Query psy5226
Match_columns 582
No_of_seqs 270 out of 2195
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:54:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0018 ArgS Arginyl-tRNA synt 100.0 6E-126 1E-130 1029.8 58.9 561 4-582 2-577 (577)
2 PLN02286 arginine-tRNA ligase 100.0 2E-115 3E-120 962.2 54.7 544 9-582 3-576 (576)
3 PRK12451 arginyl-tRNA syntheta 100.0 1E-113 3E-118 946.4 55.1 550 4-582 2-562 (562)
4 TIGR00456 argS arginyl-tRNA sy 100.0 2E-110 4E-115 925.2 58.3 553 6-582 2-566 (566)
5 PRK01611 argS arginyl-tRNA syn 100.0 3E-102 7E-107 851.0 54.0 502 1-582 1-507 (507)
6 KOG4426|consensus 100.0 4E-101 8E-106 768.7 46.2 545 4-582 72-656 (656)
7 KOG1195|consensus 100.0 1.7E-90 3.8E-95 707.9 38.1 525 29-582 25-567 (567)
8 PF00750 tRNA-synt_1d: tRNA sy 100.0 8.2E-70 1.8E-74 568.7 19.6 338 104-449 2-354 (354)
9 cd00671 ArgRS_core catalytic c 100.0 1E-50 2.2E-55 396.2 23.5 211 124-397 1-212 (212)
10 PTZ00399 cysteinyl-tRNA-synthe 100.0 2.4E-37 5.3E-42 343.7 33.1 357 121-582 57-469 (651)
11 PLN02946 cysteine-tRNA ligase 100.0 1.1E-34 2.3E-39 313.6 30.8 354 121-577 77-474 (557)
12 PRK11893 methionyl-tRNA synthe 100.0 3.9E-34 8.4E-39 316.1 31.9 334 123-544 1-429 (511)
13 COG0143 MetG Methionyl-tRNA sy 100.0 8.1E-34 1.7E-38 306.8 32.9 337 122-543 4-463 (558)
14 PRK00260 cysS cysteinyl-tRNA s 100.0 1.5E-32 3.3E-37 297.2 34.1 338 121-576 20-398 (463)
15 TIGR00398 metG methionyl-tRNA 100.0 9.2E-33 2E-37 305.8 32.0 335 126-546 2-459 (530)
16 PLN02224 methionine-tRNA ligas 100.0 4.1E-32 8.8E-37 299.9 30.2 340 119-544 65-496 (616)
17 PRK12267 methionyl-tRNA synthe 100.0 3.7E-32 8.1E-37 306.9 30.1 337 123-545 4-430 (648)
18 PRK00133 metG methionyl-tRNA s 100.0 1.1E-31 2.5E-36 303.3 32.0 333 123-546 2-458 (673)
19 TIGR00435 cysS cysteinyl-tRNA 100.0 2E-30 4.3E-35 280.1 34.4 316 121-537 18-375 (465)
20 COG0215 CysS Cysteinyl-tRNA sy 100.0 3.4E-31 7.4E-36 276.2 27.3 313 121-543 19-378 (464)
21 PRK14536 cysS cysteinyl-tRNA s 100.0 2.4E-30 5.3E-35 277.2 31.4 338 121-538 20-404 (490)
22 PRK14534 cysS cysteinyl-tRNA s 100.0 3.3E-30 7.2E-35 274.7 28.9 330 123-539 20-398 (481)
23 PRK14535 cysS cysteinyl-tRNA s 100.0 1.4E-29 2.9E-34 275.0 32.3 309 121-539 245-613 (699)
24 PRK12268 methionyl-tRNA synthe 100.0 2.3E-29 5.1E-34 280.3 32.5 335 123-545 3-464 (556)
25 PLN02610 probable methionyl-tR 100.0 5.4E-29 1.2E-33 282.9 33.5 338 123-545 17-486 (801)
26 cd07956 Anticodon_Ia_Arg Antic 100.0 2.1E-30 4.6E-35 241.0 16.9 154 427-582 3-156 (156)
27 PRK12418 cysteinyl-tRNA synthe 100.0 1.2E-28 2.6E-33 257.0 27.9 309 120-542 5-364 (384)
28 TIGR03447 mycothiol_MshC cyste 100.0 1.1E-28 2.3E-33 258.4 24.4 303 122-538 34-387 (411)
29 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.5E-28 3.2E-33 244.9 22.0 252 121-454 5-297 (300)
30 KOG2007|consensus 100.0 1.4E-26 3E-31 238.1 27.4 357 120-578 51-454 (586)
31 KOG0436|consensus 99.9 5.4E-26 1.2E-30 228.6 22.6 340 121-545 37-478 (578)
32 cd00674 LysRS_core_class_I cat 99.9 2.6E-26 5.6E-31 237.4 20.4 263 123-451 19-318 (353)
33 cd00814 MetRS_core catalytic c 99.9 4.4E-26 9.5E-31 236.5 21.1 244 124-447 1-319 (319)
34 cd00812 LeuRS_core catalytic c 99.9 1.7E-26 3.8E-31 238.7 13.1 245 124-449 1-314 (314)
35 cd00668 Ile_Leu_Val_MetRS_core 99.9 5.7E-25 1.2E-29 227.7 20.7 257 125-447 2-312 (312)
36 PF09334 tRNA-synt_1g: tRNA sy 99.9 1.9E-24 4.1E-29 229.0 19.6 267 125-471 1-390 (391)
37 cd00672 CysRS_core catalytic c 99.9 1.1E-23 2.5E-28 204.5 20.5 193 121-448 17-213 (213)
38 PF05746 DALR_1: DALR anticodo 99.9 2.3E-24 5E-29 191.3 12.0 118 464-582 1-119 (119)
39 PRK13208 valS valyl-tRNA synth 99.9 1.5E-21 3.2E-26 225.6 35.0 196 343-575 489-690 (800)
40 PRK00750 lysK lysyl-tRNA synth 99.9 2.7E-23 5.8E-28 226.7 18.7 260 125-449 25-321 (510)
41 cd00818 IleRS_core catalytic c 99.9 3.9E-22 8.5E-27 208.1 21.4 262 124-447 2-338 (338)
42 TIGR00422 valS valyl-tRNA synt 99.9 9.4E-21 2E-25 220.5 33.9 170 373-575 510-684 (861)
43 TIGR00467 lysS_arch lysyl-tRNA 99.9 1.1E-22 2.5E-27 220.1 16.0 265 123-452 18-317 (515)
44 PRK05729 valS valyl-tRNA synth 99.9 2.8E-20 6.1E-25 216.5 34.5 167 374-575 506-677 (874)
45 cd00817 ValRS_core catalytic c 99.9 1.5E-21 3.3E-26 207.0 21.5 133 124-296 2-137 (382)
46 COG0525 ValS Valyl-tRNA synthe 99.9 3.3E-19 7.2E-24 198.9 35.9 171 371-575 508-683 (877)
47 smart00836 DALR_1 DALR anticod 99.9 2E-21 4.4E-26 173.2 12.6 119 464-582 1-122 (122)
48 PRK14900 valS valyl-tRNA synth 99.9 1.1E-18 2.4E-23 205.1 35.7 143 373-544 523-669 (1052)
49 cd00802 class_I_aaRS_core cata 99.8 3.2E-20 7E-25 170.1 15.0 143 127-396 1-143 (143)
50 PLN02943 aminoacyl-tRNA ligase 99.8 4.6E-18 1E-22 198.5 33.3 173 374-575 569-755 (958)
51 TIGR00464 gltX_bact glutamyl-t 99.8 7.3E-20 1.6E-24 197.7 16.5 193 249-457 52-312 (470)
52 TIGR00392 ileS isoleucyl-tRNA 99.8 4.5E-18 9.7E-23 198.4 32.0 171 343-543 567-743 (861)
53 PF01921 tRNA-synt_1f: tRNA sy 99.8 2.1E-20 4.5E-25 191.2 10.8 268 122-454 22-328 (360)
54 PRK06039 ileS isoleucyl-tRNA s 99.8 1.8E-17 4E-22 194.4 36.2 178 367-574 572-755 (975)
55 COG1384 LysS Lysyl-tRNA synthe 99.8 1.2E-19 2.6E-24 190.1 12.4 266 123-455 19-324 (521)
56 PTZ00419 valyl-tRNA synthetase 99.8 2.7E-17 6E-22 193.7 32.8 194 374-575 571-789 (995)
57 PRK05743 ileS isoleucyl-tRNA s 99.8 3.6E-17 7.8E-22 190.6 31.8 170 343-543 548-721 (912)
58 PRK01406 gltX glutamyl-tRNA sy 99.8 8.9E-19 1.9E-23 189.4 16.7 191 249-457 55-321 (476)
59 PLN02882 aminoacyl-tRNA ligase 99.8 1.7E-16 3.7E-21 187.5 35.0 181 367-574 594-784 (1159)
60 PLN02381 valyl-tRNA synthetase 99.8 5.2E-16 1.1E-20 182.4 35.9 135 121-294 126-263 (1066)
61 PLN02843 isoleucyl-tRNA synthe 99.8 6.3E-16 1.4E-20 180.7 35.0 168 343-544 567-749 (974)
62 PRK13804 ileS isoleucyl-tRNA s 99.8 1.2E-15 2.6E-20 178.4 34.4 170 343-543 586-759 (961)
63 PF03485 Arg_tRNA_synt_N: Argi 99.7 3.1E-18 6.8E-23 142.3 7.8 85 7-95 1-85 (85)
64 TIGR00395 leuS_arch leucyl-tRN 99.7 3.6E-15 7.8E-20 174.4 36.2 133 373-541 606-740 (938)
65 PRK00390 leuS leucyl-tRNA synt 99.7 3.8E-15 8.3E-20 171.6 34.5 126 373-540 561-687 (805)
66 PRK12558 glutamyl-tRNA synthet 99.7 4E-17 8.8E-22 173.4 15.9 194 247-457 51-310 (445)
67 PTZ00427 isoleucine-tRNA ligas 99.7 8.6E-15 1.9E-19 172.7 35.6 176 373-575 705-890 (1205)
68 PRK14895 gltX glutamyl-tRNA sy 99.7 9.5E-17 2.1E-21 172.3 17.5 192 249-457 55-310 (513)
69 KOG1247|consensus 99.7 1.5E-16 3.3E-21 160.5 14.4 337 120-544 11-473 (567)
70 TIGR00396 leuS_bact leucyl-tRN 99.7 7.4E-15 1.6E-19 169.6 29.0 120 391-539 604-725 (842)
71 COG0495 LeuS Leucyl-tRNA synth 99.6 3.9E-13 8.4E-18 151.2 30.6 130 374-542 565-697 (814)
72 PRK04156 gltX glutamyl-tRNA sy 99.6 7.4E-15 1.6E-19 159.8 15.5 232 122-454 99-400 (567)
73 PRK12410 glutamylglutaminyl-tR 99.6 1.1E-14 2.3E-19 154.2 15.7 190 249-454 50-302 (433)
74 PF00133 tRNA-synt_1: tRNA syn 99.6 2.7E-14 5.8E-19 160.3 19.8 134 121-294 21-158 (601)
75 PLN02627 glutamyl-tRNA synthet 99.6 9.4E-15 2E-19 157.3 15.1 193 249-457 96-364 (535)
76 cd09287 GluRS_non_core catalyt 99.6 1.9E-14 4.1E-19 140.9 12.9 208 129-454 5-228 (240)
77 cd00808 GluRS_core catalytic c 99.6 5.7E-14 1.2E-18 138.1 15.9 117 251-409 54-179 (239)
78 PF00749 tRNA-synt_1c: tRNA sy 99.5 9.8E-14 2.1E-18 143.0 16.5 190 249-452 52-312 (314)
79 cd00418 GlxRS_core catalytic c 99.5 8.3E-14 1.8E-18 135.8 13.2 163 249-454 52-222 (230)
80 TIGR03838 queuosine_YadB gluta 99.5 4.9E-13 1.1E-17 134.0 12.7 140 250-404 52-241 (272)
81 KOG0432|consensus 99.4 8E-11 1.7E-15 129.5 28.4 137 121-296 73-212 (995)
82 COG0008 GlnS Glutamyl- and glu 99.4 1.6E-12 3.4E-17 139.3 14.9 190 250-454 61-320 (472)
83 cd00807 GlnRS_core catalytic c 99.4 2.2E-12 4.8E-17 125.9 12.3 159 249-454 52-226 (238)
84 PRK05710 glutamyl-Q tRNA(Asp) 99.4 5.3E-12 1.2E-16 127.9 14.4 140 250-404 57-248 (299)
85 PLN03233 putative glutamate-tR 99.4 1.1E-11 2.4E-16 133.6 17.1 178 248-454 61-308 (523)
86 TIGR00463 gltX_arch glutamyl-t 99.3 8E-11 1.7E-15 128.4 17.6 230 123-454 92-391 (560)
87 PLN02907 glutamate-tRNA ligase 99.3 6.8E-11 1.5E-15 133.6 17.0 241 123-454 212-510 (722)
88 PRK12300 leuS leucyl-tRNA synt 99.3 1.7E-10 3.6E-15 134.9 20.6 158 343-543 533-696 (897)
89 PTZ00402 glutamyl-tRNA synthet 99.3 1.2E-10 2.6E-15 127.0 17.3 186 249-454 103-350 (601)
90 COG0060 IleS Isoleucyl-tRNA sy 99.2 7.1E-11 1.5E-15 134.3 13.0 198 343-575 558-764 (933)
91 PRK05347 glutaminyl-tRNA synth 99.2 5.8E-10 1.2E-14 120.9 19.1 177 249-454 80-332 (554)
92 PRK14703 glutaminyl-tRNA synth 99.1 2.2E-09 4.8E-14 121.2 19.4 179 249-454 82-335 (771)
93 KOG1149|consensus 99.1 3.1E-09 6.7E-14 109.1 16.5 88 309-409 211-298 (524)
94 PLN02859 glutamine-tRNA ligase 99.1 2.9E-09 6.2E-14 119.1 16.9 103 345-476 461-580 (788)
95 PLN02563 aminoacyl-tRNA ligase 99.1 1E-09 2.2E-14 127.8 13.8 117 391-538 723-842 (963)
96 TIGR00440 glnS glutaminyl-tRNA 99.0 9.8E-09 2.1E-13 111.2 15.2 44 249-294 51-95 (522)
97 PTZ00437 glutaminyl-tRNA synth 98.9 7.7E-08 1.7E-12 104.4 17.2 44 249-294 102-145 (574)
98 KOG0435|consensus 98.8 1.3E-08 2.8E-13 109.5 9.7 115 121-294 56-175 (876)
99 PLN02959 aminoacyl-tRNA ligase 98.7 3.7E-07 8E-12 108.6 19.7 144 343-528 674-825 (1084)
100 PLN02959 aminoacyl-tRNA ligase 98.7 9.9E-08 2.1E-12 113.4 12.3 60 123-182 45-104 (1084)
101 PLN02563 aminoacyl-tRNA ligase 98.6 2.9E-07 6.2E-12 107.7 14.1 57 122-179 110-167 (963)
102 KOG0433|consensus 98.5 7E-07 1.5E-11 97.3 11.2 174 344-542 570-746 (937)
103 KOG0434|consensus 98.3 0.00021 4.6E-09 77.8 24.7 145 373-548 586-744 (1070)
104 PRK12300 leuS leucyl-tRNA synt 98.2 2.5E-06 5.4E-11 100.2 8.3 125 138-294 1-128 (897)
105 COG0060 IleS Isoleucyl-tRNA sy 97.7 0.0001 2.2E-09 85.0 7.9 131 125-294 51-183 (933)
106 PRK05912 tyrosyl-tRNA syntheta 97.4 0.00068 1.5E-08 72.7 10.0 59 339-404 187-245 (408)
107 PRK13354 tyrosyl-tRNA syntheta 97.4 0.00083 1.8E-08 72.0 10.3 59 340-405 186-244 (410)
108 PLN02486 aminoacyl-tRNA ligase 97.3 0.031 6.6E-07 59.3 20.2 57 343-404 222-279 (383)
109 TIGR00233 trpS tryptophanyl-tR 97.2 0.045 9.8E-07 57.1 20.8 55 345-405 144-207 (328)
110 PRK08560 tyrosyl-tRNA syntheta 97.2 0.00094 2E-08 69.7 8.3 61 344-409 172-233 (329)
111 cd07375 Anticodon_Ia_like Anti 97.1 0.0067 1.4E-07 52.5 10.9 77 464-544 10-86 (117)
112 cd00805 TyrRS_core catalytic c 97.1 0.00084 1.8E-08 68.1 5.8 53 342-401 153-205 (269)
113 PRK01233 glyS glycyl-tRNA synt 97.0 0.0077 1.7E-07 68.3 12.8 108 461-571 568-675 (682)
114 KOG1147|consensus 96.9 0.001 2.2E-08 70.8 4.5 46 247-294 249-294 (712)
115 TIGR00211 glyS glycyl-tRNA syn 96.8 0.011 2.3E-07 67.2 12.6 108 461-571 578-685 (691)
116 PTZ00126 tyrosyl-tRNA syntheta 96.8 0.0058 1.3E-07 64.9 9.2 56 345-404 215-271 (383)
117 KOG0435|consensus 96.7 0.023 5.1E-07 62.4 12.8 123 391-544 617-747 (876)
118 cd00395 Tyr_Trp_RS_core cataly 96.6 0.0082 1.8E-07 61.0 9.0 59 342-407 155-214 (273)
119 PRK12285 tryptophanyl-tRNA syn 96.6 0.023 5E-07 60.0 12.4 65 340-409 203-270 (368)
120 PRK12284 tryptophanyl-tRNA syn 96.6 0.0054 1.2E-07 65.3 7.3 55 345-404 153-215 (431)
121 TIGR00234 tyrS tyrosyl-tRNA sy 96.3 0.017 3.7E-07 61.4 9.0 55 343-404 180-234 (377)
122 COG0751 GlyS Glycyl-tRNA synth 96.2 0.04 8.8E-07 61.6 11.9 107 461-570 577-683 (691)
123 PRK14908 glycyl-tRNA synthetas 96.2 0.04 8.7E-07 64.5 12.3 103 461-571 893-995 (1000)
124 PTZ00348 tyrosyl-tRNA syntheta 96.0 0.015 3.2E-07 65.9 7.5 57 345-405 180-237 (682)
125 KOG0433|consensus 95.8 0.072 1.6E-06 59.3 11.3 43 134-176 66-108 (937)
126 cd07957 Anticodon_Ia_Met Antic 95.8 0.12 2.6E-06 45.6 11.0 102 467-575 12-115 (129)
127 COG0162 TyrS Tyrosyl-tRNA synt 95.5 0.083 1.8E-06 56.2 10.0 52 343-401 183-234 (401)
128 KOG0437|consensus 95.4 0.13 2.8E-06 57.4 11.1 61 121-181 42-102 (1080)
129 KOG0437|consensus 94.4 0.11 2.3E-06 58.1 7.3 55 374-450 697-752 (1080)
130 cd07958 Anticodon_Ia_Leu_BEm A 93.8 0.82 1.8E-05 39.4 10.8 73 467-543 12-84 (117)
131 PLN02886 aminoacyl-tRNA ligase 92.9 0.87 1.9E-05 48.4 10.9 38 129-172 50-87 (389)
132 cd00806 TrpRS_core catalytic c 91.8 0.13 2.9E-06 52.4 3.2 56 344-404 141-205 (280)
133 COG0180 TrpS Tryptophanyl-tRNA 90.9 0.13 2.7E-06 52.9 1.9 59 345-409 150-217 (314)
134 PF00579 tRNA-synt_1b: tRNA sy 90.6 0.11 2.3E-06 53.4 1.1 61 343-409 152-217 (292)
135 cd07959 Anticodon_Ia_Leu_AEc A 90.5 4 8.6E-05 35.1 10.9 90 468-575 13-103 (117)
136 PRK12556 tryptophanyl-tRNA syn 87.3 0.44 9.6E-06 49.8 2.9 54 345-404 154-215 (332)
137 cd07962 Anticodon_Ia_Val Antic 83.5 8.9 0.00019 34.2 9.2 49 497-545 42-92 (135)
138 PRK12282 tryptophanyl-tRNA syn 80.5 1 2.2E-05 47.2 2.1 61 344-408 146-213 (333)
139 PRK00927 tryptophanyl-tRNA syn 80.4 1.1 2.3E-05 47.0 2.3 58 343-405 141-210 (333)
140 PF08264 Anticodon_1: Anticodo 80.4 7.2 0.00016 35.3 7.6 73 500-575 2-78 (153)
141 PF00579 tRNA-synt_1b: tRNA sy 74.8 2.2 4.7E-05 43.8 2.6 45 122-173 3-47 (292)
142 KOG1148|consensus 73.0 5.4 0.00012 44.0 5.0 59 122-181 246-332 (764)
143 cd07960 Anticodon_Ia_Ile_BEm A 67.7 38 0.00082 31.7 9.2 79 496-575 43-125 (180)
144 PF09190 DALR_2: DALR domain; 64.9 16 0.00034 28.0 4.9 52 514-577 3-55 (63)
145 PRK12283 tryptophanyl-tRNA syn 57.5 6.1 0.00013 42.1 1.9 38 129-173 6-44 (398)
146 cd00806 TrpRS_core catalytic c 51.9 11 0.00023 38.5 2.6 39 129-172 3-41 (280)
147 cd07961 Anticodon_Ia_Ile_ABEc 45.3 1.1E+02 0.0023 28.7 8.1 78 496-575 46-126 (183)
148 PF08373 RAP: RAP domain; Int 43.5 16 0.00034 27.3 1.7 20 149-168 18-39 (58)
149 PRK12282 tryptophanyl-tRNA syn 43.2 27 0.00058 36.6 3.9 40 129-174 6-45 (333)
150 PRK00927 tryptophanyl-tRNA syn 42.3 21 0.00046 37.3 3.1 41 129-175 5-45 (333)
151 PRK12556 tryptophanyl-tRNA syn 40.1 27 0.00059 36.5 3.4 41 129-173 7-47 (332)
152 smart00840 DALR_2 This DALR do 38.4 97 0.0021 22.6 5.4 48 518-576 8-55 (56)
153 cd07963 Anticodon_Ia_Cys Antic 33.7 1.3E+02 0.0029 27.4 6.6 56 508-576 33-89 (156)
154 cd00923 Cyt_c_Oxidase_Va Cytoc 33.0 34 0.00074 28.9 2.2 24 559-582 78-101 (103)
155 COG1656 Uncharacterized conser 31.0 33 0.00072 31.8 2.0 22 151-172 17-38 (165)
156 PF02284 COX5A: Cytochrome c o 30.8 26 0.00057 29.9 1.2 24 559-582 81-104 (108)
157 COG1832 Predicted CoA-binding 30.7 95 0.0021 28.0 4.7 36 122-168 16-51 (140)
158 PRK09620 hypothetical protein; 29.2 94 0.002 30.7 5.0 46 121-167 2-50 (229)
159 COG0180 TrpS Tryptophanyl-tRNA 28.4 86 0.0019 32.5 4.7 38 129-171 9-46 (314)
160 cd02156 nt_trans nucleotidyl t 26.9 32 0.00069 29.1 1.1 15 130-145 4-18 (105)
161 PF01927 Mut7-C: Mut7-C RNAse 25.7 45 0.00098 30.4 1.9 21 151-171 11-31 (147)
162 KOG2623|consensus 21.5 1.3E+02 0.0029 31.9 4.5 59 339-403 226-285 (467)
163 PF04028 DUF374: Domain of unk 20.7 86 0.0019 25.1 2.4 19 149-167 22-40 (74)
164 PRK02001 hypothetical protein; 20.6 6.3E+02 0.014 23.2 8.3 68 79-167 21-97 (152)
No 1
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-126 Score=1029.81 Aligned_cols=561 Identities=37% Similarity=0.570 Sum_probs=487.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeE
Q psy5226 4 EEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSI 83 (582)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v 83 (582)
+|++.+++.+.++|.++... .....+.|+.|++++|||||||+||.|||.+|++|++||++|++.|..++ .|++|
T Consensus 2 ~i~~~l~~~i~~~l~~~~~~-~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~~~P~eiA~~i~~~l~~~~----~~~~v 76 (577)
T COG0018 2 NIKQLLKEKIAEALSAAGLD-VEEIEILVEPPKDPEHGDFATNIAFQLAKKLGKNPREIAEEIAEKLDTDE----IIEKV 76 (577)
T ss_pred CHHHHHHHHHHHHHHHhhcc-ccccccceecCCCCCcccccchHHHHHhhhcCCCHHHHHHHHHHhccccC----cEeEE
Confidence 46778888888888887611 13356889999999999999999999999999999999999999998877 79999
Q ss_pred EeecCcEEEEEeCchHHHHHHHHHHHc-CCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCe
Q psy5226 84 EIIKPGFINLKISSSIKQKIIKYILSS-GIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYK 162 (582)
Q Consensus 84 ~~~~~GfiN~~l~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~ 162 (582)
+++|||||||++++.++++.+.+++.. ++.||....+++++|+||||||||+|||||||+|||||||+|+|+|+++||+
T Consensus 77 eiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~ 156 (577)
T COG0018 77 EIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYD 156 (577)
T ss_pred EEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCC
Confidence 999999999999999999998888776 6678888888999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccc-hhhhhHH--HhCCCHHHHH
Q psy5226 163 VTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIIS-KDRSINI--IANGKINDLK 239 (582)
Q Consensus 163 V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~--~e~~d~~~~~ 239 (582)
|+|+||+||||+|||++++|+..++.+..+ ...+.++|.|+++.++++.+.+..+ .. ...++.+ .|.+|+.+
T Consensus 157 V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~--~~~~~~~~lg~~y~~i~~~~~~~~~-~~~~~~~~~~~k~e~~d~~~-- 231 (577)
T COG0018 157 VTRENYVNDWGTQIGMLALSYEKRGREALG--LTPEPDGYLGEYYVKIAKDLEEDPG-NDEEEAREEVEKLESGDEEA-- 231 (577)
T ss_pred eeEEeeECcHHHHHHHHHHHHHHhcccccc--CCCCcchHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHhcCChHH--
Confidence 999999999999999999997666554332 1234588999999999988775433 11 2222222 27788654
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEec---cCCCCcceEEEc
Q psy5226 240 AIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTT---DYGDDKDRVVRK 316 (582)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~---~~g~~~~~vl~k 316 (582)
.+|+..++.++.+++++|++|||+||.|++||+.+.++++.++++.|+++|++|+++||+|+++. ++|+++++||+|
T Consensus 232 ~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~K 311 (577)
T COG0018 232 ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQK 311 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEE
Confidence 67777789999999999999999999999999998889999999999999999999999999887 689999999999
Q ss_pred cCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC
Q psy5226 317 SNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS 396 (582)
Q Consensus 317 sDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~ 396 (582)
||||++|+|||||||+||++++||++|||||+||++|+.|++++++++ |+.++.....|.+++ +..+|+++|||||.
T Consensus 312 SDGt~lY~t~DIAy~~~K~~~~~d~~IyV~gadq~~~~~ql~~~l~~~--g~~~~~~~~~h~~~~-l~~~~~g~kmStR~ 388 (577)
T COG0018 312 SDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQLKAVLELL--GYGPDKEVLLHQGVG-LVRGGEGVKMSTRA 388 (577)
T ss_pred cCCCeeeehhHHHHHHHHHhcCCCEEEEEeCCcchhHHHHHHHHHHHh--cCCCccceEEEEEEe-eeECCCCccccccC
Confidence 999999999999999999999999999999999999999999999999 998875355666665 44566666999999
Q ss_pred CCcccHHHHHHHHHhhh-----hcCCChhhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226 397 GSYITIRNLIKWLSKTE-----SKNDSIEFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHA 469 (582)
Q Consensus 397 G~~v~l~dll~~~~~~~-----~~~~~~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~a 469 (582)
|++|+++|+++++.+.. ++ +..+ +++ .+|++|+||++|++++.++++|||+++++ +++||+||+|||||
T Consensus 389 G~~vtl~dllde~~era~~~~~~~-~~~~--~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~ls-fegNt~pYvQYA~A 464 (577)
T COG0018 389 GNVVTLDDLLDEAGERAPEEMEEK-EEKN--EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALS-FEGNTAPYVQYAHA 464 (577)
T ss_pred CceEEHHHHHHHHHHHhhhHhhhh-hhhh--HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHh-ccCCCchhHHHHHH
Confidence 99999999999986531 12 2111 333 47999999999999999999999999999 55699999999999
Q ss_pred HHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCC
Q psy5226 470 RIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKN 549 (582)
Q Consensus 470 R~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~ 549 (582)
|+|||+||+.....+.....+ ..+.++.|++|+..|++||+++++|+++++||.+|.||++||+.||+||+.|||++++
T Consensus 465 Ri~SIlrka~e~~~~~~~~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~ 543 (577)
T COG0018 465 RICSILRKAGEDELDLSTEAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPVLGAE 543 (577)
T ss_pred HHHHHHHhccccccccccccc-hhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCcCCCC
Confidence 999999999876443111122 3466788999999999999999999999999999999999999999999999999865
Q ss_pred hh-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 550 IT-IKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 550 ~~-~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
.+ ++.+||+||.+|++||++||+||||++||||
T Consensus 544 ~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~e~M 577 (577)
T COG0018 544 NEELRAARLALVKATRQVLKNGLDLLGIEAPERM 577 (577)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCC
Confidence 54 8999999999999999999999999999999
No 2
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=1.6e-115 Score=962.19 Aligned_cols=544 Identities=23% Similarity=0.317 Sum_probs=447.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcC------CCHHHHHHHHHHHhhhccccccceee
Q psy5226 9 IIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQ------INSYKLAKIIAKNLIQQKNYIKLIQS 82 (582)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~------~~p~~ia~~l~~~l~~~~~~~~~i~~ 82 (582)
|...+.++|.++++.. ....+.|+.|++++|||||||+||.|||.+| ++|++||++|++.|..++ .|++
T Consensus 3 ~~~~~~~~l~~~~~~~-~~~~~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~----~i~~ 77 (576)
T PLN02286 3 LAKLFEASLRLTVPDE-PSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASE----MIES 77 (576)
T ss_pred HHHHHHHHHHHhcCcc-cccCeEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCcccc----ceee
Confidence 4455566666554321 1124789999999999999999999999999 999999999999997655 7999
Q ss_pred EEeecCcEEEEEeCchHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCe
Q psy5226 83 IEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYK 162 (582)
Q Consensus 83 v~~~~~GfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~ 162 (582)
|+++|||||||+|++.++.+.+..++..+..||.. ..++++|+||||||||+|||||||+|||||||+|+|+|+++||+
T Consensus 78 v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~-~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~ 156 (576)
T PLN02286 78 TSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAP-TLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVE 156 (576)
T ss_pred EEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCC-CCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCc
Confidence 99999999999999999999988888878888743 34568999999999999999999999999999999999999999
Q ss_pred eEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHc------CccchhhhhHHH--hCCC
Q psy5226 163 VTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKK------KIISKDRSINII--ANGK 234 (582)
Q Consensus 163 V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~------~~~~~~~~~~~~--e~~d 234 (582)
|+++|||||||+|||+++++++.+|++. . .+.+.++.++...|.+.. +++....++.+. |.+|
T Consensus 157 V~r~nyinD~G~Qi~~l~~~~~~~~~~~----~-----~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd 227 (576)
T PLN02286 157 VLRRNHVGDWGTQFGMLIEHLFEKFPNW----E-----SVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGD 227 (576)
T ss_pred eEEEEeecchHHHHHHHHHHHHHhcCcc----c-----ccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999875444321 0 122333333333222211 122222323232 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEE
Q psy5226 235 INDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVV 314 (582)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl 314 (582)
++.. .+|+..++.+++.|+++|++|||+||. .+|| +|+ +.+.++++.|+++|+++++||++|+++++++ .+++|
T Consensus 228 ~~~~-~lw~~~~~~~~~~~~~~y~~l~V~fd~-~ges-~y~-~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~--~~~vl 301 (576)
T PLN02286 228 PEYR-AAWAKICEISRREFEKVYQRLRVELEE-KGES-FYN-PYIPGVIEELESKGLVVESDGARVIFVEGFD--IPLIV 301 (576)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhCCeeee-cCch-hhh-hhHHHHHHHHHHCCCEEeeCCceEeeccCCC--CceEE
Confidence 7643 677777788899999999999999998 4677 786 5679999999999999999999999886554 47899
Q ss_pred EccCCccccchhhHHHHHhhhhc-CCceEEEEEecCcchhHHHHHHHHHHHHcCCCCC----CCcEEEEEEEEEeeCCee
Q psy5226 315 RKSNGDFTYFVSDIAYHIFKWER-GFIQAINIQGDDHQGTITRVKAGLQAINIGIPND----YPNYILHKMVTVIKNGKE 389 (582)
Q Consensus 315 ~ksDG~~~Y~~~DiA~~~~r~~~-~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~----~~~~~~~~~v~l~~~G~~ 389 (582)
+||||++||+|+|||||.||+++ ++|++|||||+||++||.|++++++++ |+.++ ++.|+.+|+|. ..+|+
T Consensus 302 ~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~l--G~~~~~~~~~l~h~~~g~V~-~~~g~- 377 (576)
T PLN02286 302 VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRA--GWLPEDTYPRLEHVGFGLVL-GEDGK- 377 (576)
T ss_pred EECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHc--CCCccccCCceEEEeeccEE-CCCCC-
Confidence 99999999999999999999987 799999999999999999999999999 98633 35666666663 24676
Q ss_pred eecccCCCCcccHHHHHHHHHhh-----hhcC--CC--hhhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCC
Q psy5226 390 VKISKRSGSYITIRNLIKWLSKT-----ESKN--DS--IEFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDE 458 (582)
Q Consensus 390 ~KMSkr~G~~v~l~dll~~~~~~-----~~~~--~~--~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~ 458 (582)
|||||+|++|+++||++++... .+++ +. .++.+.+ .+|.+|+||++|++++.++++|||+++++ ++|
T Consensus 378 -kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~-~~g 455 (576)
T PLN02286 378 -RFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLD-LKG 455 (576)
T ss_pred -cccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHh-hcC
Confidence 8999999999999999997652 2332 21 2223333 47999999999999999999999999998 788
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q psy5226 459 NPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHG 538 (582)
Q Consensus 459 n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~ 538 (582)
|++|||||||||+|||+||++..........+. .+.++.|++|++.|++||+++..|+++++||.||+||++||+.||+
T Consensus 456 ~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~-~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~ 534 (576)
T PLN02286 456 NTAVYLLYAHARICSIIRKSGKDIDELKKTGKI-VLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTK 534 (576)
T ss_pred CChHHHHHHHHHHHHHHHhccCccccccccccc-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 999999999999999999986432110001122 3568999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCChhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 539 YYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 539 fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
||++|||++++++ .+||+||.+|++||++||+||||+|||||
T Consensus 535 fY~~~~Vl~~~~~--~aRL~L~~a~~~vL~~gL~LLGI~~~e~M 576 (576)
T PLN02286 535 FYSNCKVNGSEEE--TSRLLLCEATAIVMRKCFHLLGITPLYRL 576 (576)
T ss_pred HHhcCccCCCCch--hHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 9999999975443 78999999999999999999999999999
No 3
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-113 Score=946.42 Aligned_cols=550 Identities=21% Similarity=0.341 Sum_probs=453.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeE
Q psy5226 4 EEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSI 83 (582)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v 83 (582)
++++.|.+.|.+++..+... ....+.|+.|+++++|||||| +|.|||.++++|++||++|++.|.. + .|++|
T Consensus 2 ~~~~~i~~~l~~~l~~~~~~--~~~~~~i~~~~~~~~GD~~~~-~~~lak~~~~~P~~iA~~i~~~l~~-~----~i~~v 73 (562)
T PRK12451 2 DYKTQFAESLSNIFTNELTQ--QQILDLIETPKQDEFGDAAFP-CFSLAKQYKKAPAIIAKEVAEKLSD-P----FFTKV 73 (562)
T ss_pred hHHHHHHHHHHHHHHhhccc--cccceeeecCCCCCCCcccch-HHHHHHHcCCCHHHHHHHHHHhccc-c----cccee
Confidence 35666777777777654221 112367889999999999999 6999999999999999999999954 4 58999
Q ss_pred EeecCcEEEEEeCchHHHHH-HHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCe
Q psy5226 84 EIIKPGFINLKISSSIKQKI-IKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYK 162 (582)
Q Consensus 84 ~~~~~GfiN~~l~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~ 162 (582)
+++|| ||||+|++.++.+. +..++..++.||..+.+++++|+||||||||+|||||||+|||||||+|+|+|+++||+
T Consensus 74 e~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~ 152 (562)
T PRK12451 74 EAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYE 152 (562)
T ss_pred EeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCC
Confidence 99996 99999999999765 66888888899976556689999999999999999999999999999999999999999
Q ss_pred eEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHH--hCCCHHHHHH
Q psy5226 163 VTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINII--ANGKINDLKA 240 (582)
Q Consensus 163 V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~--e~~d~~~~~~ 240 (582)
|+++||+||||+|||++++|+ .+|++..+ ....|..++.+ ++.++++.+. ..++++.+.++.+. |.+|++.. .
T Consensus 153 V~r~nyinD~G~Q~~~l~~~~-~~~~~~~~-~~~~~~~~l~~-~Y~~~~~~~~-~~~~~~~~~~~~~~~le~gd~~~~-~ 227 (562)
T PRK12451 153 VVGINYIGDWGTQFGKLITAY-KKWGNEAV-VKEDPIRELFK-LYVQFHEEVK-DDEELEEEGRAWFKKLEEGDEEAV-E 227 (562)
T ss_pred eEEEeeecCchHHHHHHHHHH-HHhCCccc-cccCchHHHHH-HHHHHHHhhc-cChhHHHHHHHHHHHhhCCCHHHH-H
Confidence 999999999999999999975 55532110 00111222333 3333443332 11222223322222 78887643 5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCc
Q psy5226 241 IRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGD 320 (582)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~ 320 (582)
+|+.+++.+++.|+++|++|||+||.|.+|| +|. +.++++++.|+++|+++++|||+|++++++|+ +++||+||||+
T Consensus 228 ~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es-~~~-~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~-~~~vl~ksDGt 304 (562)
T PRK12451 228 LWNWFRHESLKEFSRIYELLGVEFTNFQGEA-FYN-DLMEDFIGILEEHDLLEESEGALVVNLEEEGM-PPCLIRKSDGA 304 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceeecchH-hhh-hhHHHHHHHHHHCCCEEecCCeEEEEecccCC-CceEEEeCCCc
Confidence 6677778888999999999999999888888 676 55799999999999999999999999998886 68999999999
Q ss_pred cccchhhHHHHHhhhhc-CCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc
Q psy5226 321 FTYFVSDIAYHIFKWER-GFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY 399 (582)
Q Consensus 321 ~~Y~~~DiA~~~~r~~~-~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~ 399 (582)
+||+|+|||||.||+++ ++|++|||||+||++||.+++++++++ |+.++. .+.|+.|+.+..+|+ |||||+|++
T Consensus 305 ~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~l--g~~~~~-~l~h~~~g~V~~~g~--kmStR~G~~ 379 (562)
T PRK12451 305 TIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKL--GYTWVD-GMEHVPFGLILKDGK--KMSTRKGRV 379 (562)
T ss_pred cccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHc--CCCccc-CeEEEeeeeEecCCC--CCcCCCCCe
Confidence 99999999999999986 999999999999999999999999999 987542 455555544444777 999999999
Q ss_pred ccHHHHHHHHHhh-----hhcCCChhhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHH
Q psy5226 400 ITIRNLIKWLSKT-----ESKNDSIEFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIF 472 (582)
Q Consensus 400 v~l~dll~~~~~~-----~~~~~~~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~ 472 (582)
|+++||++++..+ .++++..++.+.+ .+|.+|+||++|++++.++++|||+++++ ++||++|||||||||+|
T Consensus 380 v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~-~~g~t~pYiQYa~AR~~ 458 (562)
T PRK12451 380 VLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLK-FEGETGPYVQYTHARAC 458 (562)
T ss_pred eEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhC-cCCCccHHHHHHHHHHH
Confidence 9999999997652 3455444333332 47999999999999999999999999999 78899999999999999
Q ss_pred HHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCChhh
Q psy5226 473 SLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITI 552 (582)
Q Consensus 473 silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~ 552 (582)
||+||++.. . ...++. ++++.|++|+..+.+||+++..++++++||.+|+|+++||+.||+||+.|+|++ +++.
T Consensus 459 SIlrka~~~-~---~~~~~~-l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl~-~~~~ 532 (562)
T PRK12451 459 SILRKESVE-F---ETCTFA-LKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRILE-ESAE 532 (562)
T ss_pred HHHHhcCCC-c---cccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHH
Confidence 999998632 1 122343 568999999999999999999999999999999999999999999999999995 4467
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 553 KMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 553 ~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
+.+||+||.||++||++||.||||+|||||
T Consensus 533 ~~~RL~L~~a~~~vL~~gL~LLGI~~~erM 562 (562)
T PRK12451 533 KDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 889999999999999999999999999999
No 4
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=2e-110 Score=925.17 Aligned_cols=553 Identities=34% Similarity=0.498 Sum_probs=469.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeEEe
Q psy5226 6 KQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEI 85 (582)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v~~ 85 (582)
++.|++.|.+++.++..+ + .+.+.|+.|++++|||||||+||.+||.++++|++||++|++.|...+ .|++|++
T Consensus 2 ~~~i~~~~~~~l~~~~~~-~-~~~~~i~~~~~~~~GD~~~~~a~~lak~~~~~P~~iA~~i~~~l~~~~----~i~~ve~ 75 (566)
T TIGR00456 2 KTLLKDEISAALLKAGLS-K-ESEILLEETPNPEFGDYASNIAFPLAKVLKKNPRAIAEEIVLKLKTGE----IIEKVEA 75 (566)
T ss_pred hHHHHHHHHHHHHhcccc-c-ccceeeecCCCCCCCccccHHHHHHHHHcCCCHHHHHHHHHHhCCCcC----cEeEEEE
Confidence 456677777777665221 1 124788999999999999999999999999999999999999997655 7999999
Q ss_pred ecCcEEEEEeCchHHHHH-HHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeE
Q psy5226 86 IKPGFINLKISSSIKQKI-IKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVT 164 (582)
Q Consensus 86 ~~~GfiN~~l~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~ 164 (582)
+|| ||||+|++.++.+. +..++..++.||..+.+ +++|+||||||||+||+||||+|++++||+|+|+|+++||+|+
T Consensus 76 ~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~ 153 (566)
T TIGR00456 76 AGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLK-NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153 (566)
T ss_pred eCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCC-CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCee
Confidence 998 99999999777664 77888888899976655 7899999999999999999999999999999999999999999
Q ss_pred EEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHH--hCCCHHHHHHHH
Q psy5226 165 REFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINII--ANGKINDLKAIR 242 (582)
Q Consensus 165 ~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~--e~~d~~~~~~~~ 242 (582)
++|||||||+|||++++|+...+.+..++....|.++|.|. +.++++.+.+. +++..+.++.+. |.+|++. ..+|
T Consensus 154 r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-Y~~~~~~~~~~-~~~~~~~~~~~~~le~~d~~~-~~~w 230 (566)
T TIGR00456 154 REYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGF-YVEINKRLEEN-EELEEEARELFVKLESGDEEA-IKLW 230 (566)
T ss_pred EEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHH-HHHHHHHHhhC-ccHHHHHHHHHHhccCCCHHH-HHHH
Confidence 99999999999999999875433222111224567778885 46777766533 344444444443 6788753 3677
Q ss_pred HHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCC-cceEEEccCCcc
Q psy5226 243 DFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDD-KDRVVRKSNGDF 321 (582)
Q Consensus 243 ~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~-~~~vl~ksDG~~ 321 (582)
+.+++.+++.++++|++|||+||.|++|++.+..++++++++.|+++|+++++ ||+|++++++|++ +++||+||||++
T Consensus 231 ~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ksDGt~ 309 (566)
T TIGR00456 231 KRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTY 309 (566)
T ss_pred HHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEEECCCCc
Confidence 77788899999999999999999999888887788999999999999999977 9999999999887 799999999999
Q ss_pred ccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCccc
Q psy5226 322 TYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYIT 401 (582)
Q Consensus 322 ~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~ 401 (582)
||+|+|||||.||+++++|++|||||+||++||.+++++++++ |++++ ..+.|++|+.+ +|. |||||+||+|+
T Consensus 310 ~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~l--G~~~~-~~l~h~~~~~V--~~~--kmSkr~Gn~V~ 382 (566)
T TIGR00456 310 LYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKL--GFYKK-KELIHLNFGMV--PLG--SMKTRRGNVIS 382 (566)
T ss_pred eechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHc--CCCCC-CceEEEEEEEE--ECC--CCCccCCceee
Confidence 9999999999999999999999999999999999999999999 98655 36788888766 344 89999999999
Q ss_pred HHHHHHHHHhh-----hhcCCChhhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy5226 402 IRNLIKWLSKT-----ESKNDSIEFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSL 474 (582)
Q Consensus 402 l~dll~~~~~~-----~~~~~~~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~si 474 (582)
++|+++++.++ .++++. +.+++ .+|++|+||++|++.+.+|++|||+++++ .++|++||+||+|||+|||
T Consensus 383 ~~dll~~~~~ra~~~i~~~~~~--~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SI 459 (566)
T TIGR00456 383 LDNLLDEASKRAGNVITIKNDL--EEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLS-FEGNTAPYIQYAHARICSI 459 (566)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc--cHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhc-cCCCCchhHHHHHHHHHHH
Confidence 99999998653 233332 11222 36999999999999999999999999999 6999999999999999999
Q ss_pred HHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCC-Chhhh
Q psy5226 475 LNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVK-NITIK 553 (582)
Q Consensus 475 lrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~-~~~~~ 553 (582)
++|++....+ ....++. +.++.|++|+..+.+||+.+..++++++||.+|+|+++||+.||+||++|||+++ +++++
T Consensus 460 lrK~~~~~~~-~~~~~~~-~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~Vl~~~~~~~~ 537 (566)
T TIGR00456 460 LRKADIDGEK-LIADDFS-LLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENENLA 537 (566)
T ss_pred HHhccccccc-ccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCccCCCCCHHHH
Confidence 9999754432 1112333 3378899999999999999999999999999999999999999999999999975 45678
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 554 MARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 554 ~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
.+||+||.|+++||++||.||||+|||||
T Consensus 538 ~~RL~L~~a~~~vl~~gL~lLGI~~~e~M 566 (566)
T TIGR00456 538 AARLALLKATRQTLKNGLQLLGIEPPERM 566 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 99999999999999999999999999999
No 5
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-102 Score=851.00 Aligned_cols=502 Identities=40% Similarity=0.646 Sum_probs=432.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccce
Q psy5226 1 MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLI 80 (582)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i 80 (582)
|++++++.|.+.+.+++..+..+ ....+.|+.|+++++|||+||+||.+||.++++|++||++|++. |
T Consensus 1 ~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~i~~~----------i 68 (507)
T PRK01611 1 MMMDIKELLAEALAAALEAGGLP--ELPAVLIERPKDPEHGDYATNVAMQLAKKLKKNPREIAEEIVEA----------I 68 (507)
T ss_pred ChHHHHHHHHHHHHHHHHhcccc--ccccceeecCCCCCccCeecHHHHHHHHHcCCCHHHHHHHHHhh----------e
Confidence 67788888888888887654321 11135688999999999999999999999999999999999874 5
Q ss_pred eeEEeecCcEEEEEeCchHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcC
Q psy5226 81 QSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQG 160 (582)
Q Consensus 81 ~~v~~~~~GfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G 160 (582)
++|+++|||||||+|++.++.+.+..++..++.||..+.+++++|+||||||||+||+||||+|++++||+|+|+||++|
T Consensus 69 ~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G 148 (507)
T PRK01611 69 EKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAG 148 (507)
T ss_pred eEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcC
Confidence 68999999999999999999998888888788999866678899999999999999999999999999999999999999
Q ss_pred CeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHH
Q psy5226 161 YKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKA 240 (582)
Q Consensus 161 ~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~ 240 (582)
|+|+++||+||||+|+++++.++. ..|+.
