Query psy5226
Match_columns 582
No_of_seqs 270 out of 2195
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:54:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zue_A Arginyl-tRNA synthetase 100.0 9E-112 3E-116 944.0 48.1 562 1-582 1-629 (629)
2 1f7u_A Arginyl-tRNA synthetase 100.0 1E-111 4E-116 936.0 45.5 554 4-582 30-607 (607)
3 3fnr_A Arginyl-tRNA synthetase 100.0 4E-104 1E-108 849.2 51.3 453 93-582 1-454 (464)
4 1iq0_A Arginyl-tRNA synthetase 100.0 4E-104 1E-108 879.9 42.6 533 5-582 2-592 (592)
5 4dlp_A Aminoacyl-tRNA syntheta 100.0 4E-43 1.4E-47 387.6 30.0 365 121-574 23-481 (536)
6 3kfl_A Methionyl-tRNA syntheta 100.0 5.4E-43 1.8E-47 387.9 30.8 344 113-544 16-468 (564)
7 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.9E-41 1E-45 364.0 31.2 332 121-576 19-393 (461)
8 3h99_A Methionyl-tRNA syntheta 100.0 3.5E-40 1.2E-44 366.0 29.9 366 121-576 16-506 (560)
9 2x1l_A Methionyl-tRNA syntheta 100.0 4.5E-38 1.6E-42 346.7 30.0 339 120-545 9-441 (524)
10 2csx_A Methionyl-tRNA syntheta 100.0 8.1E-39 2.8E-43 350.5 23.1 330 122-545 4-421 (497)
11 2d5b_A Methionyl-tRNA syntheta 100.0 2.3E-38 7.9E-43 347.3 21.6 331 123-544 3-422 (500)
12 3tqo_A Cysteinyl-tRNA syntheta 100.0 8.5E-34 2.9E-38 302.7 35.9 334 121-577 22-397 (462)
13 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.2E-34 4.3E-39 309.1 25.3 302 122-538 37-390 (414)
14 1rqg_A Methionyl-tRNA syntheta 100.0 5E-33 1.7E-37 315.4 33.0 337 123-545 2-475 (722)
15 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.1E-31 3.7E-36 287.6 29.1 330 124-537 42-416 (501)
16 3u1f_A Methionyl-tRNA syntheta 100.0 1.5E-30 5.2E-35 288.0 31.4 338 120-544 6-452 (542)
17 1irx_A Lysyl-tRNA synthetase; 99.9 3E-27 1E-31 259.5 12.1 277 99-454 4-325 (523)
18 1wkb_A Leucyl-tRNA synthetase; 99.9 4E-24 1.4E-28 246.6 36.9 135 373-544 636-772 (810)
19 1ile_A Ilers, isoleucyl-tRNA s 99.9 3E-23 1E-27 239.2 25.0 202 343-575 547-755 (821)
20 1gax_A Valrs, valyl-tRNA synth 99.9 8.2E-22 2.8E-26 226.4 36.7 158 344-540 485-649 (862)
21 1ffy_A Isoleucyl-tRNA syntheta 99.9 6E-23 2E-27 237.7 26.1 198 343-575 551-757 (917)
22 2o5r_A Glutamyl-tRNA synthetas 99.9 2.5E-23 8.6E-28 224.1 17.6 142 296-454 182-331 (481)
23 4arc_A Leucine--tRNA ligase; l 99.9 1.6E-21 5.4E-26 223.4 29.8 119 391-539 639-759 (880)
24 3al0_C Glutamyl-tRNA(Gln) amid 99.9 8.2E-23 2.8E-27 224.5 16.5 266 96-454 104-427 (592)
25 2v0c_A Aminoacyl-tRNA syntheta 99.9 4.3E-21 1.5E-25 221.3 28.6 121 391-542 637-761 (878)
26 3gdz_A Arginyl-tRNA synthetase 99.9 1.5E-21 5.2E-26 168.2 10.7 105 4-115 5-109 (109)
27 1wz2_A Leucyl-tRNA synthetase; 99.8 7.6E-18 2.6E-22 196.8 32.6 135 373-544 636-772 (967)
28 1nzj_A Hypothetical protein YA 99.8 5.7E-20 2E-24 186.1 11.3 192 125-405 6-241 (298)
29 3afh_A Glutamyl-tRNA synthetas 99.8 1.5E-18 5.2E-23 186.6 19.8 190 249-454 76-323 (488)
30 2cfo_A Glutamyl-tRNA synthetas 99.7 1.3E-16 4.6E-21 171.8 19.0 237 130-454 6-317 (492)
31 4g6z_A Glutamate-tRNA ligase; 99.7 5.4E-16 1.8E-20 165.9 20.4 244 123-457 24-334 (490)
32 1j09_A Glutamyl-tRNA synthetas 99.7 9.4E-16 3.2E-20 164.3 18.3 189 251-454 54-312 (468)
33 2ja2_A Glutamyl-tRNA synthetas 99.6 5.6E-15 1.9E-19 158.9 20.1 194 250-457 58-328 (498)
34 3aii_A Glutamyl-tRNA synthetas 99.6 1.3E-15 4.6E-20 164.1 14.0 229 123-454 95-391 (553)
35 4gri_A Glutamate--tRNA ligase; 99.6 1.7E-14 5.8E-19 157.0 18.5 133 311-457 205-344 (512)
36 1qtq_A GLNRS, protein (glutami 99.5 1.8E-13 6E-18 147.7 18.0 243 97-454 8-329 (553)
37 2hz7_A Glutaminyl-tRNA synthet 99.5 2.4E-13 8E-18 152.8 19.2 245 97-453 48-368 (851)
38 2cyb_A Tyrosyl-tRNA synthetase 98.2 2.6E-06 8.8E-11 87.3 9.5 58 338-404 170-227 (323)
39 2dlc_X Tyrosyl-tRNA synthetase 97.9 6.8E-06 2.3E-10 86.3 5.3 57 345-408 187-245 (394)
40 1n3l_A Tyrosyl-tRNA synthetase 97.7 0.00013 4.3E-09 76.1 9.7 54 345-405 183-237 (372)
41 2cya_A Tyrosyl-tRNA synthetase 97.3 0.00054 1.8E-08 71.0 9.5 55 345-405 182-253 (364)
42 2g36_A Tryptophanyl-tRNA synth 97.0 0.00039 1.3E-08 71.4 4.6 58 344-404 157-218 (340)
43 2el7_A Tryptophanyl-tRNA synth 97.0 0.0003 1E-08 72.2 2.9 58 343-405 144-209 (337)
44 3vgj_A Tyrosyl-tRNA synthetase 96.7 0.0018 6.1E-08 67.2 6.6 56 345-404 205-261 (373)
45 2zp1_A Tyrosyl-tRNA synthetase 96.6 0.0084 2.9E-07 60.8 10.4 58 339-409 164-222 (314)
46 1yi8_B Tryptophanyl-tRNA synth 96.6 0.0017 5.9E-08 66.9 5.1 57 345-405 167-229 (351)
47 2j5b_A Tyrosyl-tRNA synthetase 96.6 0.0038 1.3E-07 64.2 7.7 59 345-408 191-250 (348)
48 3tzl_A Tryptophanyl-tRNA synth 96.5 0.0012 4.1E-08 67.2 3.5 53 345-404 144-205 (322)
49 3p0j_A Tyrosyl-tRNA synthetase 96.3 0.015 5E-07 65.1 10.9 57 345-405 188-245 (690)
50 2yy5_A Tryptophanyl-tRNA synth 96.2 0.001 3.5E-08 68.5 1.1 38 129-172 8-45 (348)
51 3a04_A Tryptophanyl-tRNA synth 96.0 0.02 7E-07 59.3 9.5 61 339-404 207-270 (372)
52 2pid_A Tyrosyl-tRNA synthetase 92.4 0.057 1.9E-06 55.6 2.8 55 343-404 213-267 (356)
53 2yxn_A Tyrosyl-tRNA synthetase 91.7 0.051 1.8E-06 55.1 1.5 55 343-404 194-248 (322)
54 2ip1_A Tryptophanyl-tRNA synth 90.6 0.13 4.4E-06 54.2 3.4 59 341-404 250-309 (432)
55 2jan_A Tyrosyl-tRNA synthetase 90.3 0.11 3.8E-06 54.7 2.5 55 343-404 190-245 (432)
56 1r6u_A Tryptophanyl-tRNA synth 89.6 0.2 6.8E-06 52.8 3.7 59 345-408 261-320 (437)
57 1r6t_A Tryptophanyl-tRNA synth 89.4 0.21 7.2E-06 53.3 3.7 59 345-408 308-367 (477)
58 1h3f_A Tyrosyl-tRNA synthetase 89.3 0.15 5.2E-06 53.7 2.6 55 344-404 191-245 (432)
59 3i05_A Tryptophanyl-tRNA synth 89.2 0.16 5.5E-06 52.8 2.6 58 343-405 227-284 (395)
60 3hv0_A Tryptophanyl-tRNA synth 88.8 0.11 3.8E-06 54.0 1.1 58 343-405 223-281 (393)
61 3tze_A Tryptophanyl-tRNA synth 88.5 0.27 9.2E-06 51.3 3.7 58 342-404 245-303 (406)
62 3jxe_A Tryptophanyl-tRNA synth 88.1 0.16 5.4E-06 52.8 1.7 59 345-408 212-271 (392)
63 3hzr_A Tryptophanyl-tRNA synth 85.9 0.29 1E-05 50.7 2.2 54 345-404 229-283 (386)
64 1y42_X Tyrosyl-tRNA synthetase 85.8 0.27 9.1E-06 51.2 1.9 59 343-404 235-306 (392)
65 1jil_A Tyrrs, tyrosyl-tRNA syn 85.1 0.44 1.5E-05 50.0 3.2 57 342-404 188-244 (420)
66 2ts1_A Tyrosyl-tRNA synthetase 84.7 0.41 1.4E-05 50.2 2.6 57 342-404 187-243 (419)
67 3foc_A Tryptophanyl-tRNA synth 81.1 0.4 1.4E-05 50.6 0.9 55 345-404 292-347 (451)
68 3hzr_A Tryptophanyl-tRNA synth 79.4 1.8 6.2E-05 44.7 5.1 45 123-173 81-125 (386)
69 1i6k_A TRPRS, tryptophanyl-tRN 79.2 0.88 3E-05 46.1 2.6 38 129-172 5-42 (328)
70 1i6k_A TRPRS, tryptophanyl-tRN 78.5 0.32 1.1E-05 49.4 -0.9 55 344-405 141-209 (328)
71 2cyc_A Tyrosyl-tRNA synthetase 73.3 0.81 2.8E-05 47.3 0.5 57 345-405 185-266 (375)
72 2pid_A Tyrosyl-tRNA synthetase 73.1 2.4 8.3E-05 43.3 4.0 42 125-173 47-89 (356)
73 1y42_X Tyrosyl-tRNA synthetase 72.1 2.5 8.5E-05 43.8 3.8 39 129-173 68-107 (392)
74 2ts1_A Tyrosyl-tRNA synthetase 71.3 3 0.0001 43.6 4.3 40 129-174 34-74 (419)
75 2yxn_A Tyrosyl-tRNA synthetase 70.7 2.6 8.9E-05 42.5 3.5 39 129-173 37-76 (322)
76 1jil_A Tyrrs, tyrosyl-tRNA syn 68.3 3.3 0.00011 43.4 3.8 39 129-173 36-75 (420)
77 3jxe_A Tryptophanyl-tRNA synth 67.5 3.3 0.00011 42.9 3.5 41 125-172 74-115 (392)
78 3i05_A Tryptophanyl-tRNA synth 66.7 5.1 0.00017 41.5 4.8 44 123-172 77-121 (395)
79 2ip1_A Tryptophanyl-tRNA synth 65.8 4.1 0.00014 42.7 4.0 42 125-172 103-145 (432)
80 3prh_A Tryptophanyl-tRNA synth 65.6 0.93 3.2E-05 46.9 -1.0 38 129-172 39-76 (388)
81 1h3f_A Tyrosyl-tRNA synthetase 65.4 5 0.00017 42.1 4.5 45 125-176 38-83 (432)
82 2jan_A Tyrosyl-tRNA synthetase 63.8 4.9 0.00017 42.1 4.1 42 129-176 36-78 (432)
83 3hv0_A Tryptophanyl-tRNA synth 63.3 5.2 0.00018 41.4 4.1 44 125-174 75-119 (393)
84 3foc_A Tryptophanyl-tRNA synth 60.1 7.5 0.00026 40.9 4.6 45 123-173 90-135 (451)
85 1r6t_A Tryptophanyl-tRNA synth 57.5 11 0.00036 40.1 5.3 45 123-174 154-200 (477)
86 1r6u_A Tryptophanyl-tRNA synth 55.8 11 0.00037 39.6 4.9 48 123-176 107-155 (437)
87 2cyc_A Tyrosyl-tRNA synthetase 54.6 6.4 0.00022 40.5 3.0 38 129-172 37-75 (375)
88 3sz3_A Tryptophanyl-tRNA synth 52.8 5.1 0.00017 40.6 1.8 38 129-172 10-47 (341)
89 3prh_A Tryptophanyl-tRNA synth 50.5 6.3 0.00022 40.6 2.1 56 345-404 176-242 (388)
90 3tze_A Tryptophanyl-tRNA synth 50.5 14 0.00048 38.3 4.8 43 123-172 100-144 (406)
91 3n9i_A Tryptophanyl-tRNA synth 47.9 2.4 8.1E-05 43.2 -1.6 57 345-404 157-223 (346)
92 3sz3_A Tryptophanyl-tRNA synth 44.1 3.4 0.00011 42.0 -1.1 57 345-404 148-217 (341)
93 3n9i_A Tryptophanyl-tRNA synth 42.4 8.7 0.0003 39.0 1.6 37 129-172 19-56 (346)
94 1v54_E Cytochrome C oxidase po 30.7 15 0.00051 30.2 0.9 24 559-582 81-104 (109)
95 1iio_A Conserved hypothetical 29.0 57 0.0019 25.6 3.9 66 3-69 6-81 (84)
96 3r6u_A Choline-binding protein 28.8 40 0.0014 33.0 3.9 41 136-176 12-56 (284)
97 2wh6_B BCL-2-like protein 11; 25.9 40 0.0014 19.9 1.9 18 524-541 7-24 (26)
98 1pq1_B BCL2-like protein 11; B 25.9 52 0.0018 20.6 2.5 18 525-542 8-25 (33)
99 1qm9_A Polypyrimidine tract-bi 21.5 1.7E+02 0.0057 25.9 6.5 35 135-169 120-154 (198)
100 2adc_A Polypyrimidine tract-bi 21.3 2.4E+02 0.0081 25.8 7.7 36 135-170 151-186 (229)
101 4ar0_A Type IV pilus biogenesi 21.3 91 0.0031 26.5 4.2 62 90-165 33-94 (128)
No 1
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=8.9e-112 Score=943.96 Aligned_cols=562 Identities=27% Similarity=0.413 Sum_probs=473.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhh--cccccc
Q psy5226 1 MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQ--QKNYIK 78 (582)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~--~~~~~~ 78 (582)
|++++++.|.+.+.+++.++..+ ....+.|+.|++++|||||||+||.|||.+|++|++||++|+++|+. ++
T Consensus 1 m~~~~~~~i~~~~~~a~~~~~~~--~~~~~~v~~~~~~~~GD~~~n~a~~lak~~~~~P~~iA~~i~~~l~~~~~~---- 74 (629)
T 2zue_A 1 MLMEIRESVKERIEEIIKEIAPQ--WEGEIELKETPDPKLGDFGTPIAFKLAKLLKRPPIEIAEKIVEKLKLNLPE---- 74 (629)
T ss_dssp -CCTTHHHHHHHHHHHHHHHCTT--CCCCCCCEECSSGGGCSEEECHHHHHHHHHTSCHHHHHHHHHHHHTTSCCT----
T ss_pred CcHHHHHHHHHHHHHHHHhcCcc--ccccceeeCCCCCCCCceeHHHHHHHHHHcCCCHHHHHHHHHHHhhhccCC----
Confidence 67778888999999988876332 22356689999999999999999999999999999999999999975 55
Q ss_pred ceeeEEeecCcEEEEEeCchHH-HHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHH
Q psy5226 79 LIQSIEIIKPGFINLKISSSIK-QKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFI 157 (582)
Q Consensus 79 ~i~~v~~~~~GfiN~~l~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~ 157 (582)
.|++|+++| |||||+|+++++ ..++..++..+++||..+.+++++|+||||||||+||+||||+||+||||+|+|+|+
T Consensus 75 ~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~ 153 (629)
T 2zue_A 75 GIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILR 153 (629)
T ss_dssp TEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHH
Confidence 799999999 999999999954 567788888899999887788999999999999999999999999999999999999
Q ss_pred HcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhc-c--------CCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhH
Q psy5226 158 SQGYKVTREFYYNDTGVQITNLALSVQARAKAIF-L--------GKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSIN 228 (582)
Q Consensus 158 ~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~-~--------~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 228 (582)
++||+|+++||+||||+|||+++++.. +++... . .....|.++|+|.+|.+.++.+.. .+++.++.++.
T Consensus 154 ~~G~~V~~~~~i~D~G~Q~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~-~~~~~~~~~~~ 231 (629)
T 2zue_A 154 FLGYEVEVQNYIDDLGIQFAQVYWGYL-RLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLED-NPELENEIRDI 231 (629)
T ss_dssp HTTCEEEEEEEECTTSHHHHHHHHHHH-HCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHH-CGGGHHHHHHH
T ss_pred HcCCCceEEecccchhHHHHHHHHHHH-HhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhc-CchHHHHHHHH
Confidence 999999999999999999999998743 332210 0 000225567899999888877653 34454444433
Q ss_pred HH--hCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCee-----eeCCcEEE
Q psy5226 229 II--ANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTY-----YKDGALWL 301 (582)
Q Consensus 229 ~~--e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~-----~~~Ga~~~ 301 (582)
+. |.+| ..|+.++ +.+++.|+++|++|||+||.|.+||+.++.+.++++++.|+++|++| +++|++||
T Consensus 232 ~~~~e~gd-~~~~~~~----~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v 306 (629)
T 2zue_A 232 MKKLESGE-LYGRKLA----EEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVM 306 (629)
T ss_dssp HHHHHHSS-SCCHHHH----HHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEE
T ss_pred HHhccccc-HHHHHHH----HHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEE
Confidence 32 5666 4566555 66778899999999999999999998877889999999999999999 88999999
Q ss_pred EeccCCCCcc---eEEEccCCccccchhhHHHHHhh---------hh-c-------------------CCceEEEEEecC
Q psy5226 302 RTTDYGDDKD---RVVRKSNGDFTYFVSDIAYHIFK---------WE-R-------------------GFIQAINIQGDD 349 (582)
Q Consensus 302 ~~~~~g~~~~---~vl~ksDG~~~Y~~~DiA~~~~r---------~~-~-------------------~~d~~i~V~g~d 349 (582)
++++||++++ ++++||||+++|+++|+||++|| .. . ++|++|||||.+
T Consensus 307 ~~~~~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~ 386 (629)
T 2zue_A 307 DLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAE 386 (629)
T ss_dssp ECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGG
T ss_pred ECcccCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCc
Confidence 9999998877 89999999999999999999995 43 1 789999999999
Q ss_pred cchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCC--CcccHHHHHHHHHh-----hhhcCCCh--h
Q psy5226 350 HQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSG--SYITIRNLIKWLSK-----TESKNDSI--E 420 (582)
Q Consensus 350 h~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G--~~v~l~dll~~~~~-----~~~~~~~~--~ 420 (582)
|++||.+++++++++ |+++....+.|++|+++..+|+ |||||+| |+|+++||++++.+ +.++++.. +
T Consensus 387 q~~~~~~l~~~l~~l--G~~~~~~~~~h~~~g~V~~~~~--KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~ 462 (629)
T 2zue_A 387 QKHPQLAIKYALQLL--GFEDAAANLYHLAYEHVERPEG--KFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDE 462 (629)
T ss_dssp GHHHHHHHHHHHHHT--TCHHHHHTEEEEEECCEEBTTB--CCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred HhhHHHHHHHHHHHc--CCCCCCCeEEEEEeeeEEcCCC--cccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchh
Confidence 999999999999999 9975212456664443333666 9999999 99999999999754 24566543 3
Q ss_pred hHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcc-----cccccCCC
Q psy5226 421 FREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSL-----ISIKDLSS 493 (582)
Q Consensus 421 ~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~-----~~~~d~~~ 493 (582)
+.+++ .+|++|+||++|+.++.++++|||+.+++ .++|++||+||+|+|+|||+||++..+..+ ....++ .
T Consensus 463 ~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~-~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~-~ 540 (629)
T 2zue_A 463 EKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLN-FEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADF-T 540 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSC-CSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCC-S
T ss_pred hHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHH-HhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccc-c
Confidence 44444 37999999999999999999999999999 577899999999999999999986544210 012233 2
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHHHHh
Q psy5226 494 LNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKL 573 (582)
Q Consensus 494 l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~l 573 (582)
+.++.|++|+..|.+||+++.+|+++++||.+|+||++||+.||+||++|||+.++++++.+||+||.+|++||++||.|
T Consensus 541 l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~l 620 (629)
T 2zue_A 541 KLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYL 620 (629)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999877777889999999999999999999
Q ss_pred cCCCCCCCC
Q psy5226 574 IGISAPTKM 582 (582)
Q Consensus 574 LGi~~~e~M 582 (582)
|||+|||||
T Consensus 621 LGI~ape~M 629 (629)
T 2zue_A 621 MGIEAPERM 629 (629)
T ss_dssp TTCCCCSCC
T ss_pred cCCCccccC
Confidence 999999999
No 2
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=1.3e-111 Score=935.95 Aligned_cols=554 Identities=23% Similarity=0.290 Sum_probs=451.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeE
Q psy5226 4 EEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSI 83 (582)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v 83 (582)
++.+.+++.|.+++.+++..........|+.|++++||||++|++|. |.+|++|++||++|+++|+.++ .|+++
T Consensus 30 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~~~GD~a~~~~~~--k~~~~~P~~iA~~i~~~l~~~~----~i~~v 103 (607)
T 1f7u_A 30 NIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPRL--RIKGANPKDLAVQWAEKFPCGD----FLEKV 103 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSGGGCSEEEEGGGG--CCTTCCHHHHHHHHHHTCCCTT----TEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCccccccceeCCCCCCCCchhhHHHHH--HhcCCCHHHHHHHHHHhccccC----ceeEE
Confidence 46677888888888876531001122358899999999999997763 9999999999999999997666 79999
Q ss_pred EeecCcEEEEEeCchHHHH-HHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCe
Q psy5226 84 EIIKPGFINLKISSSIKQK-IIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYK 162 (582)
Q Consensus 84 ~~~~~GfiN~~l~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~ 162 (582)
+++|| ||||+|+++++.+ ++..++..+++||..+.+++++|+||||||||+|||||||+||+||||+|+|+|+++||+
T Consensus 104 e~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~ 182 (607)
T 1f7u_A 104 EANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWE 182 (607)
T ss_dssp EEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCE
T ss_pred EEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCC
Confidence 99996 9999999999986 677788888999987778899999999999999999999999999999999999999999
Q ss_pred eEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHc------CccchhhhhHHH--hCCC
Q psy5226 163 VTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKK------KIISKDRSINII--ANGK 234 (582)
Q Consensus 163 V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~------~~~~~~~~~~~~--e~~d 234 (582)
|+++||+||||+|||++++| +.+|++..... ..|.+++. ..+....+.+.+.. +.+.+.+++.+. |.++
T Consensus 183 V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~-~~~i~~l~-~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd 259 (607)
T 1f7u_A 183 VIRMNYLGDWGKQFGLLAVG-FERYGNEEALV-KDPIHHLF-DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD 259 (607)
T ss_dssp EEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHH-HCHHHHHH-HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTC
T ss_pred eeEEEeecCcchHHHHHHHH-HHHhCchhhcc-CCChHHHH-HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998 66664210000 00111111 11122222222110 112222222221 5688
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcc
Q psy5226 235 IND---LKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKD 311 (582)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~ 311 (582)
++. |+.++ +.+++.|+++|++|||+||.|.+||+.+ .+.++++++.|+++|++|+++|++||++++||++.+
T Consensus 260 ~e~~~~w~~~~----~~~~~~~~~~~~~L~V~fD~~~~ES~~~-~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d 334 (607)
T 1f7u_A 260 EEALKIWKRFR----EFSIEKYIDTYARLNIKYDVYSGESQVS-KESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLG 334 (607)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHTTCCCSEEEEGGGCC-HHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTC
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHcCCcceeecCcchhh-hhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCC
Confidence 754 55555 5566889999999999999999999644 257899999999999999999999999999987665
Q ss_pred -eEEEccCCccccchhhHHHHHhhhh-cCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCee
Q psy5226 312 -RVVRKSNGDFTYFVSDIAYHIFKWE-RGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKE 389 (582)
Q Consensus 312 -~vl~ksDG~~~Y~~~DiA~~~~r~~-~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~ 389 (582)
++++||||+++|.|+|||+|+||+. +++|++|||||.+|++||+|++++++++ |++++. .+.|++|+.+.
