RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5226
(582 letters)
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 495 bits (1278), Expect = e-171
Identities = 206/580 (35%), Positives = 313/580 (53%), Gaps = 81/580 (13%)
Query: 6 KQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKI 65
K+ + + AL+ + +P +++E P+ HGD + N++MQ++KKL+ N ++A+
Sbjct: 6 KELLAEALAAALEAGGLPE--LPAVLIERPKDPEHGDYATNVAMQLAKKLKKNPREIAEE 63
Query: 66 IAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKI 125
I + I+ +EI PGFIN + + +++ IL +G ++G+S+IG KK+
Sbjct: 64 IVEA----------IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKV 113
Query: 126 LIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQA 185
++E+VSANPTGPLH+GH R IGD L+ + GY VTRE+Y ND G QI L S++
Sbjct: 114 VVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLEL 173
Query: 186 -RAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIR-D 243
KA+ D S++ I DL +
Sbjct: 174 LWRKAV---------------------------------DISLDEIK----EDLDRLGVH 196
Query: 244 FSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYY-KDGALWLR 302
F V + E LY GKV V + L + G Y DGALW+R
Sbjct: 197 FDVWFSESE--------------------LYYNGKVDEVVEDLKEKGLLYVESDGALWVR 236
Query: 303 TTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQ 362
T++GDDKDRV+ KS+G +TYF DIAYH++K+ER F + I + G DH G R+KA L+
Sbjct: 237 LTEFGDDKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAALK 295
Query: 363 AINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFR 422
A +G D +LH+MV +++ G+ VK+S R+G+ +T+ +L+ + ++ E
Sbjct: 296 A--LGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDE-AVGRARELIEEKE 352
Query: 423 EDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDK 482
G D +R+F +SR D D FD+DLAL NP Y+QYAHARI S+L +
Sbjct: 353 IAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPP-YVQYAHARICSILRKAAEAG 411
Query: 483 KSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNT 542
L L+ L E+E L+ KL+ +PEV+ ++ ++L PH +A YL +LA H +YN
Sbjct: 412 IDL----LLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNR 467
Query: 543 ERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
+ + ++ ARLAL+ + QVL NGL L+GISAP +M
Sbjct: 468 VLLKDEEEELRNARLALVKATAQVLKNGLDLLGISAPERM 507
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 490 bits (1264), Expect = e-168
Identities = 214/589 (36%), Positives = 325/589 (55%), Gaps = 27/589 (4%)
Query: 6 KQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKI 65
KQ + + AL + I++E P+ HGD + NI+ Q++KKL N ++A+
Sbjct: 4 KQLLKEKIAEALSAAGLDVEE-IEILVEPPKDPEHGDFATNIAFQLAKKLGKNPREIAEE 62
Query: 66 IAKNLIQQKNYIKLIQSIEIIKPGFINLKIS-SSIKQKIIKYILSSGIKFGQSNIGSNKK 124
IA+ L + +I+ +EI PGFIN +S + + +++ + ++G+S +G KK
Sbjct: 63 IAEKLDTDE----IIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKK 118
Query: 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQ 184
++IE+ SANPTGPLHIGH R IGD L+ + GY VTRE Y ND G QI LALS +
Sbjct: 119 VVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYE 178
Query: 185 ARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINII---ANGKINDLKAI 241
R + LG + PD Y GEY IAK L++ ++ + + +G + +
Sbjct: 179 KRGRE-ALGLTPEPD-GYLGEYYVKIAKD-LEEDPGNDEEEAREEVEKLESGD--EEAEL 233
Query: 242 RDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGAL-- 299
V L GVKFD Y E + GKV V + L + G Y DGAL
Sbjct: 234 WRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVV 293
Query: 300 -WLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVK 358
L+ +GDDKDRV++KS+G + YF DIAYH++K+ERGF + I + G D G ++K
Sbjct: 294 DLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQLK 353
Query: 359 AGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWL-SKTESKND 417