T Consensus 149 ~~V~~~~~i~D~G~qi~~~a~~~~---------------------------------------------------~~~~~ 177 (507)
T PRK01611 149 YDVTREYYVNDAGTQIGMLIASLE---------------------------------------------------LLWRK 177 (507)
T ss_pred CcEEEEeeeCCccHHHHHHHHHHH---------------------------------------------------HHHHH
Confidence 999999999999999998865310 12444
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCee-eeCCcEEEEeccCCCCcceEEEccCC
Q psy5226 241 IRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTY-YKDGALWLRTTDYGDDKDRVVRKSNG 319 (582)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~-~~~Ga~~~~~~~~g~~~~~vl~ksDG 319 (582)
++ +.+++.|+++|++|||+||.|.+||+.++.+.++++++.|+++|++| +++|++||+++++|++++++|+||||
T Consensus 178 ~~----~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG 253 (507)
T PRK01611 178 AV----DISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDG 253 (507)
T ss_pred HH----HHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCC
Confidence 44 67788899999999999999999998887789999999999999999 99999999999999888999999999
Q ss_pred ccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCc-EEEEEEEEE-eeCCeeeecccCCC
Q psy5226 320 DFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPN-YILHKMVTV-IKNGKEVKISKRSG 397 (582)
Q Consensus 320 ~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~-~~~~~~v~l-~~~G~~~KMSkr~G 397 (582)
+++|+|+|||||.||+++ +|++|||||+||..||.+++++++++ |+.++.+. +.|..++.+ .++|+ |||||+|
T Consensus 254 ~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~~~~~l--g~~~~~~~~~~h~~~glv~~~~g~--KMSkR~G 328 (507)
T PRK01611 254 TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAALKAL--GYDPDALEVLLHQMVGLVRGGEGV--KMSTRAG 328 (507)
T ss_pred CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHHHHHHHc--CCCcccceEEEEEEEEeeECCCCC--cccCCCC
Confidence 999999999999999998 99999999999999999999999999 98755333 566555533 24555 9999999
Q ss_pred CcccHHHHHHHHHhh-hhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q psy5226 398 SYITIRNLIKWLSKT-ESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLN 476 (582)
Q Consensus 398 ~~v~l~dll~~~~~~-~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silr 476 (582)
|+|+++||++++... .+.-..-+.. ..+|++|+||++|+.++.++++|||+++++ .++++++|+||+|+|++||++
T Consensus 329 n~i~l~dll~~a~g~~~~~~~~~~~a--~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~-~~~~~~~yvqYa~aR~~sil~ 405 (507)
T PRK01611 329 NVVTLDDLLDEAVGRARELIEEKEIA--EAVGIDAVRYFDLSRSRDKDLDFDLDLALS-FEGNNPPYVQYAHARICSILR 405 (507)
T ss_pred ceeEHHHHHHHHHHHHHHHHHhhhhh--hhhccceeEehhhhcCCCCCCccCHHHHHh-hcCCCcHHHHHHHHHHHHHHH
Confidence 999999999994332 1110000111 146999999999999999999999999998 567778899999999999999
Q ss_pred hcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCChh-hhHH
Q psy5226 477 QWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNIT-IKMA 555 (582)
Q Consensus 477 k~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~-~~~~ 555 (582)
|+...+.. ..+ ..+.++.|+.|+..|.+||+++.+++++++||.+|+||++||+.||+||++|+ ++++++ .+.+
T Consensus 406 k~~~~~~~---~~~-~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~-l~~~~~~~~~~ 480 (507)
T PRK01611 406 KAAEAGID---LLL-ALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL-LKDEEEELRNA 480 (507)
T ss_pred hhhccCcc---ccc-cccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC-CCCChHHHHHH
Confidence 97543221 111 12457899999999999999999999999999999999999999999999999 766555 7899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 556 RLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 556 RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
||+||.|+++||++||.||||+|||||
T Consensus 481 Rl~L~~a~~~vl~~~l~lLgi~~~e~M 507 (507)
T PRK01611 481 RLALVKATAQVLKNGLDLLGISAPERM 507 (507)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 999999999999999999999999999
No 6
>KOG4426|consensus
Probab=100.00 E-value=3.7e-101 Score=768.66 Aligned_cols=545 Identities=25% Similarity=0.332 Sum_probs=457.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcC-----CCHHHHHHHHHHHhhhcccccc
Q psy5226 4 EEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQ-----INSYKLAKIIAKNLIQQKNYIK 78 (582)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~-----~~p~~ia~~l~~~l~~~~~~~~ 78 (582)
+++.++.+++..+|+.++++... +++.|.++++++|||||||.||.|++.+| ++|++||++|...++.++
T Consensus 72 ni~~~L~~lF~~aik~a~Pd~~~-vp~liaps~~~kFGDYQCNnAMgl~~~lK~kg~~~~P~~va~~l~~~lP~se---- 146 (656)
T KOG4426|consen 72 NIFRRLQSLFDVAIKLAFPDLPD-VPLLIAPSPNAKFGDYQCNNAMGLSSKLKGKGINKRPRDVAQELQKHLPTSE---- 146 (656)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCC-CCceeccCcccccccccccchhhHHHHHhhcCCccCcHHHHHHHHhhCCchh----
Confidence 57889999999999999986433 56888999999999999999999998886 579999999999999877
Q ss_pred ceeeEEeecCcEEEEEeCchHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHH
Q psy5226 79 LIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFIS 158 (582)
Q Consensus 79 ~i~~v~~~~~GfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~ 158 (582)
.|++++|+||||||++|+.+|+++.+..++.+|-.. +. -..|+|+|||||||++|+|||||+|||||||+|||+|++
T Consensus 147 ~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~~--P~-l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~ 223 (656)
T KOG4426|consen 147 MVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVKL--PT-LSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEF 223 (656)
T ss_pred hhhhhcccCCceEEEEechHHHHHHHHHHHHcCCCC--cc-cceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHh
Confidence 899999999999999999999999999999887662 22 345999999999999999999999999999999999999
Q ss_pred cCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHH--------
Q psy5226 159 QGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINII-------- 230 (582)
Q Consensus 159 ~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~-------- 230 (582)
.|++|.|+||+||||||||||+..++.+|++... ...+|.++.-.|++... ..++.+.|.
T Consensus 224 ~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~----------vsp~IgDLQvFYkeSKk--rFD~deeFKkrAyq~VV 291 (656)
T KOG4426|consen 224 SGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLS----------VSPPIGDLQVFYKESKK--RFDEDEEFKKRAYQAVV 291 (656)
T ss_pred cCcceEeeccccchHHHHHHHHHHHHHhCCchhc----------cCCCchhHHHHHHHHHh--ccCcCHHHHHHHHHHee
Confidence 9999999999999999999999998887654321 11235566555554332 223333332
Q ss_pred --hCCCH---HHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEecc
Q psy5226 231 --ANGKI---NDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTD 305 (582)
Q Consensus 231 --e~~d~---~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~ 305 (582)
|.+|| ..|..+|+. ..++|.+.|++|.|+... .||| +|+ +.+.++++.|..+|++.+++|+-++..+
T Consensus 292 ~LQggdp~~~kAW~~ICdv----Sr~ef~kvY~rLdi~l~e-~GES-FYq-~~m~~vveel~~kglvee~~Gr~i~f~~- 363 (656)
T KOG4426|consen 292 RLQGGDPDIRKAWALICDV----SRKEFQKVYNRLDISLKE-RGES-FYQ-DRMAEVVEELKSKGLVEEDDGRRIMFPE- 363 (656)
T ss_pred ecccCCChHHHHHHHHHHh----hHHHHHHHHHHhcchHhh-cchh-hhh-hHHHHHHHHHhcCCceeecCCceEeccC-
Confidence 77887 457766654 467789999999999865 5799 896 7889999999999999999998766554
Q ss_pred CCCCcceEEEccCCccccchhhHHHHHhhhh-cCCceEEEEEecCcchhHHHHHHHHHHHHcCCC-CCCCcEEEEEEEE-
Q psy5226 306 YGDDKDRVVRKSNGDFTYFVSDIAYHIFKWE-RGFIQAINIQGDDHQGTITRVKAGLQAINIGIP-NDYPNYILHKMVT- 382 (582)
Q Consensus 306 ~g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~-~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~-~~~~~~~~~~~v~- 382 (582)
|-+.|..++||||+++|.|+|+|+.++|+. ...||+|||++..|..||..++++.+.. ||- +....+.|+||+.
T Consensus 364 -g~~IPLtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~--gwld~~~~RV~HvgFGlV 440 (656)
T KOG4426|consen 364 -GCDIPLTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKA--GWLDPTYPRVEHVGFGLV 440 (656)
T ss_pred -CCCcceEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHc--CccCCCccceeeeeeeeE
Confidence 345678899999999999999999999985 4789999999999999999999998888 873 3333667888874
Q ss_pred EeeCCeeeecccCCCCcccHHHHHHHHHhh-----hhcCC----ChhhHhh--hhcchhhHHHHHhccCCCCcccccHHH
Q psy5226 383 VIKNGKEVKISKRSGSYITIRNLIKWLSKT-----ESKND----SIEFRED--LIRGRDLMRFFLISRKSDTDFIFDIDL 451 (582)
Q Consensus 383 l~~~G~~~KMSkr~G~~v~l~dll~~~~~~-----~~~~~----~~~~~~~--~~~~~~airy~~l~~~~~~~~~F~~~~ 451 (582)
|.+||+ |+.||.|.+|.|-|||+++.++ .++.. +.++-.. .+++.++++|.+|+++|.+||.||+|+
T Consensus 441 LGeD~K--kFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDk 518 (656)
T KOG4426|consen 441 LGEDKK--KFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDK 518 (656)
T ss_pred EccCcc--cccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHH
Confidence 457787 8889999999999999999764 33332 2332222 357999999999999999999999999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcc---cccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHH
Q psy5226 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSL---ISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFY 528 (582)
Q Consensus 452 ~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~---~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~y 528 (582)
|++ ..|||+.|+.|||+|+|||.||.+...... +....--.|.++.||+|.++|.+|++.++.+.+++-||.+|+|
T Consensus 519 ML~-DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y 597 (656)
T KOG4426|consen 519 MLE-DRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDY 597 (656)
T ss_pred Hhh-ccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999 889999999999999999999998763221 1111112367899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCh-----hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 529 LRDLAKELHGYYNTERILVKNI-----TIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 529 l~~La~~~n~fy~~~~vl~~~~-----~~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
+|+||..|+.||++|.|++.++ .+..+||+||+||+.||+.|+.+|||.|+.+|
T Consensus 598 ~y~l~t~Ft~FY~~Cyv~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~pV~km 656 (656)
T KOG4426|consen 598 LYELATLFTEFYDSCYVIEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIKPVYKM 656 (656)
T ss_pred HHHHHHHHHHHhhccEEeccccccccccchhHHHHHHHHHHHHHHHhhHhhCCcccccC
Confidence 9999999999999999986432 46789999999999999999999999999998
No 7
>KOG1195|consensus
Probab=100.00 E-value=1.7e-90 Score=707.93 Aligned_cols=525 Identities=24% Similarity=0.318 Sum_probs=437.6
Q ss_pred ceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeEEeecCcEEEEEeCchHHHH-HHHHH
Q psy5226 29 TIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQK-IIKYI 107 (582)
Q Consensus 29 ~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v~~~~~GfiN~~l~~~~~~~-~~~~~ 107 (582)
.+..|.+.+++-||...|++. ++..+.+.|.+.++.++.+. .|+++...|| |++|++++..+.+ ++..+
T Consensus 25 ~~~le~~~~~~r~~~~~~lp~-----i~~~~~~~a~~~~e~~~~~~----~v~~~~~~~~-~~~f~ln~~~~~k~~l~~i 94 (567)
T KOG1195|consen 25 PPALEQSNSMDRPDLLLPLPR-----IRVQGKEDALRWAEALPCNR----IVEEVGASGP-FVQFFLNRRRLIKSVLPII 94 (567)
T ss_pred HHHHHhhccCCCCCccccCcc-----cccCCHHHHHHHHHhccccc----chHHHhcCCC-eEEEEecHHHHHHHHHHHH
Confidence 356677888889999887643 35555699999999998876 7999999997 9999999988875 57778
Q ss_pred HHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHH
Q psy5226 108 LSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARA 187 (582)
Q Consensus 108 ~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~ 187 (582)
..+.+.||....+++|+|+|||||||++||+|+||+||||||.+++|+.+.+||+|+++||+||||+|||+++.| |.+|
T Consensus 95 ~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g-~~~~ 173 (567)
T KOG1195|consen 95 EEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALG-FQLY 173 (567)
T ss_pred HHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhcc-HHhh
Confidence 888899999888999999999999999999999999999999999999999999999999999999999999997 5555
Q ss_pred HhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHH--hCCCHH---HHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy5226 188 KAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINII--ANGKIN---DLKAIRDFSVAYLRREQDIDLKIFGV 262 (582)
Q Consensus 188 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~--e~~d~~---~~~~~~~~~~~~~~~~~~~~~~~lgI 262 (582)
+... +....|..++...|++ +++... +.++..+.+++.|. |.+|.+ .|+.|++.++++ +.++|+||||
T Consensus 174 g~e~-~L~~~pI~hL~dvYVk-~nk~~~-~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~----l~~~Y~Rl~v 246 (567)
T KOG1195|consen 174 GDEE-ELQLNPIKHLFDVYVK-INKDAE-KDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEK----LIKTYNRLNV 246 (567)
T ss_pred Cchh-hhccchHHHHHHHHHH-hhhhhh-hCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHH----HHHHHHHhce
Confidence 4310 0001122233333331 221111 11222233333332 666753 588888777665 5788999999
Q ss_pred cccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCc-ceEEEccCCccccchhhHHHHHhhhhc-CCc
Q psy5226 263 KFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDK-DRVVRKSNGDFTYFVSDIAYHIFKWER-GFI 340 (582)
Q Consensus 263 ~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~-~~vl~ksDG~~~Y~~~DiA~~~~r~~~-~~d 340 (582)
+||.|.+||++++ ..++++++.+.+.|+..+.+|+.+|+++++++.. ..++.||||+++|.|||||++++|++. .||
T Consensus 247 ~FD~y~gESqv~~-e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fd 325 (567)
T KOG1195|consen 247 KFDEYSGESQVSN-EKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFD 325 (567)
T ss_pred eeeeccchHHHHH-HHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcc
Confidence 9999999998886 6789999999999988889999999999876542 346889999999999999999999875 899
Q ss_pred eEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhh----hhcC
Q psy5226 341 QAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKT----ESKN 416 (582)
Q Consensus 341 ~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~----~~~~ 416 (582)
++|||++..|..||.+++.+++++ |++|. ..+.|+.|+.+ + .||||+|+++.++|+++++... ++.+
T Consensus 326 r~iYVvd~~Q~~hf~~lf~ilk~m--g~~~a-~~~qHV~~G~v----~--GmsTRkG~~~fl~dil~e~re~m~e~M~s~ 396 (567)
T KOG1195|consen 326 RLIYVVDSQQKDHFCQLFEILKKM--GFDWA-KKLQHVNFGRV----Q--GMSTRKGKVVFLDDILEEAREQMLEVMASN 396 (567)
T ss_pred eEEEEechHHHHHHHHHHHHHHHh--Cchhh-hhcceeccccc----c--cccccCCceeeHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 99985 47788888754 2 7999999999999999998652 2222
Q ss_pred C----ChhhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCccccccc
Q psy5226 417 D----SIEFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKD 490 (582)
Q Consensus 417 ~----~~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d 490 (582)
. .....+++ .+|.+|+++.++...+.++|.|+|+++.+ ++|+||+||||+|+|+.|++||++.-..+.....|
T Consensus 397 ~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~-~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d 475 (567)
T KOG1195|consen 397 KTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLS-FEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEID 475 (567)
T ss_pred cCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhhe-ecCCchHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 1 22233333 47999999999999999999999999999 88999999999999999999999754433345678
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHH
Q psy5226 491 LSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNG 570 (582)
Q Consensus 491 ~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~ 570 (582)
++.+++|....|++.|.+||++++.++++++|+.++.||+.||++++++|...+|++++.++..+||+|+.|+|+||.||
T Consensus 476 ~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~V~d~~~eia~aRL~Lf~AvRqVL~ng 555 (567)
T KOG1195|consen 476 FSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILWVKDSPMEIALARLLLFSAVRQVLNNG 555 (567)
T ss_pred hhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhheeecCCcHHHHHHHHHHHHHHHHHHHhH
Confidence 88899999888999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHhcCCCCCCCC
Q psy5226 571 LKLIGISAPTKM 582 (582)
Q Consensus 571 L~lLGi~~~e~M 582 (582)
|+||||+|+++|
T Consensus 556 m~lLGitPv~~M 567 (567)
T KOG1195|consen 556 MRLLGITPVDRM 567 (567)
T ss_pred HHHhCCCccccC
Confidence 999999999999
No 8
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=8.2e-70 Score=568.68 Aligned_cols=338 Identities=35% Similarity=0.547 Sum_probs=252.0
Q ss_pred HHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHH
Q psy5226 104 IKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSV 183 (582)
Q Consensus 104 ~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~ 183 (582)
|++++.++++| ....+++++|+||||||||+|||||||+||++|||+|||+|+++||+|+++||+||||+|||++++|+
T Consensus 2 i~~il~~~~~y-~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~ 80 (354)
T PF00750_consen 2 INEILEKGEEY-GSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASY 80 (354)
T ss_dssp HHHHHHHGGGT-T--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHH
T ss_pred HHHHHhcchhc-ccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHH
Confidence 56788889999 55668999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHhhcc--CCCCCCCCCCCcccHHHHHHHHHHHcC-ccchhhhhHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5226 184 QARAKAIFL--GKSTWPDTAYNGEYITDIAKCFLKKKK-IISKDRSINII--ANGKINDLKAIRDFSVAYLRREQDIDLK 258 (582)
Q Consensus 184 ~~~~~~~~~--~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~~~~~~~~~~--e~~d~~~~~~~~~~~~~~~~~~~~~~~~ 258 (582)
...+.+... .++..+.+.|.+.++...++...+..+ .+..++++.+. |.++++ |..+|+ ..+++.++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~-~~~~~~---~~~~~~~k~~l~ 156 (354)
T PF00750_consen 81 KKFGDEELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEE-FRELWQ---KYILEWSKETLQ 156 (354)
T ss_dssp HHHHHHHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTT-HHHHHH---HHHHHHHHHHHH
T ss_pred HhhhhhhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHH-HHHHHH---HHHHHHHHHHHH
Confidence 654443211 111222333444443322221111111 12222222222 677776 344443 335677889999
Q ss_pred hhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhhHHHHHhhh-hc
Q psy5226 259 IFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKW-ER 337 (582)
Q Consensus 259 ~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~-~~ 337 (582)
+|+|.||.|++||+.+..+.+.++++.|+++|+++++||++|++++++|+++++||+||||++||+|||||||+||+ .+
T Consensus 157 ~l~i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~ 236 (354)
T PF00750_consen 157 RLYIRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEY 236 (354)
T ss_dssp HTT---SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCS
T ss_pred HHHHHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhh
Confidence 99999999998887766789999999999999999999999999999999999999999999999999999999999 46
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEE-EeeCCeeeecccCCCCcccHHHHHHHHHhh----
Q psy5226 338 GFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVT-VIKNGKEVKISKRSGSYITIRNLIKWLSKT---- 412 (582)
Q Consensus 338 ~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~-l~~~G~~~KMSkr~G~~v~l~dll~~~~~~---- 412 (582)
++|++|||||++|+.||.+++++++++ |+.+....+.|++|+. +.++|+ +|||||+|++|+++|||+++.+.
T Consensus 237 ~~d~~iyV~~~~q~~hf~~l~~~l~~l--g~~~~~~~~~H~~~g~vl~~~gk-~~mstR~G~~i~l~dllde~~~~a~~~ 313 (354)
T PF00750_consen 237 GFDKIIYVVGADQKGHFKQLFAILEAL--GYDPEAVKLQHVSFGVVLLKDGK-VKMSTRKGNVITLDDLLDEAVERALEI 313 (354)
T ss_dssp S-SEEEEEEEGGGHHHHHHHHHHHHHT--T-HHHHCTEEEEEE-EEEETTBE-ESS-TTTTSSTBHHHHHHHHHHHHHHH
T ss_pred ccccEEEEecCchhhHHHHHHHHHHHh--CCCCCCCEEEEEEEEEEEcCCCC-ccccCCCCCceEHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9854345677776653 357887 78999999999999999998652
Q ss_pred hhcCCC--hhhHhhh--hcchhhHHHHHhccCCCCcccccH
Q psy5226 413 ESKNDS--IEFREDL--IRGRDLMRFFLISRKSDTDFIFDI 449 (582)
Q Consensus 413 ~~~~~~--~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~ 449 (582)
.++++. .++.+.+ .+|++|+||++|+++|.++|+|||
T Consensus 314 ~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 314 MEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 334432 2333333 479999999999999999999998
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=1e-50 Score=396.16 Aligned_cols=211 Identities=44% Similarity=0.682 Sum_probs=187.0
Q ss_pred EEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy5226 124 KILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYN 203 (582)
Q Consensus 124 ~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 203 (582)
+|+||||||||+||+||||+||+++||+|+|+||++||+|+++||+||||+||++++.+.
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 489999999999999999999999999999999999999999999999999999876521
Q ss_pred cccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHH
Q psy5226 204 GEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVT 283 (582)
Q Consensus 204 g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i 283 (582)
..|+.++ +.+.+.|.++|++|||.||.|.+||+. .+.+.+++
T Consensus 61 --------------------------------~~~~~~~----~~~~~~~~~~~~~L~i~~d~~~~es~~--~~~~~~~i 102 (212)
T cd00671 61 --------------------------------EKWRKLV----EESIKADLETYGRLDVRFDVWFGESSY--LGLMGKVV 102 (212)
T ss_pred --------------------------------HHHHHHH----HHHHHHHHHHHHHhCCcCceecchhhh--hhHHHHHH
Confidence 0144444 666788899999999999999999974 57899999
Q ss_pred HHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHH
Q psy5226 284 KLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQA 363 (582)
Q Consensus 284 ~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~ 363 (582)
+.|+++|++|+.+|++|++++++++.++++|+||||+++|.|+|||+++||+++++|++|||+|+||..|+.+++.++++
T Consensus 103 ~~L~~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~ 182 (212)
T cd00671 103 ELLEELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALEL 182 (212)
T ss_pred HHHHHCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-CCCCcEEEEEEEEEeeCCeeeecccCCC
Q psy5226 364 INIGIP-NDYPNYILHKMVTVIKNGKEVKISKRSG 397 (582)
Q Consensus 364 l~~G~~-~~~~~~~~~~~v~l~~~G~~~KMSkr~G 397 (582)
+ |++ ++++.|+.+|+|.+ .+|+ |||||+|
T Consensus 183 l--g~~~~~~~~h~~~~~v~~-~~~~--kmS~R~G 212 (212)
T cd00671 183 L--GYDEAKKLEHLLYGMVNL-PKEG--KMSTRAG 212 (212)
T ss_pred c--CCCCCCCeEEEEEEeEEc-CCCC--CCCCCCC
Confidence 9 987 33344444466654 4466 9999998
No 10
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=2.4e-37 Score=343.72 Aligned_cols=357 Identities=15% Similarity=0.185 Sum_probs=263.0
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHH-HcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFI-SQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPD 199 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~-~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~ 199 (582)
.+.+|-++.|+|++++..||||+|++|..|+|+|+|+ +.||+|..+..++|+|-.|-
T Consensus 57 ~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi---------------------- 114 (651)
T PTZ00399 57 NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKII---------------------- 114 (651)
T ss_pred CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHH----------------------
Confidence 4668999999999999999999999999999999999 99999999999999885331
Q ss_pred CCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCCh
Q psy5226 200 TAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKV 279 (582)
Q Consensus 200 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i 279 (582)
.-| . +.+-+ .+..++ +.+.+.|.++|+.|||.++.+.+-.+-| .+.|
T Consensus 115 ---------~~A---~---------------~~g~~-~~~el~----~~~~~~f~~d~~~Lni~~p~~~~r~teh-i~~i 161 (651)
T PTZ00399 115 ---------KRA---R---------------EEKLS-IFLELA----RKWEKEFFEDMKALNVRPPDVITRVSEY-VPEI 161 (651)
T ss_pred ---------HHH---H---------------HhCCC-cHHHHH----HHHHHHHHHHHHHcCCCCCccccCcCcc-HHHH
Confidence 111 1 11211 012233 6677889999999999986544434333 3668
Q ss_pred HHHHHHHHHcCCeeeeCCcEEEEeccCCCCcce--EEE---c------cCCcc-----ccch---hhHHHHHhhhh----
Q psy5226 280 SLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDR--VVR---K------SNGDF-----TYFV---SDIAYHIFKWE---- 336 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~--vl~---k------sDG~~-----~Y~~---~DiA~~~~r~~---- 336 (582)
.++++.|.++|++|+.+|.+||+++.|.+.... -|. + ..|.. .+.. .| .++||..
T Consensus 162 i~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~D--FaLWk~~kpge 239 (651)
T PTZ00399 162 VDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPND--FALWKASKPGE 239 (651)
T ss_pred HHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCcc--HHhhCCCCCCC
Confidence 999999999999999999999999887421000 010 0 01111 1222 24 3456532
Q ss_pred ------cC---Cce--------------EEEEEe--cCc-----chhHHHHHHHHHHHHcCC-CCCCCcEEEEEEEEEee
Q psy5226 337 ------RG---FIQ--------------AINIQG--DDH-----QGTITRVKAGLQAINIGI-PNDYPNYILHKMVTVIK 385 (582)
Q Consensus 337 ------~~---~d~--------------~i~V~g--~dh-----~~~~~~~~~~l~~l~~G~-~~~~~~~~~~~~v~l~~ 385 (582)
|| ++| .++++| .|+ -+.++|.. .+. |. +++ ..|+|+||+++
T Consensus 240 p~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQse---A~~--~~~~~v-~y~~H~G~L~i-- 311 (651)
T PTZ00399 240 PSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSE---AYF--DKHQWV-NYFLHSGHLHI-- 311 (651)
T ss_pred CCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHH---Hhh--CCCCCC-cEEEEEEEEEe--
Confidence 11 122 245543 342 23454443 344 65 454 38899999877
Q ss_pred CCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHH
Q psy5226 386 NGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQ 465 (582)
Q Consensus 386 ~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylq 465 (582)
+|+ |||||+||+|++.|+|+++ |++++||++|+.+++++++||++.+.+..+ +..+|.+
T Consensus 312 ~G~--KMSKSLGNfItp~dlLeky------------------gaDaLR~~lLs~~~~~dldFS~e~l~~a~~-~~~~l~n 370 (651)
T PTZ00399 312 KGL--KMSKSLKNFITIRQALSKY------------------TARQIRLLFLLHKWDKPMNYSDESMDEAIE-KDKVFFN 370 (651)
T ss_pred ccc--hhhhcCCCcccHHHHHHHc------------------ChHHHHHHHHhcCCCCCCccCHHHHHHHHH-HHHHHHH
Confidence 787 9999999999999999998 999999999999999999999999887443 3345666
Q ss_pred HHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHH-HhhchHHHHHHHHHHHHHHHhhhhccc
Q psy5226 466 YAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSV-KDLCPHYVAFYLRDLAKELHGYYNTER 544 (582)
Q Consensus 466 Ya~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~-~~~~p~~l~~yl~~La~~~n~fy~~~~ 544 (582)
| ++|+++++++..... ...+ .+.+..|+..+..+++.+..|+ ++++++.++.+|++|++.+|.|++..
T Consensus 371 ~-~~rl~s~l~~~~~~~--------~~~~-~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~~~- 439 (651)
T PTZ00399 371 F-FANVKIKLRESELTS--------PQKW-TQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLNSG- 439 (651)
T ss_pred H-HHHHHHHHhhccccc--------cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcc-
Confidence 6 899999987643110 1112 4667789999999999999998 67999999999999999999999621
Q ss_pred ccCCChhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 545 ILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 545 vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
...|+.++.++..+|.++|.+|||.++++|
T Consensus 440 --------~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m 469 (651)
T PTZ00399 440 --------EQPSAPLLRSVAQYVTKILSIFGLVEGSDG 469 (651)
T ss_pred --------ccchHHHHHHHHHHHHHHHhcccCCcchhh
Confidence 345788999999999999999999887765
No 11
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.1e-34 Score=313.62 Aligned_cols=354 Identities=19% Similarity=0.213 Sum_probs=251.9
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+.+|-++.|+|+|++++||||+|+.|..|+|+|+|++.||+|..+..++|+|..|-.
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~---------------------- 134 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIA---------------------- 134 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHH----------------------
Confidence 4567999999999999999999999999999999999999999999999998864411
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc-cccccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDN-YCLESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i 279 (582)
-| .+ ++.++ +.+. +.+.+.|.+++++|||.... +.+.| .+.+.+
T Consensus 135 ---------~A---~~--------------~g~~~---~ela----~~y~~~f~~d~~~LnI~~p~~~prat--ehi~~i 179 (557)
T PLN02946 135 ---------RA---NE--------------LGEDP---ISLS----RRYCEEFLSDMAYLHCLPPSVEPRVS--DHIPQI 179 (557)
T ss_pred ---------HH---HH--------------cCCCH---HHHH----HHHHHHHHHHHHHCCCCCCCeecCcc--hhHHHH
Confidence 11 00 12232 2333 67788899999999998543 33434 234678
Q ss_pred HHHHHHHHHcCCeeeeCCcEEEEeccC---CC-----------------------CcceEEEcc--CCccccchhh----
Q psy5226 280 SLVTKLLIQSGKTYYKDGALWLRTTDY---GD-----------------------DKDRVVRKS--NGDFTYFVSD---- 327 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~Ga~~~~~~~~---g~-----------------------~~~~vl~ks--DG~~~Y~~~D---- 327 (582)
.++++.|.++|++|+.+|.+||++.+| |. ..|.+|+|. .|.+.|.++-
T Consensus 180 i~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GR 259 (557)
T PLN02946 180 IDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGR 259 (557)
T ss_pred HHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCC
Confidence 999999999999999999999988754 21 113567763 4555555431
Q ss_pred HHHHHhhhh---cCCceEEEEEe--cC-----cchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCC
Q psy5226 328 IAYHIFKWE---RGFIQAINIQG--DD-----HQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSG 397 (582)
Q Consensus 328 iA~~~~r~~---~~~d~~i~V~g--~d-----h~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G 397 (582)
-+||+.+.. .-.+..|+|+| .| |.++++|..++ . |..+.+ .|+|+|||++ +|+ |||||+|
T Consensus 260 PGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~--g~~~a~-yW~H~G~v~~--~G~--KMSKSlG 329 (557)
T PLN02946 260 PGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA---C--CDSNIS-YWIHNGFVTV--DSE--KMSKSLG 329 (557)
T ss_pred CcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHH---h--CCCCCc-eeeEeeEEEe--CCC--CcCCcCC
Confidence 346666532 12344566664 45 33567666543 4 665543 8899999986 788 9999999
Q ss_pred CcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHh
Q psy5226 398 SYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQ 477 (582)
Q Consensus 398 ~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk 477 (582)
|+++++|+++++ +++++||++|+.+++++++|+++.+.+. .+...|++|+++|+++++++
T Consensus 330 N~itl~dll~~y------------------~~dalR~~lLs~hyr~~l~fs~e~L~~a--~~~l~~l~~~~~~~~~~l~~ 389 (557)
T PLN02946 330 NFFTIRQVIDLY------------------HPLALRLFLLGTHYRSPINYSDVQLESA--SERIFYIYQTLHDCEESLQQ 389 (557)
T ss_pred CcCCHHHHHHhc------------------CccceeeeeeccCCCCCcEecHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 999999999998 9999999999999999999999997763 24456999999999998875
Q ss_pred cCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHh-hchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHH
Q psy5226 478 WGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKD-LCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMAR 556 (582)
Q Consensus 478 ~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~-~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~R 556 (582)
..... . ... .+ ..+...+..+.+.+.+|+++ ++...++..|+++++..|++.+.. .... ...+
T Consensus 390 ~~~~~-~-----~~~---~~--~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~~--~~~~---~~~~ 453 (557)
T PLN02946 390 HDSTF-E-----KDS---VP--PDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTR--KGKK---QEKR 453 (557)
T ss_pred hcccc-c-----ccc---cc--hhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhc--cccc---ccch
Confidence 32110 0 000 01 11222344566777777764 899999999999999999987542 1000 1112
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q psy5226 557 LALIYSIGQVLNNGLKLIGIS 577 (582)
Q Consensus 557 L~L~~a~~~vL~~~L~lLGi~ 577 (582)
+..+.+....+...+.+|||.
T Consensus 454 ~~~l~~~~~~~~~~~~vLGl~ 474 (557)
T PLN02946 454 LESLAALEKKIRDVLSVLGLM 474 (557)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 233444556677788999984
No 12
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-34 Score=316.07 Aligned_cols=334 Identities=19% Similarity=0.209 Sum_probs=242.5
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
++++|.-+-|+|+|++||||+|+.++.|+++|++|..|++|..+..++|+|..+-.-
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~----------------------- 57 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRK----------------------- 57 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHH-----------------------
Confidence 467888999999999999999999999999999999999999999999999754211
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
+ . + +..+|. .+ ++++.+.|++++++|||.+|.|.++++.++.+.+.++
T Consensus 58 --------a---~-~-------------~g~~~~---~~----~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~ 105 (511)
T PRK11893 58 --------A---E-E-------------AGISPQ---EL----ADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEI 105 (511)
T ss_pred --------H---H-H-------------cCCCHH---HH----HHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHH
Confidence 1 0 0 112232 22 2677888999999999999999888877667889999
Q ss_pred HHHHHHcCCeeeeCCcEEEEecc--CCCC-------------cceEEEccCCc-------------------cccc----
Q psy5226 283 TKLLIQSGKTYYKDGALWLRTTD--YGDD-------------KDRVVRKSNGD-------------------FTYF---- 324 (582)
Q Consensus 283 i~~L~~~g~~~~~~Ga~~~~~~~--~g~~-------------~~~vl~ksDG~-------------------~~Y~---- 324 (582)
++.|.++|++|+.++.+|+.... +..+ +..++.++... ....
T Consensus 106 ~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~ 185 (511)
T PRK11893 106 FQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPAS 185 (511)
T ss_pred HHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHH
Confidence 99999999999977655543221 1000 00001110000 0000
Q ss_pred ------------hhhHHHHHhh-h-hc------CCceEEEEEe-----------------------------------cC
Q psy5226 325 ------------VSDIAYHIFK-W-ER------GFIQAINIQG-----------------------------------DD 349 (582)
Q Consensus 325 ------------~~DiA~~~~r-~-~~------~~d~~i~V~g-----------------------------------~d 349 (582)
.+|.+ ++| - .| ..++++|||. .|
T Consensus 186 ~~~~~~~~l~~~~~D~~--isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D 263 (511)
T PRK11893 186 RRNEVISFVKSGLKDLS--ISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKD 263 (511)
T ss_pred HHHHHHHHHHCCCCCcc--cCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEeccc
Confidence 01111 111 0 01 1234566663 33
Q ss_pred cch-hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcc
Q psy5226 350 HQG-TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRG 428 (582)
Q Consensus 350 h~~-~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~ 428 (582)
+.. |..-..+.+.++ |.+++ ..++++||+.+ +|+ |||||+||+|++.|+++++ |
T Consensus 264 ~~~~h~~~~~a~~~a~--~~~~p-~~~~~~g~v~~--~G~--KMSKS~GN~i~~~dll~~~------------------g 318 (511)
T PRK11893 264 ILRFHAVYWPAFLMAA--GLPLP-KRVFAHGFLTL--DGE--KMSKSLGNVIDPFDLVDEY------------------G 318 (511)
T ss_pred ccccchhHHHHHHHhC--CCCCC-CEEEeeccEEE--CCe--eecccCCcEEcHHHHHHHc------------------C
Confidence 221 111112333444 77666 58899999976 788 9999999999999999998 9
Q ss_pred hhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHh
Q psy5226 429 RDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLS 507 (582)
Q Consensus 429 ~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~ 507 (582)
++++||++++..+ .+|++||++.+.+..+++.+++++|.++|+.+++++......+ ..+ .+ .+.++.|+..+.
T Consensus 319 ~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~---~~~--~~-~~~d~~l~~~l~ 392 (511)
T PRK11893 319 VDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVP---EPG--AL-TEADEALLEAAA 392 (511)
T ss_pred cHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCc--cc-chhhHHHHHHHH
Confidence 9999999999855 8999999999987677778889999999999999876443222 111 12 345667888999
Q ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccc
Q psy5226 508 NYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTER 544 (582)
Q Consensus 508 ~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~ 544 (582)
++++.+.+++++++++.++++++++++.+|.|++.++
T Consensus 393 ~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~ 429 (511)
T PRK11893 393 ALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQA 429 (511)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999998774
No 13
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-34 Score=306.82 Aligned_cols=337 Identities=20% Similarity=0.257 Sum_probs=256.8
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
.++++|.-.-|+|+|++||||++++|.+|+++|++|..|++|..+...|++|+.|-.-+.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~-------------------- 63 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAE-------------------- 63 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHH--------------------
Confidence 478999999999999999999999999999999999999999999999999986632111
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSL 281 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~ 281 (582)
+ +.-+|+ ++ ++++.+.|+++++.|||+||.|.+.++-.|.+.+++
T Consensus 64 ---------------~-------------~g~tP~---el----~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~ 108 (558)
T COG0143 64 ---------------K-------------EGITPQ---EL----VDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQE 108 (558)
T ss_pred ---------------H-------------cCCCHH---HH----HHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHH
Confidence 0 234453 23 377788899999999999999999888878889999
Q ss_pred HHHHHHHcCCeeee--CCcEEEEeccC-------------C------CC-------------cceEEEccCCc------c
Q psy5226 282 VTKLLIQSGKTYYK--DGALWLRTTDY-------------G------DD-------------KDRVVRKSNGD------F 321 (582)
Q Consensus 282 ~i~~L~~~g~~~~~--~Ga~~~~~~~~-------------g------~~-------------~~~vl~ksDG~------~ 321 (582)
++++|.++|++|.. .|.+|..+..| | |. +..+-..+.++ .
T Consensus 109 ~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~ 188 (558)
T COG0143 109 FFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEE 188 (558)
T ss_pred HHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccce
Confidence 99999999999974 46666543322 1 10 00111112111 1
Q ss_pred ccch-------------------------------------hhHHHHHhhhhc------CCceEEEEEecCcchhHHHHH
Q psy5226 322 TYFV-------------------------------------SDIAYHIFKWER------GFIQAINIQGDDHQGTITRVK 358 (582)
Q Consensus 322 ~Y~~-------------------------------------~DiA~~~~r~~~------~~d~~i~V~g~dh~~~~~~~~ 358 (582)
-|+- +|++-.+..++| ..+++||||...-.+|++.+.
T Consensus 189 hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~ 268 (558)
T COG0143 189 HYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALG 268 (558)
T ss_pred eEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhc
Confidence 2221 011111111222 247899999888777776553
Q ss_pred H---------------------------------------HHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc
Q psy5226 359 A---------------------------------------GLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY 399 (582)
Q Consensus 359 ~---------------------------------------~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~ 399 (582)
. +|.+ +|.+.| ..+..+||+++ +|+ |||||+||+
T Consensus 269 ~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~--~~~~lP-~~i~ahg~l~~--~G~--KmSKSrG~~ 341 (558)
T COG0143 269 ELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMA--AGLPLP-TRIFAHGFLTL--EGQ--KMSKSRGNV 341 (558)
T ss_pred chhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHh--CCCCCC-CEEEeeeeEEE--CCc--cccccCCcE
Confidence 2 2222 366555 36777888876 787 999999999
Q ss_pred ccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhc
Q psy5226 400 ITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQW 478 (582)
Q Consensus 400 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~ 478 (582)
|++.++++++ |+|++|||+++..| .+|.+|+|+.+.++.|...++-+++-.+|+.++..|+
T Consensus 342 V~~~~~~~~~------------------~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~ 403 (558)
T COG0143 342 VDPDELLEQY------------------GVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKY 403 (558)
T ss_pred EeHHHHHHHc------------------CchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998 99999999999877 8999999999999988766666777779999999999
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcc
Q psy5226 479 GGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTE 543 (582)
Q Consensus 479 ~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~ 543 (582)
+.+.+| ... ... .+.+.+++..+....+.+..+++.++.+++++-+++|+...|+|+++.
T Consensus 404 ~~g~vp---~~~-~~~-~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 404 FDGVVP---AAG-APD-LEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred cCCcCC---ccc-ccc-chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 988776 111 111 256777888888999999999999999999999999999999999988
No 14
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-32 Score=297.20 Aligned_cols=338 Identities=22% Similarity=0.303 Sum_probs=239.6
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++|.++.|+|+|++++||||+|+.++.|+++|++|..||+|..+..++|+|..+-.-
T Consensus 20 ~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~--------------------- 78 (463)
T PRK00260 20 EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKR--------------------- 78 (463)
T ss_pred CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHH---------------------
Confidence 34678999999999999999999999999999999999999999999999988644211
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-ccccccccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVK-FDNYCLESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~-fD~~~~ES~~~~~~~i 279 (582)
|+ +.+.. |+.++ +.+.+.|.++|++|||. +|.+.+.|+ + .+.+
T Consensus 79 ----------A~------------------~~g~~--~~e~~----~~~~~~f~~~~~~Lgi~~~d~~~r~t~-~-~~~~ 122 (463)
T PRK00260 79 ----------AN------------------EEGES--IKELT----ERYIAAFHEDMDALNVLPPDIEPRATE-H-IPEI 122 (463)
T ss_pred ----------HH------------------HcCCC--HHHHH----HHHHHHHHHHHHHcCCCCCCccccccc-c-HHHH
Confidence 10 11221 33333 66778899999999995 566666664 3 4678
Q ss_pred HHHHHHHHHcCCeeeeCCcEEEEeccC---CC-----------------------CcceEEEcc--CCccccchh----h
Q psy5226 280 SLVTKLLIQSGKTYYKDGALWLRTTDY---GD-----------------------DKDRVVRKS--NGDFTYFVS----D 327 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~Ga~~~~~~~~---g~-----------------------~~~~vl~ks--DG~~~Y~~~----D 327 (582)
.++++.|.++|++|+.+|.+||+++.+ |. ..|.+|+|. .|.+.+.++ =
T Consensus 123 ~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~gr 202 (463)
T PRK00260 123 IELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGR 202 (463)
T ss_pred HHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999987654 31 013466664 354444332 1
Q ss_pred HHHHHhhhh---cCCceEEE--EEecCcch-h-HHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcc
Q psy5226 328 IAYHIFKWE---RGFIQAIN--IQGDDHQG-T-ITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYI 400 (582)
Q Consensus 328 iA~~~~r~~---~~~d~~i~--V~g~dh~~-~-~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v 400 (582)
.+||+.... .-++..++ ..|.|+.. | -..+.++.... |.+++ ..|+|.+|+.+ +|+ |||||+||+|
T Consensus 203 pgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~--g~p~~-~~w~H~g~v~~--~G~--KMSKS~GN~i 275 (463)
T PRK00260 203 PGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAAT--GKPFA-NYWMHNGFVTV--NGE--KMSKSLGNFF 275 (463)
T ss_pred CChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhc--CCCcc-eEEEEccEEcc--CCC--cccCcCCCCC
Confidence 234444311 01223334 55778331 2 22233333445 74444 47899999976 788 9999999999
Q ss_pred cHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCC
Q psy5226 401 TIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGG 480 (582)
Q Consensus 401 ~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~ 480 (582)
++.|+++++ +++++||++++.+++++++|+++.+.+. +..+.|+.+.++....
T Consensus 276 ~~~dll~~~------------------~~d~lR~~ll~~~~~~~~~fs~~~l~~a---------~~~~~rl~~~~~~~~~ 328 (463)
T PRK00260 276 TIRDLLKKY------------------DPEVLRFFLLSAHYRSPLNFSEEALEQA---------KKALERLYNALAETAL 328 (463)
T ss_pred CHHHHHHHc------------------CchHhHHHHHhCCCCCCCccCHHHHHHH---------HHHHHHHHHHHHHhhh
Confidence 999999998 9999999999999999999999986652 2234677776665421
Q ss_pred CCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHH
Q psy5226 481 DKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLAL 559 (582)
Q Consensus 481 ~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L 559 (582)
. +.+..+...+..+.+.+.+|++ +++.+.++..++++++.+|.+.+.. +. ..
T Consensus 329 ~---------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~-----~~-------~~ 381 (463)
T PRK00260 329 G---------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETK-----DK-------EA 381 (463)
T ss_pred c---------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcc-----cH-------HH
Confidence 0 0112244556677888999995 8999999999999999999987552 11 12
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy5226 560 IYSIGQVLNNGLKLIGI 576 (582)
Q Consensus 560 ~~a~~~vL~~~L~lLGi 576 (582)
+......|...+.+|||
T Consensus 382 ~~~~~~~~~~~~~ilG~ 398 (463)
T PRK00260 382 AAALAALLRALADVLGL 398 (463)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 33344566677889998
No 15
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=9.2e-33 Score=305.85 Aligned_cols=335 Identities=19% Similarity=0.239 Sum_probs=239.1
Q ss_pred EEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy5226 126 LIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGE 205 (582)
Q Consensus 126 ~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 205 (582)
+|.-+-|||+|++||||+|+.++.|+++|++|..|++|..+..++|+|..+-.-
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~-------------------------- 55 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELK-------------------------- 55 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHH--------------------------
Confidence 566788999999999999999999999999999999999999999999754211
Q ss_pred cHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHH
Q psy5226 206 YITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKL 285 (582)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~ 285 (582)
+ . + +..+|. +++ +.+.+.|+++|++|||++|.+.++++..+.+.+++++++
T Consensus 56 -----a---~-~-------------~g~~~~---e~~----~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~ 106 (530)
T TIGR00398 56 -----A---E-Q-------------EGLTPK---ELV----DKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQK 106 (530)
T ss_pred -----H---H-H-------------cCCCHH---HHH----HHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHH
Confidence 1 0 0 112332 233 667788999999999999988766654445789999999
Q ss_pred HHHcCCeeeeCCcEEEEec--cC-------------------CCCc----------ceEEE--ccCCccc-------cc-
Q psy5226 286 LIQSGKTYYKDGALWLRTT--DY-------------------GDDK----------DRVVR--KSNGDFT-------YF- 324 (582)
Q Consensus 286 L~~~g~~~~~~Ga~~~~~~--~~-------------------g~~~----------~~vl~--ksDG~~~-------Y~- 324 (582)
|.++|++|+.++.+++... .+ |+.. +.+.- ...|++. |+
T Consensus 107 L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~ 186 (530)
T TIGR00398 107 LKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFF 186 (530)
T ss_pred HHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEE
Confidence 9999999987655443221 11 0000 00000 0011110 00
Q ss_pred -------------------------------------hhhHHHHHhhhhcC------CceEEEEEecCcchhHHH-----
Q psy5226 325 -------------------------------------VSDIAYHIFKWERG------FIQAINIQGDDHQGTITR----- 356 (582)
Q Consensus 325 -------------------------------------~~DiA~~~~r~~~~------~d~~i~V~g~dh~~~~~~----- 356 (582)
.+|+.-.+.+..|| .+++||||...-.+|++.
T Consensus 187 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~ 266 (530)
T TIGR00398 187 RLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILS 266 (530)
T ss_pred EhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhcccc
Confidence 00100000000011 245667765433333221
Q ss_pred ---------------------------------HHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHH
Q psy5226 357 ---------------------------------VKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIR 403 (582)
Q Consensus 357 ---------------------------------~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~ 403 (582)
..+++.++ |++++ ..++.+||+.+ +|+ |||||+||+|+++
T Consensus 267 ~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~--~~~~~-~~~~~~g~v~~--~g~--KmSKS~Gn~i~~~ 339 (530)
T TIGR00398 267 GDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGL--GLPLP-TQVFSHGYLTV--EGG--KMSKSLGNVVDPS 339 (530)
T ss_pred CChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhC--CCCCC-CEEEeeccEEE--CCc--eecccCCceecHH
Confidence 11344555 87666 48889999976 577 9999999999999
Q ss_pred HHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccC-CCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCC
Q psy5226 404 NLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRK-SDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDK 482 (582)
Q Consensus 404 dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~ 482 (582)
|+++++ |.|++||++++.. ..+|.+|+++.+.+..|.+...+++|+++|+.+++.++..+.
T Consensus 340 d~i~~~------------------g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~ 401 (530)
T TIGR00398 340 DLLARF------------------GADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGV 401 (530)
T ss_pred HHHHHc------------------CchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999998 9999999999976 589999999998876666677899999999999998764432
Q ss_pred CcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccccc
Q psy5226 483 KSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERIL 546 (582)
Q Consensus 483 ~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl 546 (582)
.+ ... ...+.++.|+..+.++++.+.+++++++++.+++++++++..+|.|++.++-.
T Consensus 402 ~~---~~~---~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw 459 (530)
T TIGR00398 402 LP---SED---ITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPW 459 (530)
T ss_pred CC---CCc---ccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 22 111 12466788999999999999999999999999999999999999999988643
No 16
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=4.1e-32 Score=299.91 Aligned_cols=340 Identities=16% Similarity=0.175 Sum_probs=246.4
Q ss_pred CCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCC
Q psy5226 119 IGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWP 198 (582)
Q Consensus 119 ~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~ 198 (582)
.+++++++|.-.-|+|+|++||||+|+++++|+++|++|..|++|..+.+++|+|+++..-+.
T Consensus 65 ~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~----------------- 127 (616)
T PLN02224 65 VDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA----------------- 127 (616)
T ss_pred CCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH-----------------
Confidence 356788999888889999999999999999999999999999999999999999987643211
Q ss_pred CCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCC
Q psy5226 199 DTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGK 278 (582)
Q Consensus 199 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~ 278 (582)
+ +..+|. +++ +.+...|++.+++|||+||.+.+.++..+...
T Consensus 128 ------------------~-------------~g~~p~---e~~----~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~ 169 (616)
T PLN02224 128 ------------------A-------------NGRNPP---EHC----DIISQSYRTLWKDLDIAYDKFIRTTDPKHEAI 169 (616)
T ss_pred ------------------H-------------cCCChH---HHH----HHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHH
Confidence 0 112232 122 55567788999999999999988776655678
Q ss_pred hHHHHHHHHHcCCeeee--CCcEEEEeccCCCCcceE---EEccCCccc-------cc----------------------
Q psy5226 279 VSLVTKLLIQSGKTYYK--DGALWLRTTDYGDDKDRV---VRKSNGDFT-------YF---------------------- 324 (582)
Q Consensus 279 i~~~i~~L~~~g~~~~~--~Ga~~~~~~~~g~~~~~v---l~ksDG~~~-------Y~---------------------- 324 (582)
+++++..|.++|++|+. .|.+|..+..|.++.+.+ .-...|++. |+
T Consensus 170 vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~ 249 (616)
T PLN02224 170 VKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQ 249 (616)
T ss_pred HHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccC
Confidence 99999999999999985 466666555554321110 000011110 11
Q ss_pred ---------------hhhHHHHHhhhhcC------CceEEEEEecCcchhHHHH--------------------------
Q psy5226 325 ---------------VSDIAYHIFKWERG------FIQAINIQGDDHQGTITRV-------------------------- 357 (582)
Q Consensus 325 ---------------~~DiA~~~~r~~~~------~d~~i~V~g~dh~~~~~~~-------------------------- 357 (582)
.+|++-.+...+|| .+++||||...-.+|++.+
T Consensus 250 p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGK 329 (616)
T PLN02224 250 PSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGK 329 (616)
T ss_pred CHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEee
Confidence 01111111111221 3578888865555554421
Q ss_pred ----------HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhc
Q psy5226 358 ----------KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIR 427 (582)
Q Consensus 358 ----------~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~ 427 (582)
.+++.++ |+++|. .+..+||+.+ +|+ |||||+||+|++.|+++++
T Consensus 330 Dii~fH~i~wpa~l~~~--g~~~P~-~i~~~g~l~~--eG~--KMSKS~GN~i~p~e~l~~y------------------ 384 (616)
T PLN02224 330 DILRFHAVYWPAMLMSA--GLELPK-MVFGHGFLTK--DGM--KMGKSLGNTLEPFELVQKF------------------ 384 (616)
T ss_pred cccccHHHHHHHHHHHC--CCCCCc-EEEecccEec--CCc--cccccCCccCCHHHHHHHc------------------
Confidence 1223334 887774 7778888755 788 9999999999999999999
Q ss_pred chhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHH
Q psy5226 428 GRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKL 506 (582)
Q Consensus 428 ~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l 506 (582)
|+|++|||+++..+ .+|.+|+|+.+.+..|...+.-+.+.++|+.++..+...+.++ . + ... .+.+..|+..+
T Consensus 385 gaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~---~-~-~~~-~~~d~~l~~~l 458 (616)
T PLN02224 385 GPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLV---E-D-STV-AAEGVPLKDTV 458 (616)
T ss_pred CcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC---C-c-ccc-ccccHHHHHHH
Confidence 99999999999866 7999999999877666555556667778999998887655433 1 1 011 22345688889
Q ss_pred hchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccc
Q psy5226 507 SNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTER 544 (582)
Q Consensus 507 ~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~ 544 (582)
.+..+.+.+++++++.+.+++.+++++...|.|++.++
T Consensus 459 ~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~ 496 (616)
T PLN02224 459 EKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRA 496 (616)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999874
No 17
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-32 Score=306.88 Aligned_cols=337 Identities=18% Similarity=0.206 Sum_probs=247.1
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
++++|.-.-|+|+|++||||+|+++++|+++|++|.+|++|..+..++|+|+.+-.-
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~----------------------- 60 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQA----------------------- 60 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHH-----------------------
Confidence 568898899999999999999999999999999999999999999999999855211
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
|+ + +.-+|+ .+ ++.+.+.|+++|++|||+||.|.++++.++.+.++++
T Consensus 61 --------A~----~-------------~g~~~~---e~----~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~ 108 (648)
T PRK12267 61 --------AE----K-------------AGKTPQ---EY----VDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKI 108 (648)
T ss_pred --------HH----H-------------cCCCHH---HH----HHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHH
Confidence 10 0 112332 22 3778889999999999999999999988777889999
Q ss_pred HHHHHHcCCeeee--CCcEEEEeccCCCC-------------cceEEE--------------------ccCCc---cc--
Q psy5226 283 TKLLIQSGKTYYK--DGALWLRTTDYGDD-------------KDRVVR--------------------KSNGD---FT-- 322 (582)
Q Consensus 283 i~~L~~~g~~~~~--~Ga~~~~~~~~g~~-------------~~~vl~--------------------ksDG~---~~-- 322 (582)
++.|.++|++|.. .|.+|..+..|-.+ .+.+.+ +.+.. +.