T Consensus 335 ~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~l--G~~~~~-~~~Hv~fg~v~----- 406 (607)
T 1f7u_A 335 KAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQM--GFEWAK-DLQHVNFGMVQ----- 406 (607)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHT--TCGGGG-GEEEECCCCEE-----
T ss_pred ceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHc--CCCcCc-EEEEecccccc-----
Confidence 7899999999999999999999995 6999999999999999999999999999 997653 69999997652
Q ss_pred eecccCCCCcccHHHHHHHHHhh----hhcCCC----hhhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCC
Q psy5226 390 VKISKRSGSYITIRNLIKWLSKT----ESKNDS----IEFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDEN 459 (582)
Q Consensus 390 ~KMSkr~G~~v~l~dll~~~~~~----~~~~~~----~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n 459 (582)
|||||+||+|+++||++++... ..+++. .++.+++ ++|++++||++|+.++.++++|||+++++ .++|
T Consensus 407 -kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~-~~g~ 484 (607)
T 1f7u_A 407 -GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLS-FEGD 484 (607)
T ss_dssp -SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHC-CSSS
T ss_pred -cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHH-Hhcc
Confidence 7999999999999999998541 112221 1222333 47999999999999999999999999999 7778
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhh
Q psy5226 460 PVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGY 539 (582)
Q Consensus 460 ~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~f 539 (582)
+||||||||||+|||+||+.....+.....+++.+.++.|++|++.|.+||+++.+|+++++||.+|+||++||+.||+|
T Consensus 485 t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~f 564 (607)
T 1f7u_A 485 TGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSC 564 (607)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999984211000012244446689999999999999999999999999999999999999999999
Q ss_pred hhcccccCCChhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 540 YNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 540 y~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
|++|||++++++++.+||+||.+|++||++||+||||+|||||
T Consensus 565 Y~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~perM 607 (607)
T 1f7u_A 565 YDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM 607 (607)
T ss_dssp HHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 9999999888888899999999999999999999999999999
No 3
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=4.2e-104 Score=849.24 Aligned_cols=453 Identities=33% Similarity=0.580 Sum_probs=410.3
Q ss_pred EEeCchHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 93 LKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
|+|+++++.+++.+++..++.||..+. ++++|+||||||||+|||||||+||++|||+|+|+++++||+|+++||+|||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 689999999999999999999998776 8899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHh-hccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHH
Q psy5226 173 GVQITNLALSVQARAKA-IFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRR 251 (582)
Q Consensus 173 G~q~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~ 251 (582)
|+|||+|+.|++.+|.+ ..+.++.+|+++|.|.|+.++++.+.++.+ +.+. .+ +.+..+|+++++.+++
T Consensus 80 G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~-------~~~~--~~-~~~~~~~~~~~~~~l~ 149 (464)
T 3fnr_A 80 GNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFG-------KEFF--SE-ENIPSLADWAKDKMLV 149 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHC-------GGGC--SG-GGHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcc-------hhhc--Cc-HHHHHHHHHHHHHHHH
Confidence 99999999999999987 666677789999999999999988776532 1111 12 2356777788888899
Q ss_pred HHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcceEEEccCCccccchhhHHHH
Q psy5226 252 EQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYH 331 (582)
Q Consensus 252 ~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~~~DiA~~ 331 (582)
.++++|++|||+||.|++||++|. .++++++.|+++|++|++|||+||+++++|++++++|+||||++||+|+||||+
T Consensus 150 ~~~~~~~~l~V~fD~~~~Ess~~~--~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~t~DiA~~ 227 (464)
T 3fnr_A 150 LIKQNLEQAKIKIDSYVSERSYYD--ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYH 227 (464)
T ss_dssp HHHHHHHHTTCCCSCEEEGGGGST--THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeecCHHHHHH--HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehhhHHHHHH
Confidence 999999999999999999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh
Q psy5226 332 IFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK 411 (582)
Q Consensus 332 ~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~ 411 (582)
++|+++++|++|||+|+||++||++++++++++ |++++++.++++|||++.++|+++|||||+||+|+++|+++++
T Consensus 228 ~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~l--G~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~-- 303 (464)
T 3fnr_A 228 KDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL--GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEI-- 303 (464)
T ss_dssp HHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTT--TCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHH--
T ss_pred HHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHc--CCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhc--
Confidence 999999999999999999999999999999999 9987766788899998888998889999999999999999999
Q ss_pred hhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccC
Q psy5226 412 TESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDL 491 (582)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~ 491 (582)
|++++||++++..+.+|++|||+.+.++.++|+++|+||+|+|++|++||++..+.+ +...++
T Consensus 304 ----------------g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~-~~~~~~ 366 (464)
T 3fnr_A 304 ----------------GSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDD-VMKADL 366 (464)
T ss_dssp ----------------CHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTT-STTCCC
T ss_pred ----------------cHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCC-ccccCh
Confidence 999999999999999999999999999777888889999999999999998765432 112345
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHHH
Q psy5226 492 SSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGL 571 (582)
Q Consensus 492 ~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L 571 (582)
+.+.++ |+.|+..+.+||+++.+++++++||.+|+||++||+.||+||++|||++++++++.+||+||.+| ||++||
T Consensus 367 ~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL 443 (464)
T 3fnr_A 367 QSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAF 443 (464)
T ss_dssp TTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHH
T ss_pred hhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 556555 99999999999999999999999999999999999999999999999987778899999999999 999999
Q ss_pred HhcCCCCCCCC
Q psy5226 572 KLIGISAPTKM 582 (582)
Q Consensus 572 ~lLGi~~~e~M 582 (582)
.||||+|||||
T Consensus 444 ~lLGi~ape~m 454 (464)
T 3fnr_A 444 SLMGIEAKNKM 454 (464)
T ss_dssp HHTTCCCCSCC
T ss_pred HhcCCCchHHh
Confidence 99999999999
No 4
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=4.4e-104 Score=879.86 Aligned_cols=533 Identities=23% Similarity=0.338 Sum_probs=443.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeEE
Q psy5226 5 EKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIE 84 (582)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v~ 84 (582)
+++.|++.|.+++.++.. .+.+.|+.|++++|||||||+ |.|||.+|++|++||++|+++|+.++ .|++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~gD~~~~~-~~lak~~~~~P~~iA~~i~~~l~~~~----~~~~~~ 72 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV----PVRLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQELKDRLPLPE----FVEEAV 72 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC----CCCCCCEECSTTSSCSEEEEC-SHHHHHTTSCHHHHHHHHHHTCCCCT----TEEEEE
T ss_pred hHHHHHHHHHHHHHhcCC----CccceeeCCCCCCCCcchhhH-HHHHHHcCCCHHHHHHHHHHhccccC----cEEEEE
Confidence 355677777777776521 134568899999999999995 99999999999999999999997656 799999
Q ss_pred eecCcEEEEEeCchHHH-HHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCee
Q psy5226 85 IIKPGFINLKISSSIKQ-KIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKV 163 (582)
Q Consensus 85 ~~~~GfiN~~l~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V 163 (582)
++| |||||+|+++++. .++..++..++.|| +|+||||||||+||+||||+||+|+||+|+|+||++||+|
T Consensus 73 ~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g--------~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V 143 (592)
T 1iq0_A 73 PVG-GYLNFRLRTEALLREALRPKAPFPRRPG--------VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREV 143 (592)
T ss_dssp EET-TEEEEEECHHHHHHHHHSCCCCCCCEEE--------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EcC-CEEEEEECHHHHHHHHHHHHHhcCcccC--------eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCce
Confidence 999 9999999999655 45555666677776 7999999999999999999999999999999999999999
Q ss_pred EEEEeecCchhHHHHHHHHHHHHHHhhccCCCC--CCCCCCCcccHHHHHHHHHHHcCccchhhhhHH--HhCCCHHHHH
Q psy5226 164 TREFYYNDTGVQITNLALSVQARAKAIFLGKST--WPDTAYNGEYITDIAKCFLKKKKIISKDRSINI--IANGKINDLK 239 (582)
Q Consensus 164 ~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~--~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~--~e~~d~~~~~ 239 (582)
+++||+||||+|||++++|. .+ .|.+.. .+.++|.|++|.++++.+.+. ++.+.+++.+ .+.++.
T Consensus 144 ~~~~~i~D~G~q~~~li~~~-~~----~g~d~~~~~~~d~~~g~~y~~~~~~~~~~--~~~~~a~~~~~~~e~g~~---- 212 (592)
T 1iq0_A 144 LVLNYIDDTGRQAAETLFAL-RH----YGLTWDGKEKYDHFAGRAYVRLHQDPEYE--RLQPAIEEVLHALERGEL---- 212 (592)
T ss_dssp EEEEEECTTSHHHHHHHHHH-HH----TTCCCCSSSCHHHHHHHHHHHHHHCTTTG--GGHHHHHHHHHHHHTTTT----
T ss_pred EEEeccCCcchHHHHHHHHH-HH----hCCcccCCCCcchhHHHHHHHHHHHHHhh--hHHHHHHHHHHhCCchHH----
Confidence 99999999999999999863 22 233322 245677788887777544322 2222222212 145551
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCee-----eeCCcEEEEeccCCCCcc---
Q psy5226 240 AIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTY-----YKDGALWLRTTDYGDDKD--- 311 (582)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~-----~~~Ga~~~~~~~~g~~~~--- 311 (582)
+..++.+++.|+++|++|||+||.|.+||+.++.+.++++++.|+++|++| +.+|++||++++||++++
T Consensus 213 ---~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~~ 289 (592)
T 1iq0_A 213 ---REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPF 289 (592)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCE
T ss_pred ---HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCCCc
Confidence 334477889999999999999999999998877889999999999999999 889999999999998877
Q ss_pred eEEEccCCccccchhhHHHHHhh--------hh-c--------------------CCceEEEEEecCcchhHHHHHHHHH
Q psy5226 312 RVVRKSNGDFTYFVSDIAYHIFK--------WE-R--------------------GFIQAINIQGDDHQGTITRVKAGLQ 362 (582)
Q Consensus 312 ~vl~ksDG~~~Y~~~DiA~~~~r--------~~-~--------------------~~d~~i~V~g~dh~~~~~~~~~~l~ 362 (582)
++++||||+++|+++|+||++|| .. + ++|++|||||.+|.+||++++++++
T Consensus 290 ~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~ 369 (592)
T 1iq0_A 290 FVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALA 369 (592)
T ss_dssp EEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHH
T ss_pred eEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHH
Confidence 89999999999999999999994 43 1 7899999999999999999999999
Q ss_pred HHHcCCCCCCCcEEEE--EEEEEeeCCeeeecccCCCCcccHHHHHHHHHh-----hhhcCCChhhHhhh--hcchhhHH
Q psy5226 363 AINIGIPNDYPNYILH--KMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK-----TESKNDSIEFREDL--IRGRDLMR 433 (582)
Q Consensus 363 ~l~~G~~~~~~~~~~~--~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~-----~~~~~~~~~~~~~~--~~~~~air 433 (582)
++ |++++...+.|+ |||++ +|+ |||||+||+|+++|+++++.+ +.++++..++.+++ .+|++++|
T Consensus 370 al--G~~~~~~~~~H~~~g~v~~--~g~--KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiR 443 (592)
T 1iq0_A 370 LA--GYPALAEKAHHLAYETVLL--EGR--QMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIR 443 (592)
T ss_dssp HT--TCHHHHTTEEEEEECCEEE--TTB--CSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHH
T ss_pred Hc--CCCCCCCcEEEEEeeEEEc--CCC--cccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHH
Confidence 99 996521256666 55655 677 999999999999999999754 24455544444444 37999999
Q ss_pred HHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHH
Q psy5226 434 FFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVL 513 (582)
Q Consensus 434 y~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v 513 (582)
||+|++++.++++|||+++++ .++++++|+||+|+|+|||++|++..+.+ ++ .+.++.|++|+..+.+||+++
T Consensus 444 yf~L~~~~~~~~~Fd~d~~~~-~~~~~~~ylqya~aR~~sil~k~~~~~~~-----~~-~l~~~~e~~L~~~l~~~~~~v 516 (592)
T 1iq0_A 444 FSMVKTEPKKQIDFRYQEALS-FEGDTGPYVQYAHARAHSILRKAGEWGAP-----DL-SQATPYERALALDLLDFEEAV 516 (592)
T ss_dssp HHHHHSCTTSCEEECHHHHHC-SSSSSHHHHHHHHHHHHHHHHHHCCCCCC-----CG-GGCCHHHHHHHHHHTTHHHHH
T ss_pred HHHHhcCCCCCCeecHHHHHH-HhccchHHHHHHHHHHHHHHHhhcccCCC-----cc-CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 56679999999999999999998754321 22 234788999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHhhhhcc-------cccCCChhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 514 VNSVKDLCPHYVAFYLRDLAKELHGYYNTE-------RILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 514 ~~a~~~~~p~~l~~yl~~La~~~n~fy~~~-------~vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
.+|+++++||.+|+||++||+.||+||++| +|++++++++.+||+||.++++||++||.||||+|||||
T Consensus 517 ~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~e~M 592 (592)
T 1iq0_A 517 LEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAPEVM 592 (592)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 999999999999999999999999999999 999877778899999999999999999999999999999
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=4e-43 Score=387.61 Aligned_cols=365 Identities=18% Similarity=0.201 Sum_probs=260.6
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
+++++.|....|||+|++||||+|++++||+++|++|.+||+|.++++++|+|.++-..+.
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~------------------- 83 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSAR------------------- 83 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHH-------------------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHH-------------------
Confidence 3458999888999999999999999999999999999999999999999999987642211
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChH
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVS 280 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~ 280 (582)
+ +..+|+ .+ ++.+.+.|+++|++|||+||.|.++++..+.+.++
T Consensus 84 ----------------~-------------~g~~~~---~~----~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~ 127 (536)
T 4dlp_A 84 ----------------K-------------EGITPR---DL----ADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQ 127 (536)
T ss_dssp ----------------H-------------HTSCHH---HH----HHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHH
T ss_pred ----------------H-------------cCCCHH---HH----HHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHH
Confidence 0 112332 22 37778889999999999999998888765568899
Q ss_pred HHHHHHHHcCCeeeeCCcEEEEe---------------------------------------ccCC--------------
Q psy5226 281 LVTKLLIQSGKTYYKDGALWLRT---------------------------------------TDYG-------------- 307 (582)
Q Consensus 281 ~~i~~L~~~g~~~~~~Ga~~~~~---------------------------------------~~~g-------------- 307 (582)
+++++|.++|++|+.++.+|+.. +++.
T Consensus 128 ~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i 207 (536)
T 4dlp_A 128 AIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFI 207 (536)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCcc
Confidence 99999999999998766655422 1110
Q ss_pred ---------------CCcceEEEccC-----------Cccccchhh--HHHH---Hh-----hhhcCCceEEEEEecCcc
Q psy5226 308 ---------------DDKDRVVRKSN-----------GDFTYFVSD--IAYH---IF-----KWERGFIQAINIQGDDHQ 351 (582)
Q Consensus 308 ---------------~~~~~vl~ksD-----------G~~~Y~~~D--iA~~---~~-----r~~~~~d~~i~V~g~dh~ 351 (582)
..+|+.|.|++ +...|+.-| ++|. .| ++++.+...++++|.||+
T Consensus 208 ~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~ 287 (536)
T 4dlp_A 208 MPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDIS 287 (536)
T ss_dssp ESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGH
T ss_pred CcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHH
Confidence 11344566652 334444433 3331 11 222222234899999998
Q ss_pred hhHHHHH--HHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcch
Q psy5226 352 GTITRVK--AGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGR 429 (582)
Q Consensus 352 ~~~~~~~--~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~ 429 (582)
. |..++ +.+.++ |++++. .+..+||+++ +|+ |||||+||+|++.|+++++ |+
T Consensus 288 ~-fh~~~~~a~l~a~--g~~~~~-~v~~hg~v~~--~G~--KMSKS~GNvi~p~d~i~~~------------------Ga 341 (536)
T 4dlp_A 288 R-FHAVYWPAFLMSA--QLPLPK-RVFAHGFLFN--RGE--KMSKSVGNVIDPFELVERY------------------GL 341 (536)
T ss_dssp H-HHHTHHHHHHHHT--TCCCCS-CEEEECCEEC----------------CCHHHHHHHH------------------CH
T ss_pred H-HHHHHHHHHHHHC--CCCCCc-EEEeeeeEee--CCc--eecccCCCCCCHHHHHHHc------------------Cc
Confidence 6 22222 445566 998774 7888899965 788 9999999999999999999 99
Q ss_pred hhHHHHHhc-cCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhc
Q psy5226 430 DLMRFFLIS-RKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSN 508 (582)
Q Consensus 430 ~airy~~l~-~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~ 508 (582)
|++||++++ ....+|++||++.+.+..+.+..+.++|+++|+++++.+...+..| . ...+ .+.++.|+..+.+
T Consensus 342 DalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p---~--~~~~-~~~d~~ll~~l~~ 415 (536)
T 4dlp_A 342 DQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVP---Q--PGAF-SEADKAILDQADA 415 (536)
T ss_dssp HHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCC---C--CCCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---C--cccC-CHHHHHHHHHHHH
Confidence 999999999 5779999999999988776667778899999999999887654433 1 1123 5778889999999
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc--cCCChhhhHHHHHHHHHHHHHHHHHHHhc
Q psy5226 509 YPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI--LVKNITIKMARLALIYSIGQVLNNGLKLI 574 (582)
Q Consensus 509 f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v--l~~~~~~~~~RL~L~~a~~~vL~~~L~lL 574 (582)
+++.+.+++++++|+.+++++++++..+|.|++.++. +..+ ....+..++..+..+|+.++.||
T Consensus 416 ~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~--~~~~~~~~~~~l~~~l~~~~~lL 481 (536)
T 4dlp_A 416 ALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKT--DPARMGTVLYVTAEVLRRVGIMV 481 (536)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCC--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998863 3211 11223344445555555555554
No 6
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=5.4e-43 Score=387.91 Aligned_cols=344 Identities=16% Similarity=0.130 Sum_probs=260.5
Q ss_pred CCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhcc
Q psy5226 113 KFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFL 192 (582)
Q Consensus 113 ~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~ 192 (582)
-||....++++++.|..++|||+|++||||+|++++||+++|++|.+||+|.++++++|+|+++-..+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~----------- 84 (564)
T 3kfl_A 16 TQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAA----------- 84 (564)
T ss_dssp --------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHH-----------
T ss_pred hcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHH-----------
Confidence 466655567789999999999999999999999999999999999999999999999999987632211
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccc
Q psy5226 193 GKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESS 272 (582)
Q Consensus 193 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~ 272 (582)
+ +..+|+ .+ ++++.+.|+++|++|||+||.|.++++
T Consensus 85 ------------------------~-------------~g~~p~---~~----~~~~~~~~~~~~~~lgi~~D~~~~t~~ 120 (564)
T 3kfl_A 85 ------------------------K-------------QGVSPM---DF----TTSVSSEFKQCFQEMNYDMNYFIRTTN 120 (564)
T ss_dssp ------------------------H-------------TTCCHH---HH----HHHHHHHHHHHHHHTTCCCSEEEETTS
T ss_pred ------------------------H-------------cCCCHH---HH----HHHHHHHHHHHHHHcCCCCCccccCCC
Confidence 0 112332 22 377788899999999999999988887
Q ss_pred cccCCChHHHHHHHHHcCCeeeeCCcEEE--------------------------------------------EeccCC-
Q psy5226 273 LYKTGKVSLVTKLLIQSGKTYYKDGALWL--------------------------------------------RTTDYG- 307 (582)
Q Consensus 273 ~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~--------------------------------------------~~~~~g- 307 (582)
..+.+.+++++++|.++|++|+.++..|+ +++++.
T Consensus 121 ~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~ 200 (564)
T 3kfl_A 121 PTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRE 200 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHH
Confidence 66668899999999999999976444332 111110
Q ss_pred ----------------------------CCcceEEEc---c-----------CCccccchhh-----HHHHHh---h---
Q psy5226 308 ----------------------------DDKDRVVRK---S-----------NGDFTYFVSD-----IAYHIF---K--- 334 (582)
Q Consensus 308 ----------------------------~~~~~vl~k---s-----------DG~~~Y~~~D-----iA~~~~---r--- 334 (582)
..+|..|.| + ++...|..-| ++...| +
T Consensus 201 ~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~ 280 (564)
T 3kfl_A 201 RLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGT 280 (564)
T ss_dssp HHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSC
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCcccccccc
Confidence 012334455 1 2334455445 222222 1
Q ss_pred ------h--hcCCceEEEEEecCcchhHHHH--HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 335 ------W--ERGFIQAINIQGDDHQGTITRV--KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 335 ------~--~~~~d~~i~V~g~dh~~~~~~~--~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
+ ++.+...++++|.||+. |..+ .+.+.++ |++++. .+..+||+. .+|+ |||||+||+|++.|
T Consensus 281 ~~~~~~~~~~~~wp~dv~~~GkDii~-FH~~~wpa~L~a~--g~~~~~-~v~~hg~v~--~~G~--KMSKS~GNvV~p~d 352 (564)
T 3kfl_A 281 ETLDEDHHALNRWPADVHVVGKDILK-FHAIYWPAFLMSA--ELPLPE-RLVSHGWWT--KDHK--KISKSLGNAFDPVE 352 (564)
T ss_dssp EEECSSSTTTTCCSCSEEEEEGGGHH-HHHTHHHHHHHHT--TCCCCS-CEEEECCEE--ETTE--ECCTTTTCCCCHHH
T ss_pred ccchhcchhhhcCccceEEEeecccc-hHHHHHHHHHHhC--CCCCCc-EEEEcccEe--eCCc--cccccCCCCCCHHH
Confidence 2 21122248999999886 2222 2556667 998774 888899984 4888 99999999999999
Q ss_pred HHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhc-cCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCC
Q psy5226 405 LIKWLSKTESKNDSIEFREDLIRGRDLMRFFLIS-RKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKK 483 (582)
Q Consensus 405 ll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~-~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~ 483 (582)
+++++ |+|++||++++ ....+|++||++.+.+..|++.+++++|+++|+++++. ...+..
T Consensus 353 ~i~~~------------------G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~-~~~g~~ 413 (564)
T 3kfl_A 353 KAKEF------------------GIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI-NVNGMW 413 (564)
T ss_dssp HHHHH------------------CHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT-STTSBC
T ss_pred HHHHc------------------CcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcC
Confidence 99999 99999999999 67799999999999987788889999999999999988 333333
Q ss_pred cccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccc
Q psy5226 484 SLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTER 544 (582)
Q Consensus 484 ~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~ 544 (582)
| . ...+ .+.++.|+..+.++++.+.+++++++++.+++++++++..+|.|++.++
T Consensus 414 p---~--~~~~-~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 414 P---E--PAEY-SESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA 468 (564)
T ss_dssp C---C--CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C---C--CCCC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 1 1123 5778889999999999999999999999999999999999999999886
No 7
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=2.9e-41 Score=363.98 Aligned_cols=332 Identities=18% Similarity=0.219 Sum_probs=252.6
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++|.+++|||||+|++||||+|++|+||+|+|+|++.||+|.++++++|+|..+- . +
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~---~----~-------------- 77 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII---K----R-------------- 77 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHH---H----H--------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHH---H----H--------------
Confidence 456799999999999999999999999999999999999999999999999995431 1 1
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-cccccccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKF-DNYCLESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~f-D~~~~ES~~~~~~~i 279 (582)
+ . +.|.+ |+.++ +++.+.|+++|++|||.+ |.+.++|+ | .+.+
T Consensus 78 ----------A---~---------------~~g~~--~~~~~----~~~~~~f~~~~~~LgI~~~d~~~r~t~-~-~~~~ 121 (461)
T 1li5_A 78 ----------A---N---------------ENGES--FVAMV----DRMIAEMHKDFDALNILRPDMEPRATH-H-IAEI 121 (461)
T ss_dssp ----------H---H---------------HTTCC--HHHHH----HHHHHHHHHHHHHTTCCCCSBCCBGGG-C-HHHH
T ss_pred ----------H---H---------------HcCCC--HHHHH----HHHHHHHHHHHHHcCCCCCcccccccc-h-HHHH
Confidence 0 1 12332 44444 667888999999999998 78888886 3 3678
Q ss_pred HHHHHHHHHcCCeeee-CCcEEEEeccCCC--------------------------CcceEEEcc--CCccccchh----
Q psy5226 280 SLVTKLLIQSGKTYYK-DGALWLRTTDYGD--------------------------DKDRVVRKS--NGDFTYFVS---- 326 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~-~Ga~~~~~~~~g~--------------------------~~~~vl~ks--DG~~~Y~~~---- 326 (582)
.++++.|.++|++|+. +|++||+++++.+ ..|.++.|+ +|.++|.+.
T Consensus 122 ~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g 201 (461)
T 1li5_A 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAG 201 (461)
T ss_dssp HHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSE
T ss_pred HHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCc
Confidence 9999999999999998 9999998766532 124567765 677777542
Q ss_pred ------hHHHHHhhhhcCCceEEEEEecCcch-hH-HHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC
Q psy5226 327 ------DIAYHIFKWERGFIQAINIQGDDHQG-TI-TRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS 398 (582)
Q Consensus 327 ------DiA~~~~r~~~~~d~~i~V~g~dh~~-~~-~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~ 398 (582)
.+.+..+++ ++....|++.|.|+.. |. ....++..++ |.+++ ..++|+||+++ +|+ |||||+||
T Consensus 202 ~PgWhiecsam~~~~-lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~--g~~~~-~~~~h~g~v~~--~G~--KMSKS~GN 273 (461)
T 1li5_A 202 RPGWHIECSAMNCKQ-LGNHFDIHGGGSDLMFPHHENEIAQSTCAH--DGQYV-NYWMHSGMVMV--DRE--KMSKSLGN 273 (461)
T ss_dssp EECSSHHHHHHHHHH-HCSSEEEEECBGGGTTTHHHHHHHHHHHHS--SSCCE-EEECCBCCEEE--TTB--CCCGGGTC
T ss_pred CCCccchhHHHHHHH-hCCCceEEeccCccCchHHHHHHHHHHHhc--CCCCC-cEEEEeeEEEE--CCe--EccccCCC
Confidence 111111111 1233445566999441 21 1122222335 88655 37889999987 788 99999999
Q ss_pred cccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhc
Q psy5226 399 YITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQW 478 (582)
Q Consensus 399 ~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~ 478 (582)
+|++.|+++++ |++++||++|+.++++|++|+++.+.+. ++++.|+.+++++.
T Consensus 274 ~v~~~dll~~~------------------g~dalR~~ll~~~~~~~~~fs~~~l~~~---------~~~l~rl~n~~~~~ 326 (461)
T 1li5_A 274 FFTVRDVLKYY------------------DAETVRYFLMSGHYRSQLNYSEENLKQA---------RAALERLYTALRGT 326 (461)
T ss_dssp CCBHHHHHTTS------------------CHHHHHHHHHSSCTTSCEEECHHHHHHH---------HHHHHHHHHHHTTC
T ss_pred ccChhHHhhhC------------------CHHHHHHHHHcCCcCCCCCCCHHHHHHH---------HHHHHHHHHHHHHh
Confidence 99999999988 9999999999999999999999998872 55678999999865
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHH-HhhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHH
Q psy5226 479 GGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSV-KDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARL 557 (582)
Q Consensus 479 ~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~-~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL 557 (582)
.. ..+ + + .+.++++.+.+++ ++++++.++.+|++|++.+|+|+++ + .
T Consensus 327 ~~-~~~------------~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~-~-----~------- 374 (461)
T 1li5_A 327 DK-TVA------------P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-D-----M------- 374 (461)
T ss_dssp CT-TSC------------C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-C-----H-------
T ss_pred hc-CCC------------H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc-c-----H-------
Confidence 21 110 1 1 2456788999999 8999999999999999999999975 2 1
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q psy5226 558 ALIYSIGQVLNNGLKLIGI 576 (582)
Q Consensus 558 ~L~~a~~~vL~~~L~lLGi 576 (582)
.++.++..+|..++.+|||
T Consensus 375 ~~~~~~~~~~~~~~~~lG~ 393 (461)
T 1li5_A 375 AAANAMASHLRKLSAVLGL 393 (461)
T ss_dssp HHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 2566677889999999999
No 8
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=3.5e-40 Score=365.97 Aligned_cols=366 Identities=17% Similarity=0.181 Sum_probs=273.3
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
..+++.|.-.-|||+|++||||+|++++||+++|++|..||+|..+.+++|+|.++-..+.
T Consensus 16 ~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~------------------- 76 (560)
T 3h99_A 16 VAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ------------------- 76 (560)
T ss_dssp -CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH-------------------
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHH-------------------
Confidence 4566777666678889999999999999999999999999999999999999987643221
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChH
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVS 280 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~ 280 (582)
+ +..+++ .+ ++.+.+.|+++|++|||.+|.+.++++..+.+.++
T Consensus 77 ----------------~-------------~g~~~~---~~----~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~ 120 (560)
T 3h99_A 77 ----------------Q-------------LGITPE---QM----IGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSE 120 (560)
T ss_dssp ----------------H-------------HTSCHH---HH----HHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHH
T ss_pred ----------------H-------------hCCCHH---HH----HHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHH
Confidence 0 112222 22 26677889999999999999998888655567889
Q ss_pred HHHHHHHHcCCeeeeCCcEEEEec---------------cC------CC-------------------------------
Q psy5226 281 LVTKLLIQSGKTYYKDGALWLRTT---------------DY------GD------------------------------- 308 (582)
Q Consensus 281 ~~i~~L~~~g~~~~~~Ga~~~~~~---------------~~------g~------------------------------- 308 (582)
+++++|.++|++|+.++.+|+... .+ |+
T Consensus 121 ~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~ 200 (560)
T 3h99_A 121 LIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDS 200 (560)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEE
T ss_pred HHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEec
Confidence 999999999999988877765221 00 11
Q ss_pred --------------------------------------CcceEEEccC---Cc--------cccchhh--HHHH--H--h
Q psy5226 309 --------------------------------------DKDRVVRKSN---GD--------FTYFVSD--IAYH--I--F 333 (582)
Q Consensus 309 --------------------------------------~~~~vl~ksD---G~--------~~Y~~~D--iA~~--~--~ 333 (582)
..|..|.|.. |. +.|..-| ++|. . |
T Consensus 201 ~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~ 280 (560)
T 3h99_A 201 EHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNL 280 (560)
T ss_dssp EEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHH
T ss_pred ceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHH
Confidence 1122333333 22 2233222 2220 0 1
Q ss_pred --------hhh--cCC---ceEEEEEecCcch-hHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc
Q psy5226 334 --------KWE--RGF---IQAINIQGDDHQG-TITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY 399 (582)
Q Consensus 334 --------r~~--~~~---d~~i~V~g~dh~~-~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~ 399 (582)
.++ |.. ..+++++|.||.. |.....+.+.++ |+++| ..+..+||+++ +|+ |||||+||+
T Consensus 281 ~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~--g~~~p-~~v~~hg~v~~--~G~--KMSKS~GNv 353 (560)
T 3h99_A 281 CDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGS--NFRKP-SNLFVHGYVTV--NGA--KMSKSRGTF 353 (560)
T ss_dssp HHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHT--TBCCC-SEEEEECCEEE--TTE--ECCTTTTCC
T ss_pred hhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhC--CCCCC-cEEEEEeEEEe--CCe--eccccCCCc
Confidence 111 112 2568899999885 333333556677 99877 58888999977 788 999999999
Q ss_pred ccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-C-CcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHh
Q psy5226 400 ITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-D-TDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQ 477 (582)
Q Consensus 400 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~-~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk 477 (582)
|++.|+++++ |.|++||++++..+ . +|++||++.+.+..+.+..+.++++++|+++++++
T Consensus 354 v~p~d~i~~~------------------GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~ 415 (560)
T 3h99_A 354 IKASTWLNHF------------------DADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK 415 (560)
T ss_dssp CBHHHHHHHS------------------CHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHH
T ss_pred CCHHHHHHHc------------------CcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999866 4 79999999998766666666788888999999998
Q ss_pred cCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc--cCCChhhhHH
Q psy5226 478 WGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI--LVKNITIKMA 555 (582)
Q Consensus 478 ~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v--l~~~~~~~~~ 555 (582)
...+..+ . .+.++.|+..+.++++.+.+++++++++.+++++++++..+|.||+.++. +..+++....
