RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5224
(1178 letters)
>3rko_M NADH-quinone oxidoreductase subunit M; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 509
Score = 499 bits (1286), Expect = e-165
Identities = 147/375 (39%), Positives = 227/375 (60%), Gaps = 11/375 (2%)
Query: 225 WIDYFNIYYFLGIDGLSLWFIPLTAFITLIIILIS-LDIKKKLAEYMSAFLILSGLIIGA 283
WI F I L IDGLSL + LT + ++ +L S +I+K + + + G +IG
Sbjct: 71 WIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGV 130
Query: 284 FCALDGMLFYIFFEATLIPIFIIIGTWG-----GSNRSYAAIKFFLYTLMGSLLMLISMI 338
F A+D LF+ F+E L+P++ +I WG G R AA KFF+YT L+MLI+++
Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAIL 190
Query: 339 YLYYISNK-----SFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
L ++ +FN ++ + L + FFIAFA+K+P+ P+H WLPDAH +
Sbjct: 191 ALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250
Query: 394 APTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQID 453
APT GSV LA I+LK YGLLRFSLP+FP+AS F+ + + L +I I Y + +A Q D
Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTD 310
Query: 454 IKKLIAYSSIAHMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL 513
IK+LIAY+S++HMGFV + I+ ++++ QGA+IQMI+H L ++ +FI G LY ++ TR
Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRD 370
Query: 514 ISNFGGIINVIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALI 573
+ GG+ + + + F++A +PGT F+GEFMI+ + + I V+++ L+
Sbjct: 371 MRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430
Query: 574 FSAAYSLCLSKNIIF 588
F++ YSL + F
Sbjct: 431 FASVYSLAMLHRAYF 445
Score = 99.3 bits (248), Expect = 1e-21
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 50 KSAQFPLHTWLPDSM-EGPTPASALIHAATMVTAGIFMITRMS-PLF-ELSNTALSIILF 106
K PLH WLPD+ + PT S + A ++ + + R S PLF S I ++
Sbjct: 234 KMPVVPLHGWLPDAHSQAPTAGSVDL-AGILLKTAAYGLLRFSLPLFPNASAEFAPIAMW 292
Query: 107 IGAITAFFMGLLGIIQNDIKRIIAYSTLSQLGYMTVGLG---VSAYTVSIFHLMTHAFFK 163
+G I F+ + Q DIKR+IAY+++S +G++ + + AY ++ ++ H
Sbjct: 293 LGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSA 352
Query: 164 ALLFLSAGSIIINMKHNQDIRNMGGLYKYMPITCITSLIGLLSLVGAPFFSGF 216
A LF+ G + H +D+R MGGL+ M SL ++ +G P F
Sbjct: 353 AGLFILCG-QLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNF 404
Score = 94.7 bits (236), Expect = 3e-20
Identities = 60/266 (22%), Positives = 109/266 (40%), Gaps = 14/266 (5%)
Query: 631 AAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGL 690
AA K+FI S ML I L + FN +L N S LL++ +
Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFI 229
Query: 691 SF--KLGISPFHMWVPDVYQGASIIITLLLS-TTPKLSLFVIIYRLLIKCLLPLVINWQK 747
+F K+ + P H W+PD + A ++ L+ K + + ++ R + +
Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLL-RFSLPLFPNASAEFAP 288
Query: 748 ILLILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDS 807
I + L + + G A Q + KR+IAY+S++HMG +L +I + +
Sbjct: 289 IAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQL--------AYQG 340
Query: 808 GLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIFIGLHQRNPWCALIMMIFMFSLAGF 867
+ +I + + G F + L T ++ + GL + W + + F + G
Sbjct: 341 AVIQMIAHGLSAAGLFILCGQLYERI--HTRDMRMMGGLWSKMKWLPALSLFFAVATLGM 398
Query: 868 PPTIGFYAKFFIFEKIFETQKIWLLL 893
P T F +F I F+ + ++
Sbjct: 399 PGTGNFVGEFMILFGSFQVVPVITVI 424
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 377 bits (969), Expect = e-117
Identities = 134/403 (33%), Positives = 202/403 (50%), Gaps = 71/403 (17%)
Query: 1 MSNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFLINRIG-------------- 46
+++NL ++LGWE VG+ SYLLIGF+Y P A +KAF++ R+G
Sbjct: 132 LADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNE 191
Query: 47 ----------------------------------AMAKSAQFPLHTWLPDSMEGPTPASA 72
A+ KSAQ PL TWL D+M GPTP SA
Sbjct: 192 LGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSA 251
Query: 73 LIHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMGLLGIIQNDIKRIIAYS 132
LIHAATMVTAG+++I R LF ++ L ++ +GA+T G ++Q DIKR++AYS
Sbjct: 252 LIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYS 311
Query: 133 TLSQLGYMTVGLGVSAYTVSIFHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGGLYKY 192
T+SQ+GYM + LGV A+ +IFHLMTHAFFKALLFL++GS+I+ H Q+I MGGL K
Sbjct: 312 TMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKS 371
Query: 193 MPITCITSLIGLLSLVGAPFFS-GFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTAFI 251
+P+ + L+G +L P + GF+SKD + + N + L + GL + AF+
Sbjct: 372 IPLVYLCFLVGGAALSALPLVTAGFFSKD-EILAGAMANGHINLMVAGL------VGAFM 424
Query: 252 TLI-----IILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFII 306
T + I ++ ++ A + LI+ + F A ++P
Sbjct: 425 TSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILS-------TFVGALIVPPL-- 475
Query: 307 IGTWGGSNRSYAAIKFFLYTLMGSLLML-ISMIYLYYISNKSF 348
G + L G + ++ I + ++ ++
Sbjct: 476 QGVLPQTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTL 518
Score = 77.0 bits (190), Expect = 2e-14
Identities = 92/411 (22%), Positives = 176/411 (42%), Gaps = 46/411 (11%)
Query: 199 TSLIGLLSLVGAPFFSGFYSKDKKKI------WI--DYFNIYYFLGIDGLSLWFIPLTAF 250
+GL +LV A F++ ++ W+ FNI + L +DGLSL + +
Sbjct: 35 VGSVGLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTG 94
Query: 251 ITLIIILISLDIKKKLAEYMSA------FLILSGLIIGAFCAL----DGMLFYIFFEATL 300
+ +I + + YM F + L I + L + +L Y+ +E
Sbjct: 95 VGFLIHMYAS-------WYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVG 147
Query: 301 IPIFIIIGTW-GGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILSWHQLSIT 359
+ +++IG + AA+K F+ T +G + + ++ LY + N +L+
Sbjct: 148 LCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELG-TLNFREMVELAPA 206
Query: 360 KIEQIWLFITF-----FIAFAIKIPIWPMHTWLPDAHVEAPTEGS-VILAAIMLKLGCYG 413
+ + K P+ TWL DA + PT S +I AA M+ G Y
Sbjct: 207 HFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADA-MAGPTPVSALIHAATMVTAGVYL 265
Query: 414 LLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMG--FVTL 471
+ R +F + +L+ + ++++ A+VQ DIK+++AYS+++ +G F+ L
Sbjct: 266 IARTH-GLF-LMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLAL 323
Query: 472 GIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRL-ISNFGGIINVIPHFSVF 530
G+ + AI +++HA + +F++ G + I GG+ IP +