T Consensus 109 ~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~ 188 (648)
T PRK12267 109 FEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESR 188 (648)
T ss_pred HHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHH
Confidence 9999999999975 45555443332111 000000 00000 00
Q ss_pred -------cc---hhhHHHHHhhhhcC------CceEEEEEecCcchhHHHH-----------------------------
Q psy5226 323 -------YF---VSDIAYHIFKWERG------FIQAINIQGDDHQGTITRV----------------------------- 357 (582)
Q Consensus 323 -------Y~---~~DiA~~~~r~~~~------~d~~i~V~g~dh~~~~~~~----------------------------- 357 (582)
++ .+|++-.+.++.|| .+++||||...-.+|++.+
T Consensus 189 ~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH 268 (648)
T PRK12267 189 KNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFH 268 (648)
T ss_pred HHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchh
Confidence 00 12222222222232 3578888765433333211
Q ss_pred ----HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHH
Q psy5226 358 ----KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMR 433 (582)
Q Consensus 358 ----~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~air 433 (582)
.+.+.++ |++++. .+..+||+++ +|+ |||||+||+|++.|+++.+ |+|++|
T Consensus 269 ~i~wpa~l~~~--~~~~p~-~v~~hg~l~~--eg~--KMSKS~GN~i~p~d~l~~y------------------gaD~lR 323 (648)
T PRK12267 269 AIYWPIMLMAL--GLPLPK-KVFAHGWWLM--KDG--KMSKSKGNVVDPEELVDRY------------------GLDALR 323 (648)
T ss_pred HHHHHHHHHhC--CCCCCc-EEEecceEEE--CCc--eecccCCcccCHHHHHHHc------------------CCcHHH
Confidence 1334445 887764 7788999876 677 9999999999999999999 999999
Q ss_pred HHHhccC-CCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHH
Q psy5226 434 FFLISRK-SDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEV 512 (582)
Q Consensus 434 y~~l~~~-~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~ 512 (582)
||+++.. ..+|.+|+|+.+.+..|.+.++-+.+..+|+.+++.+...+.+| . ...+ .+.+..++..+.++.+.
T Consensus 324 ~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p---~--~~~~-~~~D~~ll~~l~~~~~~ 397 (648)
T PRK12267 324 YYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIP---A--PGNV-TEFDEELIALAEETLKN 397 (648)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCC---C--CCCC-chhhHHHHHHHHHHHHH
Confidence 9999764 58999999999988777665666777889999998886554443 1 1112 34466789999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc
Q psy5226 513 LVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI 545 (582)
Q Consensus 513 v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v 545 (582)
+.+++++++++.+++.+++++...|.|++.++-
T Consensus 398 v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kp 430 (648)
T PRK12267 398 YEELMEELQFSRALEEVWKLISRANKYIDETAP 430 (648)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998753
No 18
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-31 Score=303.35 Aligned_cols=333 Identities=21% Similarity=0.233 Sum_probs=236.6
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
++++|...-|+|+|++||||+|+++++|+++|++|..|++|..+...+|+|+.+-..
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~----------------------- 58 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLK----------------------- 58 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHH-----------------------
Confidence 468898888899999999999999999999999999999999999999988755321
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
|+ + +..+|. .+ ++++.+.|++++++|||++|.+.+.++-.+...++++
T Consensus 59 --------A~----~-------------~g~~p~---e~----~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~ 106 (673)
T PRK00133 59 --------AE----K-------------EGITPE---EL----IARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEI 106 (673)
T ss_pred --------HH----H-------------cCCCHH---HH----HHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHH
Confidence 11 0 122332 22 2777888999999999999988877644345789999
Q ss_pred HHHHHHcCCeeeeCCcEEEEec--c-------------------CCCCcc--------eEEE----ccCCccc-------
Q psy5226 283 TKLLIQSGKTYYKDGALWLRTT--D-------------------YGDDKD--------RVVR----KSNGDFT------- 322 (582)
Q Consensus 283 i~~L~~~g~~~~~~Ga~~~~~~--~-------------------~g~~~~--------~vl~----ksDG~~~------- 322 (582)
+++|.++|++|+.++.+|+... . .|+..+ .-|+ ...|++.
T Consensus 107 ~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~ 186 (673)
T PRK00133 107 YLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEH 186 (673)
T ss_pred HHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecce
Confidence 9999999999987665554321 1 111000 0000 0001110
Q ss_pred cch-----------------------------------hhHHHHHhhhhc-C------CceEEEEEecCcchhHHHH---
Q psy5226 323 YFV-----------------------------------SDIAYHIFKWER-G------FIQAINIQGDDHQGTITRV--- 357 (582)
Q Consensus 323 Y~~-----------------------------------~DiA~~~~r~~~-~------~d~~i~V~g~dh~~~~~~~--- 357 (582)
|+- +|++-.+ ...| | .+++||||.....+|++..
T Consensus 187 ~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR-~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~ 265 (673)
T PRK00133 187 FFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISR-DAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNL 265 (673)
T ss_pred EEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceee-eCCccceECCCCCCeEEEEcccchhhhhHHHhhh
Confidence 110 0000000 0112 1 2456777755443332211
Q ss_pred -------------------------------------HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcc
Q psy5226 358 -------------------------------------KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYI 400 (582)
Q Consensus 358 -------------------------------------~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v 400 (582)
.+++.+. |+++|. .+..+||+.+ +|+ |||||+||+|
T Consensus 266 ~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~--g~~lP~-~v~~hg~v~~--~G~--KMSKS~GNvV 338 (673)
T PRK00133 266 CDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGA--GYRLPT-NVFAHGFLTV--EGA--KMSKSRGTFI 338 (673)
T ss_pred cccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhC--CCCCCC-EEeeeccEEe--cCC--cccccCCccc
Confidence 1233344 887774 8888999977 787 9999999999
Q ss_pred cHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-C-CcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhc
Q psy5226 401 TIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-D-TDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQW 478 (582)
Q Consensus 401 ~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~-~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~ 478 (582)
++.|+++++ |.|++||++++..+ . +|.+|||+.+....+.+...-+.+...|+.+++++.
T Consensus 339 ~p~dlie~y------------------gaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~ 400 (673)
T PRK00133 339 WARTYLDHL------------------DPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKR 400 (673)
T ss_pred CHHHHHHHc------------------CchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 99999999998876 5 699999999876556554444444456999998876
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccccc
Q psy5226 479 GGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERIL 546 (582)
Q Consensus 479 ~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl 546 (582)
..+..+ . .+.++.|+..+.++++.+.+++++++++.+++++++++..+|.|++.++-+
T Consensus 401 ~~~~~~---------~-~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw 458 (673)
T PRK00133 401 FDGKLP---------D-ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPW 458 (673)
T ss_pred cCCCCC---------C-CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 543322 1 234677999999999999999999999999999999999999999988643
No 19
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=2e-30 Score=280.09 Aligned_cols=316 Identities=19% Similarity=0.238 Sum_probs=217.4
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++|.++.|+|+|++++||||+|++|.+|+++|+||..||+|..+..++|+|..+-.-
T Consensus 18 ~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~--------------------- 76 (465)
T TIGR00435 18 VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKR--------------------- 76 (465)
T ss_pred CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHH---------------------
Confidence 34579999999999999999999999999999999999999999999999998744110
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccc-cccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYC-LESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~-~ES~~~~~~~i 279 (582)
| .+ +.-+| +.++ +.+.+.|.++|++|||.+|.+. ++| .+ .+.+
T Consensus 77 ----------A---~~--------------~g~~~---~e~a----~~~~~~f~~dl~~LgI~~d~~~~raT-~h-i~~i 120 (465)
T TIGR00435 77 ----------A---RE--------------NGESV---YEVS----ERFIEAYFEDMKALNVLPPDLEPRAT-EH-IDEI 120 (465)
T ss_pred ----------H---HH--------------cCCCH---HHHH----HHHHHHHHHHHHHhCCCCCcCCcccc-cc-HHHH
Confidence 1 00 12233 2233 7778889999999999999864 555 33 4778
Q ss_pred HHHHHHHHHcCCeeeeC-CcEEEEeccC---CC-----------------------CcceEEEcc--CCccccchh----
Q psy5226 280 SLVTKLLIQSGKTYYKD-GALWLRTTDY---GD-----------------------DKDRVVRKS--NGDFTYFVS---- 326 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~-Ga~~~~~~~~---g~-----------------------~~~~vl~ks--DG~~~Y~~~---- 326 (582)
.++++.|.++|++|+.+ |++||++..+ |. ..|.+|+|+ .|.+.+.++
T Consensus 121 ~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~g 200 (465)
T TIGR00435 121 IEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKG 200 (465)
T ss_pred HHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCC
Confidence 99999999999999998 9999986543 31 023466663 354444432
Q ss_pred hHHHHHhhhh---c--CCceEEEEEecCcch--hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc
Q psy5226 327 DIAYHIFKWE---R--GFIQAINIQGDDHQG--TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY 399 (582)
Q Consensus 327 DiA~~~~r~~---~--~~d~~i~V~g~dh~~--~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~ 399 (582)
=.+||+.... . |..--|...|.||.. |...+.++.... |.+++ ..|+|++|+.+ +|+ |||||+||+
T Consensus 201 rpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~--g~~~~-~~~~h~g~v~~--~g~--KMSKS~GN~ 273 (465)
T TIGR00435 201 RPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAF--GKQLA-KYWMHNGFLMI--DNE--KMSKSLGNF 273 (465)
T ss_pred CCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhc--CCCCC-cEEEEeeEEEe--cCc--cccccCCCc
Confidence 1223433311 0 212234456777652 233334444445 76555 48899999876 787 999999999
Q ss_pred ccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcC
Q psy5226 400 ITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWG 479 (582)
Q Consensus 400 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~ 479 (582)
|++.|+++++ +++++||++|+.+++++++|+++.+.+.. +....+..++.++...+..
T Consensus 274 i~~~dll~~~------------------~~dalR~~ll~~~~~~~l~fs~~~l~~a~--~~~~rl~~~~~~~~~~~~~-- 331 (465)
T TIGR00435 274 FTVRDVLKNY------------------DPEILRYFLLSVHYRSPLDFSEELLEAAK--NALERLYKALRVLDTTLAY-- 331 (465)
T ss_pred CCHHHHHHHC------------------CHHHHHHHHHhCCCCCCCccCHHHHHHHH--HHHHHHHHHHHHHHhhhcc--
Confidence 9999999998 99999999999999999999999887633 2223344444443222110
Q ss_pred CCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHH
Q psy5226 480 GDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELH 537 (582)
Q Consensus 480 ~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n 537 (582)
.... ..+ . ... ...+.+.+.+|++ +++...++..|+++++..|
T Consensus 332 ~~~~----~~~---~-~~~-------~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 332 SGNQ----SLN---K-FPD-------EKEFEARFVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred cccc----ccc---c-chh-------HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 0000 000 0 011 1234455555655 5888899999999999999
No 20
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-31 Score=276.16 Aligned_cols=313 Identities=22% Similarity=0.329 Sum_probs=222.8
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+.+|-++.|+|+|+...||||+|+.|..|+|.|+|+++||.|..+..+.|..-
T Consensus 19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDD-------------------------- 72 (464)
T COG0215 19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDD-------------------------- 72 (464)
T ss_pred CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccH--------------------------
Confidence 344599999999999999999999999999999999999999999998888432
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-ccccccccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVK-FDNYCLESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~-fD~~~~ES~~~~~~~i 279 (582)
++.++.. +.+-+ |..+. +.+.+.|.++++.|||. .|.+.+-++.. +.|
T Consensus 73 ------------KIi~rA~-----------~~g~~--~~ev~----~~~i~~f~~D~~aL~v~~p~~~PraTe~I--~~i 121 (464)
T COG0215 73 ------------KIINRAR-----------EEGLS--IREVA----ERYIAAFFEDMDALNVLPPDIEPRATEHI--DEI 121 (464)
T ss_pred ------------HHHHHHH-----------HhCCC--HHHHH----HHHHHHHHHHHHHhCCCCCcccCcHhhCH--HHH
Confidence 1111110 22321 33333 78889999999999995 58888877543 568
Q ss_pred HHHHHHHHHcCCeeee-CCcEEEEeccC---CC------------------------CcceEEEcc--CCccccchh---
Q psy5226 280 SLVTKLLIQSGKTYYK-DGALWLRTTDY---GD------------------------DKDRVVRKS--NGDFTYFVS--- 326 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~-~Ga~~~~~~~~---g~------------------------~~~~vl~ks--DG~~~Y~~~--- 326 (582)
.++|++|+++|++|+. +|.+||++.+| |. ..|.+|+|+ -|.+.|-++
T Consensus 122 I~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~ 201 (464)
T COG0215 122 IEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGK 201 (464)
T ss_pred HHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCC
Confidence 8999999999999997 78999987654 21 124578774 466666654
Q ss_pred -hHHHHHhhhh---cCCceEEEEE--ecC----cc-hhHHHHHHHHHHHHcC-CCCCCCcEEEEEEEEEeeCCeeeeccc
Q psy5226 327 -DIAYHIFKWE---RGFIQAINIQ--GDD----HQ-GTITRVKAGLQAINIG-IPNDYPNYILHKMVTVIKNGKEVKISK 394 (582)
Q Consensus 327 -DiA~~~~r~~---~~~d~~i~V~--g~d----h~-~~~~~~~~~l~~l~~G-~~~~~~~~~~~~~v~l~~~G~~~KMSk 394 (582)
--+||+.+.- .-++..|+|+ |.| || +.++|..+ +. | ..+. ..|+|.||+++ +|+ ||||
T Consensus 202 GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea---~~--g~~~~a-~yWmH~G~l~i--~ge--KMSK 271 (464)
T COG0215 202 GRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEA---AT--GVKPFA-KYWMHNGFLNI--DGE--KMSK 271 (464)
T ss_pred CCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHh---hh--CCCcce-eEeEEcceeee--cCc--Cccc
Confidence 1346666532 1133445565 455 33 55666553 44 6 3445 49999999988 788 9999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy5226 395 RSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSL 474 (582)
Q Consensus 395 r~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~si 474 (582)
|.||++++.|+|+++ .++++||++|+.+++++++|+.+.+.+..+ ++.|+...
T Consensus 272 SLGNfiti~d~l~~~------------------~p~~lR~~lls~HYR~pl~fsee~L~~A~~---------~l~rl~~~ 324 (464)
T COG0215 272 SLGNFITVRDLLKKY------------------DPEVLRLFLLSSHYRSPLDFSEELLEEAKK---------ALERLYNA 324 (464)
T ss_pred ccCCeeEHHHHHhhc------------------CHHHHHHHHHHHHhCCccccCHHHHHHHHH---------HHHHHHHH
Confidence 999999999999998 999999999999999999999998876332 13455555
Q ss_pred HHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhhhhcc
Q psy5226 475 LNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGYYNTE 543 (582)
Q Consensus 475 lrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~fy~~~ 543 (582)
++...... .+.. . + ....+...+.+|++ +++...++..|+++++..|...+.+
T Consensus 325 ~~~~~~~~------~~~~-~--~-------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~ 378 (464)
T COG0215 325 LRRLRDLA------GDAE-L--A-------DLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEG 378 (464)
T ss_pred HHHHHhhc------cccc-c--c-------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhcc
Confidence 55432111 0110 0 0 23344454555555 5888888899999999987665544
No 21
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.98 E-value=2.4e-30 Score=277.18 Aligned_cols=338 Identities=17% Similarity=0.167 Sum_probs=220.2
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++|-++.|+|++++++||||+|+.|..|+|+|+|+..||+|..+..|.|.|...+ +.
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~--------------~~------- 78 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTD--------------DA------- 78 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeecccccccc--------------CC-------
Confidence 456799999999999999999999999999999999999999999999999985321 11
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChH
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVS 280 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~ 280 (582)
-.+++.+..-|+ + +..+| ..+. +++.+.|.+++++|||.++.+..-++- +.+.+.
T Consensus 79 De~ddKii~~A~---~--------------~g~~~---~e~a----~~~~~~f~~d~~~Lni~~~~~~~rat~-hi~~ii 133 (490)
T PRK14536 79 DSGEDKMVKSAQ---E--------------HGKSV---LEIA----AHYTAAFFRDTARLNIERPSIVCNATE-HIQDMI 133 (490)
T ss_pred cCCChHHHHHHH---H--------------cCCCH---HHHH----HHHHHHHHHHHHHcCCCCCceecCccc-HHHHHH
Confidence 123444432221 0 22333 2333 777888999999999999655433323 346789
Q ss_pred HHHHHHHHcCCeeeeCCcEEEEeccC---CCC-----------------------cceEEEcc----CC-ccccchhh--
Q psy5226 281 LVTKLLIQSGKTYYKDGALWLRTTDY---GDD-----------------------KDRVVRKS----NG-DFTYFVSD-- 327 (582)
Q Consensus 281 ~~i~~L~~~g~~~~~~Ga~~~~~~~~---g~~-----------------------~~~vl~ks----DG-~~~Y~~~D-- 327 (582)
++++.|.++|++|+.+|.+||+...| |.. .|.+|+|. .| .+.+.++-
T Consensus 134 ~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~ 213 (490)
T PRK14536 134 ALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGR 213 (490)
T ss_pred HHHHHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCC
Confidence 99999999999999999999987654 210 13355442 11 23333220
Q ss_pred --HHHHHhhhh---cCCceEEEE--EecCcc-----hhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccC
Q psy5226 328 --IAYHIFKWE---RGFIQAINI--QGDDHQ-----GTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKR 395 (582)
Q Consensus 328 --iA~~~~r~~---~~~d~~i~V--~g~dh~-----~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr 395 (582)
-+||+.+.. .-.+..|+| .|.|+. +..+|.. .+. |.++++ .|+|.+|+.+ +|+ |||||
T Consensus 214 GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~---a~~--g~~~~~-~w~h~g~l~~--~g~--KMSKS 283 (490)
T PRK14536 214 GYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCE---AAT--GKPWVR-YWLHHEFLLM--NKG--KMSKS 283 (490)
T ss_pred CCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHH---Hhc--CCCcce-EEEEcCEEee--cCc--ccccc
Confidence 134554421 011223445 456633 3344433 334 777664 8999999977 677 99999
Q ss_pred CCCcccHHHHHHH-HHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy5226 396 SGSYITIRNLIKW-LSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSL 474 (582)
Q Consensus 396 ~G~~v~l~dll~~-~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~si 474 (582)
+||+++++|++++ . +++++||++|+.+++++++|+++.+.+..+ ..-.++.++.++...
T Consensus 284 lGN~itl~dll~~g~------------------~~~alR~~lls~~yr~~l~Fs~e~l~~a~~--~~~rl~~~~~~~~~~ 343 (490)
T PRK14536 284 AGQFLTLSSLQEKGF------------------QPLDYRFFLLGGHYRSQLAFSWEALKTAKA--ARRSLVRRVARVVDA 343 (490)
T ss_pred CCCcccHHHHHhcCC------------------CHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 9999999999998 5 889999999999999999999999987443 222344444444321
Q ss_pred HHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHh
Q psy5226 475 LNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHG 538 (582)
Q Consensus 475 lrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~ 538 (582)
+... ..... ....+. ..+.....+...+..+.+.+.+|++ +++...++..|+++++..|.
T Consensus 344 ~~~~-~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 344 ARAT-TGSVR-GTLAEC--AAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred hhcc-ccccc-cccccc--ccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 1110 00000 000000 0000000011123345566777766 57888899999999998885
No 22
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=3.3e-30 Score=274.74 Aligned_cols=330 Identities=18% Similarity=0.191 Sum_probs=220.8
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
++|-++.|+|+|+.++||||+|+.|..|+|+|+|+.+||+|..+..|.|.|+.- +.+ -.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghlt---------------g~~------D~ 78 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLT---------------GDF------DD 78 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEecccccccc---------------CCc------cC
Confidence 579999999999999999999999999999999999999999999999998522 211 12
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
++++|..-|+ + +..++ +.+. +.+.+.|.+++++|||.++.+.+.++ .+.+.+.++
T Consensus 79 gddKIi~~A~---~--------------~g~~~---~e~a----~~~~~~f~~d~~~Lni~~~~~~p~at-ehi~~~i~~ 133 (481)
T PRK14534 79 GEDKVVKAAR---E--------------RGLTV---YEIS----RFFTEAFFDDCKKLNIVYPDKVLVAS-EYIPIMIEV 133 (481)
T ss_pred CCcHHHHHHH---H--------------cCCCH---HHHH----HHHHHHHHHHHHHcCCCCCceecCcc-chHHHHHHH
Confidence 3444533221 1 22233 2333 77788899999999999988776554 345778999
Q ss_pred HHHHHHcCCeeeeCCcEEEEeccC---CC-------------------------CcceEEEc-----cCCccccchh---
Q psy5226 283 TKLLIQSGKTYYKDGALWLRTTDY---GD-------------------------DKDRVVRK-----SNGDFTYFVS--- 326 (582)
Q Consensus 283 i~~L~~~g~~~~~~Ga~~~~~~~~---g~-------------------------~~~~vl~k-----sDG~~~Y~~~--- 326 (582)
++.|.++|++|+.+|.+||+..+| |. ..|.+|+| .+|.+.+.++
T Consensus 134 i~~L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~ 213 (481)
T PRK14534 134 VKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGF 213 (481)
T ss_pred HHHHHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCC
Confidence 999999999999999999987654 11 01345665 2455555442
Q ss_pred -hHHHHHhhhh---cCCceEEEE--EecCcc-----hhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccC
Q psy5226 327 -DIAYHIFKWE---RGFIQAINI--QGDDHQ-----GTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKR 395 (582)
Q Consensus 327 -DiA~~~~r~~---~~~d~~i~V--~g~dh~-----~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr 395 (582)
=.+||+.... ..+...++| .|.|+. +..+|.. .+. |.++++ .|+|.||+++ +|+ |||||
T Consensus 214 GrPgWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~---a~~--g~~~~~-~W~H~g~l~~--~g~--KMSKS 283 (481)
T PRK14534 214 GYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAE---CYL--NKKWCD-MFVHGEFLIM--EYE--KMSKS 283 (481)
T ss_pred cCCcHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHh---hhc--CCCcce-EEEEecEEEe--cCc--eeccc
Confidence 1234554421 112233444 466733 3344433 334 777664 8999999987 677 99999
Q ss_pred CCCcccHHHHHHH-HHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy5226 396 SGSYITIRNLIKW-LSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSL 474 (582)
Q Consensus 396 ~G~~v~l~dll~~-~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~si 474 (582)
.||+++++|++++ . +++++||++|+.+++++++||++.+.+..+ ..-.++.+..++.+-
T Consensus 284 lGN~i~l~dll~~~~------------------~~~alR~~lls~~yr~~l~Fs~e~l~~a~~--~~~~~~~~~~~~~~~ 343 (481)
T PRK14534 284 NNNFITIKDLEDQGF------------------SPLDFRYFCLTAHYRTQLKFTFNNLKACKI--ARENMLNKLTYFYSS 343 (481)
T ss_pred CCCcccHHHHHhcCC------------------ChhHHHHHHHhCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 9999999999987 5 889999999999999999999999987432 111222222222111
Q ss_pred HHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhh
Q psy5226 475 LNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGY 539 (582)
Q Consensus 475 lrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~f 539 (582)
+... ..... ..+. .+.+.. ....+++.+.+|++ +++...++..|+++++..|+.
T Consensus 344 ~~~~-~~~~~---~~~~----~~~~~~---~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~~ 398 (481)
T PRK14534 344 LDQF-DLNLL---NKDL----ENIEFS---LEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLS 398 (481)
T ss_pred hhhc-ccccc---cccc----ccchhh---hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHh
Confidence 1110 00000 0000 000000 11234556666665 578888888999999999864
No 23
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.4e-29 Score=275.05 Aligned_cols=309 Identities=19% Similarity=0.300 Sum_probs=218.8
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++|-++.|+|+|+.++||||+|+.|..|+|+|+|+..||+|..+..++|+|..+-.
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~---------------------- 302 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIA---------------------- 302 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHH----------------------
Confidence 4567999999999999999999999999999999999999999999999998864311
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChH
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVS 280 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~ 280 (582)
-| . + +..++ ..+. +.+.+.|.++++.|||.++.+..-.+ .+.+.+.
T Consensus 303 ---------~A---~-e-------------~G~sp---~ela----~~y~~~F~~d~~~LnI~~p~~~praT-eHI~~ii 348 (699)
T PRK14535 303 ---------RA---A-E-------------NGETI---GELT----ARFIQAMHEDADALGVLRPDIEPKAT-ENIPQMI 348 (699)
T ss_pred ---------HH---H-H-------------cCCCH---HHHH----HHHHHHHHHHHHHcCCCCCcEeeCcc-chHHHHH
Confidence 11 1 0 12222 2333 67778899999999999976543332 3356789
Q ss_pred HHHHHHHHcCCeeee-CCcEEEEeccC---CC-----------------------CcceEEEcc--CCccccchh----h
Q psy5226 281 LVTKLLIQSGKTYYK-DGALWLRTTDY---GD-----------------------DKDRVVRKS--NGDFTYFVS----D 327 (582)
Q Consensus 281 ~~i~~L~~~g~~~~~-~Ga~~~~~~~~---g~-----------------------~~~~vl~ks--DG~~~Y~~~----D 327 (582)
++++.|.++|++|+. +|.+||++..| |. ..|.+|+|+ .|.+.+.++ -
T Consensus 349 ~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GR 428 (699)
T PRK14535 349 AMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGR 428 (699)
T ss_pred HHHHHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCC
Confidence 999999999999986 68899987654 21 023466663 455555443 1
Q ss_pred HHHHHhhhh---cCCceEEEEEe--cC----cc-hhHHHHHHHHHHHHcCCC----------------CCCCcEEEEEEE
Q psy5226 328 IAYHIFKWE---RGFIQAINIQG--DD----HQ-GTITRVKAGLQAINIGIP----------------NDYPNYILHKMV 381 (582)
Q Consensus 328 iA~~~~r~~---~~~d~~i~V~g--~d----h~-~~~~~~~~~l~~l~~G~~----------------~~~~~~~~~~~v 381 (582)
-+||+.+.. .-++..|+|+| .| || +.++|..++ . |.. +. ..|+|.||+
T Consensus 429 PGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~---~--g~~~~~~~~~~~~~~~~~~~a-ryWmHnG~V 502 (699)
T PRK14535 429 PGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGA---T--GHTCGHHHAQTHHGQSIASHV-KYWLHNGFI 502 (699)
T ss_pred CchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHh---h--CCCcccccccccccccccccc-cEEEECCeE
Confidence 235555431 12344566664 45 33 456665432 3 541 23 389999999
Q ss_pred EEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCch
Q psy5226 382 TVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPV 461 (582)
Q Consensus 382 ~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~ 461 (582)
++ +|+ |||||.||++++.|+++++ +++++||++|+.+++++++|+++.+.+..
T Consensus 503 ~v--dGe--KMSKSLGN~it~~dlLe~y------------------gpdalRl~lLsshYRspL~fS~e~Le~Ak----- 555 (699)
T PRK14535 503 RV--DGE--KMSKSLGNFFTIREVLKQY------------------DPEVVRFFILRAHYRSPLNYSDAHLDDAK----- 555 (699)
T ss_pred ee--CCC--ccCCCCCCcCCHHHHHHhC------------------CHHHHHHHHHcCCCCCCCCcCHHHHHHHH-----
Confidence 86 788 9999999999999999998 99999999999999999999999887622
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhh
Q psy5226 462 YYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGY 539 (582)
Q Consensus 462 ~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~f 539 (582)
-++.|+...++.... . .. . +...+..+++.+.+|++ +++...++..|+++++..|+.
T Consensus 556 ----~~l~Rl~~~l~~~~~--~------~~--~-------~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 556 ----GALTRLYTTLKNTPA--A------EF--M-------LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKT 613 (699)
T ss_pred ----HHHHHHHHHHHhhhh--c------cc--h-------hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 123455555543210 0 00 0 01123346667777766 478888888999999999975
No 24
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.3e-29 Score=280.27 Aligned_cols=335 Identities=18% Similarity=0.156 Sum_probs=230.1
Q ss_pred cEEEEEEecCCCCCCCccchhhhh-HHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQC-AIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~-iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
++++|.-.-|||+|.+||||+|+. ++.|+++|++|..|++|..+..++|+|..+-.-
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~---------------------- 60 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELA---------------------- 60 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHH----------------------
Confidence 468898999999999999999998 999999999999999999999999999754211
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSL 281 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~ 281 (582)
++ + ++.++. .+ ++.+.+.|++++++|||.+|.+.+.++..+...+.+
T Consensus 61 ---------a~----~-------------~g~~~~---~~----~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~ 107 (556)
T PRK12268 61 ---------AK----K-------------EGVTPQ---EL----ADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQE 107 (556)
T ss_pred ---------HH----H-------------cCCCHH---HH----HHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHH
Confidence 10 0 112232 12 266678889999999999998877774444578899
Q ss_pred HHHHHHHcCCeeeeCCcEEEEe--cc-------------------CCCCcc-------------eEEEccCCccccch--
Q psy5226 282 VTKLLIQSGKTYYKDGALWLRT--TD-------------------YGDDKD-------------RVVRKSNGDFTYFV-- 325 (582)
Q Consensus 282 ~i~~L~~~g~~~~~~Ga~~~~~--~~-------------------~g~~~~-------------~vl~ksDG~~~Y~~-- 325 (582)
++++|.++|++|+.++.+++.. .. +|+..+ ..-.+++..+.+..
T Consensus 108 ~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~ 187 (556)
T PRK12268 108 FFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETE 187 (556)
T ss_pred HHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecc
Confidence 9999999999998665544321 10 111000 00000100011000
Q ss_pred ---------h------------------------------hHHHHHhhhhc--------CCceEEEEE------------
Q psy5226 326 ---------S------------------------------DIAYHIFKWER--------GFIQAINIQ------------ 346 (582)
Q Consensus 326 ---------~------------------------------DiA~~~~r~~~--------~~d~~i~V~------------ 346 (582)
+ |.+-.+.++ | ..+++||||
T Consensus 188 qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~-WGipiP~~~~~~~~iyvW~da~~~y~~~~~ 266 (556)
T PRK12268 188 HFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLD-WGIPVPWPGFEGKVFYVWFDAVIGYISASK 266 (556)
T ss_pred eEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCC-CCeeCCCCCCCCcEEEEeehHhhHHHHHHH
Confidence 0 000000000 0 013445554
Q ss_pred ---------------------------ecCcch-hHHHHHHHHHHHHcC--CCCCCCcEEEEEEEEEeeCCeeeecccCC
Q psy5226 347 ---------------------------GDDHQG-TITRVKAGLQAINIG--IPNDYPNYILHKMVTVIKNGKEVKISKRS 396 (582)
Q Consensus 347 ---------------------------g~dh~~-~~~~~~~~l~~l~~G--~~~~~~~~~~~~~v~l~~~G~~~KMSkr~ 396 (582)
|.|... |..-..+.+.+. | +.+|. .++++||+.+ +|+ |||||+
T Consensus 267 ~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~--~~~~~~P~-~v~~~G~v~~--~G~--KMSKS~ 339 (556)
T PRK12268 267 EWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGS--GEPLKLPD-EIVSSEYLTL--EGG--KFSKSR 339 (556)
T ss_pred HHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhc--CCCCCCCC-EeeccCCEEE--CCe--eeccCC
Confidence 444321 111112333444 6 55563 7888999865 788 999999
Q ss_pred CCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy5226 397 GSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARIFSLL 475 (582)
Q Consensus 397 G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~sil 475 (582)
||+|++.|+++++ |.|++||++++..+ .+|.+|+++.+....+.+....+.+..+|+.+++
T Consensus 340 GN~I~p~dli~~y------------------GaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~ 401 (556)
T PRK12268 340 GWGIWVDDALERY------------------PPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFI 401 (556)
T ss_pred CcccCHHHHHHHc------------------CcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHH
Confidence 9999999999999 99999999998865 6999999999865445444333444447999998
Q ss_pred HhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc
Q psy5226 476 NQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI 545 (582)
Q Consensus 476 rk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v 545 (582)
++......+ . ..+ .+.++.|+..+.++.+.+.+++++++++.++++++++++.+|.|++..+.
T Consensus 402 ~~~~~~~~~---~---~~~-~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kp 464 (556)
T PRK12268 402 EKYFGGIVP---P---GEL-GDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAP 464 (556)
T ss_pred HHhcCCcCC---C---CcC-CcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 875443222 1 112 45677899999999999999999999999999999999999999987754
No 25
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.97 E-value=5.4e-29 Score=282.87 Aligned_cols=338 Identities=14% Similarity=0.125 Sum_probs=241.5
Q ss_pred cEEEEEEecCCCCCCCccchhhhh-HHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQC-AIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~-iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
++++|.-.-|+|+|++||||++++ +..|+++|++|..|++|..+...|++|+.+-.-+.
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~-------------------- 76 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAL-------------------- 76 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHH--------------------
Confidence 579998999999999999999975 66999999999999999999999999986532110
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSL 281 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~ 281 (582)
+ +.-.|+ ++ ++.+.+.|++++++|||+||.|.+.++-.+...+++
T Consensus 77 ---------------~-------------~g~~p~---e~----~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~ 121 (801)
T PLN02610 77 ---------------E-------------ENCTPK---EI----CDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQA 121 (801)
T ss_pred ---------------H-------------cCCCHH---HH----HHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHH
Confidence 0 123343 22 266778889999999999999988776656678999
Q ss_pred HHHHHHHcCCeeee--CCcEEEEecc---------------C------CCCcc--------eEEE----ccCCccc----
Q psy5226 282 VTKLLIQSGKTYYK--DGALWLRTTD---------------Y------GDDKD--------RVVR----KSNGDFT---- 322 (582)
Q Consensus 282 ~i~~L~~~g~~~~~--~Ga~~~~~~~---------------~------g~~~~--------~vl~----ksDG~~~---- 322 (582)
++.+|.++|++|+. .|.+|..+.. | ||..+ .-|+ ...|++.
T Consensus 122 ~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~ 201 (801)
T PLN02610 122 IFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRD 201 (801)
T ss_pred HHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEE
Confidence 99999999999974 3444432211 1 11000 0000 0011110
Q ss_pred ---cch--------------------------------------hhHHHHHhhhhcC--------CceEEEEEecCcchh
Q psy5226 323 ---YFV--------------------------------------SDIAYHIFKWERG--------FIQAINIQGDDHQGT 353 (582)
Q Consensus 323 ---Y~~--------------------------------------~DiA~~~~r~~~~--------~d~~i~V~g~dh~~~ 353 (582)
|+- +|++-.+ .+.|| .+++||||...-.+|
T Consensus 202 ~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR-~~~WGipvP~~~~~~~v~YVWfDAl~~Y 280 (801)
T PLN02610 202 TDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITR-DLKWGVPVPLEKYKDKVFYVWFDAPIGY 280 (801)
T ss_pred cceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceee-ecCCcccCCCCCCCCcEEEEehhhHHHH
Confidence 110 0100000 01121 358899987776666
Q ss_pred HHHHH-----------------------------------HHHHHHHcCCC--CCCCcEEEEEEEEEeeCCeeeecccCC
Q psy5226 354 ITRVK-----------------------------------AGLQAINIGIP--NDYPNYILHKMVTVIKNGKEVKISKRS 396 (582)
Q Consensus 354 ~~~~~-----------------------------------~~l~~l~~G~~--~~~~~~~~~~~v~l~~~G~~~KMSkr~ 396 (582)
++.+. ++|.+ +|.+ .+. .+..+||+++ +|+ |||||+
T Consensus 281 is~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a--~g~~~~~p~-~i~~~g~l~~--eG~--KMSKS~ 353 (801)
T PLN02610 281 VSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLG--TGENWTMMK-TISVTEYLNY--EGG--KFSKSK 353 (801)
T ss_pred HHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHh--CCCCcCCCC-EEEeccCEec--CCc--eecCcC
Confidence 55431 22233 3643 443 6677888766 788 999999
Q ss_pred CCcccHHHHHHH-HHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy5226 397 GSYITIRNLIKW-LSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARIFSL 474 (582)
Q Consensus 397 G~~v~l~dll~~-~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~si 474 (582)
||+|++.++++. + |+|++|||+++..+ .+|.+|+|+.+.++.|...++-+.+..+|+.++
T Consensus 354 GNvV~p~~~i~~~y------------------g~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~ 415 (801)
T PLN02610 354 GVGVFGNDAKDTNI------------------PVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSF 415 (801)
T ss_pred CcccCHHHHHhccC------------------CchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 8 99999999999866 799999999999988876677777778999999
Q ss_pred HH----hcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc
Q psy5226 475 LN----QWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI 545 (582)
Q Consensus 475 lr----k~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v 545 (582)
+. |+..+.+| ....... .+.+..|+..+.+..+.+.+++++++++.+++.++++++..|.|++....
T Consensus 416 i~~~~~k~~~g~vp---~~~~~~~-~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kP 486 (801)
T PLN02610 416 IAKPPGAGYGSVIP---DAPGAES-HPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 486 (801)
T ss_pred HHhhhhhccCCcCC---Ccccccc-chhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 88 45555544 1100001 23355688889999999999999999999999999999999999998754
No 26
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.97 E-value=2.1e-30 Score=241.02 Aligned_cols=154 Identities=37% Similarity=0.557 Sum_probs=140.1
Q ss_pred cchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHH
Q psy5226 427 RGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKL 506 (582)
Q Consensus 427 ~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l 506 (582)
+|.+|+||++|++++.++++|||+++++ .+||+++|+||+|+|+++|++|+...... ....+.+.+.++.|++|+..+
T Consensus 3 i~~~a~~~~~l~~~~~~~~~fd~~~~~~-~~~~~~~yi~ya~aRi~nIl~k~~~~~~~-~~~~~~~ll~~~~E~~L~~~l 80 (156)
T cd07956 3 VGVGAVKYQDLSNKRIKDYTFDWERMLS-FEGDTGPYLQYAHARLCSILRKAGETIEA-EADADLSLLPEPDERDLILLL 80 (156)
T ss_pred cchhHHHHHHHhcCCCCCceecHHHHHh-hcCCCchhHHHHHHHHHHHHHhCCCcCcc-ccccchhhcCCHHHHHHHHHH
Confidence 4899999999999999999999999998 77889999999999999999998631111 112345557789999999999
Q ss_pred hchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 507 SNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 507 ~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
.+||+++..++++.+|+.+|+|+++|+..||+||++|+|++++++.+..||.|+.++++++++||.||||+||+||
T Consensus 81 ~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~~~m 156 (156)
T cd07956 81 AKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAPERM 156 (156)
T ss_pred HHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 9999999999999999999999999999999999999999888888999999999999999999999999999999
No 27
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.2e-28 Score=257.00 Aligned_cols=309 Identities=15% Similarity=0.131 Sum_probs=212.8
Q ss_pred CCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCC
Q psy5226 120 GSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPD 199 (582)
Q Consensus 120 ~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~ 199 (582)
.++.+|-++.|+|+|++++||||+|++|..|+|+|+||.+||+|..+..++|+|..+-.-
T Consensus 5 ~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~-------------------- 64 (384)
T PRK12418 5 APGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLER-------------------- 64 (384)
T ss_pred CCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHH--------------------
Confidence 345589999999999999999999999999999999999999999999999998754211
Q ss_pred CCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCC-cccccccccccccCCC
Q psy5226 200 TAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGV-KFDNYCLESSLYKTGK 278 (582)
Q Consensus 200 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI-~fD~~~~ES~~~~~~~ 278 (582)
| . + +..+| +.++ +.+.+.|.+++++||| .+|.+.+.|+. .+.
T Consensus 65 -----------A---~-~-------------~G~~~---~e~a----~~~~~~f~~d~~~Lni~~~~~~~raTe~--i~~ 107 (384)
T PRK12418 65 -----------A---A-R-------------DGVDW---RDLA----EREIALFREDMEALRVLPPRDYVGAVES--IPE 107 (384)
T ss_pred -----------H---H-H-------------cCCCH---HHHH----HHHHHHHHHHHHHhCCCCCCccccCCCC--HHH
Confidence 1 0 0 22233 2333 6777889999999997 78989888864 467
Q ss_pred hHHHHHHHHHcCCeeeeCC----cEEEEeccC---CCC---------------------------cceEEEcc--CCccc
Q psy5226 279 VSLVTKLLIQSGKTYYKDG----ALWLRTTDY---GDD---------------------------KDRVVRKS--NGDFT 322 (582)
Q Consensus 279 i~~~i~~L~~~g~~~~~~G----a~~~~~~~~---g~~---------------------------~~~vl~ks--DG~~~ 322 (582)
+.++++.|.++|++|+.+| .+||++.++ |.. .|.+|+|+ .|.+.
T Consensus 108 ~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~ 187 (384)
T PRK12418 108 VVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPS 187 (384)
T ss_pred HHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCc
Confidence 8999999999999999887 899987654 311 01234432 23333
Q ss_pred cchh----hHHHHHhhhh---cCCceEEEEE--ecCcch-h-HHHHHHHHHHHHcCC-CCCCCcEEEEEEEEEeeCCeee
Q psy5226 323 YFVS----DIAYHIFKWE---RGFIQAINIQ--GDDHQG-T-ITRVKAGLQAINIGI-PNDYPNYILHKMVTVIKNGKEV 390 (582)
Q Consensus 323 Y~~~----DiA~~~~r~~---~~~d~~i~V~--g~dh~~-~-~~~~~~~l~~l~~G~-~~~~~~~~~~~~v~l~~~G~~~ 390 (582)
+-++ --+||+.+.. .-++..++++ |.|+.. | -..+.+..... |. ++. ..|+|.+++.. +|+
T Consensus 188 w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~--g~~~~~-~~w~H~g~l~~--~G~-- 260 (384)
T PRK12418 188 WPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAAT--GERRFA-RHYVHAGMIGL--DGE-- 260 (384)
T ss_pred ccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhc--CCCCcc-eEEEECCEECC--CCC--
Confidence 3221 0123333311 0122234454 456331 2 11223332334 66 444 48899999866 788
Q ss_pred ecccCCCCcccHHHHHHH-HHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226 391 KISKRSGSYITIRNLIKW-LSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHA 469 (582)
Q Consensus 391 KMSkr~G~~v~l~dll~~-~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~a 469 (582)
|||||+||++++.|+++. + .++++||++|+.+++++++|+++.+.+..+ .+.
T Consensus 261 KMSKSlGN~i~~~ell~~G~------------------d~~~lR~~lls~~yr~~l~fs~e~l~~a~~---------~l~ 313 (384)
T PRK12418 261 KMSKSRGNLVFVSRLRAAGV------------------DPAAIRLALLAGHYRADREWTDAVLAEAEA---------RLA 313 (384)
T ss_pred cccCcCCCcCCHHHHHhccC------------------ChhheeEEEeccCCCCCcccCHHHHHHHHH---------HHH
Confidence 999999999999998754 3 556999999999999999999999876221 234
Q ss_pred HHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhhhhc
Q psy5226 470 RIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGYYNT 542 (582)
Q Consensus 470 R~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~fy~~ 542 (582)
|+.+.++... .+ .+.++.+.+..|++ +++...++..|+++++..|.+-..
T Consensus 314 r~~~~~~~~~----------------~~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~ 364 (384)
T PRK12418 314 RWRAAAALPA----------------GP-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGD 364 (384)
T ss_pred HHHHHHhccc----------------cc-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCC
Confidence 5555443310 00 11233556666665 489999999999999999998543
No 28
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.96 E-value=1.1e-28 Score=258.41 Aligned_cols=303 Identities=15% Similarity=0.158 Sum_probs=208.7
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
+++|-++.|+|+|++++||||+|++|..|+|+|+||..||+|..+..++|+|..|-.-
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~---------------------- 91 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFER---------------------- 91 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHH----------------------
Confidence 4679999999999999999999999999999999999999999999999998754211
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-ccccccccccccCCChH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVK-FDNYCLESSLYKTGKVS 280 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~-fD~~~~ES~~~~~~~i~ 280 (582)
| . + +..+| ++++ +.+.+.|.+++++|||. +|.+.+.|+. .+.+.
T Consensus 92 ---------A---~-~-------------~g~t~---~ela----~~y~~~f~~d~~~Lni~~~d~~~RaTe~--i~~ii 136 (411)
T TIGR03447 92 ---------A---E-R-------------DGVDW---RELG----TSQIDLFREDMEALRVLPPRDYIGAVES--IDEVI 136 (411)
T ss_pred ---------H---H-H-------------cCCCH---HHHH----HHHHHHHHHHHHHcCCCCCCcccCCCCC--HHHHH
Confidence 1 1 0 12233 2333 67778899999999986 7888888864 36789
Q ss_pred HHHHHHHHcCCeeeeCC----cEEEEeccC---CCC---------------------------cceEEEcc--CCccccc
Q psy5226 281 LVTKLLIQSGKTYYKDG----ALWLRTTDY---GDD---------------------------KDRVVRKS--NGDFTYF 324 (582)
Q Consensus 281 ~~i~~L~~~g~~~~~~G----a~~~~~~~~---g~~---------------------------~~~vl~ks--DG~~~Y~ 324 (582)
++++.|.++|++|+.+| .+||++.++ |.. .|.+|+|. .|.+.+.
T Consensus 137 ~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~ 216 (411)
T TIGR03447 137 EMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWD 216 (411)
T ss_pred HHHHHHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCcc
Confidence 99999999999999876 799987654 310 01233332 2333232
Q ss_pred hh----hHHHHHhhhh---cCCceEEEEE--ecCcch--hHHHHHHHHHHHHcCC-CCCCCcEEEEEEEEEeeCCeeeec
Q psy5226 325 VS----DIAYHIFKWE---RGFIQAINIQ--GDDHQG--TITRVKAGLQAINIGI-PNDYPNYILHKMVTVIKNGKEVKI 392 (582)
Q Consensus 325 ~~----DiA~~~~r~~---~~~d~~i~V~--g~dh~~--~~~~~~~~l~~l~~G~-~~~~~~~~~~~~v~l~~~G~~~KM 392 (582)
++ --+||+.+.. .-+...|+++ |.|+.. |...+.++..+. |. +++ ..|+|.+++.+ +|+ ||
T Consensus 217 spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~--g~~~~~-~~w~H~g~l~~--~G~--KM 289 (411)
T TIGR03447 217 SPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAAT--GVRRMA-RHYVHAGMIGL--DGE--KM 289 (411)
T ss_pred CCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhc--CCCCcc-eEEEECCEECc--CCC--Cc
Confidence 21 0123443321 1123446666 566331 222233333345 76 555 48999999866 788 99
Q ss_pred ccCCCCcccHHHHHHH-HHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHH
Q psy5226 393 SKRSGSYITIRNLIKW-LSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARI 471 (582)
Q Consensus 393 Skr~G~~v~l~dll~~-~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~ 471 (582)
|||+||++++.|+++. + +++++||++++.+++++++|+.+.+.+.. -.+.|+
T Consensus 290 SKSlGN~i~~~dl~~~g~------------------dp~~lRl~lls~~Yr~pl~fs~e~l~~a~---------~~l~rl 342 (411)
T TIGR03447 290 SKSLGNLVFVSKLRAAGV------------------DPAAIRLGLLAGHYRQDRDWTDAVLAEAE---------ARLARW 342 (411)
T ss_pred cCcCCCCCCHHHHHhcCC------------------CcccEEEEEecCCCCCCCccCHHHHHHHH---------HHHHHH
Confidence 9999999999999775 5 78899999999999999999999987622 123344
Q ss_pred HHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHh
Q psy5226 472 FSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHG 538 (582)
Q Consensus 472 ~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~ 538 (582)
...+.+.. .+ + +..+.+.+..|++ +++...++.-|+++++..|.
