Q +IK+++AYS+I+H+GF+ +GI T A+
Sbjct: 272 DWQGMLTILAVLSLAVGNVVAIAQTNIKRMLAYSTISHVGFILMGILAGTHEGYAAALFY 331
Query: 488 MISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSG 546
+ +A++++ F I L + + + +F G+ P F+ ++ + +P T G
Sbjct: 332 TLVYAIVAAGGFGMIILLSRRGFEAENLDDFRGLNERSPWFAFIMLLIMFSMAGVPPTVG 391
Query: 547 FIGEFMIILSAVK 559
F + ++ + V+
Sbjct: 392 FYAKLAVLQAVVQ 404
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 21/188 (11%)
Query: 45 IGAMAKSAQFPLHTWLPDSMEG-PTPASALIHAATMVTAGIFMITRM-----SPLFELSN 98
+G K P H W+PD G PT + I A + AG+ +I R+ PL
Sbjct: 216 VGLAFKLGAVPFHMWVPDVYHGAPTSVTLFIGTAPKL-AGLAIIMRLLVDGLGPLHHDWQ 274
Query: 99 TALSIILFIGAITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIF 154
L+I+ A+ + +G ++ I Q +IKR++AYST+S +G++ +G+ Y ++F
Sbjct: 275 GMLTIL----AVLSLAVGNVVAIAQTNIKRMLAYSTISHVGFILMGILAGTHEGYAAALF 330
Query: 155 HLMTHAFFKALLFLSAGSIIINMKHNQDIRNMG---GLYKYMPITCITSLIGLLSLVGAP 211
+ + +A A F G II+ + + N+ GL + P L+ + S+ G P
Sbjct: 331 YTLVYAIVAAGGF---GMIILLSRRGFEAENLDDFRGLNERSPWFAFIMLLIMFSMAGVP 387
Query: 212 FFSGFYSK 219
GFY+K
Sbjct: 388 PTVGFYAK 395
>sp|B7J7T2|NUON_ACIF2 NADH-quinone oxidoreductase subunit N OS=Acidithiobacillus
ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)
GN=nuoN PE=3 SV=1
Length = 481
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 207/315 (65%), Gaps = 13/315 (4%)
Query: 591 GQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGI 650
G M+M+SG +LLS+YLGLEL++L+ L+A ++++ ++EA +KYF+LG L+SG +LYG+
Sbjct: 117 GIMVMVSGGSLLSVYLGLELLALSQYALVAFYRDSVMATEAGLKYFVLGALASGLLLYGM 176
Query: 651 SILYGITGTLELQSIFNVIKLNNINCS--VLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
S+LYG+TGTL+++ I L N+ VL +++ I G++FKLG +PFHMW+PDVYQ
Sbjct: 177 SLLYGLTGTLDVRDI--AADLVNMTAGNLVLVFAIVFIAAGIAFKLGAAPFHMWLPDVYQ 234
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA ++T L++ PK+ F +I RLL+ + +WQ+I + L + SL++GNV AI Q
Sbjct: 235 GAPTVVTAFLASAPKIGAFALIIRLLVDGGYGMQESWQQIFVALTVVSLVVGNVIAIAQQ 294
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM+AYS+I H+G ML I++ + S FY + Y L FG +IL
Sbjct: 295 NIKRMLAYSTIGHVGFMLLGIVAGTEA--------GLASAFFYTVVYTLMSLAGFG-MIL 345
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L + + + +D F GL QR PW A +MMI MFS+AG PPT+GFYAK +F+ +
Sbjct: 346 LVSRAGFEAERIDDFKGLAQRKPWYAFLMMIVMFSMAGVPPTVGFYAKLAVFQAVVAAGY 405
Query: 889 IWLLLLIIMCSLIGA 903
+WL ++ ++ ++IGA
Sbjct: 406 VWLAVVGVLLAVIGA 420
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 18/232 (7%)
Query: 366 LFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDA 425
+FI IAF K+ P H WLPD + APT + LA+ K+G + L+ + + D
Sbjct: 210 VFIAAGIAF--KLGAAPFHMWLPDVYQGAPTVVTAFLASAP-KIGAFALI---IRLLVDG 263
Query: 426 SY----YFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISI 481
Y + + + L+++S++ ++IA+ Q +IK+++AYS+I H+GF+ LGI T+ +
Sbjct: 264 GYGMQESWQQIFVALTVVSLVVGNVIAIAQQNIKRMLAYSTIGHVGFMLLGIVAGTEAGL 323
Query: 482 QGAIIQMISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFSVFFIIFSLANCS 540
A + + L+S A F I + + I +F G+ P ++ +I +
Sbjct: 324 ASAFFYTVVYTLMSLAGFGMILLVSRAGFEAERIDDFKGLAQRKPWYAFLMMIVMFSMAG 383
Query: 541 LPGTSGFIGEFMIILSAVKFNF----CIGVLTSTALIFSAAYSLCLSKNIIF 588
+P T GF + + + V + +GVL + + A Y L + K + F
Sbjct: 384 VPPTVGFYAKLAVFQAVVAAGYVWLAVVGVLLA---VIGAFYYLRVVKVMYF 432
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 64/276 (23%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAF--------------------- 40
+L ++LG E++ ++ Y L+ F+ D +A A LK F
Sbjct: 124 GGSLLSVYLGLELLALSQYALVAFYRDSVMATEAGLKYFVLGALASGLLLYGMSLLYGLT 183
Query: 41 -----------LINRI---------------GAMAKSAQFPLHTWLPDSMEG-PTPASAL 73
L+N G K P H WLPD +G PT +A
Sbjct: 184 GTLDVRDIAADLVNMTAGNLVLVFAIVFIAAGIAFKLGAAPFHMWLPDVYQGAPTVVTAF 243
Query: 74 IHAATMVTAGIFMITRM-SPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
+ +A + A +I + + + + I + + ++ ++ I Q +IKR++AYS
Sbjct: 244 LASAPKIGAFALIIRLLVDGGYGMQESWQQIFVALTVVSLVVGNVIAIAQQNIKRMLAYS 303
Query: 133 TLSQLGYMTVGL--GVSA-------YTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDI 183
T+ +G+M +G+ G A YTV ++ LM+ A F +L +S + I
Sbjct: 304 TIGHVGFMLLGIVAGTEAGLASAFFYTV-VYTLMSLAGFGMILLVSRAGF-----EAERI 357
Query: 184 RNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ GL + P +I + S+ G P GFY+K
Sbjct: 358 DDFKGLAQRKPWYAFLMMIVMFSMAGVPPTVGFYAK 393
>sp|Q83BR8|NUON_COXBU NADH-quinone oxidoreductase subunit N OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=nuoN PE=3 SV=1
Length = 482
Score = 259 bits (662), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 208/316 (65%), Gaps = 10/316 (3%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LG + ++S +NLL+++LGLEL+SL ++A +N S EA +KYF++G ++SG +LY
Sbjct: 119 MLGMVALVSSSNLLTVFLGLELLSLPTYAMVALYRNKTRSVEAGMKYFVIGAIASGMLLY 178
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCS-VLALSLLLIIVGLSFKLGISPFHMWVPDVY 707
G+S+++G T +L+L I + ++ + +L L+ I+ G++FKLG +PFHMWVPDVY
Sbjct: 179 GMSMIFGATQSLDLTEIAKAVSATPLHQNLILVFGLVFIVAGVAFKLGTAPFHMWVPDVY 238
Query: 708 QGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQ 767
+GA +TL +ST PK++ + +I RLLI + L + W ++L+++AI S+ IGN +AI Q
Sbjct: 239 EGAPSSVTLFISTAPKIAAYAMIIRLLILGMPALHVQWHQMLIVVAILSMGIGNFAAIVQ 298
Query: 768 YNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVII 827
N KRM+AYSSIAHMG ML ++ N + +FY ITY LGAFG+++
Sbjct: 299 SNIKRMLAYSSIAHMGYMLLGVLCGTR--------NGYAAAMFYTITYSLMSLGAFGMVV 350
Query: 828 LLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQ 887
L+ + + ++ F GL+ RNPW A +MM+ +FSLAG PP +GF AK + + + +
Sbjct: 351 LMSRGGF-EAENINDFAGLNSRNPWLAFMMMLILFSLAGVPPLVGFIAKVGVLDALIQVH 409
Query: 888 KIWLLLLIIMCSLIGA 903
+WL +L ++ +++GA
Sbjct: 410 LVWLAVLAVLFAIVGA 425
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 151/299 (50%), Gaps = 15/299 (5%)
Query: 301 IPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQ-LSI 358
+P + ++ + RS A +K+F+ + S ++L M + + + +S ++ + +S
Sbjct: 143 LPTYAMVALYRNKTRSVEAGMKYFVIGAIASGMLLYGM-SMIFGATQSLDLTEIAKAVSA 201
Query: 359 TKIEQ--IWLFITFFI--AFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGL 414
T + Q I +F FI A K+ P H W+PD + AP+ ++ ++ K+ Y +
Sbjct: 202 TPLHQNLILVFGLVFIVAGVAFKLGTAPFHMWVPDVYEGAPSSVTLFISTAP-KIAAYAM 260
Query: 415 L-RFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGI 473
+ R + P + ++I ++++S+ + A+VQ +IK+++AYSSIAHMG++ LG+
Sbjct: 261 IIRLLILGMPALHVQWHQMLIVVAILSMGIGNFAAIVQSNIKRMLAYSSIAHMGYMLLGV 320
Query: 474 FMLTKISIQGAIIQMISHALISSAMFISIGFL-YNQMKTRLISNFGGIINVIP--HFSVF 530
T+ A+ I+++L+S F + + + I++F G+ + P F +
Sbjct: 321 LCGTRNGYAAAMFYTITYSLMSLGAFGMVVLMSRGGFEAENINDFAGLNSRNPWLAFMMM 380
Query: 531 FIIFSLANCSLPGTSGFIGEFMIILSAVKFNFC-IGVLTSTALIFSAAYSLCLSKNIIF 588
I+FSLA P GFI + ++ + ++ + + VL I A Y + + K + F
Sbjct: 381 LILFSLAGV--PPLVGFIAKVGVLDALIQVHLVWLAVLAVLFAIVGAYYYIRVVKVMYF 437
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 69/279 (24%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRI---------------- 45
S+NL +FLG E++ + +Y ++ + +K ++ A +K F+I I