T Consensus 416 ~~~~~~~---~-------~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~ 485 (560)
T 3h99_A 416 RFDGVLA---S-------ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDAD 485 (560)
T ss_dssp HSTTBCC---S-------SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHH
T ss_pred hcCCCCC---C-------ccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHH
Confidence 7554332 1 12356699999999999999999999999999999999999999998864 3333333455
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q psy5226 556 RLALIYSIGQVLNNGLKLIGI 576 (582)
Q Consensus 556 RL~L~~a~~~vL~~~L~lLGi 576 (582)
+..++..+..+|+.++.||.-
T Consensus 486 ~~~~~~~~~~~l~~~~~lL~P 506 (560)
T 3h99_A 486 LQAICSMGINLFRVLMTYLKP 506 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 667778888999999888764
No 9
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=4.5e-38 Score=346.71 Aligned_cols=339 Identities=18% Similarity=0.215 Sum_probs=245.6
Q ss_pred CCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCC
Q psy5226 120 GSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPD 199 (582)
Q Consensus 120 ~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~ 199 (582)
+..+.+.|.-.-|||+|++||||+|+++++|+|+|+++..||+|.++..++|+|..+-.-
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~-------------------- 68 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAET-------------------- 68 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHH--------------------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHH--------------------
Confidence 445678888888999999999999999999999999999999999999999999754211
Q ss_pred CCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCCh
Q psy5226 200 TAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKV 279 (582)
Q Consensus 200 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i 279 (582)
+ .+ +..++ +.++ +.+.+.|++++++|||.+|.|.++++..+.+.+
T Consensus 69 -----------a---~~--------------~g~~~---~~~~----~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v 113 (524)
T 2x1l_A 69 -----------A---AK--------------EGIPA---AELA----RRNSDVFQRLQEKLNISFDRFIRTSDADHYEAS 113 (524)
T ss_dssp -----------H---HH--------------HTSCH---HHHH----HHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHH
T ss_pred -----------H---HH--------------cCCCH---HHHH----HHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHH
Confidence 1 10 11223 2233 667788999999999999999888864445678
Q ss_pred HHHHHHHHHcCCeeeeCCcEEEEecc--CCCCc----------------ceEE-Ecc------------------C-Cc-
Q psy5226 280 SLVTKLLIQSGKTYYKDGALWLRTTD--YGDDK----------------DRVV-RKS------------------N-GD- 320 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~Ga~~~~~~~--~g~~~----------------~~vl-~ks------------------D-G~- 320 (582)
++++++|.++|++|+.++.+|+.... +..+. ..+. +.+ + |.
T Consensus 114 ~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~ 193 (524)
T 2x1l_A 114 KAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPE 193 (524)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGG
T ss_pred HHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCC
Confidence 99999999999999998887764321 11110 0111 000 0 00
Q ss_pred cc--------------cchhhHHHHHhhhhcCC------c--------------------------------eEEEEEec
Q psy5226 321 FT--------------YFVSDIAYHIFKWERGF------I--------------------------------QAINIQGD 348 (582)
Q Consensus 321 ~~--------------Y~~~DiA~~~~r~~~~~------d--------------------------------~~i~V~g~ 348 (582)
.. +..+|.+..+.|+.||. + .-+++.|.
T Consensus 194 ~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~ 273 (524)
T 2x1l_A 194 FIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGK 273 (524)
T ss_dssp GEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEG
T ss_pred eeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEee
Confidence 00 00111111111111110 1 12677788
Q ss_pred CcchhHHHHH--HHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhh
Q psy5226 349 DHQGTITRVK--AGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLI 426 (582)
Q Consensus 349 dh~~~~~~~~--~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~ 426 (582)
||.. |..+. +.+.++ |++++. .+.++||++. +|+ |||||+||+|++.|+++++
T Consensus 274 D~~~-fh~~~~~a~l~~~--g~~~~~-~v~~hG~v~~--~G~--KMSKS~GN~v~p~d~i~~~----------------- 328 (524)
T 2x1l_A 274 DIIR-FHTVYWPAFLMSA--GLPLPK-RIFAHGWLLN--RGE--KMSKSIGNVVDPVNLVDTF----------------- 328 (524)
T ss_dssp GGHH-HHHTHHHHHHHHH--TCCCCS-CEEEECCEEE--CSC--SEETTTEESSCHHHHHHHH-----------------
T ss_pred chhH-hHHHHHHHHHHHC--CCCCCc-EEEECcEEEe--CCc--ccCCcCCCCCCHHHHHHHc-----------------
Confidence 8773 32222 344566 987764 6667799876 787 9999999999999999999
Q ss_pred cchhhHHHHHhc-cCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHH
Q psy5226 427 RGRDLMRFFLIS-RKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVK 505 (582)
Q Consensus 427 ~~~~airy~~l~-~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~ 505 (582)
|++++||++++ ..+.+|++||++.+.+..+.+..+.+.++..|+.+++++...+..+ . ...+ .+.++.|+..
T Consensus 329 -g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~---~--~~~~-~~~d~~l~~~ 401 (524)
T 2x1l_A 329 -GLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVP---D--PGEF-TDEDTALLAA 401 (524)
T ss_dssp -CHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCC---C--CCCC-CHHHHHHHHH
T ss_pred -ChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---C--cccc-chhHHHHHHH
Confidence 99999999998 6789999999999987655445556788889999998876443222 1 1122 5778889999
Q ss_pred HhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc
Q psy5226 506 LSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI 545 (582)
Q Consensus 506 l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v 545 (582)
+.++++.+.+++++++++.+++++++++..+|.|++.++.
T Consensus 402 l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 402 ADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999998864
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=8.1e-39 Score=350.47 Aligned_cols=330 Identities=17% Similarity=0.148 Sum_probs=240.5
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
.+++.|...+|||+|++||||+|+++++|+++|+++..||+|.++..++|+|..+-.-
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~---------------------- 61 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKK---------------------- 61 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTH----------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHH----------------------
Confidence 4689999999999999999999999999999999999999999999999999643210
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSL 281 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~ 281 (582)
+ . + +..+|+ .+ ++.+.+.|+++|++|||.+|.+.++++..+.+.+.+
T Consensus 62 ---------a---~-~-------------~g~~~~---~~----~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~ 108 (497)
T 2csx_A 62 ---------A---E-E-------------LGISPK---EL----VDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQK 108 (497)
T ss_dssp ---------H---H-H-------------SSSCHH---HH----HHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred ---------H---H-H-------------cCCCHH---HH----HHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHH
Confidence 1 1 0 112232 23 367778899999999999998877775323467899
Q ss_pred HHHHHHHcCCeeee--CCcEEEEeccC---------------CC------------------------------------
Q psy5226 282 VTKLLIQSGKTYYK--DGALWLRTTDY---------------GD------------------------------------ 308 (582)
Q Consensus 282 ~i~~L~~~g~~~~~--~Ga~~~~~~~~---------------g~------------------------------------ 308 (582)
++++|.++|++|+. .|.+|+.+..+ |.
T Consensus 109 ~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~ 188 (497)
T 2csx_A 109 VFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDY 188 (497)
T ss_dssp HHHHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHH
T ss_pred HHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHH
Confidence 99999999999986 56665543221 00
Q ss_pred ------------CcceEEEc--cC---Ccccc--------chhh-----HHHHHh---hhhcCCceEEEEEecCcch-hH
Q psy5226 309 ------------DKDRVVRK--SN---GDFTY--------FVSD-----IAYHIF---KWERGFIQAINIQGDDHQG-TI 354 (582)
Q Consensus 309 ------------~~~~vl~k--sD---G~~~Y--------~~~D-----iA~~~~---r~~~~~d~~i~V~g~dh~~-~~ 354 (582)
..|..+.| ++ |.+.. ..-| ++.... ++ ++.| +++.|.||.. |.
T Consensus 189 ~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~-~p~d--i~~~G~D~~~~H~ 265 (497)
T 2csx_A 189 RRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIY-WPAD--LHLVGKDILRFHT 265 (497)
T ss_dssp HHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHH-CSCS--CEEEEGGGHHHHH
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhh-CCce--EEEeecchhHhHH
Confidence 01222222 22 22211 1000 000000 00 1233 6789999875 22
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHH
Q psy5226 355 TRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRF 434 (582)
Q Consensus 355 ~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy 434 (582)
.-..+.+.++ |.+++ ..+.|+||+++ +|+ |||||+||+|++.|+++++ |++++||
T Consensus 266 ~~~~a~l~~~--g~~~~-~~~~~~G~v~~--~G~--KMSKS~GN~i~~~dli~~~------------------g~DalR~ 320 (497)
T 2csx_A 266 VYWPAFLMSL--GYELP-KKVFAHGWWTV--EGK--KMSKTLGNVVDPYEVVQEY------------------GLDEVRY 320 (497)
T ss_dssp THHHHHHHHH--TCCCC-SCEEEECCEES--SSS--BCCTTTTCCCCHHHHHHHH------------------CHHHHHH
T ss_pred HHHHHHHHHc--CCCCC-cEEEECcEEEe--CCc--eeCCcCCCCCCHHHHHHHC------------------CcHHHHH
Confidence 2222445667 98776 47899999976 788 9999999999999999999 9999999
Q ss_pred HHhc-cCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHH
Q psy5226 435 FLIS-RKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVL 513 (582)
Q Consensus 435 ~~l~-~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v 513 (582)
++++ ..+.+|++||++.+.+..+.+..++++|+++|+.++++++..+..+ .+.++.|+..+.++++.+
T Consensus 321 ~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~-----------~~~d~~l~~~l~~~~~~v 389 (497)
T 2csx_A 321 FLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVS-----------GARDEEYAKIAQESIKNY 389 (497)
T ss_dssp HHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBC-----------CCCCTTHHHHHHHHHHHH
T ss_pred HHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----------chhHHHHHHHHHHHHHHH
Confidence 9998 6789999999999988666667789999999999999887532211 123455788899999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHhhhhcccc
Q psy5226 514 VNSVKDLCPHYVAFYLRDLAKELHGYYNTERI 545 (582)
Q Consensus 514 ~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v 545 (582)
.+++++++++.+++++++++..+|.|++.++-
T Consensus 390 ~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 421 (497)
T 2csx_A 390 ENYMEKVNFYKAIEEILKFTSYLNKYVDEKQP 421 (497)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999998753
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.3e-38 Score=347.33 Aligned_cols=331 Identities=19% Similarity=0.226 Sum_probs=240.2
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
+++.|..++|||+|++||||+|+++++|+++|++|..||+|.++..++|+|..+-.
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~------------------------ 58 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYR------------------------ 58 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHH------------------------
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHH------------------------
Confidence 57899999999999999999999999999999999999999999999999864311
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
.++ + +..++ +.+ ++.+.+.|+++|++|||.+|.+.++++..+.+.++++
T Consensus 59 -------~a~---~--------------~g~~~---~~~----~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~ 107 (500)
T 2d5b_A 59 -------AAQ---A--------------AGEDP---KAF----VDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLV 107 (500)
T ss_dssp -------HHH---H--------------HTSCH---HHH----HHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred -------HHH---H--------------cCCCH---HHH----HHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHH
Confidence 111 1 11223 223 3667788999999999999988888864334678999
Q ss_pred HHHHHHcCCeeee--CCcEEEEeccC--------------CC--------------------------------------
Q psy5226 283 TKLLIQSGKTYYK--DGALWLRTTDY--------------GD-------------------------------------- 308 (582)
Q Consensus 283 i~~L~~~g~~~~~--~Ga~~~~~~~~--------------g~-------------------------------------- 308 (582)
+++|.++|++|+. .|.+|+.+..+ |.
T Consensus 108 ~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~ 187 (500)
T 2d5b_A 108 LKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYR 187 (500)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHH
T ss_pred HHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHH
Confidence 9999999999975 45554332211 00
Q ss_pred ----------CcceEEEc--cC---Cccc--------cc--hh------hHHHHHhh-hhcCCceEEEEEecCcchhHHH
Q psy5226 309 ----------DKDRVVRK--SN---GDFT--------YF--VS------DIAYHIFK-WERGFIQAINIQGDDHQGTITR 356 (582)
Q Consensus 309 ----------~~~~vl~k--sD---G~~~--------Y~--~~------DiA~~~~r-~~~~~d~~i~V~g~dh~~~~~~ 356 (582)
..|..+.| ++ |.+. |. .. .++|+..+ +++.+..-|++.|.||+. +..
T Consensus 188 ~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~~~G~D~~~-fh~ 266 (500)
T 2d5b_A 188 NEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK-PHA 266 (500)
T ss_dssp HHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHH-HHH
T ss_pred HHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEEEEeechhh-hHH
Confidence 01223333 22 3211 11 00 11122110 111011248999999986 222
Q ss_pred HH--HHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHH
Q psy5226 357 VK--AGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRF 434 (582)
Q Consensus 357 ~~--~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy 434 (582)
+. +.+.++ |++++ ..++|+||++. ++|+ |||||+||+|++.|+++++ |++++||
T Consensus 267 ~~~~a~~~~~--g~~~~-~~v~~~G~v~~-~~G~--KMSKS~GN~i~p~d~i~~~------------------g~DalR~ 322 (500)
T 2d5b_A 267 VFWPTMLKAA--GIPMY-RHLNVGGFLLG-PDGR--KMSKTLGNVVDPFALLEKY------------------GRDALRY 322 (500)
T ss_dssp THHHHHHHHH--TCCCC-SEEEEECCEEC-TTSS--CCCTTTTCCCCHHHHHHHH------------------CHHHHHH
T ss_pred HHHHHHHHHc--CCCCC-cEEEECceEEe-CCCC--cccccCCCCCCHHHHHHhc------------------CcHHHHH
Confidence 22 444567 98776 47899999954 4787 9999999999999999999 9999999
Q ss_pred HHhc-cCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHH
Q psy5226 435 FLIS-RKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVL 513 (582)
Q Consensus 435 ~~l~-~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v 513 (582)
++++ ..+.+|++||++.+.+..+....+.+.++++|+.+++++...+..+ . +.++.|+..+.++++.+
T Consensus 323 ~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~---~--------~~~~~l~~~l~~~~~~v 391 (500)
T 2d5b_A 323 YLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIP---E--------PVAGEELAEGTGLAGRL 391 (500)
T ss_dssp HHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCC---C--------CCCCGGGGGGGGHHHHH
T ss_pred HHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---c--------hhHHHHHHHHHHHHHHH
Confidence 9998 6889999999999987554333345677789999998876543221 1 01245677788999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHhhhhccc
Q psy5226 514 VNSVKDLCPHYVAFYLRDLAKELHGYYNTER 544 (582)
Q Consensus 514 ~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~ 544 (582)
.+++++++++.+++++++++..+|.|++.++
T Consensus 392 ~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 392 RPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999875
No 12
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=8.5e-34 Score=302.69 Aligned_cols=334 Identities=19% Similarity=0.215 Sum_probs=237.4
Q ss_pred CCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy5226 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDT 200 (582)
Q Consensus 121 ~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (582)
.+++|.+++|+|||++++||||+|++|++|+|+|+++..||+|..+.+++|+|..+-.-
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~--------------------- 80 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKR--------------------- 80 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHH---------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHH---------------------
Confidence 45789999999999999999999999999999999999999999999999999643110
Q ss_pred CCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccc-cccccccCCCh
Q psy5226 201 AYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYC-LESSLYKTGKV 279 (582)
Q Consensus 201 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~-~ES~~~~~~~i 279 (582)
| . +.+.+ |+.++ +++.+.|.++|++|||.+|.+. ++|+ | .+.+
T Consensus 81 ----------A---~---------------~~g~~--~~e~a----~~~~~~f~~d~~~LgI~~d~~~praTe-~-i~~i 124 (462)
T 3tqo_A 81 ----------A---G---------------ENKES--PAALA----ERFIQILHEDEKALRVLSPDQEPRATQ-Y-VPEI 124 (462)
T ss_dssp ----------H---H---------------HTTSC--HHHHH----HHHHHHHHHHHHHHTCCCCSBCCBGGG-C-HHHH
T ss_pred ----------H---H---------------HcCCC--HHHHH----HHHHHHHHHHHHHcCCCCCccccChhh-H-HHHH
Confidence 1 1 11221 33333 6778889999999999997554 7774 3 3678
Q ss_pred HHHHHHHHHcCCeeee-CCcEEEEeccC---CC-----------------------CcceEEEcc--CCccccchhh---
Q psy5226 280 SLVTKLLIQSGKTYYK-DGALWLRTTDY---GD-----------------------DKDRVVRKS--NGDFTYFVSD--- 327 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~-~Ga~~~~~~~~---g~-----------------------~~~~vl~ks--DG~~~Y~~~D--- 327 (582)
.+++++|.++|++|+. +|.+||++..+ |. ..|.+|.|. .|.+.+.++-
T Consensus 125 ~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~G 204 (462)
T 3tqo_A 125 IKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEG 204 (462)
T ss_dssp HHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSE
T ss_pred HHHHHHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCC
Confidence 9999999999999998 79999987654 21 013455553 4666555431
Q ss_pred -HHHHHhhhhc-----CCceEEEEEecCcch-hH-HHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCc
Q psy5226 328 -IAYHIFKWER-----GFIQAINIQGDDHQG-TI-TRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY 399 (582)
Q Consensus 328 -iA~~~~r~~~-----~~d~~i~V~g~dh~~-~~-~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~ 399 (582)
.+||+..... |...-|.+.|.|+.. |. ..+.++..+. |.++. ..|+|.+++.+ +|+ |||||+||+
T Consensus 205 rPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~--g~p~~-~~w~H~g~v~~--~G~--KMSKSlGN~ 277 (462)
T 3tqo_A 205 RPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGE--EKPFV-KLWMHAGLLEI--NKE--KMSKSLGNI 277 (462)
T ss_dssp EECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHH--SSCCE-EEEEEECCEEE--TTE--ECCTTTTCC
T ss_pred CCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHc--CCCcc-eEEEEccEEec--CCc--CccccCCCc
Confidence 2355554211 222234445667542 32 2334444556 77554 47899999876 898 999999999
Q ss_pred ccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcC
Q psy5226 400 ITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWG 479 (582)
Q Consensus 400 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~ 479 (582)
|++.|+++++ |++++||++|+.+++++++|+++.+.+.. -.+.|+...++...
T Consensus 278 i~~~dll~~~------------------g~dalR~~lls~~yr~~l~fs~~~l~~a~---------~~l~rl~~~~~~~~ 330 (462)
T 3tqo_A 278 ISIREALKES------------------DVEVLRYFLLSGHYRNPLSYSKENLENGR---------LALERFYLALRGLP 330 (462)
T ss_dssp CBHHHHHHHS------------------CHHHHHHHHHHSCTTSCEEECHHHHHHHH---------HHHHHHHHHHTTCC
T ss_pred ccHHHHHhhc------------------ChHHhhhhhccCCCCCCcCcCHHHHHHHH---------HHHHHHHHHHHHhh
Confidence 9999999998 99999999999999999999999987622 23456666665431
Q ss_pred CCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHH
Q psy5226 480 GDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLA 558 (582)
Q Consensus 480 ~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~ 558 (582)
.. .+. .+..+.+.+.+|++ +++...++..|+++++..|+..+... . .
T Consensus 331 ~~--------------~~~------~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~-----~-------~ 378 (462)
T 3tqo_A 331 VV--------------NHE------KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ-----I-------E 378 (462)
T ss_dssp C--------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC-----H-------H
T ss_pred hc--------------cch------hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc-----H-------H
Confidence 10 000 12345667777877 68999999999999999998754321 1 1
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q psy5226 559 LIYSIGQVLNNGLKLIGIS 577 (582)
Q Consensus 559 L~~a~~~vL~~~L~lLGi~ 577 (582)
........|...+.+|||.
T Consensus 379 ~~~~~~~~~~~~~~vlg~~ 397 (462)
T 3tqo_A 379 KAAVLAAELKCLGNIFGLL 397 (462)
T ss_dssp HHHHHHHHHHHHHGGGTCS
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 1123345577778899984
No 13
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.2e-34 Score=309.07 Aligned_cols=302 Identities=16% Similarity=0.161 Sum_probs=205.4
Q ss_pred CcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 122 ~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
+.++.++.|+|||+|++||||+|++|+||+|+|++|..||+|..+++++|+|..+-.
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~----------------------- 93 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFE----------------------- 93 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHH-----------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHH-----------------------
Confidence 567899999999999999999999999999999999999999999999999964311
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-ccccccccccccCCChH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVK-FDNYCLESSLYKTGKVS 280 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~-fD~~~~ES~~~~~~~i~ 280 (582)
.|+ +.|.+ |+.+ ++++.+.|+++|++|||. +|.|.++|+ |. +.++
T Consensus 94 --------~A~------------------~~g~~--~~~~----~~~~~~~~~~~~~~Lgi~~~d~~~r~t~-~~-~~~~ 139 (414)
T 3c8z_A 94 --------RAE------------------RDGID--WRTL----GDRETQLFREDMAALRVLPPHDYVAATD-AI-AEVV 139 (414)
T ss_dssp --------HHH------------------HHTCC--HHHH----HHHHHHHHHHHHHHTTCCCCSEEEEGGG-CH-HHHH
T ss_pred --------HHH------------------HcCCC--HHHH----HHHHHHHHHHHHHHcCCCCCcceecccc-hH-HHHH
Confidence 111 11221 2333 377788999999999999 999999997 43 5789
Q ss_pred HHHHHHHHcCCeeeeC----CcEEEEeccCCC-------CcceEEEc--c-CCcc-ccc---hhhHHHHHhhhhc-----
Q psy5226 281 LVTKLLIQSGKTYYKD----GALWLRTTDYGD-------DKDRVVRK--S-NGDF-TYF---VSDIAYHIFKWER----- 337 (582)
Q Consensus 281 ~~i~~L~~~g~~~~~~----Ga~~~~~~~~g~-------~~~~vl~k--s-DG~~-~Y~---~~DiA~~~~r~~~----- 337 (582)
++++.|.++|++|+.+ |++||++++|.+ ..+.++.. + +|.. .|. .+|.+ +||...
T Consensus 140 ~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~--lWk~~~pg~~~ 217 (414)
T 3c8z_A 140 EMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDAL--LWRAERPGEPS 217 (414)
T ss_dssp HHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEE--EEEECCTTSCC
T ss_pred HHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhh--hcCCCCCCCCC
Confidence 9999999999999988 999999988643 11112211 1 1222 232 23322 233210
Q ss_pred -----C-----------------CceEE--EEEecCcch-hHHHH-HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeee
Q psy5226 338 -----G-----------------FIQAI--NIQGDDHQG-TITRV-KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVK 391 (582)
Q Consensus 338 -----~-----------------~d~~i--~V~g~dh~~-~~~~~-~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~K 391 (582)
+ .+..+ ++.|.||.. |..-. .++..+. |.++....++|.||+++ +|+ |
T Consensus 218 Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~--g~~~~~~~~~h~g~v~~--~G~--K 291 (414)
T 3c8z_A 218 WPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVT--GERRFARHYVHTGMIGW--DGH--K 291 (414)
T ss_dssp BCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHH--CCSCSEEEEEEECCBC---------
T ss_pred CCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhc--CCCCcCeEEEEcCEEec--CCe--E
Confidence 0 11134 455999553 32222 2222335 77443235677799977 787 9
Q ss_pred cccCCCCcccHHHHHHH-HHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHH
Q psy5226 392 ISKRSGSYITIRNLIKW-LSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHAR 470 (582)
Q Consensus 392 MSkr~G~~v~l~dll~~-~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR 470 (582)
||||+||+|++.|++++ + |++++||++++.++.+|++|+++.+.+..+ .+.|
T Consensus 292 MSKS~GN~v~~~~ll~~g~------------------g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~---------~l~~ 344 (414)
T 3c8z_A 292 MSKSRGNLVLVSQLRAQGV------------------DPSAIRLGLFSGHYREDRFWSNEVLDEANA---------RLAR 344 (414)
T ss_dssp --------CBHHHHHHTTC------------------CHHHHHHHHHTSCTTSCBCCCHHHHHHHHH---------HHHH
T ss_pred cccccCCcCCHHHHhhccC------------------CcchheeEEEecCcCCCCCcCHHHHHHHHH---------HHHH
Confidence 99999999999999999 8 999999999998889999999999877332 1356
Q ss_pred HHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHH-HhhchHHHHHHHHHHHHHHHh
Q psy5226 471 IFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSV-KDLCPHYVAFYLRDLAKELHG 538 (582)
Q Consensus 471 ~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~-~~~~p~~l~~yl~~La~~~n~ 538 (582)
+.+.+++.. . + . +..+.+.+.+++ ++++.+.++..++++++..|+
T Consensus 345 l~n~~~~~~--~-~--------~------------~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 345 WRSATALPE--A-P--------D------------ATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HHHHHTSSC--B-S--------C------------CHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--c-h--------h------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 666654321 0 0 0 123456778888 689999999999999999998
No 14
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=5e-33 Score=315.39 Aligned_cols=337 Identities=18% Similarity=0.156 Sum_probs=245.9
Q ss_pred cEEEEEEecCCCCCCCccchhhh-hHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQ-CAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA 201 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs-~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
+++.|....|||+|++||||+|+ ++++|+++|++|..||+|..+..++++|..+-.-+.
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~-------------------- 61 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL-------------------- 61 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH--------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHH--------------------
Confidence 57899999999999999999998 999999999999999999999999999986522110
Q ss_pred CCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHH
Q psy5226 202 YNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSL 281 (582)
Q Consensus 202 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~ 281 (582)
+ +.-+|. .+ ++++.+.|++++++|||+||.+.++++..+...+++
T Consensus 62 --------------k--------------~G~~p~---e~----~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~ 106 (722)
T 1rqg_A 62 --------------K--------------EGRSPR---EI----VDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQE 106 (722)
T ss_dssp --------------H--------------HTCCHH---HH----HHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHH
T ss_pred --------------H--------------cCCCHH---HH----HHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHH
Confidence 0 122332 22 377788899999999999998887776444567899
Q ss_pred HHHHHHHcCCeeeeCCcEEEEecc---------------------CCC--------------------------------
Q psy5226 282 VTKLLIQSGKTYYKDGALWLRTTD---------------------YGD-------------------------------- 308 (582)
Q Consensus 282 ~i~~L~~~g~~~~~~Ga~~~~~~~---------------------~g~-------------------------------- 308 (582)
++.+|.++|++|+....+++.... +|+
T Consensus 107 ~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~ 186 (722)
T 1rqg_A 107 FFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSA 186 (722)
T ss_dssp HHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEE
T ss_pred HHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEec
Confidence 999999999999855443332110 010
Q ss_pred -------------------------------------CcceEEEc--------------cCCccccchhh--HHHHH---
Q psy5226 309 -------------------------------------DKDRVVRK--------------SNGDFTYFVSD--IAYHI--- 332 (582)
Q Consensus 309 -------------------------------------~~~~vl~k--------------sDG~~~Y~~~D--iA~~~--- 332 (582)
..|..|.| .+|...|..-| ++|..