Sbjct: 324 GV-----QAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLC 378
Query: 531 FIIFSLANCSLPG-TSGFIGEFMIILSA-VKFNFCIGVLTSTALIFSAAYS 579
F++ A +LP T+GF + I+ A + + V ++ Y+
Sbjct: 379 FLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYT 429
Score = 75.4 bits (186), Expect = 5e-14
Identities = 71/336 (21%), Positives = 147/336 (43%), Gaps = 50/336 (14%)
Query: 587 IFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILSSGFM 646
+F+ ++++ +NLL +YLG E + L +LI + + AA+K F++ + F+
Sbjct: 122 LFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFL 181
Query: 647 LYGISILYGITGTLELQSIFNVI-KLNNINCSVLALSLLLIIVGLSFKLGISPFHMWVPD 705
+ + ILY GTL + + + ++L + L+++ G K P W+ D
Sbjct: 182 AFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLAD 241
Query: 706 VYQGASIIITLLLSTTPKLSL-----------FVIIYRLLIKCLLPLVINWQKILLILAI 754
G TP +L ++I + + P V ++ I+
Sbjct: 242 AMAGP----------TPVSALIHAATMVTAGVYLIARTHGLFLMTPEV---LHLVGIVGA 288
Query: 755 FSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIIT 814
+L++ +A+ Q + KR++AYS+++ +G M ++ + D+ +F+++T
Sbjct: 289 VTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGV-----------QAWDAAIFHLMT 337
Query: 815 YIF--AI--LGAFGVIILLKNNTCNKTDELDIFI--GLHQRNPWCALIMMIFMFSLAGFP 868
+ F A+ L + VI+ E +IF GL + P L ++ +L+ P
Sbjct: 338 HAFFKALLFLASGSVILACH-------HEQNIFKMGGLRKSIPLVYLCFLVGGAALSALP 390
Query: 869 P-TIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
T GF++K I I L++ ++ + + +
Sbjct: 391 LVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTS 426
>3rko_N NADH-quinone oxidoreductase subunit N; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 485
Score = 338 bits (868), Expect = e-105
Identities = 115/386 (29%), Positives = 203/386 (52%), Gaps = 15/386 (3%)
Query: 527 FSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKN- 585
+ + SL G + A+ + + + + F+ + + N
Sbjct: 43 IGLNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK 102
Query: 586 ------IIF-VLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFIL 638
++ LG +++ + N+L S++LG+EL+SL L L+ S EA+IKY IL
Sbjct: 103 DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTIL 162
Query: 639 GILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALSLLLIIVGLSFKLGISP 698
+S F+L+G++++Y +G L ++ + +N +L L+IVGL FKL + P
Sbjct: 163 SAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVP 222
Query: 699 FHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLILAIFSLI 758
FH+W PDVYQGA ++ L+T K+++F ++ RL + + + +L I+A S+I
Sbjct: 223 FHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASII 282
Query: 759 IGNVSAITQYNFKRMIAYSSIAHMGLMLFSIISIKTSHNNLIIFNSCDSGLFYIITYIFA 818
GN+ A++Q N KR++ YSSI+H+G +L ++I+++T ++ ++ Y+ Y+F+
Sbjct: 283 FGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSM------EAVGVYLAGYLFS 336
Query: 819 ILGAFGVIILLKNNTCNK-TDELDIFIGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKF 877
LGAFGV+ L+ + D L + GL P A +M + M SLAG P T+GF KF
Sbjct: 337 SLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKF 396
Query: 878 FIFEKIFETQKIWLLLLIIMCSLIGA 903
++ + WL+ +++ S IG
Sbjct: 397 YVLAVGVQAHLWWLVGAVVVGSAIGL 422
Score = 118 bits (297), Expect = 7e-28
Identities = 71/354 (20%), Positives = 147/354 (41%), Gaps = 17/354 (4%)
Query: 237 IDGLSLWFIPLTAFITLIIILISLDIKKKLAEYMSAFLILSGL-IIGAF---CALDGMLF 292
+DG ++ + L +L + + + F +L + +G A
Sbjct: 69 VDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASL 128
Query: 293 YIFFEATLIPIFIIIGTWGGSNRSY-AAIKFFLYTLMGSLLMLISMIYLYYISNKSFNIL 351
++ E +P+F ++G RS A+IK+ + + S +L M +Y S + +
Sbjct: 129 FLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSG-DLSFV 187
Query: 352 SWHQLSITKIEQIWLFIT----FFIAFAIKIPIWPMHTWLPDAHVEAPTEGSVILAAIML 407
+ + + L + + K+ + P H W PD + AP S LA
Sbjct: 188 ALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASK 247
Query: 408 KLGCYGLLRFSLPIFPDASYYFSNLIITLSLISIIYISLIAMVQIDIKKLIAYSSIAHMG 467
++R L S ++ ++ SII+ +L+A+ Q +IK+L+ YSSI+H+G
Sbjct: 248 IAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLG 307
Query: 468 FVTLGIFML--TKISIQGAIIQMISHALISSAMFISIGFL---YNQMKTRLISNFGGIIN 522
++ + + L ++S++ + + + S F + + Y + ++ G+
Sbjct: 308 YLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFW 367
Query: 523 VIPHFSVFFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSA 576
P + + L+ +P T GFIG+F ++ V+ + L ++ SA
Sbjct: 368 HRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHL--WWLVGAVVVGSA 419
Score = 98.6 bits (246), Expect = 2e-21
Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 56/274 (20%)
Query: 2 SNNLFQLFLGWEIVGMASYLLIGFWYDKPLAITANLKAFL-------------------- 41
+N+L LFLG E++ + + L+G+ + + ++ A++K +
Sbjct: 122 ANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQS 181
Query: 42 ----INRIGAMA-----------------------KSAQFPLHTWLPDSMEG-PTPASAL 73
+G K + P H W PD +G P P S
Sbjct: 182 GDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTF 241
Query: 74 IHAATMVTAGIFMITRMSPLFELSNTALSIILFIGAITAFFMG-LLGIIQNDIKRIIAYS 132
+ A+ + ++ + A+ ++L I A + G L+ + Q +IKR++ YS
Sbjct: 242 LATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYS 301
Query: 133 TLSQLGYMTVGL-----GVSAYTVSIFHLMTHAF--FKALLFLSAGSIIINMKHNQDIRN 185
++S LGY+ V L G + +L + F A +S S + +
Sbjct: 302 SISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFS 361
Query: 186 MGGLYKYMPITCITSLIGLLSLVGAPFFSGFYSK 219
GL+ + PI + +LSL G P GF K
Sbjct: 362 YRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGK 395
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 324 bits (832), Expect = e-102
Identities = 95/251 (37%), Positives = 159/251 (63%), Gaps = 1/251 (0%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
A++AARK+ +I + + + +K +FV N++KA+E +I + +YP + + +
Sbjct: 8 AVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITE 67
Query: 985 KSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTA 1044
+S L + + W+IDPLD TNF P + +SIA++ K + +V+YDP+RN+LFTA
Sbjct: 68 ESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTA 127
Query: 1045 IKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIF-QIITKCKNLRNIGT 1103
+G GA LN R+R + ++ ++ T F FK + Y I ++ +C + R G+
Sbjct: 128 TRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYATTYINIVGKLFNECADFRATGS 187