A L+ + G + +LH+ V +++ G+ VK+S R+G+ +T+ +L+ + + +
Sbjct: 354 AVLELLGYGPDKE---VLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEME 410
Query: 418 SIEFREDLIR---GRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSL 474
E + + I G D +R+ +SR D D++FD D AL N Y+QYAHARI S+
Sbjct: 411 EKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFE-GNTAPYVQYAHARICSI 469
Query: 475 LNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAK 534
L + G D+ L S + + L +E L+ KL +PEVL + ++L PH +A YL DLA
Sbjct: 470 LRKAGEDELDL-STEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAG 528
Query: 535 ELHGYYNTERIL-VKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
+ +YN +L +N ++ ARLAL+ + QVL NGL L+GI AP +M
Sbjct: 529 SFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAPERM 577
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 342 bits (880), Expect = e-111
Identities = 190/586 (32%), Positives = 282/586 (48%), Gaps = 32/586 (5%)
Query: 9 IIKLFNLALKPLLIKTNIV--PTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKII 66
I L + L+K + I+LE + GD + NI+ ++K L+ N +A+ I
Sbjct: 1 IKTLLKDEISAALLKAGLSKESEILLEETPNPEFGDYASNIAFPLAKVLKKNPRAIAEEI 60
Query: 67 AKNLIQQKNYIKLIQSIEIIKPGFINLKIS-SSIKQKIIKYILSSGIKFGQSNIGSNKKI 125
L + I+ + FIN +S + +++I+ IL+ +G + NKKI
Sbjct: 61 VLKL-KTGEIIEKV----EAAGPFINFFLSPQKLLERLIQKILTQKEDYGSKKL-KNKKI 114
Query: 126 LIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQA 185
+IEF SANP GPLHIGH R IGD L+ + GY V RE+Y ND G Q LAL V+
Sbjct: 115 IIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEK 174
Query: 186 RAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRS-INIIANGKINDLKAIRDF 244
PD G Y+ +I K + +++ + R + +G +K +
Sbjct: 175 FGNEKLNEAVKKPDHGLEGFYV-EINKRLEENEELEEEARELFVKLESGDEEAIKLWKRL 233
Query: 245 SVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTT 304
V Y L + FD++ E K G V V + L + G +DGALWL T
Sbjct: 234 -VEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGL-VVEDGALWLDLT 291
Query: 305 DYGDD-KDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQA 363
+GD KDRV++KS+G + Y DIAYH+ K ERGF + I + G DH I + A L+
Sbjct: 292 LFGDKDKDRVLQKSDGTYLYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEK 351
Query: 364 INIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSK------TESKND 417
+ + + MV + R G+ I++ NL+ SK T +
Sbjct: 352 LGFYKKKELIHLN-FGMV------PLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDL 404
Query: 418 SIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQ 477
E D + G +R+F +S+ +T ++FD D L + N YIQYAHARI S+L +
Sbjct: 405 EEEDVADAV-GIGAVRYFDLSQNRETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRK 462
Query: 478 WGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELH 537
D I D SL EKE LL L +P+VL + ++L PH + YL +LA
Sbjct: 463 --ADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFS 520
Query: 538 GYYNTERIL-VKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
+Y +L +N + ARLAL+ + Q L NGL+L+GI P +M
Sbjct: 521 SFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEPPERM 566
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 203 bits (518), Expect = 6e-62
Identities = 95/274 (34%), Positives = 130/274 (47%), Gaps = 62/274 (22%)
Query: 124 KILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSV 183
KIL+EFVSANPTGPLH+GH R IGD L+ + GY VTRE+Y ND G QI L LS+
Sbjct: 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL 60
Query: 184 QARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRD 243
+ K K + +++
Sbjct: 61 EKWRKL-----------------------VEESIKADLETYGRLDVR------------- 84
Query: 244 FSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRT 303
FD + ESS G + V +LL + G Y +DGALWL