T Consensus 343 ~~~~~~~~----------------~~-~------~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~ 387 (411)
T TIGR03447 343 RAALAATD----------------AP-D------ATDLIARLRQHLANDLDTPAALAAVDNWAAAALS 387 (411)
T ss_pred HHHHhhcc----------------cc-h------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 44443210 00 0 1122334445544 68888999999999998775
No 29
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.96 E-value=1.5e-28 Score=244.95 Aligned_cols=252 Identities=23% Similarity=0.303 Sum_probs=165.3
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++|-++.|+|+++...||||+|+.|..|+|.|+|++.||+|+.+..|.|..-.+
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKi------------------------ 60 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKI------------------------ 60 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHH------------------------
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHH------------------------
Confidence 57889999999999999999999999999999999999999999999999965311
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-cccccccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKF-DNYCLESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~f-D~~~~ES~~~~~~~i 279 (582)
.+-| . +.+.+ |.++. +.+.+.|.++|++|||.. +.+.+-|+.. +.|
T Consensus 61 -------i~~A---~---------------~~g~~--~~ela----~~y~~~f~~dm~~Lnv~~p~~~prate~i--~~i 107 (300)
T PF01406_consen 61 -------IKRA---R---------------EEGVS--PQELA----RRYEEEFFEDMKALNVLPPDHYPRATEHI--PEI 107 (300)
T ss_dssp -------HHHH---H---------------HTTS---HHHHH----HHHHHHHHHHHHHTT----SEEEEGGGGH--HHH
T ss_pred -------HHHH---H---------------hccCC--HHHHH----HHHHHHHHHHHHHcCCCCCccccchhccH--HHH
Confidence 1111 1 22322 33343 677888999999999988 6777777643 568
Q ss_pred HHHHHHHHHcCCeeeeC-CcEEEEeccC---CC-----------------------CcceEEEcc--CCccccchhh---
Q psy5226 280 SLVTKLLIQSGKTYYKD-GALWLRTTDY---GD-----------------------DKDRVVRKS--NGDFTYFVSD--- 327 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~-Ga~~~~~~~~---g~-----------------------~~~~vl~ks--DG~~~Y~~~D--- 327 (582)
.++++.|.++|++|+.+ |.+||+++++ |. ..|.+|+|. .|.+.+.++-
T Consensus 108 i~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~G 187 (300)
T PF01406_consen 108 IELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKG 187 (300)
T ss_dssp HHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSE
T ss_pred HHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccC
Confidence 88999999999999988 9999998754 21 124577764 3445444421
Q ss_pred -HHHHHhhhh---cCCceEEEEE--ecCcch--hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc
Q psy5226 328 -IAYHIFKWE---RGFIQAINIQ--GDDHQG--TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY 399 (582)
Q Consensus 328 -iA~~~~r~~---~~~d~~i~V~--g~dh~~--~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~ 399 (582)
-+||+.+.. .-++..|+|+ |.|+.. |--...|+..+. |.++. ..|+|.||+++ +|+ |||||.||+
T Consensus 188 RPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~--g~~~a-~~W~H~g~l~~--~g~--KMSKSlgN~ 260 (300)
T PF01406_consen 188 RPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT--GKPFA-NYWMHNGHLNV--DGE--KMSKSLGNF 260 (300)
T ss_dssp EE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH--SS-SE-EEEEEE--EEE--TTC--E--TTTT--
T ss_pred cCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh--CchHH-HHHHHHHHHhh--cCc--cccccCCCE
Confidence 235555432 1122335554 567442 222223333445 75565 48999999987 788 999999999
Q ss_pred ccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhh
Q psy5226 400 ITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALK 454 (582)
Q Consensus 400 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~ 454 (582)
++++|+++.+ +++++||++|+.+++++++|+++.+.+
T Consensus 261 ~~i~dll~~~------------------~~~~lR~~~l~~hYr~~l~~s~~~l~~ 297 (300)
T PF01406_consen 261 ITIRDLLKKY------------------SPDALRLFLLSTHYRKPLNFSEENLEE 297 (300)
T ss_dssp -BHHHHHTTS-------------------HHHHHHHHHTS-TTS-EEE-HHHHHH
T ss_pred EEHHHHhhcC------------------CHHHHHHHHhcCCCCCccccCHHHHHH
Confidence 9999999988 999999999999999999999998876
No 30
>KOG2007|consensus
Probab=99.95 E-value=1.4e-26 Score=238.06 Aligned_cols=357 Identities=19% Similarity=0.241 Sum_probs=246.7
Q ss_pred CCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHH-HcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCC
Q psy5226 120 GSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFI-SQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWP 198 (582)
Q Consensus 120 ~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~-~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~ 198 (582)
.++++|-.+.|+|+++..-||||+|++|-.|+|.|+|+ +.||+|+.+..|.|..-.| +
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKI---I------------------ 109 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKI---I------------------ 109 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHH---H------------------
Confidence 35677999999999999999999999999999999999 9999999999999955321 1
Q ss_pred CCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-cccccccccccCC
Q psy5226 199 DTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKF-DNYCLESSLYKTG 277 (582)
Q Consensus 199 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~f-D~~~~ES~~~~~~ 277 (582)
.-|+ .+.. ..+|-.|+.. ...+.++|.++|.+|+|-. |...+-|+.+ +
T Consensus 110 ----------~RAr--~~~m-------------~e~~~~l~~~----F~~~e~eF~~DM~~LnvLpPtv~tRVSeyv--p 158 (586)
T KOG2007|consen 110 ----------KRAR--KEEM-------------GEKPLSLSER----FCYYEEEFLQDMAALNVLPPTVQTRVSEYV--P 158 (586)
T ss_pred ----------HHhh--hhhh-------------ccchhhHHHH----HHHHHHHHHHHHHHhCCCCCcccchhhhch--H
Confidence 1111 0000 0112223322 1256688999999999976 6788888654 6
Q ss_pred ChHHHHHHHHHcCCeeeeCCcEEEEeccCCC-Ccce-----EEEccCCccc----cchhhHHHHHhhhh----------c
Q psy5226 278 KVSLVTKLLIQSGKTYYKDGALWLRTTDYGD-DKDR-----VVRKSNGDFT----YFVSDIAYHIFKWE----------R 337 (582)
Q Consensus 278 ~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~-~~~~-----vl~ksDG~~~----Y~~~DiA~~~~r~~----------~ 337 (582)
.|.++|+.++++|++|..+|.+||++.+|+. -... .+.-+.|... -...| .++||.. |
T Consensus 159 ~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~D--FALWKAsK~gEP~WeSPW 236 (586)
T KOG2007|consen 159 QIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPAD--FALWKASKPGEPSWESPW 236 (586)
T ss_pred HHHHHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhh--hhhhhhcCCCCCCCCCCC
Confidence 7888999999999999999999999987652 0001 1222223222 01123 4556532 2
Q ss_pred C---CceEE--------------EEEe--cC-----cchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecc
Q psy5226 338 G---FIQAI--------------NIQG--DD-----HQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKIS 393 (582)
Q Consensus 338 ~---~d~~i--------------~V~g--~d-----h~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMS 393 (582)
| ++|.| +|+| .| |.+.++|..+..+ .-.|.+ +|+|.|++++ +|. |||
T Consensus 237 G~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~----~~~wVn-YflHtGhL~i--~g~--KMS 307 (586)
T KOG2007|consen 237 GKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFD----DSQWVN-YFLHTGHLTI--NGE--KMS 307 (586)
T ss_pred CCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhc----CCccce-eEEEcCeeee--ccc--hhh
Confidence 1 34443 4543 33 3356766554322 122443 8899999988 677 999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHH
Q psy5226 394 KRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFS 473 (582)
Q Consensus 394 kr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~s 473 (582)
||.+|+||+.|+|+.+ .+.++|.++|+.+++++++|+-..|..... .-..+..-+.-+.+
T Consensus 308 KSLkNFiTIke~Lk~~------------------sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q--~e~~~~~ff~~~~a 367 (586)
T KOG2007|consen 308 KSLKNFITIKEALKKY------------------SPRQLRLAFLLHQWRSPLDYSDSTMEQALQ--LEKSLNNFFLDVKA 367 (586)
T ss_pred hhhccceeHHHHHHhc------------------CHHHHHHHHHHHHhcCcCCchHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999775543111 00001111112222
Q ss_pred HHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhhhhcccccCCChhh
Q psy5226 474 LLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGYYNTERILVKNITI 552 (582)
Q Consensus 474 ilrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~ 552 (582)
+.+. ..+ +..+ .+.|.+|...+..-...++.|.. +.....+++.+.+|....|.|.....
T Consensus 368 l~~~--~~~--------~~~~-~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~-------- 428 (586)
T KOG2007|consen 368 LLRG--AKP--------FEKL-SEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG-------- 428 (586)
T ss_pred HHhc--cch--------hhcc-ChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhc--------
Confidence 2222 111 2223 57888999999888888888855 57888999999999999999987653
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy5226 553 KMARLALIYSIGQVLNNGLKLIGISA 578 (582)
Q Consensus 553 ~~~RL~L~~a~~~vL~~~L~lLGi~~ 578 (582)
..++-.++.++..-+.+.|.++|+..
T Consensus 429 ~~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 429 ERPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCCc
Confidence 12233778888889999999999975
No 31
>KOG0436|consensus
Probab=99.94 E-value=5.4e-26 Score=228.61 Aligned_cols=340 Identities=15% Similarity=0.173 Sum_probs=240.1
Q ss_pred CCcEEEEEEecC--CCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCC
Q psy5226 121 SNKKILIEFVSA--NPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWP 198 (582)
Q Consensus 121 ~~~~v~Ve~ssp--N~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~ 198 (582)
.+++.. ++.| +|+-++|+||++|+++.|+|+|.-+..|..|+..-..+.+|..+...+.
T Consensus 37 ~~~~~~--lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaa----------------- 97 (578)
T KOG0436|consen 37 EGETFV--LTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAA----------------- 97 (578)
T ss_pred CCceeE--EecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHh-----------------
Confidence 445444 4666 8999999999999999999999999999999987777776654432211
Q ss_pred CCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCC
Q psy5226 199 DTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGK 278 (582)
Q Consensus 199 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~ 278 (582)
. +.-+|. +++ |...+.|.+.++..||.|+.|.+.++.-|...
T Consensus 98 ------------------t-------------nG~~P~---e~c----Dr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~ 139 (578)
T KOG0436|consen 98 ------------------T-------------NGRNPP---ELC----DRISQSFRQLWKDAGIAYTKFIRTTDPKHEAI 139 (578)
T ss_pred ------------------h-------------cCCChH---HHH----hhhhHHHHHHHHHhCcchhheeecCCchHHHH
Confidence 1 112332 234 55567789999999999999999998777778
Q ss_pred hHHHHHHHHHcCCeee--eCCcEEEEeccCCCC------------------cceEEEccCCccccc--------------
Q psy5226 279 VSLVTKLLIQSGKTYY--KDGALWLRTTDYGDD------------------KDRVVRKSNGDFTYF-------------- 324 (582)
Q Consensus 279 i~~~i~~L~~~g~~~~--~~Ga~~~~~~~~g~~------------------~~~vl~ksDG~~~Y~-------------- 324 (582)
++++...+.++|++|. .+|.+|+..+.|-++ +..|+.++.-.+-+.
T Consensus 140 Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrk 219 (578)
T KOG0436|consen 140 VQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRK 219 (578)
T ss_pred HHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhc
Confidence 8999999999999997 468888766554221 012333332222111
Q ss_pred ---------------------hhhHHHHH--hhhhcC------CceEEEEEecCcchhHHHHH-----------------
Q psy5226 325 ---------------------VSDIAYHI--FKWERG------FIQAINIQGDDHQGTITRVK----------------- 358 (582)
Q Consensus 325 ---------------------~~DiA~~~--~r~~~~------~d~~i~V~g~dh~~~~~~~~----------------- 358 (582)
.+|+.-.+ -|+.|| ....||||..+-.+|++.+.
T Consensus 220 NP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wP 299 (578)
T KOG0436|consen 220 NPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWP 299 (578)
T ss_pred CCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCC
Confidence 12322111 122232 34689999877666665431
Q ss_pred --------HHHH---------HHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhh
Q psy5226 359 --------AGLQ---------AINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEF 421 (582)
Q Consensus 359 --------~~l~---------~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~ 421 (582)
.+++ .|.||.+.|. .++.|+|.+ .+|. |||||.||+|.+.++++.+
T Consensus 300 at~HvIGKDIlrFHavYWPafLmaAGlplP~-~I~vHghwt--~ngm--KMsKSLGNvvdP~~l~~ky------------ 362 (578)
T KOG0436|consen 300 ATLHVIGKDILRFHAVYWPAFLMAAGLPLPK-MIFVHGHWT--KNGM--KMSKSLGNVVDPFELVQKY------------ 362 (578)
T ss_pred ceeeehhhhhhhhhhhhhHHHHHhcCCCCcc-EEEEeeeee--ecce--ecchhhccccCHHHHHHHh------------
Confidence 1111 1135988875 554555544 4787 9999999999999999999
Q ss_pred HhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHHHH--HHHhcCCCCCcccccccCCCCCCHH
Q psy5226 422 REDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARIFS--LLNQWGGDKKSLISIKDLSSLNTEK 498 (582)
Q Consensus 422 ~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~s--ilrk~~~~~~~~~~~~d~~~l~~~~ 498 (582)
|+|++|||+|++.. +.|.+|+.+++....|...+.-+....+|+++ +.-+..+.... ....+. ..+
T Consensus 363 ------gvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~-~~s~~v----~ae 431 (578)
T KOG0436|consen 363 ------GVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLV-VDSPTV----AAE 431 (578)
T ss_pred ------CccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccc-cCCcch----hhc
Confidence 99999999999854 89999999999886766666677778899998 44433332221 111111 123
Q ss_pred HHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc
Q psy5226 499 ELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI 545 (582)
Q Consensus 499 e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v 545 (582)
...|...+...|++..+.++.+....+|+.++.+..+.|+|.+...-
T Consensus 432 ~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aP 478 (578)
T KOG0436|consen 432 GEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAP 478 (578)
T ss_pred cchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCC
Confidence 34588889999999999999999999999999999999999987643
No 32
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.94 E-value=2.6e-26 Score=237.37 Aligned_cols=263 Identities=19% Similarity=0.297 Sum_probs=185.6
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
.+++| -|++.|+|++||||+|+.+.+|+++|.+|.+|++|..++..+|+|. +.++ |..+......|
T Consensus 19 ~~~~v-~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrKv------------p~~l~~~~~~~ 84 (353)
T cd00674 19 EKYVV-ASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRKV------------PPNVPESYEQY 84 (353)
T ss_pred CeEEE-ecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-cccc------------ccchhhHHHHh
Confidence 45777 4667899999999999999999999999999999999999999974 2111 11000001224
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
.|.++..+++. .|.+..| ++++.+.|++.+++|||++|.+. .++.|+++...+.
T Consensus 85 ~G~pi~~ip~p------------------~g~~~~~-------~d~~~~~f~~~l~~lgi~~d~~~-~T~~y~~g~~~~~ 138 (353)
T cd00674 85 IGMPLSSVPDP------------------FGCCESY-------AEHFERPFEESLEKLGIEVEFIS-QSQMYKSGLYDEN 138 (353)
T ss_pred cCccchhchhh------------------cCCCHHH-------HHHHHHHHHHHHHHcCCeeeeee-cCCchhhchHHHH
Confidence 45555433311 1211112 38888999999999999999554 5668888776555
Q ss_pred H-HHHHHcCCeee---------eCCcEE---EEeccCCCCcceEEEccC---Cccccchh-------hH----HHHHhhh
Q psy5226 283 T-KLLIQSGKTYY---------KDGALW---LRTTDYGDDKDRVVRKSN---GDFTYFVS-------DI----AYHIFKW 335 (582)
Q Consensus 283 i-~~L~~~g~~~~---------~~Ga~~---~~~~~~g~~~~~vl~ksD---G~~~Y~~~-------Di----A~~~~r~ 335 (582)
+ ..|++++.+.+ ....++ ..++++|... ..++.-| |+..|.+. |+ +..-||+
T Consensus 139 i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~-~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~ 217 (353)
T cd00674 139 ILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDT-TTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRV 217 (353)
T ss_pred HHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcce-eEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCC
Confidence 5 66877877653 112221 2345667432 3333323 45667642 33 2456777
Q ss_pred hcCCceE-----EEEEecCcchh---HHHHHHHHH-HHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHH
Q psy5226 336 ERGFIQA-----INIQGDDHQGT---ITRVKAGLQ-AINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLI 406 (582)
Q Consensus 336 ~~~~d~~-----i~V~g~dh~~~---~~~~~~~l~-~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll 406 (582)
+|+..|. +=++|+||..+ +.++..+++ ++ |+++| ..+.++|+.+ ++|+ |||||+||+|+++|++
T Consensus 218 dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~il--g~~~P--~~~~ye~V~l-~gg~--KMSKSkGnvI~~~dll 290 (353)
T cd00674 218 DWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIF--GGEPP--VPVMYEFIGL-KGGG--KMSSSKGNVITPSDWL 290 (353)
T ss_pred CchhhhhhcCCCEEeeCccccccccHHHHHHHHHHHHh--CCCCC--eEEEeeeEEe-CCCC--ccCCCCCCcCCHHHHH
Confidence 7644333 45799999988 999999998 99 98776 4577899865 3444 8999999999999999
Q ss_pred HHHHhhhhcCCChhhHhhhhcchhhHHHHHhccC-CCCcccccHHH
Q psy5226 407 KWLSKTESKNDSIEFREDLIRGRDLMRFFLISRK-SDTDFIFDIDL 451 (582)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~ 451 (582)
+++ +++++||++++.. +.+++.||++.
T Consensus 291 ~~~------------------~~dalR~~~l~~~~~~~~i~Fd~~~ 318 (353)
T cd00674 291 EVA------------------PPEVLRYLYARRKNPEKHIGFDLDI 318 (353)
T ss_pred HHh------------------ChHHHHHHHHhCCCCCCCCCcChhH
Confidence 998 9999999999987 78999999864
No 33
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.94 E-value=4.4e-26 Score=236.47 Aligned_cols=244 Identities=23% Similarity=0.338 Sum_probs=171.9
Q ss_pred EEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy5226 124 KILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYN 203 (582)
Q Consensus 124 ~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 203 (582)
+++|.-+-|+|+|++||||+|+.++.|+++|++|..|++|..+..++|+|..+-.-+.
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~---------------------- 58 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAE---------------------- 58 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHH----------------------
Confidence 3577788999999999999999999999999999999999999999999975532110
Q ss_pred cccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHH
Q psy5226 204 GEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVT 283 (582)
Q Consensus 204 g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i 283 (582)
+ +.-+| +++ ++.+.+.|+++|++|||.||.|.++++.++.+.+.+++
T Consensus 59 -------------~-------------~g~~~---~e~----~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~ 105 (319)
T cd00814 59 -------------E-------------EGVTP---QEL----CDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFF 105 (319)
T ss_pred -------------H-------------cCCCH---HHH----HHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHH
Confidence 0 11233 223 36778889999999999999998888766667899999
Q ss_pred HHHHHcCCeeeeC-------------------CcEEEEeccCCC--------C---------------------cceEEE
Q psy5226 284 KLLIQSGKTYYKD-------------------GALWLRTTDYGD--------D---------------------KDRVVR 315 (582)
Q Consensus 284 ~~L~~~g~~~~~~-------------------Ga~~~~~~~~g~--------~---------------------~~~vl~ 315 (582)
++|.++|++|+.+ ..++|+++++.+ . .|..+.
T Consensus 106 ~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~is 185 (319)
T cd00814 106 KKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSIT 185 (319)
T ss_pred HHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCC
Confidence 9999999999743 334455543310 0 011122
Q ss_pred cc-----------CCccccchhhH--HHH------Hhh------hhcCCceEEEEEecCcchhHHHH-HHHHHHHHcCCC
Q psy5226 316 KS-----------NGDFTYFVSDI--AYH------IFK------WERGFIQAINIQGDDHQGTITRV-KAGLQAINIGIP 369 (582)
Q Consensus 316 ks-----------DG~~~Y~~~Di--A~~------~~r------~~~~~d~~i~V~g~dh~~~~~~~-~~~l~~l~~G~~ 369 (582)
|. .|.+.|..-|- +|. .++ +..+....+++.|.|+..+-... .+++.++ |++
T Consensus 186 R~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~--~~~ 263 (319)
T cd00814 186 RDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGA--GLP 263 (319)
T ss_pred ccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhC--CCC
Confidence 21 12334444341 110 000 01122346778888865422112 2345556 877
Q ss_pred CCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccc
Q psy5226 370 NDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIF 447 (582)
Q Consensus 370 ~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F 447 (582)
++. .+++++|+.+ +|+ |||||+||+|++.|+++++ +++++||++++..+ .+|.+|
T Consensus 264 ~~~-~~~~~~~~~~--~g~--kmSkS~gn~i~~~~~l~~~------------------~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 264 LPT-RIVAHGYLTV--EGK--KMSKSRGNVVDPDDLLERY------------------GADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCc-EeeeeeeEEE--CCe--eecccCCcccCHHHHHHHc------------------CchHHHHHHHhcCCCCCCCCC
Confidence 664 8889999977 687 9999999999999999999 99999999999876 577665
No 34
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.94 E-value=1.7e-26 Score=238.69 Aligned_cols=245 Identities=24% Similarity=0.299 Sum_probs=170.0
Q ss_pred EEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy5226 124 KILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYN 203 (582)
Q Consensus 124 ~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 203 (582)
|++|...-|+|+|++||||+|+.+++|+++|++|..|++|..+..++|+|..+-..
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~------------------------ 56 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENA------------------------ 56 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHH------------------------
Confidence 46788899999999999999999999999999999999999999999999764211
Q ss_pred cccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc--cccccccccCCChHH
Q psy5226 204 GEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDN--YCLESSLYKTGKVSL 281 (582)
Q Consensus 204 g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~--~~~ES~~~~~~~i~~ 281 (582)
++ + +..++. ++ ++++.+.|++++++|||.+|. +..+++..+...++.
T Consensus 57 -------a~----~-------------~g~~~~---e~----~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~ 105 (314)
T cd00812 57 -------AI----K-------------IGRDPE---DW----TEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQW 105 (314)
T ss_pred -------HH----H-------------cCCCHH---HH----HHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHH
Confidence 10 0 112232 22 277788899999999999983 333433333456777
Q ss_pred HHHHHHHcCCeeeeCCcEEE---------Ee--ccCCC-------Ccc-------------eEEEcc--CCcc------c
Q psy5226 282 VTKLLIQSGKTYYKDGALWL---------RT--TDYGD-------DKD-------------RVVRKS--NGDF------T 322 (582)
Q Consensus 282 ~i~~L~~~g~~~~~~Ga~~~---------~~--~~~g~-------~~~-------------~vl~ks--DG~~------~ 322 (582)
++..|.++|++|+.++.+++ ++ +++.+ ..+ .-+.|. =|.+ .
T Consensus 106 ~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~isR~~~wGipvP~~~~i 185 (314)
T cd00812 106 LFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIGCSRQRYWGTPIPWTDTM 185 (314)
T ss_pred HHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHheeeeecCCcCCcCccccc
Confidence 88899999999997766544 33 22211 000 001121 1222 1
Q ss_pred cchhhH-----HHH----------------HhhhhcCCceEEEEEecCc---c-hhHHHHHHHHHHHHcCC---CCCCCc
Q psy5226 323 YFVSDI-----AYH----------------IFKWERGFIQAINIQGDDH---Q-GTITRVKAGLQAINIGI---PNDYPN 374 (582)
Q Consensus 323 Y~~~Di-----A~~----------------~~r~~~~~d~~i~V~g~dh---~-~~~~~~~~~l~~l~~G~---~~~~~~ 374 (582)
|...|- .|. ...+.+-..--|+|+|.|| + .|+....+++..+ |+ .++ ..
T Consensus 186 ~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~--g~~~~~~~-~~ 262 (314)
T cd00812 186 ESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDE--GLVTDEPP-KG 262 (314)
T ss_pred ccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCc--ccccccCc-HH
Confidence 222221 111 0011110112389999998 4 4556667777766 86 555 36
Q ss_pred EEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccH
Q psy5226 375 YILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDI 449 (582)
Q Consensus 375 ~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~ 449 (582)
+.++||+++ +|+ |||||+||+|+++|++++. |.+++||++++..+ ++++|||
T Consensus 263 ~~~~g~v~~--~g~--KmSkS~Gn~v~~~dll~~~------------------~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 263 LIVQGMVLL--EGE--KMSKSKGNVVTPDEAIKKY------------------GADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred heecceEec--Ccc--ccCCcCCCCCCHHHHHHHh------------------CcHHHHHHHHhcCC-cCCCCCC
Confidence 678999987 687 9999999999999999998 99999999999988 9999997
No 35
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.93 E-value=5.7e-25 Score=227.72 Aligned_cols=257 Identities=20% Similarity=0.250 Sum_probs=177.2
Q ss_pred EEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy5226 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNG 204 (582)
Q Consensus 125 v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 204 (582)
.+|....|||+|++||||+|+.++.|+++|+++..||+|..+..++|+|..+-.-+. +....+ . ..
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~-------~~~~~~----~---~~ 67 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAE-------RKGGRK----K---KT 67 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHH-------HhcCcc----c---cc
Confidence 577788999999999999999999999999999999999999999999976643221 100000 0 00
Q ss_pred ccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCccc--ccccccccccCCChHHH
Q psy5226 205 EYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFD--NYCLESSLYKTGKVSLV 282 (582)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD--~~~~ES~~~~~~~i~~~ 282 (582)
.++ + +.-+.+.++ ++++.+.|++++++|||.+| .++.+++..+.+.+.++
T Consensus 68 ~~~-------------------~--------~~~~~~~~~-~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~ 119 (312)
T cd00668 68 IWI-------------------E--------EFREDPKEF-VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELI 119 (312)
T ss_pred ccH-------------------H--------HHHHHHHHH-HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHH
Confidence 000 0 111122333 37888999999999999999 77777765566789999
Q ss_pred HHHHHHcCCeee------eCCcEEEEeccCCC--------------------------CcceEEEccC--C-----cccc
Q psy5226 283 TKLLIQSGKTYY------KDGALWLRTTDYGD--------------------------DKDRVVRKSN--G-----DFTY 323 (582)
Q Consensus 283 i~~L~~~g~~~~------~~Ga~~~~~~~~g~--------------------------~~~~vl~ksD--G-----~~~Y 323 (582)
++.|.++|++|+ .+..+|++.+++.+ ..|..|.|.- | -.+|
T Consensus 120 f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~ 199 (312)
T cd00668 120 FSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFD 199 (312)
T ss_pred HHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCccccc
Confidence 999999999998 44556666654321 0133343321 2 2223
Q ss_pred chhhHH--HH---Hhhhh-----cCCceEEEEEecCcc-hhHHHHHHHHHHHHcCCC-CCCCcEEEEEEEEEeeCCeeee
Q psy5226 324 FVSDIA--YH---IFKWE-----RGFIQAINIQGDDHQ-GTITRVKAGLQAINIGIP-NDYPNYILHKMVTVIKNGKEVK 391 (582)
Q Consensus 324 ~~~DiA--~~---~~r~~-----~~~d~~i~V~g~dh~-~~~~~~~~~l~~l~~G~~-~~~~~~~~~~~v~l~~~G~~~K 391 (582)
..-|-+ +. .+..+ ......|++.|.||. .|+....+.+.++ +.. ++. .+..+||+.+ ++|+ |
T Consensus 200 ~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~--~~~~~~~-~~~~~g~~~~-~~g~--K 273 (312)
T cd00668 200 VWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVAL--FGEIPPK-NLLVHGFVLD-EGGQ--K 273 (312)
T ss_pred chhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHh--cCCCCcc-eeEECcEEEc-CCCc--c
Confidence 322211 11 11100 001234789999998 7887777777777 754 443 5555699865 4557 9
Q ss_pred cccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccC-CCCcccc
Q psy5226 392 ISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRK-SDTDFIF 447 (582)
Q Consensus 392 MSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~-~~~~~~F 447 (582)
||||+||+|+++|+++++ +++++||++++.. +.+|.+|
T Consensus 274 mSKS~gn~v~~~d~~~~~------------------~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 274 MSKSKGNVIDPSDVVEKY------------------GADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred ccccCCCcCCHHHHHHHc------------------CcHHHHHHHHhcCCccCCCCC
Confidence 999999999999999998 9999999999887 4777665
No 36
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.92 E-value=1.9e-24 Score=228.97 Aligned_cols=267 Identities=20% Similarity=0.244 Sum_probs=165.8
Q ss_pred EEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy5226 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNG 204 (582)
Q Consensus 125 v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 204 (582)
++|.-.-|+|+|++||||+.+++.+|+++|++|..|++|..+...|++|+.+..-+.
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~----------------------- 57 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAE----------------------- 57 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHH-----------------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHH-----------------------
Confidence 456677789999999999999999999999999999999999999999986532211
Q ss_pred ccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHH
Q psy5226 205 EYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTK 284 (582)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~ 284 (582)
+ ++.+|+ +++ +.+.+.|++++++|||+||.|.+.++-.+...++++++
T Consensus 58 ------------~-------------~g~~p~---~~~----~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~ 105 (391)
T PF09334_consen 58 ------------K-------------QGIDPE---EFC----DKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFK 105 (391)
T ss_dssp ------------H-------------TTS-HH---HHH----HHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHH
T ss_pred ------------H-------------cCCCHH---HHH----HHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHH
Confidence 0 223443 223 66778899999999999999998876666678999999
Q ss_pred HHHHcCCeeeeC--CcEEEE-------------e-------------ccCCCCcc---e--EEEccCCc-----------
Q psy5226 285 LLIQSGKTYYKD--GALWLR-------------T-------------TDYGDDKD---R--VVRKSNGD----------- 320 (582)
Q Consensus 285 ~L~~~g~~~~~~--Ga~~~~-------------~-------------~~~g~~~~---~--vl~ksDG~----------- 320 (582)
+|.++|++|+.+ |.+|.. + +.+|...+ . ..-+..|+
T Consensus 106 ~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~f 185 (391)
T PF09334_consen 106 RLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYF 185 (391)
T ss_dssp HHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEE
T ss_pred HHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEE
Confidence 999999999743 333311 1 11111000 0 00011111
Q ss_pred ----------------------------------------------------------cccchhhHH--HH---Hhhh--
Q psy5226 321 ----------------------------------------------------------FTYFVSDIA--YH---IFKW-- 335 (582)
Q Consensus 321 ----------------------------------------------------------~~Y~~~DiA--~~---~~r~-- 335 (582)
+.|..-|.. |. .+..
T Consensus 186 f~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~ 265 (391)
T PF09334_consen 186 FKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEK 265 (391)
T ss_dssp E-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHH
T ss_pred EehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeeccCCceEEEcchHHHHHHHHhcccccc
Confidence 112211100 00 0000
Q ss_pred -------h--c---CCceEEEEEecCcch-hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccH
Q psy5226 336 -------E--R---GFIQAINIQGDDHQG-TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITI 402 (582)
Q Consensus 336 -------~--~---~~d~~i~V~g~dh~~-~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l 402 (582)
. | +..+++++.|.|..- |..-..+++.+. |++.|. .++.++|+++ +|+ |||||+||+|++
T Consensus 266 ~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~--~~~lP~-~i~~~~~~~~--~g~--K~SkS~gn~i~~ 338 (391)
T PF09334_consen 266 RGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAA--GLPLPR-RIVVHGFLTL--DGE--KMSKSRGNVIWP 338 (391)
T ss_dssp TTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHC--TB---S-EEEEE--EEE--TTC--CEETTTTESSBH
T ss_pred ccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcc--cCCCCC-EEEeeeeEEE--CCe--eccccCCcccCH
Confidence 0 0 112344555555321 111123444555 888774 7888899877 788 999999999999
Q ss_pred HHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHH
Q psy5226 403 RNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARI 471 (582)
Q Consensus 403 ~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~ 471 (582)
+|+++++ ++|++||++++..+ .+|.+|+|+.+.++.|+..+.-+.+..+|+
T Consensus 339 ~~~~~~~------------------~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 339 DDLLEEY------------------GADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp HHHHHHH-------------------HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHhC------------------ChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 9999999 99999999999866 799999999998877744333344445675
No 37
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.92 E-value=1.1e-23 Score=204.49 Aligned_cols=193 Identities=23% Similarity=0.285 Sum_probs=139.9
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.++++.+..|+|+|++++||||+|+.++.|+++|++|..|++|..+..++|+|..+-.-
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~--------------------- 75 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKR--------------------- 75 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHH---------------------
Confidence 34667888999999999999999999999999999999999999999999999755221
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-cccccccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKF-DNYCLESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~f-D~~~~ES~~~~~~~i 279 (582)
|+ + +..+| +.+. +.+.+.|++++++|||++ |.|.+.
T Consensus 76 ----------A~----~-------------~g~~p---~e~~----~~~~~~f~~~~~~l~i~~~d~~~rt--------- 112 (213)
T cd00672 76 ----------AR----E-------------EGLSW---KEVA----DYYTKEFFEDMKALNVLPPDVVPRV--------- 112 (213)
T ss_pred ----------HH----H-------------cCCCH---HHHH----HHHHHHHHHHHHHcCCCCCCcceee---------
Confidence 10 0 12333 2233 666788899999999998 766543
Q ss_pred HHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhhHHHHHhh-hhcCCceEEEEEecCcch-hHH-H
Q psy5226 280 SLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFK-WERGFIQAINIQGDDHQG-TIT-R 356 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~DiA~~~~r-~~~~~d~~i~V~g~dh~~-~~~-~ 356 (582)
|. .. +++...+ +...+| |.+.|.|+.. |.. .
T Consensus 113 --------------------Wh-----------------------~e-c~am~~~~lg~~~d--ih~~G~Dl~fpH~~~~ 146 (213)
T cd00672 113 --------------------WH-----------------------IE-CSAMAMKYLGETFD--IHGGGVDLIFPHHENE 146 (213)
T ss_pred --------------------hh-----------------------HH-HHHHHHHHcCCCcc--EEeecCCCCcChHHHH
Confidence 10 00 1111111 111122 4466777653 332 2
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHH
Q psy5226 357 VKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFL 436 (582)
Q Consensus 357 ~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~ 436 (582)
+.+..... |.+++ ..++|.+++.+ +|+ |||||+||+|+++|+++++ +++++||++
T Consensus 147 ~a~~~a~~--g~~~~-~~~~h~~~v~~--~g~--KMSKs~Gn~v~~~dll~~~------------------~~da~R~~~ 201 (213)
T cd00672 147 IAQSEAAT--GKPFA-RYWLHTGHLTI--DGE--KMSKSLGNFITVRDALKKY------------------DPEVLRLAL 201 (213)
T ss_pred HHHHHHHh--CCCCC-cEEEEEEEEec--cCc--chhhcCCCccCHHHHHHHc------------------CHHHHHHHH
Confidence 23333344 66444 47889988876 677 9999999999999999998 999999999
Q ss_pred hccCCCCccccc
Q psy5226 437 ISRKSDTDFIFD 448 (582)
Q Consensus 437 l~~~~~~~~~F~ 448 (582)
++.++.++++||
T Consensus 202 l~~~~~~~l~f~ 213 (213)
T cd00672 202 LSSHYRSPLDFS 213 (213)
T ss_pred HhCCcCCCCCCC
Confidence 999999999986
No 38
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=99.91 E-value=2.3e-24 Score=191.25 Aligned_cols=118 Identities=40% Similarity=0.578 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcc
Q psy5226 464 IQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTE 543 (582)
Q Consensus 464 lqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~ 543 (582)
|||||+|++||++|+...+.......+. .+.++.|++|+..+.+||+++..++++++||.+|+||++||..||+||++|
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~-~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~ 79 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDF-LLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNV 79 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHH-HS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhh-hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6999999999999998765431001111 135889999999999999999999999999999999999999999999999
Q ss_pred cccCCChhhh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 544 RILVKNITIK-MARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 544 ~vl~~~~~~~-~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
+|++++++.. .+||+|+.++++||++||+||||+||+||
T Consensus 80 ~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~~~~M 119 (119)
T PF05746_consen 80 RILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEPLEKM 119 (119)
T ss_dssp -STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT----S--
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 9998776666 99999999999999999999999999999
No 39
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=1.5e-21 Score=225.59 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=123.4
Q ss_pred EEEEecCcc-hhHHHHHH-HHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRVKA-GLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~~~-~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+++.|.|+. +|+..+.. ..... |..|. ..+.++||+. ..+|+ |||||+||+|++.|+++++
T Consensus 489 ~~~~G~Di~~~w~~~~l~~~~~~~--~~~Pf-~~v~~hg~v~-~~~G~--KMSKS~GN~i~p~~~i~~y----------- 551 (800)
T PRK13208 489 LRPQGHDIIRTWLFYTILRAYLLT--GKLPW-KNIMISGMVL-DPDGK--KMSKSKGNVVTPEELLEKY----------- 551 (800)
T ss_pred EEEeecchhhhHHHHHHHHHHHhc--CCCCc-ceEEEeeEEE-CCCCC--CCCCCCCCCCCHHHHHHHc-----------
Confidence 445566654 34443322 22223 54332 4677888884 34787 9999999999999999999
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHH
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKEL 500 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~ 500 (582)
|.+++||++++..+.+|++|+++.+.. +.+...-+-++ .|....+.+ ....+ . ...+ .+.++
T Consensus 552 -------g~D~lR~~l~~~~~~~d~~fs~~~~~~--~~~~l~kl~N~-~r~~~~~~~--~~~~~---~--~~~~-~~~D~ 613 (800)
T PRK13208 552 -------GADAVRYWAASARLGSDTPFDEKQVKI--GRRLLTKLWNA-SRFVLHFSA--DPEPD---K--AEVL-EPLDR 613 (800)
T ss_pred -------CccHHHHHHhcCCCCCCceecHHHHHH--HHHHHHHHHHH-HHHHHhccc--ccccC---c--cccC-CHHHH
Confidence 999999999987889999999999754 22222222222 222211111 00000 0 0112 34566
Q ss_pred HHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHH--HHhhhhcccc--cCCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 501 SLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKE--LHGYYNTERI--LVKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 501 ~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~--~n~fy~~~~v--l~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
.++..+....+.+.+++++++.+.+++.+++++.. .|.|++..+- ...++. ..+-........+|+..+.||.
T Consensus 614 ~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~--~~~~~~~~~l~~~l~~l~~LLa 690 (800)
T PRK13208 614 WILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEE--EEQKSARYTLYTVLDTLLRLLA 690 (800)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHhc
Confidence 78889999999999999999999999999999864 6667665532 222211 1122344455566666666654
No 40
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=2.7e-23 Score=226.71 Aligned_cols=260 Identities=19% Similarity=0.258 Sum_probs=180.7
Q ss_pred EEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCC--CCCCC
Q psy5226 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTW--PDTAY 202 (582)
Q Consensus 125 v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~--~~~~~ 202 (582)
++| -|++.|+|++||||+|.++.+|+++|.||..|++|..++..+|+|. +++ .|..+.. ....|
T Consensus 25 ~~~-~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~------------lRk-vp~~~p~~~~~~~~ 90 (510)
T PRK00750 25 VVV-ETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG------------LRK-VPDNVPNQEMLEEY 90 (510)
T ss_pred EEE-EeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc------------ccc-cCCCCCchHHHHHh
Confidence 666 5677899999999999999999999999999999999999999984 011 1111100 01123
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
.|.++..+++ ..|.++.| ++++.+.|.+.+++|||+||.+. .++.|+++...+.
T Consensus 91 ~G~pl~~~p~------------------p~G~~~~~-------~~~~~~~~~~~~~~~gi~~d~~~-~t~~y~~g~~~~~ 144 (510)
T PRK00750 91 LGKPLTEIPD------------------PFGCHESY-------AEHFNAPLREFLDRFGIEYEFIS-ATECYKSGRYDEA 144 (510)
T ss_pred cCcccccCCC------------------CCCCchHH-------HHHHHHHHHHHHHHcCCceEEEe-hhhhhccCchHHH
Confidence 4444432210 11222222 38888999999999999999665 5668888877666
Q ss_pred H-HHHHHcCCeee--------eCCcEEE----EeccCCCCcceEEEccC---Cccccchh-------hH----HHHHhhh
Q psy5226 283 T-KLLIQSGKTYY--------KDGALWL----RTTDYGDDKDRVVRKSN---GDFTYFVS-------DI----AYHIFKW 335 (582)
Q Consensus 283 i-~~L~~~g~~~~--------~~Ga~~~----~~~~~g~~~~~vl~ksD---G~~~Y~~~-------Di----A~~~~r~ 335 (582)
+ ..|++++.+.+ .-..-|+ -|+++|.....++..-| |+..|.+. |+ +-.-||+
T Consensus 145 i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~ 224 (510)
T PRK00750 145 ILTALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKV 224 (510)
T ss_pred HHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCC
Confidence 6 44666665542 1112222 34566765433433333 44567542 22 2356777
Q ss_pred hcCC-----ceEEEEEecCcch-hHHHHHHHHH-HHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHH
Q psy5226 336 ERGF-----IQAINIQGDDHQG-TITRVKAGLQ-AINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKW 408 (582)
Q Consensus 336 ~~~~-----d~~i~V~g~dh~~-~~~~~~~~l~-~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~ 408 (582)
+|+. +-.+-+.|.||.. .+.....+++ .+ |+++| ..++++|+.+. +|+ |||||+||+|++.|+++.
T Consensus 225 dW~~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~il--g~~~P--~~~~y~~v~~~-~G~--KMSKSkGN~i~~~d~l~~ 297 (510)
T PRK00750 225 DWPMRWAALGVDFEPFGKDHASASYDTSKKIAREIL--GGEPP--EPFVYELFLDK-KGE--KISKSKGNVITIEDWLEY 297 (510)
T ss_pred CcHHHHHHcCCCEEeeCcccCcchHHHHHHHHHHHc--CCCCC--eeeeeeeEEeC-CCC--cccccCCCccCHHHHHHH
Confidence 6533 3445689999999 8888888887 88 99876 45789999763 476 999999999999999999
Q ss_pred HHhhhhcCCChhhHhhhhcchhhHHHHHh-ccCCCCcccccH
Q psy5226 409 LSKTESKNDSIEFREDLIRGRDLMRFFLI-SRKSDTDFIFDI 449 (582)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~airy~~l-~~~~~~~~~F~~ 449 (582)
+ +++++|||++ +.++.++++|++
T Consensus 298 ~------------------~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 298 A------------------PPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred C------------------CHHHHHHHHHhCCCCCCCCcccH
Confidence 8 9999997766 567789999998
No 41
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.89 E-value=3.9e-22 Score=208.10 Aligned_cols=262 Identities=23% Similarity=0.248 Sum_probs=163.9
Q ss_pred EEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy5226 124 KILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYN 203 (582)
Q Consensus 124 ~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 203 (582)
+..|.-.-|||+|++||||+|+.++.|+++|+++..||+|..+..++|+|+.+..-+. +. .+.+ +.
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~----k~---lg~~---~~---- 67 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVE----KE---LGIS---GK---- 67 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHH----HH---hCCC---CC----
Confidence 3566677899999999999999999999999999999999999999999998754332 10 0100 00
Q ss_pred cccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc--cccccccccccCCChHH
Q psy5226 204 GEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKF--DNYCLESSLYKTGKVSL 281 (582)
Q Consensus 204 g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~f--D~~~~ES~~~~~~~i~~ 281 (582)
..+ +.. +..+.-+.++++ ++++.+.|.+++++|||.+ |.+...++-.+...+.+
T Consensus 68 -~~~--------~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~ 123 (338)
T cd00818 68 -KDI--------EKM--------------GIAEFNAKCREF-ALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWW 123 (338)
T ss_pred -cch--------hhc--------------CHHHHHHHHHHH-HHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHH
Confidence 000 000 000111223333 4888899999999999955 44443333333467899
Q ss_pred HHHHHHHcCCeeeeCCcEEE------------EeccCCC--------------------------Ccce-----------
Q psy5226 282 VTKLLIQSGKTYYKDGALWL------------RTTDYGD--------------------------DKDR----------- 312 (582)
Q Consensus 282 ~i~~L~~~g~~~~~~Ga~~~------------~~~~~g~--------------------------~~~~----------- 312 (582)
++.+|.++|++|+.++.+++ +++++.+ .+|.
T Consensus 124 ~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip 203 (338)
T cd00818 124 VFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTP 203 (338)
T ss_pred HHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCce
Confidence 99999999999987664432 2222100 0011
Q ss_pred -EE--EccC--------CccccchhhH-----HHHHh-----hhhcCCceEEEEEecCcc-hhHHHHHH-HHHHHHcCCC
Q psy5226 313 -VV--RKSN--------GDFTYFVSDI-----AYHIF-----KWERGFIQAINIQGDDHQ-GTITRVKA-GLQAINIGIP 369 (582)
Q Consensus 313 -vl--~ksD--------G~~~Y~~~Di-----A~~~~-----r~~~~~d~~i~V~g~dh~-~~~~~~~~-~l~~l~~G~~ 369 (582)
.+ ..++ +...|..=|- +...+ .++.-...-+.+.|.|+. +|+..+.- ++... |..
T Consensus 204 ~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~--~~~ 281 (338)
T cd00818 204 IPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF--GKA 281 (338)
T ss_pred eeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHHhc--CCC
Confidence 11 1122 2233332221 11111 011101112557788887 35544432 22233 554
Q ss_pred CCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccC-CCCcccc
Q psy5226 370 NDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRK-SDTDFIF 447 (582)
Q Consensus 370 ~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~-~~~~~~F 447 (582)
+. ..+..+|++ +..+|+ |||||+||+|+++|+++++ |++++||++++.. ..+|..|
T Consensus 282 p~-~~~~~hg~~-~~~~g~--KmSKS~gn~i~~~~~~~~~------------------~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 282 PY-KNVIVHGFV-LDEDGR--KMSKSLGNYVDPQEVVDKY------------------GADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred cc-ceEEEEeeE-ECCCCC--CCCCCCCCcCCHHHHHHHc------------------CcHHHHHHHHhCCCccCCCCC
Confidence 44 367777887 345788 9999999999999999999 9999999999887 4777765
No 42
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.89 E-value=9.4e-21 Score=220.53 Aligned_cols=170 Identities=20% Similarity=0.159 Sum_probs=115.0
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDL 451 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~ 451 (582)
..+..+||+. ..+|+ |||||+||+|++.|+++++ |.|++||++++..+ .+|++||++.
T Consensus 510 k~v~~hG~v~-d~~G~--KMSKS~GN~i~p~~~i~~y------------------gaDalR~~l~~~~~~~~d~~f~~~~ 568 (861)
T TIGR00422 510 KEVYIHGLVR-DEQGR--KMSKSLGNVIDPLDVIEKY------------------GADALRFTLASLVTPGDDINFDWKR 568 (861)
T ss_pred heEEEeeEEE-CCCCC--CCCcCCCCCCCHHHHHHHh------------------ChHHHHHHHHhCCCCCCCceecHHH
Confidence 4777888884 34687 9999999999999999999 99999999998876 8999999999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHH
Q psy5226 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRD 531 (582)
Q Consensus 452 ~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~ 531 (582)
+.+.. |..+-+-+ ..|.....-+.. ...+ ... ..+ .+.++-++..+....+.+.+++++++.+.+++.+++
T Consensus 569 ~~~~~--~~~nkl~N-~~rf~~~~~~~~-~~~~---~~~-~~~-~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~ 639 (861)
T TIGR00422 569 VESAR--NFLNKLWN-ASRFVLMNLSDD-LELS---GGE-EKL-SLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYE 639 (861)
T ss_pred HHHHH--HHHHHHHH-HHHHHHhccccc-cccc---ccc-ccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 87632 23333333 234443321111 1111 000 112 345666888999999999999999999999999999
Q ss_pred HH--HHHHhhhhcccc--cCCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 532 LA--KELHGYYNTERI--LVKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 532 La--~~~n~fy~~~~v--l~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
+. ...|.|++.++- ...+. ..+.........+|+..+.||-
T Consensus 640 f~~~~~~n~Yie~~k~~~~~~~~---~~~~~~~~~l~~~l~~~~~lL~ 684 (861)
T TIGR00422 640 FIWNDFCDWYIELVKYRLYNGNE---AEKKAARDTLYYVLDKALRLLH 684 (861)
T ss_pred HHHHHHHHHHHHHhHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHh
Confidence 96 566667665532 22221 1233344445556666666653
No 43
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.89 E-value=1.1e-22 Score=220.11 Aligned_cols=265 Identities=15% Similarity=0.205 Sum_probs=182.6
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
++++|+ |+-.|+|++||||+|..+.+|+++|.+|.+|++|..++..|||.. .+.. |..+......|
T Consensus 18 ~~~~~~-tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~------------lRKv-p~~~p~~~~~y 83 (515)
T TIGR00467 18 NLYTVA-SGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP------------LRKV-YPFLPEELETY 83 (515)
T ss_pred CeEEEe-cCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc------------cccc-cccccHHHHHh
Confidence 357774 555699999999999999999999999999999999999999863 1111 22111011234
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
.|.++.. .+||.- .+..+ .+++...|.+.++.|||+++.++ -++.|.+|...+.