Query: 1104 SSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYTGDIVAGNQ 1163
++L+LAYVA+G++DGFFE GL+PW+ AAG LL+ E+GGI+S+F G NY+ TG+IVAGN
Sbjct: 188 AALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGHNYMLTGNIVAGNP 247
Query: 1164 KIFSQIISLIN 1174
++ +++ +
Sbjct: 248 RVVKAMLANMR 258
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
Length = 267
Score = 322 bits (827), Expect = e-102
Identities = 83/251 (33%), Positives = 149/251 (59%), Gaps = 1/251 (0%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
++AA K+ + R E++NL+ K ++V ++ +EKII L P + FL++
Sbjct: 14 MVQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGFLME 73
Query: 985 KSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTA 1044
+S + ++++ +I+DPLD TNF H P + +SIAL+ + +I VIY+PI ++LFTA
Sbjct: 74 ESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTA 133
Query: 1045 IKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIF-QIITKCKNLRNIGT 1103
+G GA+ N++R RV+ R ++ D +I T Y ++ + +R GT
Sbjct: 134 ERGSGAFFNDRRCRVSARRRLEDCVIATGMPHLGRPGHGTYLIELRNVMAEVSGIRRFGT 193
Query: 1104 SSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYTGDIVAGNQ 1163
++L+LAYVA+G+ DGF+E L+ W++AAG L++ E+GG +++ +G + +I+AGN+
Sbjct: 194 AALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNIIAGNE 253
Query: 1164 KIFSQIISLIN 1174
I ++ +
Sbjct: 254 HIRIKLERALK 264
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 302 bits (776), Expect = 8e-95
Identities = 60/250 (24%), Positives = 135/250 (54%), Gaps = 9/250 (3%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
+IK RK ++ ++N+ ++ +++ V I++ ++++I + +P + +
Sbjct: 7 SIKLLRKVGHLLMIHWGRVDNVE-KKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAE 65
Query: 985 KSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTA 1044
+ + + +WIIDP+D NF H P + IS+A + ++ V++ P N+ A
Sbjct: 66 EG---IFEKGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNETLYA 122
Query: 1045 IKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGTS 1104
+G GA+ N +RIRV++ + + + T I ++ + + +R +G++
Sbjct: 123 EEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGK-----FIERMEKRTRRIRILGSA 177
Query: 1105 SLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYTGDIVAGNQK 1164
+LN AYV +G++D F + PW+IAAG +++ E+GG++++F G++ ++ + + N
Sbjct: 178 ALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSNGL 237
Query: 1165 IFSQIISLIN 1174
I +++ ++N
Sbjct: 238 IHDEVVKVVN 247
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 301 bits (773), Expect = 3e-94
Identities = 67/251 (26%), Positives = 126/251 (50%), Gaps = 5/251 (1%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFLIK 984
A AA ++ +++ EEK ++FV ++K SE+ I +++ +P + + +
Sbjct: 11 AKIAALAGGQVLKENFGKVKKENIEEKGEKDFVSYVDKTSEERIKEVILKFFPDHEVVGE 70
Query: 985 KSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFTA 1044
+ +E W IDPLD N+ + FP + +S+ L + ++ +Y P + L+
Sbjct: 71 EMG-AEGSGSEYRWFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIVGAVYLPYFDKLYWG 129
Query: 1045 IKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQ-IITKCKNLRNIGT 1103
KG GAY+N KRI+V + A + F ++ + Y IF+ + + ++R G
Sbjct: 130 AKGLGAYVNGKRIKVKDNESLKHAGVVYGFPSRSRRDISIYLNIFKDVFYEVGSMRRPGA 189
Query: 1104 SSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYTGDIVAGNQ 1163
++++L VA G DG E +KPW+I AG +++ E+GG+ + DI+AGN+
Sbjct: 190 AAVDLCMVAEGIFDGMMEFEMKPWDITAGLVILKEAGGVYTLV---GEPFGVSDIIAGNK 246
Query: 1164 KIFSQIISLIN 1174
+ I+ +
Sbjct: 247 ALHDFILQVAK 257
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural genomics,
structural genomics consortium, SGC, hydrolase; 2.40A
{Homo sapiens} PDB: 2czh_A 2czi_A 2czk_A 2ddk_A
Length = 273
Score = 296 bits (761), Expect = 2e-92
Identities = 68/258 (26%), Positives = 127/258 (49%), Gaps = 13/258 (5%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFL-- 982
A++ A ++ II + E + + + + V + E +I L +PS+ F+
Sbjct: 8 AVQLALRAGQIIRKALTEEKRVS-TKTSAADLVTETDHLVEDLIISELRERFPSHRFIAE 66
Query: 983 ----IKKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIR 1038
LT+ WIIDP+D NF H FP +SI ++++ VIY
Sbjct: 67 EAAASGAKCVLTH---SPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTE 123
Query: 1039 NDLFTAIKGCGAYLNEKRIRVNKRNKINDALIGTDF-SFKNNINSEEYAKIFQ--IITKC 1095
L+T +G GA+ N +R+RV+ ++ AL+ T+ ++ + + + + K
Sbjct: 124 ERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLHAKA 183
Query: 1096 KNLRNIGTSSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYT 1155
+R IG+S+L L ++ASG D +++ GL W++AA +++I E+GGI+ + G L
Sbjct: 184 HGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMA 243
Query: 1156 GDIVAGNQKIFSQIISLI 1173
+VA + + + +I+
Sbjct: 244 CRVVAASTREMAMLIAQA 261
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen; 1.30A
{Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A 1ime_A
1imf_A 2hhm_A 1awb_A
Length = 277
Score = 293 bits (753), Expect = 2e-91
Identities = 58/253 (22%), Positives = 127/253 (50%), Gaps = 7/253 (2%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSYAFL-- 982
A+ A ++ ++ N+ + + V ++ EK++ + YPS++F+
Sbjct: 12 AVTLAGQAGEVVREALKNEMNIM-VKSSPADLVTATDQKVEKMLITSIKEKYPSHSFIGE 70
Query: 983 -IKKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDL 1041
+ + + WIIDP+D TNF H FP +SI K++ ++Y + + +
Sbjct: 71 ESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCLEDKM 130
Query: 1042 FTAIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEE--YAKIFQIIT-KCKNL 1098
+T KG GA+ N ++++V+ + I +L+ T+ + + I +++ +
Sbjct: 131 YTGRKGKGAFCNGQKLQVSHQEDITKSLLVTELGSSRTPETVRIILSNIERLLCLPIHGI 190
Query: 1099 RNIGTSSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYTGDI 1158
R +GT++LN+ VA+G D ++E G+ W++A +++ E+GG++ + G L + +
Sbjct: 191 RGVGTAALNMCLVAAGAADAYYEMGIHCWDVAGAGIIVTEAGGVLLDVTGGPFDLMSRRV 250
Query: 1159 VAGNQKIFSQIIS 1171
+A + K ++ I+
Sbjct: 251 IASSNKTLAERIA 263
>3t0j_A Impase II, inositol monophosphatase family protein; FIG superfamily,
hydrolase; HET: PG4; 2.59A {Staphylococcus aureus}
Length = 283
Score = 285 bits (732), Expect = 3e-88
Identities = 62/253 (24%), Positives = 122/253 (48%), Gaps = 9/253 (3%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYEN-FVFNINKASEKIITKILFNTYPSYAFLI 983
A +++ + I + + NL E K N V N++KA+E I + TYP++ L