Sbjct: 85 --------------------FDVWFGESSYL--GLMGKVVELLEELGLLYEEDGALWLDL 122
Query: 304 TDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQA 363
T++GDDKDRV+ +S+G +TYF DIAYH+ K+ERG + I + G DH G R+ A L+
Sbjct: 123 TEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALEL 182
Query: 364 INIGIPNDYPNYILHKMVTVIKNGKEVKISKRSG 397
+ ++L+ MV + KE K+S R+G
Sbjct: 183 LGYDEAKK-LEHLLYGMVNLP---KEGKMSTRAG 212
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 201 bits (512), Expect = 2e-59
Identities = 113/360 (31%), Positives = 155/360 (43%), Gaps = 38/360 (10%)
Query: 107 ILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTRE 166
IL+ G S + NKK+++EF S NP P+H+GH R IGD LS L GY V RE
Sbjct: 5 ILAQGGL--GSALLENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRE 62
Query: 167 FYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTA--YNGEYITDIAKCFLKK------K 218
Y D G Q L S++A AK D Y G IA+ K
Sbjct: 63 NYVGDWGTQFGMLIASLEAAAKEELTVPMPIQDLEDGYRGIKKDYIAEEIFAKEARNAVV 122
Query: 219 KIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGK 278
+ S D + I D I+ L FD E G+
Sbjct: 123 LLQSGDEEFREMWVLLIFDH--IKQ------------SLNKIYDDFDVTLHEGESVYKGR 168
Query: 279 VSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFK-WER 337
++ K L +G Y DGALWL T++GDDKDRVV KS+G Y +D+AY + +R
Sbjct: 169 MNDAVKDLKDNGLVYENDGALWLFLTEFGDDKDRVVIKSDGGALYITTDLAYAKERLEQR 228
Query: 338 GFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSG 397
GF I + G D G I R+ A A+ P + V + K+GK ++S R+G
Sbjct: 229 GFDLIIYVLGADQHGHIQRLFAAAAALGY-DPESVEVLHIGFGVVLGKDGK--RMSTRAG 285
Query: 398 SYITI---------RNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFD 448
+ +T+ R + + D +E I G D R+ +S DTD+IFD
Sbjct: 286 NVVTLDDLLDEALERAMDIKEKNRDLTADELEAVATAI-GVDAARYADLSSNRDTDYIFD 344
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA
synthetases. This domain is found in arginyl tRNA
synthetases (ArgRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ArgRS catalyzes the
transfer of arginine to the 3'-end of its tRNA.
Length = 156
Score = 153 bits (389), Expect = 5e-44
Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 428 GRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLIS 487
G +++ +S K D+ FD + L + + Y+QYAHAR+ S+L + G ++
Sbjct: 4 GVGAVKYQDLSNKRIKDYTFDWERMLSF-EGDTGPYLQYAHARLCSILRKAGETIEAEA- 61
Query: 488 IKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILV 547
DLS L E L++ L+ +PEV+ N+ + L PH +A YL DLA +YN +L
Sbjct: 62 DADLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLG 121
Query: 548 KNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
++ ARLAL+ + QVL NGL L+GI AP +M
Sbjct: 122 AEEELRNARLALVAAARQVLANGLDLLGIEAPERM 156
>gnl|CDD|214846 smart00836, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain of
Arginyl tRNA synthetase. This domain is known as the
DALR domain after characteristic conserved amino acids.
Length = 122
Score = 141 bits (359), Expect = 3e-40
Identities = 57/122 (46%), Positives = 82/122 (67%), Gaps = 3/122 (2%)
Query: 464 IQYAHARIFSLLNQWGGDKKSL--ISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLC 521
+QYAHARI S+L + G ++L I+ DLS L +E +LL+KL+ +PEVL + + L
Sbjct: 1 VQYAHARICSILRKAGEAGETLPDIADADLSLLTEPEEWALLLKLARFPEVLEAAAEQLE 60
Query: 522 PHYVAFYLRDLAKELHGYYNTERILVKNIT-IKMARLALIYSIGQVLNNGLKLIGISAPT 580
PH +A YL DLA H +YN R+L + ++ ARLAL+ ++ QVL NGL+L+GISAP
Sbjct: 61 PHRLANYLYDLAAAFHSFYNRVRVLGEENPELRKARLALLKAVRQVLANGLRLLGISAPE 120
Query: 581 KM 582
+M
Sbjct: 121 RM 122
>gnl|CDD|218729 pfam05746, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain in
Arginyl and glycyl tRNA synthetase. This domain is known
as the DALR domain after characteristic conserved amino
acids.