T Consensus 84 lG~Pl~~----------------------vpdp~g--~~~s~-~~h~~~~~~~~l~~~gi~~e~~s-~te~Y~sG~~~~~ 137 (515)
T TIGR00467 84 LGMPLTR----------------------IPDPEG--CKTSY-AEHFLIPFLESLPVLGINPEFIR-ASKQYTSGLYASQ 137 (515)
T ss_pred CCCccee----------------------cCCCCC--CcHHH-HHHHHHHHHHHHHHcCCeEEEEE-HHHhhhcCChHHH
Confidence 4555432 233310 11112 38899999999999999998765 5779999888777
Q ss_pred HHHHHHc-CCee----e-----eCCcEE---EEeccCCCCcceEEEccC--Cccccch-------hhH----HHHHhhhh
Q psy5226 283 TKLLIQS-GKTY----Y-----KDGALW---LRTTDYGDDKDRVVRKSN--GDFTYFV-------SDI----AYHIFKWE 336 (582)
Q Consensus 283 i~~L~~~-g~~~----~-----~~Ga~~---~~~~~~g~~~~~vl~ksD--G~~~Y~~-------~Di----A~~~~r~~ 336 (582)
+....++ .-+. + ....++ .-|+++|.....++ .-| .+..|.+ .|+ +-.-||++
T Consensus 138 i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~Wkvd 216 (515)
T TIGR00467 138 IKIALDHRKEISEILNEYRTSKLEENWYPISVFCENCGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVD 216 (515)
T ss_pred HHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCCcCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCC
Confidence 7554443 2221 1 111121 23456675433222 333 3455654 233 24567777
Q ss_pred cCCceEE-----EEEecCcch----hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHH
Q psy5226 337 RGFIQAI-----NIQGDDHQG----TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIK 407 (582)
Q Consensus 337 ~~~d~~i-----~V~g~dh~~----~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~ 407 (582)
|+..|.+ =-+|+||+. |......+.+++ |..+| ..+.++|+.+..+|+ |||||+||+++++|+++
T Consensus 217 W~~RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l--~~~~P--~~~~ye~v~L~~~g~--KMSKS~Gn~itl~dll~ 290 (515)
T TIGR00467 217 WPARWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIF--QYSPP--VTVQYEWISLKGKGG--KMSSSKGDVISVKDVLE 290 (515)
T ss_pred cHhhHhhhCcccccCCCCccCccCCchhHHHHHHHHh--CCCCC--cCcEEEEEEEcCCCc--cccCCCCCCccHHHHHH
Confidence 6544432 248999996 888888888899 88766 234588887754455 99999999999999999
Q ss_pred HHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHH
Q psy5226 408 WLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLA 452 (582)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~ 452 (582)
.+ +++++||++++.++.++++||++.+
T Consensus 291 ~~------------------~pdalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 291 VY------------------TPEITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred Hc------------------CHHHHHHHHhccCCCCCCcCCHHHH
Confidence 98 9999999999999999999999966
No 44
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=2.8e-20 Score=216.47 Aligned_cols=167 Identities=20% Similarity=0.229 Sum_probs=114.7
Q ss_pred cEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHHH
Q psy5226 374 NYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDLA 452 (582)
Q Consensus 374 ~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~ 452 (582)
.+..||++. ..+|+ |||||+||+|++.|+++++ |.|++||++++. .+.+|++||++.+
T Consensus 506 ~v~~hG~v~-d~~G~--KMSKSlGNvIdP~dvi~~y------------------GaDalR~~ll~~~~~~~Di~fs~~~l 564 (874)
T PRK05729 506 DVYIHGLVR-DEQGR--KMSKSKGNVIDPLDLIDKY------------------GADALRFTLAALASPGRDIRFDEERV 564 (874)
T ss_pred heEEeeeEE-CCCCC--CcccCCCCCCCHHHHHHHh------------------ChHHHHHHHHhCCCCCCCceeCHHHH
Confidence 677788874 34787 9999999999999999999 999999999987 5689999999998
Q ss_pred hhhcCCCchHHHHHHHHHHHHHH-HhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHH
Q psy5226 453 LKRSDENPVYYIQYAHARIFSLL-NQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRD 531 (582)
Q Consensus 453 ~~~~~~n~~~ylqYa~aR~~sil-rk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~ 531 (582)
.+. . |..+-+-+ .+|..++. .+......+ . ...+ .+.++-++..+.++.+.+.+++++++++.+++.+++
T Consensus 565 ~~~-~-~~~nkl~N-~~Rf~~~~~~~~~~~~~~---~--~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~ 635 (874)
T PRK05729 565 EGY-R-NFANKLWN-ASRFVLMNLEGADVGELP---D--PEEL-SLADRWILSRLNRTVAEVTEALDKYRFDEAARALYE 635 (874)
T ss_pred HHH-H-HHHHHHHH-HHHHHHHhcccCCccccc---c--cccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 663 2 33334433 45665542 222111111 0 1112 455677899999999999999999999999999999
Q ss_pred HH-HHHHhhh-hccc-ccCCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 532 LA-KELHGYY-NTER-ILVKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 532 La-~~~n~fy-~~~~-vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
++ ..|..+| +..+ .+- +.+ +-........+|+..+.||-
T Consensus 636 f~~~~~~~~Yle~~k~~l~-~~~----~~~~~~~l~~~l~~~~~lL~ 677 (874)
T PRK05729 636 FIWNEFCDWYLELAKPVLQ-EAA----KRATRATLAYVLEQILRLLH 677 (874)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhH----HHHHHHHHHHHHHHHHHHHc
Confidence 98 4555555 4332 221 111 22334445566666666653
No 45
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.88 E-value=1.5e-21 Score=207.01 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=97.0
Q ss_pred EEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy5226 124 KILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYN 203 (582)
Q Consensus 124 ~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 203 (582)
+++|...-|||+|++||||+|+.+++|+++|++|..|++|..+...+|+|+.+-..+.. ..+..
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k-------~~~~~--------- 65 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK-------KLGIE--------- 65 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHH-------Hhccc---------
Confidence 46788899999999999999999999999999999999999999999999877543321 00000
Q ss_pred cccHHHHHHHHHHHcCccchhhhhHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHhhhCCccc--ccccccccccCCChH
Q psy5226 204 GEYITDIAKCFLKKKKIISKDRSINIIANGKIN-DLKAIRDFSVAYLRREQDIDLKIFGVKFD--NYCLESSLYKTGKVS 280 (582)
Q Consensus 204 g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~-~~~~~~~~~~~~~~~~~~~~~~~lgI~fD--~~~~ES~~~~~~~i~ 280 (582)
+..+ +.-+++ ..+.++++ ++++.+.+++++++|||.+| .+..+++..+...++
T Consensus 66 ~~~~-----------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~ 121 (382)
T cd00817 66 GKTR-----------------------HDLGREEFLEKCWEW-KEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQ 121 (382)
T ss_pred ccch-----------------------hcCCHHHHHHHHHHH-HHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHH
Confidence 0000 001111 11223333 47888999999999999998 555555443456789
Q ss_pred HHHHHHHHcCCeeeeC
Q psy5226 281 LVTKLLIQSGKTYYKD 296 (582)
Q Consensus 281 ~~i~~L~~~g~~~~~~ 296 (582)
+++.+|.++|++|+..
T Consensus 122 ~~f~~L~~~G~iy~~~ 137 (382)
T cd00817 122 EAFVRLYEKGLIYRDN 137 (382)
T ss_pred HHHHHHHHCCCEEeee
Confidence 9999999999999743
No 46
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.3e-19 Score=198.88 Aligned_cols=171 Identities=21% Similarity=0.265 Sum_probs=121.4
Q ss_pred CCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccH
Q psy5226 371 DYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDI 449 (582)
Q Consensus 371 ~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~ 449 (582)
|...+..+|+| ..++|+ |||||+||+|.+.|+++++ |.||+||++.+. ++++|+.||+
T Consensus 508 PFk~V~ihGLV-rDe~G~--KMSKS~GNvIDP~d~I~~y------------------GaDAlRf~la~~~~~G~Di~~~~ 566 (877)
T COG0525 508 PFKDVYIHGLV-RDEQGR--KMSKSKGNVIDPLDVIDKY------------------GADALRFTLASLASPGRDINFDE 566 (877)
T ss_pred CccEEEEeeeE-EcCCCC--CCcccCCCcCCHHHHHHHh------------------ChHHHHHHHHhccCCCcccCcCH
Confidence 33477788888 467788 9999999999999999999 999999999987 7799999999
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHH-HhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHH
Q psy5226 450 DLALKRSDENPVYYIQYAHARIFSLL-NQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFY 528 (582)
Q Consensus 450 ~~~~~~~~~n~~~ylqYa~aR~~sil-rk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~y 528 (582)
+++.+- -|.++-+=+ .+|...+- .+...... +.... .+.++=++..+.+.-+.+.+++++++...+++.
T Consensus 567 ~~~~~~--rnF~nKlWN-a~Rfv~~~~~~~~~~~~------~~~~~-~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ 636 (877)
T COG0525 567 KRVEGY--RNFLNKLWN-ATRFVLMNLDDLGPDDL------DLLAL-SLADRWILSRLNETVKEVTEALDNYRFDEAARA 636 (877)
T ss_pred HHHHHH--HHHHHHHHh-HHHHHHhcccccCcccc------ccccc-chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 998762 233333333 24554442 22111111 10011 355666888899999999999999999999999
Q ss_pred HHHHH-HHHHhhhhc-cc-ccCCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 529 LRDLA-KELHGYYNT-ER-ILVKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 529 l~~La-~~~n~fy~~-~~-vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
||+.. ..|-.+|=+ .+ .+-.+ ...+.........||.+.|.||-
T Consensus 637 ly~F~W~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLh 683 (877)
T COG0525 637 LYEFIWNDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLH 683 (877)
T ss_pred HHHHhHHHHHHHHHHHhhhhhcCc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99965 666666643 22 33222 33344677777888999999884
No 47
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.86 E-value=2e-21 Score=173.16 Aligned_cols=119 Identities=47% Similarity=0.700 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhcCCCC--CcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhh
Q psy5226 464 IQYAHARIFSLLNQWGGDK--KSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYN 541 (582)
Q Consensus 464 lqYa~aR~~silrk~~~~~--~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~ 541 (582)
+||+|+|++||++|++..+ .+.....+...+.++.|++|+..+.+||+++..++.+.+|+.+|+|+++|+..||+||+
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHc
Confidence 5899999999999987422 22011234445668999999999999999999999999999999999999999999999
Q ss_pred cccccCCC-hhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 542 TERILVKN-ITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 542 ~~~vl~~~-~~~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
+++|++++ ++.+.+||+|+.++++++.+++++|||+||++|
T Consensus 81 ~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~~~m 122 (122)
T smart00836 81 KCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISAPERM 122 (122)
T ss_pred cCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 99999876 788999999999999999999999999999999
No 48
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.85 E-value=1.1e-18 Score=205.11 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=105.0
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDL 451 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~ 451 (582)
..+..+||+. ..+|+ |||||+||+|++.|+++++ |.|++||++++. ...+|++|+++.
T Consensus 523 k~V~~hG~v~-d~~G~--KMSKSkGNvIdP~dvIe~y------------------GaDalR~~L~~~~~~g~D~~fs~~~ 581 (1052)
T PRK14900 523 RTVYLHPMVR-DEKGQ--KMSKTKGNVIDPLVITEQY------------------GADALRFTLAALTAQGRDIKLAKER 581 (1052)
T ss_pred ceeEecccEE-CCCCC--CccCCCCCCCCHHHHHHHh------------------CcHHHHHHHHhcCCCCCCCcccHHH
Confidence 3677888884 34677 9999999999999999999 999999999986 468999999999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHH-hcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHH
Q psy5226 452 ALKRSDENPVYYIQYAHARIFSLLN-QWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLR 530 (582)
Q Consensus 452 ~~~~~~~n~~~ylqYa~aR~~silr-k~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~ 530 (582)
+.. .+ +..+-+.++ +|...+.. .+...... . . ...+ .+.++.++..+......+.+++++++.+.+++.++
T Consensus 582 l~~-~~-~f~nkl~N~-~R~~~~~~~~~~~~~~~-~-~--~~~~-~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~ 653 (1052)
T PRK14900 582 IEG-YR-AFANKLWNA-SRFALMNLSGYQERGED-P-A--RLAR-TPADRWILARLQRAVNETVEALEAFRFNDAANAVY 653 (1052)
T ss_pred HHH-HH-HHHHHHHHH-HHHHHHhhhccCccccc-c-c--cccc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 854 22 233344443 56654432 22111111 0 0 0112 34566688899999999999999999999999999
Q ss_pred HHH--HHHHhhhhccc
Q psy5226 531 DLA--KELHGYYNTER 544 (582)
Q Consensus 531 ~La--~~~n~fy~~~~ 544 (582)
++. ...|.|++.++
T Consensus 654 ~f~~~~~~n~Yie~~k 669 (1052)
T PRK14900 654 AFVWHELCDWYIELAK 669 (1052)
T ss_pred HHHHHhhhHHHHHhcc
Confidence 986 57788888764
No 49
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.84 E-value=3.2e-20 Score=170.13 Aligned_cols=143 Identities=27% Similarity=0.314 Sum_probs=111.7
Q ss_pred EEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCccc
Q psy5226 127 IEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEY 206 (582)
Q Consensus 127 Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 206 (582)
|++|+|||+|++||||+|+++++|+++|+||..|++|..+++++|||+|++..+..
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~------------------------ 56 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK------------------------ 56 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh------------------------
Confidence 57999999999999999999999999999999999999999999999998754320
Q ss_pred HHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHH
Q psy5226 207 ITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLL 286 (582)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L 286 (582)
...+ |+.++ +.+.+.|+++|+
T Consensus 57 ------------------------~~~~---~~~~~----~~~~~~~~~~~~---------------------------- 77 (143)
T cd00802 57 ------------------------KGEN---AKAFV----ERWIERIKEDVE---------------------------- 77 (143)
T ss_pred ------------------------cCCC---HHHHH----HHHHHHHHHHHH----------------------------
Confidence 0112 34444 444555566555
Q ss_pred HHcCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHc
Q psy5226 287 IQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINI 366 (582)
Q Consensus 287 ~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~ 366 (582)
|.+.+.|...++... . ..|++.|.||..|+.+...+++++
T Consensus 78 ------------------------------------y~~~~~a~~~~~~~~-~-~~i~~~G~Dq~~h~~~~~~i~~~~-- 117 (143)
T cd00802 78 ------------------------------------YMFLQAADFLLLYET-E-CDIHLGGSDQLGHIELGLELLKKA-- 117 (143)
T ss_pred ------------------------------------HHHHHHHHHHHHhhC-C-cEEEEechhHHHHHHHHHHHHHHh--
Confidence 777777766665542 2 688999999999999999999998
Q ss_pred CCCCCCCcEEEEEEEEEeeCCeeeecccCC
Q psy5226 367 GIPNDYPNYILHKMVTVIKNGKEVKISKRS 396 (582)
Q Consensus 367 G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~ 396 (582)
|...+ ..++|++++.. .+|+ |||||+
T Consensus 118 ~~~~~-p~~~~~~~l~~-~~g~--KmSks~ 143 (143)
T cd00802 118 GGPAR-PFGLTFGRVMG-ADGT--KMSKSK 143 (143)
T ss_pred CCCCC-ceEEEeCCeEC-CCCC--cCCCCC
Confidence 86533 47888998855 3556 999995
No 50
>PLN02943 aminoacyl-tRNA ligase
Probab=99.83 E-value=4.6e-18 Score=198.46 Aligned_cols=173 Identities=20% Similarity=0.189 Sum_probs=112.8
Q ss_pred cEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHh
Q psy5226 374 NYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLAL 453 (582)
Q Consensus 374 ~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~ 453 (582)
.+..||++. ..+|+ |||||+||+|++.|+++++ |+|++||++++..+++|++|+++.+.
T Consensus 569 ~v~~hg~v~-~~~G~--KMSKS~GN~i~p~~~i~~y------------------gaDalR~~l~~~~~~~d~~fs~~~l~ 627 (958)
T PLN02943 569 YVYLHGLIR-DSQGR--KMSKTLGNVIDPLDTIKEF------------------GTDALRFTLALGTAGQDLNLSTERLT 627 (958)
T ss_pred eEEEeccEE-CCCCC--cccCcCCCCCCHHHHHHhc------------------CChHHHHHHHhCCCCCCccccHHHHH
Confidence 566677773 34787 9999999999999999999 99999999999888999999999986
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHhcCCCCCc-----c----ccc-ccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchH
Q psy5226 454 KRSDENPVYYIQYAHARIFSLLNQWGGDKKS-----L----ISI-KDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPH 523 (582)
Q Consensus 454 ~~~~~n~~~ylqYa~aR~~silrk~~~~~~~-----~----~~~-~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~ 523 (582)
. +.+..+-+.++. |-. ++.......+ + .+. .....+ ...++-++..+.+..+.+.+++++++.+
T Consensus 628 ~--~~~~~~kl~N~~-rf~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~D~wilskl~~~i~~v~~~~e~y~f~ 701 (958)
T PLN02943 628 S--NKAFTNKLWNAG-KFV--LQNLPSQSDTSAWEHILACKFDKEESLLSL-PLPECWVVSKLHELIDSVTTSYDKYFFG 701 (958)
T ss_pred H--HHHHHHHHHHHH-HHH--HhccccccccccccccccccCCcccccccc-CHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5 222222333322 211 1111100000 0 000 000112 3445668888999999999999999999
Q ss_pred HHHHHHHHH--HHHHHhhhhcccc-c-CCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 524 YVAFYLRDL--AKELHGYYNTERI-L-VKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 524 ~l~~yl~~L--a~~~n~fy~~~~v-l-~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
.+++.++++ ....|.|++.++- + .++.. ..+.........+|+..+.||-
T Consensus 702 ~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~--~~~~~a~~vL~~vl~~ll~LL~ 755 (958)
T PLN02943 702 DVGREIYDFFWSDFADWYIEASKTRLYHSGDN--SALSRAQAVLLYVFENILKLLH 755 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhccCCch--HHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 4677777776642 2 22211 1133444455566666666663
No 51
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.83 E-value=7.3e-20 Score=197.71 Aligned_cols=193 Identities=22% Similarity=0.236 Sum_probs=138.3
Q ss_pred HHHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeee----------------e-------CCc------
Q psy5226 249 LRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYY----------------K-------DGA------ 298 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~----------------~-------~Ga------ 298 (582)
+.+.+.++|++||+.+|. -+..|+- .+...++++.|.++|.+|. . +|.
T Consensus 52 ~~~~i~~~L~wlGl~~de~~~~QS~r--~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~ 129 (470)
T TIGR00464 52 AEEAILEGLKWLGISWDEGPYYQSQR--LDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHE 129 (470)
T ss_pred HHHHHHHHHHHCCCCCCCCeeehhCC--HHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCH
Confidence 345567889999999982 2233432 2456889999999999983 0 111
Q ss_pred ------------EEEE--eccC----------C-------CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEe
Q psy5226 299 ------------LWLR--TTDY----------G-------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQG 347 (582)
Q Consensus 299 ------------~~~~--~~~~----------g-------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g 347 (582)
.+++ .++. | ...|.||.|+||+++|. +|++.+++..+++++| +|
T Consensus 130 ~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~---~A~~vdD~~~~ithvI--rG 204 (470)
T TIGR00464 130 EEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILRSDGSPTYN---FAVVVDDYLMKITHVI--RG 204 (470)
T ss_pred HHHHhHHhcCCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEecCCCcccc---cHHHHHHHhCCCCEEE--EC
Confidence 1122 2110 1 11367999999999999 8999999988999995 99
Q ss_pred cCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh---h---hhc-CCChh
Q psy5226 348 DDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK---T---ESK-NDSIE 420 (582)
Q Consensus 348 ~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~---~~~-~~~~~ 420 (582)
.||..++.++..+++++ |++.+ .+.|++++ ++.+|+ |||||+| .++++++++++.. + ... ..+..
T Consensus 205 ~d~~~~t~~~~~l~~aL--g~~~p--~~~H~p~l-~~~~g~--kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~ 276 (470)
T TIGR00464 205 EDHISNTPKQILIYQAL--GWKIP--VFAHLPMI-LDEDGK--KLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPP 276 (470)
T ss_pred chhhcCHHHHHHHHHHc--CCCCC--eEEEEeee-ecCCCc--cccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCC
Confidence 99999999999999999 98655 78888884 556777 9999999 6899999988521 1 111 11111
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSD 457 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~ 457 (582)
...++.-..++++||+++..+.+++.|||+++.. .|
T Consensus 277 ~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~~-~N 312 (470)
T TIGR00464 277 DDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQW-LN 312 (470)
T ss_pred CccccCCHHHHHHhcCcccCCCCCCeecHHHHHH-HH
Confidence 0111112458999999999999999999999544 55
No 52
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.83 E-value=4.5e-18 Score=198.37 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=117.4
Q ss_pred EEEEecCcc-hhHHHHH-HHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRVK-AGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~~-~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+++.|.||+ +||..+. .++... |..|+ ..+..+||+. ..+|+ |||||+||+|++.|+++++
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~--~~~P~-k~v~~hG~vl-~~~G~--KMSKSkGNvI~p~d~i~~y----------- 629 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALF--GQAPY-KNVITHGFTL-DEKGR--KMSKSLGNVVDPLKVINKY----------- 629 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHc--CCCCh-HhhEecceEE-CCCCC--CcCCCCCCCCCHHHHHHHc-----------
Confidence 455566665 3443332 222223 65554 4777788884 34677 9999999999999999999
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHH--HHHHhcCCCCCcccccccCCCCCCHH
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIF--SLLNQWGGDKKSLISIKDLSSLNTEK 498 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~--silrk~~~~~~~~~~~~d~~~l~~~~ 498 (582)
|.|++||++++..+.+|++|+++.+.+ ..++..+.+.++..++. +.+.++...... .....+ .+.
T Consensus 630 -------GaDalR~~ll~~~~~~D~~fs~~~l~~-~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~----~~~~~l-~~~ 696 (861)
T TIGR00392 630 -------GADILRLYVASSDPWEDLRFSDEILKQ-VVEKYRKIRWNTYRFLLTYANLDKFDPLFNS----VAVEKF-PEE 696 (861)
T ss_pred -------CHHHHHHHHHhCCCCCCceECHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCccccc----cccccC-CHH
Confidence 999999999999889999999999865 33222333333334443 444443211100 001112 456
Q ss_pred HHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHH-HHh-hhhcc
Q psy5226 499 ELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKE-LHG-YYNTE 543 (582)
Q Consensus 499 e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~-~n~-fy~~~ 543 (582)
++.|+..+.++.+.+.+++++++++.+++++++++.. ++. |++.+
T Consensus 697 d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~ 743 (861)
T TIGR00392 697 DRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRII 743 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7779999999999999999999999999999998876 544 44544
No 53
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.82 E-value=2.1e-20 Score=191.20 Aligned_cols=268 Identities=16% Similarity=0.217 Sum_probs=147.3
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCC-CC
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWP-DT 200 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~-~~ 200 (582)
+..+++ -|+-.|+|..||||+|..+.++.++|.|+.+|++|..++..+|... ++. .|..+..+ ..
T Consensus 22 ~~~~v~-~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~------------lRK-vP~~~p~~~~~ 87 (360)
T PF01921_consen 22 KEPYVF-ASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP------------LRK-VPPNVPNPELE 87 (360)
T ss_dssp -SEEEE-EEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB------------------TTS-CC-CC
T ss_pred CccEEE-ecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc------------ccC-CCCCCChHHHH
Confidence 455666 7899999999999999999999999999999999999999999875 111 12222222 34
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChH
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVS 280 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~ 280 (582)
.|.|.++. ..+||. ..+..+ .+++...|.+.|+.|||+++.++ -++.|++|...
T Consensus 88 ~ylg~Plt----------------------~VPdP~--G~~~Sy-aeH~~~~~~~~L~~~gie~e~~s-~te~Y~sG~y~ 141 (360)
T PF01921_consen 88 KYLGKPLT----------------------RVPDPF--GCHESY-AEHFNAPFEEFLDEFGIEYEFIS-QTEMYRSGRYD 141 (360)
T ss_dssp CCTTSBTT----------------------TSB-TT--SSSSCH-HHHHHHHHHHHHHTTT---EEEE-CCCCCCTTTTH
T ss_pred HhcCCccc----------------------cCCCCC--CCCccH-HHHHHHHHHHHHHHcCCceEEEe-HHHhhhCCchH
Confidence 56777764 223331 001111 28888999999999999998766 56799999877
Q ss_pred HHHHH-HHHcCCeee---------eCCcE---EEEeccCCCCcceEEEcc---CCccccchhhHH------------HHH
Q psy5226 281 LVTKL-LIQSGKTYY---------KDGAL---WLRTTDYGDDKDRVVRKS---NGDFTYFVSDIA------------YHI 332 (582)
Q Consensus 281 ~~i~~-L~~~g~~~~---------~~Ga~---~~~~~~~g~~~~~vl~ks---DG~~~Y~~~DiA------------~~~ 332 (582)
+.+.. |++..-+.+ ....+ ...|+++|.-....++.- .++.+|.++.++ ..-
T Consensus 142 ~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~ 221 (360)
T PF01921_consen 142 EQIRTALENRDEIREILNEYRGRERPETYSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQ 221 (360)
T ss_dssp HHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-
T ss_pred HHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCccccc
Confidence 76644 333322211 11222 123455665212223332 356677763333 245
Q ss_pred hhhhcCC-----ceEEEEEecCcch---hHHHHHHHH-HHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHH
Q psy5226 333 FKWERGF-----IQAINIQGDDHQG---TITRVKAGL-QAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIR 403 (582)
Q Consensus 333 ~r~~~~~-----d~~i~V~g~dh~~---~~~~~~~~l-~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~ 403 (582)
||++|.. +-.+=-.|.||.. -+.....+. +.+ |+++| ..+.|+|+.+ ++|+ |||||+||+++++
T Consensus 222 WkvDW~mRW~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~--g~~pP--~~~~YE~~~~-~g~~--kmSsSkG~~~t~~ 294 (360)
T PF01921_consen 222 WKVDWPMRWAALGVDFEPFGKDHASPGGSYDTSKRIAREIL--GYEPP--VPFPYEFFLD-KGGG--KMSSSKGNGITPE 294 (360)
T ss_dssp HHHHHHHHHHHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC---------EEEEE--EEE-S----------------HH
T ss_pred CCCcChhhhhhcCceeccCCCccCCCCCChhhHHHHHHHHh--CCCCC--CCCCeeEEEe-CCCc--ccccCCCCccCHH
Confidence 6766432 3233457999986 555555555 778 99877 6778999966 3444 9999999999999
Q ss_pred HHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHH-HHhh
Q psy5226 404 NLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDID-LALK 454 (582)
Q Consensus 404 dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~-~~~~ 454 (582)
|+|+-+ .++++||++++.+|.+..+|+++ .+.+
T Consensus 295 e~L~~~------------------~PE~lr~l~~~~~P~~~~~~~~~~~i~~ 328 (360)
T PF01921_consen 295 EWLEYA------------------PPESLRYLMARTKPNKAKDFSFDLVIPR 328 (360)
T ss_dssp HHHTTS-------------------HHHHHHHHHCS-TTS-EEE--STTHHH
T ss_pred HHHHhc------------------CHHHHHHHHcccCCCcceEeccCcchHH
Confidence 999988 99999999999999999999988 5544
No 54
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=1.8e-17 Score=194.41 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=118.7
Q ss_pred CCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcc
Q psy5226 367 GIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDF 445 (582)
Q Consensus 367 G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~ 445 (582)
|..+. ..+..+||+. ..+|+ |||||+||+|++.|+++++ |.|++||++++..+ .+|+
T Consensus 572 ~~~pf-k~v~~hG~Vl-d~~G~--KMSKSlGNvIdP~dli~~y------------------GaDalR~~lls~~~~~~D~ 629 (975)
T PRK06039 572 DRPPY-KNVLVHGHVL-DEDGQ--KMSKSLGNYVDPFEVFDKY------------------GADALRWYLLSSSAPWEDL 629 (975)
T ss_pred CCCcc-cEEEEeeeEE-CCCCC--CcCCCCCCcCCHHHHHHHh------------------ChHHHHHHHHhCCCCCCCc
Confidence 44443 4788889984 45788 9999999999999999999 99999999999875 9999
Q ss_pred cccHHHHhhhcCCCchHHHHHHHHHHHHHHH--hcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchH
Q psy5226 446 IFDIDLALKRSDENPVYYIQYAHARIFSLLN--QWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPH 523 (582)
Q Consensus 446 ~F~~~~~~~~~~~n~~~ylqYa~aR~~silr--k~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~ 523 (582)
+||++.+.+..+... .-+.+++.++....+ ....... ......+ ++.++.++..+..+...+.+++++++++
T Consensus 630 ~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~~~~~~~~~----~~~~~~~-~~~D~wils~l~~li~~v~~a~e~y~~~ 703 (975)
T PRK06039 630 RFSEDGVREVVRKFL-LTLWNVYSFFVLYANLDGFDYPPA----EDEVDSL-NELDRWILSRLNSLVKEVTEALDNYDIT 703 (975)
T ss_pred eechhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCcccc----ccccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 999999655343322 223334333321111 1100100 0011122 4567779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhc-c--cccCCChhhhHHHHHHHHHHHHHHHHHHHhc
Q psy5226 524 YVAFYLRDLAKELHGYYNT-E--RILVKNITIKMARLALIYSIGQVLNNGLKLI 574 (582)
Q Consensus 524 ~l~~yl~~La~~~n~fy~~-~--~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lL 574 (582)
.+++.+++++..++.+|-+ + +...... ...|.........+|...+.+|
T Consensus 704 ~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~--~~~~~~a~~~L~~~L~~l~~lL 755 (975)
T PRK06039 704 KAARAIRDFVDDLSNWYIRRSRRRFWKEED--DPDKLAAYATLYTVLETLSRLA 755 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887733 3 2332211 1123334444455555555554
No 55
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-19 Score=190.07 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=185.1
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCC---
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPD--- 199 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~--- 199 (582)
..++| -|+..|+|..|||++|..+.||+++|.|+.+|++|..++..||+.. . +. .+.. +|.
T Consensus 19 ~~~~v-~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~---------l---Rk-vp~~--lp~~~~ 82 (521)
T COG1384 19 DEYVV-ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP---------L---RK-VPRN--LPDPEE 82 (521)
T ss_pred CcEEE-ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc---------c---cc-CCCC--CCChHH
Confidence 55777 5899999999999999999999999999999999999999999874 1 11 1221 121
Q ss_pred -CCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCC
Q psy5226 200 -TAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGK 278 (582)
Q Consensus 200 -~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~ 278 (582)
..|.|.+++ +.+||. ..+-.+ .+++.+.|.+.++.|||.++.++ .|++|..|.
T Consensus 83 ~e~Ylg~Plt----------------------~IPdP~--G~~~Sy-a~hf~~~f~~~l~~~Gi~~E~~s-~se~Yk~G~ 136 (521)
T COG1384 83 LEQYLGMPLT----------------------EIPDPF--GCCDSY-AEHFLRPFEEFLDEFGIEVEFVS-ATELYKSGL 136 (521)
T ss_pred HHHHcCCccc----------------------cCCCCc--cccchH-HHHHHHHHHHHHHhcCCceEEEE-hHHhhhccc
Confidence 224444442 345552 212223 38999999999999999998766 577898888
Q ss_pred hHHHHHHHHHcC-----Cee-----eeCCcEE---EEeccCCCCcceEEEc--cCCccccchh-------hHH----HHH
Q psy5226 279 VSLVTKLLIQSG-----KTY-----YKDGALW---LRTTDYGDDKDRVVRK--SNGDFTYFVS-------DIA----YHI 332 (582)
Q Consensus 279 i~~~i~~L~~~g-----~~~-----~~~Ga~~---~~~~~~g~~~~~vl~k--sDG~~~Y~~~-------DiA----~~~ 332 (582)
..+.+....++- ++- +-.+.+| ..|+++|.-....+.+ .+|+..|.|. ||- ..-
T Consensus 137 ~~~~i~~ale~rdeI~~il~~~~~~~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~ 216 (521)
T COG1384 137 YDEAIRIALERRDEIMEILNEYRGRELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLP 216 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCcccCCceeccccccccCCcceeEEEEecCCceEEEEecCCccceeeccccCcccc
Confidence 877776655431 111 1123333 2356677622233333 3456778764 331 346
Q ss_pred hhhhcCCceEE-----EEEecCcch----hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHH
Q psy5226 333 FKWERGFIQAI-----NIQGDDHQG----TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIR 403 (582)
Q Consensus 333 ~r~~~~~d~~i-----~V~g~dh~~----~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~ 403 (582)
||.+|+..|.+ =-.|+||.. |-+-...+-+.+ |+++| ..+.|+|+.+. +|+ |||||+|++|+++
T Consensus 217 WRvdWp~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~--g~~pP--~~~~YE~i~lk-g~~--~mSsSkG~~i~~~ 289 (521)
T COG1384 217 WRVDWPMRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIF--GYEPP--VPFVYEWILLK-GGG--KMSSSKGNVISLS 289 (521)
T ss_pred cCcCccchhhccCcccccCCcccccccCchHHHHHHHHHhc--CCCCC--CCCceEEEEec-CCc--ccccCCCcEEcHH
Confidence 77777655543 125899983 444434444578 98876 44568999773 334 9999999999999
Q ss_pred HHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHH-Hhhh
Q psy5226 404 NLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDL-ALKR 455 (582)
Q Consensus 404 dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~-~~~~ 455 (582)
|+|+-+ .++.+||++.+.+|++..+||++. +++.
T Consensus 290 dwlev~------------------~pE~lry~~~r~kP~r~~~~d~~~~il~l 324 (521)
T COG1384 290 DWLEVA------------------PPEVLRYLIARTKPNRHIDFDFDLGILKL 324 (521)
T ss_pred HHHHhc------------------CHhHeeeeeeecCCCcceecCCCCChhHH
Confidence 999988 999999999999999999999888 6663
No 56
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.80 E-value=2.7e-17 Score=193.74 Aligned_cols=194 Identities=19% Similarity=0.138 Sum_probs=117.0
Q ss_pred cEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHH--Hhh----hhcCCC-hhhH-----------hhh-hcchhhHHH
Q psy5226 374 NYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWL--SKT----ESKNDS-IEFR-----------EDL-IRGRDLMRF 434 (582)
Q Consensus 374 ~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~--~~~----~~~~~~-~~~~-----------~~~-~~~~~airy 434 (582)
.+..||+| +.++|+ |||||+||+|.+.|+++.+ ..+ ...+.. .+.. .-+ ..|.|++||
T Consensus 571 ~v~~HG~v-~d~~G~--KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~ 647 (995)
T PTZ00419 571 TVFLHAMV-RDSQGE--KMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRF 647 (995)
T ss_pred HHhccceE-ECCCCC--CcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHH
Confidence 67788888 445787 9999999999999998832 111 111100 0000 001 359999999
Q ss_pred HHhccC-CCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCccc-ccccCCCCCCHHHHHHHHHHhchHHH
Q psy5226 435 FLISRK-SDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLI-SIKDLSSLNTEKELSLLVKLSNYPEV 512 (582)
Q Consensus 435 ~~l~~~-~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~-~~~d~~~l~~~~e~~L~~~l~~f~~~ 512 (582)
++++.. ..+|+.||.+++.. . .+..+-+-+++.++.+.+.+......+.. .......+ ...++-++..+.++...
T Consensus 648 ~l~~~~~~~~Di~~~~~~v~~-~-~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~wIls~L~~~i~~ 724 (995)
T PTZ00419 648 GLLAYTQQGRNINLDINRVVG-Y-RHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESL-PWEDKWILHRLNVAIKE 724 (995)
T ss_pred HHHhcCCCCCCccccHHHHHH-H-HHHHHHHHHHHHHHHhcccccccccccccccccccccC-CHHHHHHHHHHHHHHHH
Confidence 999764 57899999988764 2 22333444555454443332211100000 00000112 34566788999999999
Q ss_pred HHHHHHhhchHHHHHHHHH--HHHHHHhhhhcccc-c-CCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 513 LVNSVKDLCPHYVAFYLRD--LAKELHGYYNTERI-L-VKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 513 v~~a~~~~~p~~l~~yl~~--La~~~n~fy~~~~v-l-~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
+.+++++++.+.+++.+++ +....|.|++.++. + .... ...|-........+|+..+.||.
T Consensus 725 v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~--~~~~~~~~~~L~~vL~~~l~LL~ 789 (995)
T PTZ00419 725 VTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSD--GERKQHAQDVLHTVLDIGLRLLH 789 (995)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCC--cHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 46677777776643 2 1111 11122344455566666666664
No 57
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=3.6e-17 Score=190.61 Aligned_cols=170 Identities=19% Similarity=0.246 Sum_probs=114.7
Q ss_pred EEEEecCcc-hhHHHHH-HHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRVK-AGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~~-~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+|+.|.||+ +||..+. .++... |.+|. ..++.|||+ +..+|+ |||||+||+|++.++++++
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~~--g~~P~-k~vl~HG~v-ld~~G~--KMSKSlGNvIdP~~ii~~y----------- 610 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVATR--GKAPY-KQVLTHGFT-VDGKGR--KMSKSLGNVIDPQDVIKKY----------- 610 (912)
T ss_pred EEEecccccchHHHHHHHHHHHhc--CCCcc-ceeEEeeeE-ECCCCC--CCCCCCCCcCCHHHHHHhc-----------
Confidence 577788887 4665433 222334 77665 478889998 445687 9999999999999999999
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHH
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKEL 500 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~ 500 (582)
|.|++||++++..+.+|++|+.+.+.+.. +....+.++ ..++-.....-.+.....+...+ .+.++
T Consensus 611 -------GaDalR~~ll~~~~~~D~~~s~~~l~~~~--~~~~kl~N~----~rf~~~nl~~~~~~~~~~~~~~l-~~~D~ 676 (912)
T PRK05743 611 -------GADILRLWVASTDYSGDVRISDEILKQVA--EAYRRIRNT----LRFLLGNLNDFDPAKDAVPYEEL-LELDR 676 (912)
T ss_pred -------ChHHHHHHHHhcCCCCCeeecHHHHHHHH--HHHHHHHHH----HHHHHhCccCCCcccccCCchhC-CHHHH
Confidence 99999999999888999999998876511 111222222 12111111110000000011112 35577
Q ss_pred HHHHHHhchHHHHHHHHHhhchHHHHHHHHHHH-HHHHh-hhhcc
Q psy5226 501 SLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLA-KELHG-YYNTE 543 (582)
Q Consensus 501 ~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La-~~~n~-fy~~~ 543 (582)
.++..+.++.+.+.+++++++.+.+++.+++++ ..+.. |++..
T Consensus 677 ~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~ 721 (912)
T PRK05743 677 WALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDII 721 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheec
Confidence 788999999999999999999999999999998 36644 44443
No 58
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=8.9e-19 Score=189.37 Aligned_cols=191 Identities=22% Similarity=0.267 Sum_probs=137.4
Q ss_pred HHHHHHHHHhhhCCccccc--------ccccccccCCChHHHHHHHHHcCCeee----------------eC-------C
Q psy5226 249 LRREQDIDLKIFGVKFDNY--------CLESSLYKTGKVSLVTKLLIQSGKTYY----------------KD-------G 297 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~~--------~~ES~~~~~~~i~~~i~~L~~~g~~~~----------------~~-------G 297 (582)
+.+.+.++|++||+.+|.- +..|+. .+...++++.|.++|.+|. .. |
T Consensus 55 ~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS~r--~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~ 132 (476)
T PRK01406 55 AEEAILEGLKWLGLDWDEGPDGGPYGPYRQSER--LDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDG 132 (476)
T ss_pred HHHHHHHHHHHCCCCCCCCCccCCCCceehhcC--HHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCc
Confidence 3456788899999999853 334532 2456889999999999984 01 1
Q ss_pred c------------------EEEEe--ccC----------CC-------CcceEEEccCCccccchhhH-HHHHhhhhcCC
Q psy5226 298 A------------------LWLRT--TDY----------GD-------DKDRVVRKSNGDFTYFVSDI-AYHIFKWERGF 339 (582)
Q Consensus 298 a------------------~~~~~--~~~----------g~-------~~~~vl~ksDG~~~Y~~~Di-A~~~~r~~~~~ 339 (582)
. .++++ ++. |+ ..|.||.||||+++|.+.|+ +.|.+++
T Consensus 133 ~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~i---- 208 (476)
T PRK01406 133 RCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGI---- 208 (476)
T ss_pred cccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCC----
Confidence 1 11222 110 11 13689999999999999998 7888765
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh---h---h
Q psy5226 340 IQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK---T---E 413 (582)
Q Consensus 340 d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~---~ 413 (582)
+++| +|+||..++.++..+++++ |++.+ .+.|++++ ++.+|+ |||||+| .++++++++++.. + .
T Consensus 209 thvI--rG~d~~~~t~~q~~l~~al--G~~~p--~~~H~pli-~~~~g~--klSKR~g-~~~l~~l~~~G~~p~Ai~n~l 278 (476)
T PRK01406 209 THVI--RGEDHLSNTPKQILLYEAL--GWEVP--VFAHLPLI-LGPDGK--KLSKRHG-ATSVEQYRDMGYLPEALLNYL 278 (476)
T ss_pred CEEE--ECchhhcCHHHHHHHHHHh--CCCCC--eEEEeeee-eCCCCC--cccCcCC-ccCHHHHHHCCCCHHHHHHHH
Confidence 6774 9999999999999999999 98755 78889885 455777 9999999 6799999887521 1 1
Q ss_pred hc-CCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226 414 SK-NDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSD 457 (582)
Q Consensus 414 ~~-~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~ 457 (582)
.. .-+.. .+++....+++++|+++..+.+++.|||+++.. .|
T Consensus 279 ~~lG~s~~-~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~-~N 321 (476)
T PRK01406 279 ALLGWSHG-DQEIFSLEELIELFDLERVSKSPARFDIKKLDW-LN 321 (476)
T ss_pred HHhCCCCC-ccccCCHHHHHHhcChhhCCCCCccccHHHHHH-HH
Confidence 11 11111 111112458999999999999999999999987 54
No 59
>PLN02882 aminoacyl-tRNA ligase
Probab=99.79 E-value=1.7e-16 Score=187.52 Aligned_cols=181 Identities=16% Similarity=0.138 Sum_probs=117.9
Q ss_pred CCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC--CCc
Q psy5226 367 GIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS--DTD 444 (582)
Q Consensus 367 G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~--~~~ 444 (582)
|.++. ..++++||+ +.++|+ |||||+||+|.+.++++++ |.|++||++++... ..|
T Consensus 594 ~~~pf-k~VivhG~v-lde~G~--KMSKSlGNvIdP~evi~~Y------------------GADaLR~~Ll~s~~~~~~d 651 (1159)
T PLN02882 594 DKPAF-KNLICNGLV-LAEDGK--KMSKSLKNYPDPNEVIDKY------------------GADALRLYLINSPVVRAEP 651 (1159)
T ss_pred CCCCc-ceeEEccEE-ECCCCC--CcccCCCCCCCHHHHHHHh------------------CcHHHHHHHHhCCcccCcC
Confidence 66655 488899998 455788 9999999999999999999 99999999997653 688
Q ss_pred ccccHHHHhhhcCCCchHHHH----HHHHHHHHHHHhcCCCCCcccccccC-CCCCCHHHHHHHHHHhchHHHHHHHHHh
Q psy5226 445 FIFDIDLALKRSDENPVYYIQ----YAHARIFSLLNQWGGDKKSLISIKDL-SSLNTEKELSLLVKLSNYPEVLVNSVKD 519 (582)
Q Consensus 445 ~~F~~~~~~~~~~~n~~~ylq----Ya~aR~~silrk~~~~~~~~~~~~d~-~~l~~~~e~~L~~~l~~f~~~v~~a~~~ 519 (582)
+.|+++.+.+..+... .-+- +...++..+..+...+-.| ....+. ... .+.++-++..+....+.+.+++++
T Consensus 652 ~~fs~~~v~~~~~~~l-~kl~Na~rfl~~~~~~~~~~~~~~~~p-~~~~~~~~~~-~~~D~wIls~l~~li~~v~~~me~ 728 (1159)
T PLN02882 652 LRFKEEGVFGVVKDVF-LPWYNAYRFLVQNAKRLEVEGGAPFVP-LDLAKLQNSA-NVLDRWINSATQSLVKFVREEMGA 728 (1159)
T ss_pred cccCHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhccccCCCc-cccccccccC-CHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999775222110 0011 1122333333332222111 000011 011 345667888999999999999999
Q ss_pred hchHHHHHHHHHHHH-HHHhhhhccc--ccCCChhhhHHHHHHHHHHHHHHHHHHHhc
Q psy5226 520 LCPHYVAFYLRDLAK-ELHGYYNTER--ILVKNITIKMARLALIYSIGQVLNNGLKLI 574 (582)
Q Consensus 520 ~~p~~l~~yl~~La~-~~n~fy~~~~--vl~~~~~~~~~RL~L~~a~~~vL~~~L~lL 574 (582)
++.+.+++.+++.+. ..|.|++.++ ....+. ...+...+.....+|...+.+|
T Consensus 729 y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~--~~~~~~al~tL~~vL~~l~~LL 784 (1159)
T PLN02882 729 YRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTG--EEDCRTALSTLYNVLLTSCKVM 784 (1159)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999886 4678887664 232211 1123344445555565555554
No 60
>PLN02381 valyl-tRNA synthetase
Probab=99.77 E-value=5.2e-16 Score=182.36 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++..|...-||++|++||||+++.++.|+++|+.|..||+|......+.+|..+-..+. +. + +..
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve----k~--l-~~~------ 192 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVE----KK--L-MRE------ 192 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHH----HH--h-Hhh------
Confidence 3456888899999999999999999999999999999999999999999999976632211 00 0 000
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccccc---ccccCC
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLES---SLYKTG 277 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES---~~~~~~ 277 (582)
.|.... +.+..+..+.++++. +.+...+++.+++||+.+| |.+|- +.-...
T Consensus 193 --~~~~~~----------------------~~~re~f~~~~~~~~-~~~~~~~~~q~~~lG~s~D-w~~~~~T~d~~~~~ 246 (1066)
T PLN02381 193 --RHLTRH----------------------DIGREEFVSEVWKWK-DEYGGTILNQLRRLGASLD-WSRECFTMDEQRSK 246 (1066)
T ss_pred --cCCChh----------------------hCCHHHHHHHHHHHH-HHHHHHHHHHHHHhCchhc-cCCccccCCHHHHH
Confidence 000000 111122334455554 7777889999999999998 44332 111135
Q ss_pred ChHHHHHHHHHcCCeee
Q psy5226 278 KVSLVTKLLIQSGKTYY 294 (582)
Q Consensus 278 ~i~~~i~~L~~~g~~~~ 294 (582)
.+..++..|.++|++|+
T Consensus 247 ~v~~~F~~L~~~GlIyr 263 (1066)
T PLN02381 247 AVTEAFVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHHHHHHCCCEEe
Confidence 68899999999999985
No 61
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.77 E-value=6.3e-16 Score=180.69 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=112.0
Q ss_pred EEEEecCcc-hhHHHHH-HHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHH---------HHHh
Q psy5226 343 INIQGDDHQ-GTITRVK-AGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIK---------WLSK 411 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~~-~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~---------~~~~ 411 (582)
+++.|.||+ +||..+. .++.+. |..|.+ .+..|||+ +..+|+ |||||+||+|++.|+++ ++
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~~~--g~~Pfk-~v~~HG~v-ld~~G~--KMSKSlGNvI~p~~vi~~~~~~~~~~~y-- 638 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVATK--GKAPYK-SVLTHGFV-LDEKGF--KMSKSLGNVVDPRLVIEGGKNQKQEPAY-- 638 (974)
T ss_pred eeeeeccccchHHHHHHHHHHHhc--CCCccc-eEEEeccE-ECCCCC--CcCCCCCCcCCHHHHHhhcccccccccc--
Confidence 455666655 4554433 223333 664443 66667887 445687 99999999999999999 45
Q ss_pred hhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCC--CCCcccccc
Q psy5226 412 TESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGG--DKKSLISIK 489 (582)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~--~~~~~~~~~ 489 (582)
|.|++||++++.++.+|+.|+.+.+.+.. + .+.|+...+|-... ....+....
T Consensus 639 ----------------GaD~lR~~l~~~~~~~d~~~s~~~l~~~~--~-------~~~kl~n~~rf~lgnl~~~~~~~~~ 693 (974)
T PLN02843 639 ----------------GADVLRLWVASVDYTGDVLIGPQILKQMS--D-------IYRKLRGTLRYLLGNLHDWKPDNAV 693 (974)
T ss_pred ----------------ChHHHHHHHHhcccCCCceeCHHHHHHHH--H-------HHHHHHHHHHHHHhCccCCCccccc
Confidence 99999999999999999999998876421 1 12233333221100 000000000
Q ss_pred cCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHH--HHHHHhhhhccc
Q psy5226 490 DLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDL--AKELHGYYNTER 544 (582)
Q Consensus 490 d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~L--a~~~n~fy~~~~ 544 (582)
....+ .+.++-++..+.++.+.+.+++++++.+.+++.+++. ....|.|++..+
T Consensus 694 ~~~~~-~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~K 749 (974)
T PLN02843 694 PYEDL-PSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAK 749 (974)
T ss_pred Ccccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcc
Confidence 11112 2446678889999999999999999999999999875 567777877664
No 62
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.75 E-value=1.2e-15 Score=178.42 Aligned_cols=170 Identities=15% Similarity=0.224 Sum_probs=115.6
Q ss_pred EEEEecCcc-hhHHHHHHH-HHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRVKAG-LQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~~~~-l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+|+.|.||+ ++|..+... +... |..|. ..+..|||+ +..+|+ |||||+||+|.+.++++++
T Consensus 586 ~~~eG~Di~rgWF~s~ll~s~~~~--~~~P~-k~V~~HG~v-ld~~G~--KMSKSlGNvIdP~~ii~~y----------- 648 (961)
T PRK13804 586 LYLEGSDQHRGWFNSSLLESCGTR--GRAPY-KAVLTHGFT-LDEKGE--KMSKSLGNTVSPQDVIKQS----------- 648 (961)
T ss_pred EEEEEcccccHHHHHHHHHHHHhc--CCCCh-hhEEEeccE-ECCCCC--CccCCCCCcCCHHHHHHhc-----------
Confidence 455666766 355543221 1222 44444 377778888 444687 9999999999999999999
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHH
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKEL 500 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~ 500 (582)
|.|++||++++..+.+|++|+++.+.+. .+....+.+++.++.+.+.++...... .....+ .+.++
T Consensus 649 -------GaD~lRl~lls~~~~~D~~fs~~~l~~~--~~~~~kL~N~~rf~l~nl~~~~~~~~~----~~~~~~-~~~D~ 714 (961)
T PRK13804 649 -------GADILRLWVASVDYSDDQRIGKEILKQV--SETYRKLRNTLRWLLGNLAHFDPGEDV----VAYADL-PELER 714 (961)
T ss_pred -------CHHHHHHHHHhCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhccccCCccccc----CChhhc-CHHHH
Confidence 9999999999988899999999987552 122334555543333333332211100 001112 34466
Q ss_pred HHHHHHhchHHHHHHHHHhhchHHHHHHHHHHH-HHH-Hhhhhcc
Q psy5226 501 SLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLA-KEL-HGYYNTE 543 (582)
Q Consensus 501 ~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La-~~~-n~fy~~~ 543 (582)
.++..+.++.+.+.+++++++.+.+++.+++++ ..+ |.|++..
T Consensus 715 wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~ 759 (961)
T PRK13804 715 YMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIR 759 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999998 566 5555544
No 63
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.74 E-value=3.1e-18 Score=142.32 Aligned_cols=85 Identities=32% Similarity=0.450 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeEEee
Q psy5226 7 QRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEII 86 (582)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v~~~ 86 (582)
++|++.|+++|++++........+.|+.|+++++||||||+||.+||.+|++|++||++|++.|..++ .|++|+++
T Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~GD~~~n~a~~lak~~k~~P~~iA~~i~~~l~~~~----~i~~vev~ 76 (85)
T PF03485_consen 1 QQLKKAISEALKKAFGIDLEEIEIQIEKPPNPKFGDYQTNIAFRLAKKLKKNPREIAEEIAEKLEKSP----IIEKVEVA 76 (85)
T ss_dssp -HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSGGG-SEEEEHHHHHHHHTTS-HHHHHHHHHHCHCTTT----TEEEEEEE
T ss_pred ChHHHHHHHHHHHHhcccccccceEEEcCCCCCceeeeccchHHHHHHcCCCHHHHHHHHHHhcCCCC----CEEEEEEc
Confidence 35777888888887521123346788899999999999999999999999999999999999998877 79999999
Q ss_pred cCcEEEEEe
Q psy5226 87 KPGFINLKI 95 (582)
Q Consensus 87 ~~GfiN~~l 95 (582)
|||||||+|
T Consensus 77 gpGFiN~~L 85 (85)
T PF03485_consen 77 GPGFINFFL 85 (85)
T ss_dssp TTTEEEEEE
T ss_pred CCcEEEEeC
Confidence 999999986
No 64
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.74 E-value=3.6e-15 Score=174.43 Aligned_cols=133 Identities=13% Similarity=0.155 Sum_probs=98.9
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDL 451 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~ 451 (582)
..++|+||+.. +|+ |||||+||+|++.|+++++ |.|++||++++. .+.+|.+|+++.