Sbjct: 128 SSNLLTVFLGLELLSLPTYAMVALYRNKTRSVEAGMKYFVIGAIASGMLLYGMSMIFGAT 187
Query: 46 --------------------------------GAMAKSAQFPLHTWLPDSMEG-PTPASA 72
G K P H W+PD EG P+ +
Sbjct: 188 QSLDLTEIAKAVSATPLHQNLILVFGLVFIVAGVAFKLGTAPFHMWVPDVYEGAPSSVTL 247
Query: 73 LIHAATMVTAGIFMITRMSPLFELSNTALSI----ILFIGAITAFFMG-LLGIIQNDIKR 127
I A + A MI R L L AL + +L + AI + +G I+Q++IKR
Sbjct: 248 FISTAPKI-AAYAMIIR---LLILGMPALHVQWHQMLIVVAILSMGIGNFAAIVQSNIKR 303
Query: 128 IIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHN---- 180
++AYS+++ +GYM +G+ + Y ++F+ +T+ +L+ L A +++ M
Sbjct: 304 MLAYSSIAHMGYMLLGVLCGTRNGYAAAMFYTITY----SLMSLGAFGMVVLMSRGGFEA 359
Query: 181 QDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
++I + GL P ++ L SL G P GF +K
Sbjct: 360 ENINDFAGLNSRNPWLAFMMMLILFSLAGVPPLVGFIAK 398
>sp|Q3SJP4|NUON_THIDA NADH-quinone oxidoreductase subunit N OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=nuoN PE=3 SV=1
Length = 483
Score = 256 bits (655), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 211/315 (66%), Gaps = 9/315 (2%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
+LG M+M+S ++ L++YLGLEL+SL+L ++A Q+++ ++EAA+KYF+LG L+SG +LY
Sbjct: 118 LLGMMVMVSASHFLTLYLGLELLSLSLYAMVALQRDSSVATEAAMKYFVLGALASGMLLY 177
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQ 708
G+S++YG+TG+L L I V++ L ++ ++ GL+FKLG PFHMWVPDVY
Sbjct: 178 GMSMVYGVTGSLALGDIAIVLQDGTDLRIPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYH 237
Query: 709 GASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQY 768
GA +TL + + PK++ F + R+L + L V W+ +L+ILA+ S+ IGN++AI Q
Sbjct: 238 GAPTAMTLFVGSAPKIAAFAFVVRVLGQGLESQVSEWRDMLVILAVLSMAIGNIAAIAQS 297
Query: 769 NFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIIL 828
N KRM AYS+I+HMG ML +++ N + +FY++ Y LG FG+I+L
Sbjct: 298 NLKRMFAYSTISHMGFMLLGVLAGSQ--------NGYGAAMFYVLVYTLMTLGGFGMILL 349
Query: 829 LKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQK 888
L + ++D LD F GL++R+PW A +M++ MFS+ G PPT+GFYAK + + + E
Sbjct: 350 L-SRAGFESDRLDDFKGLNRRSPWLAFVMLLLMFSMTGIPPTVGFYAKLAVLQAVVEIGY 408
Query: 889 IWLLLLIIMCSLIGA 903
+WL + ++ SL+GA
Sbjct: 409 VWLAVAAVLFSLVGA 423
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 50 KSAQFPLHTWLPDSMEG-PTPASALIHAATMVTAGIFMITRMSPLFELSNTALSIILFIG 108
K P H W+PD G PT + + +A + A F++ + E + +L I
Sbjct: 222 KLGAVPFHMWVPDVYHGAPTAMTLFVGSAPKIAAFAFVVRVLGQGLESQVSEWRDMLVIL 281
Query: 109 AITAFFMG-LLGIIQNDIKRIIAYSTLSQLGYMTVGL--------GVSAYTVSIFHLMTH 159
A+ + +G + I Q+++KR+ AYST+S +G+M +G+ G + + V ++ LMT
Sbjct: 282 AVLSMAIGNIAAIAQSNLKRMFAYSTISHMGFMLLGVLAGSQNGYGAAMFYVLVYTLMTL 341
Query: 160 AFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
F +L LS + + + GL + P L+ + S+ G P GFY+K
Sbjct: 342 GGFGMILLLSRAGF-----ESDRLDDFKGLNRRSPWLAFVMLLLMFSMTGIPPTVGFYAK 396
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 133/272 (48%), Gaps = 16/272 (5%)
Query: 313 SNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSI-----TKIEQIWLF 367
S + AA+K+F+ + S ++L M +Y ++ L+ ++I T + +F
Sbjct: 155 SVATEAAMKYFVLGALASGMLLYGMSMVYGVTGS----LALGDIAIVLQDGTDLRIPLVF 210
Query: 368 -ITFFIA-FAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYG-LLRFSLPIFPD 424
I F +A A K+ P H W+PD + APT ++ + + K+ + ++R
Sbjct: 211 GIVFVVAGLAFKLGAVPFHMWVPDVYHGAPTAMTLFVGSAP-KIAAFAFVVRVLGQGLES 269
Query: 425 ASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGA 484
+ ++++ L+++S+ ++ A+ Q ++K++ AYS+I+HMGF+ LG+ ++ A
Sbjct: 270 QVSEWRDMLVILAVLSMAIGNIAAIAQSNLKRMFAYSTISHMGFMLLGVLAGSQNGYGAA 329
Query: 485 IIQMISHALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPG 543
+ ++ + L++ F I L ++ + +F G+ P + ++ + +P
Sbjct: 330 MFYVLVYTLMTLGGFGMILLLSRAGFESDRLDDFKGLNRRSPWLAFVMLLLMFSMTGIPP 389
Query: 544 TSGFIGEFMIILSAVKFNFCIGVLTSTALIFS 575
T GF + ++ + V+ + L A++FS
Sbjct: 390 TVGFYAKLAVLQAVVEIGYVW--LAVAAVLFS 419
>sp|P03913|NU4M_ASPAM NADH-ubiquinone oxidoreductase chain 4 OS=Aspergillus amstelodami
GN=ND4 PE=3 SV=1
Length = 488
Score = 253 bits (645), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 158/372 (42%), Positives = 233/372 (62%), Gaps = 8/372 (2%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDI--KKKLAEYMSAFLILSG 278
++ I YF+IY LG+DGLS++FI LT I I IL + + K + ++ L+L
Sbjct: 65 EEHYQISYFDIY--LGVDGLSIYFILLTTIIMPIAILCNWNSIQSKNVLSFVVIMLLLET 122
Query: 279 LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMI 338
L++ F LD +LFYIFFE+ L P+F++IG +G SN+ A+ FLYTL+GSL ML+S++
Sbjct: 123 LLLAVFLVLDVLLFYIFFESILPPLFLLIGLFGSSNKVRASFYLFLYTLLGSLFMLLSIV 182
Query: 339 YLYYI-SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
+ I F+ LS + + Q++LF FIAFA+K P+ ++TWL AHVE+P
Sbjct: 183 AMSSIMGTTDFDALSKSNFN--YVTQLFLFYGIFIAFAVKTPVSFLNTWLLKAHVESPLS 240
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
GS+ILA I+LKL YG+ R LP+ P AS ++ +I + +I+IIY S + IDIK+L
Sbjct: 241 GSIILAGIVLKLSLYGIFRLILPLLPKASLNYTYIIYVIGVITIIYASFSTLRTIDIKEL 300
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISI-GFLYNQMKTRLISN 516
IAYSS++H ++G F T I+G+I ++H +SS +FI G LY++ TRLI+
Sbjct: 301 IAYSSVSHAAVYSIGAFSNTIQGIEGSIALGLAHGFVSSGLFICAGGILYDRSSTRLITY 360
Query: 517 FGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSA 576
+ G+ V+P FSV F I SL N P T FIGEFM + + +GVL ST+++FSA
Sbjct: 361 YRGMAQVMPIFSVLFFILSLGNSGTPLTLNFIGEFMSLYGVFERMPLLGVLASTSIVFSA 420
Query: 577 AYSLCLSKNIIF 588
AY++ + I+F
Sbjct: 421 AYTIFMYNRIVF 432
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 138/315 (43%), Gaps = 29/315 (9%)
Query: 630 EAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVG 689
A+ F+ +L S FML I + I GT + F+ + +N N I +
Sbjct: 161 RASFYLFLYTLLGSLFMLLSIVAMSSIMGTTD----FDALSKSNFNYVTQLFLFYGIFIA 216
Query: 690 LSFKLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQKI 748
+ K +S + W+ + + + +++L+ KLSL+ I +RL++ L +N+ I
Sbjct: 217 FAVKTPVSFLNTWLLKAHVESPLSGSIILAGIVLKLSLYGI-FRLILPLLPKASLNYTYI 275
Query: 749 LLILAIFSLIIGNVSAITQYNFKRMIAYSSIAH-----MGLMLFSIISIKTSHNNLIIFN 803
+ ++ + ++I + S + + K +IAYSS++H +G +I I+ S +
Sbjct: 276 IYVIGVITIIYASFSTLRTIDIKELIAYSSVSHAAVYSIGAFSNTIQGIEGSIALGLAHG 335
Query: 804 SCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFS 863
SGLF + A G++ + T + + G+ Q P +++ I
Sbjct: 336 FVSSGLF---------ICAGGIL-----YDRSSTRLITYYRGMAQVMPIFSVLFFILSLG 381
Query: 864 LAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGAKGGRIIKDCPGV--GSPGIY 921
+G P T+ F +F +FE ++ LL ++ S++ + I V GS IY
Sbjct: 382 NSGTPLTLNFIGEFMSLYGVFE--RMPLLGVLASTSIVFSAAYTIFMYNRIVFGGSYSIY 439
Query: 922 IVEAIKAARKSALII 936
VE I + I+
Sbjct: 440 FVENIGDVTRREFIM 454
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 56 LHTWLPDS-MEGPTPASALIHAATMVTA--GIF-MITRMSPLFELSNTALSIILFIGAIT 111
L+TWL + +E P S ++ + + GIF +I + P L+ T II IG IT
Sbjct: 226 LNTWLLKAHVESPLSGSIILAGIVLKLSLYGIFRLILPLLPKASLNYTY--IIYVIGVIT 283
Query: 112 AFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL---GVSAYTVSIFHLMTHAFFKALLFL 168
+ + DIK +IAYS++S ++G + SI + H F + LF+
Sbjct: 284 IIYASFSTLRTIDIKELIAYSSVSHAAVYSIGAFSNTIQGIEGSIALGLAHGFVSSGLFI 343