Length = 117
Score = 124 bits (313), Expect = 8e-34
Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 464 IQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPH 523
+QYAHARI S+L + + + D L E+E LL L +PEVL + ++L PH
Sbjct: 1 LQYAHARICSILRK--AGELGINLDIDADLLTEEEEKELLKALLQFPEVLEEAAEELEPH 58
Query: 524 YVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
+A YL +LA H +YN R+L ++ + ARLAL+ ++ QVL NGL L+GI AP KM
Sbjct: 59 RLANYLYELASAFHSFYNNCRVLDEDNEERNARLALLKAVRQVLKNGLDLLGIEAPEKM 117
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.
Length = 562
Score = 125 bits (315), Expect = 2e-30
Identities = 125/580 (21%), Positives = 257/580 (44%), Gaps = 72/580 (12%)
Query: 31 ILEYPRHASHGDIS--CNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKP 88
++E P+ GD + C ++K+ + +AK +A+ L +E + P
Sbjct: 27 LIETPKQDEFGDAAFPC---FSLAKQYKKAPAIIAKEVAEKLSDP-----FFTKVEAVGP 78
Query: 89 GFINLKIS-SSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCA 147
++N+ + ++ ++K IL+ ++GQ++ G K ++I++ S N P +GH R
Sbjct: 79 -YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTM 137
Query: 148 IGDILSSLFISQGYKVTREFYYNDTGVQITNL----------ALSVQARAKAIFLGKSTW 197
IG+ L + GY+V Y D G Q L A+ + + +F +
Sbjct: 138 IGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQF 197
Query: 198 PDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDL 257
+ + E + + + + KK + D + N ++ ++++FS Y
Sbjct: 198 HEEVKDDEELEEEGRAWFKKLE--EGDEEAVELWNWFRHE--SLKEFSRIYEL------- 246
Query: 258 KIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDR---VV 314
GV+F N+ E+ + + +L + +GAL + +++ ++
Sbjct: 247 --LGVEFTNFQGEA--FYNDLMEDFIGILEEHDLLEESEGALVVNL----EEEGMPPCLI 298
Query: 315 RKSNGDFTYFVSDIAYHIFKWER-GFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYP 373
RKS+G Y D+ +++ GF +A+ + G + + L+ + Y
Sbjct: 299 RKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLG------YT 352
Query: 374 NYILHKMVT---VIKNGKEVKISKRSGSYITIRNLIK-----WLSKTESKNDSIEFREDL 425
+ V ++K+GK K+S R G + + +++ E KN +++ +E++
Sbjct: 353 WVDGMEHVPFGLILKDGK--KMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEV 410
Query: 426 IR--GRDLMRFFLISRKSDTDFIFDIDLALKRSDEN-PVYYIQYAHARIFSLLNQWGGDK 482
+ G + F + + + F ++ LK E P Y+QY HAR S+L + +
Sbjct: 411 AKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGP--YVQYTHARACSILRKESVEF 468
Query: 483 KSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNT 542
++ +L + S++ L+ +P+V+ + P ++ Y+ D+A+ + YY
Sbjct: 469 ETCTF-----ALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGN 523
Query: 543 ERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
RIL + K +RLAL+Y++ VL GL+L+G+ AP +M
Sbjct: 524 VRIL-EESAEKDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562
>gnl|CDD|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
dom. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain
1 (Add-1). It is about 140 residues long and it has
been suggested that this domain will be involved in
tRNA recognition.
Length = 85
Score = 76.9 bits (190), Expect = 2e-17
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 7 QRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKII 66
+ + ALK L I LE P+ HGD + N++ +++KKL+ N +LA+ I
Sbjct: 1 DLLKEAIAEALKKALGVEGEPIDIALERPKDPDHGDYATNVAFRLAKKLKKNPRELAEEI 60
Query: 67 AKNLIQQKNYIKLIQSIEIIKPGFINLKI 95
A+ L L++ +EI PGFIN +
Sbjct: 61 AEKL----PKSDLVEKVEIAGPGFINFFL 85
>gnl|CDD|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
domain. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain
1 (Add-1). It is about 140 residues long and it has
been suggested that this domain will be involved in
tRNA recognition.