Sbjct: 15 AQGLIQEAGIRIKQLMEQ--NLTIETKSNPNDLVTNVDKATEDFIFDTILETYPNHQVLG 72
Query: 984 KKSNYLT-NFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLF 1042
++ + + +W++DP+D NF H + ISI + + +YD + + L+
Sbjct: 73 EEGHGHDIDTSKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVLY 132
Query: 1043 TAIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQ-IITKCKNLRNI 1101
A G GAY + ++ + + ++IG + ++ +IF+ I+ ++ R
Sbjct: 133 HAKVGEGAYRGSQPLKPLNDSNLRQSIIGINPNWLTK---PILGEIFKEIVNDSRSARAY 189
Query: 1102 GTSSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYT-GDIVA 1160
G+++L + VA+G L+ + L+PW+ A G +++ E G SN GE + I+
Sbjct: 190 GSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYEVNGQASNLLGEPLTISGPNSILV 249
Query: 1161 GNQKIFSQIISLI 1173
GN+ + +I +
Sbjct: 250 GNRGLHQEISNDY 262
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG superfamily
protein, hydrolase; HET: SRT; 2.37A {Staphylococcus
aureus} PDB: 3qmf_A
Length = 273
Score = 279 bits (717), Expect = 3e-86
Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 12/257 (4%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYEN-FVFNINKASEKIITKILFNTYPSYAFLI 983
++ +I + +E+ E K++ V N++K ++ + L +P + L
Sbjct: 21 ICSWLKQIDNVIPQLIMEMTT---ETKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLA 77
Query: 984 K-KSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLF 1042
+ KSN + E ++WI+DP+D N YCI +A + + S +YD L+
Sbjct: 78 EEKSNAMITNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLY 137
Query: 1043 TAIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIG 1102
AI+G GA+ N ++ K+ DA+I + N + + + R +G
Sbjct: 138 KAIRGEGAFCNGIKMEEPPSLKLEDAIISFNAQVMN------LDTVQDLFDASFSYRLVG 191
Query: 1103 TSSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEK-NYLYTGDIVAG 1161
L+ VA G+ KPW+IAA L ++ G+ ++L +
Sbjct: 192 ACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIIS 251
Query: 1162 NQKIFSQIISLINLNKN 1178
N+ ++ ++N N
Sbjct: 252 NKACHETVLKILNANGG 268
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory
for structural genomics hyperthermophIle, PSI; 2.80A
{Pyrococcus furiosus} SCOP: e.7.1.1
Length = 262
Score = 274 bits (702), Expect = 2e-84
Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 23/258 (8%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYEN-FVFNINKASEKIITKILFNTYPSYAFLI 983
AI I + + + ++K +E +I + + +
Sbjct: 18 AIDIISDFETTIMPFFGNPDGGKLVKISPSGDETKLVDKLAEDLILSRITELGVN--VVS 75
Query: 984 KKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFT 1043
++ + N E+E I+DPLD NF P + +S+A+ +K + +++IY+P+ F
Sbjct: 76 EEVGVIDN-ESEYTVIVDPLDGSYNFIAGIPFFALSLAVFKKDKPIYAIIYEPMTERFFE 134
Query: 1044 AIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGT 1103
I G GA+LN KRI+V K ++ + I+ K R +G
Sbjct: 135 GIPGEGAFLNGKRIKVRKTPDEKPSISFYSRGKGHE-----------IVKHVKRTRTLGA 183
Query: 1104 SSLNLAYVASGKLDGFFE--KGLKPWNIAAGSLLIIESGGIISNFKGEK-----NYLYTG 1156
+L LAY+A G LDG + K ++P +IAAG+++ E+G +I + G+ N
Sbjct: 184 IALELAYLAMGALDGVVDVRKYVRPTDIAAGTIIAKEAGALIKDSAGKDIDISFNATDRL 243
Query: 1157 DIVAGN-QKIFSQIISLI 1173
D++A N +++ I+SL+
Sbjct: 244 DVIAVNSEELLKTILSLL 261
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
hydrolase; 2.60A {Mycobacterium tuberculosis}
Length = 299
Score = 274 bits (704), Expect = 4e-84
Identities = 56/264 (21%), Positives = 123/264 (46%), Gaps = 16/264 (6%)
Query: 925 AIKAA-----RKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPSY 979
A +AA R++ + + + + + + V ++ +E+++ L P
Sbjct: 19 AAEAAAFVRGRRAEVFGISRAGDGDGAVRAKSSPTDPVTVVDTDTERLLRDRLAQLRPGD 78
Query: 980 AFLI----KKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYD 1035
L ++ + W++DP+D NF + P Y +SI + + D
Sbjct: 79 PILGEEGGGPADVTATPSDRVTWVLDPIDGTVNFVYGIPAYAVSIGAQVGGITVAGAVAD 138
Query: 1036 PIRNDLFTAIKGCGAYLNEKR----IRVNKRNKINDALIGTDFSFKNNINSEEYAKIF-Q 1090
+++A G GA+L ++R +R ++++ AL+GT F + E+ A++
Sbjct: 139 VAARTVYSAATGLGAHLTDERGRHVLRCTGVDELSMALLGTGFGYSVRCR-EKQAELLAH 197
Query: 1091 IITKCKNLRNIGTSSLNLAYVASGKLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEK 1150
++ +++R IG+++L+L VA+G+LD ++E G++ W+ AAG+L+ E+G +
Sbjct: 198 VVPLVRDVRRIGSAALDLCMVAAGRLDAYYEHGVQVWDCAAGALIAAEAGARVLLSTPR- 256
Query: 1151 NYLYTGDIVAGNQKIFSQIISLIN 1174
+VA I ++++ +
Sbjct: 257 AGGAGLVVVAAAPGIADELLAALQ 280
>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P,
hydrolase; HET: IPD; 2.30A {Methanocaldococcus
jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
Length = 252
Score = 264 bits (677), Expect = 5e-81
Identities = 53/258 (20%), Positives = 108/258 (41%), Gaps = 21/258 (8%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYEN-FVFNINKASEKIITKILFNTYPSYAFLI 983
A++ I + +K SE I K L + +
Sbjct: 7 GKNIAKEIEKEILPYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYL--KSLNVNIVS 64
Query: 984 KKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFT 1043
++ + N +E +IDP+D NF + P + + + + + + Y+ + +
Sbjct: 65 EELGVIDN-SSEWTVVIDPIDGSFNFINGIPFFAFCFGVFKNNEPYYGLTYEFLTKSFYE 123
Query: 1044 AIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGT 1103
A KG GAYLN ++I+V N + ++ + + K + ++ K K +R G
Sbjct: 124 AYKGKGAYLNGRKIKVKDFNP--NNIVISYYPSKKI-------DLEKLRNKVKRVRIFGA 174
Query: 1104 SSLNLAYVASGKLDGFFE--KGLKPWNIAAGSLLIIESGGIISNFKGEK-----NYLYTG 1156
L + YVA G LD F+ ++ +IA+ ++ E+G +I++ G++ N
Sbjct: 175 FGLEMCYVAKGTLDAVFDVRPKVRAVDIASSYIICKEAGALITDENGDELKFDLNATDRL 234
Query: 1157 DIVAGN-QKIFSQIISLI 1173
+I+ N +++ I+ L+
Sbjct: 235 NIIVANSKEMLDIILDLL 252
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; 1.30A {Pyrococcus horikoshii}
SCOP: e.7.1.1
Length = 254
Score = 262 bits (671), Expect = 4e-80
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 24/259 (9%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYEN-FVFNINKASEKIITKILFNTYPSYAFLI 983
AI R I + ++K +E II + + +
Sbjct: 10 AIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGVN--VVS 67
Query: 984 KKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPIRNDLFT 1043
++ + ++ ++DPLD NF + P + +S+A+ +K ++ IY+PI L+
Sbjct: 68 EEIGRIDQ-GSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYE 126
Query: 1044 AIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCKNLRNIGT 1103