T Consensus 606 k~i~~~G~vl~--~G~--KMSKSlGNvI~p~d~i~~y------------------GaDalRl~Ll~~~~~~~D~~fs~~~ 663 (938)
T TIGR00395 606 RGIVVNGYVML--EGK--KMSKSKGNVLTLEQAVEKF------------------GADVARLYIADAAETVQDADWKESE 663 (938)
T ss_pred cEEEEeceEEe--CCc--cccCcCCCCCCHHHHHHHc------------------ChHHHHHHHHhcCCCCCCCCcCHHH
Confidence 48899999976 788 9999999999999999999 999999999987 679999999999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHH-HHHH
Q psy5226 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVA-FYLR 530 (582)
Q Consensus 452 ~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~-~yl~ 530 (582)
+.+..+ .+...++.+..++.... ... . . .+ ...++.++..+.+..+.+.+++++++.+.++ .-++
T Consensus 664 ~~~~~~-----~l~~l~n~~~~~~~~~~-~~~----~-~--~~-~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~ 729 (938)
T TIGR00395 664 VEGTIL-----RLERLYEFAEEITKESN-LET----G-E--ET-SFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALF 729 (938)
T ss_pred HHHHHH-----HHHHHHHHHHHHHhhcc-cCC----C-c--cC-ChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 876332 12222222222222211 000 0 0 11 3446668888999999999999999999999 6688
Q ss_pred HHHHHHHhhhh
Q psy5226 531 DLAKELHGYYN 541 (582)
Q Consensus 531 ~La~~~n~fy~ 541 (582)
++....|.|..
T Consensus 730 ~~~~~~n~Yl~ 740 (938)
T TIGR00395 730 DLQADVDWYRR 740 (938)
T ss_pred HHHHHHHHHHH
Confidence 99888766643
No 65
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.74 E-value=3.8e-15 Score=171.63 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=97.3
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDL 451 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~ 451 (582)
..++|+||| |||||+||+|++.|+++++ |.+++|+++++. .+++|++|+.+.
T Consensus 561 k~v~~~G~v---------KMSKS~GN~i~p~~~i~~y------------------gaD~lRl~l~~~~~~~~d~~~s~~~ 613 (805)
T PRK00390 561 KKLLTQGMV---------KMSKSKGNVVDPDDIIEKY------------------GADTARLFEMFAGPPEKDLEWSDSG 613 (805)
T ss_pred hhheecCcE---------EeCCCCCCCCCHHHHHHHc------------------ChHHHHHHHHhcCCccCCcccCHHH
Confidence 467888887 8999999999999999999 999999999884 779999999888
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHH
Q psy5226 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRD 531 (582)
Q Consensus 452 ~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~ 531 (582)
+.+.. .+ +.|+...++...... . ..+. .+ .+.++.++..+.++-..+.+++++++.+.+++.+++
T Consensus 614 l~~~~-----~~----l~kl~~~~~~~~~~~-~---~~~~-~~-~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~ 678 (805)
T PRK00390 614 VEGAY-----RF----LQRVWRLVVDAKGEA-G---ALDV-AA-LSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALME 678 (805)
T ss_pred HHHHH-----HH----HHHHHHHHHHhhhcc-c---ccCc-cc-ChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76521 12 345555555411110 0 1111 11 245667888999999999999999999999999999
Q ss_pred HHHHHHhhh
Q psy5226 532 LAKELHGYY 540 (582)
Q Consensus 532 La~~~n~fy 540 (582)
+...+++||
T Consensus 679 f~n~lsk~~ 687 (805)
T PRK00390 679 LVNALYKAE 687 (805)
T ss_pred HHHHHHHHH
Confidence 999999998
No 66
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.73 E-value=4e-17 Score=173.37 Aligned_cols=194 Identities=21% Similarity=0.268 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeee-----------------------eCCcE----
Q psy5226 247 AYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYY-----------------------KDGAL---- 299 (582)
Q Consensus 247 ~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~-----------------------~~Ga~---- 299 (582)
+.+++.+.++|++|||.||.+++||+.+ +.+.++++.|.++|++|. .+|.+
T Consensus 51 ~~~~~~I~e~L~wLGI~~De~y~QSer~--~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~ 128 (445)
T PRK12558 51 QEYADAIAEDLKWLGINWDRTFRQSDRF--DRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLT 128 (445)
T ss_pred HHHHHHHHHHHHHcCCCCCccccHHHHH--HHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCC
Confidence 4556778999999999999999999987 468999999999999984 01110
Q ss_pred --------------E--EEecc----C-----C-------CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEe
Q psy5226 300 --------------W--LRTTD----Y-----G-------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQG 347 (582)
Q Consensus 300 --------------~--~~~~~----~-----g-------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g 347 (582)
. ++..+ | | ...|.||.|+||.|+|. +|...+....+.+++ |.|
T Consensus 129 ~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~---fA~vVDD~~m~ITHV--iRG 203 (445)
T PRK12558 129 EEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYT---LPSVVDDIDMGITHI--IRG 203 (445)
T ss_pred HHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCCCcccc---ccceeccccCCCCEE--Eec
Confidence 0 11110 0 1 11367999999999997 345555555556677 899
Q ss_pred cCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhh-------hcCCChh
Q psy5226 348 DDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTE-------SKNDSIE 420 (582)
Q Consensus 348 ~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~-------~~~~~~~ 420 (582)
.||.....+...+.+++ |++.| .+.|++++ +..+|+ |||||.|. +++.++.+.+...+ .-..+..
T Consensus 204 ~d~l~~t~~q~~l~~al--g~~~P--~f~H~pli-~~~~g~--KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~ 275 (445)
T PRK12558 204 EDHVTNTAVQIQIFEAL--GAKPP--VFAHLSLL-TGADGK--GLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDP 275 (445)
T ss_pred hhhhhCCHHHHHHHHHh--CCCCC--eEEEcccc-cCCCcc--cccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCC
Confidence 99998888778888999 98876 78899998 456787 99999997 58888776653211 1111111
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSD 457 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~ 457 (582)
. +++.--.+.+..|.+.+-..++..||.+++.. .|
T Consensus 276 ~-~e~~~~~eli~~F~l~~~~~~~~~fd~~KL~w-~N 310 (445)
T PRK12558 276 V-EPYTSMEELAESFDLSSFSRAPAKFDPEDLER-LN 310 (445)
T ss_pred C-cccCCHHHHHHhCCHhhCCCccccCCHHHHHH-HH
Confidence 1 12222446677888888888999999999877 54
No 67
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.72 E-value=8.6e-15 Score=172.69 Aligned_cols=176 Identities=16% Similarity=0.150 Sum_probs=113.3
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC--CCcccccHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS--DTDFIFDID 450 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~--~~~~~F~~~ 450 (582)
..++.+||+ +.++|+ |||||+||+|.+.++++++ |.|++||++++... ..|..|+++
T Consensus 705 K~VlvHG~V-ld~dG~--KMSKSlGNvIDP~evI~kY------------------GADaLR~~Lls~~~~~~~Dl~Fse~ 763 (1205)
T PTZ00427 705 KNLICNGLV-LASDGK--KMSKRLKNYPDPLYILDKY------------------GADSLRLYLINSVAVRAENLKFQEK 763 (1205)
T ss_pred ceeEEccEE-EcCCCC--CcccCCCCCCCHHHHHHhc------------------CCcHHHHHHHhcCCCCCcccccCHH
Confidence 477888998 556788 9999999999999999999 99999999998643 689999999
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHH-HHhcCCC---CCccccccc-CCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHH
Q psy5226 451 LALKRSDENPVYYIQYAHARIFSL-LNQWGGD---KKSLISIKD-LSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYV 525 (582)
Q Consensus 451 ~~~~~~~~n~~~ylqYa~aR~~si-lrk~~~~---~~~~~~~~d-~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l 525 (582)
.+.+..+.-.. -+-+++ |-... +..+... ... ..... ...+ .+.++-++..+....+.+.+++++++++.+
T Consensus 764 ~v~e~~r~~l~-klwN~~-rF~~~~i~~~~~~~~~~f~-~~~~~~~~~~-~~~DrWILs~l~~li~~v~~~me~Y~f~~A 839 (1205)
T PTZ00427 764 GVNEVVKSFIL-PFYHSF-RFFSQEVTRYECLNKKQFL-FNTDYIYKND-NIMDQWIFSSVQSLTKSVHTEMKAYKLYNV 839 (1205)
T ss_pred HHHHHHHHHHH-HHHHHH-HHHHhccccccccccccCC-cCcccccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 87542221110 111111 22211 1111100 000 00000 0112 345667889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhc---ccccCCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 526 AFYLRDLAKELHGYYNT---ERILVKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 526 ~~yl~~La~~~n~fy~~---~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
++.+++....+..+|=+ .+...+.. ...+...+.....+|...+.||.
T Consensus 840 ~~~i~~Fi~~lsnwYIe~~K~rl~~~~~--~~~~~~a~~tL~~vL~~~~~LLa 890 (1205)
T PTZ00427 840 LPKLLQFIENLTNWYIRLNRDRMRGSLG--EENCLQSLCTTYRTLHLFTVLMA 890 (1205)
T ss_pred HHHHHHHHHHhccHHHHHcchhhccCCC--cHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999998878887744 22222211 11233445556667777666664
No 68
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.72 E-value=9.5e-17 Score=172.31 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=134.8
Q ss_pred HHHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeee-----------------------eCC-------
Q psy5226 249 LRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYY-----------------------KDG------- 297 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~-----------------------~~G------- 297 (582)
+.+.+.++|++||+.+|. -+..|+- .+...+++++|.++|.+|. .+|
T Consensus 55 ~~~~i~~~L~WLGl~wDe~py~QSeR--~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~ 132 (513)
T PRK14895 55 AVEAIFSGLKWLGLDWNGEVIFQSKR--NNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDP 132 (513)
T ss_pred HHHHHHHHHHHcCCCCCCCceeEeCc--HHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccCh
Confidence 345567889999999983 2334542 2456889999999999983 001
Q ss_pred -------cEE--EEeccC----------C-------CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcc
Q psy5226 298 -------ALW--LRTTDY----------G-------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQ 351 (582)
Q Consensus 298 -------a~~--~~~~~~----------g-------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~ 351 (582)
... |+.+.- | ...|.||.|+||+++|... ++.+++..+.+++| +|.||.
T Consensus 133 ~~~~~~~~~~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a---~vVDD~~m~ithVI--RG~d~~ 207 (513)
T PRK14895 133 SIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLA---VVVDDHDMGITHII--RGDDHL 207 (513)
T ss_pred hhhhcCCCeeEEEEcCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhH---HHHHHHhcCCCEEE--ECchHh
Confidence 111 222110 1 1236799999999999965 78899888899995 999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhh------h-cCCChhhHhh
Q psy5226 352 GTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTE------S-KNDSIEFRED 424 (582)
Q Consensus 352 ~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~------~-~~~~~~~~~~ 424 (582)
.++.++..+++++ |++.+ .+.|++++. +.+|+ |||||.|.. ++.++.+.+...+ . -..+... ++
T Consensus 208 ~~t~~q~~l~~aL--G~~~p--~~~H~plv~-~~~g~--KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG~s~~~-~e 278 (513)
T PRK14895 208 TNAARQLAIYQAF--GYAVP--SMTHIPLIH-GADGA--KLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLGWSHGD-DE 278 (513)
T ss_pred hhHHHHHHHHHHc--CCCCC--eEEEEEeEE-cCCCC--ccccccCch-hHHHHHHCCCCHHHHHHHHHHhCCCCCC-cC
Confidence 9999999999999 98765 788999973 34677 999999985 7777766543211 1 1111111 11
Q ss_pred hhcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226 425 LIRGRDLMRFFLISRKSDTDFIFDIDLALKRSD 457 (582)
Q Consensus 425 ~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~ 457 (582)
+.--.+.+..|.+.+-..++..||++++.. .|
T Consensus 279 ~~~~~el~~~F~~~~v~~s~~~FD~~KL~w-lN 310 (513)
T PRK14895 279 IISMTQAIDWFNLDSLGKSPSKLDFAKMNS-LN 310 (513)
T ss_pred CCCHHHHHhhCCHHhCcCCcCcCCHHHHHH-HH
Confidence 222346677888988888999999999986 44
No 69
>KOG1247|consensus
Probab=99.70 E-value=1.5e-16 Score=160.54 Aligned_cols=337 Identities=14% Similarity=0.115 Sum_probs=227.3
Q ss_pred CCCcEEEEEEecCCCCCCCccchhhh-hHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCC
Q psy5226 120 GSNKKILIEFVSANPTGPLHIGHGRQ-CAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWP 198 (582)
Q Consensus 120 ~~~~~v~Ve~sspN~~k~lHiGHlRs-~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~ 198 (582)
.+...++|.-+-|.++...|+|++-. ...+|+.||+.+..|++..+++..+.+|+..-.=+.
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkal----------------- 73 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKAL----------------- 73 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHH-----------------
Confidence 35567899999999999999999985 555999999999999999999999999974321100
Q ss_pred CCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCC
Q psy5226 199 DTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGK 278 (582)
Q Consensus 199 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~ 278 (582)
. |.-.|. .++ +++...++..|++++|.||.+.+.+.-.+.+.
T Consensus 74 ----------------e---------------eg~tP~---elc----dKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i 115 (567)
T KOG1247|consen 74 ----------------E---------------EGLTPQ---ELC----DKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEI 115 (567)
T ss_pred ----------------H---------------ccCCHH---HHH----HhcchhHHHHHHhhcccccccCcccCcchhHH
Confidence 0 222342 233 67778889999999999999998887777788
Q ss_pred hHHHHHHHHHcCCeeeeCC--cEEE-------------EeccCCCCc--------------------c-eEEEccC----
Q psy5226 279 VSLVTKLLIQSGKTYYKDG--ALWL-------------RTTDYGDDK--------------------D-RVVRKSN---- 318 (582)
Q Consensus 279 i~~~i~~L~~~g~~~~~~G--a~~~-------------~~~~~g~~~--------------------~-~vl~ksD---- 318 (582)
.+.++..|.++|++.+..- -+|- .++.+|.+. + ..+-++-
T Consensus 116 ~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~ 195 (567)
T KOG1247|consen 116 CQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVR 195 (567)
T ss_pred HHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhhhhhhhhcCHHHhcCcchheeccCCeee
Confidence 8999999999998765321 1110 011111100 0 0011110
Q ss_pred --------------------------Cc------------------cccchhhHHH----HHhhhhcCCceEEEEEecCc
Q psy5226 319 --------------------------GD------------------FTYFVSDIAY----HIFKWERGFIQAINIQGDDH 350 (582)
Q Consensus 319 --------------------------G~------------------~~Y~~~DiA~----~~~r~~~~~d~~i~V~g~dh 350 (582)
|. +--+|||+-+ -+.++ -|+++|||..+-
T Consensus 196 ~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle~f---k~KVfYVWFDA~ 272 (567)
T KOG1247|consen 196 QTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLEKF---KDKVFYVWFDAP 272 (567)
T ss_pred eeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChhhh---cccEEEEEEcCc
Confidence 00 0012333211 01111 289999999887
Q ss_pred chhHHHHH----------------HHHHHHHcCCCCCCC----------------cEEEE----EEEEEeeCCeeeeccc
Q psy5226 351 QGTITRVK----------------AGLQAINIGIPNDYP----------------NYILH----KMVTVIKNGKEVKISK 394 (582)
Q Consensus 351 ~~~~~~~~----------------~~l~~l~~G~~~~~~----------------~~~~~----~~v~l~~~G~~~KMSk 394 (582)
++|++-.. ...+.| |.+.... .++|+ ++++. ++| |+||
T Consensus 273 IGYlsit~~yt~ew~kWwknpE~v~LyqFm--gKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYLny-E~g---KFSK 346 (567)
T KOG1247|consen 273 IGYLSITKNYTDEWEKWWKNPENVELYQFM--GKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNY-EDG---KFSK 346 (567)
T ss_pred ceEEEeehhhhHHHHHHhcCHhhhhHHHHh--ccCCCcceeeecchhhhcCCCCchhheeechhhhhcc-ccC---cccc
Confidence 77643221 123445 5432110 11111 11211 566 7999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHHHHHH
Q psy5226 395 RSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHARIFS 473 (582)
Q Consensus 395 r~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~s 473 (582)
|+|-.|+-.++-+.. ++++..||++|+.+| .+|..|+|+++..+.|+...+-|.+-.+|+.+
T Consensus 347 SrgvGvFG~~aqd~g-----------------i~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~ 409 (567)
T KOG1247|consen 347 SRGVGVFGNDAQDTG-----------------IPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLK 409 (567)
T ss_pred cccccccccccccCC-----------------CCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999888876654 388999999999988 69999999999887775444444444589999
Q ss_pred HHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccc
Q psy5226 474 LLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTER 544 (582)
Q Consensus 474 ilrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~ 544 (582)
+......+.+| . + .+ ......|+..+..+-....++++.......++-++++++.-|+|.+..+
T Consensus 410 fv~~~~~g~Vp---~--~-~~-~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~ 473 (567)
T KOG1247|consen 410 FVAAKYNGVVP---E--M-EL-TSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENT 473 (567)
T ss_pred HHHHhhCCccc---c--e-ee-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccc
Confidence 88766666655 2 2 13 2336678888888888888889988999999999999999999998875
No 70
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.69 E-value=7.4e-15 Score=169.64 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=85.7
Q ss_pred ecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226 391 KISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDLALKRSDENPVYYIQYAHA 469 (582)
Q Consensus 391 KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~~~~~~~n~~~ylqYa~a 469 (582)
|||||+||+|++.|+++++ |.+++|+++++. .+.++++|+.+.+.... + + +.
T Consensus 604 KMSKS~GN~v~p~~ii~~y------------------gaDalRl~~l~~~~~~~d~~~~~~~l~~~~--~---~----l~ 656 (842)
T TIGR00396 604 KMSKSKGNGIDPQEIVKKH------------------GADALRLYIMFMGPIAASLEWNDSGLEGAR--R---F----LD 656 (842)
T ss_pred hhhhcCCCcCCHHHHHHHc------------------CchHHHHHHHhcCCcCCCCccCHHHHHHHH--H---H----HH
Confidence 9999999999999999999 999999999965 67899999988875411 1 1 23
Q ss_pred HHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhc-hHHHHHHHHHHHHHHHhh
Q psy5226 470 RIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLC-PHYVAFYLRDLAKELHGY 539 (582)
Q Consensus 470 R~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~-p~~l~~yl~~La~~~n~f 539 (582)
|+.++++........ ....+...+ .+.++.|+..+.++-..+.++++++. .+.+++.++++...++++
T Consensus 657 kl~~~~~~~~~~~~~-~~~~~~~~l-~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~ 725 (842)
T TIGR00396 657 RVWNLFYNILGELDG-KTYLTPTIL-EEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKA 725 (842)
T ss_pred HHHHHHHHHHhhhcc-cccCCcccC-CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 444444332110000 000011112 35567788899999999999999988 999999999998766654
No 71
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.9e-13 Score=151.20 Aligned_cols=130 Identities=16% Similarity=0.219 Sum_probs=92.0
Q ss_pred cEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHH
Q psy5226 374 NYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLA 452 (582)
Q Consensus 374 ~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~ 452 (582)
..+..|||.. .+|+ |||||+||+|+++|+++++ |.|++|.|.+...+ .++.+|+-+.+
T Consensus 565 ~L~~qGmVl~-~~g~--KMSKSKgN~v~p~~~i~~y------------------GADt~Rl~~m~~ap~~~d~~W~e~gv 623 (814)
T COG0495 565 KLITQGMVLG-EEGE--KMSKSKGNVVDPEEAVEKY------------------GADTVRLYIMFAAPPEQDLEWSESGV 623 (814)
T ss_pred hhhccceEEe-cCCC--ccccccCCCCCHHHHHHHh------------------CchHHHHHHHhhCChhhCCCCChhhh
Confidence 3677888854 2566 9999999999999999999 99999999999866 67877775554
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHH-HHHHHHHhchHHHHHHHHHh-hchHHHHHHHH
Q psy5226 453 LKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKE-LSLLVKLSNYPEVLVNSVKD-LCPHYVAFYLR 530 (582)
Q Consensus 453 ~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e-~~L~~~l~~f~~~v~~a~~~-~~p~~l~~yl~ 530 (582)
... .-+| .|+-.+.......... .+ ...+ ..+...+.++-..+.+..+. +.-..+..-++
T Consensus 624 ~g~-----~rfL----~r~~~l~~~~~~~~~~--------~~-~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m 685 (814)
T COG0495 624 EGA-----RRFL----QRVWNLVKEHLEKLVE--------EL-TKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALM 685 (814)
T ss_pred HHH-----HHHH----HHHHHHHHHhhhcccc--------cc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 331 1233 4666655543221110 11 1222 55667788888888888888 77788888889
Q ss_pred HHHHHHHhhhhc
Q psy5226 531 DLAKELHGYYNT 542 (582)
Q Consensus 531 ~La~~~n~fy~~ 542 (582)
+|...+..|...
T Consensus 686 ~l~N~l~~~~~~ 697 (814)
T COG0495 686 ELLNALRKYLRR 697 (814)
T ss_pred HHHHHHHHHHhc
Confidence 998888777654
No 72
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.61 E-value=7.4e-15 Score=159.85 Aligned_cols=232 Identities=20% Similarity=0.232 Sum_probs=153.2
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
+.+|+. .+.|+|+|+|||||+|++++-+.+|| +|+...+--++|....+
T Consensus 99 ~g~V~t-RFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~------------------------- 147 (567)
T PRK04156 99 KGKVVM-RFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT------------------------- 147 (567)
T ss_pred CCeEEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-------------------------
Confidence 345655 68999999999999999999999999 44555444444422100
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSL 281 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~ 281 (582)
.... ..+.+.+.+++++||+.+|.....|+.. +...+
T Consensus 148 -----------------------------~R~~------------~e~~~~I~edL~wLGl~wD~~~~qSdr~--~~y~~ 184 (567)
T PRK04156 148 -----------------------------KRPD------------PEAYDMILEDLKWLGVKWDEVVIQSDRL--EIYYE 184 (567)
T ss_pred -----------------------------ccch------------HHHHHHHHHHHHHcCCCCCCccCcccCH--HHHHH
Confidence 0001 2223557889999999999777777533 56788
Q ss_pred HHHHHHHcCCeeee------------CC----------------------------cEEEEeccC---CC--CcceEEEc
Q psy5226 282 VTKLLIQSGKTYYK------------DG----------------------------ALWLRTTDY---GD--DKDRVVRK 316 (582)
Q Consensus 282 ~i~~L~~~g~~~~~------------~G----------------------------a~~~~~~~~---g~--~~~~vl~k 316 (582)
+++.|.++|.+|.- .| ..++++..- .. -.|.++.|
T Consensus 185 ~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R 264 (567)
T PRK04156 185 YARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFR 264 (567)
T ss_pred HHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEE
Confidence 99999999999851 11 111111100 00 02345555
Q ss_pred cCC---------ccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCC
Q psy5226 317 SNG---------DFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNG 387 (582)
Q Consensus 317 sDG---------~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G 387 (582)
.+. -..|.|=|+|...+....+-+++ +.|.||.....+...+.++| |+..| .+.|++.+++ +|
T Consensus 265 ~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHV--iRg~d~~~~t~~Q~~l~~~L--g~~~P--~~~H~~~L~~--~g 336 (567)
T PRK04156 265 IVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHV--LRGKDHIDNTEKQRYIYDYF--GWEYP--ETIHYGRLKI--EG 336 (567)
T ss_pred EcCCCccccCCCeEEEEEeccCceeeecCCCCCeE--EcccccccChHHHHHHHHHc--CCCCc--eEEEcceecC--CC
Confidence 432 12233334554444443445555 67889888777777788999 99765 7889999864 67
Q ss_pred eeeecccCC-------C--------CcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHH
Q psy5226 388 KEVKISKRS-------G--------SYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDL 451 (582)
Q Consensus 388 ~~~KMSkr~-------G--------~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~ 451 (582)
. |||||+ | ...++..+...+ +.++|||.|+++... .++..|+|+.
T Consensus 337 ~--kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG-----------------~~PeAi~~fl~~lG~s~~~~~~~~~~ 397 (567)
T PRK04156 337 F--VLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRG-----------------ILPEAIRELIIEVGVKETDATISWEN 397 (567)
T ss_pred c--eeecccchhccccCccccccCCchHHHHHHHHcC-----------------CCHHHHHHHHHHhCCCCCCcccCHHH
Confidence 7 999999 4 235666666653 279999999998765 4899999999
Q ss_pred Hhh
Q psy5226 452 ALK 454 (582)
Q Consensus 452 ~~~ 454 (582)
+.+
T Consensus 398 L~~ 400 (567)
T PRK04156 398 LYA 400 (567)
T ss_pred HHH
Confidence 876
No 73
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.60 E-value=1.1e-14 Score=154.24 Aligned_cols=190 Identities=18% Similarity=0.266 Sum_probs=128.2
Q ss_pred HHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeee------------e-----------CCc-------
Q psy5226 249 LRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYY------------K-----------DGA------- 298 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~------------~-----------~Ga------- 298 (582)
+.+.+.++|++||+.+|.-+..|+.. +...+++++|.++|.+|. . +|.
T Consensus 50 ~~~~I~~~L~WlGl~wDe~y~QSeR~--~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~ 127 (433)
T PRK12410 50 KDKEILEILNLFGISWDKLVYQSENL--KFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDD 127 (433)
T ss_pred HHHHHHHHHHHcCCCCCCCeehhccH--HHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHh
Confidence 34556788999999999655566432 467889999999999983 0 010
Q ss_pred --------EEE--Eecc----C-----C-------CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcch
Q psy5226 299 --------LWL--RTTD----Y-----G-------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQG 352 (582)
Q Consensus 299 --------~~~--~~~~----~-----g-------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~ 352 (582)
.++ +.++ | | ...|.||.|+||.++|. +|...+....+..++ |.|.||..
T Consensus 128 e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~---fA~vVDD~~mgIThV--iRG~d~l~ 202 (433)
T PRK12410 128 EVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRADKTPTYN---FACAVDDMLYDISLI--IRGEDHVS 202 (433)
T ss_pred HHHhcCCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcCCCCcccc---ccchhchhhcCCCEE--Eechhhhh
Confidence 122 2211 0 0 11357999999999997 455566555566777 89999998
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhh-------hcCCChhhHhhh
Q psy5226 353 TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTE-------SKNDSIEFREDL 425 (582)
Q Consensus 353 ~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~-------~~~~~~~~~~~~ 425 (582)
.......+.+++ |++++ ..+.|++++ ++.+|+ |||||+|. .++.++.+.+...+ ....+.. +++
T Consensus 203 ~tp~Qi~Ly~aL--g~~~p-p~f~Hlpli-~~~~g~--KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~--~e~ 273 (433)
T PRK12410 203 NTPKQILIREAL--GYNKE-ITYAHLPII-LNEEGK--KMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTP--KEI 273 (433)
T ss_pred CcHHHHHHHHHc--CCCCC-CeEEEeeee-eCCCCC--eeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCc--ccc
Confidence 887778888999 99754 278899987 456887 99999996 47777766543210 0011111 122
Q ss_pred hcchhhHHHHHhccCCCCcccccHHHHhh
Q psy5226 426 IRGRDLMRFFLISRKSDTDFIFDIDLALK 454 (582)
Q Consensus 426 ~~~~~airy~~l~~~~~~~~~F~~~~~~~ 454 (582)
.--.+.+..|.+..-..++..||++++..
T Consensus 274 ~~~~eli~~F~~~~i~~~~~~~d~~kL~~ 302 (433)
T PRK12410 274 FTLEEAIEWFDIEKISKSPAKFDLKKLRF 302 (433)
T ss_pred cCHHHHHHhCCHhhCCCccccCCHHHHHH
Confidence 22345666777877778888999988876
No 74
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.60 E-value=2.7e-14 Score=160.26 Aligned_cols=134 Identities=26% Similarity=0.289 Sum_probs=87.6
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
++++..|...-||++|+||+||+++.++.|+++|+.+..||+|......+-+|.++-..+. + ..+..
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~ve----k---~l~~~------ 87 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVE----K---KLGIK------ 87 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHH----H---HTTTT------
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHH----H---hhccc------
Confidence 4567888889999999999999999999999999999999999999999999998754332 1 11100
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccc----cccccC
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLE----SSLYKT 276 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~E----S~~~~~ 276 (582)
.+ +... +.+.++..+.+++++ +.+.+.+++.+++||+.+| |.++ +.-| .
T Consensus 88 --~~-----------~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lG~~~D-w~~~y~T~d~~y-~ 140 (601)
T PF00133_consen 88 --EK-----------KDRK-----------DLGREEFREECREWA-EEFIEEQKEQFKRLGVSID-WDREYFTMDPEY-E 140 (601)
T ss_dssp --SH-----------HHCS-----------CSTHHHHHHHHHHHH-HHHHHHHHHHHHHTT--SE-CTCEEETTSHHH-H
T ss_pred --cc-----------cccc-----------ccccccchhhhcchh-hhhhhhhhhhhhheeeecc-cCCceEECCccH-h
Confidence 00 0000 112222233444443 7778889999999999887 2221 1112 2
Q ss_pred CChHHHHHHHHHcCCeee
Q psy5226 277 GKVSLVTKLLIQSGKTYY 294 (582)
Q Consensus 277 ~~i~~~i~~L~~~g~~~~ 294 (582)
..+..++.+|.++|++|+
T Consensus 141 ~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 141 KFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcCcEEe
Confidence 467889999999999985
No 75
>PLN02627 glutamyl-tRNA synthetase
Probab=99.60 E-value=9.4e-15 Score=157.25 Aligned_cols=193 Identities=19% Similarity=0.230 Sum_probs=129.4
Q ss_pred HHHHHHHHHhhhCCccccc---------ccccccccCCChHHHHHHHHHcCCeee----------------e-------C
Q psy5226 249 LRREQDIDLKIFGVKFDNY---------CLESSLYKTGKVSLVTKLLIQSGKTYY----------------K-------D 296 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~~---------~~ES~~~~~~~i~~~i~~L~~~g~~~~----------------~-------~ 296 (582)
+.+.+.++|++||+.+|.- +..|+- .+...++++.|.+.|.+|. . +
T Consensus 96 ~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR--~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd 173 (535)
T PLN02627 96 SEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSER--NAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYT 173 (535)
T ss_pred HHHHHHHHHHHcCCCCCcCcccCCCCCCeeeecc--HHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCC
Confidence 3455678899999999852 223432 2456889999999999983 0 1
Q ss_pred CcE------------------EE--Eecc-----C-----C-------CCcceEEEccCCccccchhhHHHHHhhhhcCC
Q psy5226 297 GAL------------------WL--RTTD-----Y-----G-------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGF 339 (582)
Q Consensus 297 Ga~------------------~~--~~~~-----~-----g-------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~ 339 (582)
|.+ ++ +..+ | | ...|.||.|+||.++|. +|...+....+.
T Consensus 174 ~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~---fA~vVDD~~mgI 250 (535)
T PLN02627 174 GKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYN---FCVAVDDATMGI 250 (535)
T ss_pred CccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCcccc---ccceecccccCC
Confidence 111 11 1111 0 1 12367999999999997 445555555566
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhh------
Q psy5226 340 IQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTE------ 413 (582)
Q Consensus 340 d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~------ 413 (582)
+++ |.|.||.....+...+.+++ |+++| .+.|++++ ++.+|+ |||||.|.+ ++.++.+.+...+
T Consensus 251 THV--iRG~D~l~nTpkQi~ly~aL--g~~~P--~f~Hlpli-~~~~g~--KLSKR~~~~-~v~~~r~~G~~PeAi~nyl 320 (535)
T PLN02627 251 THV--IRAEEHLPNTLRQALIYKAL--GFPMP--RFAHVSLI-LAPDRS--KLSKRHGAT-SVGQFREMGYLPDAMVNYL 320 (535)
T ss_pred cEE--EechhhhcChHHHHHHHHHc--CCCCC--eEEEccce-eCCCCC--ccccccCCc-cHHHHHHCCCCHHHHHHHH
Confidence 777 89999998888878888999 99877 68899998 456787 999999874 7887766543211
Q ss_pred -hcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226 414 -SKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSD 457 (582)
Q Consensus 414 -~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~ 457 (582)
.-..+....+++.--.+.+..|.+..-..++..||.+++.. .|
T Consensus 321 a~LGws~~~~~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~w-lN 364 (535)
T PLN02627 321 ALLGWNDGTENEIFTLEELVEKFSIDRINKSGAVFDSTKLKW-MN 364 (535)
T ss_pred HHhCCCCCCCCCcCCHHHHHHhCCHhhCCCcccccCHHHHHH-HH
Confidence 11111111112222446677888888888999999999887 54
No 76
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.57 E-value=1.9e-14 Score=140.89 Aligned_cols=208 Identities=21% Similarity=0.237 Sum_probs=141.0
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHH
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYIT 208 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 208 (582)
=++|+|+|++||||+|++++.+.+|| ++++..+--+.|....
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~--------------------------------- 46 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPR--------------------------------- 46 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCC---------------------------------
Confidence 57899999999999999999999999 5666666655553210
Q ss_pred HHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHH
Q psy5226 209 DIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQ 288 (582)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~ 288 (582)
.. ..+ ..+.+.+.+++++||+.+|.....|+. .+...++++.|.+
T Consensus 47 -----------------------r~--~~~--------~~~~~~i~~dL~wLGl~~d~~~~qS~r--~~~y~~~~~~Li~ 91 (240)
T cd09287 47 -----------------------TK--RPD--------PEAYDMIPEDLEWLGVKWDEVVIASDR--IELYYEYARKLIE 91 (240)
T ss_pred -----------------------cc--cch--------HHHHHHHHHHHHHcCCCCCCccchhcc--HHHHHHHHHHHHH
Confidence 00 001 112233678999999999966666653 2567888999999
Q ss_pred cCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCC
Q psy5226 289 SGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGI 368 (582)
Q Consensus 289 ~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~ 368 (582)
+|.+|.. ...|+ +.++ .++| ++|...+....+-+++ |.|.||.....+...+.+++ |+
T Consensus 92 ~G~aY~~--------~~~~~--~~~i-----~ptY---~la~vVDD~~~gIThV--iRg~d~~~~t~~q~~l~~~L--g~ 149 (240)
T cd09287 92 MGGAYVH--------PRTGS--KYRV-----WPTL---NFAVAVDDHLLGVTHV--LRGKDHIDNTEKQRYIYEYF--GW 149 (240)
T ss_pred cCCcccC--------cccCC--cEEE-----EEcc---ccceeeeccccCCCeE--EechhhhhCCHHHHHHHHHc--CC
Confidence 9999961 11111 2232 2455 3555555555556666 78999998877777888999 99
Q ss_pred CCCCCcEEEEEEEEEeeCCeeeecccCCCCc---------------ccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHH
Q psy5226 369 PNDYPNYILHKMVTVIKNGKEVKISKRSGSY---------------ITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMR 433 (582)
Q Consensus 369 ~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~---------------v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~air 433 (582)
+.| .+.|++.+.. +|+ |||||++.. .++..+.+.. +.++|++
T Consensus 150 ~~P--~~~H~pll~~--~~~--kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G-----------------~~p~ai~ 206 (240)
T cd09287 150 EYP--ETIHWGRLKI--EGG--KLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRG-----------------IRPEAIR 206 (240)
T ss_pred CCC--cEEeeeeecC--CCC--eeccccccccccccccccccCcchHHHHHHHHCC-----------------CCHHHHH
Confidence 776 6678999853 466 999999531 2444444332 2678888
Q ss_pred HHHhccC-CCCcccccHHHHhh
Q psy5226 434 FFLISRK-SDTDFIFDIDLALK 454 (582)
Q Consensus 434 y~~l~~~-~~~~~~F~~~~~~~ 454 (582)
-|+...- ..++..|+|+.+.+
T Consensus 207 ~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 207 DFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred HHHHHhCCCCCCCccCHHHHHH
Confidence 7666543 35777888888765
No 77
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.57 E-value=5.7e-14 Score=138.07 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=87.8
Q ss_pred HHHHHHHhhhCCcccc---------cccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCcc
Q psy5226 251 REQDIDLKIFGVKFDN---------YCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDF 321 (582)
Q Consensus 251 ~~~~~~~~~lgI~fD~---------~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~ 321 (582)
+.+.+++++||+.+|. .+..|+- .+...+++++|.++| ||.+
T Consensus 54 ~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r--~~~y~~~~~~L~~~g---------------------------dg~p 104 (239)
T cd00808 54 EAILEALKWLGLDWDEGPDVGGPYGPYRQSER--LEIYRKYAEKLLEKG---------------------------DGFP 104 (239)
T ss_pred HHHHHHHHHcCCCCCcCCccCCCCCCEeeeCC--HHHHHHHHHHHHHcC---------------------------CCCc
Confidence 4567789999999996 4445542 245677888887776 6888
Q ss_pred ccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCccc
Q psy5226 322 TYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYIT 401 (582)
Q Consensus 322 ~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~ 401 (582)
+|.. |...+....+.+++ |+|+||..+..++..+++++ |++.+ .+.|++.+ ++.+|+ |||||.|+ .+
T Consensus 105 tY~~---a~~vDD~~~~ithV--iRG~D~~~~t~~q~~l~~aL--g~~~p--~~~h~pll-~~~~g~--KLSKR~~~-~~ 171 (239)
T cd00808 105 TYHL---ANVVDDHLMGITHV--IRGEEHLSSTPKQILLYEAL--GWEPP--KFAHLPLI-LNPDGK--KLSKRKGD-TS 171 (239)
T ss_pred cccc---HHHHhHHhcCCCEE--EEChhhhhChHHHHHHHHHc--CCCCC--ceEeeccc-cCCCCC--cccCCCCC-cc
Confidence 8874 44556655567777 99999999999999999999 99766 55677765 233565 99999999 58
Q ss_pred HHHHHHHH
Q psy5226 402 IRNLIKWL 409 (582)
Q Consensus 402 l~dll~~~ 409 (582)
+..+.++.
T Consensus 172 l~~lr~~G 179 (239)
T cd00808 172 ISDYREEG 179 (239)
T ss_pred HHHHHHCC
Confidence 88876654
No 78
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.55 E-value=9.8e-14 Score=143.03 Aligned_cols=190 Identities=25% Similarity=0.321 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhhCCccc-ccccccccccCCChHHHHHHHHHcCCeee----------------eCC--------------
Q psy5226 249 LRREQDIDLKIFGVKFD-NYCLESSLYKTGKVSLVTKLLIQSGKTYY----------------KDG-------------- 297 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD-~~~~ES~~~~~~~i~~~i~~L~~~g~~~~----------------~~G-------------- 297 (582)
+.+.+.++|++||+.+| ..+..|+.. ....+.++.|.++|.+|. ..|
T Consensus 52 ~~~~i~~~L~wlGl~~D~~~~~QS~r~--~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~ 129 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWDYGPYYQSDRL--EIYQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCREL 129 (314)
T ss_dssp HHHHHHHHHHHHT---STCEEEGGGGH--HHHHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCH
T ss_pred HHHHHHhheeEEEEecCCeEEeHHHHH--HHHHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhh
Confidence 34567888999999998 444456432 467889999999999984 011
Q ss_pred -------------cEEEEec--cC----------C-------CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEE
Q psy5226 298 -------------ALWLRTT--DY----------G-------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINI 345 (582)
Q Consensus 298 -------------a~~~~~~--~~----------g-------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V 345 (582)
..++++. .- | +..|.|+.|+||.++|. +|...+....+.+++ |
T Consensus 130 ~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r~dg~ptY~---fA~vVDD~~~gITHV--i 204 (314)
T PF00749_consen 130 TEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRRSDGYPTYH---FAVVVDDHLMGITHV--I 204 (314)
T ss_dssp HHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEESTTSEB-HH---HHHHHHHHHTT-SEE--E
T ss_pred hHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccCCchhccccccCcccc---cceeecccccccCeE--E
Confidence 1112221 10 0 11467999999999996 667777776677788 8
Q ss_pred EecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcc-cHHHHHHHHHhh-------hhcCC
Q psy5226 346 QGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYI-TIRNLIKWLSKT-------ESKND 417 (582)
Q Consensus 346 ~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v-~l~dll~~~~~~-------~~~~~ 417 (582)
.|.||.....+...+.+++ |+++| .+.|++.+ ++.+|+ |+|||+|... .+.++.+...-. ....-
T Consensus 205 RG~D~l~~t~~Q~~L~~~L--g~~~P--~~~H~pl~-l~~~g~--kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~ 277 (314)
T PF00749_consen 205 RGEDLLSSTPRQILLYEAL--GWPPP--PYAHLPLI-LNEDGK--KLSKRKGAKSIELGDYREWGDPPEATLNYLARLGW 277 (314)
T ss_dssp EEGGGTTCHHHHHHHHHHC--TSSS---EEEEEEEE-EETTSS--BSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB
T ss_pred EccccccccHHHHHHHHHh--CCCCc--ceEeeeee-ecCCCc--EechhhccccccccccccCCCCHHHHHHHHHHhcC
Confidence 9999998888778888999 99865 67777766 566788 9999999753 244544433110 11111
Q ss_pred ChhhHhhhhcchhhHHHHHhccCCCCcccccHHHH
Q psy5226 418 SIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLA 452 (582)
Q Consensus 418 ~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~ 452 (582)
+.....++..-.+.++.|+++....++..||.+++
T Consensus 278 ~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~kL 312 (314)
T PF00749_consen 278 SPEAIREFFSLDELIKQFDLSKISKSPAVFDRKKL 312 (314)
T ss_dssp -HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHHHH
T ss_pred CcchhhhhcCHHHHHHHhhHhhccCchHHhCHHHh
Confidence 21122222334566677777777778888887765
No 79
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.53 E-value=8.3e-14 Score=135.82 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhh
Q psy5226 249 LRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSD 327 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~D 327 (582)
+.+.+.+++++||+.+|. -...|+. .+...+.+++|.++| |.++|.
T Consensus 52 ~~~~I~~dL~wlGl~wd~~~~~QS~r--~~~y~~~~~~L~~~g----------------------------g~p~Y~--- 98 (230)
T cd00418 52 YVESILEDLKWLGLDWDEGPYRQSDR--FDLYRAYAEELIKKG----------------------------GYPLYN--- 98 (230)
T ss_pred HHHHHHHHHHHcCCCCCCCeeehhcC--HHHHHHHHHHHHHcC----------------------------CCcccc---
Confidence 345678899999999996 4445542 246788889998887 555554
Q ss_pred HHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHH
Q psy5226 328 IAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIK 407 (582)
Q Consensus 328 iA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~ 407 (582)
+|...+....+.+++ |.|.||.....+...+.+++ |++.| .+.|++.+. ..+|+ |||||+|+ .++.++.+
T Consensus 99 la~vvDD~~~gIThV--iRG~D~l~st~~q~~l~~~L--g~~~P--~~~H~pll~-~~~g~--KLSKr~~~-~~i~~~r~ 168 (230)
T cd00418 99 FVHPVDDALMGITHV--LRGEDHLDNTPIQDWLYEAL--GWEPP--RFYHFPRLL-LEDGT--KLSKRKLN-TTLRALRR 168 (230)
T ss_pred ccccccccccCCCEE--EECHhhhhchHHHHHHHHHc--CCCCC--eEEEeeeee-CCCCC--CccCcCCC-cCHHHHHH
Confidence 455555555556677 89999998888888888999 99766 678899884 35677 99999998 58888765
Q ss_pred HHHhh-------hhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhh
Q psy5226 408 WLSKT-------ESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALK 454 (582)
Q Consensus 408 ~~~~~-------~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~ 454 (582)
+.... ..-.-+.....++.--.+++..|.+..-..++..||++++..
T Consensus 169 ~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~~~~d~~kL~~ 222 (230)
T cd00418 169 RGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSADATFDWAKLEW 222 (230)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCCcccCHHHHHH
Confidence 43210 000000000001111223555566666666777777777665
No 80
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.46 E-value=4.9e-13 Score=133.99 Aligned_cols=140 Identities=24% Similarity=0.378 Sum_probs=99.2
Q ss_pred HHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeee----------e--------CCcE-----------
Q psy5226 250 RREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYY----------K--------DGAL----------- 299 (582)
Q Consensus 250 ~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~----------~--------~Ga~----------- 299 (582)
.+.+.+++++||+.+|. ....|+.. +...++++.|.++|.+|. . +|.+
T Consensus 52 ~~~I~~dL~wLGl~wDe~~~~QS~r~--~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~ 129 (272)
T TIGR03838 52 ADDILRTLEAYGLHWDGEVVYQSQRH--ALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARP 129 (272)
T ss_pred HHHHHHHHHHcCCCCCCCeeeeeCCH--HHHHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCC
Confidence 45578889999999994 23455432 567889999999999983 0 1110
Q ss_pred -E--EEecc----C-----C--------CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHH
Q psy5226 300 -W--LRTTD----Y-----G--------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKA 359 (582)
Q Consensus 300 -~--~~~~~----~-----g--------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~ 359 (582)
. ++..+ + | ...|.||.|+||.++|. +|...+....+.+++ |.|.||.....+...
T Consensus 130 ~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~---fA~vVDD~~~gIThV--iRG~D~l~~t~~q~~ 204 (272)
T TIGR03838 130 AAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQ---LAVVVDDAAQGITHV--VRGADLLDSTPRQIY 204 (272)
T ss_pred ceEEEecCCCCceEEEeeeeEEEecCcccCCCEEEEecCCCcccc---ChhhhhcccCCCCEE--EeCHhhhhccHHHHH
Confidence 1 11111 0 0 11457999999999996 556666665566777 899999988887788
Q ss_pred HHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 360 GLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 360 ~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
+.+++ |++.| .+.|++.+ ++.+|+ |||||+|.. ++++
T Consensus 205 l~~aL--g~~~P--~y~H~pll-~~~~g~--kLSKR~~~~-~i~~ 241 (272)
T TIGR03838 205 LQRLL--GLPPP--RYLHLPLV-VNADGE--KLSKQNGAP-ALDL 241 (272)
T ss_pred HHHHh--CCCCC--eEEechhh-hCCCCC--eeeccCCcc-chhc
Confidence 88999 99876 67888887 445787 999999874 4444
No 81
>KOG0432|consensus
Probab=99.43 E-value=8e-11 Score=129.54 Aligned_cols=137 Identities=23% Similarity=0.253 Sum_probs=88.4
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
++...+|--.-||++|.+||||+-+..|-|+|+|+.|..||+|..+=..+-.|-..-.+. .++....+
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VV----EK~l~~~~-------- 140 (995)
T KOG0432|consen 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVV----EKQLAREG-------- 140 (995)
T ss_pred CCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHH----HHHHHHhc--------
Confidence 455566767889999999999999999999999999999999998887777773221111 11110000
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccccccccc---CC
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYK---TG 277 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~---~~ 277 (582)
|.. ++ +.|-.+..+..|+|= +++-..+.+.+++||-++| |.+|--... +.
T Consensus 141 ---~~~----------Rh------------~lgRe~F~~~vw~Wk-~e~g~~I~~Qlk~lGas~D-W~re~fTmD~~~s~ 193 (995)
T KOG0432|consen 141 ---GKT----------RH------------DLGREEFLKEVWEWK-EEYGGRIYNQLKRLGASLD-WDREAFTMDPKLSR 193 (995)
T ss_pred ---Ccc----------hh------------hcCHHHHHHHHHHHH-HHhCccHHHHHHHhcCccc-ccHhhcccCHHHHH
Confidence 000 00 111112222233332 5556778889999999998 666652222 22
Q ss_pred ChHHHHHHHHHcCCeeeeC
Q psy5226 278 KVSLVTKLLIQSGKTYYKD 296 (582)
Q Consensus 278 ~i~~~i~~L~~~g~~~~~~ 296 (582)
.+.+.+-+|.+.|++|+..
T Consensus 194 AV~eAFvrL~eeglIyR~~ 212 (995)
T KOG0432|consen 194 AVTEAFVRLHEEGLIYRAN 212 (995)
T ss_pred HHHHHHHHHHhcCceEecC
Confidence 4667778899999998643
No 82
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.6e-12 Score=139.29 Aligned_cols=190 Identities=21% Similarity=0.234 Sum_probs=127.2
Q ss_pred HHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeee----------------eCC---cEE---------
Q psy5226 250 RREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYY----------------KDG---ALW--------- 300 (582)
Q Consensus 250 ~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~----------------~~G---a~~--------- 300 (582)
.+.+.++|++||++.|. ..+.|+.. +...++++.|.++|.+|. ..| ..+
T Consensus 61 ~~~I~~~L~WLGl~wde~~~~QS~r~--~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~ 138 (472)
T COG0008 61 EDAILEDLEWLGLDWDEGPYYQSERF--DIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTL 138 (472)
T ss_pred HHHHHHHHHhcCCCCCCceeehhhhH--HHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccch
Confidence 35568889999999997 45667543 567899999999999984 011 111
Q ss_pred --------------E--Eec--cCC----C--------C--cce-EEEccCCccccchhhHHHHHhhhhcCCceEEEEEe
Q psy5226 301 --------------L--RTT--DYG----D--------D--KDR-VVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQG 347 (582)
Q Consensus 301 --------------~--~~~--~~g----~--------~--~~~-vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g 347 (582)
+ +.+ .-+ | . ... |+.|+||.++|. +|-..+....+-.++ +.|
T Consensus 139 ~~~~~~~~~~~~~viR~k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~---favvvDD~~mgITHv--iRG 213 (472)
T COG0008 139 FEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYN---FAVVVDDHLMGITHV--LRG 213 (472)
T ss_pred HHHHhhcccCCCeEEEEeCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccc---eeeeechhhcCCceE--Eec
Confidence 1 111 000 0 0 122 889999999996 344444444456677 789
Q ss_pred cCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh------hhh-cCCCh-
Q psy5226 348 DDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK------TES-KNDSI- 419 (582)
Q Consensus 348 ~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~------~~~-~~~~~- 419 (582)
.||.....+...+.+++ |++.| .+.|++.+.. .+|+ |||||+| .+.+.++...... ... ...+.