Length = 84
Score = 71.5 bits (176), Expect = 2e-15
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 7 QRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKII 66
+ K AL V ++E P+ GD + N++M+++KKL+ N ++A+ I
Sbjct: 1 DLLKKAIAEALAKAG-LDLEVIDPVIETPKDPEFGDYATNVAMKLAKKLKKNPREIAEEI 59
Query: 67 AKNLIQQKNYIKLIQSIEIIKPGFINLKI 95
A+ L LI+ +E+ PGFIN +
Sbjct: 60 AEKL----PKSDLIEKVEVAGPGFINFFL 84
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 77.4 bits (191), Expect = 6e-15
Identities = 86/349 (24%), Positives = 141/349 (40%), Gaps = 59/349 (16%)
Query: 7 QRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQ--INSYK--- 61
+ + KLF +L+ + V ++ + GD CN +M + KL+ S+K
Sbjct: 1 RELAKLFEASLRLTVPDEPSVEPLVAA-CTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPR 59
Query: 62 -LAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIG 120
+A+ I KNL + +I+S + PGF+N+++S+S K I+ +L GI +
Sbjct: 60 AVAQAIVKNLPASE----MIESTSVAGPGFVNVRLSASWLAKRIERMLVDGID-TWAPTL 114
Query: 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQ----I 176
K+ +++F S N +H+GH R IGD L+ + G +V R + D G Q I
Sbjct: 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLI 174
Query: 177 TNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKIN 236
+L F + D A I D+ + + KK +D A +
Sbjct: 175 EHL--------FEKFPNWESVSDQA-----IGDLQEFYKAAKKRFDEDEEFKARAQQAVV 221
Query: 237 DLKA----------------IRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVS 280
L+ R+F Y R ++L+ G F N +
Sbjct: 222 RLQGGDPEYRAAWAKICEISRREFEKVYQR--LRVELEEKGESFYNP----------YIP 269
Query: 281 LVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIA 329
V + L G DGA + G D +V KS+G F Y +D+A
Sbjct: 270 GVIEELESKGLVVESDGARVIFVE--GFDIPLIVVKSDGGFNYASTDLA 316
Score = 52.7 bits (127), Expect = 4e-07
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 439 RKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEK 498
R ++ F FD L LK N Y+ YAHARI S++ + G D L + L+
Sbjct: 439 RLTNYTFSFDQMLDLK---GNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIV-LDHPD 494
Query: 499 ELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYY 540
E +L + L +PEV+ + DL P+ + YL +L+++ +Y
Sbjct: 495 ERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFY 536
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 41.3 bits (97), Expect = 3e-04
Identities = 19/54 (35%), Positives = 23/54 (42%)
Query: 127 IEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLA 180
F P G LHIGH R D L+ + GYKV +D G I + A
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPA 54
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 37.5 bits (87), Expect = 0.003
Identities = 19/87 (21%), Positives = 37/87 (42%)
Query: 489 KDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVK 548
K + L E + LL +L + + N+++ L P L EL+ Y + + ++
Sbjct: 31 KWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDELKPALQ 90
Query: 549 NITIKMARLALIYSIGQVLNNGLKLIG 575
++ A LA++ + VL L
Sbjct: 91 TEELREAVLAVLRAALVVLTKLLAPFT 117
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 38.8 bits (91), Expect = 0.006
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLAL 181
P+G LH+GH R IGDI++ QGY V ++ G+ N A+
Sbjct: 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAI 58
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 38.4 bits (90), Expect = 0.010
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
P+G LH+GH R IGD+++ QGY V
Sbjct: 45 PSGALHVGHVRNYTIGDVIARYKRMQGYNV 74
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 38.3 bits (89), Expect = 0.012
Identities = 15/72 (20%), Positives = 29/72 (40%)
Query: 116 QSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQ 175
+++ +K + G +H GH R I ++ + +G V ++ TG
Sbjct: 18 EADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTP 77
Query: 176 ITNLALSVQARA 187
I LA ++ R
Sbjct: 78 ILGLAELIKRRD 89
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 35.9 bits (83), Expect = 0.075
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
P+G LH+GH R I D+LS + +GY V
Sbjct: 40 PSGALHMGHVRNYTITDVLSRYYRMKGYNV 69
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 35.3 bits (82), Expect = 0.094
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 133 NPTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
N TG LH+GH + DIL+ +GY V
Sbjct: 43 NVTGSLHMGHALNYTLQDILARYKRMRGYNV 73
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 32.3 bits (74), Expect = 0.93
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 133 NPTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
N TG LHIGH +I DI++ +GY V
Sbjct: 43 NVTGSLHIGHALNWSIQDIIARYKRMKGYNV 73
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 31.6 bits (73), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
P+G LH+GH R IGD+++ QGY V
Sbjct: 43 PSGGLHMGHVRNYTIGDVIARYKRMQGYNV 72
>gnl|CDD|219654 pfam07944, DUF1680, Putative glycosyl hydrolase of unknown function
(DUF1680). The members of this family are sequences
derived from hypothetical bacterial and eukaryotic
proteins of unknown function. One members of this family
is annotated as a possible arabinosidase, but no
references were found to back this. These proteins are
related to a large family of glycosyl hydrolases.