Query: 169 SAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAP 211
AG I+ + + I G+ + MPI + I L G P
Sbjct: 344 CAGGILYDRSSTRLITYYRGMAQVMPIFSVLFFILSLGNSGTP 386
>sp|Q3M9C7|NU4C3_ANAVT NAD(P)H-quinone oxidoreductase chain 4 3 OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ndhD3 PE=3 SV=1
Length = 537
Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 224/385 (58%), Gaps = 8/385 (2%)
Query: 212 FFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMS 271
F S Y +K W+ + + + +DGLS+ + LT I + I + + K +
Sbjct: 59 FQSSTYQFVEKYHWLPQIGLNWSVAVDGLSMPLLLLTGLINTLAIFAAWKVTNKPRLFYG 118
Query: 272 AFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSL 331
L++ +G F A D +LF++ +E L+P++++I WGG R YAA KF LYT S+
Sbjct: 119 LMLVMYSAQLGVFVAQDLLLFFLMWEIELVPVYLLISIWGGPKRRYAATKFILYTAAASI 178
Query: 332 LMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
+L++ L + + +F+I + K ++ + F IAF +K+PI+P+HTWLPDA
Sbjct: 179 FILVAGFALAFSGDTVTFDIAALGMKEYPKAIELLAYAGFLIAFGVKLPIFPLHTWLPDA 238
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
H EA GS+ILA ++LK+G Y L+RF++ + PDA YF+ ++ L +++I+Y + A
Sbjct: 239 HGEASAPGSMILAGVLLKMGGYALIRFNIEMLPDAHVYFAPVLAILGVVNIVYGACCAFA 298
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q ++K+ +AYSSIAHMGFV +G+ T+I + GA++QM+SH L+++++F G Y +
Sbjct: 299 QTNLKRRLAYSSIAHMGFVLIGLASYTEIGVSGAVLQMVSHGLVAASLFFLTGVTYERTH 358
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS-------AVKFNFC 563
T L+ GGI V+P + ++A+ +LPG SGF+GE M+ + + F
Sbjct: 359 TLLMDKMGGIGKVMPKTFALYTAGAMASLALPGMSGFVGELMVFIGIATSDVYSSSFKVV 418
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
+ +L++ +I + Y L L + + +
Sbjct: 419 VVLLSAVGVILTPIYLLSLLRQVFY 443
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 54 FPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTA----LSIILFIGA 109
FPLHTWLPD+ + ++I A ++ G + + R + E+ A ++ +G
Sbjct: 229 FPLHTWLPDAHGEASAPGSMILAGVLLKMGGYALIRFN--IEMLPDAHVYFAPVLAILGV 286
Query: 110 ITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFK 163
+ + Q ++KR +AYS+++ +G++ +GL GVS ++ +++H
Sbjct: 287 VNIVYGACCAFAQTNLKRRLAYSSIAHMGFVLIGLASYTEIGVSG---AVLQMVSHGLVA 343
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
A LF G + H + MGG+ K MP T G ++ + P SGF +
Sbjct: 344 ASLFFLTG-VTYERTHTLLMDKMGGIGKVMPKTFALYTAGAMASLALPGMSGFVGE 398
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 687 IVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINW 745
++ KL I P H W+PD + AS +++L+ K+ + +I R I+ L + +
Sbjct: 219 LIAFGVKLPIFPLHTWLPDAHGEASAPGSMILAGVLLKMGGYALI-RFNIEMLPDAHVYF 277
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
+L IL + +++ G A Q N KR +AYSSIAHMG +L + S
Sbjct: 278 APVLAILGVVNIVYGACCAFAQTNLKRRLAYSSIAHMGFVLIGLAS 323
>sp|Q8YZV7|NU4C1_NOSS1 NAD(P)H-quinone oxidoreductase chain 4 1 OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ndhD1 PE=3 SV=1
Length = 538
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/385 (33%), Positives = 224/385 (58%), Gaps = 8/385 (2%)
Query: 212 FFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMS 271
F S Y +K W+ + + + +DGLS+ + LT I + I + + K +
Sbjct: 60 FQSSSYQFVEKYAWVPQIGLNWSVAVDGLSMPLLLLTGLINTLAIFAAWKVTNKPRLFYG 119
Query: 272 AFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSL 331
L++ +G F A D +LF++ +E L+P++++I WGG R YAA KF LYT S+
Sbjct: 120 LMLVMYSAQLGVFVAQDLLLFFLMWEIELVPVYLLISIWGGPKRRYAATKFILYTAAASI 179
Query: 332 LMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDA 390
+L++ L + + +F+I + K ++ + F IAF +K+PI+P+HTWLPDA
Sbjct: 180 FILVAGFALAFSGDTVTFDIAALGMKEYPKAIELLAYAGFLIAFGVKLPIFPLHTWLPDA 239
Query: 391 HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMV 450
H EA GS+ILA ++LK+G Y L+RF++ + PDA YF+ ++ L +++I+Y + A
Sbjct: 240 HGEASAPGSMILAGVLLKMGGYALIRFNMEMLPDAHVYFAPVLAILGVVNIVYGACCAFA 299
Query: 451 QIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMK 510
Q ++K+ +AYSSIAHMGFV +G+ T+I + GA++QM+SH L+++++F G Y +
Sbjct: 300 QTNLKRRLAYSSIAHMGFVLIGLASYTEIGVSGAVLQMVSHGLVAASLFFLTGVTYERTH 359
Query: 511 TRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS-------AVKFNFC 563
T L+ GGI ++P + ++A+ +LPG SGF+GE M+ + + F
Sbjct: 360 TLLMDKMGGIGKIMPKTFALYTAGAMASLALPGMSGFVGELMVFIGIATSDVYSSSFKVV 419
Query: 564 IGVLTSTALIFSAAYSLCLSKNIIF 588
+ +L++ +I + Y L + + + +
Sbjct: 420 VVLLSAVGVILTPIYLLSMLRQVFY 444
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 54 FPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITR--MSPLFELSNTALSIILFIGAIT 111
FPLHTWLPD+ + ++I A ++ G + + R M L + ++ +G +
Sbjct: 230 FPLHTWLPDAHGEASAPGSMILAGVLLKMGGYALIRFNMEMLPDAHVYFAPVLAILGVVN 289
Query: 112 AFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKAL 165
+ Q ++KR +AYS+++ +G++ +GL GVS ++ +++H A
Sbjct: 290 IVYGACCAFAQTNLKRRLAYSSIAHMGFVLIGLASYTEIGVSG---AVLQMVSHGLVAAS 346
Query: 166 LFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LF G + H + MGG+ K MP T G ++ + P SGF +
Sbjct: 347 LFFLTG-VTYERTHTLLMDKMGGIGKIMPKTFALYTAGAMASLALPGMSGFVGE 399
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 687 IVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINW 745
++ KL I P H W+PD + AS +++L+ K+ + +I R ++ L + +
Sbjct: 220 LIAFGVKLPIFPLHTWLPDAHGEASAPGSMILAGVLLKMGGYALI-RFNMEMLPDAHVYF 278
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
+L IL + +++ G A Q N KR +AYSSIAHMG +L + S
Sbjct: 279 APVLAILGVVNIVYGACCAFAQTNLKRRLAYSSIAHMGFVLIGLAS 324
>sp|Q2JTD6|NU4C2_SYNJA NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=ndhD2 PE=3 SV=1
Length = 535
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 224/376 (59%), Gaps = 8/376 (2%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
++ W+ + + +G DGLS+ I LTAF+T + IL + + K + L + G
Sbjct: 83 ERYTWVPQVGLSWSVGADGLSMPLILLTAFVTTLAILAAWPVTLKPRLFYFLMLAMYGGQ 142
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F D +LF++ +E LIP+++++ WGG NR YAA KF LYT + SL +L++ + +
Sbjct: 143 IGVFAVQDMLLFFLMWELELIPVYLLLSIWGGYNRLYAATKFILYTALSSLFILVAGLAM 202
Query: 341 -YYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y SF++ + Q+ L+ F IA+ +K+P++P+HTWLPDAH EA
Sbjct: 203 AFYGDPISFDMTDLAHKAYPLSFQLLLYGAFLIAYGVKLPVFPLHTWLPDAHGEATAPVH 262
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
++LA I+LK+G Y L+R ++ + PDA YF+ ++I L +++II+ +L + Q ++K+ IA
Sbjct: 263 MLLAGILLKMGGYALMRMNVGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIA 322
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
YSSI+HMGFV +GI LT+I + GA++QMISH LI +++F +G Y++ T + GG
Sbjct: 323 YSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGG 382
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS-------AVKFNFCIGVLTSTAL 572
+ +P F SLA+ +LPG SGF+ E M+ + ++ F + L + +
Sbjct: 383 VGLKMPKIFSMFTACSLASLALPGMSGFVAELMVFIGMATTDAYSLPFRLVVVFLAAVGV 442
Query: 573 IFSAAYSLCLSKNIIF 588
I + Y L + + I F
Sbjct: 443 ILTPIYLLSMLRQIFF 458
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTAL---SIILF 106
K FPLHTWLPD+ T ++ A ++ G + + RM+ + L + L +++