I G G+YLN ++I+V + + T II K K R +G
Sbjct: 127 GIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTK------------IIDKVKRTRTLGA 174
Query: 1104 SSLNLAYVASGKLDGFFE--KGLKPWNIAAGSLLIIESGGIISNFKGEK-----NYLYTG 1156
+L LAY+A G LD + L+P +IAAG ++ E+G I+ + G+ +
Sbjct: 175 IALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEKV 234
Query: 1157 DIVAGN-QKIFSQIISLIN 1174
+I+A N +++ I+ I
Sbjct: 235 NIIAANNEELLETILRSIE 253
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol monophosphatase;
dual activity, archaeal phosphatase, APO- form,
hydrolase; 1.80A {Archaeoglobus fulgidus} SCOP: e.7.1.1
PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 245 bits (627), Expect = 4e-74
Identities = 53/267 (19%), Positives = 104/267 (38%), Gaps = 37/267 (13%)
Query: 924 EAIKAARKSALIINRGSLEL----ENLRFEEKKYENFVFNINKASEKIITKILFNTYPSY 979
+A++ +R+ A + + + K ++ +E +IL
Sbjct: 5 DALRISREIAGEVRKAIASMPLRERVKDVGMGKDGTPTKAADRVAEDAALEIL--RKERV 62
Query: 980 AFLIKKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHS---VIYDP 1036
+ ++S L + +DPLD N + P Y +S+ ++ + +Y+
Sbjct: 63 TVVTEESGVLGE--GDVFVALDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFGYVYNL 120
Query: 1037 IRNDLFTAIKGCGAYLNEKRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIITKCK 1096
D + A GAY N +RI V+ ++ I K K
Sbjct: 121 ATGDEYYA-DSSGAYRNGERIEVSDAEELYCNAIIYYPDRKF---------------PFK 164
Query: 1097 NLRNIGTSSLNLAYVASGKLDGFFE----KGLKPWNIAAGSLLIIESGGIISNFKGEK-- 1150
+R G+++ L + A G D F + K L+ ++ AAG + ++GG ++ GE
Sbjct: 165 RMRIFGSAATELCFFADGSFDCFLDIRPGKMLRIYDAAAGVFIAEKAGGKVTELDGESLG 224
Query: 1151 ----NYLYTGDIVAGNQKIFSQIISLI 1173
+ +IVA N+K+ +++ LI
Sbjct: 225 NKKFDMQERLNIVAANEKLHPKLLELI 251
>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol,
hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae}
SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
Length = 357
Score = 115 bits (288), Expect = 1e-27
Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 42/215 (19%)
Query: 997 IWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVIYDPI----------------RND 1040
W +DP+D F Q+ + +AL + I P
Sbjct: 138 FWCLDPIDGTKGFLRG-EQFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDLKGHESFGY 196
Query: 1041 LFTAIKGCGAYLNE-------KRIRVNKRNKINDALIGTDFSFKNNINSEEYAKIFQIIT 1093
+F A++G GA+ + +I V D + ++ + +E I +
Sbjct: 197 IFRAVRGLGAFYSPSSDAESWTKIHVRHLKDTKDMITLEGVEKGHS-SHDEQTAIKNKL- 254
Query: 1094 KCKNLRNIGTSSLNLAYVASGKLDGFF------EKGLKPWNIAAGSLLIIESGGIISNFK 1147
++ S +A G D + K W+ AAG++++ E+GGI ++
Sbjct: 255 NISKSLHLD-SQAKYCLLALGLADVYLRLPIKLSYQEKIWDHAAGNVIVHEAGGIHTDAM 313
Query: 1148 -------GEKNYLYTGDIVA--GNQKIFSQIISLI 1173
G L T ++A G +++ ++S
Sbjct: 314 EDVPLDFGNGRTLATKGVIASSGPRELHDLVVSTS 348
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Length = 308
Score = 111 bits (280), Expect = 5e-27
Identities = 37/257 (14%), Positives = 80/257 (31%), Gaps = 35/257 (13%)
Query: 925 AIKAARKSALIINRGSLELENLRFEEKKYEN-FVFNINKASEKIITKILFNTYPSYAFL- 982
A A+K+ I+ R + +L +K ++ + I L +P +
Sbjct: 15 AYSIAQKAGTIV-RCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIG 73
Query: 983 -------------------------IKKSNYLTNFENENIWIIDPLDNITNFSHNF-PQY 1016
S Y E + + +DP+D ++
Sbjct: 74 EEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLDNV 133
Query: 1017 CISIALKQKKQITHSVIYDPIRNDLFTAIKGCGAYLNEKRIRVNKRNKINDALIGTDF-- 1074
+ I + + + +I P N G + ++ +A G
Sbjct: 134 TVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIIT 193
Query: 1075 SFKNNINSEEYAKIFQIITKCKNLRNIGTSSLNLAYVASGKLDG--FFEKGLKPWNIAAG 1132
+ +++ N I + N+ +G + + + GK F G K W+ A
Sbjct: 194 TTRSHSNKLVTDCIAAM--NPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAP 251
Query: 1133 SLLIIESGGIISNFKGE 1149
+++ GG +++ G
Sbjct: 252 EVILHAVGGKLTDIHGN 268
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 65.7 bits (161), Expect = 1e-11
Identities = 58/260 (22%), Positives = 98/260 (37%), Gaps = 34/260 (13%)
Query: 921 YIVEAIKAARK-SALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNT-YP- 977
+ AI AA K I++ + E K + + ++ + + I IL T +P
Sbjct: 23 NAMAAIDAALKAGEKILSIYEDPKSDFEIERKADNSPLTIADRKAHEAIVAILNETPFPV 82
Query: 978 ----SYAFLIKKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALKQKKQITHSVI 1033
WI+DPLD F ++ ++IAL Q VI
Sbjct: 83 LSEEGKHMDYAVRRGWDTL-----WIVDPLDGTKEFIKRNGEFTVNIALVQNAVPVMGVI 137
Query: 1034 YDPIRNDLFTAIKGCGAYLNE-----------KRIRVNKRNKINDALIGTDFSF---KNN 1079
Y P++ +L+ A++G GAY + + K ++ A F +++
Sbjct: 138 YVPVKKELYFAVEGTGAYKCSGIVGLEDEGVTLQQMIEKSERMPLADARDHFIAVASRSH 197
Query: 1080 INSEEYAKIFQIITKCKN--LRNIGTSSLNLAYVASGKLDGFFEKGLKP---WNIAAGSL 1134
+ E I + K N L + G SS+ + VA GK D + P W+ AAG
Sbjct: 198 LTPETETYIADLKKKHGNVELISSG-SSIKICLVAEGKADVYPRFA--PTMEWDTAAGHA 254
Query: 1135 LIIESGGIISNFKGEKNYLY 1154
+ +G + E+ Y
Sbjct: 255 IARAAGMEVYQAGKEEPLRY 274
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 53.1 bits (127), Expect = 3e-07
Identities = 43/283 (15%), Positives = 74/283 (26%), Gaps = 44/283 (15%)
Query: 908 IIKDCPGVGSPGIYIVEAIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKI 967
+ PG+G I+ E+ + I + L E + V N NK + +
Sbjct: 65 MENKFPGLG-KKIFGEESNELTNDLGEKI---IMRLGPTEEETVALLSKVLNGNKLASEA 120
Query: 968 ITKILFNTYPSYAFLIKKSNYLTNFENENIWIIDPLD--------------NITNFSHNF 1013
+ K++ + + IW+ DP+D N F
Sbjct: 121 LAKVVHQDVFFSDPALDSVEINIPQDILGIWV-DPIDSTYQYIKGSADITPNQGIFPSGL 179
Query: 1014 PQY--CISIALKQKKQITHSVIYDPIRNDLFT----------AIKGCGAYLNEKRIRVNK 1061
I + Q VI P + + G ++ V+
Sbjct: 180 QCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVST 239
Query: 1062 RNKINDALIGTDFSFKNNIN----------SEEYAKIFQIITKCKNLRNIGTSSLNLAYV 1111
R+ GT E + + R G + V
Sbjct: 240 RSNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAG-AGYKSLCV 298
Query: 1112 ASGKLDG--FFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNY 1152
G D F E W+ A ++ GG + + K
Sbjct: 299 ILGLADIYIFSEDTTFKWDSCAAHAILRAMGGGMVDLKECLER 341
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 6e-06
Identities = 85/562 (15%), Positives = 179/562 (31%), Gaps = 164/562 (29%)
Query: 53 QFPLHTWLPDSMEGPT----PASA-------LIHAATMVTAGIFMITRMSPLFELSNTAL 101
QF + LP+ EG P + L + +++V ++ ++ N L