T Consensus 214 ~d~~~nt~~q~~l~~~l--g~~~P--~~~H~~li~~-~~g~--kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~ 285 (472)
T COG0008 214 EDHLDNTPRQIWLYEAL--GWPPP--VYAHLPLLLN-EDGK--KLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYP 285 (472)
T ss_pred hhhccCCHHHHHHHHHc--CCCCC--cEEEeeeeec-CCCC--eecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCC
Confidence 99998888888888999 99876 6789999966 7787 9999999 6677665444321 011 11111
Q ss_pred hhHhhhhcchhhHHHHHhccCCCCcccccHHHHhh
Q psy5226 420 EFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALK 454 (582)
Q Consensus 420 ~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~ 454 (582)
.+..++..-...+..|++.....+...||++++..
T Consensus 286 ~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~ 320 (472)
T COG0008 286 PEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDW 320 (472)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHh
Confidence 12222222445667788888889999999999876
No 83
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.40 E-value=2.2e-12 Score=125.88 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhhH
Q psy5226 249 LRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDI 328 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~Di 328 (582)
+.+.+.+++++||+.+|.....|+. .+...++++.|.++|.+|... .-++ +.++ .++| ++
T Consensus 52 ~~~~I~~dL~wlGl~wD~~~~QS~r--~~~Y~~~~~~L~~~g~aY~~~--------~~~~--~~~i-----~ptY---~l 111 (238)
T cd00807 52 YVDSIKEDVKWLGIKPYKVTYASDY--FDQLYEYAEQLIKKGKAYVHH--------RTGD--KWCI-----YPTY---DF 111 (238)
T ss_pred HHHHHHHHHHHcCCCCCCceecccC--HHHHHHHHHHHHHcCCeecCC--------CCCC--CEEE-----Eecc---cc
Confidence 3456788999999999965556642 256789999999999999710 0011 1122 2444 45
Q ss_pred HHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc------c--
Q psy5226 329 AYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY------I-- 400 (582)
Q Consensus 329 A~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~------v-- 400 (582)
|...+....+.+++ |.|.||.....+...+.+++ |++.| .+.+++++ +.+|+ |||||.|.. +
T Consensus 112 A~vVDD~~~gIThV--vRG~D~l~~t~~Q~~l~~aL--g~~~P--~~~~~~hl--n~~g~--kLSKR~~~~~i~~g~~~~ 181 (238)
T cd00807 112 AHPIVDSIEGITHS--LCTLEFEDRRPSYYWLCDAL--RLYRP--HQWEFSRL--NLTYT--VMSKRKLLQLVDEGYVDG 181 (238)
T ss_pred ceEeeccccCCCeE--EechhhhcCCHHHHHHHHHc--CCCCC--ceeEEEEE--CCCCC--CccCcCchhccccCCccc
Confidence 55565555566677 89999998777777788999 99776 34455554 55787 999999642 1
Q ss_pred -------cHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHHHhh
Q psy5226 401 -------TIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDLALK 454 (582)
Q Consensus 401 -------~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~~~ 454 (582)
++..+.... +-++|++-|+... -..++..|||+++.+
T Consensus 182 wddpr~~~~~~l~~~G-----------------~~peal~~~l~~lG~s~~~~~~~~~~l~~ 226 (238)
T cd00807 182 WDDPRLPTLRGLRRRG-----------------VTPEAIRQFILRQGVSKADSTIDWDKLEA 226 (238)
T ss_pred ccCcchHHHHHHHHcC-----------------CCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 222222221 2578888777765 447999999999876
No 84
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.38 E-value=5.3e-12 Score=127.94 Aligned_cols=140 Identities=24% Similarity=0.349 Sum_probs=99.9
Q ss_pred HHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeee-----------e----------CCcE--------
Q psy5226 250 RREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYY-----------K----------DGAL-------- 299 (582)
Q Consensus 250 ~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~-----------~----------~Ga~-------- 299 (582)
.+.+.++|++||+.+|. -+..|+. .+...++++.|.++|.+|. . +|.+
T Consensus 57 ~~~I~~dL~wlGl~wDe~~~~QS~r--~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~ 134 (299)
T PRK05710 57 ADAILADLEWLGLHWDGPVLYQSQR--HDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR 134 (299)
T ss_pred HHHHHHHHHHCCCCCCCCceEeecc--HHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc
Confidence 45567889999999994 3335542 2567899999999999983 0 1110
Q ss_pred ---E--EEecc---------CC--------CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHH
Q psy5226 300 ---W--LRTTD---------YG--------DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRV 357 (582)
Q Consensus 300 ---~--~~~~~---------~g--------~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~ 357 (582)
. ++.++ .| ...|.||.|+||.++|. +|...+....+.+++ |.|.||.....+.
T Consensus 135 ~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg~ptY~---lA~vVDD~~~gIThV--vRG~D~l~~t~~Q 209 (299)
T PRK05710 135 NPPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADGLFAYQ---LAVVVDDALQGVTHV--VRGADLLDSTPRQ 209 (299)
T ss_pred CCceEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecCCCcccc---chhHHhcccCCCCEE--EeChhhhhcCHHH
Confidence 1 12210 01 12467999999999997 566676666667777 8999999877777
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 358 KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 358 ~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
..+.+++ |+++| .+.|++.+ +..+|+ |||||.|.. .+++
T Consensus 210 ~~l~~aL--g~~~P--~y~H~pll-~~~~g~--kLSKr~~~~-~i~~ 248 (299)
T PRK05710 210 IYLQQLL--GLPTP--RYLHLPLV-LNADGQ--KLSKQNGAP-ALDA 248 (299)
T ss_pred HHHHHHc--CCCCC--eEEEeecc-cCCCCC--cccccCCcc-chhh
Confidence 7788999 99876 78888887 445787 999999874 4544
No 85
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.37 E-value=1.1e-11 Score=133.62 Aligned_cols=178 Identities=21% Similarity=0.229 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeee------------C-------------------
Q psy5226 248 YLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYK------------D------------------- 296 (582)
Q Consensus 248 ~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~------------~------------------- 296 (582)
.+.+.+.+++++||+.+|..+..|+.. +...+..+.|.++|.+|.- .
T Consensus 61 e~~~~I~~dL~WLGl~wD~~~~qSdr~--~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~ 138 (523)
T PLN03233 61 EFEESIIEDLGKIEIKPDSVSFTSDYF--EPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFK 138 (523)
T ss_pred HHHHHHHHHHHHhCCCCCCCccccccH--HHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHH
Confidence 344667889999999999766667543 5678899999999999840 0
Q ss_pred ---------CcEEEEecc-C----CCCcceEEEccCCcc---------ccchhhHHHHHhhhhcCCceEEEEEecCcchh
Q psy5226 297 ---------GALWLRTTD-Y----GDDKDRVVRKSNGDF---------TYFVSDIAYHIFKWERGFIQAINIQGDDHQGT 353 (582)
Q Consensus 297 ---------Ga~~~~~~~-~----g~~~~~vl~ksDG~~---------~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~ 353 (582)
|..+++..- . ..-.|.|+.|+||++ .|.|=|+|...+....+.+++ |.|.||...
T Consensus 139 ~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHv--iRg~E~~~~ 216 (523)
T PLN03233 139 EMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHA--LRTTEYDDR 216 (523)
T ss_pred HHhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeE--EechhhhcC
Confidence 112222110 0 011356889999763 233334555555444455666 789999988
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC-------CCcc--------cHHHHHHHHHhhhhcCCC
Q psy5226 354 ITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS-------GSYI--------TIRNLIKWLSKTESKNDS 418 (582)
Q Consensus 354 ~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-------G~~v--------~l~dll~~~~~~~~~~~~ 418 (582)
..+...+++++ |+..| .+.| |+.++..|. |||||+ |.+- |+..+...+
T Consensus 217 t~~q~~l~~aL--g~~~P--~~~~--f~rln~~~~--kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG--------- 279 (523)
T PLN03233 217 DAQFFWIQKAL--GLRRP--RIHA--FARMNFMNT--VLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRG--------- 279 (523)
T ss_pred CHHHHHHHHHh--CCCCC--eeee--eEEECCCCC--cccccCchhhhccCcccCccCCchHhHHHHHHCC---------
Confidence 77777888999 99766 3333 555665777 999997 3321 345544443
Q ss_pred hhhHhhhhcchhhHHHHHhccC-CCCcccccHHHHhh
Q psy5226 419 IEFREDLIRGRDLMRFFLISRK-SDTDFIFDIDLALK 454 (582)
Q Consensus 419 ~~~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~~~~ 454 (582)
+-++|||=|+++.- ..++..++|+.+-+
T Consensus 280 --------~~peAi~~f~~~~G~s~~~~~i~~~~l~~ 308 (523)
T PLN03233 280 --------IDIDALKMFMCSQGASRRVVNLDWAKFWA 308 (523)
T ss_pred --------CCHHHHHHHHHHhCCCCCCceecHHHHHH
Confidence 37899998888764 36788999998866
No 86
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.29 E-value=8e-11 Score=128.40 Aligned_cols=230 Identities=23% Similarity=0.291 Sum_probs=145.1
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
.+|+.=| .|+|+|+|||||+|++++-+.+||- |+...+--++|...
T Consensus 92 ~~vvtRF-aPsPtG~LHiGharaalln~~~Ar~-----~~G~~iLRidDTDp---------------------------- 137 (560)
T TIGR00463 92 GEVVMRF-APNPSGPLHIGHARAAILNQYFAKK-----YKGKLIIRFDDTDP---------------------------- 137 (560)
T ss_pred CeeEEEe-CCCCCCCccHHHHHHHHHHHHHHHh-----cCCEEEEEeCcCCc----------------------------
Confidence 3465544 6999999999999999999988862 33333333333110
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
.... ..+.+.+.+++++||+.+|.....|+.. +.+.++
T Consensus 138 ----------------------------~R~~------------~e~~~~I~edL~wLGi~~d~~~~qSd~~--~~y~~~ 175 (560)
T TIGR00463 138 ----------------------------RRVK------------PEAYDMILEDLDWLGVKGDEVVYQSDRI--EEYYDY 175 (560)
T ss_pred ----------------------------cccc------------HHHHHHHHHHHHHcCCCCCccccccccH--HHHHHH
Confidence 0011 2234567889999999999888788643 567889
Q ss_pred HHHHHHcCCeeee------------CC----------------------------cEEEEecc-C----CCCcceEEEcc
Q psy5226 283 TKLLIQSGKTYYK------------DG----------------------------ALWLRTTD-Y----GDDKDRVVRKS 317 (582)
Q Consensus 283 i~~L~~~g~~~~~------------~G----------------------------a~~~~~~~-~----g~~~~~vl~ks 317 (582)
++.|+++|.+|.- +| ..++++.- . ..-.|.|+.|.
T Consensus 176 a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~ 255 (560)
T TIGR00463 176 CRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRI 255 (560)
T ss_pred HHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEe
Confidence 9999999999840 11 11222210 0 00124567777
Q ss_pred CCccc---------cchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCe
Q psy5226 318 NGDFT---------YFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGK 388 (582)
Q Consensus 318 DG~~~---------Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~ 388 (582)
++++- |.|=|+|...+....+.+++ |.|.||.....+......++ |+..| .+.|++++.+. +|.
T Consensus 256 ~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHv--iRg~E~~~nT~rq~yl~~~l--g~~~P--~~~h~~~l~~~-~~~ 328 (560)
T TIGR00463 256 NKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHV--LRGKDHIDNERKQQYIYMYF--GWELP--EFIHWGRLKIN-DVR 328 (560)
T ss_pred cCCCccccCCEEEEEeccccceEeecccCCCCeE--EechhhhcCCHHHHHHHHHc--CCCCC--eEEEEcceecC-CCc
Confidence 65432 44445555554444455555 67888876444445555777 88765 78899998764 555
Q ss_pred eeecccCCCC-------c--------ccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccC-CCCcccccHHHH
Q psy5226 389 EVKISKRSGS-------Y--------ITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRK-SDTDFIFDIDLA 452 (582)
Q Consensus 389 ~~KMSkr~G~-------~--------v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~~ 452 (582)
|+|||+.- + .++..+...+ +.++|||-|+++.- ..++..++|+.+
T Consensus 329 --kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG-----------------~~peAi~~f~~~~G~s~~~~~i~~~~l 389 (560)
T TIGR00463 329 --TLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRG-----------------ITPEAIRNFMLSIGVKRNDVNLSWKNI 389 (560)
T ss_pred --EecchhhhhhhhccCccCcCCccHHHHHHHHHCC-----------------CCHHHHHHHHHHhCCCCCCceeeHHHH
Confidence 89987732 1 1233332222 36899999988874 368889999988
Q ss_pred hh
Q psy5226 453 LK 454 (582)
Q Consensus 453 ~~ 454 (582)
-+
T Consensus 390 ~~ 391 (560)
T TIGR00463 390 YA 391 (560)
T ss_pred HH
Confidence 66
No 87
>PLN02907 glutamate-tRNA ligase
Probab=99.28 E-value=6.8e-11 Score=133.60 Aligned_cols=241 Identities=17% Similarity=0.209 Sum_probs=145.1
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
.+|+.=| .|+|+|+|||||+|++++...+||- +-|-=+.| ++|
T Consensus 212 ~~v~tRF-aPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR---~eD------------------------------- 254 (722)
T PLN02907 212 GKVCTRF-PPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVR---FDD------------------------------- 254 (722)
T ss_pred CceEEee-CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ecC-------------------------------
Confidence 3565544 6999999999999999999999883 33432222 111
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
.||+ .. ...+.+.+.+++++||+.+|..+..|+.. +...+.
T Consensus 255 ------------------------------Tdp~---r~----~~e~~~~I~~dl~wLG~~~d~~~~qS~r~--~~y~~~ 295 (722)
T PLN02907 255 ------------------------------TNPS---KE----SDEFVENILKDIETLGIKYDAVTYTSDYF--PQLMEM 295 (722)
T ss_pred ------------------------------CCCC---cC----ChHHHHHHHHHHHHcCCCCCCcccccccH--HHHHHH
Confidence 1110 00 13344667889999999999776677543 567889
Q ss_pred HHHHHHcCCeeee------------C----------------------------CcEEEEecc---C--CCCcceEEEcc
Q psy5226 283 TKLLIQSGKTYYK------------D----------------------------GALWLRTTD---Y--GDDKDRVVRKS 317 (582)
Q Consensus 283 i~~L~~~g~~~~~------------~----------------------------Ga~~~~~~~---~--g~~~~~vl~ks 317 (582)
.++|+++|.+|.. + |..+++..- . ..-.|.|+.|.
T Consensus 296 a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~ 375 (722)
T PLN02907 296 AEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRC 375 (722)
T ss_pred HHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEe
Confidence 9999999999841 0 111222111 0 01125678888
Q ss_pred CCccc---------cchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCe
Q psy5226 318 NGDFT---------YFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGK 388 (582)
Q Consensus 318 DG~~~---------Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~ 388 (582)
||++- |.|=|+|...+....+-.++ +.|.||.....+...++++| |+..+ ...+++++ +.+|.
T Consensus 376 ~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThv--lRg~e~~~~t~~q~~l~~~l--g~~~p--~~~~f~~l--~~~~~ 447 (722)
T PLN02907 376 NPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHA--LRSSEYHDRNAQYYRILEDM--GLRKV--HIWEFSRL--NFVYT 447 (722)
T ss_pred cCCcccccCCccceeeccCCceEEEcccCCCceE--eecHhhhhChHHHHHHHHHc--CCCCC--eeEEEEEE--cCCCc
Confidence 87432 22323444443333344555 67899988877777788999 98765 44455554 44676
Q ss_pred eeecccCCCCcccHHHHHHHHHhhh---hcCCChhhHhhhhcchhhHHHHHhccC-CCCcccccHHHHhh
Q psy5226 389 EVKISKRSGSYITIRNLIKWLSKTE---SKNDSIEFREDLIRGRDLMRFFLISRK-SDTDFIFDIDLALK 454 (582)
Q Consensus 389 ~~KMSkr~G~~v~l~dll~~~~~~~---~~~~~~~~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~~~~ 454 (582)
+||||+ +..++++..-.. -+-+.+..--.-.+.+++++=|++... ..++..|||+++..
T Consensus 448 --~lSKR~-----l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~ 510 (722)
T PLN02907 448 --LLSKRK-----LQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT 510 (722)
T ss_pred --cccccc-----hHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHH
Confidence 999998 334443321000 000001100011136888887777664 46889999999877
No 88
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.27 E-value=1.7e-10 Score=134.90 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=116.7
Q ss_pred EEEEecCcch-h--HHHHHHHHHHHHcCC-CCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCC
Q psy5226 343 INIQGDDHQG-T--ITRVKAGLQAINIGI-PNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDS 418 (582)
Q Consensus 343 i~V~g~dh~~-~--~~~~~~~l~~l~~G~-~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~ 418 (582)
+++.|.||.. | +. ++.....+ +. ++| ..++++||+.. +|+ |||||+||+|++.|+++++
T Consensus 533 ~~~~GkDii~~Hl~~~-~~~~~a~~--~~~~~P-k~v~~hG~vl~--~G~--KMSKS~GNvVdp~eii~~y--------- 595 (897)
T PRK12300 533 WRHSGKDLIPNHLTFF-IFNHVAIF--PEEKWP-RGIVVNGFVLL--EGK--KMSKSKGNVIPLRKAIEEY--------- 595 (897)
T ss_pred EEEeeeccCccHHHHH-HHHHHHhc--CCCccC-cEEEEcceEEE--CCc--cccCcCCCCCCHHHHHHHc---------
Confidence 6799999852 2 22 22222222 33 233 48889999966 788 9999999999999999999
Q ss_pred hhhHhhhhcchhhHHHHHhcc-CCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCH
Q psy5226 419 IEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTE 497 (582)
Q Consensus 419 ~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~ 497 (582)
|.|++||++++. ...+|.+|+++.+.+. +.. +.|+.++.++......+ . .+ .+
T Consensus 596 ---------GaDalRl~L~~~~~~~~D~~fs~~~v~~~-----~~~----l~r~~~~~~~~~~~~~~----~---~~-~~ 649 (897)
T PRK12300 596 ---------GADVVRLYLTSSAELLQDADWREKEVESV-----RRQ----LERFYELAKELIEIGGE----E---EL-RF 649 (897)
T ss_pred ---------ChHHHHHHHHhCCCCCCCCccCHHHHHHH-----HHH----HHHHHHHHHHHhcCCCc----c---cc-CH
Confidence 999999999985 6689999999987552 222 35777777765322111 0 12 34
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhchHHHHHHHH-HHHHHHHhhhhcc
Q psy5226 498 KELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLR-DLAKELHGYYNTE 543 (582)
Q Consensus 498 ~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~-~La~~~n~fy~~~ 543 (582)
.++.++..+.+..+.+.+++++++++.+++.++ .+...+|.|.+.+
T Consensus 650 ~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~ 696 (897)
T PRK12300 650 IDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRV 696 (897)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456688899999999999999999999998875 7888999887654
No 89
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.26 E-value=1.2e-10 Score=127.01 Aligned_cols=186 Identities=18% Similarity=0.134 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeeee------------CC------------------
Q psy5226 249 LRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYYK------------DG------------------ 297 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~~------------~G------------------ 297 (582)
+.+.+.+++++||+.+|. ....|+.. +...+..+.|+++|.+|.. .|
T Consensus 103 ~~d~IleDL~WLGl~wDe~~~~QSdr~--d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~ 180 (601)
T PTZ00402 103 FEQAILDDLATLGVSWDVGPTYSSDYM--DLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWN 180 (601)
T ss_pred HHHHHHHHHHHCCCCCCCceeeccccH--HHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 446678899999999985 44456433 5678889999999999830 11
Q ss_pred ----------cEEEEecc-C----CCCcceEEEccC------------CccccchhhHHHHHhhhhcCCceEEEEEecCc
Q psy5226 298 ----------ALWLRTTD-Y----GDDKDRVVRKSN------------GDFTYFVSDIAYHIFKWERGFIQAINIQGDDH 350 (582)
Q Consensus 298 ----------a~~~~~~~-~----g~~~~~vl~ksD------------G~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh 350 (582)
..+++..- . ..-.|.|+.|.+ |-++| |+|...+....+.+++ |.|.||
T Consensus 181 ~m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtY---dfA~vVDD~l~gITHv--lRg~E~ 255 (601)
T PTZ00402 181 EMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTY---DFCCPIIDSVEGVTHA--LRTNEY 255 (601)
T ss_pred hccccccCCCceEEEEecccCCCCCCccCCEEEEEcCCcccccCCCCceeecc---CcceeeEccccCCceE--eechhh
Confidence 11111100 0 001244666644 33333 3444444443445565 778999
Q ss_pred chhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhh---hcCCChhhHhhhhc
Q psy5226 351 QGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTE---SKNDSIEFREDLIR 427 (582)
Q Consensus 351 ~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~---~~~~~~~~~~~~~~ 427 (582)
.....+...++++| |+.+| .+.|++. ++.+|. |||||++. .++++..-.. .+.+.+..--.-.+
T Consensus 256 l~~tp~q~~L~~aL--g~~~P--~~~h~~r--Ln~~g~--kLSKRkl~-----~lv~~g~v~GWdDprlpTi~glrRrG~ 322 (601)
T PTZ00402 256 HDRNDQYYWFCDAL--GIRKP--IVEDFSR--LNMEYS--VMSKRKLT-----QLVDTHVVDGWDDPRFPTVRALVRRGL 322 (601)
T ss_pred hhCcHHHHHHHHHh--CCCCc--eEEEEee--EcCCCC--cccccCCh-----hhhhcCcccccCCCccHhHHHHHHcCC
Confidence 88877777788999 99766 6778885 445777 99999973 3444321000 00011110000113
Q ss_pred chhhHHHHHhcc-CCCCcccccHHHHhh
Q psy5226 428 GRDLMRFFLISR-KSDTDFIFDIDLALK 454 (582)
Q Consensus 428 ~~~airy~~l~~-~~~~~~~F~~~~~~~ 454 (582)
.++++|=|+... ...++..|||+.+..
T Consensus 323 ~peai~~f~~~~Gvsk~~~~~d~~~L~~ 350 (601)
T PTZ00402 323 KMEALRQFVQEQGMSKTVNFMEWSKLWY 350 (601)
T ss_pred CHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 677777665554 557899999999877
No 90
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=7.1e-11 Score=134.35 Aligned_cols=198 Identities=18% Similarity=0.222 Sum_probs=134.9
Q ss_pred EEEEecCcc-hhHHHH-HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRV-KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~-~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+|.-|+||+ +||..+ ..+.... |..|- ..++.|||+ +.++|+ |||||.||+|.+.|+++++
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~--~~aPY-k~vltHGfv-lDe~Gr--KMSKSlGN~v~P~~V~~~y----------- 620 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALF--GRAPY-KNVLTHGFV-LDEKGR--KMSKSLGNVVDPQDVIDKY----------- 620 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHc--CCchH-HHHhhcccE-ECCCCC--CccccCCCcCCHHHHHHhh-----------
Confidence 567788877 677443 3333444 65544 478889998 666777 9999999999999999999
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhc--CCCCCccccc-ccCCCCCCH
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQW--GGDKKSLISI-KDLSSLNTE 497 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~--~~~~~~~~~~-~d~~~l~~~ 497 (582)
|.|++|+++++..+..|+.|+++.+.+ ... +|.|+...+|=. .-.+..+... .....+ .+
T Consensus 621 -------GADiLRLwv~ssd~~~dl~~s~~il~~-~~~--------~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~-~~ 683 (933)
T COG0060 621 -------GADILRLWVASSDYWEDLRFSDEILKQ-VRE--------VYRKIRNTYRFLLGNLDDFDPKKDAVLPEEL-RE 683 (933)
T ss_pred -------CchheeeeeeecCchhccccCHHHHHH-HHH--------HHHHHHHHHHHHHHhccCCCccccccchhhc-ch
Confidence 999999999999999999999998544 321 122333322211 0111110000 011112 23
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHH-HHHHhhhhcc---cccCCChhhhHHHHHHHHHHHHHHHHHHHh
Q psy5226 498 KELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLA-KELHGYYNTE---RILVKNITIKMARLALIYSIGQVLNNGLKL 573 (582)
Q Consensus 498 ~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La-~~~n~fy~~~---~vl~~~~~~~~~RL~L~~a~~~vL~~~L~l 573 (582)
.++=++..+..+-..+.+++++++.|.+++.|.+.+ ..+++||=+. +...+ .+....|.+...+...+|.....+
T Consensus 684 ~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~-~~~s~~rraa~~~Ly~il~~l~~~ 762 (933)
T COG0060 684 LDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTE-AADSPDRRAAQTTLYHILKALVRL 762 (933)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355577788889999999999999999999999988 9999999542 23221 122456677777777777777776
Q ss_pred cC
Q psy5226 574 IG 575 (582)
Q Consensus 574 LG 575 (582)
|.
T Consensus 763 lA 764 (933)
T COG0060 763 LA 764 (933)
T ss_pred Hc
Confidence 64
No 91
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.21 E-value=5.8e-10 Score=120.86 Aligned_cols=177 Identities=19% Similarity=0.176 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhhCCccc-ccccccccccCCChHHHHHHHHHcCCeeee----------------CC--------------
Q psy5226 249 LRREQDIDLKIFGVKFD-NYCLESSLYKTGKVSLVTKLLIQSGKTYYK----------------DG-------------- 297 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD-~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~----------------~G-------------- 297 (582)
+.+.+.+++++||+.+| .....|+.. +...+..+.|.++|.+|.- .|
T Consensus 80 ~~~~I~~dL~wLGi~~d~~~~~qS~r~--~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl 157 (554)
T PRK05347 80 YVDSIKEDVRWLGFDWSGELRYASDYF--DQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENL 157 (554)
T ss_pred HHHHHHHHHHHcCCCCCCCceeeecCH--HHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHH
Confidence 34556788999999985 333345322 3355677889999988840 01
Q ss_pred --------------cEEEEecc---CCC--CcceEEEccC-------Cc--cccchhhHHHHHhhhhcCCceEEEEEecC
Q psy5226 298 --------------ALWLRTTD---YGD--DKDRVVRKSN-------GD--FTYFVSDIAYHIFKWERGFIQAINIQGDD 349 (582)
Q Consensus 298 --------------a~~~~~~~---~g~--~~~~vl~ksD-------G~--~~Y~~~DiA~~~~r~~~~~d~~i~V~g~d 349 (582)
..+++..- ... -.|.|+.|++ |+ ..|.|=|+|......-.+.+++ +.|.+
T Consensus 158 ~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHv--lRg~E 235 (554)
T PRK05347 158 DLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHS--LCTLE 235 (554)
T ss_pred HHHHHHHCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceE--Eeccc
Confidence 11221110 000 1245777763 51 1133445555555444455565 67889
Q ss_pred cchhHHHHHHHHHHHHcCCC-CCCCcEEEEEEEEEeeCCeeeecccCCCC-------c--------ccHHHHHHHHHhhh
Q psy5226 350 HQGTITRVKAGLQAINIGIP-NDYPNYILHKMVTVIKNGKEVKISKRSGS-------Y--------ITIRNLIKWLSKTE 413 (582)
Q Consensus 350 h~~~~~~~~~~l~~l~~G~~-~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-------~--------v~l~dll~~~~~~~ 413 (582)
|..+..+...+++++ |+. .| ...++++ ++.+|. |||||++. + .|+..+.+.+
T Consensus 236 ~~~~t~~~~~i~~al--g~~~~P--~~~~F~r--ln~~~~--~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG---- 303 (554)
T PRK05347 236 FEDHRPLYDWVLDNL--PIPPHP--RQYEFSR--LNLTYT--VMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRG---- 303 (554)
T ss_pred cccChHHHHHHHHHc--CCCCCC--ceEEEEE--ECCCCC--ccccccchhccccCcccCccCCcchhHHHHHHCC----
Confidence 988877777788999 864 33 3334444 444777 99999965 2 1566666654
Q ss_pred hcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhh
Q psy5226 414 SKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALK 454 (582)
Q Consensus 414 ~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~ 454 (582)
+-++||+=|++..-. .++..++|+.+-+
T Consensus 304 -------------~~PeAi~nf~~~lG~s~~~~~i~~~~L~~ 332 (554)
T PRK05347 304 -------------YTPESIREFCERIGVTKQDSVIDMSMLES 332 (554)
T ss_pred -------------CCHHHHHHHHHHhCCCCCCCeecHHHHHH
Confidence 278999988887643 6788999999876
No 92
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.13 E-value=2.2e-09 Score=121.22 Aligned_cols=179 Identities=17% Similarity=0.140 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHHcCCeeee----------------CC--------------
Q psy5226 249 LRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQSGKTYYK----------------DG-------------- 297 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~~g~~~~~----------------~G-------------- 297 (582)
+.+.+.+++++||+.+|. .+..|+.. +...+..+.|.++|.+|.- .|
T Consensus 82 ~~~~I~~dl~wLG~~wd~~~~~qS~~~--~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l 159 (771)
T PRK14703 82 YVEAIKDDVRWLGFDWGEHLYYASDYF--ERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENL 159 (771)
T ss_pred HHHHHHHHHHHcCCCCCCCceEeecCH--HHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHH
Confidence 345678889999999874 23455432 4567888899999988840 01
Q ss_pred --------------cEEEEecc-C--C--CCcceEEEccCCccc---------cchhhHHHHHhhhhcCCceEEEEEecC
Q psy5226 298 --------------ALWLRTTD-Y--G--DDKDRVVRKSNGDFT---------YFVSDIAYHIFKWERGFIQAINIQGDD 349 (582)
Q Consensus 298 --------------a~~~~~~~-~--g--~~~~~vl~ksDG~~~---------Y~~~DiA~~~~r~~~~~d~~i~V~g~d 349 (582)
..+++..- . . .-.|.|+.|.++++- |.|=|+|..++..-.+-.++ +.|.|
T Consensus 160 ~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHv--lRg~E 237 (771)
T PRK14703 160 DLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHS--ICTLE 237 (771)
T ss_pred HHHHHHhCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEE--EecHh
Confidence 11222210 0 0 012457777654332 33334444443333344455 67888
Q ss_pred cchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC-------CCcc--------cHHHHHHHHHhhhh
Q psy5226 350 HQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS-------GSYI--------TIRNLIKWLSKTES 414 (582)
Q Consensus 350 h~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-------G~~v--------~l~dll~~~~~~~~ 414 (582)
|.........+++++ |...+.....+++++.+ .|. +||||+ |.+- |+..+...+
T Consensus 238 ~~~~~~~~~~l~~~l--~~~~~~P~~~~f~rl~l--~~~--~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG----- 306 (771)
T PRK14703 238 FENNRAIYDWVLDHL--GPWPPRPRQYEFARLAL--GYT--VMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRG----- 306 (771)
T ss_pred hhhccHHHHHHHHHh--CCCCCCcceeEEEEecc--CCC--cccccCchhccccCcccCCCCCchhhHHHHHHCC-----
Confidence 887766666777888 76432224445666655 566 999998 4431 455554443
Q ss_pred cCCChhhHhhhhcchhhHHHHHhccC-CCCcccccHHHHhh
Q psy5226 415 KNDSIEFREDLIRGRDLMRFFLISRK-SDTDFIFDIDLALK 454 (582)
Q Consensus 415 ~~~~~~~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~~~~ 454 (582)
+-++|||=|++..- ..++..++|+.+-+
T Consensus 307 ------------~~peAi~~f~~~lG~s~~~~~i~~~~L~~ 335 (771)
T PRK14703 307 ------------VTPEAIRDFADQIGVAKTNSTVDIGVLEF 335 (771)
T ss_pred ------------CCHHHHHHHHHHhCCCccCceecHHHHHH
Confidence 37899998887763 35788899998766
No 93
>KOG1149|consensus
Probab=99.09 E-value=3.1e-09 Score=109.06 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=64.1
Q ss_pred CcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCe
Q psy5226 309 DKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGK 388 (582)
Q Consensus 309 ~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~ 388 (582)
..|.|+.||||-|||.. |...+....+..++ +.|.+|..-..+.....+|+ ||.+| ++.|.+.+ ++.||.
T Consensus 211 ~gD~VvmKSDgfPTYHf---AnVVDDh~M~IsHV--iRGeEWlpST~KH~lLYkAf--gW~pP--kFaHlpLl-~n~d~s 280 (524)
T KOG1149|consen 211 EGDPVVMKSDGFPTYHF---ANVVDDHLMGISHV--IRGEEWLPSTLKHILLYKAF--GWQPP--KFAHLPLL-LNPDGS 280 (524)
T ss_pred CCCcEEEecCCCcceee---eeeecchhcchhhe--eecchhccccHHHHHHHHHh--CCCCC--ceeeeeee-ecCCcc
Confidence 35789999999999973 33333332344555 67888776555555667899 99987 78888887 567888
Q ss_pred eeecccCCCCcccHHHHHHHH
Q psy5226 389 EVKISKRSGSYITIRNLIKWL 409 (582)
Q Consensus 389 ~~KMSkr~G~~v~l~dll~~~ 409 (582)
|+|||.|.+ ++.++.+++
T Consensus 281 --KLSKRqgD~-~vs~~~e~G 298 (524)
T KOG1149|consen 281 --KLSKRQGDA-SVSHYREQG 298 (524)
T ss_pred --hhhhhcCcc-hHHHHHHcC
Confidence 999999985 777777664
No 94
>PLN02859 glutamine-tRNA ligase
Probab=99.07 E-value=2.9e-09 Score=119.14 Aligned_cols=103 Identities=12% Similarity=0.019 Sum_probs=65.9
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc---------------ccHHHHHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY---------------ITIRNLIKWL 409 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~---------------v~l~dll~~~ 409 (582)
+.|.+|.....+..-+++++ |+..| .+.|++. ++.+|. +||||++.. .++..+...+
T Consensus 461 LRg~E~~~~~~~y~wl~~aL--g~~~P--~~~~f~r--Ln~~~t--~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG 532 (788)
T PLN02859 461 LCTLEFETRRASYYWLLDSL--GLYQP--YVWEYSR--LNVTNT--VMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRG 532 (788)
T ss_pred eechhhhcCCHHHHHHHHHc--CCCCC--cEEeeee--ECCCCC--cccCcCchhccccCcccCCCCCcchhHHHHHHCC
Confidence 34566665555555677888 98765 5667774 555777 999999764 3555555543
Q ss_pred HhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcc-cccHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q psy5226 410 SKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDF-IFDIDLALKRSDENPVYYIQYAHARIFSLLN 476 (582)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~-~F~~~~~~~~~~~n~~~ylqYa~aR~~silr 476 (582)
+-++||+=|+...-. ..+- .|+|+.+.+ ++- -.|.-+-+|...++.
T Consensus 533 -----------------~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~-~~r---~~l~~~a~R~maV~d 580 (788)
T PLN02859 533 -----------------VTPTAINAFCRGIGITRSDNSLIRMDRLEH-HIR---EELNKTAPRTMVVLH 580 (788)
T ss_pred -----------------CCHHHHHHHHHHhCCCCCCCceecHHHHHh-hCH---HhhCCcCcchheecC
Confidence 378999988877644 3444 799999854 431 123333457666654
No 95
>PLN02563 aminoacyl-tRNA ligase
Probab=99.07 E-value=1e-09 Score=127.81 Aligned_cols=117 Identities=11% Similarity=0.089 Sum_probs=82.4
Q ss_pred ecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226 391 KISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHA 469 (582)
Q Consensus 391 KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~a 469 (582)
|||||+||+|.+.++++++ |.|++|++++...+ ..+..|+.+.+.. ...++ .
T Consensus 723 KMSKSKGNvVdP~eiI~kY------------------GADaLRl~ll~~ap~~dd~~w~~~~V~g-----~~rfL----~ 775 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSEY------------------GADSLRLYEMFMGPLRDSKTWSTSGVEG-----VHRFL----G 775 (963)
T ss_pred ccccccCCcCCHHHHHHHc------------------CcHHHHHHHHhCCCcccccccCHHHHHH-----HHHHH----H
Confidence 9999999999999999999 99999999998765 6677788666533 12344 3
Q ss_pred HHHHHHHhcC--CCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q psy5226 470 RIFSLLNQWG--GDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHG 538 (582)
Q Consensus 470 R~~silrk~~--~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~ 538 (582)
|+-.+..... ..... ....... ...+..++..+.+....+.+++++++.+.+++.+++++...++
T Consensus 776 rlwn~~~~~~~~~~~~~---~~~~~~~-~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~ 842 (963)
T PLN02563 776 RTWRLVVGAPLPDGSFR---DGTVVTD-EEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK 842 (963)
T ss_pred HHHHHHHHhhhcccccC---ccccccC-CcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 4444443321 00000 0000000 1234557888999999999999999999999999999877654
No 96
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.96 E-value=9.8e-09 Score=111.18 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhCCccc-ccccccccccCCChHHHHHHHHHcCCeee
Q psy5226 249 LRREQDIDLKIFGVKFD-NYCLESSLYKTGKVSLVTKLLIQSGKTYY 294 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD-~~~~ES~~~~~~~i~~~i~~L~~~g~~~~ 294 (582)
+.+.+.+++++||+.+| .....|+.. +...+..+.|.++|.+|.
T Consensus 51 ~~~~I~~dL~wLG~~~d~~~~~qS~~~--~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 51 YVESIKRDVEWLGFKWEGKIRYSSDYF--DELYRYAEELIKKGLAYV 95 (522)
T ss_pred HHHHHHHHHHHcCCCCCCCceEccccH--HHHHHHHHHHHHcCCEEe
Confidence 34567888999999995 333445432 446678899999999984
No 97
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.85 E-value=7.7e-08 Score=104.43 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeee
Q psy5226 249 LRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYY 294 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~ 294 (582)
+.+.+.+++++||+.+|.....|+.. ..+.+....|.++|.+|.
T Consensus 102 ~~~~I~~dL~wLGi~~D~~~~qS~y~--~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 102 YIDAIMEMVKWMGWKPDWVTFSSDYF--DQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred HHHHHHHHHHHcCCCCCCCCcCchhH--HHHHHHHHHHHHcCCEEE
Confidence 44667889999999999766566543 234577788999999984
No 98
>KOG0435|consensus
Probab=98.82 E-value=1.3e-08 Score=109.48 Aligned_cols=115 Identities=26% Similarity=0.428 Sum_probs=83.6
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.++++++.. =|+|+|.|||||.|-..|.|++||+.|.+||+|+.-..++-+|.+- +
T Consensus 56 sk~KYiLsM-FPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPA-----------------------E 111 (876)
T KOG0435|consen 56 SKKKYILSM-FPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPA-----------------------E 111 (876)
T ss_pred CCCceEEEe-cCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCch-----------------------h
Confidence 445577744 4999999999999999999999999999999999766666655321 0
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccc-----ccccc
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLE-----SSLYK 275 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~E-----S~~~~ 275 (582)
..| .+ ..-+|..|. ...++.+++.+.+||+.|| |.+| -++|
T Consensus 112 --------NAA---ie--------------rgv~P~sWT-------~~NI~~Mk~Ql~~lg~~FD-WdrEiSTC~PdYY- 157 (876)
T KOG0435|consen 112 --------NAA---IE--------------RGVHPASWT-------INNIAKMKQQLKSLGISFD-WDREISTCEPDYY- 157 (876)
T ss_pred --------hHH---Hh--------------cCCCchhhh-------HHHHHHHHHHHHHcCcccc-cccccccCCcchh-
Confidence 011 11 123455453 3345778999999999998 5444 3445
Q ss_pred CCChHHHHHHHHHcCCeee
Q psy5226 276 TGKVSLVTKLLIQSGKTYY 294 (582)
Q Consensus 276 ~~~i~~~i~~L~~~g~~~~ 294 (582)
.+.+-++-+|.++|++|+
T Consensus 158 -KWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 158 -KWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred -HHHHHHHHHHHHhhhhhc
Confidence 467889999999999985
No 99
>PLN02959 aminoacyl-tRNA ligase
Probab=98.74 E-value=3.7e-07 Score=108.62 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=95.3
Q ss_pred EEEEecCcc-hhHHHHHH-HHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRVKA-GLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~~~-~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+++.|.||+ +|+..... ..... |..+-...++++|||.. +|+ |||||+||+|++.|+++++
T Consensus 674 l~~sG~Dii~~wl~~~l~~~~al~--~~~P~p~~v~v~G~V~~--~G~--KMSKSkGNvI~p~diI~ky----------- 736 (1084)
T PLN02959 674 LRVSGKDLIQNHLTFAIYNHTAIW--AEEHWPRGFRCNGHLML--NSE--KMSKSTGNFLTLRQAIEEF----------- 736 (1084)
T ss_pred EEEecccHHHHHHHHHHHHHHHhc--CCCCCCceEEEccEEec--CCc--CccccCCCcCCHHHHHHHh-----------
Confidence 567788876 56543221 22223 43321125788999974 788 9999999999999999999
Q ss_pred hHhhhhcchhhHHHHHhccC-CCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHH---Hhc-CC-CCCcccccccCCCC
Q psy5226 421 FREDLIRGRDLMRFFLISRK-SDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLL---NQW-GG-DKKSLISIKDLSSL 494 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~sil---rk~-~~-~~~~~~~~~d~~~l 494 (582)
|.|++||++++.. ...|.+|+++.+.... .|+.+.+ ... .. ...+ . ...+
T Consensus 737 -------GADalRl~la~~~~~~~D~nF~~k~~n~~~------------~~l~n~~~~~~~~~~~~~~~~---~--~~~~ 792 (1084)
T PLN02959 737 -------SADATRFALADAGDGVDDANFVFETANAAI------------LRLTKEIAWMEEVLAAESSLR---T--GPPS 792 (1084)
T ss_pred -------CchHHHHHHhhcCCccCCCCccHHHHHHHH------------HHHHHHHHHHHHhhhhhcccC---C--cccC
Confidence 9999999999874 4688999987654311 1111111 111 00 0000 0 0112
Q ss_pred CCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHH
Q psy5226 495 NTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFY 528 (582)
Q Consensus 495 ~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~y 528 (582)
...++-++..+......+.+++++++.+.+++.
T Consensus 793 -~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~ 825 (1084)
T PLN02959 793 -TYADRVFENEINIAIAETEKNYEAMMFREALKS 825 (1084)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 345666888999999999999999999999986
No 100
>PLN02959 aminoacyl-tRNA ligase
Probab=98.68 E-value=9.9e-08 Score=113.44 Aligned_cols=60 Identities=23% Similarity=0.275 Sum_probs=55.8
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHH
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALS 182 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~ 182 (582)
.+..|.+.-||++|.|||||++|.++.|+++|+.|..|++|......+-.|+++-..+..
T Consensus 45 ~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek 104 (1084)
T PLN02959 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADK 104 (1084)
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHH
Confidence 568898889999999999999999999999999999999999999999999999877653
No 101
>PLN02563 aminoacyl-tRNA ligase
Probab=98.63 E-value=2.9e-07 Score=107.67 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=49.6
Q ss_pred CcEEEEEEecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHH
Q psy5226 122 NKKILIEFVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNL 179 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l 179 (582)
++.++.+ .-|+|+|. +||||+|+.+++|+++|+.|..||+|......+.+|.++-..
T Consensus 110 ~k~~v~~-~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~ 167 (963)
T PLN02563 110 PKFYVLD-MFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQY 167 (963)
T ss_pred CCEEEEe-CCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHH
Confidence 3444443 34999996 999999999999999999999999999999999999988654
No 102
>KOG0433|consensus
Probab=98.49 E-value=7e-07 Score=97.29 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=110.6
Q ss_pred EEEecCcc-hhHHHHHH-HHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhh
Q psy5226 344 NIQGDDHQ-GTITRVKA-GLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEF 421 (582)
Q Consensus 344 ~V~g~dh~-~~~~~~~~-~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~ 421 (582)
|.-|.||+ +||+.+.- ...+- +..|- ..++.|||. +.++|. |||||.||||.++.+++--.
T Consensus 570 ~LEG~DQ~rGWFQSsLLTsvA~q--~kAPY-k~vivHGFt-lDE~G~--KMSKSlGNVidP~~v~~G~~----------- 632 (937)
T KOG0433|consen 570 YLEGVDQFRGWFQSSLLTSVAVQ--NKAPY-KKVIVHGFT-LDENGN--KMSKSLGNVVDPTMVTDGSL----------- 632 (937)
T ss_pred EEecchhcchHHHHHHHHHHHHh--ccCCc-hheeeeeeE-ecCCcc--chhhcccCcCCHHHHhCCcc-----------
Confidence 44577877 67764432 22222 45443 467778997 777777 99999999999999987610
Q ss_pred HhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHH
Q psy5226 422 REDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELS 501 (582)
Q Consensus 422 ~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~ 501 (582)
..-++|.|++||+........++...+.-+.+ ..++ .--+..+.-=+.+-+..+...... ++..|+. --++-
T Consensus 633 -k~payGaD~LR~WVA~~~~t~d~~iGp~il~q-v~e~-l~K~R~T~RfllGnl~d~~~~~~~-~p~~dl~----~iDq~ 704 (937)
T KOG0433|consen 633 -KQPAYGADGLRFWVAGSENTGESKIGPKILDQ-VDEK-LIKFRNTFRFLLGNLQDFDGKQVK-FPLKDLR----YIDQY 704 (937)
T ss_pred -cCCCccccceeeeeecccccCceecCHHHHHH-HHHH-HHHHHhHHHHHhhcccccCCcccc-ccchhhh----hhhHH
Confidence 01123999999999977777888888776665 3322 111211111111222222221110 1111221 12556
Q ss_pred HHHHHhchHHHHHHHHHhhchHHHHHHHHH-HHHHHHhhhhc
Q psy5226 502 LLVKLSNYPEVLVNSVKDLCPHYVAFYLRD-LAKELHGYYNT 542 (582)
Q Consensus 502 L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~-La~~~n~fy~~ 542 (582)
++..|..+...+.+.+++++..++++-|.. +...++.||=+
T Consensus 705 ~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~Yfd 746 (937)
T KOG0433|consen 705 MLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFD 746 (937)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHH
Confidence 778899999999999999999999988877 88888988854
No 103
>KOG0434|consensus
Probab=98.32 E-value=0.00021 Score=77.77 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=92.4
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc--CCCCcccccHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR--KSDTDFIFDID 450 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~--~~~~~~~F~~~ 450 (582)
.+++..|.| |-+||+ |||||+.|...+..+++++ |.+|+|.++++. -+..++.|.-+
T Consensus 586 kNvIvnGlV-LAeDG~--KMSKrlkNYPdP~~iinkY------------------GADalRlYLInSPVvraE~LkFkee 644 (1070)
T KOG0434|consen 586 KNVIVNGLV-LAEDGK--KMSKRLKNYPDPSLIINKY------------------GADALRLYLINSPVVRAENLKFKEE 644 (1070)
T ss_pred hheeEeeeE-EecccH--HHhhhhhcCCCHHHHHHhh------------------cchheeeeeecCccccccccccchh
Confidence 467778887 668999 9999999999999999999 999999999876 35678899877
Q ss_pred HHhhhcCCC-------chHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCH--HHHHHHHHHhchHHHHHHHHHhhc
Q psy5226 451 LALKRSDEN-------PVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTE--KELSLLVKLSNYPEVLVNSVKDLC 521 (582)
Q Consensus 451 ~~~~~~~~n-------~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~--~e~~L~~~l~~f~~~v~~a~~~~~ 521 (582)
-+.....+- -.+|+|++ +| +.+-. +.++ ...+ .++.+ -++=++.....+..-+++-|++++
T Consensus 645 GVrevvk~v~lPW~NsyrF~~qn~-~~----~~~~~--g~~f-~~~~--~~~S~NvmDrWI~a~~qslv~fv~~eM~~Yr 714 (1070)
T KOG0434|consen 645 GVREVVKDVLLPWYNSYRFLVQNA-AL----LKKET--GKDF-VFDD--SVTSSNVMDRWILASTQSLVGFVREEMDQYR 714 (1070)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHHH-HH----hcccc--CCcc-cccc--ccccchhHHHHHHHHHHHHHHHHHHHHHhee
Confidence 766544321 23444443 12 22221 1110 0011 01111 122233444556667788888888
Q ss_pred hHHHHHHHHHHHHHHHhhhh---cccccCC
Q psy5226 522 PHYVAFYLRDLAKELHGYYN---TERILVK 548 (582)
Q Consensus 522 p~~l~~yl~~La~~~n~fy~---~~~vl~~ 548 (582)
...++--|.........+|- ..++.++
T Consensus 715 LytVvp~llkfiD~LTNwYiR~nRrrlkGe 744 (1070)
T KOG0434|consen 715 LYTVVPRLLKFIDELTNWYIRFNRRRLKGE 744 (1070)
T ss_pred hhhhHHHHHHHHHHhhhhheehhhhhhcCC
Confidence 87777777777777777663 3345444
No 104
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.22 E-value=2.5e-06 Score=100.25 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=81.8
Q ss_pred CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHH
Q psy5226 138 LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKK 217 (582)
Q Consensus 138 lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 217 (582)
+|+||+++.++.|+++|+.|..||+|.+....+-+|+++-..+..+ . .++ .+..+. +.+.