T Consensus 187 qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~ 266 (722)
T 1rqg_A 187 HYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITI 266 (722)
T ss_dssp EEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHH
T ss_pred cEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHH
Confidence 01111222 23344565555 33321
Q ss_pred -hh--------hh--cCC-c---eEEEEEecCcchhHHH-HHHHHHHHHcC----------CCCCCCcEEEEEEEEEeeC
Q psy5226 333 -FK--------WE--RGF-I---QAINIQGDDHQGTITR-VKAGLQAINIG----------IPNDYPNYILHKMVTVIKN 386 (582)
Q Consensus 333 -~r--------~~--~~~-d---~~i~V~g~dh~~~~~~-~~~~l~~l~~G----------~~~~~~~~~~~~~v~l~~~ 386 (582)
|. ++ |+. + ..+++.|.|+..+... ..+.+.+. | ++.| ..++++||+++ +
T Consensus 267 ~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~--~~~l~~d~~rg~~~P-k~v~~hG~v~~--~ 341 (722)
T 1rqg_A 267 EHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAY--GKYKDEEVEAEWNLP-YDIPANEYLTL--E 341 (722)
T ss_dssp HHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTT--CCBCSSSCCBCBCCC-SBCCEECCEEE--T
T ss_pred HHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhcc--CCCcccccccCCCCC-CEEEEeeeEEe--C
Confidence 11 11 110 2 4478889987532111 12334444 5 5566 48899999977 7
Q ss_pred CeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHHHhhhcCCCchHHHH
Q psy5226 387 GKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDLALKRSDENPVYYIQ 465 (582)
Q Consensus 387 G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~~~~~~~n~~~ylq 465 (582)
|+ |||||+||+|++.|+++++ |.|++|||+++. ...+|++|+|+.+.+..|.+...-+.
T Consensus 342 G~--KMSKS~GNvV~p~d~i~~y------------------gaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~ 401 (722)
T 1rqg_A 342 GK--KFSTSRNWAIWVHEFLDVF------------------PADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLG 401 (722)
T ss_dssp TE--ECBTTTTBSCBHHHHTTTS------------------CHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHH
T ss_pred Ce--eeeeeCCCcCCHHHHHHhc------------------CchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 88 9999999999999999998 999999999997 67999999999998766544434455
Q ss_pred HHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccc
Q psy5226 466 YAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERI 545 (582)
Q Consensus 466 Ya~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~v 545 (582)
+..+|+.+++.++..+.++ . ...+ .+.++.|+..+.++.+.+.+++++++++.+++.++++++..|.|++.++-
T Consensus 402 N~~~R~~~~~~k~~~~~~~---~--~~~~-~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~kp 475 (722)
T 1rqg_A 402 NFVHRALTFVNRYFDGVVP---E--RGEL-DELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQP 475 (722)
T ss_dssp HHHHHHHHHHHHHSTTBCC---C--CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCCCCC---C--cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5568999999887554332 1 1123 46677899999999999999999999999999999999999999988753
No 15
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.1e-31 Score=287.61 Aligned_cols=330 Identities=16% Similarity=0.182 Sum_probs=208.1
Q ss_pred EEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy5226 124 KILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYN 203 (582)
Q Consensus 124 ~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 203 (582)
+|-++.|+|+|++++||||+|++|++|+|+|+++..||+|..+.+++|+|+|.|.- -.+
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~---------------------Deh 100 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL---------------------DDG 100 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC---------------------CCC
Confidence 78899999999999999999999999999999999999999999999999986620 023
Q ss_pred cccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHH
Q psy5226 204 GEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVT 283 (582)
Q Consensus 204 g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i 283 (582)
|++|...|++ +.-++ +++. +.+.+.|++++++|||.+|.+.+..+-| .+.+.+++
T Consensus 101 ddKI~~~A~~-----------------~g~~~---~e~a----~~~~~~f~~d~~~Lgi~~d~~~~~~t~h-i~~v~~~i 155 (501)
T 3sp1_A 101 EDKVAKTARE-----------------KGLTV---YEIS----EFFTEAFFNDCRKLNIVYPDKVLVASKH-IPIMIEVV 155 (501)
T ss_dssp -----------------------------CCH---HHHH----HHHHHHHHHHHHHTTCCCCSEEEEGGGC-HHHHHHHH
T ss_pred CcHHHHHHHH-----------------cCCCH---HHHH----HHHHHHHHHHHHHcCCCCCCcccCcchH-HHHHHHHH
Confidence 4555322210 11222 2333 7778889999999999998765444333 46789999
Q ss_pred HHHHHcCCeeeeCCcEEEEeccC---CCC------------------------cceEEEcc-----CCccccchhh----
Q psy5226 284 KLLIQSGKTYYKDGALWLRTTDY---GDD------------------------KDRVVRKS-----NGDFTYFVSD---- 327 (582)
Q Consensus 284 ~~L~~~g~~~~~~Ga~~~~~~~~---g~~------------------------~~~vl~ks-----DG~~~Y~~~D---- 327 (582)
+.|.++|++|+.+|.+||+.++| |.. .|.+++|. .|.+.+.++-
T Consensus 156 ~~L~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~Gr 235 (501)
T 3sp1_A 156 KILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGY 235 (501)
T ss_dssp HHHHHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEE
T ss_pred HHHHHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCC
Confidence 99999999999999999987653 210 13355554 2444443320
Q ss_pred HHHHHhhhh-----cCCceEEEEEecCcch-h-HHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcc
Q psy5226 328 IAYHIFKWE-----RGFIQAINIQGDDHQG-T-ITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYI 400 (582)
Q Consensus 328 iA~~~~r~~-----~~~d~~i~V~g~dh~~-~-~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v 400 (582)
.+||+.+.. .+...-|++.|.|+.. | .-...++..+. |.++. ..|+|.||+++ +|+ |||||+||+|
T Consensus 236 PGWhiEcsam~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~--g~~~~-~~w~H~g~v~~--~G~--KMSKSlGN~i 308 (501)
T 3sp1_A 236 PSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFL--NKKWC-DVFVHGEFLIM--DYN--KMSKSRGNFI 308 (501)
T ss_dssp ECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHH--TSCCC-SEEEEECCEEC--C------------CC
T ss_pred CCchHHHHHHHHHHcCCCceEEeeccccccchHHHHHHHHHHcc--CCCCC-eEEEEeeeEee--CCe--EccccCCCcC
Confidence 124443311 1222346788898552 2 22233333444 65544 48899999976 788 9999999999
Q ss_pred cHHHHHHH-HHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcC
Q psy5226 401 TIRNLIKW-LSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWG 479 (582)
Q Consensus 401 ~l~dll~~-~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~ 479 (582)
++.|++++ + +++++||++|+.+++++++|+++.+.+..+ .+-+.+.|+...+++..
T Consensus 309 t~~dll~~gy------------------g~d~lR~~lls~~yr~~l~fs~~~l~~a~~-----~~~~ll~rl~~~~~~~~ 365 (501)
T 3sp1_A 309 TVKDLEDQNF------------------SPLDFRYLCLTSHYRNQLKFSLDNLQASKI-----ARENLINKLSYFYESLD 365 (501)
T ss_dssp CHHHHHHTTC------------------CHHHHHHHHHTSCTTSCEECCHHHHHHHHH-----HHHHHHHHHHHHHHTCC
T ss_pred CHHHHHhcCC------------------CHHHHHHHHHhccCCCCCccCHHHHHHHHH-----hhHHHHHHHHHHHHHHH
Confidence 99999998 8 999999999999999999999999876332 22222456666665431
Q ss_pred CCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHH
Q psy5226 480 GDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELH 537 (582)
Q Consensus 480 ~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n 537 (582)
............ .+. ...+..+.+.+.+|++ +++...++..|+++++..|
T Consensus 366 ~~~~~~~~~~~~----~~~----~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 366 PVDLNTLNKDLK----NFG----FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp HHHHHHHHSCTT----SCS----SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred hhhccccccccc----chh----hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 100000000000 000 0123345667778887 6899999999999998874
No 16
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.98 E-value=1.5e-30 Score=288.00 Aligned_cols=338 Identities=17% Similarity=0.134 Sum_probs=233.5
Q ss_pred CCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCC
Q psy5226 120 GSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPD 199 (582)
Q Consensus 120 ~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~ 199 (582)
.+.|+..|.-.-|+++|.+||||+|+.++.|+++|++|..||+|..+..+||+|+.+-.-
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~-------------------- 65 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEA-------------------- 65 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHH--------------------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHH--------------------
Confidence 456788998888999999999999999999999999999999999999999999754211
Q ss_pred CCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCCh
Q psy5226 200 TAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKV 279 (582)
Q Consensus 200 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i 279 (582)
| .+ +.-+|. ++ ++++.+.|++++++|||++|.+.+.++..+...+
T Consensus 66 -----------a---~k--------------~g~~~~---e~----~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v 110 (542)
T 3u1f_A 66 -----------A---KQ--------------KQVSPY---DF----TTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVV 110 (542)
T ss_dssp -----------H---HH--------------TTSCHH---HH----HHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHH
T ss_pred -----------H---HH--------------cCCCHH---HH----HHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHH
Confidence 1 11 223342 22 2677788999999999999987765544445678
Q ss_pred HHHHHHHHHcCCeeeeCCcEEEEe---------------ccCCCC-------cceEEEcc--------------------
Q psy5226 280 SLVTKLLIQSGKTYYKDGALWLRT---------------TDYGDD-------KDRVVRKS-------------------- 317 (582)
Q Consensus 280 ~~~i~~L~~~g~~~~~~Ga~~~~~---------------~~~g~~-------~~~vl~ks-------------------- 317 (582)
++++.+|.++|++|+..+.+++.. .++|+. +..+..++
T Consensus 111 ~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~ 190 (542)
T 3u1f_A 111 KELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYH 190 (542)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHh
Confidence 999999999999998654433211 111110 00010000
Q ss_pred ------------------------------------C-Ccc--------ccchhhH--HHH---Hhhhhc----------
Q psy5226 318 ------------------------------------N-GDF--------TYFVSDI--AYH---IFKWER---------- 337 (582)
Q Consensus 318 ------------------------------------D-G~~--------~Y~~~Di--A~~---~~r~~~---------- 337 (582)
+ |.+ .|..-|- +|. .+..+.
T Consensus 191 ~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~ 270 (542)
T 3u1f_A 191 ANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDD 270 (542)
T ss_dssp HCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSS
T ss_pred hcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccch
Confidence 0 010 1111110 000 000000
Q ss_pred -----CCceEEEEEecCcchh-HHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh
Q psy5226 338 -----GFIQAINIQGDDHQGT-ITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK 411 (582)
Q Consensus 338 -----~~d~~i~V~g~dh~~~-~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~ 411 (582)
.+-..+++.|.|+..+ ..-..+.+.+. |.++++ .+.++||+.. +|+ |||||+||+|++.|+++++
T Consensus 271 ~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~-~v~~hg~l~~--~G~--KMSKSlGNvi~p~~~i~~y-- 341 (542)
T 3u1f_A 271 FNELERFPADVHVIGKDILKFHAIYWPAFLLSA--GLPLPK-KIVAHGWWTK--DRK--KISKSLGNVFDPVEKAEEF-- 341 (542)
T ss_dssp GGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHH--TCCCCS-CEEEECCCEE--TTB--CCBTTTTBCCCHHHHHHHH--
T ss_pred hhhhcCCcceEEEecccccccccchhHHHHHhh--cccccc-eeccccceec--CCc--eeccccCCCCChhHHHhhc--
Confidence 0011367788886532 11122334556 888774 8888999765 788 9999999999999999999
Q ss_pred hhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCccccccc
Q psy5226 412 TESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKD 490 (582)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d 490 (582)
|.|++||++++. ...+|++|+++.+.+..+....+-+.+...|+.+...+.. +..+ +
T Consensus 342 ----------------gaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~-~~~~-----~ 399 (542)
T 3u1f_A 342 ----------------GYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVN-GEWP-----S 399 (542)
T ss_dssp ----------------CHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT-SBCC-----C
T ss_pred ----------------CchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhccc-CCCC-----c
Confidence 999999999985 5689999999999876654444445556678776544332 1221 1
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhccc
Q psy5226 491 LSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTER 544 (582)
Q Consensus 491 ~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~ 544 (582)
...+ .+.++.++..+.+..+.+.+++++++.+.+++.++++++..|.|++..+
T Consensus 400 ~~~~-~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~ 452 (542)
T 3u1f_A 400 PAAY-TEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMA 452 (542)
T ss_dssp CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchh-hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1123 4667779999999999999999999999999999999999999998764
No 17
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.94 E-value=3e-27 Score=259.49 Aligned_cols=277 Identities=17% Similarity=0.244 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch--hHH
Q psy5226 99 IKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG--VQI 176 (582)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G--~q~ 176 (582)
|....+.++++.+.. ++.+++ -|+|||+|++||||+|+++++|+++|+|++.||+|..+.+++|+| .++
T Consensus 4 W~~~~a~~~~~~~~~--------~~~yv~-~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rki 74 (523)
T 1irx_A 4 WADYIADKIIRERGE--------KEKYVV-ESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV 74 (523)
T ss_dssp HHHHHHHHHHHHSCC--------CSEEEE-EEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCC
T ss_pred hHHHHHHHHHHhcCC--------CCeEEE-CCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhh
Confidence 444556777765321 233332 347999999999999999999999999999999999999999999 322
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5226 177 TNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDID 256 (582)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
|..+.-....+.|.+. .+.+||. ..+.++ ++++.+.|.++
T Consensus 75 ---------------p~~~~~a~~~~~G~~~----------------------~~~p~p~--~~~~~~-~~~~~~~~~~~ 114 (523)
T 1irx_A 75 ---------------PRNVPQEWKDYLGMPI----------------------SEVPDPW--GCHESY-AEHFMRKFEEE 114 (523)
T ss_dssp ---------------CSSSCGGGGGGTTSBG----------------------GGSCCTT--SSSSSH-HHHHHHHHHHH
T ss_pred ---------------hhHHHHHHHHHcCCCc----------------------ccCCcch--hhHHHH-HHHHHHHHHHH
Confidence 0000000000112111 0223331 111222 37788999999
Q ss_pred HhhhCCcccccccccccccCCChHHHHHHHHHcC----------------CeeeeCCcEEEEeccCCCCcceEE----Ec
Q psy5226 257 LKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSG----------------KTYYKDGALWLRTTDYGDDKDRVV----RK 316 (582)
Q Consensus 257 ~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g----------------~~~~~~Ga~~~~~~~~g~~~~~vl----~k 316 (582)
|++|||.+|.| ++|+.|..+.+.++++.|.++| .+|..+ |++...++.....++ ..
T Consensus 115 l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~ 190 (523)
T 1irx_A 115 VEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN---WWPAMVYCPEHRREAEIIEWD 190 (523)
T ss_dssp HHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTT---CCSEEEECTTTCCEECEEEEC
T ss_pred HHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCC---ceeccccchhhCCcccccccC
Confidence 99999999998 8897665558999999999999 566442 444333322211111 11
Q ss_pred ---------cCCccccchhh-----HHHHHhh-hh-cCCceEEEEEecCcch------hHHHHHHHHHHHHcCCCCCCCc
Q psy5226 317 ---------SNGDFTYFVSD-----IAYHIFK-WE-RGFIQAINIQGDDHQG------TITRVKAGLQAINIGIPNDYPN 374 (582)
Q Consensus 317 ---------sDG~~~Y~~~D-----iA~~~~r-~~-~~~d~~i~V~g~dh~~------~~~~~~~~l~~l~~G~~~~~~~ 374 (582)
.+|.+.+...- +.++.+. +. ..++..|+++|.||.. |..++.+ +++ |++++ .
T Consensus 191 ~~~~~~f~~~~g~~~~~d~~~G~g~~~w~~d~~~~~~~l~~~vd~~G~Dh~~~h~s~~~~~~i~~--~al--G~~~p--~ 264 (523)
T 1irx_A 191 GGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIK--EVY--GKEAP--L 264 (523)
T ss_dssp SSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHH--HHH--CCCCC--B
T ss_pred CCCceeeeecCCCccccCCcCCCCCCCCCcchHhhHHHcCCCCcCCCcCccCCCcchhhHHHHHH--HHh--CCCCC--e
Confidence 12322211000 0011110 00 0133456688999886 4544442 678 98665 6
Q ss_pred EEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHH-HHh
Q psy5226 375 YILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDID-LAL 453 (582)
Q Consensus 375 ~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~-~~~ 453 (582)
+.|++|++...+|+ |||||+||++++.|+++++ +++++|||+++..+.++..|+++ .+.
T Consensus 265 ~~h~~~i~~~g~g~--KmSKs~Gn~i~~~~~~~~~------------------~pdalR~~l~~~~~~~~~~fs~~~~l~ 324 (523)
T 1irx_A 265 SLMYEFVGIKGQKG--KMSGSKGNVILLSDLYEVL------------------EPGLVRFIYARHRPNKEIKIDLGLGIL 324 (523)
T ss_dssp CCEECCEEESCC-----------CCCCHHHHHTTS------------------CHHHHHHHHHSSCTTSCEEECCSTTHH
T ss_pred EEEEEEEEeCCCCC--CCCCcCCCCCCHHHHHHHc------------------CHHHHHHHHHhcCCCCCceeCcchhHH
Confidence 89999997621366 9999999999999999988 99999999999999999999998 554
Q ss_pred h
Q psy5226 454 K 454 (582)
Q Consensus 454 ~ 454 (582)
+
T Consensus 325 ~ 325 (523)
T 1irx_A 325 N 325 (523)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.94 E-value=4e-24 Score=246.57 Aligned_cols=135 Identities=17% Similarity=0.265 Sum_probs=109.3
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHh-ccCCCCcccccHHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLI-SRKSDTDFIFDIDL 451 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l-~~~~~~~~~F~~~~ 451 (582)
..++|+||++. +|+ |||||+||+|++.|+++++ |.|++||+++ +..+.+|++|+++.
T Consensus 636 k~v~~~G~v~~--~G~--KMSKS~GNvv~p~dli~~y------------------GaDalR~~ll~~~~~~~d~~fs~~~ 693 (810)
T 1wkb_A 636 KGIAVNGFGTL--EGQ--KMSKSKGNVLNFIDAIEEN------------------GADVVRLYIMSLAEHDSDFDWRRKE 693 (810)
T ss_dssp CEEEEECCEEE--TTB--CCCTTTTCCCBHHHHHHHH------------------CHHHHHHHHHHHCCTTCCEEECHHH
T ss_pred cEEEEEeEEEe--CCe--ehhhcCCCcCCHHHHHHHc------------------ChHHHHHHHHhcCCCCCCcccCHHH
Confidence 38899999976 788 9999999999999999999 9999999998 56789999999998
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHH-H
Q psy5226 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYL-R 530 (582)
Q Consensus 452 ~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl-~ 530 (582)
+.+. +. .++|+.+++++......+ . ...+ .+.++.|+..+.++.+.+.+++++++++.++..+ +
T Consensus 694 ~~~~-----~~----~l~rl~n~~~~~~~~~~~---~--~~~~-~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 694 VGKL-----RK----QIERFYELISQFAEYEVK---G--NVEL-KDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFY 758 (810)
T ss_dssp HHHH-----HH----HHHHHHHHHHHHHTCCCC---S--CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred HHHH-----HH----HHHHHHHHHHHHHhccCc---c--cccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7551 22 347888888776432211 1 1112 4667789999999999999999999999999865 6
Q ss_pred HHHHHHHhhhhccc
Q psy5226 531 DLAKELHGYYNTER 544 (582)
Q Consensus 531 ~La~~~n~fy~~~~ 544 (582)
.++..+|.|++.++
T Consensus 759 ~l~~~~n~yi~~~k 772 (810)
T 1wkb_A 759 SIMNDLRWYLRRTE 772 (810)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 19
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.91 E-value=3e-23 Score=239.17 Aligned_cols=202 Identities=18% Similarity=0.202 Sum_probs=131.5
Q ss_pred EEEEecCcc-hhHHHHHHHHH-HHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRVKAGLQ-AINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~~~~l~-~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+|+.|.||+ +|+..+..... .. |.++. ..+..+||+. ..+|+ |||||+||+|++.|+++++
T Consensus 547 l~~~G~D~~r~w~~~~~~~~~~~~--~~~pf-~~v~~hg~vl-~~~G~--KMSKS~GNvV~p~dli~~y----------- 609 (821)
T 1ile_A 547 FIAEGIDQTRGWFNSLHQLGVMLF--GSIAF-KNVICHGLIL-DEKGQ--KMSKSKGNVVDPWDIIRKF----------- 609 (821)
T ss_dssp BEEEEGGGGGTHHHHHHHHHHHHH--SSCSB-SEEEEECCEE-CTTSS--CCCTTTTCCCCHHHHHTTT-----------
T ss_pred cccchhhhhccHHHHHHHHHHHhc--CCCCc-ceEEEEeeEE-CCCCC--CCCccCCCCCCHHHHHHHh-----------
Confidence 678888887 56665544333 34 66554 4777888884 35787 9999999999999999998
Q ss_pred hHhhhhcchhhHHHHHhccC-CCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHH
Q psy5226 421 FREDLIRGRDLMRFFLISRK-SDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKE 499 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~-~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e 499 (582)
|.|++||++++.. +.+|++||++.+.+..+ +...-+.+++.|+.......+..... ......+ .+.+
T Consensus 610 -------GaDalR~~ll~~~~~~~d~~fs~~~l~~~~~-~~~~kl~N~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~d 677 (821)
T 1ile_A 610 -------GADALRWYIYVSAPPEADRRFGPNLVRETVR-DYFLTLWNVYSFFVTYANLDRPDLKN---PPPPEKR-PEMD 677 (821)
T ss_dssp -------CHHHHHHHHHHHSCSSSCEECCHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHCCCTTS---CCCSTTS-CHHH
T ss_pred -------CHHHHHHHHHhCCCCCCCcEecHHHHHHHHH-HHHHHHHHHHHHHHHhhccccCCccc---ccccccC-CHHH
Confidence 9999999999975 79999999999876322 22333444444443221111100000 0001122 4667
Q ss_pred HHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHH-HHH-Hhhhhccc--ccCCChhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy5226 500 LSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLA-KEL-HGYYNTER--ILVKNITIKMARLALIYSIGQVLNNGLKLIG 575 (582)
Q Consensus 500 ~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La-~~~-n~fy~~~~--vl~~~~~~~~~RL~L~~a~~~vL~~~L~lLG 575 (582)
+.++..+.++.+.+.+++++++++.+++.+++++ ..+ |.|.+.++ ...... ...|+........+|+..+.||.
T Consensus 678 ~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~--~~~r~~~~~~l~~~l~~~~~lLa 755 (821)
T 1ile_A 678 RWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED--ALDREAAYATLYEALVLVATLAA 755 (821)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT--TSSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC--cHHHHHHHHHHHHHHHHHHHHcC
Confidence 7889999999999999999999999999999999 444 44444432 111111 01122334445566666667664
No 20
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.91 E-value=8.2e-22 Score=226.37 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=110.5
Q ss_pred EEEecCcc-hhHHHHHH-HHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhh
Q psy5226 344 NIQGDDHQ-GTITRVKA-GLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEF 421 (582)
Q Consensus 344 ~V~g~dh~-~~~~~~~~-~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~ 421 (582)
++.|.|++ .|+.++.. ++... |..|. ..+..+|++. ..+|+ |||||+||+|++.|+++++
T Consensus 485 ~v~G~Dii~~W~a~~~~~~~~~~--g~~Pf-k~v~~hG~vl-d~~G~--KMSKSlGNvIdP~dli~~y------------ 546 (862)
T 1gax_A 485 LVTGYDILFLWVSRMEVSGYHFM--GERPF-KTVLLHGLVL-DEKGQ--KMSKSKGNVIDPLEMVERY------------ 546 (862)
T ss_dssp EEEEGGGTTTTHHHHHHHHHHHS--SSCSB-SEEEEECCEE-CTTSC--BCCTTTTCCCCHHHHHHHH------------
T ss_pred EecCccccccHHHHHHHHHHHhc--CCCcc-cEEEEeeeEE-cCCCC--CccccCCCCCCHHHHHHHc------------
Confidence 34444533 34444332 33445 66443 3777888884 45788 9999999999999999999
Q ss_pred HhhhhcchhhHHHHHhcc-CCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHH---hcCCCCCcccccccCCCCCCH
Q psy5226 422 REDLIRGRDLMRFFLISR-KSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLN---QWGGDKKSLISIKDLSSLNTE 497 (582)
Q Consensus 422 ~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silr---k~~~~~~~~~~~~d~~~l~~~ 497 (582)
|.|++||++++. .+.+|++||++.+.... | ++ .|+.+..| ....+..+ . . ..+ .+
T Consensus 547 ------GaDalR~~ll~~~~~~~D~~fs~~~l~~~~--~---f~----nkl~N~~rf~~~~~~~~~~-~-~---~~~-~~ 605 (862)
T 1gax_A 547 ------GADALRFALIYLATGGQDIRLDLRWLEMAR--N---FA----NKLYNAARFVLLSREGFQA-K-E---DTP-TL 605 (862)
T ss_dssp ------CHHHHHHHHHHHCCTTCCEECCHHHHHHHH--H---HH----HHHHHHHHHHHHHSSSCCC-C-B---CCC-CH
T ss_pred ------ChHHHHHHHHhcCCCCCCCccCHHHHHHHH--H---HH----HHHHHHHHHHHhcccCCCC-c-c---ccC-CH
Confidence 999999999986 77999999999987632 2 22 34333322 11111011 0 1 112 46
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHH-HHHHhhh
Q psy5226 498 KELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLA-KELHGYY 540 (582)
Q Consensus 498 ~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La-~~~n~fy 540 (582)
.++.++..+.++...+.+++++++++.+++.+++++ ..+..+|
T Consensus 606 ~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Y 649 (862)
T 1gax_A 606 ADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWY 649 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHH
Confidence 677899999999999999999999999999999998 3455555
No 21
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.91 E-value=6e-23 Score=237.69 Aligned_cols=198 Identities=19% Similarity=0.235 Sum_probs=139.0
Q ss_pred EEEEecCcc-hhHHHH-HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChh
Q psy5226 343 INIQGDDHQ-GTITRV-KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420 (582)
Q Consensus 343 i~V~g~dh~-~~~~~~-~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~ 420 (582)
+|+.|.||+ +||..+ ..+.... |..|. ..+..+||+.. .+|+ |||||+||+|++.|+++++
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~~~--g~~Pf-k~v~~hG~V~d-~~G~--KMSKSlGNvV~P~dvi~~y----------- 613 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVATR--GVSPY-KFLLSHGFVMD-GEGK--KMSKSLGNVIVPDQVVKQK----------- 613 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHH--SSCSB-SEEEEECCEEC-TTSC--CCCSSSSCCCCHHHHHHHT-----------
T ss_pred EEEEEecccccHHHHHHHHHHHhh--CCCcc-cceeEeeeEEc-CCCc--CcccccCCcCChHHHHHhC-----------
Confidence 789999988 687765 3344455 77554 36777799843 4687 9999999999999999999
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCC--CCCccc-ccccCCCCCCH
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGG--DKKSLI-SIKDLSSLNTE 497 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~--~~~~~~-~~~d~~~l~~~ 497 (582)
|.|++||++++..+.+|++||++.+.+.. + ++.|+.+.+|.... ...... ...+...+ .+
T Consensus 614 -------GaDalR~~lls~~~~~D~~fs~~~l~~~~--~-------~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l-~~ 676 (917)
T 1ffy_A 614 -------GADIARLWVSSTDYLADVRISDEILKQTS--D-------DYRKIRNTLRFMLGNINDFNPDTDSIPESEL-LE 676 (917)
T ss_dssp -------CHHHHHHHHHTSCTTSCEECCHHHHHHHH--H-------HHHHHHHHHHHHHHTSTTCCHHHHCCCGGGS-CH
T ss_pred -------CHHHHHHHHhccCCCCCcccCHHHHHHHH--H-------HHHHHHHHHHHHHhhhhccCcccccCCcccc-CH
Confidence 99999999999888999999999987622 1 34566665543211 011000 00011113 46
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHH-HHHhhhhcc---cccCCChhhhHHHHHHHHHHHHHHHHHHHh
Q psy5226 498 KELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAK-ELHGYYNTE---RILVKNITIKMARLALIYSIGQVLNNGLKL 573 (582)
Q Consensus 498 ~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~-~~n~fy~~~---~vl~~~~~~~~~RL~L~~a~~~vL~~~L~l 573 (582)
.++.++..+.++.+.+.+++++++++.+++++++++. .++.||-+. +.....+. ...|.....+...+|+..+.|
T Consensus 677 ~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~-~~~r~~~~~~l~~~l~~l~~l 755 (917)
T 1ffy_A 677 VDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRD-SHIRRSMQTVLYQILVDMTKL 755 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999998 687777532 22222111 233555556666777777777
Q ss_pred cC
Q psy5226 574 IG 575 (582)
Q Consensus 574 LG 575 (582)
|.