Sbjct: 36 QF--NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS-----KVGQFDQVLNLCL 88
Query: 102 ----SIILF---IGAITAFFMGLLGIIQNDIKRII-AYSTLSQLGYMTVGLGVSAYTVSI 153
+ L I A+ A + K +I Y + +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-------ITARIMAKRPFD--- 138
Query: 154 FHLMTHAFFKALLFLSAGSIIINMKHNQDIRNMGG-------------LYK-YMPITCIT 199
A F+A+ G+ + + GG LY+ Y + +
Sbjct: 139 -KKSNSALFRAV---GEGNAQL-------VAIFGGQGNTDDYFEELRDLYQTYHVL--VG 185
Query: 200 SLIG-----LLSLVGAPF-FSGFYSK--DKKKIWIDYFN----IYYFLGIDGLSLWFIPL 247
LI L L+ +++ + + W++ + Y L I +S I +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSI-PISCPLIGV 243
Query: 248 TAFITLIIILISLDIK-KKLAEYMSAFLILS-GLIIGAFCAL--DGMLFYIFFEATLIPI 303
++ L +L Y+ S GL+ A F++ + +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 304 FIIIG-----TWGGSNRSYAAIKFFLY------TLM----G-SLLMLISMI-----YL-- 340
F I G + ++ + ++ L + M + + + +L
Sbjct: 304 FFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 341 ---YYIS--N--KSFNI----LSWHQLSI--------TKIEQ--IWLF----ITFFIAFA 375
IS N K+ + S + L++ + ++Q I F + F F
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRF- 420
Query: 376 IKIPIW-PMHT-WLPDAH---VEAPTEGSVILAAIMLKLGCYGLLRFSLPIFP--DASYY 428
+P+ P H+ L A + + +V A +++ P++ D S
Sbjct: 421 --LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----------PVYDTFDGS-- 466
Query: 429 FSNL-IITLSLISIIYISLIAMVQIDIKKLIAYSSIAHM-----GFVTLGIFMLTKISIQ 482
+L +++ S+ I + I + + + H+ G + G+ +LT +
Sbjct: 467 --DLRVLSGSISERI-VDCIIRLPVKWETTTQ-FKATHILDFGPGGAS-GLGVLTHRNKD 521
Query: 483 GAIIQMISHALISSAMFISIGF 504
G +++I + GF
Sbjct: 522 GTGVRVIVAGTLDINPDDDYGF 543
Score = 48.1 bits (114), Expect = 2e-05
Identities = 87/588 (14%), Positives = 159/588 (27%), Gaps = 250/588 (42%)
Query: 372 IAFAIKIP--IWPMHTWLPD---AHVEAPTEG--------SVI-LAAIML---------- 407
+ + +P + + + L + + PTEG + L L
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 408 KLGCYG-LLRFSLPIFPDASYYFSNLI--ITLSLISIIYISLIAMVQIDIKKLIAYSSIA 464
K+G + +L L F + Y N I + L+ +L+ ++ IK Y +
Sbjct: 76 KVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQENDTTLVKTKEL-IK---NYIT-- 128
Query: 465 HMGFVTLGIFMLTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGG----- 519
+I + + + AL + + +L++ FGG
Sbjct: 129 ------------ARIMAKRPFDKKSNSALFRAV---------GEGNAQLVAIFGGQGNTD 167
Query: 520 -------------------IINVI---------------PHFSVFFIIFS---------- 535
+I F+ I
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 536 ---LANC--SLPG--------------TSGFI-GEFMIILSAVKFNFCI-GVLTSTALIF 574
L + S P GF GE L G++ TA+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--TGHSQGLV--TAVAI 283
Query: 575 SAAYS----LCLSKNIIFVLGQMIMISGNNLLSIYLGLE------LMSLTLCVLIASQKN 624
+ S + I VL ++G+ SL +L S +N
Sbjct: 284 AETDSWESFFVSVRKAITVL-------------FFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 625 NIFSSEAAIKYFILGILSSGFMLYGISILYGITGTLELQSIFNVIKLNN----------- 673
N G+ S ML I+ L + + + + N
Sbjct: 331 NE------------GVPSP--ML-------SISN-LTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 674 --IN---CSVLA--------LSLLL--------------------IIVGLSFKLGIS-PF 699
+N V++ L+L L + F L ++ PF
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASPF 427
Query: 700 H--------------MWVPDV-YQGASIIITLLLSTTPK-L-SLFVIIYRLLIKCLLPLV 742
H + +V + I I + + L L I ++ C++ L
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 743 INWQKILLILAIFSLII----GNVSAI---TQYNFK----RMIAYSSI 779
+ W+ A + I+ G S + T N R+I ++
Sbjct: 488 VKWETTTQFKA--THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 43.1 bits (101), Expect = 6e-04
Identities = 39/232 (16%), Positives = 74/232 (31%), Gaps = 93/232 (40%)
Query: 476 LTKISIQGAIIQMISHALISSAMFISIGFLYNQMKTRLISNFGGIINVIPHFSVFFIIFS 535
T+ + Q A+ L+ A F + + G +IP + F
Sbjct: 1728 ATQFT-QPAL------TLMEKAAF------------EDLKSKG----LIPADATF----- 1759
Query: 536 LANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTA--LIFSAAYSLCLSKNIIFVLGQM 593
A G S +GE+ +A L S A + + + +F G
Sbjct: 1760 -A-----GHS--LGEY----AA---------LASLADVMSIESLVEV------VFYRGMT 1792
Query: 594 IMIS---GNNLLSIY----LGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGILS-SGF 645
+ ++ S Y + ++ + + A++Y + + +G+
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFS-------------QEALQYVVERVGKRTGW 1839
Query: 646 MLYGISI--------LYGITGTLE----LQSIFNVIKLNNINCSVLALSLLL 685
++ I Y G L + ++ N IKL I+ L SL L
Sbjct: 1840 LV---EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 39.6 bits (92), Expect = 0.007
Identities = 61/376 (16%), Positives = 110/376 (29%), Gaps = 125/376 (33%)
Query: 199 TSLIGLLSLVGAPFFSGFYSKDKK-----------KIWIDYFNIYYFLGIDGLSLWFI-P 246
T+ L+ F G+ S + + + F Y G D I
Sbjct: 55 TTPAELVGK-----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND------IHA 103
Query: 247 LTAFITLIIILISLDIKKKLAEYMSAFLIL---------SGLIIGAF-CALDGMLFYIFF 296
L A + + K+ + Y++A ++ S L F +G
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGEG------- 152
Query: 297 EATLIPIFIIIGTWG-GSNRSY------------AAIKFFLYTLMGSLLMLIS----MIY 339
A L+ IF G G G+ Y + + +L LI
Sbjct: 153 NAQLVAIF---G--GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 340 LYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPI-WPMHTWLPDAHVEA---- 394
++ + NIL W + ++ +L + IPI P+ + AH
Sbjct: 208 VFT---QGLNILEWLENPSNTPDKDYL---------LSIPISCPLIGVIQLAHYVVTAKL 255
Query: 395 ----PTE-----------GSVILAAIMLKLGCYGLLRFSLPIFPDASYYFSNLIITLSLI 439
P E ++ A+ + +F ++ ++++
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAET------------DSWESFFVSVRKAITVL 303
Query: 440 SII-YISLIAMVQIDIKKLIAYSSIAH-------MGFVTLGIFMLTKISIQGAIIQMISH 491
I A + I S+ + M L I LT+ +Q + + SH
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM----LSISNLTQEQVQDYVNKTNSH 359
Query: 492 ALISSAMFISIGFLYN 507
+ IS L N
Sbjct: 360 LPAGKQVEIS---LVN 372
Score = 33.5 bits (76), Expect = 0.57
Identities = 117/709 (16%), Positives = 202/709 (28%), Gaps = 295/709 (41%)
Query: 489 ISHA------LISSAMFISIGFLYNQMKTRLISNFGGIINV-------------IPHFSV 529
+SH L+ +A F F+ +Q++ + F I+
Sbjct: 11 LSHGSLEHVLLVPTASF----FIASQLQEQ----FNKILPEPTEGFAADDEPTTPAELVG 62
Query: 530 FFIIFSLANCSLPGTSGFIGEFMIILSAVKFNFCIGVLTSTALIFSAAYSLCLSKNIIFV 589
F+ + +++ P +G+F +L+ F L I + A L
Sbjct: 63 KFLGY-VSSLVEPSK---VGQFDQVLNLCLTEFENCYLEGND-IHALAAKLLQEN----- 112