Sbjct: 240 KLPVFPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALMRMN-VGMLPDAHLYFAPVLIV 298
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFK 163
+G + F L Q ++KR IAYS++S +G++ +G+G + ++ +++H
Sbjct: 299 LGVVNIIFAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIG 358
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMP-ITCITSLIGLLSLVGAPFFSGFYSK 219
A LF G+ + H ++ MGG+ MP I + + L SL P SGF ++
Sbjct: 359 ASLFFLVGA-TYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASL-ALPGMSGFVAE 413
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 19/234 (8%)
Query: 570 TALIFSAAYSLCLSKNIIFVL------GQMIMISGNNLLSIYL--GLELMSLTLCVLIAS 621
T L AA+ + L + + L GQ+ + + ++L +L LEL+ + L + I
Sbjct: 114 TTLAILAAWPVTLKPRLFYFLMLAMYGGQIGVFAVQDMLLFFLMWELELIPVYLLLSIWG 173
Query: 622 QKNNIFSSEAAIKYFILGILSSGFMLY-GISI-LYGITGTLELQSIFNVIKLNNINCSVL 679
N ++ AA K+ + LSS F+L G+++ YG + ++ + + K ++ +L
Sbjct: 174 GYNRLY---AATKFILYTALSSLFILVAGLAMAFYGDPISFDMTDLAH--KAYPLSFQLL 228
Query: 680 ALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCL 738
LI G+ KL + P H W+PD + A+ + +LL+ K+ + ++ R+ + L
Sbjct: 229 LYGAFLIAYGV--KLPVFPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALM-RMNVGML 285
Query: 739 LPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
+ + +L++L + ++I +++ Q N KR IAYSSI+HMG +L I S+
Sbjct: 286 PDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSL 339
>sp|Q8DHX4|NU4C2_THEEB NAD(P)H-quinone oxidoreductase chain 4 2 OS=Thermosynechococcus
elongatus (strain BP-1) GN=ndhD2 PE=3 SV=1
Length = 533
Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 219/370 (59%), Gaps = 8/370 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
W+ + + L +DGL++ I LT + + I + +K+K + L L IG F
Sbjct: 71 WLPQIGLNWSLAVDGLAVPLILLTGLVNTLAIFAAWQVKQKPRLFYFLMLALYSAQIGVF 130
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-YYI 343
A D +LF++ +E L+P++++I WGG+ R YAA KF LYT +GSL +LI+ + + +Y
Sbjct: 131 AAQDLILFFLIWELELVPVYLLISIWGGAQRQYAATKFILYTAVGSLFILIAGLGMAFYG 190
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+ S N+ + + ++ + F IAF +K+PI+P+HTWLPDAH EA S++LA
Sbjct: 191 GDFSLNMAALGLKNYPLALELLAYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMVLA 250
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
++LK+G YGL+RF+L + PDA YF+ ++I L +++IIY +L A Q ++K+ +AYSSI
Sbjct: 251 GVLLKMGGYGLIRFNLQMLPDAHIYFAPVLIALGVVNIIYGALTAFGQENLKRRLAYSSI 310
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFV LGI L I + GA++QM+SH LI++ +F G Y++ T + GI
Sbjct: 311 SHMGFVLLGIGALNGIGLNGAMLQMLSHGLIAAVLFFLAGVTYDRTHTLAMEKMSGIAQS 370
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIIL-----SAVKFNFCIGV--LTSTALIFSA 576
+P F S+A+ +LPG SGF+ E + L A F +GV L + +I +
Sbjct: 371 MPKTFALFTASSMASLALPGMSGFVSELTVFLGLTNSDAYSTTFKVGVIFLAAVGVIITP 430
Query: 577 AYSLCLSKNI 586
Y L + + +
Sbjct: 431 VYLLSMVRRV 440
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 54 FPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTAL---SIILFIGAI 110
FPLHTWLPD+ + +++ A ++ G + + R + L L + + +++ +G +
Sbjct: 228 FPLHTWLPDAHGEASAPVSMVLAGVLLKMGGYGLIRFN-LQMLPDAHIYFAPVLIALGVV 286
Query: 111 TAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFKALLF 167
+ L Q ++KR +AYS++S +G++ +G+G ++ +++H A+LF
Sbjct: 287 NIIYGALTAFGQENLKRRLAYSSISHMGFVLLGIGALNGIGLNGAMLQMLSHGLIAAVLF 346
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
AG + + H + M G+ + MP T ++ + P SGF S+
Sbjct: 347 FLAG-VTYDRTHTLAMEKMSGIAQSMPKTFALFTASSMASLALPGMSGFVSE 397
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 21/209 (10%)
Query: 679 LALSLLL---IIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLL 734
LAL LL ++ KL I P H W+PD + AS ++++L+ K+ + +I R
Sbjct: 207 LALELLAYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMVLAGVLLKMGGYGLI-RFN 265
Query: 735 IKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKT 794
++ L I + +L+ L + ++I G ++A Q N KR +AYSSI+HMG +L I ++
Sbjct: 266 LQMLPDAHIYFAPVLIALGVVNIIYGALTAFGQENLKRRLAYSSISHMGFVLLGIGALNG 325
Query: 795 SHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDEL--DIFIGLHQRNPW 852
N + GL V+ L T ++T L + G+ Q P
Sbjct: 326 IGLNGAMLQMLSHGLIA------------AVLFFLAGVTYDRTHTLAMEKMSGIAQSMPK 373
Query: 853 C-ALIMMIFMFSLAGFPPTIGFYAKFFIF 880
AL M SLA P GF ++ +F
Sbjct: 374 TFALFTASSMASLA-LPGMSGFVSELTVF 401
>sp|Q2JK43|NU4C2_SYNJB NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=ndhD2 PE=3 SV=1
Length = 534
Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 223/376 (59%), Gaps = 8/376 (2%)
Query: 221 KKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLI 280
++ W+ + + +G DGLS+ I LTAFIT + IL + + K + L + G
Sbjct: 83 ERYTWVPQVGLSWSVGADGLSMPLILLTAFITTLAILAAWPVTLKPRLFYFLMLAMYGGQ 142
Query: 281 IGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL 340
IG F D +LF++ +E LIP+++++ WGG+NR YAA KF LYT + SL +L++ + +
Sbjct: 143 IGVFAVQDMLLFFLMWELELIPVYLLLSIWGGANRLYAATKFILYTALSSLFILVAGLAM 202
Query: 341 -YYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGS 399
+Y SF++ + Q+ ++ F IA+ +K+PI+P+HTWLPDAH EA
Sbjct: 203 AFYGDPISFDMTDLAHKTYPLTFQLLMYGAFLIAYGVKLPIFPLHTWLPDAHGEATAPVH 262
Query: 400 VILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIA 459
++LA I+LK+G Y L+R + + PDA YF+ ++I L +++II+ +L + Q ++K+ IA
Sbjct: 263 MLLAGILLKMGGYALMRMNAGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIA 322
Query: 460 YSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG 519
SSI+HMGFV +GI LT+I + GA++QMISH LI +++F +G Y++ T + GG
Sbjct: 323 CSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGG 382
Query: 520 IINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS-------AVKFNFCIGVLTSTAL 572
+ +P F SLA+ +LPG SGF+ E M+ + ++ F + L + +
Sbjct: 383 VGLKMPKIFSMFTACSLASLALPGMSGFVAEIMVFIGMATTDAYSLPFRLVVVFLAAVGV 442
Query: 573 IFSAAYSLCLSKNIIF 588
I + Y L + + I F
Sbjct: 443 ILTPIYLLSMLRQIFF 458
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 54 FPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTAL---SIILFIGAI 110
FPLHTWLPD+ T ++ A ++ G + + RM+ L + L +++ +G +
Sbjct: 244 FPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALMRMNAGM-LPDAHLYFAPVLIVLGVV 302
Query: 111 TAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFKALLF 167
F L Q ++KR IA S++S +G++ +G+G + ++ +++H A LF
Sbjct: 303 NIIFAALTSFAQRNLKRKIACSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLF 362
Query: 168 LSAGSIIINMKHNQDIRNMGGLYKYMP-ITCITSLIGLLSLVGAPFFSGFYSK 219
G+ + H ++ MGG+ MP I + + L SL P SGF ++
Sbjct: 363 FLVGA-TYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASL-ALPGMSGFVAE 413
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 570 TALIFSAAYSLCLSKNIIFVL------GQMIMISGNNLLSIYL--GLELMSLTLCVLIAS 621
T L AA+ + L + + L GQ+ + + ++L +L LEL+ + L + I
Sbjct: 114 TTLAILAAWPVTLKPRLFYFLMLAMYGGQIGVFAVQDMLLFFLMWELELIPVYLLLSIWG 173
Query: 622 QKNNIFSSEAAIKYFILGILSSGFMLY-GISI-LYGITGTLELQSIFNVIKLNNINCSVL 679
N ++ AA K+ + LSS F+L G+++ YG + ++ + + K + +L
Sbjct: 174 GANRLY---AATKFILYTALSSLFILVAGLAMAFYGDPISFDMTDLAH--KTYPLTFQLL 228
Query: 680 ALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCL 738