T Consensus 756 La 757 (917)
T 1ffy_A 756 LA 757 (917)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 22
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.90 E-value=2.5e-23 Score=224.07 Aligned_cols=142 Identities=25% Similarity=0.269 Sum_probs=105.1
Q ss_pred CCcEEEEeccCCCCcceEEEccCCcccc-chhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCc
Q psy5226 296 DGALWLRTTDYGDDKDRVVRKSNGDFTY-FVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPN 374 (582)
Q Consensus 296 ~Ga~~~~~~~~g~~~~~vl~ksDG~~~Y-~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~ 374 (582)
.|+++++.+.+| |.||+|+||.+|| ++.++..+.+ +.+++ |+|.||..++.++..+++++ |+++| .
T Consensus 182 ~G~~~~~~~~~~---D~Vl~RsDG~ptY~~a~vvDD~~~----githv--irG~D~~~~t~~q~~l~~aL--G~~~p--~ 248 (481)
T 2o5r_A 182 KGEVVFKTGAIG---DFVIMRSNGLPTYNFACVVDDMLM----EITHV--IRGDDHLSNTLRQLALYEAF--EKAPP--V 248 (481)
T ss_dssp TEEEEECTTSSC---BEEEECTTSCBCHHHHHHHHHHHT----TCSEE--EEEGGGHHHHHHHHHHHHHT--TCCCC--E
T ss_pred cceeEeccccCC---CeEEEccCCCcchhhHHHHHHHhC----CCCeE--EEChhHHHhHHHHHHHHHHc--CCCCC--e
Confidence 355666555443 7899999999999 4555555554 56777 69999999999999999999 99876 6
Q ss_pred EEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh---h----hhcCCChhhHhhhhcchhhHHHHHhccCCCCcccc
Q psy5226 375 YILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK---T----ESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIF 447 (582)
Q Consensus 375 ~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~----~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F 447 (582)
+.|++++ ++.+|+ |||||+|++ ++++++++... + ..-..+.....++.--.+++++|++++.+.++..|
T Consensus 249 ~~H~pli-l~~~G~--KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~e~i~~f~l~~~~~~~~~f 324 (481)
T 2o5r_A 249 FAHVSTI-LGPDGK--KLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLEELISSFSLDRLSPNPAIF 324 (481)
T ss_dssp EEEECCE-ECTTSS--BCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHHHHHHHCCGGGBCSSCEEC
T ss_pred EEEEeeE-ECCCCC--cccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHHhCChhhCCccCccc
Confidence 8899985 566888 999999998 89999987421 1 11111110001111124789999999999999999
Q ss_pred cHHHHhh
Q psy5226 448 DIDLALK 454 (582)
Q Consensus 448 ~~~~~~~ 454 (582)
||+++..
T Consensus 325 d~~kl~~ 331 (481)
T 2o5r_A 325 DPQKLKW 331 (481)
T ss_dssp CHHHHHH
T ss_pred ChHHhhh
Confidence 9999988
No 23
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.89 E-value=1.6e-21 Score=223.35 Aligned_cols=119 Identities=14% Similarity=0.213 Sum_probs=92.8
Q ss_pred ecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhcc-CCCCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226 391 KISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISR-KSDTDFIFDIDLALKRSDENPVYYIQYAHA 469 (582)
Q Consensus 391 KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~-~~~~~~~F~~~~~~~~~~~n~~~ylqYa~a 469 (582)
|||||+||+|++.|+++++ |.|++|||+|+. .+.+|++||.+.+.... .++ .
T Consensus 639 KMSKSkGNvVdP~diIekY------------------GADalRl~ll~~~~~~~dl~~s~~~ie~a~-----rfl----~ 691 (880)
T 4arc_A 639 KMSKSKNNGIDPQVMVERY------------------GADTVRLFMMFASPADMTLEWQESGVEGAN-----RFL----K 691 (880)
T ss_dssp ECCTTTTCCCCHHHHHHHH------------------CHHHHHHHHHHSSCTTSCEECCHHHHHHHH-----HHH----H
T ss_pred cccCcCCCCCCHHHHHHHc------------------CchHHHHHHHhcCCCCCCcccCHHHHHHHH-----HHH----H
Confidence 9999999999999999999 999999999998 67999999999876521 133 5
Q ss_pred HHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHH-hhchHHHHHHHHHHHHHHHhh
Q psy5226 470 RIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK-DLCPHYVAFYLRDLAKELHGY 539 (582)
Q Consensus 470 R~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~-~~~p~~l~~yl~~La~~~n~f 539 (582)
|+.++++........ ...+...+ .+.++.|+..+.+....+.++++ +++.+.+++.+++++..+|+|
T Consensus 692 rlwn~~~~~~~~~~~--~~~~~~~l-~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~ 759 (880)
T 4arc_A 692 RVWKLVYEHTAKGDV--AALNVDAL-TENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKA 759 (880)
T ss_dssp HHHHHHHHHHHTCCC--CCCCSTTC-CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccc--cccccccC-CHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhh
Confidence 666655543111100 01111223 46778899999999999999999 799999999999999999986
No 24
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.89 E-value=8.2e-23 Score=224.51 Aligned_cols=266 Identities=18% Similarity=0.206 Sum_probs=176.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhH
Q psy5226 96 SSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQ 175 (582)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q 175 (582)
.+.++..++..+++.|+.||... .++|++.|+ |||+|+|||||+|++++++.+||- +-|-=+ --|.|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~i---lRieDtD~- 173 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRRC---FELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFI---LRIEDTDT- 173 (592)
T ss_dssp ----------------CCCCCCC---CCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEE---ECBCCCCS-
T ss_pred ChHHHHHHHHHHHHcChhhcccC---CCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEE---EEecCcCh-
Confidence 35677888899999999999752 357999999 999999999999999999999984 222222 22222110
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5226 176 ITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDI 255 (582)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~ 255 (582)
+... ..+.+.+.+
T Consensus 174 -------------------------------------------------------~r~~------------~~~~~~I~~ 186 (592)
T 3al0_C 174 -------------------------------------------------------ERSS------------REYEQQILE 186 (592)
T ss_dssp -------------------------------------------------------SSCC------------HHHHHHHHH
T ss_pred -------------------------------------------------------hhcc------------HHHHHHHHH
Confidence 0111 233456788
Q ss_pred HHhhhCCccccc---------ccccccccCCChHHHHHHHHHcCCeee-----------------------eCC---cEE
Q psy5226 256 DLKIFGVKFDNY---------CLESSLYKTGKVSLVTKLLIQSGKTYY-----------------------KDG---ALW 300 (582)
Q Consensus 256 ~~~~lgI~fD~~---------~~ES~~~~~~~i~~~i~~L~~~g~~~~-----------------------~~G---a~~ 300 (582)
+|++||+.+|.- ++-|+.. +...++++.|.++|.+|. .+| +++
T Consensus 187 dL~wlGl~~D~~~~~gG~~gp~~qSer~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR 264 (592)
T 3al0_C 187 SLRWCGLDWDEGPDIGGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIK 264 (592)
T ss_dssp HHHHTTCCCSBBTTTBCTTCCCBSTTCH--HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEE
T ss_pred HHHHcCCCCCCCCCcCCCCCCeeeeCCH--HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEE
Confidence 999999999972 2345432 567899999999999996 245 567
Q ss_pred EEec----cC------------CCCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHH
Q psy5226 301 LRTT----DY------------GDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAI 364 (582)
Q Consensus 301 ~~~~----~~------------g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l 364 (582)
++.+ .| ++..|.||.|+||.++|.. |...+....+.+++ |+|.||+.+..+...+.+++
T Consensus 265 ~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~---a~vvDD~~~githv--irG~D~~~~t~~q~~l~~al 339 (592)
T 3al0_C 265 FKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF---AVVVDDHLMRISHV--FRGEDHLSNTPKQLMIYEAF 339 (592)
T ss_dssp ECCCSSCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHH---HHHHHHHHTTCSBC--CEEGGGGGGHHHHHHHHTTT
T ss_pred EECCCCCceeeecccceeeeccccCCCeEEEcCCCCeehhh---HHHHHHHhcCCCeE--EEchhhHhCHHHHHHHHHHh
Confidence 7665 12 2346789999999999984 44455666678888 69999999999999999999
Q ss_pred HcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh---h---hh-cCCChhhHhhhhcchhhHHHHHh
Q psy5226 365 NIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK---T---ES-KNDSIEFREDLIRGRDLMRFFLI 437 (582)
Q Consensus 365 ~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~---~~-~~~~~~~~~~~~~~~~airy~~l 437 (582)
|+++| .+.|++++ ++.+|+ |||||+|+ +++.++.+.+.. + .. -+.+.... ++..-.+.++.|.+
T Consensus 340 --g~~~P--~~~hlpli-~~~~g~--KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~s~~~~-e~~s~~e~i~~f~~ 410 (592)
T 3al0_C 340 --GWEAP--VFMHIPLI-LGSDRT--PLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGD-EIFTIEEKLQSFDP 410 (592)
T ss_dssp --TCCCC--BCCEECCC-BCTTSS--BCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTBCCCSC-SCCCTTTTGGGCCT
T ss_pred --CCCCC--eEEEeeee-eCCCCC--cccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCccc-ccCCHHHHHhhCCh
Confidence 99876 56788886 445676 99999999 589998875421 1 11 11110000 11112346778888
Q ss_pred ccCCCCcccccHHHHhh
Q psy5226 438 SRKSDTDFIFDIDLALK 454 (582)
Q Consensus 438 ~~~~~~~~~F~~~~~~~ 454 (582)
..-+.++..||++++..
T Consensus 411 ~~i~~~~~~fd~~kl~~ 427 (592)
T 3al0_C 411 KDISNKGVIFDYQKLEW 427 (592)
T ss_dssp TSBCSSCCBCCHHHHHH
T ss_pred hhcCcccceeCHHHHhh
Confidence 88788889999999866
No 25
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.88 E-value=4.3e-21 Score=221.27 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=97.9
Q ss_pred ecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhc-cCCCCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226 391 KISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLIS-RKSDTDFIFDIDLALKRSDENPVYYIQYAHA 469 (582)
Q Consensus 391 KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~-~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~a 469 (582)
|||||+||+|++.|+++++ |.|++||++++ ..+.+|++||++.+... ...++
T Consensus 637 KMSKSkGNvVdP~diI~~y------------------GADalRl~ll~~~~~~~D~~fs~~~v~~~---------~~~l~ 689 (878)
T 2v0c_A 637 VMSKSKGNGVMVGPFVKEQ------------------GADIARITILFAAPPENEMVWTEEGVQGA---------WRFLN 689 (878)
T ss_dssp ECSGGGTCCCBHHHHHHHS------------------CHHHHHHHHHHHSCTTSCEEECHHHHHHH---------HHHHH
T ss_pred HhhccCCCcccHHHHHHHc------------------CccHHHHHHhccCCCCCCceeCHHHHHHH---------HHHHH
Confidence 9999999999999999999 99999999998 67899999999998652 13457
Q ss_pred HHHHHHHhcCCC---CCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhc
Q psy5226 470 RIFSLLNQWGGD---KKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNT 542 (582)
Q Consensus 470 R~~silrk~~~~---~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~ 542 (582)
|+.++++++... ..+ ..+...+ .+.++.|+..+.++.+.+.+++++++++.+++.+++++..+|+|.+.
T Consensus 690 Rl~n~~~~~~~~~~~~~~---~~~~~~l-~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~ 761 (878)
T 2v0c_A 690 RIYRRVAEDREALLETSG---VFQAEAL-EGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKD 761 (878)
T ss_dssp HHHHHHHHHHHHHHTCCC---CCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccc---ccCcccC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhccc
Confidence 888887654211 000 0011123 46788899999999999999999999999999999999999998653
No 26
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.85 E-value=1.5e-21 Score=168.20 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeE
Q psy5226 4 EEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSI 83 (582)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v 83 (582)
+|++.|.+.+++++.++.. +....+.|+.|++++|||||||+||.|||.+|++|++||++|++.|+.++ .|++|
T Consensus 5 ~i~~~l~~~i~~al~~~~~--~~~~~~~ve~p~~~~~GD~a~n~a~~lak~~~~~P~~iA~~i~~~l~~~~----~i~~v 78 (109)
T 3gdz_A 5 NIQALLSEKVSQALIAAGA--PADCEPQVRQSAKVQFGDYQANGVMAVAKKLGMAPRQLAEQVLSHLDLNG----IANKV 78 (109)
T ss_dssp CHHHHHHHHHHHHHHHTTC--CTTCCCCEEECSSGGGCSEEECCHHHHHHHTTSCHHHHHHHHHHHCCCTT----TEEEE
T ss_pred CHHHHHHHHHHHHHHHcCC--CccCCceeecCCCCCcceeecHHHHHHHHHhCCCHHHHHHHHHHhcCcCC----cEeEE
Confidence 5778888888888887632 11235678899999999999999999999999999999999999998766 89999
Q ss_pred EeecCcEEEEEeCchHHHHHHHHHHHcCCCCC
Q psy5226 84 EIIKPGFINLKISSSIKQKIIKYILSSGIKFG 115 (582)
Q Consensus 84 ~~~~~GfiN~~l~~~~~~~~~~~~~~~~~~~g 115 (582)
+++|||||||+|+++++.+.+..++. +++||
T Consensus 79 evagpGFINf~l~~~~~~~~l~~il~-~~~lG 109 (109)
T 3gdz_A 79 EIAGPGFINIFLDPAFLADNVNRALQ-SERLG 109 (109)
T ss_dssp EEETTTEEEEEECHHHHHHHHHHHHT-TC---
T ss_pred EEeCCCeEEEEECHHHHHHHHHHHHh-cccCC
Confidence 99999999999999999999999887 45665
No 27
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.81 E-value=7.6e-18 Score=196.83 Aligned_cols=135 Identities=17% Similarity=0.261 Sum_probs=105.4
Q ss_pred CcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHh-ccCCCCcccccHHH
Q psy5226 373 PNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLI-SRKSDTDFIFDIDL 451 (582)
Q Consensus 373 ~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l-~~~~~~~~~F~~~~ 451 (582)
..++|+||+.. +|+ |||||+||+|++.|+++++ |.|++||+++ +..+.+|++|+++.
T Consensus 636 k~v~~~G~v~~--~G~--KMSKS~GNvv~p~d~i~~y------------------GaDalR~~ll~~~~~~~d~~fs~~~ 693 (967)
T 1wz2_A 636 KGIAVNGFGTL--EGQ--KMSKSKGNVLNFIDAIEEN------------------GADVVRLYIMSLAEHDSDFDWRRKE 693 (967)
T ss_dssp CCEEEECCEEE--SSS--CCCTTTCCCCBHHHHHHTT------------------CHHHHHHHHHHHCCTTCCEEECHHH
T ss_pred ceEEEeeEEee--CCE--EccccccCCCCHHHHHHHh------------------ChHHHHHHHHhCCCCCCCcccCHHH
Confidence 48899999976 788 9999999999999999999 9999999997 46779999999998
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHH-H
Q psy5226 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYL-R 530 (582)
Q Consensus 452 ~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl-~ 530 (582)
+.+. +.+ +.|+.++++.......+ . ...+ .+.++.++..+.++...+.+++++++.+.++..+ +
T Consensus 694 ~~~~-----~~~----l~rl~n~~~~~~~~~~~---~--~~~~-~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 694 VGKL-----RKQ----IERFYELISQFAEYEVK---G--NVEL-KDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFY 758 (967)
T ss_dssp HHHH-----HHH----HHHHHHHHHHHHSSCCC---C--CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred HHHH-----HHH----HHHHHHHHHHHhcCCCC---C--cccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7552 122 35666666654221111 0 1112 4567778888999999999999999999999865 6
Q ss_pred HHHHHHHhhhhccc
Q psy5226 531 DLAKELHGYYNTER 544 (582)
Q Consensus 531 ~La~~~n~fy~~~~ 544 (582)
.+...+|.|.+.++
T Consensus 759 ~l~~~~n~Yi~~~k 772 (967)
T 1wz2_A 759 SIMNDLRWYLRRTE 772 (967)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 89999998887664
No 28
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.81 E-value=5.7e-20 Score=186.14 Aligned_cols=192 Identities=18% Similarity=0.239 Sum_probs=130.0
Q ss_pred EEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy5226 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNG 204 (582)
Q Consensus 125 v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 204 (582)
|++ =-.|+|+|++||||+|+++ .|++.+.++.+..+--+.|....
T Consensus 6 v~~-RFAPsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~----------------------------- 50 (298)
T 1nzj_A 6 YIG-RFAPSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP----------------------------- 50 (298)
T ss_dssp CEE-EECCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG-----------------------------
T ss_pred eEE-EECcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch-----------------------------
Confidence 444 3469999999999999998 55555556666666656662210
Q ss_pred ccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc-cccccccccCCChHHHH
Q psy5226 205 EYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVT 283 (582)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i 283 (582)
+ .. ..+.+.+.++|++||+.+|. ..+.|+. .+.+.+++
T Consensus 51 ------------R---------------~~------------~~~~~~I~~dL~~LGl~~D~~~~~qSer--~~~y~~~~ 89 (298)
T 1nzj_A 51 ------------R---------------EV------------PGAAETILRQLEHYGLHWDGDVLWQSQR--HDAYREAL 89 (298)
T ss_dssp ------------G---------------SC------------TTHHHHHHHHHHHTTCCCSSCCEEGGGC--HHHHHHHH
T ss_pred ------------h---------------hH------------HHHHHHHHHHHHHcCCCCCCCCeeeeCC--HHHHHHHH
Confidence 0 00 22345578899999999996 5556653 36788999
Q ss_pred HHHHHcCCeeee--------------C------------CcEEEEecc----C-------------CCCcceEEEccCCc
Q psy5226 284 KLLIQSGKTYYK--------------D------------GALWLRTTD----Y-------------GDDKDRVVRKSNGD 320 (582)
Q Consensus 284 ~~L~~~g~~~~~--------------~------------Ga~~~~~~~----~-------------g~~~~~vl~ksDG~ 320 (582)
+.|.++|++|.- + .+++++.++ | ++..|.||.|+||.
T Consensus 90 ~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~ 169 (298)
T 1nzj_A 90 AWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGL 169 (298)
T ss_dssp HHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSC
T ss_pred HHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCC
Confidence 999999999962 1 356665543 1 12357899999999
Q ss_pred cccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcc
Q psy5226 321 FTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYI 400 (582)
Q Consensus 321 ~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v 400 (582)
++|. +|++.++...+.+++| .|.||..+..++..+.+++ |++++ .+.|++++ ++.+|+ |||||.|++
T Consensus 170 PtY~---la~vvdD~~~giThvI--rG~D~l~~t~~q~~l~~al--G~~~p--~~~H~pll-~~~~g~--KLSKR~g~~- 236 (298)
T 1nzj_A 170 FAYN---LAVVVDDHFQGVTEIV--RGADLIEPTVRQISLYQLF--GWKVP--DYIHLPLA-LNPQGA--KLSKQNHAP- 236 (298)
T ss_dssp BCHH---HHHHHHHHHTTCCEEE--EEGGGHHHHHHHHHHHHHH--TCCCC--EEEEECBC-CC----------------
T ss_pred Eeee---eeeeeEHHhcCCCEEE--eCccccccHHHHHHHHHHc--CCCCC--eEEEeeee-ECCCCC--cccccCCcc-
Confidence 9995 8899988888888884 5999999888888888999 99876 66899986 334676 999999997
Q ss_pred cHHHH
Q psy5226 401 TIRNL 405 (582)
Q Consensus 401 ~l~dl 405 (582)
+++++
T Consensus 237 ~v~~~ 241 (298)
T 1nzj_A 237 ALPKG 241 (298)
T ss_dssp CCCSS
T ss_pred ChhcC
Confidence 55544
No 29
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.79 E-value=1.5e-18 Score=186.59 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhhCCccccc---------ccccccccCCChHHHHHHHHHcCCeee-----------------------eC
Q psy5226 249 LRREQDIDLKIFGVKFDNY---------CLESSLYKTGKVSLVTKLLIQSGKTYY-----------------------KD 296 (582)
Q Consensus 249 ~~~~~~~~~~~lgI~fD~~---------~~ES~~~~~~~i~~~i~~L~~~g~~~~-----------------------~~ 296 (582)
+.+.+.++|++||+.+|.- ++.|+.. +...++++.|.++|.+|. .+
T Consensus 76 ~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~--~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~ 153 (488)
T 3afh_A 76 YEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEK 153 (488)
T ss_dssp HHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCH--HHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCH--HHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhc
Confidence 3455788999999999972 3455432 567899999999999996 23
Q ss_pred C---cEEEEecc----C------------CCCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHH
Q psy5226 297 G---ALWLRTTD----Y------------GDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRV 357 (582)
Q Consensus 297 G---a~~~~~~~----~------------g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~ 357 (582)
| ++++++++ | ++..|.||.|+||.++|. +|...+....+.+++ |+|.||..+..+.
T Consensus 154 G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~DG~PtY~---lA~vVDD~~mgIThV--iRG~D~l~~tp~q 228 (488)
T 3afh_A 154 GHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYN---FAVVVDDHLMRISHV--FRGEDHLSNTPKQ 228 (488)
T ss_dssp TCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEECTTSCBCHH---HHHHHHHHHTTCSEE--EEEGGGGGGHHHH
T ss_pred CCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEEecCCCeehh---hHHHHHHHhcCCCEE--EEchhhhhCHHHH
Confidence 5 45665541 1 223578999999999998 445566666788888 6999999999999
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh---h----hhcCCChhhHhhhhcchh
Q psy5226 358 KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK---T----ESKNDSIEFREDLIRGRD 430 (582)
Q Consensus 358 ~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~----~~~~~~~~~~~~~~~~~~ 430 (582)
..+.+++ |+++| .+.|++++ ++.+|+ |||||+|+ +++.++.+.... + ..-+.+.... ++..-.+
T Consensus 229 ~~l~~aL--G~~~P--~f~H~pli-~~~~g~--KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~-e~~s~~e 299 (488)
T 3afh_A 229 LMIYEAF--GWEAP--VFMHIPLI-LGSDRT--PLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGD-EIFTIEE 299 (488)
T ss_dssp HHHHHHH--TCCCC--EEEEECCE-ECTTSS--BCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC-SCCCHHH
T ss_pred HHHHHHc--CCCCC--eEEEEeee-eCCCCC--cccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCccc-ccCCHHH
Confidence 9999999 99876 78898887 456777 99999999 589998876421 1 1111111000 1111234
Q ss_pred hHHHHHhccCCCCcccccHHHHhh
Q psy5226 431 LMRFFLISRKSDTDFIFDIDLALK 454 (582)
Q Consensus 431 airy~~l~~~~~~~~~F~~~~~~~ 454 (582)
.++.|+++.-+.++..||++++..
T Consensus 300 ~i~~f~~~~i~~~~~~fd~~kl~~ 323 (488)
T 3afh_A 300 KLQSFDPKDISNKGVIFDYQKLEW 323 (488)
T ss_dssp HGGGCCGGGSCSSCEECCHHHHHH
T ss_pred HHhhCChhhcCccccccChHHhhh
Confidence 577888888888899999999876
No 30
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.71 E-value=1.3e-16 Score=171.79 Aligned_cols=237 Identities=22% Similarity=0.258 Sum_probs=163.2
Q ss_pred ecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHH
Q psy5226 130 VSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITD 209 (582)
Q Consensus 130 sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 209 (582)
..|+|+|++||||+|++++ |++.+.++.+..+--|.|...
T Consensus 6 FAPSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~----------------------------------- 45 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDR----------------------------------- 45 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSS-----------------------------------
T ss_pred eCCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCc-----------------------------------
Confidence 4699999999999999987 566666777777777777331
Q ss_pred HHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc-cccccccccCCChHHHHHHHHH
Q psy5226 210 IAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSLVTKLLIQ 288 (582)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~~i~~L~~ 288 (582)
+... ..+.+.+.++|++||+.+|. .++.|+.. +...++++.|.+
T Consensus 46 ---------------------~R~~------------~~~~~~i~~dL~wLGl~wde~~~~QS~r~--~~y~~~~~~Li~ 90 (492)
T 2cfo_A 46 ---------------------ERSR------------PEYTENILEGLQWLGLTWDEGPYFQSDRL--DLYRQAIQTLLD 90 (492)
T ss_dssp ---------------------SSCC------------HHHHHHHHHHHHHTTCCCSEEEEEGGGCH--HHHHHHHHHHHH
T ss_pred ---------------------cccc------------hHHHHHHHHHHHHcCCCCCCCCccccCCH--HHHHHHHHHHHH
Confidence 0011 22335567889999999986 45566533 467889999999
Q ss_pred cCCeee-----------------------eC-----------------Cc-EEEE--eccC-----------------CC
Q psy5226 289 SGKTYY-----------------------KD-----------------GA-LWLR--TTDY-----------------GD 308 (582)
Q Consensus 289 ~g~~~~-----------------------~~-----------------Ga-~~~~--~~~~-----------------g~ 308 (582)
+|++|. .+ |. .+++ .+.. ..
T Consensus 91 ~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~ 170 (492)
T 2cfo_A 91 KGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGAD 170 (492)
T ss_dssp TTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGG
T ss_pred CCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccc
Confidence 999983 01 11 1222 2110 01
Q ss_pred C-cceEEEccC-----CccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEE
Q psy5226 309 D-KDRVVRKSN-----GDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVT 382 (582)
Q Consensus 309 ~-~~~vl~ksD-----G~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~ 382 (582)
. .|.||.|+| |.++|. +|...+....+.+++ |.|.||..+..+...+.+++ |+++| .+.|++++
T Consensus 171 ~~~D~Vl~R~d~~p~~G~PtY~---la~vvDD~~~gIthv--iRG~D~~~~t~~q~~l~~al--g~~~P--~~~H~pli- 240 (492)
T 2cfo_A 171 LGGDMVIARAAPRGEIGYPLYN---LVVVVDDIAMGITDV--IRGEDHIGNTPKQILLYEAL--GATPP--NFAHTPLI- 240 (492)
T ss_dssp GCSSEEEECSCCTTSCCCBCHH---HHHHHHHHHTTCSEE--EEEGGGTTHHHHHHHHHHHT--TCCCC--EEEEECCE-
T ss_pred cCCCeEEEEecCCCCCCceeeh---hhhhhhhhcCCCCeE--EEchhhhhCHHHHHHHHHHc--CCCCc--eEEEeeeE-
Confidence 2 478999999 999997 566677776778888 89999999888777778999 99866 78899997
Q ss_pred EeeCCeeeecccCCCCcccHHHHHHHHHh---h----hhcCCCh-hhHhhhhcchhhHHHHHhccCCCCcccccHHHHhh
Q psy5226 383 VIKNGKEVKISKRSGSYITIRNLIKWLSK---T----ESKNDSI-EFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALK 454 (582)
Q Consensus 383 l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~----~~~~~~~-~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~ 454 (582)
++.+|+ |||||.|++ ++.++.+.... + ..-+-+. ....++..-.+.+..|++..-+.++..||++++..
T Consensus 241 l~~~g~--KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i~~f~~~~i~~~~~~~d~~kl~~ 317 (492)
T 2cfo_A 241 LNSTGQ--KLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDWDKLNW 317 (492)
T ss_dssp ECSSSS--BCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHCCSTTBCSSCEECCHHHHHH
T ss_pred ECCCCC--EecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHHHHhhcChhhcCccccccCHHHHHH
Confidence 456888 999999997 88888775321 0 1111111 11111111235677788887777888999998765
No 31
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.70 E-value=5.4e-16 Score=165.87 Aligned_cols=244 Identities=20% Similarity=0.230 Sum_probs=168.1
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
++|++=|+ |+|+|++||||+|++++....|| ++....+--+.|...