Query: 590 LGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSS---EAAIK-----YFILGIL 641
++ L+ Y+ T ++ + +S A + I G
Sbjct: 113 --DTTLVKTKELIKNYI-------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-- 161
Query: 642 SSGFMLYGISILYGITGTL-ELQSIFN-----VIKLNNINCSVLALSLLLIIVGLS---F 692
G G + Y EL+ ++ V L I S LS L+ + F
Sbjct: 162 --GQ---GNTDDY-----FEELRDLYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVF 209
Query: 693 KLGISPFHMWVPDVYQGASIIITLLLSTTPKLSLFVIIYRLLIKCLLPLVINWQKILLIL 752
G+ W+ + S TP Y L+
Sbjct: 210 TQGL-NILEWLENP------------SNTPDKD-----Y------------------LLS 233
Query: 753 AIFSL-IIGNVSAITQYNFKRMIAYSSIAH-MGL---MLFSIISIKTSHNNLII----FN 803
S +IG + Q + Y A +G L S + T H+ ++
Sbjct: 234 IPISCPLIG----VIQ-----LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 804 SCDSGL-FY-----IITYIFAILGAFGVIILLKNNTCNKTDELDIFIGL--HQRNPWCAL 855
DS F+ IT +F FIG+ ++ P +L
Sbjct: 285 ETDSWESFFVSVRKAITVLF-------------------------FIGVRCYEAYPNTSL 319
Query: 856 ---IMMIF----------MFSLAGFPPTIGFYAKFFIFEKIFET-------QKIWLLLLI 895
I+ M S++ + + + +T +++ +
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQE-------QVQDYVNKTNSHLPAGKQVEI---- 368
Query: 896 IMCSLIGAKGGRIIKDCPGVGSP----GIYI-VEAIKAARKSALIINRGSLELENLRFEE 950
SL+ ++ G P G+ + + KA S L +R + F E
Sbjct: 369 ---SLVNGAKNLVV-----SGPPQSLYGLNLTLRKAKAP--SGLDQSR-------IPFSE 411
Query: 951 KK---YENFV-----FN---INKASEKIIT-----KILFNTY----PSYAF-----LIKK 985
+K F+ F+ + AS+ I + FN P Y L
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 986 SNYLTNFENENI--WII-DPLD--NITNFSHNFPQYCISIALKQKKQITHSVIYDPIRN- 1039
S ++ E I II P+ T F TH + + P
Sbjct: 472 SGSIS----ERIVDCIIRLPVKWETTTQFK-----------------ATHILDFGPGGAS 510
Query: 1040 ---DLFTAIK-GCGAYLNEKRIRVNKRNKINDALIGT-------DFSFK 1077
L K G G +RV + GT D+ FK
Sbjct: 511 GLGVLTHRNKDGTG-------VRV--------IVAGTLDINPDDDYGFK 544
Score = 33.5 bits (76), Expect = 0.59
Identities = 36/240 (15%), Positives = 72/240 (30%), Gaps = 80/240 (33%)
Query: 972 LFNTYPSY--AFLIKKSNYLTNFENENI--------------WIIDP--------LDNIT 1007
L+ TY + + L+ + W+ +P L +I
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 1008 NFSHNFPQYCISIALKQKKQITHSVI------YDPIRNDLFTAIKG---CGAYLNEKRIR 1058
S P I + Q+ H V+ + P +L + +KG L
Sbjct: 236 -IS--CPL----IGV---IQLAHYVVTAKLLGFTP--GELRSYLKGATGHSQGL------ 277
Query: 1059 VNKRNKINDALI---GTDFSFKNNINSEEYAKI-FQIITKCKNLRNIGTSSLNLAYVASG 1114
+ I + SF + + + F I +C +SL + +
Sbjct: 278 ------VTAVAIAETDSWESFFV--SVRKAITVLFFIGVRCY--EAYPNTSLPPSILEDS 327
Query: 1115 KLDGFFEKGLKPWNIAAGSLLIIESGGIISNFKGEKNYLYTGDIVAGNQKIFSQIISLIN 1174
+ +G +L I S ++ + + T + +++ ISL+N
Sbjct: 328 LENN---EG------VPSPMLSI-SN--LTQEQVQDYVNKTNSHLPAGKQVE---ISLVN 372
Score = 33.1 bits (75), Expect = 0.69
Identities = 48/267 (17%), Positives = 84/267 (31%), Gaps = 82/267 (30%)
Query: 919 GIYIVEAIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKASEKIITKILFNTYPS 978
G I++ + + L I+ G + + +R + Y +F K+ T+ +F
Sbjct: 1658 GFSILDIVINNPVN-LTIHFGGEKGKRIR---ENYSAMIFE-TIVDGKLKTEKIFKE--- 1709
Query: 979 YAFLIKKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCI---SIA----LKQKKQIT-- 1029
+ + S T F +E L + T F+ Q + A LK K I
Sbjct: 1710 ---INEHSTSYT-FRSEK----GLL-SATQFT----QPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 1030 -----HSVIYDPIRNDL--FTAIKGCGAYLN-EKRIR-VNKRNKINDALIGTDFSFKNN- 1079
HS L + A+ ++ E + V R + D ++N
Sbjct: 1757 ATFAGHS---------LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 1080 ----INSEEYAKIFQIITKCKNLRNIGTSS--------LNLA---YVASGKLDGFFEKGL 1124
IN A F + +G + N+ YVA+G L + L
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL-----RAL 1862
Query: 1125 KPWNIAAGSLLIIESGGIISNFKGEKN 1151
++L NF +
Sbjct: 1863 D----TVTNVL---------NFIKLQK 1876
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 1e-05
Identities = 89/672 (13%), Positives = 190/672 (28%), Gaps = 269/672 (40%)
Query: 437 SLISIIYISLIAMVQIDIKKLIAYS-SIAHMGFVTLGIFMLTKISIQGAIIQMISHALIS 495
S+++ +YI + D + Y+ S + ++ A++++ +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-----------YLKLRQALLELRPAKNV- 153
Query: 496 SAMFISIGFLYNQM----KTRLIS---NFGGIINVIPHFSVFFIIFSLANCSLPGTSGFI 548
+ + KT + + + F +F++ +L NC+ P
Sbjct: 154 --------LIDG-VLGSGKTWVALDVCLSYKVQCKMD-FKIFWL--NLKNCNSPE----- 196
Query: 549 GEFMIILSA----VKFNFCIGVLTSTA--------------LIFSAAYSLCL-------S 583
+ +L + N+ S+ L+ S Y CL +
Sbjct: 197 -TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 584 KNII--FVLGQMIMISGNNLLSIYLGLELMSLTLC-VLIASQKNNIFS--SEAAIKYFIL 638
F L C +L+ ++ + S A + L
Sbjct: 256 AKAWNAFNLS------------------------CKILLTTRFKQVTDFLSAATTTHISL 291
Query: 639 GILSSGFMLYGISILYGITGTLELQSIFNVIKLNNINCSVLALS--------LLLIIVGL 690
S E++S+ L ++C L L I+
Sbjct: 292 DHHSMTL------------TPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 691 SFKLGISPFHMWV-PDVYQGASIIITLLLSTTP--------KLSLF---VIIYRLLIKCL 738
S + G++ + W + + +II + L P +LS+F I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-------- 387
Query: 739 LP---LVINWQKIL-----LILAIFSLIIGNVSAITQYNFKRMIAYSSIAHMGLMLFSII 790
P L + W ++ +++ S + + + I+ SI ++ + +
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLH----KYSLVEKQPKESTISIPSI-YL-ELKVKLE 440
Query: 791 SIKTSHNNLI-------IFNSCDSGLFYIITYIFAILGAFGVIILLKNNTCNKTDELDIF 843
+ H +++ F+S D Y+ Y ++
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS------------------------H 476
Query: 844 IGLHQRNPWCALIMMIFMFSLAGFPPTIGFYAKFFIFEKIFETQKIWLLLLIIMCSLIGA 903
IG H +N I + +F +F L +
Sbjct: 477 IGHHLKN--------------------IEHPERMTLFRMVF-------LDF----RFLEQ 505
Query: 904 KGGRIIKDCPGVGSPGIYIVEAIKAARKSALIINRGSLELENLRFEEKKYENFVFNINKA 963
K I D + G + N + K Y+ ++ + +
Sbjct: 506 K---IRHDSTAWNASG----------------------SILNTLQQLKFYKPYICDNDPK 540
Query: 964 SEKIITKILFNTYPSYAFLIKKSNYLTNFENENIWIIDPLDNITNFSHNFPQYCISIALK 1023
E+++ IL ++L E EN+ I ++ + IAL
Sbjct: 541 YERLVNAIL--------------DFLPKIE-ENL-ICSKYTDL-----------LRIALM 573
Query: 1024 QKKQITHSVIYD 1035
+ I++
Sbjct: 574 AE----DEAIFE 581
Score = 38.3 bits (88), Expect = 0.020
Identities = 76/494 (15%), Positives = 135/494 (27%), Gaps = 178/494 (36%)
Query: 25 FW-----YDKPLAITANLKAFLINRIGAMAKSAQFPLHTWLPDSMEGPTPASALIHAATM 79