LI G+ KL I P H W+PD + A+ + +LL+ K+ + ++ R+ L
Sbjct: 229 MYGAFLIAYGV--KLPIFPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALM-RMNAGML 285
Query: 739 LPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISI 792
+ + +L++L + ++I +++ Q N KR IA SSI+HMG +L I S+
Sbjct: 286 PDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIACSSISHMGFVLIGIGSL 339
>sp|Q3MCB9|NU4C1_ANAVT NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ndhD1 PE=3 SV=1
Length = 525
Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 221/387 (57%), Gaps = 8/387 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
W+ ++ + +G DGLS+ I LT FIT + L + + K + L + G I F
Sbjct: 72 WVPQLDLNWSVGADGLSMPLIILTGFITTLATLAAWPVTLKPRLFYFLLLAMYGGQIAVF 131
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-YYI 343
D +LF++ +E LIP+++++ WGG R YAA KF LYT GSL +L++ + + +Y
Sbjct: 132 AVQDLLLFFLVWELELIPVYLLLAIWGGKKRQYAATKFILYTAGGSLFILLAALTMAFYG 191
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
N +F++ S Q+ L+ F IA+AIK+PI P+HTWLPDAH EA ++LA
Sbjct: 192 DNVTFDMRSLALKDYALNFQLLLYAGFLIAYAIKLPIIPLHTWLPDAHGEATAPAHMLLA 251
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
I+LK+G Y L+R + I PDA YF+ +++ L +++IIY +L + Q ++K+ IAYSSI
Sbjct: 252 GILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSI 311
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFV +G T + + GA++QM+SH LI +++F +G Y++ T ++ GG+
Sbjct: 312 SHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKR 371
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS-------AVKFNFCIGVLTSTALIFSA 576
+P F S+A+ +LPG SGF+ E M+ + + F + L + +I +
Sbjct: 372 MPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTP 431
Query: 577 AYSLCLSKNIIFVLGQMIMISGNNLLS 603
Y L + + I + ++S L+
Sbjct: 432 IYLLSMLREIFYGKENEELVSHQQLID 458
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 55 PLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSP--LFELSNTALSIILFIGAITA 112
PLHTWLPD+ T + ++ A ++ G + + RM+ L + +++ +G +
Sbjct: 230 PLHTWLPDAHGEATAPAHMLLAGILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNI 289
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHAFFKALL 166
+ L Q ++KR IAYS++S +G++ +G LG+S ++ +++H A L
Sbjct: 290 IYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSG---AVLQMVSHGLIGASL 346
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMP-ITCITSLIGLLSLVGAPFFSGFYSK 219
F G+ + H + MGG+ K MP I + + + SL P SGF ++
Sbjct: 347 FFLVGA-TYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASL-ALPGMSGFVAE 398
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 147/325 (45%), Gaps = 35/325 (10%)
Query: 570 TALIFSAAYSLCLSKNIIFVL------GQMIMISGNNLLSIYL--GLELMSLTLCVLIAS 621
T L AA+ + L + + L GQ+ + + +LL +L LEL+ + L + I
Sbjct: 99 TTLATLAAWPVTLKPRLFYFLLLAMYGGQIAVFAVQDLLLFFLVWELELIPVYLLLAIWG 158
Query: 622 QKNNIFSSEAAIKYFILGILSSGFMLYGISIL--YGITGTLELQSIFNVIKLNNINCSVL 679
K + AA K+ + S F+L + YG T +++S+ +K +N +L
Sbjct: 159 GKKRQY---AATKFILYTAGGSLFILLAALTMAFYGDNVTFDMRSL--ALKDYALNFQLL 213
Query: 680 ALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCL 738
+ LI + KL I P H W+PD + A+ +LL+ K+ + +I R+ L
Sbjct: 214 LYAGFLI--AYAIKLPIIPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALI-RMNAGIL 270
Query: 739 LPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNN 798
+ +L++L + ++I +++ Q N KR IAYSSI+HMG ++ S +
Sbjct: 271 PDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLS 330
Query: 799 LIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE--LDIFIGLHQRNPWC-AL 855
+ GL I +F ++GA T ++T LD G+ +R P A+
Sbjct: 331 GAVLQMVSHGL--IGASLFFLVGA----------TYDRTHTLMLDEMGGVGKRMPKIFAM 378
Query: 856 IMMIFMFSLAGFPPTIGFYAKFFIF 880
M SLA P GF A+ +F
Sbjct: 379 FTACSMASLA-LPGMSGFVAELMVF 402
>sp|A2T383|NU4C_ANGEV NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
OS=Angiopteris evecta GN=ndhD PE=3 SV=1
Length = 497
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 204/341 (59%), Gaps = 2/341 (0%)
Query: 220 DKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGL 279
++ WID N ++ LGIDGLS+ I LT F+T + L + + + + L +
Sbjct: 65 EEDYNWIDLINFHWRLGIDGLSMGLILLTGFVTTLATLAAWPVTRNTRLFHFLMLAMYSG 124
Query: 280 IIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLIS--M 337
IG F + D +LF+ +E LIPI++++ WGG R Y+A KF LYT GS+ +LI
Sbjct: 125 QIGLFASQDILLFFFMWELELIPIYLLLSIWGGKRRLYSATKFILYTAGGSIFLLIGALT 184
Query: 338 IYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTE 397
I LY + F+I S S +I ++ F IA+A+K+PI+P HTWLPD H EA
Sbjct: 185 IGLYGNNGPLFDIQSLATRSYPIALEIIIYSGFLIAYAVKLPIFPFHTWLPDTHGEAHYS 244
Query: 398 GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKL 457
++LA I+LK+G YGL+R ++ + P A F+ ++ + I+Y SLI++ Q ++K+
Sbjct: 245 TCMLLAGILLKMGGYGLIRINMELLPHAHAIFAPWMVMFGAVQIVYASLISLNQRNLKRR 304
Query: 458 IAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNF 517
IAYSS++HMGFV +GI LT I + GAI+QMISH L +A+F G Y++ +T +
Sbjct: 305 IAYSSVSHMGFVMIGIGSLTNIGLNGAILQMISHGLTGAALFFLAGTSYDRTRTLFLDQL 364
Query: 518 GGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAV 558
GGI +P F IFSLA+ +LPG SGF+ E M+ L V
Sbjct: 365 GGIAISMPKLFTMFSIFSLASLALPGMSGFVAELMVFLGIV 405
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 54 FPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI----ILFIGA 109
FP HTWLPD+ ++ ++ A ++ G + + R++ EL A +I ++ GA
Sbjct: 228 FPFHTWLPDTHGEAHYSTCMLLAGILLKMGGYGLIRIN--MELLPHAHAIFAPWMVMFGA 285
Query: 110 ITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVS---AYTVSIFHLMTHAFFKALL 166
+ + L+ + Q ++KR IAYS++S +G++ +G+G +I +++H A L
Sbjct: 286 VQIVYASLISLNQRNLKRRIAYSSVSHMGFVMIGIGSLTNIGLNGAILQMISHGLTGAAL 345
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMP-ITCITSLIGLLSLVGAPFFSGFYSK 219
F AG+ + + +GG+ MP + + S+ L SL P SGF ++
Sbjct: 346 FFLAGT-SYDRTRTLFLDQLGGIAISMPKLFTMFSIFSLASL-ALPGMSGFVAE 397
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 131/289 (45%), Gaps = 30/289 (10%)
Query: 608 LELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYG-ISI-LYGITGTL-ELQS 664
LEL+ + L + I K ++S+ I Y G S F+L G ++I LYG G L ++QS
Sbjct: 143 LELIPIYLLLSIWGGKRRLYSATKFILYTAGG---SIFLLIGALTIGLYGNNGPLFDIQS 199
Query: 665 IFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-K 723
+ + I ++ S LI + KL I PFH W+PD + A +LL+ K
Sbjct: 200 L--ATRSYPIALEIIIYSGFLI--AYAVKLPIFPFHTWLPDTHGEAHYSTCMLLAGILLK 255
Query: 724 LSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMG 783
+ + +I R+ ++ L + +++ ++ ++ ++ Q N KR IAYSS++HMG
Sbjct: 256 MGGYGLI-RINMELLPHAHAIFAPWMVMFGAVQIVYASLISLNQRNLKRRIAYSSVSHMG 314
Query: 784 LMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE--LD 841
++ I S+ N I GL GA + L + ++T LD
Sbjct: 315 FVMIGIGSLTNIGLNGAILQMISHGL----------TGA--ALFFLAGTSYDRTRTLFLD 362
Query: 842 IFIGLHQRNPWCALIMMIFMFSLA--GFPPTIGFYAKFFIFEKIFETQK 888
G+ P L M +FSLA P GF A+ +F I +Q
Sbjct: 363 QLGGIAISMP--KLFTMFSIFSLASLALPGMSGFVAELMVFLGIVISQN 409
>sp|A1AVS5|NUON_RUTMC NADH-quinone oxidoreductase subunit N OS=Ruthia magnifica subsp.