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar-----~~~G~filRieDtD~---------------------------- 69 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALYPWAFAR-----KMKGTFVLRIEDTDV---------------------------- 69 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG----------------------------
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEeCCCCc----------------------------
Confidence 34667665 99999999999999998666666 344444444444211
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc-cccccccccCCChHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDN-YCLESSLYKTGKVSL 281 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~-~~~ES~~~~~~~i~~ 281 (582)
+... ..+.+.+.++|++||+.+|. .++.|+.. +...+
T Consensus 70 ----------------------------~R~~------------~~~~~~i~~dl~wlGl~~d~~~~~qS~r~--~~y~~ 107 (490)
T 4g6z_A 70 ----------------------------ERSS------------QEAVDAILEGMAWLGLDYDEGPYYQMQRM--DRYRE 107 (490)
T ss_dssp ----------------------------GGCC------------HHHHHHHHHHHHHTTCCCSEEEEEGGGCH--HHHHH
T ss_pred ----------------------------cccc------------HHHHHHHHHHHHHcCCCCCCCCcccccCH--HHHHH
Confidence 0011 23345678899999999986 24456432 56789
Q ss_pred HHHHHHHcCCeee-----e------------------CCc-----------------EEEEec--cC----------C--
Q psy5226 282 VTKLLIQSGKTYY-----K------------------DGA-----------------LWLRTT--DY----------G-- 307 (582)
Q Consensus 282 ~i~~L~~~g~~~~-----~------------------~Ga-----------------~~~~~~--~~----------g-- 307 (582)
+++.|.++|++|. + +|. .++++. .. |
T Consensus 108 ~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~ 187 (490)
T 4g6z_A 108 VLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRV 187 (490)
T ss_dssp HHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEE
T ss_pred HHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeee
Confidence 9999999999983 0 010 011211 00 1
Q ss_pred -----CCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEE
Q psy5226 308 -----DDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVT 382 (582)
Q Consensus 308 -----~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~ 382 (582)
.-.|.||.|+||.++|. +|...+....+.+++ |.|.||.....+...+.+++ |+++| .+.|++++
T Consensus 188 ~~~~~~~~D~Vl~R~DG~ptY~---lA~vVDD~~mgIThV--iRG~D~l~~tprq~~l~~aL--G~~~P--~f~HlpLi- 257 (490)
T 4g6z_A 188 EISNEELDDLVVARPDGTPMYN---FCVVVDDLDMGITHV--IRGDDHVNNTPRQINILRAL--GGEVP--VYAHLPTV- 257 (490)
T ss_dssp EEEGGGCCCCEEECTTSCBCHH---HHHHHHHHHTTCCEE--EEEGGGGGGHHHHHHHHHHT--TCCCC--EEEEECCE-
T ss_pred eeccccCCCeEEEeeCCCccch---hHHHHHHHhcCCCEE--EeccccccChHHHHHHHHHc--CCCCC--eEEEecce-
Confidence 11467999999999997 577788777788888 78999999999888889999 99876 68899887
Q ss_pred EeeCCeeeecccCCCCcccHHHHHHHHHhh-------hhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhh
Q psy5226 383 VIKNGKEVKISKRSGSYITIRNLIKWLSKT-------ESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKR 455 (582)
Q Consensus 383 l~~~G~~~KMSkr~G~~v~l~dll~~~~~~-------~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~ 455 (582)
++.+|+ |||||.|. +++.++.+.+... .....+.. ..++..-.+.+..|++..-..++..||++++..
T Consensus 258 ~~~~g~--KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~-~~e~~s~~eli~~F~~~~~~~~~~~fd~~KL~~- 332 (490)
T 4g6z_A 258 LNEQGE--KMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHG-DAEIFTREQFVEWFDLEHLGKSPAQYDHNKLNW- 332 (490)
T ss_dssp ECTTSS--BCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCT-TCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHH-
T ss_pred eCCCCC--cccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCC-CccccCHHHHHhhCCHhhCCCCCCccCHHHHHH-
Confidence 556777 99999997 5888887664321 11111111 112222457788999999889999999999876
Q ss_pred cC
Q psy5226 456 SD 457 (582)
Q Consensus 456 ~~ 457 (582)
.|
T Consensus 333 ~N 334 (490)
T 4g6z_A 333 LN 334 (490)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 32
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.67 E-value=9.4e-16 Score=164.26 Aligned_cols=189 Identities=18% Similarity=0.124 Sum_probs=129.3
Q ss_pred HHHHHHHhhhCCccccc---------ccccccccCCChHHHHHHHHHcCCeee-----------------eC--------
Q psy5226 251 REQDIDLKIFGVKFDNY---------CLESSLYKTGKVSLVTKLLIQSGKTYY-----------------KD-------- 296 (582)
Q Consensus 251 ~~~~~~~~~lgI~fD~~---------~~ES~~~~~~~i~~~i~~L~~~g~~~~-----------------~~-------- 296 (582)
+.+.++|++||+.+|.- ++.|+.. +...++++.|.++|.+|. .+
T Consensus 54 ~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~ 131 (468)
T 1j09_A 54 ERILAALKWLGLSYDEGPDVGGPHGPYRQSERL--PLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPP 131 (468)
T ss_dssp HHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCH--HHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCH--HHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCH
Confidence 44677899999999864 3455432 456889999999999983 01
Q ss_pred ---------Cc-EEEE--eccC-----------------CCCcceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEe
Q psy5226 297 ---------GA-LWLR--TTDY-----------------GDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQG 347 (582)
Q Consensus 297 ---------Ga-~~~~--~~~~-----------------g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g 347 (582)
|. .+++ .+.. ..-.|.||.|+||.++|. +|...+....+.+++ |+|
T Consensus 132 ~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~---~a~vvDD~~~githv--irG 206 (468)
T 1j09_A 132 EEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYH---LANVVDDHLMGVTDV--IRA 206 (468)
T ss_dssp HHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHH---HHHHHHHHHTTCCEE--EEE
T ss_pred HHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCCCeEEEecCCCeeeh---hHHHHHHHHCCCCeE--EEC
Confidence 21 1222 2110 012478999999999997 455566666678888 899
Q ss_pred cCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh---h----hhcCCChh
Q psy5226 348 DDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK---T----ESKNDSIE 420 (582)
Q Consensus 348 ~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~----~~~~~~~~ 420 (582)
.||+.+..+...+.+++ |++++ .+.|++++ ++.+|+ |||||+|+. ++.++.+.... + ..-+-+..
T Consensus 207 ~D~~~~t~~q~~l~~al--g~~~p--~~~h~~li-~~~~g~--klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~ 278 (468)
T 1j09_A 207 EEWLVSTPIHVLLYRAF--GWEAP--RFYHMPLL-RNPDKT--KISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMP 278 (468)
T ss_dssp GGGGGGHHHHHHHHHHH--TCCCC--EEEEECCC-BCTTSC--BCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCT
T ss_pred hhhhhhHHHHHHHHHHc--CCCCC--eEEEeeee-eCCCCC--ccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCc
Confidence 99999999999999999 99765 66788876 445676 999999998 88888775421 1 01111111
Q ss_pred hHhhhhcchhhHHHHHhccCCCCcccccHHHHhh
Q psy5226 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALK 454 (582)
Q Consensus 421 ~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~ 454 (582)
...++.--.+.+..|.+..-+.++..||++++..
T Consensus 279 ~~~~~~~~~el~~~f~~~~~~~~~~~~d~~kl~~ 312 (468)
T 1j09_A 279 DGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRW 312 (468)
T ss_dssp TCCSCCCHHHHHHHCCGGGCCCSCCBCCHHHHHH
T ss_pred ccccCCCHHHHHhhCChhhcCccccccChHHhhh
Confidence 0001111235677888888888899999999875
No 33
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.64 E-value=5.6e-15 Score=158.88 Aligned_cols=194 Identities=19% Similarity=0.122 Sum_probs=132.0
Q ss_pred HHHHHHHHhhhCCcccc---------cccccccccCCChHHHHHHHHHcCCeee-----------e-----------C--
Q psy5226 250 RREQDIDLKIFGVKFDN---------YCLESSLYKTGKVSLVTKLLIQSGKTYY-----------K-----------D-- 296 (582)
Q Consensus 250 ~~~~~~~~~~lgI~fD~---------~~~ES~~~~~~~i~~~i~~L~~~g~~~~-----------~-----------~-- 296 (582)
.+.+.++|++||+.+|. .++.|+.. +...++++.|.++|.+|. . +
T Consensus 58 ~~~I~~~L~wlGl~wDegp~~gG~~~~~~QS~r~--~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~ 135 (498)
T 2ja2_A 58 YLALLDALRWLGLDWDEGPEVGGPYGPYRQSQRA--EIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNF 135 (498)
T ss_dssp HHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCH--HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCG
T ss_pred HHHHHHHHHHcCCCcCCCcCcCCCCCCeeeecCH--HHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCc
Confidence 35567889999999986 34456432 467889999999999983 0 1
Q ss_pred ---------------Cc-EEEE--ecc----C------------CCCcceEEEccCCccccchhhHHHHHhhhhcCCceE
Q psy5226 297 ---------------GA-LWLR--TTD----Y------------GDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQA 342 (582)
Q Consensus 297 ---------------Ga-~~~~--~~~----~------------g~~~~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~ 342 (582)
|. .+++ .++ | ..-.|.||.|+||.++|. +|...+....+.+++
T Consensus 136 cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~---lA~vVDD~~mgithv 212 (498)
T 2ja2_A 136 DRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYT---LVNPCDDALMKITHV 212 (498)
T ss_dssp GGGCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHH---HHHHHHHHHTTCCEE
T ss_pred cccCCHHHHHhhhccCCCceEEEECCCCceEEEecccceEeecccccCcceeEccCCCcchh---hHHHHHhhhcCCCEE
Confidence 21 1222 210 0 112467999999999997 667777777789998
Q ss_pred EEEEecCcchhHHHHHHHHHHHHc---CCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHh---h----
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINI---GIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK---T---- 412 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~---G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~---~---- 412 (582)
|+|.||..+..+...+.+++.. |+++| .+.|++++ ++.+|+ |||||+|+ ++++++.+.... +
T Consensus 213 --iRG~D~~~~t~~q~~l~~aL~~~g~g~~~P--~~~h~pli-l~~~g~--KLSKR~g~-~~l~~~r~~G~~peAl~~~l 284 (498)
T 2ja2_A 213 --LRGEDLLPSTPRQLALHQALIRIGVAERIP--KFAHLPTV-LGEGTK--KLSKRDPQ-SNLFAHRDRGFIPEGLLNYL 284 (498)
T ss_dssp --EEEGGGGGGHHHHHHHHHHHHHTTSCCCCC--EEEEECCE-ECSSSS--BCCTTSGG-GBHHHHHHHTCCHHHHHHHH
T ss_pred --EEChhhhhccHHHHHHHHHHHhhcCCCCCC--eEEEeeee-ECCCCC--cccccCCc-ccHHHHHhCCCCHHHHHHHH
Confidence 6999999998877777666522 55544 77888887 556777 99999998 589998876421 1
Q ss_pred hhcCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226 413 ESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSD 457 (582)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~ 457 (582)
..-..+.....++.--.+.+..|++..-+.++..||++++.. .|
T Consensus 285 ~~lG~s~~~~~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~-~N 328 (498)
T 2ja2_A 285 ALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQKKADA-LN 328 (498)
T ss_dssp HTSSCCSCSSCCCCCHHHHHHHCCGGGCCCSCEECCHHHHHH-HH
T ss_pred HHhCCCCCcccccCCHHHHHhhCChhhcCccccccCHHHHHH-hh
Confidence 111111110011111235688899999889999999999877 44
No 34
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.63 E-value=1.3e-15 Score=164.12 Aligned_cols=229 Identities=17% Similarity=0.226 Sum_probs=149.1
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAY 202 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
.+|+. =-.|+|+|++||||+|++++ |++.+.+|.+..+--++|....
T Consensus 95 g~v~t-RFaPsPtG~LHIGhaRtal~-----n~l~Ar~~~G~~iLRieDtD~~--------------------------- 141 (553)
T 3aii_A 95 GEVVL-RFAPNPSGPLHIGHARAAIL-----NHEYARKYDGRLILRIEDTDPR--------------------------- 141 (553)
T ss_dssp SCCEE-EECCCSSSSCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCCGG---------------------------
T ss_pred CceEE-EeCCCCCCCccHHHHHHHHH-----HHHHHHHcCCEEEEEECcCCcc---------------------------
Confidence 34555 44699999999999999988 4555557777777777773310
Q ss_pred CcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHH
Q psy5226 203 NGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLV 282 (582)
Q Consensus 203 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~ 282 (582)
+ .. ..+.+.+.+++++||+.+|...+-|+.. +.+.++
T Consensus 142 --------------R---------------~~------------~e~~~~I~edL~wLGl~wd~~~~qSdr~--~~y~~~ 178 (553)
T 3aii_A 142 --------------R---------------VD------------PEAYDMIPADLEWLGVEWDETVIQSDRM--ETYYEY 178 (553)
T ss_dssp --------------G---------------CC------------TTHHHHHHHHHHHHTCCCSEEEEGGGGH--HHHHHH
T ss_pred --------------c---------------cc------------HHHHHHHHHHHHHcCCCCCCCcccccCH--HHHHHH
Confidence 0 01 1233556788999999999777777543 567889
Q ss_pred HHHHHHcCCeeeeC------------C--------------------------cEEEEecc---CC--CCcceEEEcc--
Q psy5226 283 TKLLIQSGKTYYKD------------G--------------------------ALWLRTTD---YG--DDKDRVVRKS-- 317 (582)
Q Consensus 283 i~~L~~~g~~~~~~------------G--------------------------a~~~~~~~---~g--~~~~~vl~ks-- 317 (582)
++.|.++|++|.-. | ..++++.- .. ...|.++.|.
T Consensus 179 ~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~ 258 (553)
T 3aii_A 179 TEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVE 258 (553)
T ss_dssp HHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECC
T ss_pred HHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecC
Confidence 99999999999410 1 12222210 00 0124567665
Q ss_pred -------CCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeee
Q psy5226 318 -------NGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEV 390 (582)
Q Consensus 318 -------DG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~ 390 (582)
|+--.|.+=|+|...+....+.+++ +.|.||+.+..+...+.+++ |++.| .+.|++++++ +|+
T Consensus 259 ~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThv--iRG~D~~~nt~~Q~~l~~al--G~~~P--~y~H~~~L~~--~g~-- 328 (553)
T 3aii_A 259 AEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHV--LRGKDHLANREKQEYLYRHL--GWEPP--EFIHYGRLKM--DDV-- 328 (553)
T ss_dssp SCBTTTBTSCCEEECHHHHHHHHHHHTTCCEE--EC-----CHHHHHHHHHHHH--TCCCC--EEECCCCBC--------
T ss_pred CCCCccCCCceeeeeeeeeeeeeeccCCCceE--eccHhhhhCHHHHHHHHHHc--CCCCC--eEEEeeEEec--CCc--
Confidence 2111344446777776655577777 68999997766666667888 98766 4569999865 677
Q ss_pred ecccCCCC---------------cccHHHHHHHHHhhhhcCCChhhHhhhhcchhhHHHHHhccCC-CCcccccHHHHhh
Q psy5226 391 KISKRSGS---------------YITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKS-DTDFIFDIDLALK 454 (582)
Q Consensus 391 KMSkr~G~---------------~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~airy~~l~~~~-~~~~~F~~~~~~~ 454 (582)
|||||+|+ ..++.++.+.. +.+++||.|+++... .++..|||+.+.+
T Consensus 329 KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG-----------------~~PeaIr~fl~~~G~s~~~~~~s~~~L~~ 391 (553)
T 3aii_A 329 ALSTSGAREGILRGEYSGWDDPRLGTLRAIARRG-----------------IRPEAIRKLMVEIGVKIADSTMSWKKIYG 391 (553)
T ss_dssp ---CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTT-----------------CCHHHHHHHHHHHTTCSSCBCCCHHHHHH
T ss_pred eechhhhhhhccccccccccCcchHHHHHHHHcC-----------------CCHHHHHHHHHhcCCCCccccccHHHHHH
Confidence 99999997 66788888763 189999999999877 6899999999876
No 35
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.60 E-value=1.7e-14 Score=156.95 Aligned_cols=133 Identities=23% Similarity=0.221 Sum_probs=100.6
Q ss_pred ceEEEccCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeee
Q psy5226 311 DRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEV 390 (582)
Q Consensus 311 ~~vl~ksDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~ 390 (582)
|.|+.|+||.++|. +|...+....+.+++ |.|.||.....+...+.+++ |+++| .+.|++++ +..+|+
T Consensus 205 D~vi~r~dg~PtY~---fA~vVDD~~mgITHV--iRG~D~l~sTp~q~~l~~al--g~~~P--~y~H~pli-~~~~g~-- 272 (512)
T 4gri_A 205 DPVILKSDGLPTYH---LANVVDDYLMKITHV--LRAQEWVSSGPLHVLLYKAF--KWKPP--IYCHLPMV-MGNDGQ-- 272 (512)
T ss_dssp SCEEECTTSCBCHH---HHHHHHHHHTTCSEE--EEEGGGGGGHHHHHHHHHHH--TCCCC--EEEEECCC-BCTTSS--
T ss_pred ceEEEecCCccccc---ccceecccccCCcee--ccccccccccHHHHHHHHHc--CCCCC--eEEecchh-cccccc--
Confidence 57999999999994 777888777777888 89999998888777888999 99877 78899988 456787
Q ss_pred ecccCCCCcccHHHHHHHHHhh------hh-cCCChhhHhhhhcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226 391 KISKRSGSYITIRNLIKWLSKT------ES-KNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSD 457 (582)
Q Consensus 391 KMSkr~G~~v~l~dll~~~~~~------~~-~~~~~~~~~~~~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~ 457 (582)
|||||.|.. ++.++.+++..- .. .+.+.+...++..-.+.+.+|++.+-..++..||++++.. +|
T Consensus 273 kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~-~N 344 (512)
T 4gri_A 273 KLSKRHGST-ALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQFFSIEKINKSPAIFDYHKLDF-FN 344 (512)
T ss_dssp BCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHH-HH
T ss_pred ccCcccccc-cHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHHHHhcCCCCCCccccHHHHHH-HH
Confidence 999999974 888887775321 11 1112111122222456788999999999999999999987 44
No 36
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.52 E-value=1.8e-13 Score=147.68 Aligned_cols=243 Identities=20% Similarity=0.209 Sum_probs=156.7
Q ss_pred chHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHH
Q psy5226 97 SSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQI 176 (582)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~ 176 (582)
..|+...+..-+..|. + ++|+. =..|+|+|+|||||+|++++-..+|| +|.+..+--+.|...
T Consensus 8 ~~fi~~~i~~dl~~~~-~--------~~v~t-RFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~-- 70 (553)
T 1qtq_A 8 TNFIRQIIDEDLASGK-H--------TTVHT-RFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNP-- 70 (553)
T ss_dssp CCHHHHHHHHHHHHTS-C--------SSCEE-EECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG--
T ss_pred hhHHHHHHHhHhhcCC-c--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCc--
Confidence 3567777766666542 2 12444 45799999999999999988655555 566666666666321
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5226 177 TNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDID 256 (582)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
+... ..+.+.+.++
T Consensus 71 ------------------------------------------------------~R~~------------~e~~~~I~ed 84 (553)
T 1qtq_A 71 ------------------------------------------------------VKED------------IEYVESIKND 84 (553)
T ss_dssp ------------------------------------------------------GGCC------------HHHHHHHHHH
T ss_pred ------------------------------------------------------hhcC------------HHHHHHHHHH
Confidence 0011 2334567888
Q ss_pred HhhhCCccc-ccccccccccCCChHHHHHHHHHcCCeeeeC----------------Cc---------------------
Q psy5226 257 LKIFGVKFD-NYCLESSLYKTGKVSLVTKLLIQSGKTYYKD----------------GA--------------------- 298 (582)
Q Consensus 257 ~~~lgI~fD-~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~----------------Ga--------------------- 298 (582)
|++||+..| ...+-|+.. +.+.+.++.|+++|++|.-. |.
T Consensus 85 L~wLGl~wde~~~~qSer~--~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~ 162 (553)
T 1qtq_A 85 VEWLGFHWSGNVRYSSDYF--DQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRA 162 (553)
T ss_dssp HHHTTCCCSSSCEEGGGGH--HHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCCeehcccH--HHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhC
Confidence 999999995 344455432 34567888999999998410 11
Q ss_pred -------EEEEec--c-CC--CCcceEEEc---------cCC---ccccchhhHHHHHhhhhcCCceEEEEEecCcchhH
Q psy5226 299 -------LWLRTT--D-YG--DDKDRVVRK---------SNG---DFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTI 354 (582)
Q Consensus 299 -------~~~~~~--~-~g--~~~~~vl~k---------sDG---~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~ 354 (582)
.+++.. - .. ...|.++.| +|+ .|+| ++|...+....+.+++ +.|.+|+.+-
T Consensus 163 G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY---~la~vvDDh~~GITHv--iRg~e~~~n~ 237 (553)
T 1qtq_A 163 GGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMY---DFTHCISDALEGITHS--LCTLEFQDNR 237 (553)
T ss_dssp TCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECH---HHHHHHHHHHTTCSEE--EEEGGGTTTH
T ss_pred CCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCcccccc---ccccEEEeccCCcceE--eeccchhhhH
Confidence 111110 0 00 012457777 453 4444 4677777666677887 8899999877
Q ss_pred HHHHHHHHHHHcCCC-CCCCcEEEEEEEEEeeCCeeeecccCCCC---------------cccHHHHHHHHHhhhhcCCC
Q psy5226 355 TRVKAGLQAINIGIP-NDYPNYILHKMVTVIKNGKEVKISKRSGS---------------YITIRNLIKWLSKTESKNDS 418 (582)
Q Consensus 355 ~~~~~~l~~l~~G~~-~~~~~~~~~~~v~l~~~G~~~KMSkr~G~---------------~v~l~dll~~~~~~~~~~~~ 418 (582)
.....+++++ |++ .| ...|++++++ +|+ |||||+|+ ..++.++.++..
T Consensus 238 ~~q~~l~~al--g~~~~P--~~~~f~hLn~--~g~--KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy-------- 301 (553)
T 1qtq_A 238 RLYDWVLDNI--TIPVHP--RQYEFSRLNL--EYT--VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGY-------- 301 (553)
T ss_dssp HHHHHHHHTS--CCSCCC--EEEEECCCCB--TTS--CCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTC--------
T ss_pred HHHHHHHHHc--CCCCCC--CeEEEEeecC--CCc--cccccccccccccCcccCCCCcchhhHHHHHHCCC--------
Confidence 6666667888 986 44 3337777644 787 99999986 678899988742
Q ss_pred hhhHhhhhcchhhHHHHHhccCCCC-cccccHHHHhh
Q psy5226 419 IEFREDLIRGRDLMRFFLISRKSDT-DFIFDIDLALK 454 (582)
Q Consensus 419 ~~~~~~~~~~~~airy~~l~~~~~~-~~~F~~~~~~~ 454 (582)
.++|||.|+++....+ +..++|..+.+
T Consensus 302 ---------~PeAirnfl~~lG~s~~~~~~e~~~le~ 329 (553)
T 1qtq_A 302 ---------TAASIREFCKRIGVTKQDNTIEMASLES 329 (553)
T ss_dssp ---------CHHHHHHHHHHHCCCSSCCCBCHHHHHH
T ss_pred ---------CHHHHHHHHHHcCCCCCccccchhhHHH
Confidence 7899999988876543 33356555443
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.52 E-value=2.4e-13 Score=152.77 Aligned_cols=245 Identities=17% Similarity=0.175 Sum_probs=159.4
Q ss_pred chHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHH
Q psy5226 97 SSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQI 176 (582)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~ 176 (582)
+.|+...+..-+..|. + ++|+. =..|+|+|+|||||+|++++-..+| .+|.+..+--++|...
T Consensus 48 ~~fi~~ii~~dl~~g~-~--------~~v~t-RFaPSPtG~LHIGhARtAL~n~l~A-----r~~gG~fiLRIEDTD~-- 110 (851)
T 2hz7_A 48 PNFITEIIERDLEAGK-Y--------PRVVT-RFPPDPSGYAHLGHVFASLLDFNTA-----RQYGGQFNLRMDDTNP-- 110 (851)
T ss_dssp CCHHHHHHHHHHHTTS-C--------SSCEE-EECCCSSSCCBHHHHHHHHHHHHHH-----HHTTCEEEEEECCCCT--
T ss_pred HHHHHHHHHHHhhcCC-c--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHH-----HHcCCEEEEEECcCCc--
Confidence 4577777776666432 1 23444 4479999999999999998854444 4677777776666321
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5226 177 TNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDID 256 (582)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
+... ..+.+.|.++
T Consensus 111 ------------------------------------------------------~R~~------------~e~~~~Iled 124 (851)
T 2hz7_A 111 ------------------------------------------------------ELAR------------QEYVDSIADD 124 (851)
T ss_dssp ------------------------------------------------------TTCC------------HHHHHHHHHH
T ss_pred ------------------------------------------------------cccc------------HHHHHHHHHH
Confidence 0011 2334567889
Q ss_pred HhhhCCccc-ccccccccccCCChHHHHHHHHHcCCeeeeC----------------Cc---------------------
Q psy5226 257 LKIFGVKFD-NYCLESSLYKTGKVSLVTKLLIQSGKTYYKD----------------GA--------------------- 298 (582)
Q Consensus 257 ~~~lgI~fD-~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~----------------Ga--------------------- 298 (582)
|++||+.+| ..++-|+.. +.+.++++.|+++|++|.-. |.
T Consensus 125 L~wLGl~wde~~~~qSer~--d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~ 202 (851)
T 2hz7_A 125 LKWLGLDWGEHFYYASDYF--DRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKA 202 (851)
T ss_dssp HHHHTCCCTTCEEEGGGGH--HHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCcccHhhhH--HHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhc
Confidence 999999995 445556533 46788999999999999510 11
Q ss_pred -------EEEEec-c--CC--CCcceEEEccCC-------cc--ccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHH
Q psy5226 299 -------LWLRTT-D--YG--DDKDRVVRKSNG-------DF--TYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRV 357 (582)
Q Consensus 299 -------~~~~~~-~--~g--~~~~~vl~ksDG-------~~--~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~ 357 (582)
.++++. + .. ...|.++.|++. +. .|.+=|+|...+....+.+++ +.|.||+.+....
T Consensus 203 G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHV--iRG~D~~~n~~~q 280 (851)
T 2hz7_A 203 GEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHS--MCSLEFVDNRAIY 280 (851)
T ss_dssp TCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEE--EEEGGGTTTHHHH
T ss_pred CCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCccee--ecchhhhhChHHH
Confidence 111110 0 00 012457777762 11 244445666666655577787 6899999877666
Q ss_pred HHHHHHHHcCCCC-CCCcEEEEEEEEEeeCCeeeecccCCCC---------------cccHHHHHHHHHhhhhcCCChhh
Q psy5226 358 KAGLQAINIGIPN-DYPNYILHKMVTVIKNGKEVKISKRSGS---------------YITIRNLIKWLSKTESKNDSIEF 421 (582)
Q Consensus 358 ~~~l~~l~~G~~~-~~~~~~~~~~v~l~~~G~~~KMSkr~G~---------------~v~l~dll~~~~~~~~~~~~~~~ 421 (582)
..+.+++ |++. + ...|++++++ +|. |||||+|+ ..++.++.+...
T Consensus 281 ~~l~~al--G~~~~P--~~~~fahLn~--~g~--KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy----------- 341 (851)
T 2hz7_A 281 DWLMEKL--NFDPRP--HQYEFGRRGL--EYT--ITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGV----------- 341 (851)
T ss_dssp HHHHHHT--TCSSCC--EEEEECCEEE--TTC--CCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTC-----------
T ss_pred HHHHHHc--CCCCCC--CceEEEEecC--CCc--cccccccccccccCcccCCCCcchhHHHHHHHcCC-----------
Confidence 6667888 9874 4 3347788766 787 99999986 567888887742
Q ss_pred HhhhhcchhhHHHHHhccCCC-CcccccHHHHh
Q psy5226 422 REDLIRGRDLMRFFLISRKSD-TDFIFDIDLAL 453 (582)
Q Consensus 422 ~~~~~~~~~airy~~l~~~~~-~~~~F~~~~~~ 453 (582)
.+++||.|+++.... .+..++|..+.