FW + P + L+ L+ +I P T D IH+
Sbjct: 185 FWLNLKNCNSPETVLEMLQK-LLYQID--------PNWTSRSDHSSNI---KLRIHSIQ- 231
Query: 80 VTAGIFMITRMSPLFELS--NTALSIIL----FIGAITAFFMGLLGIIQNDIK-RIIAYS 132
+ L + L ++L A AF ++ +I+
Sbjct: 232 --------AELRRLLKSKPYENCL-LVLLNVQNAKAWNAF----------NLSCKILL-- 270
Query: 133 TLSQLGYMTVGLGVSAYTVSIFHL---MTHAFFKALLFLSAGSIIINMKHNQDIRNMGGL 189
T + +S+ H +T K+LL ++ + QD+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCR-PQDLP----- 319
Query: 190 YKYMPITCITSLIGLLSLVGAPFFSGFYSKDKKKIWIDYFNIYYFLGIDGLSLWFIPLTA 249
T+ LS++ +D W D + D L+
Sbjct: 320 ----REVLTTNPR-RLSIIAESI------RDGLATW-DNWKHV---NCDKLT-------- 356
Query: 250 FITLIIILISLDIKKKLAEYMSAFLILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGT 309
II SL++ + AEY F LS +F + IP ++
Sbjct: 357 ----TIIESSLNVLEP-AEYRKMFDRLS----------------VFPPSAHIPTILLSLI 395
Query: 310 WGGS-------------NRSYAAI--KFFLYTLMGSLLMLI-----------SMIYLY-- 341
W S K ++ L L S++ Y
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 342 ------------YISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPD 389
Y+ ++ + H +I E++ LF F+ F +L +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR----------FL-E 504
Query: 390 A---HVEAPTEGSVILAAIMLKLGCYGLLRFSLPIFPDASYY---------F-----SNL 432
H S + + +L Y + I + Y F NL
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYK--PY---ICDNDPKYERLVNAILDFLPKIEENL 559
Query: 433 IITLSLISIIYISL 446
I + ++ I+L
Sbjct: 560 ICSKYT-DLLRIAL 572
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.067
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 50 KSAQFPLHTWLPDSMEGPTPASALIHAATM 79
K Q L + DS PA A+ ATM
Sbjct: 23 KKLQASLKLYADDS----APALAI--KATM 46
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron
chelatin ABC transporter, nucleotide binding domain;
2.40A {Haemophilus influenzae}
Length = 337
Score = 34.5 bits (80), Expect = 0.18
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 239 GLSLWFIPLTAFIT-LIIILISLDIKKKLAEYMSAFLILSGLIIGAFC-ALDGMLFYIFF 296
G SL+ + + + + + K + LIL G+I+ AL +L YI
Sbjct: 114 GFSLYGLFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQYISD 173
Query: 297 EATLIP--IFIIIGTWGGSNRSYAAIKFFLYTLMGSLLMLISMIYLYYISNKSFNILS 352
+P +F ++G++ SN + L+ L +S N+LS
Sbjct: 174 TEEKLPSIVFWLMGSFATSNWEKLLF--------FFVPFLLCSSILLSLS-WRLNLLS 222
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
Ser/Thr protein kinase fold, Ser/Thr protein kinase,
TRA; 1.95A {Leishmania major}
Length = 362
Score = 32.7 bits (75), Expect = 0.70
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 584 KNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGIL 641
NI+ + + + +YL ELM L +I Q+ I S I+YF+ IL
Sbjct: 89 PNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVI--SPQHIQYFMYHIL 144
>3qyz_A Mitogen-activated protein kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding CE
phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus
norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A*
4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A
3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A*
2oji_A* ...
Length = 364
Score = 30.7 bits (70), Expect = 2.7
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 584 KNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGIL 641
+NII + + + + +Y+ +LM L L+ +Q S I YF+ IL
Sbjct: 85 ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQH----LSNDHICYFLYQIL 138
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 30.3 bits (69), Expect = 3.5
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 234 FLGIDGLSLWFIPLTAFI-----TLIIILISLDIKKKLAEYMSAFLILSGLIIGAFC-AL 287
LG L W + L+A TLI++ + ++ L+ ++ L+L+G+ +G AL
Sbjct: 106 LLGQGQLPNWALGLSAIAGALIITLILLRFA---RRHLS---TSRLLLAGVALGIISSAL 159
Query: 288 DGMLFYI 294
Y
Sbjct: 160 MTWAIYF 166
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 30.8 bits (70), Expect = 3.8
Identities = 17/193 (8%), Positives = 47/193 (24%), Gaps = 41/193 (21%)
Query: 229 FNIYYFLGIDGLSLWFIPLTAFITLIIIL--------ISLDIKKKL-------AEYMSAF 273
++ FLG+ +++ L + + I + I+ D +
Sbjct: 700 IHLEIFLGL-WIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGM 758
Query: 274 LILSGLIIGAFCALDGMLFYIFFEATLIPIFIIIGTWGGSNRSYAAIKFFLYTLMGSLLM 333
+L G+++ + + N FL + +
Sbjct: 759 SVLLGVVLAVG---TWITVTTMY-------AQGENGGIVQNFGNMDEVLFLQISLTENWL 808
Query: 334 LISMIYLYYISNKSFNILSWHQLSITKIEQIWLFITFFIAFAIKIPIWPMHTWLPDAHVE 393
+ F + + + I L F+ + + W +
Sbjct: 809 I-------------FITRA-NGPFWSSIPSWQLSGAIFLVDILATCF-TIWGWFEHSDTS 853
Query: 394 APTEGSVILAAIM 406
+ + +
Sbjct: 854 IVAVVRIWIFSFG 866
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Length = 495
Score = 29.5 bits (66), Expect = 8.2
Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 27/138 (19%)
Query: 962 KASEKIITKILFNTYPSYAFLIKKSNYLTNFENEN----IWIIDPLDNITNFSHNFPQYC 1017
S+K++ +L+ +S Y F + + IW ++ +N S+ F
Sbjct: 224 TYSDKLLA--------KDNYLMTESEYKAGFNSVDNKEWIWGHAQTNDQSNASYQFHYLD 275
Query: 1018 ISI--ALKQKKQITHSVI--YDP--IRNDLFTAIKGCGAYLNEKRIRVNKRNKINDALIG 1071
+ + + ++ R ++ GA + + +K
Sbjct: 276 TTTKGSYYYSFNVDPYFRDLFEDGDYRKEMLFWATDPGADVESAAYVWMRNSK------- 328
Query: 1072 TDFSFKNNINSEEYAKIF 1089
F F++ N +
Sbjct: 329 --FRFRDIENQLGDIVLM 344
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3;
transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae}
PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Length = 353
Score = 29.1 bits (66), Expect = 9.5
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 584 KNIIFVLGQMIMISGNNLLSIYLGLELMSLTLCVLIASQKNNIFSSEAAIKYFILGIL 641
+NII + S N +Y+ ELM L +I++Q S+ I+YFI L
Sbjct: 69 ENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQM----LSDDHIQYFIYQTL 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.144 0.430
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,744,478
Number of extensions: 1111735
Number of successful extensions: 2521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 91
Length of query: 1178
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1074
Effective length of database: 3,798,009
Effective search space: 4079061666
Effective search space used: 4079061666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.1 bits)