Calyptogena magnifica GN=nuoN PE=3 SV=1
Length = 484
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 209/318 (65%), Gaps = 12/318 (3%)
Query: 589 VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLY 648
VLG M+M+SG +LL++YLGLE++SL+L LIA + + EAA+KYF+LG ++SG +LY
Sbjct: 120 VLGMMVMVSGYSLLTLYLGLEILSLSLYALIAIARERADAIEAALKYFVLGAIASGLLLY 179
Query: 649 GISILYGITGTLELQSIFNVIKLNNINCS---VLALSLLLIIVGLSFKLGISPFHMWVPD 705
G+S++YGI+G+L + I + N++ ++ L+ +++G++FKLG PFHMWVPD
Sbjct: 180 GMSMIYGISGSLNINDIASFASNTNLDSRETLIINFGLVFLVIGIAFKLGAVPFHMWVPD 239
Query: 706 VYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAI 765
VYQGA +TL +ST PK++ F ++ R+L+ L + W + ++L+I S+ +G+V A+
Sbjct: 240 VYQGAPTSVTLFISTVPKIAAFAMLVRILVDGLDSMHAYWSDLFMVLSILSIALGSVVAL 299
Query: 766 TQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFAILGAFGV 825
Q N KRM+AYS+I+H+G ++ ++ + FY++ Y+ L AFG+
Sbjct: 300 MQSNIKRMLAYSTISHVGFIMLGFVAGTPI--------GYGAAAFYMLVYVLMSLAAFGM 351
Query: 826 IILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFE 885
IILL N + D++ F GL++ PW AL+M+I + S+AG PP +GFY+KFFI +++
Sbjct: 352 IILL-NKQGFEIDQISDFKGLNKHAPWFALMMLIIILSMAGVPPLVGFYSKFFILQQVVS 410
Query: 886 TQKIWLLLLIIMCSLIGA 903
I + +++++ ++I A
Sbjct: 411 AGFITIAVIVVIFAVISA 428
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 10/280 (3%)
Query: 318 AAIKFFLYTLMGSLLMLISMIYLYYISNK-SFNILSWHQLSITKIEQIWLFITFFIAF-- 374
AA+K+F+ + S L+L M +Y IS + N ++ + + L I F + F
Sbjct: 162 AALKYFVLGAIASGLLLYGMSMIYGISGSLNINDIASFASNTNLDSRETLIINFGLVFLV 221
Query: 375 ---AIKIPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLL-RFSLPIFPDASYYFS 430
A K+ P H W+PD + APT ++ ++ + K+ + +L R + Y+S
Sbjct: 222 IGIAFKLGAVPFHMWVPDVYQGAPTSVTLFISTVP-KIAAFAMLVRILVDGLDSMHAYWS 280
Query: 431 NLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMIS 490
+L + LS++SI S++A++Q +IK+++AYS+I+H+GF+ LG T I A M+
Sbjct: 281 DLFMVLSILSIALGSVVALMQSNIKRMLAYSTISHVGFIMLGFVAGTPIGYGAAAFYMLV 340
Query: 491 HALISSAMFISIGFLYNQ-MKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIG 549
+ L+S A F I L Q + IS+F G+ P F++ +I L+ +P GF
Sbjct: 341 YVLMSLAAFGMIILLNKQGFEIDQISDFKGLNKHAPWFALMMLIIILSMAGVPPLVGFYS 400
Query: 550 EFMIILSAVKFNF-CIGVLTSTALIFSAAYSLCLSKNIIF 588
+F I+ V F I V+ + SA Y L + K++ F
Sbjct: 401 KFFILQQVVSAGFITIAVIVVIFAVISAYYYLQIIKSMYF 440
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 65/276 (23%)
Query: 4 NLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFL---------------------- 41
+L L+LG EI+ ++ Y LI ++ AI A LK F+
Sbjct: 131 SLLTLYLGLEILSLSLYALIAIARERADAIEAALKYFVLGAIASGLLLYGMSMIYGISGS 190
Query: 42 --INRIGAMA--------------------------KSAQFPLHTWLPDSMEG-PTPASA 72
IN I + A K P H W+PD +G PT +
Sbjct: 191 LNINDIASFASNTNLDSRETLIINFGLVFLVIGIAFKLGAVPFHMWVPDVYQGAPTSVTL 250
Query: 73 LIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMG-LLGIIQNDIKRIIAY 131
I + A ++ + + + S + + +I + +G ++ ++Q++IKR++AY
Sbjct: 251 FISTVPKIAAFAMLVRILVDGLDSMHAYWSDLFMVLSILSIALGSVVALMQSNIKRMLAY 310
Query: 132 STLSQLGYMT--------VGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDI 183
ST+S +G++ +G G +A+ + ++ LM+ A F ++ L+ I+ I
Sbjct: 311 STISHVGFIMLGFVAGTPIGYGAAAFYMLVYVLMSLAAFGMIILLNKQGFEID-----QI 365
Query: 184 RNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
+ GL K+ P + LI +LS+ G P GFYSK
Sbjct: 366 SDFKGLNKHAPWFALMMLIIILSMAGVPPLVGFYSK 401
>sp|Q6YXQ3|NU4C_PHYPA NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
OS=Physcomitrella patens subsp. patens GN=ndhD PE=3 SV=1
Length = 501
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 9/373 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
WID+ + ++ LGIDGLS+ I LT FIT + L + + + + L + +G F
Sbjct: 70 WIDFLDFHWRLGIDGLSIGLILLTGFITTLATLAAWPVTRNPRLFYFLMLAMYSGQVGLF 129
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-YYI 343
+ D +LF+ +E LIP+++++ WGG R YA KF LYT GS+ +L+ + + +Y
Sbjct: 130 ASQDILLFFFMWELELIPVYLLLCIWGGKRRLYATTKFILYTAGGSIFILMGALTMGFYG 189
Query: 344 SNK-SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
SN+ + + + S +I L++ FFIA+A+K+PI+P+HTWLPD H EA ++L
Sbjct: 190 SNQLTLDFQNLSNKSYPLELEIILYLGFFIAYAVKLPIFPLHTWLPDTHGEAHYSTCMLL 249
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A I+LK+G YGL+R ++ + P A F+ I+ + I I+Y +LI+ Q ++K+ IAYSS
Sbjct: 250 AGILLKMGGYGLIRINMELLPHAHSIFAPWIVAVGAIQIVYAALISFSQRNLKRRIAYSS 309
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
I+HMGFV +GI +T + + GAI+QM+SH LI +A+F G Y++ +T + GG
Sbjct: 310 ISHMGFVLIGIGSMTDVGLNGAILQMVSHGLIGAALFFLAGITYDRTRTLFLDQMGGTAI 369
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAV-----KFNF--CIGVLTSTALIFS 575
+P F FS+A+ +LPG SGF+ EF++ L V FNF + ++ + +I +
Sbjct: 370 YMPKIFTMFSSFSMASLALPGMSGFVAEFLVFLGIVVSNKYSFNFKILVTIIEAIGIILT 429
Query: 576 AAYSLCLSKNIIF 588
Y L + + + +
Sbjct: 430 PIYLLSMLRQMFY 442
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 45 IGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTALSI- 103
I K FPLHTWLPD+ ++ ++ A ++ G + + R++ EL A SI
Sbjct: 219 IAYAVKLPIFPLHTWLPDTHGEAHYSTCMLLAGILLKMGGYGLIRIN--MELLPHAHSIF 276
Query: 104 ---ILFIGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGV---SAYTVSIFHLM 157
I+ +GAI + L+ Q ++KR IAYS++S +G++ +G+G +I ++
Sbjct: 277 APWIVAVGAIQIVYAALISFSQRNLKRRIAYSSISHMGFVLIGIGSMTDVGLNGAILQMV 336
Query: 158 THAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKYMP 194
+H A LF AG I + + MGG YMP
Sbjct: 337 SHGLIGAALFFLAG-ITYDRTRTLFLDQMGGTAIYMP 372
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 139/322 (43%), Gaps = 60/322 (18%)
Query: 591 GQMIMISGNNLLSIYL--GLELMSLTLCVLIASQKNNIFSSEAAIKY------FIL-GIL 641
GQ+ + + ++L + LEL+ + L + I K ++++ I Y FIL G L
Sbjct: 124 GQVGLFASQDILLFFFMWELELIPVYLLLCIWGGKRRLYATTKFILYTAGGSIFILMGAL 183
Query: 642 SSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLII---VGLSFKLGISP 698
+ GF YG + L TL+ Q++ N L L ++L + + + KL I P
Sbjct: 184 TMGF--YGSNQL-----TLDFQNLSN-------KSYPLELEIILYLGFFIAYAVKLPIFP 229
Query: 699 FHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRL----LIKCLLPLVINWQKI----LL 750
H W+PD + A +LL+ I+ ++ LI+ + L+ + I ++
Sbjct: 230 LHTWLPDTHGEAHYSTCMLLAG--------ILLKMGGYGLIRINMELLPHAHSIFAPWIV 281
Query: 751 ILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLF 810
+ ++ + + +Q N KR IAYSSI+HMG +L I S+ N I GL
Sbjct: 282 AVGAIQIVYAALISFSQRNLKRRIAYSSISHMGFVLIGIGSMTDVGLNGAILQMVSHGL- 340
Query: 811 YIITYIFAILGAFGVIILLKNNTCNKTDE--LDIFIGLHQRNPWCALIMMIFMFSLA--G 866
+GA + L T ++T LD G P + M FS+A
Sbjct: 341 ---------IGA--ALFFLAGITYDRTRTLFLDQMGGTAIYMP--KIFTMFSSFSMASLA 387
Query: 867 FPPTIGFYAKFFIFEKIFETQK 888
P GF A+F +F I + K
Sbjct: 388 LPGMSGFVAEFLVFLGIVVSNK 409
>sp|Q8YQ78|NU4C2_NOSS1 NAD(P)H-quinone oxidoreductase chain 4-2 OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ndhD2 PE=3 SV=1