Length = 511
Score = 31.5 bits (72), Expect = 1.4
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 26/116 (22%)
Query: 319 GDFTYFVSD--IAYHIF-------KWERGFI---QAINIQGDDH-QGTITRVKAGLQAIN 365
GD+ Y SD + +++ K + G + Q N D + T+ K +
Sbjct: 377 GDYIYTHSDDGLYVNLYIPSTADWKLKGGEVTLRQETNYPWDGQVRLTVKTAKPAEFTLY 436
Query: 366 IGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEF 421
+ IP T+ NGK V + +S Y++I +W K D +E
Sbjct: 437 LRIPGWAAGA------TLTVNGKPVVVQPKSDGYLSITR--EW-----KKGDRVEL 479
>gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase
[Transcription].
Length = 1117
Score = 31.5 bits (71), Expect = 1.5
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 424 DLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQ--WGGD 481
D +R + L++ F+ K D + I+L ++ + + + + LL Q GD
Sbjct: 43 DFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGD 102
Query: 482 KKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDL 532
+ ++ +SLN + L L N V D+ H F ++
Sbjct: 103 SLTY-ALLCQASLNPTQRQLGLPVLHELIHRSANGVIDILMHESVFSPEEV 152
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 31.0 bits (71), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 138 LHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAI 190
LH+GHGR IGD+++ +GY V ++ TG I +A +
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPET 53
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 30.8 bits (70), Expect = 2.4
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 21/73 (28%)
Query: 500 LSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLAL 559
L+LL L+ Y E+ N D P F AK GYY L KNI
Sbjct: 546 LNLLHILALYKEIRENPQADRVPRVFLFG----AKAAPGYY-----LAKNI--------- 587
Query: 560 IYSIGQV---LNN 569
I++I +V +NN
Sbjct: 588 IFAINKVAEVINN 600
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 30.6 bits (70), Expect = 3.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 133 NPTGPLHIGHGR 144
NP+GPLH+GH R
Sbjct: 109 NPSGPLHLGHAR 120
>gnl|CDD|233420 TIGR01452, PGP_euk, phosphoglycolate/pyridoxal phosphate
phosphatase family. PGP is an essential enzyme in the
glycolate salvage pathway in higher organisms
(photorespiration in plants). Phosphoglycolate results
from the oxidase activity of RubisCO in the Calvin cycle
when concentrations of carbon dioxide are low relative
to oxygen. In mammals, PGP is found in many tissues,
notably in red blood cells where P-glycolate is and
important activator of the hydrolysis of
2,3-bisphosphoglycerate, a major modifier of the oxygen
affinity of hemoglobin. Pyridoxal phosphate (PLP,
Vitamin B6) phosphatase is involved in the degradation
of PLP in mammals and is widely distributed in human
tissues including erythrocyes. The enzymes described
here are members of the Haloacid dehalogenase
superfamily of hydrolase enzymes (pfam00702). Unlike the
bacterial PGP equivalog (TIGR01449), which is a member
of class (subfamily) I, these enzymes are members of
class (subfamily) II. These two families have almost
certainly arisen from convergent evolution (although
these two ancestors may themselves have diverged from a
more distant HAD superfamily progenitor). The primary
seed sequence for this model comes from Chlamydomonas
reinhardtii, a photosynthetic alga. The enzyme has been
purified and characterized and these data are fully
consistent with the assignment of function as a PGPase
involved in photorespiration. The second seed, from Homo
sapiens chromosome 22 has been characterized as a
pyridoxal phosphatase. Biochemical characterization of
partially purified PGP's from various tissues including
red blood cells have been performed while one gene for
PGP has been localized to chromosome 16p13.3. The
sequence used here maps to chromosome 22. There is
indeed a related gene on chromosome 16 (and it is
expressed, since EST's are found) which shows 46%
identity and 59% positives by BLAST2 (E=1e-66). The
chromosome 16 gene is not in evidence in nraa but
translated from the genomic sequence would score 372.4
(E=7.9e-113) versus This model, well above trusted. The
third seed, from C. elegans, is only supported by
sequence similarity. This model is limited to eukaryotic
species including S. pombe and S. cerevisiae, although
several archaea score between the trusted and noise
cutoffs. This model is closely related to a family of
bacterial sequences including the E. coli NagD and B.