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~----~--~~~-----------~~~~~~---~~~~ 60 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERI----A--RGD-----------PETIEL---YKSL 60 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHh----h--ccc-----------hhHHHH---HHHH
Confidence 7999999999999999999999999999999999999886544311 0 000 000000 1111
Q ss_pred cCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCccc---ccccccccccCCChHHHHHHHHHcCCeee
Q psy5226 218 KKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFD---NYCLESSLYKTGKVSLVTKLLIQSGKTYY 294 (582)
Q Consensus 218 ~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD---~~~~ES~~~~~~~i~~~i~~L~~~g~~~~ 294 (582)
++ ++.++.+ +-.+|. ++ ++++...+++++++||+.+| .|..-+..| ...+...+.+|.++|++|+
T Consensus 61 ~g-i~~~~i~---~f~~~~------~~-~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y-~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 61 YG-IPEEELE---KFKDPE------YI-VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEY-SKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred cC-CCHHHHH---HhcCHH------HH-HHHhHHHHHHHHHHhCcEEeCCCCeECCChhH-HHHHHHHHHHHHHCCCEec
Confidence 11 1111111 113332 12 37778889999999999998 333222223 3578899999999999985
No 105
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0001 Score=84.96 Aligned_cols=131 Identities=21% Similarity=0.127 Sum_probs=85.8
Q ss_pred EEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy5226 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNG 204 (582)
Q Consensus 125 v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 204 (582)
.+.-=.-|+.+|.+||||+-|-||=|+|.|+....||+|.++-..|-+|.+|-.-+. +..|. .+
T Consensus 51 FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~ve-------k~lg~---------~k 114 (933)
T COG0060 51 FVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVE-------KKLGI---------GK 114 (933)
T ss_pred EEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHH-------HHhCC---------Cc
Confidence 333335689999999999999999999999999999999999998888887753222 00110 00
Q ss_pred ccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccc--cccccccCCChHHH
Q psy5226 205 EYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYC--LESSLYKTGKVSLV 282 (582)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~--~ES~~~~~~~i~~~ 282 (582)
..+ . +-+-.+.-+.|++.+ -.+.+.+++.++||||-.|--. -+-+.--+..+-.+
T Consensus 115 ~~i-------------------~---~~~~~efr~~Cr~~a-~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~ 171 (933)
T COG0060 115 KDI-------------------E---SFGVEEFREKCREFA-LEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWA 171 (933)
T ss_pred chh-------------------h---hcCHHHHHHHHHHHH-HHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHH
Confidence 000 0 112123334455554 6667889999999999776211 00000001234667
Q ss_pred HHHHHHcCCeee
Q psy5226 283 TKLLIQSGKTYY 294 (582)
Q Consensus 283 i~~L~~~g~~~~ 294 (582)
+.+|.++|++|+
T Consensus 172 f~~~~~kGllyr 183 (933)
T COG0060 172 FKELYEKGLLYR 183 (933)
T ss_pred HHHHHHCCCeec
Confidence 889999999986
No 106
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.42 E-value=0.00068 Score=72.71 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=41.8
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 339 FIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 339 ~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
++-.|-+.|.||..|+..-+...+.+ |..+. ..++.+.+. ..+|+ |||||.||.|+++|
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~r~--~~~~~--~~l~~plL~-~~~G~--KMsKS~~naI~L~d 245 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQRRY--GGKPQ--FGLTMPLLT-GLDGK--KMGKSEGNAVWLDE 245 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHHHh--CCCCe--EEEecCCcC-CCCCC--cccCCCCCceeCCC
Confidence 34445578999999998878877877 75432 334444441 24676 99999999999886
No 107
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.40 E-value=0.00083 Score=72.00 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=42.9
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHH
Q psy5226 340 IQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNL 405 (582)
Q Consensus 340 d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dl 405 (582)
+-.+-+.|.||..|+..-+...+.+ |...+ ..++.+.+ ...+|. |||||.||.|+++|=
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~--~~~~~--~~lt~PlL-~g~dG~--KMsKS~~naI~L~d~ 244 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKL--EGEEQ--FGLTMPLL-EGADGT--KMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHh--CCCCc--eEeccCCc-cCCCCC--ccCCCCCCceeccCC
Confidence 3345578999999998888888888 76543 33444444 235676 999999999988764
No 108
>PLN02486 aminoacyl-tRNA ligase
Probab=97.28 E-value=0.031 Score=59.33 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=40.5
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRN 404 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~d 404 (582)
+--+|.||..|+.-.+.++..+ |+..| ...|..++....++ ..|||||.+| .|.+.|
T Consensus 222 lVPvG~DQd~~~~ltRdia~r~--~~~kp--~~~~~~~lp~L~g~-~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPRL--GYYKP--ALIESRFFPALQGE-SGKMSASDPNSAIYVTD 279 (383)
T ss_pred eeecccchHHHHHHHHHHHHHh--CCCCc--ceeccccccCCCCC-CCcCcCcCCCCeeeccC
Confidence 3357999999998888888888 87544 34455666433332 2399999988 688876
No 109
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.24 E-value=0.045 Score=57.08 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=38.0
Q ss_pred EEecCcchhHHHHHHHHHHHHcC------CCCCCCcEEEEEEEE-Ee-eCCeeeecccCCCC-cccHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIG------IPNDYPNYILHKMVT-VI-KNGKEVKISKRSGS-YITIRNL 405 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G------~~~~~~~~~~~~~v~-l~-~~G~~~KMSkr~G~-~v~l~dl 405 (582)
.+|.||..|+.-.+.++..+ | +..| ..+|..++. +. -+|+ |||||.++ .|.+.|=
T Consensus 144 pvG~DQ~~h~elaRdia~r~--n~~~~~~f~~P--~~l~~~~~~~l~gl~~~--KMSKS~~~s~I~L~D~ 207 (328)
T TIGR00233 144 PVGIDQDQHLELTRDLAERF--NKKFKNFFPKP--ESLISKFFPRLMGLSGK--KMSKSDPNSAIFLTDT 207 (328)
T ss_pred ecccccHHHHHHHHHHHHHh--hhhcCcccCCC--hhhhccccCCCCCCCCC--cCCCCCCCCeEeecCC
Confidence 78999999998888888888 6 3333 334444431 21 2354 99999997 8877653
No 110
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.23 E-value=0.00094 Score=69.70 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=43.2
Q ss_pred EEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC-CCcccHHHHHHHH
Q psy5226 344 NIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS-GSYITIRNLIKWL 409 (582)
Q Consensus 344 ~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-G~~v~l~dll~~~ 409 (582)
-.+|.||..|+.-.+.+++.+ |+..+ ..++.+++.- -+|...|||||. |+.|.+.|=-+++
T Consensus 172 vpvG~DQ~~h~~l~Rdia~~~--n~~~p--~~l~~~~l~~-L~g~~~KMSKS~p~~~I~L~D~~~~I 233 (329)
T PRK08560 172 AVGGMDQRKIHMLAREVLPKL--GYKKP--VCIHTPLLTG-LDGGGIKMSKSKPGSAIFVHDSPEEI 233 (329)
T ss_pred EEechhHHHHHHHHHHhhHhc--CCCCc--eEEEcCccCC-CCCCCCCCcCCCCCCeecccCCHHHH
Confidence 378999999998888888888 87644 4455666522 244334999999 9999887643443
No 111
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=97.08 E-value=0.0067 Score=52.46 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcc
Q psy5226 464 IQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTE 543 (582)
Q Consensus 464 lqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~ 543 (582)
.++.+.|+++++.++..+..+ ..+.... .+.+..|+..+.++.+.+.+++++++++.+++.+++++...|.|++..
T Consensus 10 ~~n~~~r~~~~~~~~~~~~~~---~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~ 85 (117)
T cd07375 10 FLNRLYRLLSFFRKALGGTQP---KWDNELL-EEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDEL 85 (117)
T ss_pred HHHHHHHHHHHHHHhcCCCCC---CcChhhc-CHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHh
Confidence 455678999987776543222 1110112 355678999999999999999999999999999999999999999855
Q ss_pred c
Q psy5226 544 R 544 (582)
Q Consensus 544 ~ 544 (582)
+
T Consensus 86 ~ 86 (117)
T cd07375 86 K 86 (117)
T ss_pred h
Confidence 4
No 112
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.07 E-value=0.00084 Score=68.09 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=41.0
Q ss_pred EEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCccc
Q psy5226 342 AINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYIT 401 (582)
Q Consensus 342 ~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~ 401 (582)
.+-+.|.||..|+...+..++.+ ++..+ ..++++++. ..+|+ |||||.|+.++
T Consensus 153 ~l~~~G~DQ~~~i~~~rd~a~r~--~~~~~--~~l~~~ll~-~l~G~--KMSKS~~~~~~ 205 (269)
T cd00805 153 DLQLGGSDQRGNITLGRDLIRKL--GYKKV--VGLTTPLLT-GLDGG--KMSKSEGNAIW 205 (269)
T ss_pred CeeEecHHHHHHHHHHHHHHHHh--CCCCc--EEEeecccc-CCCCC--cccCCCCCccc
Confidence 34589999999999888888888 87643 456666662 34677 99999999884
No 113
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=96.97 E-value=0.0077 Score=68.28 Aligned_cols=108 Identities=14% Similarity=0.165 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhh
Q psy5226 461 VYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYY 540 (582)
Q Consensus 461 ~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy 540 (582)
..-+.-+|.|+..|++|...... ...|...+.++.|++|...+......+..+....+...++++|..|....+.||
T Consensus 568 ~~~l~~~~kRv~NIl~k~~~~~~---~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FF 644 (682)
T PRK01233 568 FKALAAANKRVSNILKKAEGKVS---GEVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAFF 644 (682)
T ss_pred HHHHHHHHHHHHHHHhccccccC---CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHh
Confidence 44567789999999998753211 123445677899999999999888888888888899999999999999999999
Q ss_pred hcccccCCChhhhHHHHHHHHHHHHHHHHHH
Q psy5226 541 NTERILVKNITIKMARLALIYSIGQVLNNGL 571 (582)
Q Consensus 541 ~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L 571 (582)
++.-|..++++++..||+|+..++..+....
T Consensus 645 D~VmVm~~d~~iR~NRL~LL~~i~~~f~~ia 675 (682)
T PRK01233 645 DNVMVMAEDEALRANRLALLASLRELFLRVA 675 (682)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998888889999999999999998876543
No 114
>KOG1147|consensus
Probab=96.87 E-value=0.001 Score=70.83 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeee
Q psy5226 247 AYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYY 294 (582)
Q Consensus 247 ~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~ 294 (582)
++|.+.+.+++..|||..|.+...|+.. +.+......|...|.+|.
T Consensus 249 ~eFe~~IleDl~~LgIkpd~~TyTSDyF--~~i~dycv~likeGKAYv 294 (712)
T KOG1147|consen 249 EEFEDVILEDLSLLGIKPDRVTYTSDYF--DEIMDYCVKLIKEGKAYV 294 (712)
T ss_pred HHHHHHHHHHHHHhCcCcceeeechhhH--HHHHHHHHHHHhcCcccc
Confidence 3445667889999999999999999765 567778888999999885
No 115
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=96.84 E-value=0.011 Score=67.20 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhh
Q psy5226 461 VYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYY 540 (582)
Q Consensus 461 ~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy 540 (582)
..-+.-++.|+..|++|.... .+ ...|...+.++.|.+|...+..+...+...+...+...+...|..|....+.||
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~-~~--~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FF 654 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPV-LS--SEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDEFF 654 (691)
T ss_pred HHHHHHHHHHHHHHHhccccc-cc--CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHh
Confidence 445677899999999997532 11 023445677899999999998887777777777788889999999999999999
Q ss_pred hcccccCCChhhhHHHHHHHHHHHHHHHHHH
Q psy5226 541 NTERILVKNITIKMARLALIYSIGQVLNNGL 571 (582)
Q Consensus 541 ~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L 571 (582)
++.-|..++++++..||+|+..++..+....
T Consensus 655 D~VmVm~~d~~iR~NRL~LL~~i~~lf~~ia 685 (691)
T TIGR00211 655 DSVMVMADDIELRQNRLNFLWGLRQLFLEVA 685 (691)
T ss_pred CCCEeeCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999888888999999999999998876544
No 116
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=96.76 E-value=0.0058 Score=64.86 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=38.0
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~d 404 (582)
..|.||..|+.-.+..+..+ |+.+.. .+.+.+++.=..||. .|||||.+| .|.+.|
T Consensus 215 pvG~DQ~~~~~LaRdia~~~--~~~~~~-~~~~~~~lpgL~dg~-~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 215 QLGMDQRKVNMLAREYCDKK--KIKKKP-IILSHHMLPGLLEGQ-EKMSKSDPNSAIFMED 271 (383)
T ss_pred EeCccHHHHHHHHHHHHHHh--CCCCCc-eeecccccccCCCCC-CCCCcCCCCCeecCCC
Confidence 58999988887778888888 864322 344566663333442 299999987 577765
No 117
>KOG0435|consensus
Probab=96.65 E-value=0.023 Score=62.44 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=73.7
Q ss_pred ecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226 391 KISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALKRSDENPVYYIQYAHA 469 (582)
Q Consensus 391 KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~~~~~n~~~ylqYa~a 469 (582)
|||||++|+|.+.|++++. |+|++|.+.|-..+ ..++..+-+.+ .| .-.++|
T Consensus 617 KMSKSK~NGVdP~~~v~~y------------------G~D~tRl~ilf~ap~~~~~nW~es~i----~G-i~rwl~---- 669 (876)
T KOG0435|consen 617 KMSKSKHNGVDPADVVLEY------------------GVDTTRLYILFAAPPRDPINWNESAI----PG-IKRWLQ---- 669 (876)
T ss_pred HhhhcccCCCCHHHHHHHh------------------CchHHHHHHHhhCCcccccccccccc----hh-HHHHHH----
Confidence 9999999999999999999 99999998887654 77777663332 22 122443
Q ss_pred HHHHHHHh---cCCCCCcccccccCCCCC---CHHHHHHHHHHhchHHHHHHHHHhhc-hHHHHHHHHHHHHHHHhhhhc
Q psy5226 470 RIFSLLNQ---WGGDKKSLISIKDLSSLN---TEKELSLLVKLSNYPEVLVNSVKDLC-PHYVAFYLRDLAKELHGYYNT 542 (582)
Q Consensus 470 R~~silrk---~~~~~~~~~~~~d~~~l~---~~~e~~L~~~l~~f~~~v~~a~~~~~-p~~l~~yl~~La~~~n~fy~~ 542 (582)
|+-.+... +.+.+.+ .|...++ ..+.++|......|-..+...++... .+.++.-++.|.....+-+..
T Consensus 670 riw~l~~~~~~ar~~g~~----~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~ 745 (876)
T KOG0435|consen 670 RIWALVSQILQARDDGKA----KDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKI 745 (876)
T ss_pred HHHHHHHHHHHHHhcCCc----ccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44433322 2122221 1222222 23444666666666666666665433 555666667776666666554
Q ss_pred cc
Q psy5226 543 ER 544 (582)
Q Consensus 543 ~~ 544 (582)
.-
T Consensus 746 ~~ 747 (876)
T KOG0435|consen 746 VL 747 (876)
T ss_pred hh
Confidence 43
No 118
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.64 E-value=0.0082 Score=61.00 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=42.1
Q ss_pred EEEEEecCcchhHHHHHHHHHHHHcC-CCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHH
Q psy5226 342 AINIQGDDHQGTITRVKAGLQAINIG-IPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIK 407 (582)
Q Consensus 342 ~i~V~g~dh~~~~~~~~~~l~~l~~G-~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~ 407 (582)
.+-..|.||..|+...+.+++.+ + +..+ ..++.+++. ..+|. |||||.||.+.+..+.+
T Consensus 155 ~~vp~G~DQ~~~i~l~rdla~r~--n~~~~p--~~l~~p~l~-~l~G~--KMSKS~~~~i~l~~~~d 214 (273)
T cd00395 155 DIQPGGSDQWGNITLGRELARRF--NGFTIA--EGLTIPLVT-KLDGP--KFGKSESGPKWLDTEKT 214 (273)
T ss_pred cEEEecHHHHHHHHHHHHHHHHh--CCCCCC--eEEeecccc-CCCCC--cCCCCCCCCccccccCC
Confidence 45588999999998888888877 5 3333 344556653 34676 99999999987655544
No 119
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.61 E-value=0.023 Score=60.05 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=41.3
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHHH--cCCCCCCCcEEEEEEEEEeeCCeeeecccCC-CCcccHHHHHHHH
Q psy5226 340 IQAINIQGDDHQGTITRVKAGLQAIN--IGIPNDYPNYILHKMVTVIKNGKEVKISKRS-GSYITIRNLIKWL 409 (582)
Q Consensus 340 d~~i~V~g~dh~~~~~~~~~~l~~l~--~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-G~~v~l~dll~~~ 409 (582)
...+-.+|.||..|+.-.+.++..++ .|+..| ..+|..++.- -+|+ |||||. ++.|.+.|=-+++
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpg-L~G~--KMSkS~~~s~I~L~D~p~~I 270 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPG-LTGG--KMSSSKPESAIYLTDDPETV 270 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccC-CCCC--cCCCCCCCCeeeccCCHHHH
Confidence 34455799999999887777766552 144444 3345555521 2565 999998 6788776533333
No 120
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.57 E-value=0.0054 Score=65.33 Aligned_cols=55 Identities=16% Similarity=-0.011 Sum_probs=35.3
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCC-------CCC-CcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIP-------NDY-PNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~-------~~~-~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
.+|.||..|+.-.+.+.+.+ +.. .|. ....+...+ ..-+|+ |||||.||.|.+.|
T Consensus 153 PVG~DQ~qHlELaRdIA~rF--N~~yg~~~F~~Pe~~i~~~~~~I-~gLdg~--KMSKS~~n~I~L~D 215 (431)
T PRK12284 153 PVGRDQIQHIEMARDIAQRF--NHLYGGEFFVLPEAVIEESVATL-PGLDGR--KMSKSYDNTIPLFA 215 (431)
T ss_pred EEcchhHHHHHHHHHHHHHH--hhhcCCcccCCCccccccccccc-cCCCCc--cccCCCCCEeeecC
Confidence 68999999988888887777 421 121 111122233 122576 99999999997754
No 121
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.26 E-value=0.017 Score=61.40 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=36.6
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
+-+.|.||.+|+.......+.+ +.... .....+.. ...+|. |||||.||.|++++
T Consensus 180 i~~gG~DQ~~ni~~g~dLar~~--~~~~~--~~~t~pLl-~~~dg~--KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 180 LQIGGSDQWGNIRKGRDLIRRN--LPSLG--FGLTVPLL-TPADGE--KMGKSGGGAVSLDE 234 (377)
T ss_pred eeEecchhHHHHHHHHHHHHHh--cCCCc--eeeceeee-cCCCCC--CccCCCCCcccCCc
Confidence 5578999999998777776666 53322 12223332 124677 99999999888754
No 122
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.04 Score=61.57 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhh
Q psy5226 461 VYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYY 540 (582)
Q Consensus 461 ~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy 540 (582)
+.-+--++.|+..|+.|.... .+ ...|.+++.++.|..|...+..+...+..+...-+...+...|..|..-...||
T Consensus 577 ~~~l~~a~kRv~nIl~k~~~~-~~--~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FF 653 (691)
T COG0751 577 AKALAAANKRVSNILAKAEKK-LS--GTVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFF 653 (691)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cC--CccChHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHh
Confidence 334557889999999988652 11 134555677899999999999999999999999888999999999999999999
Q ss_pred hcccccCCChhhhHHHHHHHHHHHHHHHHH
Q psy5226 541 NTERILVKNITIKMARLALIYSIGQVLNNG 570 (582)
Q Consensus 541 ~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~ 570 (582)
++.-|..+|++++..||+|+..++..+...
T Consensus 654 d~VmVm~eD~~iR~NRLalL~~l~~~f~~v 683 (691)
T COG0751 654 DNVMVMAEDEALRNNRLALLSKLRELFLKV 683 (691)
T ss_pred cCceeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888899999999999888776543
No 123
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=96.22 E-value=0.04 Score=64.45 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhh
Q psy5226 461 VYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYY 540 (582)
Q Consensus 461 ~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy 540 (582)
..-+.-++.|+..|++|.... ..|.+.+.+++|++|...+......+... ..+...+...|..|....+.||
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~------~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FF 964 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFS------VTDASLLLEPAELNLKQALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFF 964 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCC------ccChhhcCCHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHh
Confidence 445677899999999997532 12344577899999999888876666655 3366777889999999999999
Q ss_pred hcccccCCChhhhHHHHHHHHHHHHHHHHHH
Q psy5226 541 NTERILVKNITIKMARLALIYSIGQVLNNGL 571 (582)
Q Consensus 541 ~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L 571 (582)
++.-|..++++++..||+|+..++..+....
T Consensus 965 D~VmVm~eD~~iR~NRLaLL~~i~~lf~~va 995 (1000)
T PRK14908 965 DEVLVMADDEAIRNARLGLLAAIRDLKFGVL 995 (1000)
T ss_pred CCCEeeCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9998888889999999999999998876543
No 124
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=96.04 E-value=0.015 Score=65.88 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=37.0
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC-CCcccHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS-GSYITIRNL 405 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-G~~v~l~dl 405 (582)
.+|.||..|+.-.+.....+ |..+.. ...+..++.-..+| ..|||||. ||.|.+.|=
T Consensus 180 pvG~DQ~qh~eLaRdia~~~--g~~~kp-vil~~~~LpGL~gg-~~KMSKS~p~naI~L~Ds 237 (682)
T PTZ00348 180 QLGLDQRKVNMLAREYCDLI--GRKLKP-VILSHHMLAGLKQG-QAKMSKSDPDSAIFMEDT 237 (682)
T ss_pred EeCccHHHHHHHHHHHHHHh--CCCCCc-eecccccCcCCCCC-CCcCCCCCCCCeecccCC
Confidence 58999998887777777878 854321 33344554212233 23999999 689987653
No 125
>KOG0433|consensus
Probab=95.83 E-value=0.072 Score=59.33 Aligned_cols=43 Identities=26% Similarity=0.462 Sum_probs=37.0
Q ss_pred CCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHH
Q psy5226 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQI 176 (582)
Q Consensus 134 ~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~ 176 (582)
.+|.+|+||+++-|+-|+|-|++-..|.+|..+-.++=.|..+
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPi 108 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPI 108 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCch
Confidence 7799999999999999999999999999998766655555544
No 126
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=95.80 E-value=0.12 Score=45.62 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccccc
Q psy5226 467 AHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERIL 546 (582)
Q Consensus 467 a~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl 546 (582)
...|+.++..+...+..| .. ..+ ++.+..++..+.+....+.+++++++++.+++.+++++...|.|++..+.+
T Consensus 12 ll~r~~~~~~~~~~~~~~---~~--~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~~~kpw 85 (129)
T cd07957 12 LVNRTLNMASKYFGGVVP---EF--GGL-TEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDETAPW 85 (129)
T ss_pred HHHHHHHHHHHHcCCcCC---CC--CCC-CcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 347999988887665443 11 112 344566888999999999999999999999999999999999999876533
Q ss_pred C--CChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 547 V--KNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 547 ~--~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
. .+. ....+-..+..+..+++..+.+|.
T Consensus 86 ~~~~~~-~~~~~~~~l~~~~~~l~~~~~lL~ 115 (129)
T cd07957 86 KLAKEE-DPERLATVLYVLLELLRILAILLS 115 (129)
T ss_pred HHHccC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 110 111122344445556666666654
No 127
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.083 Score=56.20 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=37.4
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCccc
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYIT 401 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~ 401 (582)
+=+-|.||-.-+..-+..++.+ |+.++ ..+|++.++ ..+|+ |||||.|+.+.
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~--g~~~~--~~lt~PLL~-~ldG~--KmgKs~~~a~~ 234 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRL--GQKKV--VGLTTPLLT-GLDGK--KMGKSEGGAVW 234 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHh--CCCCe--EEEEecccc-CCCCC--cccccCCCceE
Confidence 3367889887665556666778 88443 678888874 34787 99999999443
No 128
>KOG0437|consensus
Probab=95.38 E-value=0.13 Score=57.42 Aligned_cols=61 Identities=28% Similarity=0.299 Sum_probs=52.5
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHH
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLAL 181 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~ 181 (582)
...+..+.|.=|+.+|.||+||+-|.-=-|+-+-+-|..|++|..-+..-=.|.+|.-.+-
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~Ad 102 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASAD 102 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHH
Confidence 3456899999999999999999999999999999999999999988777777777654443
No 129
>KOG0437|consensus
Probab=94.40 E-value=0.11 Score=58.05 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=44.2
Q ss_pred cEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHH
Q psy5226 374 NYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDID 450 (582)
Q Consensus 374 ~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~ 450 (582)
-+...||+.| +++ |||||.||+.||++-++++ |.++.|+.+.-. ....|.+|...
T Consensus 697 giraNGHLmL--NsE--KMSKSTGNfmTL~qaieKF------------------gad~tRlalAdaGD~veDANF~ea 752 (1080)
T KOG0437|consen 697 GIRANGHLML--NSE--KMSKSTGNFMTLEQAIEKF------------------GADGTRLALADAGDGVEDANFVEA 752 (1080)
T ss_pred ceeeCceEEe--cch--hhccccCCeeeHHHHHHHh------------------CccceeeeeecccCCcccchhHHh
Confidence 5567888877 566 9999999999999999999 999999887654 34567777533
No 130
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=93.84 E-value=0.82 Score=39.36 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcc
Q psy5226 467 AHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTE 543 (582)
Q Consensus 467 a~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~ 543 (582)
-.+|+.++.++...+..+ ..+...+ .+.++.++..+.+..+.+.+++++++.+.+++-+++++..+|+|++..
T Consensus 12 ~l~R~~~~~~~~~~~~~~---~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~ 84 (117)
T cd07958 12 FLNRVWRLVTELAEALAA---PAAAAEL-SEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKD 84 (117)
T ss_pred HHHHHHHHHHHHHhhccc---ccccccc-chhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhccc
Confidence 347888888876443332 1000112 345667888999999999999999999999999999999999998753
No 131
>PLN02886 aminoacyl-tRNA ligase
Probab=92.90 E-value=0.87 Score=48.39 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=26.4
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
||+--|+|.+|+||.-.++ .-...+.+ |+++. +.|-||
T Consensus 50 ~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~~--~~IADl 87 (389)
T PLN02886 50 VSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDTF--FCVVDL 87 (389)
T ss_pred EEEECCCCccHHHHHHHHH--HHHHHHhc--cCCEE--EEEecH
Confidence 7999999999999976554 33444443 77763 556663
No 132
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=91.81 E-value=0.13 Score=52.41 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=39.2
Q ss_pred EEEecCcchhHHHHHHHHHHHHcC------CCCCCCcEEEE--EEEEEeeCCeeeecccCCC-CcccHHH
Q psy5226 344 NIQGDDHQGTITRVKAGLQAINIG------IPNDYPNYILH--KMVTVIKNGKEVKISKRSG-SYITIRN 404 (582)
Q Consensus 344 ~V~g~dh~~~~~~~~~~l~~l~~G------~~~~~~~~~~~--~~v~l~~~G~~~KMSkr~G-~~v~l~d 404 (582)
-.+|.||..|+.-.+.+++.+ | +..| ..++. .++.-..+| ..|||||.| +.|.+.|
T Consensus 141 vpvG~DQ~~h~~l~Rdia~r~--n~~~~~~~~~P--~~l~~~~~~i~~l~g~-~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 141 VPVGIDQDPHLELTRDIARRF--NKLYGEIFPKP--AALLSKGAFLPGLQGP-SKKMSKSDPNNAIFLTD 205 (280)
T ss_pred EeeccccHHHHHHHHHHHHHh--ccccccccCCC--eeeccCCCccccCCCC-CCcccCCCCCCeEEeeC
Confidence 367999999999889888888 7 3333 34454 444222333 139999999 9998875
No 133
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.90 E-value=0.13 Score=52.88 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=39.7
Q ss_pred EEecCcchhHHHHHHHHHHHHcC------CCCCCCcEEEEE--EEEEeeCCeeeecccCCCC-cccHHHHHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIG------IPNDYPNYILHK--MVTVIKNGKEVKISKRSGS-YITIRNLIKWL 409 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G------~~~~~~~~~~~~--~v~l~~~G~~~KMSkr~G~-~v~l~dll~~~ 409 (582)
-+|.||..|+...+.+.+.+ + +..| ..++.. ++.=. +|. .|||||.+| +|.|.|=-+.+
T Consensus 150 PVG~DQ~qHleLtRDiA~rf--n~~y~~~f~~P--~~~~~~~~~i~gL-~g~-~KMSkS~~ns~I~L~D~~~~i 217 (314)
T COG0180 150 PVGEDQDQHLELTRDIARRF--NHLYGEVFPLP--EALISKVARLPGL-DGP-GKMSKSDPNSAIFLLDDPKTI 217 (314)
T ss_pred ccCCCchHHHHHHHHHHHHH--HhhcCCccCCc--cccccCCCcccCC-CCC-CcccccCCCCeeeccCCHHHH
Confidence 68999999999889888888 6 4444 223333 44212 452 399999999 88876543443
No 134
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=90.58 E-value=0.11 Score=53.44 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=44.0
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCC----CCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHHHHHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIP----NDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRNLIKWL 409 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~----~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~dll~~~ 409 (582)
+-+.|.||..|+.-.+..++.+ |.. .+ ..++.+++.. .+|.+ |||||.|| .|++.|=-+..
T Consensus 152 ~~~~G~DQ~~~~~l~rd~a~k~--~~~~~~~~p--~~l~~~~l~~-l~G~~-KMSKS~~ns~I~L~d~~~~i 217 (292)
T PF00579_consen 152 LVPGGIDQRGHIELARDLARKF--NYKEIFPKP--AGLTSPLLPG-LDGQK-KMSKSDPNSAIFLDDSPEEI 217 (292)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHH--THHSTSSS---EEEEETCBBS-TTSSS-BTTTTTTGGS-BTTTTHHHH
T ss_pred cccccchHHHHHHHHHHHHhhh--cccccccCc--hheeeccccc-cCCcc-ccCccCCccEEEEeccchhH
Confidence 4478999999999888888888 775 33 5677776633 34543 99999999 88887654444
No 135
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=90.45 E-value=4 Score=35.11 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHH-HHHHHHHHhhhhccccc
Q psy5226 468 HARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYL-RDLAKELHGYYNTERIL 546 (582)
Q Consensus 468 ~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl-~~La~~~n~fy~~~~vl 546 (582)
..|+.++..+...+..+ . +.+ .+.++.++..+.+....+.+++++++++.+++.+ +++....|.|.+.++-.
T Consensus 13 l~R~~~~~~~~~~~~~~---~---~~~-~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~~~~ 85 (117)
T cd07959 13 LERFYELAEELIETEGE---L---EEL-TFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGGAG 85 (117)
T ss_pred HHHHHHHHHHHHhccCC---c---ccc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 36999998875433222 1 112 3556778899999999999999999999999997 99999999887654211
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 547 VKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 547 ~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
........+++..+.+|.
T Consensus 86 -----------~~~~~~~~~l~~~~~lL~ 103 (117)
T cd07959 86 -----------MNKDLLRRFIEVWTRLLA 103 (117)
T ss_pred -----------chHHHHHHHHHHHHHHHc
Confidence 111245556666666654
No 136
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=87.31 E-value=0.44 Score=49.78 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=36.4
Q ss_pred EEecCcchhHHHHHHHHHHHHcC------CCCCCCcEE--EEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIG------IPNDYPNYI--LHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G------~~~~~~~~~--~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
.+|.||..|+.-.+.+.+.+ + +..|. .+. |..++.. -+|+ |||||.||.|.+.|
T Consensus 154 pvG~DQ~qhleLtRdiA~rf--n~~yg~~f~~P~-~~~~~~~~~l~g-Ldg~--KMSKS~~n~I~L~D 215 (332)
T PRK12556 154 PVGKDQIQHIEIARDIATYF--NHTFGDTFTLPE-YVIQEEGAILPG-LDGR--KMSKSYGNVIPLFA 215 (332)
T ss_pred EeccccHHHHHHHHHHHHHH--HHhccccCCCce-eccccccccccC-CCCC--CCCCCCCCcccccC
Confidence 68999999998888887777 5 22231 111 3444422 3566 99999999887654
No 137
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=83.49 E-value=8.9 Score=34.16 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHH--HHHhhhhcccc
Q psy5226 497 EKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAK--ELHGYYNTERI 545 (582)
Q Consensus 497 ~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~--~~n~fy~~~~v 545 (582)
+.+..++..+.+..+.+..++++++.+.+++.+++++. ..|.|++.+..
T Consensus 42 ~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~~~~p 92 (135)
T cd07962 42 LADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELVKP 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 45667889999999999999999999999999999987 79999998754
No 138
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=80.48 E-value=1 Score=47.20 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=38.2
Q ss_pred EEEecCcchhHHHHHHHHHHHHcC--CCCC-----CCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHH
Q psy5226 344 NIQGDDHQGTITRVKAGLQAINIG--IPND-----YPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKW 408 (582)
Q Consensus 344 ~V~g~dh~~~~~~~~~~l~~l~~G--~~~~-----~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~ 408 (582)
-.+|.||..|+.-.+.++..+ | +..+ .....+..++.-. +|. .|||||.++.|.+.|=-++
T Consensus 146 vpvG~DQ~~h~~laRdiA~~~--n~~~~~~~~~~p~~~~~~~~~i~~L-~g~-~KMSKS~~~~I~L~D~pe~ 213 (333)
T PRK12282 146 VPVGDDQLPMIEQTREIVRRF--NSLYGTDVLVEPEALLPEAGRLPGL-DGK-AKMSKSLGNAIYLSDDADT 213 (333)
T ss_pred EEeccccHHHHHHHHHHHHHH--hhhcCCccccCchhcccCCCcccCC-CCC-CcCCCCCCCeeeeeCCHHH
Confidence 378999999998888888888 6 3211 0001123343211 442 3999999999987664333
No 139
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.43 E-value=1.1 Score=47.04 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=37.6
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCC------CCCCCcEEEE---EEEEEeeCCeeeecccCCC---CcccHHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGI------PNDYPNYILH---KMVTVIKNGKEVKISKRSG---SYITIRNL 405 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~------~~~~~~~~~~---~~v~l~~~G~~~KMSkr~G---~~v~l~dl 405 (582)
+-.+|.||..|+.-.+.++..+ +. ..| ..++. +.+. .-+|...|||||.| +.|.+.|=
T Consensus 141 ivpvG~DQ~~h~elaRdia~~~--n~~~~~~f~~P--~~i~~~~~~~l~-gL~g~~~KMSKS~~~~~~~I~l~D~ 210 (333)
T PRK00927 141 LVPVGEDQKQHLELTRDIARRF--NNLYGEVFPVP--EPLIPKVGARVM-GLDGPTKKMSKSDPNDNNTINLLDD 210 (333)
T ss_pred EEeeccchHHHHHHHHHHHHHh--hhhccccCCCC--hhhhcccccccc-CCCCCCCCCCCCCCCCCCeEEeeCC
Confidence 3378999999998888888877 53 223 22222 3331 12454349999999 88987653
No 140
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=80.37 E-value=7.2 Score=35.34 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=51.1
Q ss_pred HHHHHHHhchHHHHHHHHHhhchHHHHHHHHHH-HHHH-Hhhhhccc--ccCCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 500 LSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDL-AKEL-HGYYNTER--ILVKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 500 ~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~L-a~~~-n~fy~~~~--vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
+-++..+.+..+.+.+++++++.+.+++.++++ ...| |.|.+.++ ....+.. .. |- .......+++..+.+|-
T Consensus 2 ~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~-~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 2 RWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDD-ES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTC-HH-HH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccch-hH-HH-HHHHHHHHHHHHhhccC
Confidence 447788889999999999999999999999995 6788 77777653 2222211 11 44 55666777777776664
No 141
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=74.76 E-value=2.2 Score=43.79 Aligned_cols=45 Identities=33% Similarity=0.473 Sum_probs=30.7
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
+++..| |++--|+|++|+||+=.... +.++.+ .|++|+ ..|+||=
T Consensus 3 ~~~~~~-y~G~~PTg~lHlG~l~~~~~---~~~lq~-~g~~~~--i~iaD~~ 47 (292)
T PF00579_consen 3 NKPFRV-YTGIDPTGDLHLGHLVPIMK---LIWLQK-AGFKVI--ILIADLH 47 (292)
T ss_dssp HSSEEE-EEEEESSSS-BHHHHHHHHH---HHHHHH-TTSEEE--EEEEHHH
T ss_pred CCCcEE-EEeECCCCcccchHHHHHHH---HHHHHh-cCCccc--eEecchh
Confidence 344556 89999999999998877643 444444 899886 4566743
No 142
>KOG1148|consensus
Probab=72.97 E-value=5.4 Score=43.95 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=45.1
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhH----------------------------HHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCA----------------------------IGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~i----------------------------iGd~laril~~~G~~V~~~~~i~D~G 173 (582)
|.+|+- ---|-|+|-|||||+...- ..++|.++-+.+||+-.++-|..|.=
T Consensus 246 GGkV~T-RFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKVVT-RFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCeeEE-eCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 455655 4469999999999997543 35789999999999999999999966
Q ss_pred hHHHHHHH
Q psy5226 174 VQITNLAL 181 (582)
Q Consensus 174 ~q~~~l~~ 181 (582)
-|+=.++.
T Consensus 325 dqLy~~av 332 (764)
T KOG1148|consen 325 DQLYELAV 332 (764)
T ss_pred HHHHHHHH
Confidence 65544433
No 143
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=67.70 E-value=38 Score=31.73 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHH--HHHhhhhccccc--CCChhhhHHHHHHHHHHHHHHHHHH
Q psy5226 496 TEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAK--ELHGYYNTERIL--VKNITIKMARLALIYSIGQVLNNGL 571 (582)
Q Consensus 496 ~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~--~~n~fy~~~~vl--~~~~~~~~~RL~L~~a~~~vL~~~L 571 (582)
.+.++.++..+.++...+.+++++++.+.+++.+++++. ..|.|++..+-. ....+ ...|.........+++..+
T Consensus 43 ~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~-~~~~~~~~~~l~~~l~~l~ 121 (180)
T cd07960 43 LELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKD-SLERRSAQTVLYHILDALL 121 (180)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcccceecCCCC-CHHHHHHHHHHHHHHHHHH
Confidence 345666899999999999999999999999999999985 558888865422 11100 0112223344555666666
Q ss_pred HhcC
Q psy5226 572 KLIG 575 (582)
Q Consensus 572 ~lLG 575 (582)
.+|.
T Consensus 122 ~lL~ 125 (180)
T cd07960 122 KLLA 125 (180)
T ss_pred HHHc
Confidence 6664
No 144
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=64.92 E-value=16 Score=28.01 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHH-hhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5226 514 VNSVK-DLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGIS 577 (582)
Q Consensus 514 ~~a~~-~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi~ 577 (582)
.+|++ +++...++..++++++..|+-.... +. .-..+++..++....+|||-
T Consensus 3 ~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~~-----~~-------~~~~~~~~~l~~~~~vLGl~ 55 (63)
T PF09190_consen 3 IEAMDDDFNTPEALAALFELVKEINRALESN-----DK-------EDLEALAAALRKLLDVLGLL 55 (63)
T ss_dssp HHHHCBTS-HHHHHHHHHHHHHHHHHHHHCC------H-------HHHHHHHHHHHHHHHCCT-S
T ss_pred HHHHhHhcCcHHHHHHHHHHHHHHHHhcccC-----CH-------HHHHHHHHHHHHHHhcCcCC
Confidence 34444 5888888899999999999921111 11 11234457777778999983
No 145
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=57.49 E-value=6.1 Score=42.13 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=25.6
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHH-HcCCeeEEEEeecCch
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFI-SQGYKVTREFYYNDTG 173 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~-~~G~~V~~~~~i~D~G 173 (582)
+|+--|+|.+|+||.-.++ .++.+ ..|+++ ...|-||=
T Consensus 6 ~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~--~~~IADlH 44 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYEC--FFFVADWH 44 (398)
T ss_pred EEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcE--EEEeecHH
Confidence 6899999999999976643 34443 236664 45666654
No 146
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=51.89 E-value=11 Score=38.50 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=27.3
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
|++--|+|.+|+||+-.++.- ...|...|+++. ..|+||
T Consensus 3 ~tG~~PTG~lHLG~~~~al~~---~~~lQ~ag~~~~--~~IaD~ 41 (280)
T cd00806 3 LSGIQPSGSLHLGHYLGAFRF---WVWLQEAGYELF--FFIADL 41 (280)
T ss_pred EEeeCCCchhhHHHHHHHHHH---HHHHHhCCCCEE--EEecch
Confidence 788899999999998775442 233344588765 456774
No 147
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=45.31 E-value=1.1e+02 Score=28.74 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhh-hcccc-c-CCChhhhHHHHHHHHHHHHHHHHHHH
Q psy5226 496 TEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYY-NTERI-L-VKNITIKMARLALIYSIGQVLNNGLK 572 (582)
Q Consensus 496 ~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy-~~~~v-l-~~~~~~~~~RL~L~~a~~~vL~~~L~ 572 (582)
.+.++-++..+.+.-..+.+++++++.+.+++.+++......++| +.++- + ..+.. ..|.........+++..+.
T Consensus 46 ~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~~~~~~~Y~e~~K~~~~~~~~~--~~~~~~~~~l~~~l~~ll~ 123 (183)
T cd07961 46 NVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWYIRRNRKRFWGEEGD--DDKLAAYATLYEVLLTLSR 123 (183)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHhhhchHHhcCCCCc--hhHHHHHHHHHHHHHHHHH
Confidence 355677888999999999999999999999999999888775655 44321 1 22111 1233344455666666666
Q ss_pred hcC
Q psy5226 573 LIG 575 (582)
Q Consensus 573 lLG 575 (582)
+|.
T Consensus 124 ll~ 126 (183)
T cd07961 124 LMA 126 (183)
T ss_pred HHh
Confidence 654
No 148
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=43.53 E-value=16 Score=27.28 Aligned_cols=20 Identities=30% Similarity=0.384 Sum_probs=16.1
Q ss_pred HHHH--HHHHHHcCCeeEEEEe
Q psy5226 149 GDIL--SSLFISQGYKVTREFY 168 (582)
Q Consensus 149 Gd~l--aril~~~G~~V~~~~~ 168 (582)
|.+. .|+|+.+||+|+.+.|
T Consensus 18 g~t~lk~r~L~~~G~~Vi~Ip~ 39 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYKVISIPY 39 (58)
T ss_pred hHHHHHHHHHHHCCCEEEEecH
Confidence 4444 5899999999999884
No 149
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=43.16 E-value=27 Score=36.62 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=26.3
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchh
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGV 174 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~ 174 (582)
|++--|+|++|+||.-.++. -.+-|...|. | ...|.||=.
T Consensus 6 ~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~ha 45 (333)
T PRK12282 6 LTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQQA 45 (333)
T ss_pred EEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccchh
Confidence 78999999999999655332 2224555564 4 466777643
No 150
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=42.33 E-value=21 Score=37.32 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=28.0
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhH
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQ 175 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q 175 (582)
|++--|+|.+|+||.=.++ .-+.++.+. ++| ...|.||=..
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~~--~~~--~~~IaD~ha~ 45 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQDE--YEC--FFCIADLHAL 45 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHhc--CCe--EEEEecHHHH
Confidence 6889999999999977654 234444442 554 4678886543
No 151
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=40.08 E-value=27 Score=36.51 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=25.5
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
||+--|+|.+|+||.-.++-- ..++.+..|. .....|-||=
T Consensus 7 ~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~--~~~~~IADlH 47 (332)
T PRK12556 7 LTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEG--KALYFIADYH 47 (332)
T ss_pred EEEECCCCcchHHHHHHHHHH--HHHHHHhcCC--eEEEEEechh
Confidence 799999999999995443221 2233444444 4446677743
No 152
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=38.40 E-value=97 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=32.3
Q ss_pred HhhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy5226 518 KDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGI 576 (582)
Q Consensus 518 ~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi 576 (582)
+++..+.+...++++++..|++.+... +. . . ...+...+...+.+||+
T Consensus 8 DD~NT~~Al~~l~~l~~~~N~~l~~~~----~~--~--~---~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 8 DDFNTPEALAVLFELAREINRLLLKAV----DA--E--E---LAALAALLRALGGVLGL 55 (56)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhhccc----CH--H--H---HHHHHHHHHHHHhccCC
Confidence 368888888899999999999764210 11 1 1 23344556667789997
No 153
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=33.68 E-value=1.3e+02 Score=27.38 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=38.0
Q ss_pred chHHHHHHHHH-hhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy5226 508 NYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGI 576 (582)
Q Consensus 508 ~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi 576 (582)
.+++.+..|++ +++.+.++..|+++++..|++.+.. . . . +......+...+.+|||
T Consensus 33 ~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~~------~--~--~---~~~~~~~l~~~~~vLGl 89 (156)
T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKKED------I--E--K---AAALAALLKALGGVLGL 89 (156)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhccc------h--H--H---HHHHHHHHHHHHhccCC
Confidence 34455666665 6899999999999999999876431 0 1 1 12234556667789998
No 154
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=32.97 E-value=34 Score=28.95 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 559 LIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 559 L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
.....-+-|+-.|.=|||++||.|
T Consensus 78 ~y~~~lqeikp~l~ELGI~t~EeL 101 (103)
T cd00923 78 IYPYILQEIKPTLKELGISTPEEL 101 (103)
T ss_pred hHHHHHHHHhHHHHHHCCCCHHHh
Confidence 455666777778888999999875
No 155
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=33 Score=31.82 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCeeEEEEeecCc
Q psy5226 151 ILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 151 ~laril~~~G~~V~~~~~i~D~ 172 (582)
-|||+||.+||+|...+-..|+
T Consensus 17 ~LARwLRllGydt~~~~~~~d~ 38 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNESDD 38 (165)
T ss_pred HHHHHHHHcCCceeeeccCCcH
Confidence 4899999999999987644553
No 156
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=30.75 E-value=26 Score=29.93 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 559 LIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 559 L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
.....-+-|+-.|.=|||++||.|
T Consensus 81 ~Y~~~lqElkPtl~ELGI~t~EeL 104 (108)
T PF02284_consen 81 IYPYILQELKPTLEELGIPTPEEL 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHT---TTTT
T ss_pred HHHHHHHHHhhHHHHhCCCCHHHh
Confidence 455666777777888999999976
No 157
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=30.70 E-value=95 Score=28.02 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.1
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEe
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFY 168 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~ 168 (582)
.|+|-|==.||||.++-| -++.+|...||+|+-+|=
T Consensus 16 ~K~IAvVG~S~~P~r~sy-----------~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 16 AKTIAVVGASDKPDRPSY-----------RVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred CceEEEEecCCCCCccHH-----------HHHHHHHHCCCEEEeeCc
Confidence 466766688999999955 589999999999998883
No 158
>PRK09620 hypothetical protein; Provisional
Probab=29.22 E-value=94 Score=30.66 Aligned_cols=46 Identities=24% Similarity=0.182 Sum_probs=35.2
Q ss_pred CCcEEEEEEecCC---CCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEE
Q psy5226 121 SNKKILIEFVSAN---PTGPLHIGHGRQCAIGDILSSLFISQGYKVTREF 167 (582)
Q Consensus 121 ~~~~v~Ve~sspN---~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~ 167 (582)
.+++|+| -++|+ +-.-=.|+|--|--+|-.||+.|...|++|+.+.
T Consensus 2 ~gk~vlI-TaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~ 50 (229)
T PRK09620 2 KGKKVLI-TSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLH 50 (229)
T ss_pred CCCEEEE-eCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEe
Confidence 4678888 55553 1122378888889999999999999999998664
No 159
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.44 E-value=86 Score=32.50 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=25.1
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecC
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYND 171 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D 171 (582)
+|+--|+|.||+||.-. -.-.++.-..+| +...+.|-|
T Consensus 9 lSG~~PSG~lHLGny~g----a~~~~v~~q~~~-~~~f~~IaD 46 (314)
T COG0180 9 LSGIQPSGKLHLGNYLG----AIRNWVLLQEEY-YECFFFIAD 46 (314)
T ss_pred EecCCCCCCcchhHhHH----HHHHHHHHhccc-CceEEEEec
Confidence 69999999999999744 344455555554 333344555
No 160
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=26.95 E-value=32 Score=29.13 Aligned_cols=15 Identities=47% Similarity=0.915 Sum_probs=11.9
Q ss_pred ecCCCCCCCccchhhh
Q psy5226 130 VSANPTGPLHIGHGRQ 145 (582)
Q Consensus 130 sspN~~k~lHiGHlRs 145 (582)
.+.++ +|+|.||+.-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 35666 9999999974
No 161
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=25.68 E-value=45 Score=30.37 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCeeEEEEeecC
Q psy5226 151 ILSSLFISQGYKVTREFYYND 171 (582)
Q Consensus 151 ~laril~~~G~~V~~~~~i~D 171 (582)
-|||.||.+||+|...+.++|
T Consensus 11 ~Lar~LR~lG~Dt~~~~~~~D 31 (147)
T PF01927_consen 11 RLARWLRLLGYDTLYSRDIDD 31 (147)
T ss_pred HHHHHHHHCCCcEEEeCCCCh
Confidence 489999999999996664444
No 162
>KOG2623|consensus
Probab=21.47 E-value=1.3e+02 Score=31.90 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=35.0
Q ss_pred CceEEEEEecCcchhHHHHHHHH-HHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHH
Q psy5226 339 FIQAINIQGDDHQGTITRVKAGL-QAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIR 403 (582)
Q Consensus 339 ~d~~i~V~g~dh~~~~~~~~~~l-~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~ 403 (582)
.+..+-+-|+||-+++..=-... +.+ +.. ....-+.++.++ ...|. |+-||.||.|+++
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~--~~~-~~vfGlT~PLlT-sstG~--KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIM--PIQ-AFVFGLTFPLLT-SSTGA--KLGKSAGNAVWLD 285 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhc--ccc-cceeeeeeeeEe-cCcch--hhccCCCceEEec
Confidence 44556788999998765322222 222 221 111233445553 35677 9999999999875
No 163
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=20.74 E-value=86 Score=25.06 Aligned_cols=19 Identities=16% Similarity=0.510 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCeeEEEE
Q psy5226 149 GDILSSLFISQGYKVTREF 167 (582)
Q Consensus 149 Gd~laril~~~G~~V~~~~ 167 (582)
|+.++++++..|++++|-.
T Consensus 22 Ge~ia~~~~~~G~~~iRGS 40 (74)
T PF04028_consen 22 GELIARVLERFGFRTIRGS 40 (74)
T ss_pred HHHHHHHHHHcCCCeEEeC
Confidence 8899999999999999876
No 164
>PRK02001 hypothetical protein; Validated
Probab=20.59 E-value=6.3e+02 Score=23.22 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=46.2
Q ss_pred ceeeEEeecCcEEEEEeCch---------HHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHH
Q psy5226 79 LIQSIEIIKPGFINLKISSS---------IKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIG 149 (582)
Q Consensus 79 ~i~~v~~~~~GfiN~~l~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiG 149 (582)
.+..|++.+.+.|-++++.. .+++.+..++... ...+.+|.|||=..-||.-
T Consensus 21 eLvdv~~~~~~~lrV~ID~~~Gv~lddC~~vSr~is~~LD~~----------d~~Y~LEVSSPGldRpL~~--------- 81 (152)
T PRK02001 21 FLVDLTISPDNKIVVEIDGDEGVWIEDCVELSRAIEHNLDRE----------EEDFELEVGSAGLTSPLKV--------- 81 (152)
T ss_pred EEEEEEEEcCCEEEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CCCeEEEEeCCCCCCcCCC---------
Confidence 36788888878888888742 2334455555421 2568999999998888753
Q ss_pred HHHHHHHHHcCCeeEEEE
Q psy5226 150 DILSSLFISQGYKVTREF 167 (582)
Q Consensus 150 d~laril~~~G~~V~~~~ 167 (582)
-.-+-++.|..|.-..
T Consensus 82 --~~~f~r~~G~~v~V~l 97 (152)
T PRK02001 82 --PRQYKKNIGRELEVLT 97 (152)
T ss_pred --HHHHHHhCCCEEEEEE
Confidence 3445688899986433
Done!