Length = 525
Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 214/372 (57%), Gaps = 8/372 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
W+ ++ + +G DGLS+ I LT FIT + L + + K + L + G I F
Sbjct: 72 WVPQLDLNWSVGADGLSMPLIILTGFITTLATLAAWPVTLKPRLFYFLLLAMYGGQIAVF 131
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLI-SMIYLYYI 343
D +LF++ +E LIP+++++ WGG R YAA KF LYT GSL +L+ S+ +Y
Sbjct: 132 AVQDMLLFFLVWELELIPVYLLLAIWGGKKRQYAATKFILYTAGGSLFILLASLTMAFYG 191
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
+F++ S Q+ L+ F IA+AIK+PI P+HTWLPDAH EA ++LA
Sbjct: 192 DTVTFDMRSLALKDYALNFQLLLYAGFLIAYAIKLPIIPLHTWLPDAHGEATAPAHMLLA 251
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
I+LK+G Y L+R + I PDA YF+ +++ L +++IIY +L + Q ++K+ IAYSSI
Sbjct: 252 GILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSI 311
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFV +G T + + GA++QM+SH LI +++F +G Y++ T ++ GG+
Sbjct: 312 SHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKR 371
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS-------AVKFNFCIGVLTSTALIFSA 576
+P F S+A+ +LPG SGF+ E M+ + + F + L + +I +
Sbjct: 372 MPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTP 431
Query: 577 AYSLCLSKNIIF 588
Y L + + I +
Sbjct: 432 IYLLSMLREIFY 443
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 55 PLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSP--LFELSNTALSIILFIGAITA 112
PLHTWLPD+ T + ++ A ++ G + + RM+ L + +++ +G +
Sbjct: 230 PLHTWLPDAHGEATAPAHMLLAGILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNI 289
Query: 113 FFMGLLGIIQNDIKRIIAYSTLSQLGYMTVG------LGVSAYTVSIFHLMTHAFFKALL 166
+ L Q ++KR IAYS++S +G++ +G LG+S ++ +++H A L
Sbjct: 290 IYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSG---AVLQMVSHGLIGASL 346
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMP-ITCITSLIGLLSLVGAPFFSGFYSK 219
F G+ + H + MGG+ K MP I + + + SL P SGF ++
Sbjct: 347 FFLVGA-TYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASL-ALPGMSGFVAE 398
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 39/327 (11%)
Query: 570 TALIFSAAYSLCLSKNIIFVL------GQMIMISGNNLLSIYL--GLELMSLTLCVLIAS 621
T L AA+ + L + + L GQ+ + + ++L +L LEL+ + L + I
Sbjct: 99 TTLATLAAWPVTLKPRLFYFLLLAMYGGQIAVFAVQDMLLFFLVWELELIPVYLLLAIWG 158
Query: 622 QKNNIFSSEAAIKYFILG----ILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCS 677
K +++ I Y G +L+S M + YG T T +++S+ +K +N
Sbjct: 159 GKKRQYAATKFILYTAGGSLFILLASLTMAF-----YGDTVTFDMRSL--ALKDYALNFQ 211
Query: 678 VLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIK 736
+L + LI + KL I P H W+PD + A+ +LL+ K+ + +I R+
Sbjct: 212 LLLYAGFLI--AYAIKLPIIPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALI-RMNAG 268
Query: 737 CLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSH 796
L + +L++L + ++I +++ Q N KR IAYSSI+HMG ++ S
Sbjct: 269 ILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLG 328
Query: 797 NNLIIFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDE--LDIFIGLHQRNPWC- 853
+ + GL I +F ++GA T ++T LD G+ +R P
Sbjct: 329 LSGAVLQMVSHGL--IGASLFFLVGA----------TYDRTHTLMLDEMGGVGKRMPKIF 376
Query: 854 ALIMMIFMFSLAGFPPTIGFYAKFFIF 880
A+ M SLA P GF A+ +F
Sbjct: 377 AMFTACSMASLA-LPGMSGFVAELMVF 402
>sp|O21047|NU4M_DICDI NADH-ubiquinone oxidoreductase chain 4 OS=Dictyostelium discoideum
GN=nad4 PE=3 SV=1
Length = 540
Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 214/346 (61%), Gaps = 6/346 (1%)
Query: 262 IKKKLAEYMSAFLILSG-LIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGG-SNRSYAA 319
IK+K + L+L+ LII F A D + YI +EATLIP+ I+IG WG + + AA
Sbjct: 112 IKEKTEQKFQIMLLLTEILIINFFAATDLVQLYIVYEATLIPMVIMIGVWGSRTEKKIAA 171
Query: 320 IKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSITKIEQI--WLFITFFIAFAIK 377
+ +YTL+GS+ ML+S+ LY + I+ + + E + +FI FFI FA+K
Sbjct: 172 FQILIYTLIGSIFMLMSIGILYSTLGTTDYIMIREYIDVLP-ENVRKLIFIGFFIGFAVK 230
Query: 378 IPIWPMHTWLPDAHVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLS 437
IPI P+H WL AHVEAPT GSV+LA I+LKLG YG +R+++ +FPD Y+ +I +
Sbjct: 231 IPIAPLHLWLLRAHVEAPTAGSVLLAGILLKLGGYGYIRYNIGLFPDLCEYYFPIIGGIC 290
Query: 438 LISIIYISLIAMVQIDIKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSA 497
LISI+Y + + Q+D+K+++AYSSI+HM + LG+F I+G II MI H ++S
Sbjct: 291 LISILYTGIATLTQLDVKRIVAYSSISHMNVIVLGLFSGVLQGIEGGIILMIGHGVVSGG 350
Query: 498 MFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSA 557
+F+ IG +Y++ KTR++ + +++V+P ++ F + L N + P TS F+GE +I +
Sbjct: 351 LFLCIGVIYDRCKTRIVYAYNNLVHVMPIMAILFFLLVLGNIAFPITSNFVGELLIFIGL 410
Query: 558 VKFNFCIGVLTSTALIFSAAYSLCLSKNIIFVLGQMIMISGNNLLS 603
+K N I ++ ++I +A YS L I FV ++I N ++S
Sbjct: 411 IKKNIIIAFFSALSMIVTAIYSFWLYNRIFFV-NEIIKREANEVIS 455
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 128/282 (45%), Gaps = 31/282 (10%)
Query: 597 SGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISILYGI 656
+ +L+ +Y+ E + + ++I + AA + I ++ S FML I ILY
Sbjct: 136 AATDLVQLYIVYEATLIPMVIMIGVWGSRTEKKIAAFQILIYTLIGSIFMLMSIGILYST 195
Query: 657 TGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITL 716
GT + I I + N V L + +G + K+ I+P H+W+ + A ++
Sbjct: 196 LGTTDYIMIREYIDVLPEN--VRKLIFIGFFIGFAVKIPIAPLHLWLLRAHVEAPTAGSV 253
Query: 717 LLSTTP-KLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIA 775
LL+ KL + I R I L + I+ + + S++ ++ +TQ + KR++A
Sbjct: 254 LLAGILLKLGGYGYI-RYNIGLFPDLCEYYFPIIGGICLISILYTGIATLTQLDVKRIVA 312
Query: 776 YSSIAHMGLMLFSIIS-----------IKTSHNNL---------IIFNSCDSGLFYI--- 812
YSSI+HM +++ + S + H + +I++ C + + Y
Sbjct: 313 YSSISHMNVIVLGLFSGVLQGIEGGIILMIGHGVVSGGLFLCIGVIYDRCKTRIVYAYNN 372
Query: 813 ITYIFAILGAFGVIILLKN----NTCNKTDELDIFIGLHQRN 850
+ ++ I+ +++L N T N EL IFIGL ++N
Sbjct: 373 LVHVMPIMAILFFLLVLGNIAFPITSNFVGELLIFIGLIKKN 414
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 18/233 (7%)
Query: 12 WEIVGMASYLLIGFWYDKPLAITANLKA--FLINRIGAMAKSAQFPLHTWLPDS-MEGPT 68
+ +G Y++I + D + N++ F+ IG K PLH WL + +E PT
Sbjct: 193 YSTLGTTDYIMIREYID---VLPENVRKLIFIGFFIGFAVKIPIAPLHLWLLRAHVEAPT 249
Query: 69 PASALIHAATMVTAGIFMITRMSPLF-ELSNTALSIILFIGAITAFFMGLLGIIQNDIKR 127
S L+ + G I LF +L II I I+ + G+ + Q D+KR
Sbjct: 250 AGSVLLAGILLKLGGYGYIRYNIGLFPDLCEYYFPIIGGICLISILYTGIATLTQLDVKR 309
Query: 128 IIAYSTLSQLGYMTVGL--GV-SAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIR 184
I+AYS++S + + +GL GV I ++ H LFL G +I + + +
Sbjct: 310 IVAYSSISHMNVIVLGLFSGVLQGIEGGIILMIGHGVVSGGLFLCIG-VIYDRCKTRIVY 368
Query: 185 NMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK-------DKKKIWIDYFN 230
L MPI I + +L + P S F + KK I I +F+
Sbjct: 369 AYNNLVHVMPIMAILFFLLVLGNIAFPITSNFVGELLIFIGLIKKNIIIAFFS 421