subtilus AraL genes which are characterized by the
ability to hydrolyze para-nitrophenylphosphate (pNPPases
or NPPases). The chlamydomonas PGPase d.
Length = 279
Score = 29.8 bits (67), Expect = 3.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 500 LSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDL 532
LS + +L E L DL P YV L DL
Sbjct: 247 LSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 30.4 bits (69), Expect = 3.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 133 NPTGPLHIGHGR 144
+PTG LHIGH R
Sbjct: 17 SPTGYLHIGHAR 28
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 29.7 bits (66), Expect = 4.9
Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 41/282 (14%)
Query: 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQ--GYKVTREFYYNDTGVQITNL 179
N ++ F + +PTG LHIG R + + LF G + R ++ T+
Sbjct: 2 NNNVITRF-APSPTGFLHIGSARTA----LFNYLFARHHNGKFLLR--------IEDTDK 48
Query: 180 ALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLK 239
S + +AIF G W +NGE I F K+ + K+ ++ ++ NGK
Sbjct: 49 ERSTKEAVEAIFSGLK-WLGLDWNGEVI------FQSKRNNLYKEAALKLLQNGKA--YY 99
Query: 240 AIRDFSVAYLRREQDIDLK---IFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKD 296
+R+Q ++ K IF ++ + + S+Y T ++ + G D
Sbjct: 100 CFTRQEEIERQRQQALENKQHFIFNSEWRDK--DPSIYPTDIKPVIRLKTPREGSITIHD 157
Query: 297 GALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITR 356
+ D V+ +++G TY ++ + + + G I+GDDH R
Sbjct: 158 TLQGEVVIENSHIDDMVLLRADGTATYMLAVV---VDDHDMGITHI--IRGDDHLTNAAR 212
Query: 357 VKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGS 398
A QA +P+ + H + +I K+SKR G+
Sbjct: 213 QLAIYQAFGYAVPS-----MTH--IPLIHGADGAKLSKRHGA 247
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 29.2 bits (66), Expect = 5.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 133 NPTGPLHIGHGR 144
NP GPLH+GH R
Sbjct: 9 NPNGPLHLGHAR 20
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 29.4 bits (66), Expect = 6.0
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 133 NPTGPLHIGHGR 144
NP+GPLHIGH R
Sbjct: 101 NPSGPLHIGHAR 112
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 28.8 bits (65), Expect = 6.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 138 LHIGHGRQCAIGDILSSLFISQGYKVT 164
HIGH R D+L + GY V
Sbjct: 23 SHIGHARSAVAFDVLRRYLQALGYDVQ 49
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 28.8 bits (65), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 133 NPTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
N TG LH+GH I DI++ +GY V
Sbjct: 11 NVTGSLHMGHALNNTIQDIIARYKRMKGYNV 41
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 28.8 bits (65), Expect = 9.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 116 QSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDIL 152
++ S KK +I N TG LHIGH AI D L
Sbjct: 53 AKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSL 89
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 28.3 bits (64), Expect = 9.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 139 HIGHGRQCAIGDILSSLFISQGYKVT 164
HIGH R + D+L GYKV
Sbjct: 35 HIGHARTYVVFDVLRRYLEDLGYKVR 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.395
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,622,041
Number of extensions: 2973937
Number of successful extensions: 2769
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2720
Number of HSP's successfully gapped: 73
Length of query: 582
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 480
Effective length of database: 6,413,494
Effective search space: 3078477120
Effective search space used: 3078477120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)