T Consensus 342 ------~PeAIr~fl~~lG~s~~~~~~e~~~le 368 (851)
T 2hz7_A 342 ------TPEAVRAFAAQIGVSRTNRTVDIAVYE 368 (851)
T ss_dssp ------CHHHHHHHHHHSCCCSSCEEECHHHHH
T ss_pred ------CHHHHHHHHHhcCCCCCcccccHHHHH
Confidence 789999998887664 34446665543
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.23 E-value=2.6e-06 Score=87.31 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=45.0
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 338 GFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 338 ~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
+.+.+ +.|.||..|+...+.+.+.+ |+..+ ..+|++++. ..+|+ |||||.||.|++.|
T Consensus 170 ~~~~v--~~G~DQ~~~~~l~rdla~~~--~~~~p--~~l~~pll~-~l~G~--KMSKS~~n~I~l~d 227 (323)
T 2cyb_A 170 GVDLA--VGGIDQRKIHMLARENLPRL--GYSSP--VCLHTPILV-GLDGQ--KMSSSKGNYISVRD 227 (323)
T ss_dssp TCSEE--EEEGGGHHHHHHHHHHGGGG--TCCCC--EEEEECCCB-CTTSS--BCCTTTTCSCBTTC
T ss_pred CCCEE--EechhhHHHHHHHHHHHHhc--CCCCc--eEEecCccc-CCCCC--cccCCcCceeCCCC
Confidence 34544 89999999998888777878 87654 567788762 34677 99999999999875
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=6.8e-06 Score=86.32 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=35.2
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeC-CeeeecccCCCCc-ccHHHHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKN-GKEVKISKRSGSY-ITIRNLIKW 408 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~-G~~~KMSkr~G~~-v~l~dll~~ 408 (582)
+.|.||..|+...+.+.+.+ |+..+ ..+|++++. ..+ |+ |||||.||. |++.|=-++
T Consensus 187 ~~G~DQ~~~~~l~rdl~~r~--~~~~p--~~l~~pll~-gl~~G~--KMSKS~~ns~I~L~D~p~~ 245 (394)
T 2dlc_X 187 FGGVDQRKIFVLAEENLPSL--GYKKR--AHLMNPMVP-GLAQGG--KMSASDPNSKIDLLEEPKQ 245 (394)
T ss_dssp EEEGGGHHHHHHHHHHGGGG--TCCCC--EEEEECCCC-CCC------------CCSCBTTCCHHH
T ss_pred ecCccHHHHHHHHHHHHHHc--CCCCC--EEEeccccc-CCCCCC--cCCCCCCCCEEeccCCHHH
Confidence 68999999998888888888 88654 667777762 235 66 999999996 887653333
No 40
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.66 E-value=0.00013 Score=76.08 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=35.5
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRNL 405 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~dl 405 (582)
++|.||..|+...+.+.+.+ |+..+ ..+|.+++. ..+|+ |||||.|| .|++.|=
T Consensus 183 ~~G~DQ~~~~~l~rdl~~r~--~~~~p--~~l~~pll~-gldG~--KMSKS~~ns~I~L~d~ 237 (372)
T 1n3l_A 183 FGGIDQRKIFTFAEKYLPAL--GYSKR--VHLMNPMVP-GLTGS--KMSSSEEESKIDLLDR 237 (372)
T ss_dssp EEEGGGHHHHHHHHHHGGGG--TCCCC--EEEEECCCC-CSSCC---------CCSCBTTCC
T ss_pred EcChhHHHHHHHHHHHHHHc--CCCCC--EEEecCccC-CCCcc--cccCCCCCCeEeccCC
Confidence 78999999998888888888 88654 566777762 34677 99999999 6887653
No 41
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.34 E-value=0.00054 Score=71.03 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=40.2
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeC----------------CeeeecccC-CCCcccHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKN----------------GKEVKISKR-SGSYITIRNL 405 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~----------------G~~~KMSkr-~G~~v~l~dl 405 (582)
++|.||..|+...+.+.+.+ |+..+ ...|.+++.=..+ |+ ||||| .|+.|++.|=
T Consensus 182 ~~G~DQ~~~~~l~rdla~r~--~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~--KMSKS~~~~~I~L~d~ 253 (364)
T 2cya_A 182 LGGMDQRKAHMLARDVAEKL--GRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEV--KMSKSKPETAVFVVDS 253 (364)
T ss_dssp EEEGGGHHHHHHHHHHHTTT--TCCCC--EEEEECCCBCSSCC----------------C--BCCSSSGGGSCBTTCC
T ss_pred eccchHHHHHHHHHHHHHHc--CCCCc--eeeccceeeCCCccccccccccccccccccc--ccCCCCCCCEeeccCC
Confidence 78999999998888888888 87654 4567776632222 55 99999 6888987653
No 42
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.04 E-value=0.00039 Score=71.35 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=37.4
Q ss_pred EEEecCcchhHHHHHHHHHHHH--cC--CCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 344 NIQGDDHQGTITRVKAGLQAIN--IG--IPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 344 ~V~g~dh~~~~~~~~~~l~~l~--~G--~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
-.+|.||..|+...+.+.+.+. .| ++.|...+.+.+++. .-+|+ |||||.||.|+|.|
T Consensus 157 vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~-gldG~--KMSKS~~n~I~L~d 218 (340)
T 2g36_A 157 VPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLP-GTDGR--KMSKSYGNIINLEI 218 (340)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCC-CTTSS--CCCGGGTCCCBTTC
T ss_pred EEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccC-CCCcc--ccCCCCCCeEeeeC
Confidence 3799999999988787777661 02 122211112234442 23676 99999999998876
No 43
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=96.95 E-value=0.0003 Score=72.18 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=37.6
Q ss_pred EEEEecCcchhHHHHHHHHHHHH--cC--CCCCCCcEEEE---EEEEEeeCC-eeeecccCCCCcccHHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAIN--IG--IPNDYPNYILH---KMVTVIKNG-KEVKISKRSGSYITIRNL 405 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~--~G--~~~~~~~~~~~---~~v~l~~~G-~~~KMSkr~G~~v~l~dl 405 (582)
+-.+|.||..|+...+.+.+.+. .| +..| ..+|. +++ ..-+| + |||||.||.|+|.|=
T Consensus 144 lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P--~~~~~~~~p~l-~gldG~~--KMSKS~~n~I~L~d~ 209 (337)
T 2el7_A 144 TVPVGEDQVQHIELTREIARRFNHLFGETFPEP--QALLNPEAPRV-PGIDGKA--KMSKSLGNTIGLLEP 209 (337)
T ss_dssp EEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC--EEECCTTSCCC-BCTTSSS--BCCTTTTCCCBSSSC
T ss_pred EEEcccchHHHHHHHHHHHHHHHhhcCcccCCC--eeecccccccc-cCCCCcc--ccCCCCCCeeeCcCC
Confidence 33789999999887777666541 14 3333 33333 343 22367 5 999999999988653
No 44
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=96.73 E-value=0.0018 Score=67.23 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=39.4
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC-CCcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS-GSYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-G~~v~l~d 404 (582)
.+|.||..|+...+..++.+ |.... ..+.+.+++.=..||. .|||||. |+.|++.|
T Consensus 205 pgG~DQ~~~l~l~Rdla~r~--~~~~~-~~~l~~p~l~gL~dG~-~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 205 QLGIDQRKVNMLAREYCDIK--KIKKK-PVILSHGMLPGLLEGQ-EKMSKSDENSAIFMDD 261 (373)
T ss_dssp CCBGGGHHHHHHHHHHHHHH--TCSCC-CEEEEBCCCCCSSTTC-CSCCSSSTTCCCBTTC
T ss_pred EcchhhHHHHHHHHHHHHHh--CCCCC-ceEEeCCeeecCCCCC-CCCcCCCCCCeeecCC
Confidence 67999999998888888888 87532 1455666652113562 2999999 47888754
No 45
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=96.60 E-value=0.0084 Score=60.78 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=36.8
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCC-eeeecccCCCCcccHHHHHHHH
Q psy5226 339 FIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNG-KEVKISKRSGSYITIRNLIKWL 409 (582)
Q Consensus 339 ~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G-~~~KMSkr~G~~v~l~dll~~~ 409 (582)
.+.+ +.|.||..|+...+. + ..+. ....+.+++. .-+| + |||||.|+.|++.|=-+++
T Consensus 164 ~~~v--~~G~DQ~~~~~l~R~----i--~~~~--~~~~~~~~l~-~l~G~~--KMSKS~~~~I~L~d~~~~i 222 (314)
T 2zp1_A 164 VDVA--VGGMEQRKIHMLARE----L--LPKK--VVCIHNPVLT-GLDGEG--KMSSSKGNFIAVDDSPEEI 222 (314)
T ss_dssp CSEE--EEEGGGHHHHHHHHH----H--SSSC--CEEEEECCCB-CTTSSS--BCCTTTTCSCBTTCCHHHH
T ss_pred CCEE--EcChhHHHHHHHHHH----h--cCCC--cEEeeccccc-cCCccc--ccCCCCcceecCCCCHHHH
Confidence 4444 689999998743332 3 2222 2456666653 2356 5 9999999999886644444
No 46
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=96.57 E-value=0.0017 Score=66.86 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=36.3
Q ss_pred EEecCcchhHHHHHHHHHHHH--cC--CCCCCCcEE--EEEEEEEeeCCeeeecccCCCCcccHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAIN--IG--IPNDYPNYI--LHKMVTVIKNGKEVKISKRSGSYITIRNL 405 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~--~G--~~~~~~~~~--~~~~v~l~~~G~~~KMSkr~G~~v~l~dl 405 (582)
++|.||..|+...+.+.+.+. .| +..| ... +.+++. .-+|+ .|||||.||.|++.|=
T Consensus 167 pvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P--~~~~~~~~~l~-~ldG~-~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 167 PVGDDQLPMLEQTREIVRRFNALYAPVLAEP--QAQLSRVPRLP-GLDGQ-AKMSKSLGNAIALGDS 229 (351)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHTCSCSCCC--EEEECSSCSCC-CTTSS-SCCCTTTTCCCBTTCC
T ss_pred EecCCcHHHHHHHHHHHHHHHhhcccccCCC--eeeeecCcccc-CCCCc-cccCCCCCCeecCCCC
Confidence 789999999887777776551 13 2223 222 234442 22562 2999999999988653
No 47
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=96.57 E-value=0.0038 Score=64.24 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=40.7
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC-CCcccHHHHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS-GSYITIRNLIKW 408 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-G~~v~l~dll~~ 408 (582)
.+|.||..|+...+...+.+ |...+ .+.+.+++.-..||. .|||||. |+.|++.|=-++
T Consensus 191 ~~G~DQ~~~i~l~Rdia~r~--~~~~p--~~~~~~~l~gL~dg~-~KMSKS~~~~~I~L~d~p~~ 250 (348)
T 2j5b_A 191 QLGIDQRKVNMLAIEYANDR--GLKIP--ISLSHHMLMSLSGPK-KKMSKSDPQGAIFMDDTEQE 250 (348)
T ss_dssp CCBGGGHHHHHHHHHHHHHT--TCCCC--EEEEBCCCCCTTCSS-CCCSTTCGGGSCBTTCCHHH
T ss_pred EeccChHHHHHHHHHHHHHh--CCCCc--eeecCccccCCCCcc-cccccCCCCCeEeecCCHHH
Confidence 57999999998888888888 87654 345555553223551 2999999 588887654333
No 48
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=96.51 E-value=0.0012 Score=67.19 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=35.9
Q ss_pred EEecCcchhHHHHHHHHHHHHcCC------CCCCCcEEE---EEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGI------PNDYPNYIL---HKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~------~~~~~~~~~---~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
.+|.||..|+.-.+.+.+.+ |. ..| ..++ .+++ ..-+|+ |||||.||.|++.|
T Consensus 144 pvG~DQ~~hi~l~Rdia~r~--n~~~g~~f~~P--~~~~~~~~~~l-~~l~G~--KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 144 PVGKDQIQHVEIARDIALKV--NNEWGEIFTLP--EARVNEEVAVV-VGTDGA--KMSKSYQNTIDIFS 205 (322)
T ss_dssp ECCGGGHHHHHHHHHHHHHH--HHHHCSCSCCC--EEECCCSSCCC-BCTTSS--BCCGGGTCCCBSSC
T ss_pred EeccchHHHHHHHHHHHHHh--cccccCCCCCc--hhhhccccccc-cCCCCC--cCCCCCCCceecCC
Confidence 78999999998777777766 43 222 2222 2333 123676 99999999998864
No 49
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.29 E-value=0.015 Score=65.07 Aligned_cols=57 Identities=25% Similarity=0.280 Sum_probs=39.0
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCC-CcccHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSG-SYITIRNL 405 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G-~~v~l~dl 405 (582)
.+|.||..|+...+...+.+ |.... ..+.+.+++.=..||. .|||||.| +.|++.|=
T Consensus 188 pvG~DQ~~~l~l~Rdla~r~--n~~~~-p~~l~~~~l~gL~dG~-~KMSKS~~~~~I~L~D~ 245 (690)
T 3p0j_A 188 QLGLDQRKVNMLAREYCDLI--GRKLK-PVILSHHMLAGLKQGQ-AKMSKSDPDSAIFMEDT 245 (690)
T ss_dssp CCBGGGHHHHHHHHHHHHHT--TCCCC-CEEEEBCCCCCSSTTC-SSCBTTBGGGSCBTTCC
T ss_pred eccccHHHHHHHHHHHHHHh--CCCCC-ceEeecCeeecCCCCC-cCCCCCCCCCeeeccCC
Confidence 68999999998888888888 87532 1345555542222562 29999998 67876543
No 50
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=96.24 E-value=0.001 Score=68.49 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=27.4
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
||+--|+|.+|+||...++ --..+ |.. ||++ +..|+||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l--~~~~~-lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVM--QSLIE-LQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTG--GGHHH-HHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHh-CCcE--EEEEcCh
Confidence 7899999999999998776 22223 333 7875 5677774
No 51
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.00 E-value=0.02 Score=59.25 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=39.7
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHcCC--CCCCCcEEEEEEEEEeeCCeeeecccCC-CCcccHHH
Q psy5226 339 FIQAINIQGDDHQGTITRVKAGLQAINIGI--PNDYPNYILHKMVTVIKNGKEVKISKRS-GSYITIRN 404 (582)
Q Consensus 339 ~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~--~~~~~~~~~~~~v~l~~~G~~~KMSkr~-G~~v~l~d 404 (582)
+...+-.+|.||..|+.-.+.++..+ |. ..+.....|..++. .-+|+ |||||. ++.|.+.|
T Consensus 207 y~a~~VPVG~DQ~~hleltRdiA~rf--n~~~~~~~P~~~~~~~~p-gldG~--KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 207 YRHVVVPVGADQDPHLRLTRDLADRM--AGVVELERPASTYHKLQP-GLDGR--KMSSSRPDSTIFLTD 270 (372)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHHHHHT--TTTSCCCCCEEEEECCCB-CTTSS--BCCTTSGGGSCBTTC
T ss_pred ccceecccchhhHHHHHHHHHHHHHh--cCcccccChhhhhhcccC-CCCCC--ccCCCCCCcccccCC
Confidence 34444568999999998888888887 62 11212445555542 23676 999998 44676644
No 52
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=92.41 E-value=0.057 Score=55.56 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=31.8
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
+-++|.||..|+..-+.+.+.+ |..++ ..++.+++. ..+|+ |||||.||.|+|.|
T Consensus 213 i~p~G~DQ~~~i~l~rdla~r~--n~~~~--~~l~~pll~-~ldG~--KMSKS~~naI~L~d 267 (356)
T 2pid_A 213 VQLGGSDQLGNIMSGYEFINKL--TGEDV--FGITVPLIT-STTGA--KLGKSAGNAVWLNR 267 (356)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHH--SSCCC--EEEEECCCC----------------CCBSST
T ss_pred EEeccHHHHHHHHHHHHHHHHh--CCCCc--ccccccccc-CCCcc--cccCCCCCeeeccC
Confidence 3378999999999888888888 87543 455666652 23676 99999999998876
No 53
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=91.67 E-value=0.051 Score=55.14 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=40.9
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
+=+.|.||..|+...+.+.+.+ |..++ ..++.+++. ..+|+ |||||.||.|++.|
T Consensus 194 v~~gG~DQ~~~i~l~rdla~r~--n~~~~--~~l~~pll~-gldG~--KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 194 LCIGGSDQWGNITSGIDLTRRL--HQNQV--FGLTVPLIT-KADGT--KFGKTEGGAVWLDP 248 (322)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH--HCCCC--EEEECCCCB-CTTSC--BTTEETTEECBSST
T ss_pred EEecCchhHHHHHHHHHHHHHh--CCCCc--eeeccCccC-CCCcc--cccCCCCCeeeccC
Confidence 4567999999998888888888 76432 344445441 23676 99999999999876
No 54
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=90.64 E-value=0.13 Score=54.22 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=37.5
Q ss_pred eEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHH
Q psy5226 341 QAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRN 404 (582)
Q Consensus 341 ~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~d 404 (582)
..+-..|.||..|+.-.+.+.+.+ |++.+ ..++.+++. .-+|...|||||.|| .|+|.|
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~ll~-gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKL--KYSKP--ALLHSRFFP-ALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHH--TSCCC--EEEEECCCC-CTTC--------CGGGCCBTTC
T ss_pred ceEEEeccCcHHHHHHHHHHHHHh--CCCCc--eeecccccc-CCCCCccccCCCCCCCeEeccC
Confidence 344468999999998888888888 87655 446666653 236611299999999 798865
No 55
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=90.30 E-value=0.11 Score=54.66 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=41.4
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRN 404 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~d 404 (582)
+-+.|.||..|+..-+.+.+.+ |..++ ..++.+++. ..+|+ |||||.|| .|+++|
T Consensus 190 i~~gG~DQ~~ni~lgrdlarr~--~~~~~--~~l~~plL~-~ldG~--KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 190 LQIGGADQWGNIIAGVRLVRQK--LGATV--HALTVPLVT-AADGT--KFGKSTGGGSLWLDP 245 (432)
T ss_dssp EEEECSTTHHHHHHHHHHHHHH--HCCCC--EEEECCCCB-CTTSC--BTTBCSSSCBCBSST
T ss_pred EEeccHHHHHHHHHHHHHHHHh--CCCCc--ccccccccc-CCCcC--cCCCCCCCCeEEccC
Confidence 3378999999998888888888 76533 445555552 34786 99999999 898876
No 56
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=89.59 E-value=0.2 Score=52.78 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=42.5
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHHHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRNLIKW 408 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~dll~~ 408 (582)
.+|.||..|+...+.+.+.+ |++.+ ..++.+++.= -+|...|||||.|| .|+|.|==++
T Consensus 261 pvG~DQ~~~i~l~Rdla~r~--~~~~P--~~l~~pll~g-LdG~~~KMSKS~~nsaI~L~D~p~~ 320 (437)
T 1r6u_A 261 PCAIDQDPYFRMTRDVAPRI--GYPKP--ALLHSTFFPA-LQGAQTKMSASDPNSSIFLTDTAKQ 320 (437)
T ss_dssp EEEGGGHHHHHHHHHHGGGG--TCCCC--EEEEECCCEE-TTEEEEECCTTSSSSCCBTTCCHHH
T ss_pred EeehhhHHHHHHHHHHHHHh--CCCCc--eEeecccccC-CCCCccccCCCCCCCeeeccCCHHH
Confidence 47999999998888887888 87655 4466777632 36622399999999 7988654333
No 57
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=89.37 E-value=0.21 Score=53.33 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=42.8
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHHHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRNLIKW 408 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~dll~~ 408 (582)
.+|.||..|+...+.+.+.+ |++.+ ..++.+++.= -+|...|||||.|| .|+|.|==++
T Consensus 308 pvG~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~pll~g-LdG~~~KMSKS~~nsaI~L~d~p~~ 367 (477)
T 1r6t_A 308 PCAIDQDPYFRMTRDVAPRI--GYPKP--ALLHSTFFPA-LQGAQTKMSASDPNSSIFLTDTAKQ 367 (477)
T ss_dssp EEEGGGHHHHHHHHHHGGGG--TCCCC--EEEEECCCEE-TTEEEEECCTTSTTCCCBTTCCHHH
T ss_pred eccccHHHHHHHHHHHHHHh--CCCCc--eeeecccccC-CCCCccccCCCCCCCceeecCCHHH
Confidence 47999999998888888888 87655 4567777632 36622399999999 8988654333
No 58
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=89.35 E-value=0.15 Score=53.70 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=41.5
Q ss_pred EEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 344 NIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 344 ~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
-..|.||..|+..-+...+.+ |..++ ..++.+++. ..+|. .|||||.||.|+++|
T Consensus 191 ~~gG~DQ~~ni~l~rdlarr~--~~~~~--~~lt~pll~-gldG~-~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 191 EMGGTDQRFNLLVGREVQRAY--GQSPQ--VCFLMPLLV-GLDGR-EKMSKSLDNYIGLTE 245 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHT--TCCCC--EEEEECCCB-CTTSS-SBCCGGGTCCCBTTS
T ss_pred EEechHHHHHHHHHHHHHHHh--CCCCc--eEeeccccc-CCCCc-cccCcCCCCeeCCCC
Confidence 378999999998888888888 87554 455666652 23562 299999999998876
No 59
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=89.20 E-value=0.16 Score=52.85 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=33.2
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNL 405 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dl 405 (582)
+-..|.||..|+...+.+.+.+ |++.+ ...+.+++.- -+|...|||||.|+.|++.|=
T Consensus 227 lvp~G~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~~l~g-LdG~~~KMSKS~~~~I~L~D~ 284 (395)
T 3i05_A 227 LIPQAIDQDPYFRLTRDIAPRL--GYLKP--AVIHSKFFPG-LSGPKGKMSSSSGTAVLLTDT 284 (395)
T ss_dssp EEEEEGGGHHHHHHHHHTHHHH--TCCCC--EEEEECCCCC-C-------------CCBTTCC
T ss_pred EEEeccchHHHHHHHHHHHHHc--CCCCc--eeeccccccC-CCCCcccCCCCCCCcccCCCC
Confidence 4468999999998888888888 88655 4566676632 256223999999999987653
No 60
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=88.81 E-value=0.11 Score=54.03 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=32.9
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRNL 405 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~dl 405 (582)
+-..|.||..|+...+.+.+.+ |++.+ ...+.+++.- -+|...|||||.|| .|++.|=
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~~l~g-LdG~~~KMSKS~~nsaI~L~D~ 281 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRL--GYLKP--SSIHSIFLPS-LQGSQTKMSASVQNSSIFVNDN 281 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGG--TCCCC--EEEEECCCCC--------------CCCCBTTCC
T ss_pred ecccccchHHHHHHHHHHHHHc--CCCCc--eeeccCcccC-CCCCCcCCCCCCCCCeEeccCC
Confidence 3468999999998888888888 88655 4567777622 25621399999987 7877543
No 61
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=88.48 E-value=0.27 Score=51.28 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=42.4
Q ss_pred EEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC-CCcccHHH
Q psy5226 342 AINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS-GSYITIRN 404 (582)
Q Consensus 342 ~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~-G~~v~l~d 404 (582)
.+-.+|.||..|+.-.+.+++.+ |++.+ ..++.+++.- -+|...|||||. |+.|++.|
T Consensus 245 ~lvpvG~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~~l~g-LdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 245 CLVPAAVDQDPFFRLARDKAKAL--GEKKP--SSIYVSLLPD-LKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHH--TCCCC--EEEEECCCCC-TTSCCCCSSCSCGGGSCBTTC
T ss_pred eEEeeccchHHHHHHHHHHHHHc--CCCCc--eeeccCcccC-CCCCCcCCCCCCCCCcccCCC
Confidence 33458999999998888888888 98665 4556777632 366223999999 68898765
No 62
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=88.14 E-value=0.16 Score=52.81 Aligned_cols=59 Identities=12% Similarity=-0.010 Sum_probs=42.0
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHHHHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRNLIKW 408 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~dll~~ 408 (582)
.+|.||..|+.-.+.+.+.+ |+..+ ..++.+++.- -+|...|||||.+| .|.+.|=-++
T Consensus 212 pvG~DQ~~hl~l~Rdla~r~--n~~~p--~~l~~~~l~g-LdG~~~KMSKS~~ns~I~L~D~p~~ 271 (392)
T 3jxe_A 212 PAAIDQDPYWRLQRDFAESL--GYYKT--AALHSKFVPS-LTSLSGKMSASKPETAIYLTDSPED 271 (392)
T ss_dssp EEEGGGHHHHHHHHHHTGGG--TSCCC--EEEEECCCCC-SSCSSSCCCTTSGGGCCBTTCCHHH
T ss_pred ecccchHHHHHHHHHHHHHc--CCCCC--eeeecccccC-CCCCccccccCCCCCeeeCCCCHHH
Confidence 78999999998888888888 87654 4556666522 25522399999998 8877543333
No 63
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=85.86 E-value=0.29 Score=50.69 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=40.3
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccC-CCCcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKR-SGSYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr-~G~~v~l~d 404 (582)
.+|.||..|+.-.+.+.+.+ |++.+ .+++.+++.- -+|. .||||| .|+.|.+.|
T Consensus 229 pvG~DQ~~hl~l~Rdla~r~--n~~~p--~~l~~~~l~g-LdG~-~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 229 LDSIKNVQFHSIIDQIATTL--NFIQP--TVLFHKMVPL-LSGV-TKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEGGGHHHHHHHHHHHHHH--TCCCC--EEEEECCCCC-TTCT-TCCCCCCTTTSCBTTC
T ss_pred ccccchHHHHHHHHHHHHHc--CCCCc--eEeecCeeeC-CCCC-CccCcCCCCCeeecCC
Confidence 36999999998888888889 88655 4556666522 2552 299999 799998755
No 64
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=85.80 E-value=0.27 Score=51.18 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=37.9
Q ss_pred EEEEecCcchhHHHHHHHHHHHHcCC---------CC----CCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 343 INIQGDDHQGTITRVKAGLQAINIGI---------PN----DYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 343 i~V~g~dh~~~~~~~~~~l~~l~~G~---------~~----~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
+-++|.||..|+..-+.+.+.+..-+ .| .....++.+++. ..+|+ |||||.||.|+|+|
T Consensus 235 i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~-~ldG~--KMSKS~~naI~L~d 306 (392)
T 1y42_X 235 MQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLT-DSSGA--KFGKSAGNAIWLDP 306 (392)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCB-CTTCC--BTTBCSSSBCBSST
T ss_pred EEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCc-CCchh--hccCCCCCeeeccC
Confidence 44689999999877666655541001 01 112445566552 34776 99999999999876
No 65
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=85.14 E-value=0.44 Score=50.00 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=39.8
Q ss_pred EEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 342 AINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 342 ~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
.+-+.|.||..|+..-+...+.+. |..+ ...++.+++. ..+|+ |||||.||.|+++|
T Consensus 188 ~i~~gG~DQ~~ni~~grdla~r~~-~~~~--~~~l~~pll~-~ldG~--KMSKS~~naI~L~d 244 (420)
T 1jil_A 188 KIQVGGSDQWGNITSGIELMRRMY-GQTD--AYGLTIPLVT-KSDGK--KFGKSESGAVWLDA 244 (420)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHH-CCCC--CEEEEECCCB-CTTSC--BTTBCSSSBCBSST
T ss_pred cEEeccHHHHHHHHHHHHHHHHhc-CCCC--eeEeeccccc-CCccc--cccCCCCCeEecCC
Confidence 344689999999887777766550 2222 2455666652 34776 99999999998876
No 66
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=84.71 E-value=0.41 Score=50.20 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=39.1
Q ss_pred EEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHH
Q psy5226 342 AINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRN 404 (582)
Q Consensus 342 ~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~d 404 (582)
.+-+.|.||..|+..-+.+.+.+. |..+ ...++.+++. ..+|+ |||||.||.|+++|
T Consensus 187 ~i~~gG~DQ~~ni~lgrdlarr~~-~~~~--~~~lt~pll~-~ldG~--KMSKS~~naI~L~d 243 (419)
T 2ts1_A 187 RLQIGGSDQWGNITAGLELIRKTK-GEAR--AFGLTIPLVT-KADGT--KFGKTESGTIWLDK 243 (419)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHH-C--C--CEEEEECCCC-CTTSC--CTTCCSSCCCBSST
T ss_pred cEEeccHHHHHHHHHHHHHHHHhc-CCCC--eeeccccccc-CCCcc--cccCCCCCeEecCC
Confidence 344689999999887777766551 2222 2455666652 34786 99999999998876
No 67
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=81.10 E-value=0.4 Score=50.58 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=38.8
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCC-cccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS-YITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~-~v~l~d 404 (582)
.+|.||..|+...+.+...+ |++.+ .+.+..++. .-+|...|||||.|| .|.+.|
T Consensus 292 PvG~DQ~~hlel~Rdia~rf--n~~~p--~~~~~~~l~-gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRM--GHPKN--AYLLGKFLP-GLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTT--TSCCC--EEEEECCCC-BTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeecchHHHHHHHHHHHHHh--CCCCC--eeecCCccc-CCCCCCCccCCCCCCCeeeecC
Confidence 57999999998888888888 88655 455666652 124422399999997 676643
No 68
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=79.44 E-value=1.8 Score=44.73 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=30.8
Q ss_pred cEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 123 ~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
+++.| |++--|+|++|+||+-.+. .+.++.+..|..|.-+ ++|+.