>sp|Q85FH5|NU4C_ADICA NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Adiantum
capillus-veneris GN=ndhD PE=2 SV=2
Length = 497
Score = 243 bits (619), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 228/404 (56%), Gaps = 12/404 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
WI+ ++++ LGIDGLSL + LT F T + L + I + + LI+ G IG F
Sbjct: 71 WINNIHLHWSLGIDGLSLGLVILTGFATTLATLSAWPITRNTRLFYFLMLIMYGGQIGLF 130
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYIS 344
+ D +LF+ +E LIP+++++ WGG R Y+A KF LYT GS+ +L++ + + +
Sbjct: 131 VSRDILLFFFMWEIELIPVYLLLCLWGGKRRLYSATKFVLYTAGGSIFLLVAALTMSFYG 190
Query: 345 NK--SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVIL 402
++ SFNI S ++ +++ F +A+A+K+PI+P HTWLPD H EA ++L
Sbjct: 191 SEVPSFNIQDLIHKSYPLSLEVLIYVGFLVAYAVKLPIFPFHTWLPDTHGEAHYSTCMLL 250
Query: 403 AAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSS 462
A ++LK+G YGL+R +L + A + + ++ I IIY SLI+M Q + K+ IAYSS
Sbjct: 251 AGVLLKMGGYGLIRINLELLTHAHFLLGSWMMLFGAIQIIYASLISMSQRNFKRRIAYSS 310
Query: 463 IAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIIN 522
I+HMGFVT+GI T+ I GAI+QMISH LI +A+F G Y++ +T L+ GG
Sbjct: 311 ISHMGFVTIGIGSFTETGINGAILQMISHGLIGAALFFLAGTCYDRTRTYLLDQLGGAAI 370
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVK-------FNFCIGVLTSTALIFS 575
+P F SLA+ +LPG SGF+ E ++ L V F I VL + +
Sbjct: 371 SMPKLFTMFSTLSLASLALPGMSGFVSELLVFLGVVTSNQYSFAFKAGITVLEGIGTVLT 430
Query: 576 AAYSLCLSKNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLI 619
Y L + + + + +N SI LG + + +C L+
Sbjct: 431 PIYLLSMLRQLFY---GYRFFDKSNPYSIDLGPRELFILICFLL 471
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 54 FPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSPLFELSNTAL----SIILFIGA 109
FP HTWLPD+ ++ ++ A ++ G + + R++ EL A S ++ GA
Sbjct: 229 FPFHTWLPDTHGEAHYSTCMLLAGVLLKMGGYGLIRIN--LELLTHAHFLLGSWMMLFGA 286
Query: 110 ITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLGVSAYT---VSIFHLMTHAFFKALL 166
I + L+ + Q + KR IAYS++S +G++T+G+G T +I +++H A L
Sbjct: 287 IQIIYASLISMSQRNFKRRIAYSSISHMGFVTIGIGSFTETGINGAILQMISHGLIGAAL 346
Query: 167 FLSAGSIIINMKHNQDIRNMGGLYKYMP-ITCITSLIGLLSLVGAPFFSGFYSK 219
F AG+ + + +GG MP + + S + L SL P SGF S+
Sbjct: 347 FFLAGT-CYDRTRTYLLDQLGGAAISMPKLFTMFSTLSLASL-ALPGMSGFVSE 398
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 687 IVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRLLIKCLLPLVINW 745
+V + KL I PFH W+PD + A +LL+ K+ + +I R+ ++ L
Sbjct: 219 LVAYAVKLPIFPFHTWLPDTHGEAHYSTCMLLAGVLLKMGGYGLI-RINLELLTHAHFLL 277
Query: 746 QKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSC 805
+++ +I ++ +++Q NFKR IAYSSI+HMG + I S + N I
Sbjct: 278 GSWMMLFGAIQIIYASLISMSQRNFKRRIAYSSISHMGFVTIGIGSFTETGINGAILQMI 337
Query: 806 DSGLFYIITYIFAILGAFGVIILLKNNTC---NKTDELDIFIGLHQRNPWCALIMMIFMF 862
GL G + TC +T LD G P L M
Sbjct: 338 SHGL-------------IGAALFFLAGTCYDRTRTYLLDQLGGAAISMP--KLFTMFSTL 382
Query: 863 SLA--GFPPTIGFYAKFFIFEKIFETQK 888
SLA P GF ++ +F + + +
Sbjct: 383 SLASLALPGMSGFVSELLVFLGVVTSNQ 410
>sp|B0JPG4|NU4C1_MICAN NAD(P)H-quinone oxidoreductase chain 4 1 OS=Microcystis aeruginosa
(strain NIES-843) GN=ndhD1 PE=3 SV=1
Length = 527
Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 219/372 (58%), Gaps = 8/372 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGLIIGAF 284
W+ ++ + LG DGLS+ I LT FIT + IL + + K + L++ G I F
Sbjct: 72 WLPEIDLRWSLGADGLSMPLIILTGFITTLAILAAWPVTFKPKLFYFLMLLMYGGQIAVF 131
Query: 285 CALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYL-YYI 343
D +LF++ +E L+P+++I+ WGG R YAA KF LYT GSL +L++ + + +Y
Sbjct: 132 AVQDLLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSLFILVAALTMAFYG 191
Query: 344 SNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILA 403
SF++++ Q++L+ F IA+ +K+PI+P+HTWLPDAH EA ++LA
Sbjct: 192 DTVSFDMVTIAGKDFPLKLQLFLYAGFLIAYGVKLPIFPLHTWLPDAHGEATAPAHMLLA 251
Query: 404 AIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSI 463
I+LK+G Y LLR ++ + PDA F+ +++ L +++IIY +L + Q ++K+ IAYSSI
Sbjct: 252 GILLKMGGYALLRMNMGMLPDAHAVFAPVLVILGVVNIIYAALTSFAQRNLKRKIAYSSI 311
Query: 464 AHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINV 523
+HMGFV +G+ T I GA++QMISH LI +++F +G Y++ T ++ GG+
Sbjct: 312 SHMGFVLIGMASFTDIGTSGAMLQMISHGLIGASLFFMVGCTYDRTHTLMLDEMGGVGKK 371
Query: 524 IPHFSVFFIIFSLANCSLPGTSGFIGEFMIILS-------AVKFNFCIGVLTSTALIFSA 576
+ + SLA+ +LPG SGF+ E M+ + + F I L + +I +
Sbjct: 372 MKKVFAMWTTCSLASLALPGMSGFVAELMVFIGFATSDAYSPTFRVIIVFLAAIGVILTP 431
Query: 577 AYSLCLSKNIIF 588
Y L + + I++
Sbjct: 432 IYLLSMLREILY 443
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 54 FPLHTWLPDSMEGPTPASALIHAATMVTAGIFMITRMSP--LFELSNTALSIILFIGAIT 111
FPLHTWLPD+ T + ++ A ++ G + + RM+ L + +++ +G +
Sbjct: 229 FPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALLRMNMGMLPDAHAVFAPVLVILGVVN 288
Query: 112 AFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGL------GVSAYTVSIFHLMTHAFFKAL 165
+ L Q ++KR IAYS++S +G++ +G+ G S ++ +++H A
Sbjct: 289 IIYAALTSFAQRNLKRKIAYSSISHMGFVLIGMASFTDIGTSG---AMLQMISHGLIGAS 345
Query: 166 LFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
LF G + H + MGG+ K M L+ + P SGF ++
Sbjct: 346 LFFMVGC-TYDRTHTLMLDEMGGVGKKMKKVFAMWTTCSLASLALPGMSGFVAE 398
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 21/238 (8%)
Query: 565 GVLTSTALIFSAAYSLCLSKNIIFVL------GQMIMISGNNLLSIYL--GLELMSLTLC 616
G +T+ A++ AA+ + + + L GQ+ + + +LL +L LEL+ + L
Sbjct: 96 GFITTLAIL--AAWPVTFKPKLFYFLMLLMYGGQIAVFAVQDLLLFFLVWELELVPVYLI 153
Query: 617 VLIASQKNNIFSSEAAIKYFILGILSSGFMLYGISIL--YGITGTLELQSIFNVIKLNNI 674
+ I K ++ AA K+ + S F+L + YG T + ++ +I K +
Sbjct: 154 LSIWGGKRRLY---AATKFILYTAGGSLFILVAALTMAFYGDTVSFDMVTIAG--KDFPL 208
Query: 675 NCSVLALSLLLIIVGLSFKLGISPFHMWVPDVYQGASIIITLLLSTTP-KLSLFVIIYRL 733
+ + LI G+ KL I P H W+PD + A+ +LL+ K+ + ++ R+
Sbjct: 209 KLQLFLYAGFLIAYGV--KLPIFPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALL-RM 265
Query: 734 LIKCLLPLVINWQKILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIIS 791
+ L + +L+IL + ++I +++ Q N KR IAYSSI+HMG +L + S
Sbjct: 266 NMGMLPDAHAVFAPVLVILGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGMAS 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.144 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,581,083
Number of Sequences: 539616
Number of extensions: 16305076
Number of successful extensions: 63352
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 50485
Number of HSP's gapped (non-prelim): 5472
length of query: 1178
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1049
effective length of database: 121,958,995
effective search space: 127934985755
effective search space used: 127934985755
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 67 (30.4 bits)