T Consensus 81 ~~~~v-ysG~~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 81 KPTFI-FIQKYPQKEVALEEYITLE---FARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp CCEEE-EEEECCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEE--ECHHH
T ss_pred CCeEE-EeccCCCCCccHHHHHHHH---HHHHHHHhcCCeEEEE--eCchH
Confidence 34556 8999999999999965542 2333333458877755 88875
No 69
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=79.17 E-value=0.88 Score=46.09 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=28.0
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
||+--|+|.+||||+..++ --+.++ .. ||++ +..|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~l-Q~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVEL-QH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHHH-TT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-Hc-CCcE--EEEEeCc
Confidence 7899999999999998776 223333 33 8886 5778884
No 70
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=78.52 E-value=0.32 Score=49.36 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=35.6
Q ss_pred EEEecCcchhHHHHHHHHHHHHcC------CCCCCCcEEE---EEEEEEeeCC--eeeecccCCCC-c--ccHHHH
Q psy5226 344 NIQGDDHQGTITRVKAGLQAINIG------IPNDYPNYIL---HKMVTVIKNG--KEVKISKRSGS-Y--ITIRNL 405 (582)
Q Consensus 344 ~V~g~dh~~~~~~~~~~l~~l~~G------~~~~~~~~~~---~~~v~l~~~G--~~~KMSkr~G~-~--v~l~dl 405 (582)
-.+|.||..|+...+.+.+.+ | +..| ..++ .+++ ..-+| + |||||.|| . |++.|=
T Consensus 141 vpvG~DQ~~~iel~Rdia~r~--n~~yg~~f~~P--~~li~~~~~~l-~gl~G~~~--KMSKS~~n~~~~I~L~d~ 209 (328)
T 1i6k_A 141 VPVGEDQKQHIELTRDLAERF--NKRYGELFTIP--EARIPKVGARI-MSLVDPTK--KMSKSDPNPKAYITLLDD 209 (328)
T ss_dssp EECCGGGHHHHHHHHHHHHHH--HHHHCSCCCCC--EEECCSSSSSC-BCSSCTTS--BCCTTCSCGGGCCBTTCC
T ss_pred EecccchHHHHHHHHHHHHHh--CcccccccCCC--eeeeccccccc-cCCCCCcc--CCCCCCCCcCceeeecCC
Confidence 378999999998877777776 4 2222 2222 2333 12355 5 99999999 6 877553
No 71
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=73.27 E-value=0.81 Score=47.26 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=37.7
Q ss_pred EEecCcchhHHHHHHHHHHHHcCC--------CCCCCcEEEEEEEEEeeCCe----------------eeecccCC-CCc
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGI--------PNDYPNYILHKMVTVIKNGK----------------EVKISKRS-GSY 399 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~--------~~~~~~~~~~~~v~l~~~G~----------------~~KMSkr~-G~~ 399 (582)
.+|.||..|+...+.+.+.+ |. ... ....+.+++.= -+|- ..|||||. |+.
T Consensus 185 p~G~DQ~~~i~l~rdla~r~--n~~~~~~~g~~~~-~~~~~~~~l~g-L~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~ 260 (375)
T 2cyc_A 185 HAGMDQRKAHVIAIEVAQKL--RYHPIVHEGEKLK-PVAVHHHLLLG-LQEPPKWPIESEEEFKEIKAQMKMSKSKPYSA 260 (375)
T ss_dssp EEEGGGHHHHHHHHHHGGGC--SSSCEEETTEEEC-CEEEEECCCBC-SSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGS
T ss_pred cccchHHHHHHHHHHHHHHh--CCcccccccccCc-cEEeccccccC-CCCcccccccchhhhhhhhhhhcccCCCCCCe
Confidence 68999999998888777777 76 101 13455555522 2440 13999998 788
Q ss_pred ccHHHH
Q psy5226 400 ITIRNL 405 (582)
Q Consensus 400 v~l~dl 405 (582)
|++.|=
T Consensus 261 I~L~d~ 266 (375)
T 2cyc_A 261 VFIHDS 266 (375)
T ss_dssp CBTTCC
T ss_pred eccCCC
Confidence 887653
No 72
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=73.13 E-value=2.4 Score=43.32 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=28.9
Q ss_pred EEEEEecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 125 ILIEFVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 125 v~Ve~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
..| ||+--|+|+ |||||+- ++. .+.++. ..||++ +..|+||=
T Consensus 47 ~~v-y~G~~PTg~sLHLGhl~-~l~--~~~~lQ-~~G~~~--~~lIaD~h 89 (356)
T 2pid_A 47 QTI-YCGFDPTADSLHVGHLL-ALL--GLFHLQ-RAGHNV--IALVGGAT 89 (356)
T ss_dssp CEE-EEEECCSSSSCBHHHHH-HHH--HHHHHH-HTTCEE--EEEECTTG
T ss_pred CEE-EEeecCCCCcccHHHHH-HHH--HHHHHH-HCCCcE--EEEEccce
Confidence 445 899999998 9999954 333 244444 469876 46778854
No 73
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=72.08 E-value=2.5 Score=43.84 Aligned_cols=39 Identities=31% Similarity=0.531 Sum_probs=28.1
Q ss_pred EecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 129 FVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 129 ~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
||+--|+|+ |||||+- .+. .+.++. ..||+++ ..|+||=
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~--~l~~lQ-~~G~~~~--~lIgD~h 107 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLM--PLFWMY-LEGYKAF--TLIGGST 107 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHH--HHHHHH-HHTCEEE--EEECTTT
T ss_pred EEeecCCCCCccHHHHH-HHH--HHHHHH-HcCCcEE--EEEcCce
Confidence 899999999 9999976 332 344544 4599864 6677753
No 74
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=71.34 E-value=3 Score=43.56 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=28.2
Q ss_pred EecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchh
Q psy5226 129 FVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGV 174 (582)
Q Consensus 129 ~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~ 174 (582)
||+--|+++ |||||+- .+ -.+.++ ...||+++ ..|+||=.
T Consensus 34 y~G~dPTg~sLHlGh~v-~l--~~l~~l-Q~~G~~~i--~lIgd~ta 74 (419)
T 2ts1_A 34 YCGFDPTADSLHIGHLA-TI--LTMRRF-QQAGHRPI--ALVGGATG 74 (419)
T ss_dssp EEEECCSSSSCBGGGHH-HH--HHHHHH-HHTTCEEE--EEECTTGG
T ss_pred EEeeCCCCCCccHHHHH-HH--HHHHHH-HHCCCcEE--EEEcCcee
Confidence 899999999 9999966 22 234444 45699864 67777643
No 75
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=70.74 E-value=2.6 Score=42.48 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=27.8
Q ss_pred EecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 129 FVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 129 ~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
||+--|+|+ +||||+- .+. .+.+ |...||++ +..|+||=
T Consensus 37 y~G~~PTg~slHlGh~l-~l~--~~~~-lQ~~g~~~--~~~i~D~~ 76 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PLL--CLKR-FQQAGHKP--VALVGGAT 76 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--HHHH-HHHTTCEE--EEEECTTG
T ss_pred EEeecCCCCcccHHHHH-HHH--HHHH-HHHcCCcE--EEEEccce
Confidence 899999999 9999966 222 2333 44569886 56788864
No 76
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=68.33 E-value=3.3 Score=43.36 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=27.8
Q ss_pred EecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 129 FVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 129 ~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
||+--|+++ |||||+- .+ -.+.++ ...||+++ ..|+||=
T Consensus 36 y~G~dPTg~sLHlGh~v-~l--~~~~~l-Q~~G~~~~--~lIgd~t 75 (420)
T 1jil_A 36 YCGADPTADSLHIGHLL-PF--LTLRRF-QEHGHRPI--VLIGGGT 75 (420)
T ss_dssp EEEECCSSSSCBHHHHH-HH--HHHHHH-HHTTCEEE--EEECTTG
T ss_pred EEeeCCCCCCccHHHHH-HH--HHHHHH-HHCCCcEE--EEEcCce
Confidence 899999999 9999966 22 234444 45699864 6677764
No 77
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=67.51 E-value=3.3 Score=42.89 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCCCccchhhhhHHHHHHHHHHHH-cCCeeEEEEeecCc
Q psy5226 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFIS-QGYKVTREFYYNDT 172 (582)
Q Consensus 125 v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~-~G~~V~~~~~i~D~ 172 (582)
+.| |++--|+|.+|+||+-.++ +.|.|.. .|++|+ ..|+||
T Consensus 74 ~~i-~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~--i~IaD~ 115 (392)
T 3jxe_A 74 FFL-YTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLY--IQITDD 115 (392)
T ss_dssp CEE-EEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEE--EEECHH
T ss_pred eEE-EeccCCCCchhHHHHHHHH----HHHHHHHhcCCceE--EEecch
Confidence 445 7899999999999986553 2344544 798776 457775
No 78
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=66.72 E-value=5.1 Score=41.49 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=29.0
Q ss_pred cEEEEEEecCCCCC-CCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 123 KKILIEFVSANPTG-PLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 123 ~~v~Ve~sspN~~k-~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
+++.| ||+--|+| .||+||+=.+ ..+.++.+..|..|.-+ |+||
T Consensus 77 ~~~~v-y~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 77 QPFYL-YTGRGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp CCEEE-EEEECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEE--ECHH
T ss_pred CCeEE-EEeecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEE--Ecch
Confidence 34556 89999999 6999997433 23444444447766643 7775
No 79
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=65.83 E-value=4.1 Score=42.70 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=29.3
Q ss_pred EEEEEecCCCC-CCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 125 ILIEFVSANPT-GPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 125 v~Ve~sspN~~-k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
+.| ||+--|+ |.|||||+-..+. +.++.+..|++|+ ..|+||
T Consensus 103 ~~v-y~G~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i--~lI~D~ 145 (432)
T 2ip1_A 103 FFL-YTGRGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLV--IELTDD 145 (432)
T ss_dssp CEE-EEEECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEE--EEECHH
T ss_pred eEE-EEeecCCCCCccHHHHHHHHH---HHHHHHHcCCeEE--EEEecc
Confidence 445 8999999 8999999875442 3444444798764 567775
No 80
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=65.65 E-value=0.93 Score=46.90 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=25.9
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
|++--|+|++|+||.-.++- -... |. .||+| ...|.||
T Consensus 39 ~sG~~PTG~lHLGhyvGal~--~~~~-LQ-~~~~~--~~~IaD~ 76 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK--QFVE-LQ-HDYNS--YFCIVDQ 76 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH--HHHH-TT-TTSEE--EEEECHH
T ss_pred EEeeCCCCcchHHHHHHHHH--HHHH-HH-ccCcE--EEEEecc
Confidence 79999999999999765542 1122 22 28876 4677774
No 81
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=65.42 E-value=5 Score=42.08 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=29.3
Q ss_pred EEEEEecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHH
Q psy5226 125 ILIEFVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQI 176 (582)
Q Consensus 125 v~Ve~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~ 176 (582)
+.| ||+--|+|+ +||||+- .+ -.+.++. ..||+| +..|+||=..+
T Consensus 38 ~~v-y~G~dPTg~sLHlGh~v-~l--~~l~~lQ-~~G~~~--i~lIgD~ta~i 83 (432)
T 1h3f_A 38 LTV-KLGADPTRPDLHLGHAV-VL--RKMRQFQ-ELGHKV--VLIIGDFTGMI 83 (432)
T ss_dssp CEE-EEEECTTCCSCBHHHHH-HH--HHHHHHH-HTTCEE--EEEECCCC---
T ss_pred cEE-EEcccCCCCCCchhhHH-HH--HHHHHHH-HCCCCE--EEEEccceEEe
Confidence 344 899999997 9999976 22 2344444 469986 56788875433
No 82
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=63.78 E-value=4.9 Score=42.07 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=28.8
Q ss_pred EecCCCCCC-CccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHH
Q psy5226 129 FVSANPTGP-LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQI 176 (582)
Q Consensus 129 ~sspN~~k~-lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~ 176 (582)
||+--|+|+ |||||+- .+. .+.++. ..||+++ ..|+||=..+
T Consensus 36 y~G~dPTg~sLHLGhlv-~l~--~l~~lQ-~~G~~~i--~lIgD~ta~i 78 (432)
T 2jan_A 36 YAGFDPTAPSLHAGHLV-PLL--TLRRFQ-RAGHRPI--VLAGGATGMI 78 (432)
T ss_dssp EEEECCSSSSCBGGGHH-HHH--HHHHHH-HTTCEEE--EEECHHHHHH
T ss_pred EEeeCCCCCCcCHHHHH-HHH--HHHHHH-HCCCcEE--EEEcCcEEEc
Confidence 899999997 9999954 222 344444 4699864 6678864433
No 83
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=63.29 E-value=5.2 Score=41.37 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=29.3
Q ss_pred EEEEEecCCCC-CCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchh
Q psy5226 125 ILIEFVSANPT-GPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGV 174 (582)
Q Consensus 125 v~Ve~sspN~~-k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~ 174 (582)
+.| ||+--|+ +.+|+||+-.++ .+.++.+.-|..|.- -|+||+.
T Consensus 75 ~~v-y~G~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 75 FYL-YTGRGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp CEE-EEEECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEE--EECHHHH
T ss_pred eEE-EeCCCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEe--eccChHH
Confidence 445 8999999 689999964443 344444444666543 7899863
No 84
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=60.07 E-value=7.5 Score=40.85 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=29.6
Q ss_pred cEEEEEEecCCCC-CCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCch
Q psy5226 123 KKILIEFVSANPT-GPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTG 173 (582)
Q Consensus 123 ~~v~Ve~sspN~~-k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G 173 (582)
+++.| ||+--|+ |.|||||+-.++ .+.++.+.-|..|.- -|+||.
T Consensus 90 ~p~~v-ytG~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 90 HPIYI-YTGRGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEE--EECHHH
T ss_pred CCeEE-EecCCCCCCCccHHHHHHHH---HHHHHHHccCceEEE--EeeCcH
Confidence 34556 8999999 889999954332 234433333666654 588975
No 85
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=57.52 E-value=11 Score=40.14 Aligned_cols=45 Identities=13% Similarity=0.286 Sum_probs=31.5
Q ss_pred cEEEEEEecCCCC-CCCccchhhhhHHHHHHHHHHHH-cCCeeEEEEeecCchh
Q psy5226 123 KKILIEFVSANPT-GPLHIGHGRQCAIGDILSSLFIS-QGYKVTREFYYNDTGV 174 (582)
Q Consensus 123 ~~v~Ve~sspN~~-k~lHiGHlRs~iiGd~laril~~-~G~~V~~~~~i~D~G~ 174 (582)
+++.| ||+--|+ |.|||||+-..+. .|.|.. .|++|+ ..|+||=.
T Consensus 154 ~~~~v-y~G~dPTag~LHLGh~v~~~~----~~~lQ~~~g~~~i--ilI~D~~a 200 (477)
T 1r6t_A 154 KPFYL-YTGRGPSSEAMHVGHLIPFIF----TKWLQDVFNVPLV--IQMTDDEK 200 (477)
T ss_dssp CCEEE-EEEECCCTTCCBGGGHHHHHH----HHHHHHHHTCCEE--EEECHHHH
T ss_pred CCcEE-EEcccCCCCCccHHHHHHHHH----HHHHHHHhCCcEE--EEEeccee
Confidence 34556 8999999 8999999876542 334554 898865 56777543
No 86
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=55.76 E-value=11 Score=39.58 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=32.4
Q ss_pred cEEEEEEecCCCC-CCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHH
Q psy5226 123 KKILIEFVSANPT-GPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQI 176 (582)
Q Consensus 123 ~~v~Ve~sspN~~-k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~ 176 (582)
+++.| ||+--|+ |.|||||+-..+. +.++.+..|++|+ ..|+||=..+
T Consensus 107 ~~~~v-y~G~dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~i--ilIgD~ta~i 155 (437)
T 1r6u_A 107 KPFYL-YTGRGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLV--IQMTDDEKYL 155 (437)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHHHH---HHHHHHHHTCCEE--EEECHHHHHH
T ss_pred CCcEE-EEcccCCCCCccHHHHHHHHH---HHHHHHHhCCcEE--EEEecceeee
Confidence 34556 8999999 8999999875442 3343333898864 5678854433
No 87
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=54.63 E-value=6.4 Score=40.47 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=26.2
Q ss_pred EecCCCCCCCccch-hhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGH-GRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGH-lRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
||+--|+|.+|+|| +-. + -.+.++. ..||+++ ..|+||
T Consensus 37 y~G~~PTg~lHlG~yl~~-l--~~~~~lQ-~~G~~~~--~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMA-G--AKIADFQ-KAGIKTR--VFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHH-H--HHHHHHH-HTTCBCE--EEECHH
T ss_pred EeCCCCCCCcCchHHHHH-H--HHHHHHH-HCCCcEE--EEecCc
Confidence 78999999999999 542 2 2233444 4698764 677774
No 88
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=52.85 E-value=5.1 Score=40.62 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=27.2
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~ 172 (582)
|++--|+|++|+||.-.++ .-+.++.+ ||++ +..|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~~--~~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQMQD--DYDC--QYCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHHHH--HSEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHHHh--cCeE--EEEEecc
Confidence 7899999999999987665 22334444 5765 4678885
No 89
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=50.51 E-value=6.3 Score=40.64 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=33.7
Q ss_pred EEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEE-----EE--eeCC-eeeecccCC---CCcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMV-----TV--IKNG-KEVKISKRS---GSYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v-----~l--~~~G-~~~KMSkr~---G~~v~l~d 404 (582)
.+|.||..|+...+.+.+.+ |......-.++-+++ .+ ..+| + |||||. ||.|.+.|
T Consensus 176 PvG~DQ~~hleltRdia~rf--n~~y~~~f~~p~~li~~~~~~l~gL~dg~~--KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 176 PPGEDQKQHLELTRNLAERF--NKKYNDIFTIPEVKIPKVGARIMSLNDPLK--KMSKSDPNQKAYITLLD 242 (388)
T ss_dssp CCCSSCHHHHHHHHHHHHHH--HHHTCSCCCCCEECCCSCCCCCBCSSCTTS--BCCTTCSSTTSCCBTTC
T ss_pred EechhHHHHHHHHHHHHHHh--CcccCCCcccchhhhcccccccccCCCCCC--ccCCCCCCCCCeeecCC
Confidence 68999999998888888777 532100001111111 01 1133 4 999999 89998754
No 90
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=50.50 E-value=14 Score=38.26 Aligned_cols=43 Identities=16% Similarity=0.403 Sum_probs=28.5
Q ss_pred cEEEEEEecCCCCC-CCccchhhhhHHHHHHHHHHHHc-CCeeEEEEeecCc
Q psy5226 123 KKILIEFVSANPTG-PLHIGHGRQCAIGDILSSLFISQ-GYKVTREFYYNDT 172 (582)
Q Consensus 123 ~~v~Ve~sspN~~k-~lHiGHlRs~iiGd~laril~~~-G~~V~~~~~i~D~ 172 (582)
+++.| |++--|+| .+|+||+-.+ .+.|.|... |..|.- -|+||
T Consensus 100 ~p~~v-y~G~~PTg~~lHLGh~v~~----~~~~~lQ~~~g~~~~i--~IaD~ 144 (406)
T 3tze_A 100 RPFYL-YTGRGPSSKTMHIGHTIPF----LLCKYMQDAFKIRLVI--QITDD 144 (406)
T ss_dssp CCEEE-EEEECCCSSCCBGGGHHHH----HHHHHHHHHHTCCEEE--EECHH
T ss_pred CCeEE-EEeeCCCCCcccHHHHHHH----HHHHHHHHhcCCcEEE--EeeCh
Confidence 34556 89999998 7999995443 233335444 877654 46775
No 91
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=47.89 E-value=2.4 Score=43.17 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=33.1
Q ss_pred EEecCcchhHHHHHHHHHHHHcC--CCC--CCCcEEEE---EEEEEeeCCeeeecccCCC---CcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIG--IPN--DYPNYILH---KMVTVIKNGKEVKISKRSG---SYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G--~~~--~~~~~~~~---~~v~l~~~G~~~KMSkr~G---~~v~l~d 404 (582)
.+|.||..|+...+.++..+ | |.. +....+.. .++.=..||. .|||||.+ +.|.+.|
T Consensus 157 pvG~DQ~~hleltRdia~rf--n~~yg~~f~~p~~li~~~~~~l~gL~dg~-~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 157 PVGEDQKQHLELSRDIASRF--NNLYGDIFKIPEPFIPKAGARVMSLQDPT-KKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp CCCGGGHHHHHHHHHHHHHH--HHHHSSCSCCCEECCCCCCCCCBCSSCTT-SBCCTTCSCGGGCCBTTS
T ss_pred EeccchHHHHHHHHHHHHHh--ccccCCcccccchhccCCcccCccCCCCc-cccCCCCCCCCceecCCC
Confidence 68999999998888887777 5 211 10011111 1221112452 29999997 6787754
No 92
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=44.08 E-value=3.4 Score=41.97 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=33.2
Q ss_pred EEecCcchhHHHHHHHHHHHHcC--CC----C-CCCc-EEE--EEEEEEeeCCeeeecccCC---CCcccHHH
Q psy5226 345 IQGDDHQGTITRVKAGLQAINIG--IP----N-DYPN-YIL--HKMVTVIKNGKEVKISKRS---GSYITIRN 404 (582)
Q Consensus 345 V~g~dh~~~~~~~~~~l~~l~~G--~~----~-~~~~-~~~--~~~v~l~~~G~~~KMSkr~---G~~v~l~d 404 (582)
.+|.||..|+.-.+.+.+.+ | |. . +... +++ ..++.=..||. .|||||. ||.|.+.|
T Consensus 148 pvG~DQ~~hlel~Rdia~rf--n~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~-~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 148 PVGSDQKQHLELARDIATRF--NNIYSPEQPIFTIPEPYIPTVNARVMSLQDAT-KKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp CCCGGGHHHHHHHHHHHHHH--HHHHCSSSCSSCCCEECCCSCCCCCEETTEEE-EECCTTCSCGGGCCBTTC
T ss_pred EeccchHHHHHHHHHHHHHh--chhccCCCcccccChhhhccCcccccCCCCCC-CccCCCCCCCCCeeecCC
Confidence 68999999998777777776 4 21 1 0001 111 12221112341 3999999 78997754
No 93
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=42.38 E-value=8.7 Score=38.96 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=25.2
Q ss_pred EecCCCCCCCccchhhhhHHHHHHHHHHHH-cCCeeEEEEeecCc
Q psy5226 129 FVSANPTGPLHIGHGRQCAIGDILSSLFIS-QGYKVTREFYYNDT 172 (582)
Q Consensus 129 ~sspN~~k~lHiGHlRs~iiGd~laril~~-~G~~V~~~~~i~D~ 172 (582)
|++--|+|++|+||.-.++ .++.+. .++++ ...|.||
T Consensus 19 ~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~--~~~iaD~ 56 (346)
T 3n9i_A 19 FSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDC--IYCIVDL 56 (346)
T ss_dssp EEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEE--EEEECHH
T ss_pred EECcCCCCcccHHHHHHHH-----HHHHHHHhhCcE--EEEEecc
Confidence 7899999999999976553 333221 25664 5678885
No 94
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=30.70 E-value=15 Score=30.25 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226 559 LIYSIGQVLNNGLKLIGISAPTKM 582 (582)
Q Consensus 559 L~~a~~~vL~~~L~lLGi~~~e~M 582 (582)
+....-+-|+-.|.=|||++||.|
T Consensus 81 iY~~~lqElkPtl~ELGI~t~EeL 104 (109)
T 1v54_E 81 IYPYVIQELRPTLNELGISTPEEL 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTT
T ss_pred hHHHHHHHHhhHHHHhCCCCHHHh
Confidence 455566777777888999999976
No 95
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=28.96 E-value=57 Score=25.62 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCcee----EEcCCCCCCccccchhHHHHHHhcC------CCHHHHHHHHHHH
Q psy5226 3 LEEKQRIIKLFNLALKPLLIKTNIVPTII----LEYPRHASHGDISCNISMQISKKLQ------INSYKLAKIIAKN 69 (582)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~gd~~~~~a~~lak~~~------~~p~~ia~~l~~~ 69 (582)
+.+++.|+++|..+++.+--..+...++. --.+..-+.||.+.. |+.+.|.++ +++.++|..|.++
T Consensus 6 m~~~~ei~~qi~~a~~~a~FPI~s~~EL~~AlP~G~~t~c~~Gd~~~t-a~El~kll~~~DFP~ksA~~lAd~iv~r 81 (84)
T 1iio_A 6 MGVKEDIRGQIIGALAGADFPINSPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp CSHHHHHHHHHHHHHTTSSSTTBHHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCCCCCCCHHHHHHhCCCCCCCceeeCCEeee-HHHHHhhCCcccCCCCCHHHHHHHHHHH
Confidence 45778888888888876521110000000 001233345999876 788888776 5778888887765
No 96
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=28.75 E-value=40 Score=32.96 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCCccchhh---hhHHHHHHHHHHHHc-CCeeEEEEeecCchhHH
Q psy5226 136 GPLHIGHGR---QCAIGDILSSLFISQ-GYKVTREFYYNDTGVQI 176 (582)
Q Consensus 136 k~lHiGHlR---s~iiGd~laril~~~-G~~V~~~~~i~D~G~q~ 176 (582)
+++.||..- +.++++.++.+|+.. ||+|.....+|+....+
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~~~ 56 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQ 56 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHHHH
Confidence 556666654 689999999999998 99999998888755433
No 97
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=25.95 E-value=40 Score=19.85 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy5226 524 YVAFYLRDLAKELHGYYN 541 (582)
Q Consensus 524 ~l~~yl~~La~~~n~fy~ 541 (582)
.+++.|-.+...||.+|.
T Consensus 7 ~iAqELRRIGDeFN~~y~ 24 (26)
T 2wh6_B 7 WIAQELRRIGDEFNAYYA 24 (26)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhHHHhhhcc
Confidence 356788899999999884
No 98
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=25.92 E-value=52 Score=20.56 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhc
Q psy5226 525 VAFYLRDLAKELHGYYNT 542 (582)
Q Consensus 525 l~~yl~~La~~~n~fy~~ 542 (582)
+++.|-.+...||.||-.
T Consensus 8 IAQELRRIGDeFNa~ypR 25 (33)
T 1pq1_B 8 IAQELRRIGDEFNETYTR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhcccch
Confidence 678889999999998853
No 99
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=21.49 E-value=1.7e+02 Score=25.89 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=28.1
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEee
Q psy5226 135 TGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYY 169 (582)
Q Consensus 135 ~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i 169 (582)
+..++||++-..+--+-|..++...|..|..+..+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 44588999998888899999999999777766653
No 100
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=21.33 E-value=2.4e+02 Score=25.78 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=28.9
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeec
Q psy5226 135 TGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYN 170 (582)
Q Consensus 135 ~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~ 170 (582)
+..++||++-..+--+-|..++...|.+|..+..+-
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 345889999888888899999999998887776533
No 101
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=21.27 E-value=91 Score=26.45 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=47.9
Q ss_pred EEEEEeCchHHHHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEE
Q psy5226 90 FINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTR 165 (582)
Q Consensus 90 fiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~ 165 (582)
=|.+.+...-+.+++..+.+. .|.++++ +|.+.|..-+ ++++.-+-+++.-+|+..|+.+..
T Consensus 33 ~isLnf~da~i~~vl~~la~~----------tg~NiV~---d~~V~G~VTl-~l~~v~~~~al~~iL~~~gl~~~~ 94 (128)
T 4ar0_A 33 KISLDFQDVEIRTILQILAKE----------SGMNIVA---SDSVNGKMTL-SLKDVPWDQALDLVMQARNLDMRQ 94 (128)
T ss_dssp EEEEEEEEEEHHHHHHHHHHT----------TCCEEEE---CTTCCCEEEE-EEEEEEHHHHHHHHHHHHTEEEEE
T ss_pred ceEEEEeCCCHHHHHHHHHHH----------HCCcEEE---cCCCCceeeE-eecCCCHHHHHHHHHHHcCceEEE
Confidence 367777777788888766542 3456666 6888888776 688888999999999999998764
Done!