RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5226
(582 letters)
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 592 bits (1529), Expect = 0.0
Identities = 149/491 (30%), Positives = 242/491 (49%), Gaps = 38/491 (7%)
Query: 93 LKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDIL 152
+ +S + ++ L++ F + + L+E+VSANPTGPLHIGH R GD L
Sbjct: 1 MSLSKTFLNELANQALTNPNDFTKGE-KKQESFLLEYVSANPTGPLHIGHARGAVFGDTL 59
Query: 153 SSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKS-TWPDTAYNGEYITDIA 211
+ L GYK E+Y ND G QI L LS+ K L ++ +P+ Y GEYI D+A
Sbjct: 60 TRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLA 119
Query: 212 KCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLES 271
K +K ++ ++ D++ + +L+ +K D+Y E
Sbjct: 120 KEAFEKFGKEFFSE----------ENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSER 169
Query: 272 SLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYH 331
S Y ++ + L + Y ++G +WL ++ GD+KDRV+ + +G TY +DI YH
Sbjct: 170 SYYD--ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYH 227
Query: 332 IFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVK 391
K RG+ + INI G DH G I R+KA ++ +G ++ IL +MV+++K+G+ K
Sbjct: 228 KDKMSRGYGKCINIWGADHHGYIPRMKAAMEF--LGFDSNNLEIILAQMVSLLKDGEPYK 285
Query: 392 ISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDL 451
+SKR+G++I + +++ + G D +R+ +S+K DT FDI
Sbjct: 286 MSKRAGNFILMSDVVDEI------------------GSDALRYIFLSKKCDTHLEFDISD 327
Query: 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPE 511
K NPVYYI YAHARI + + G ++ DL SL + ++LL + N
Sbjct: 328 LQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKA-DLQSL-NQDGVNLLFEALNLKA 385
Query: 512 VLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGL 571
VL ++ + + YL++LA H +YN +++ L L + +
Sbjct: 386 VLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANE--NDLLKLFSLVALSIKTAF 443
Query: 572 KLIGISAPTKM 582
L+GI A KM
Sbjct: 444 SLMGIEAKNKM 454
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 389 bits (1001), Expect = e-128
Identities = 148/639 (23%), Positives = 267/639 (41%), Gaps = 67/639 (10%)
Query: 1 MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSY 60
ML+E ++ + + +K + + I L+ GD I+ +++K L+
Sbjct: 1 MLMEIRESVKERIEEIIKEIAPQWE--GEIELKETPDPKLGDFGTPIAFKLAKLLKRPPI 58
Query: 61 KLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKIS-SSIKQKIIKYILSSGIKFGQSNI 119
++A+ I + L + N + I+ ++ + G+IN+ I + +I IL+ G +FG S I
Sbjct: 59 EIAEKIVEKL--KLNLPEGIKDVKAV-NGYINVFIDYPHFARILINDILAKGDRFGSSEI 115
Query: 120 GSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNL 179
G KK+++E S NPT PLH+GH R +GD+++ + GY+V + Y +D G+Q +
Sbjct: 116 GKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQV 175
Query: 180 ALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKK-KKIISKDRSINIIANGKINDL 238
+ + + I + + + + + + L
Sbjct: 176 YWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKL 235
Query: 239 KAIRDFSVA---YLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYK 295
++ + + R Q + GVK+D ES + + + +LL ++ Y
Sbjct: 236 ESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIP 295
Query: 296 D-----GALWLRTTDYGDDKDR---VVRKSNGDFTYFVSDIAYHIFKWER---------- 337
GA + D V+R+S+G TY DIAYH++K+ +
Sbjct: 296 SDGKYRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEW 355
Query: 338 -------------------GFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILH 378
IN+ G + + +K LQ +G + N
Sbjct: 356 DSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQL--LGFEDAAANLYHL 413
Query: 379 KMVTVIKNGKEVKISKRSGSYITI--RNLI-----KWLSKTESKND--SIEFREDLIR-- 427
V E K S R G+++ +I + E KN S E + ++
Sbjct: 414 AYEHV--ERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKV 471
Query: 428 GRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLIS 487
G +R+ LI D IF + L E+ YIQYAHAR S+L + + +
Sbjct: 472 GIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAP-YIQYAHARCSSILRKAEEEGIKVDP 530
Query: 488 IKDLS----SLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTE 543
+ +E+E L++ LS +P ++ + KD+ PH +A++ +LA + +Y
Sbjct: 531 ETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDH 590
Query: 544 RILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
+L ++ ARL L+ ++ QVL N L L+GI AP +M
Sbjct: 591 PVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAPERM 629
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 347 bits (891), Expect = e-112
Identities = 125/629 (19%), Positives = 230/629 (36%), Gaps = 93/629 (14%)
Query: 9 IIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAK 68
+ + A+ L + + + + GD + ++K+L+ +A+ +
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQELKD 60
Query: 69 NLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIE 128
L + ++ + G++N ++ + +++ L F + +L+E
Sbjct: 61 RL----PLPEFVEEAVPV-GGYLNFRLR---TEALLREALRPKAPFPRRP----GVVLVE 108
Query: 129 FVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAK 188
S NP LH+GH R A+GD ++ + G +V Y +DTG Q +++
Sbjct: 109 HTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGL 168
Query: 189 AIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDF---- 244
+ D G + +D + L A+
Sbjct: 169 TWDGKEK--YDHFA-GRA-----------YVRLHQDPEYERLQPAIEEVLHALERGELRE 214
Query: 245 SVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKD-----GAL 299
V + Q + ++D ES + + G + LL QS + GAL
Sbjct: 215 EVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGAL 274
Query: 300 WLRTTDYG---DDKDRVVRKSNGDFTYFVSDIAYHIFKWER------------------- 337
+ + +D V+ +SNG TY+ DIA+ +K
Sbjct: 275 VMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRT 334
Query: 338 ----------GFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNG 387
+ IN+ V+A L G P TV+ G
Sbjct: 335 SAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALA--GYPALAEKAHHLAYETVLLEG 392
Query: 388 KEVKISKRSGSYITIRNLI-----KWLSKTESKNDSIEFREDLIR--GRDLMRFFLISRK 440
+ ++S R G +++ ++ + + E KN +E+ R +RF ++ +
Sbjct: 393 R--QMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTE 450
Query: 441 SDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKEL 500
F AL + Y +QYAHAR S+L + G +S T E
Sbjct: 451 PKKQIDFRYQEALSFEGDTGPY-VQYAHARAHSILRKAGEWGAPDLS------QATPYER 503
Query: 501 SLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTER-------ILVKNITIK 553
+L + L ++ E ++ + ++ PH +A YL DLA + YYN +L ++
Sbjct: 504 ALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLR 563
Query: 554 MARLALIYSIGQVLNNGLKLIGISAPTKM 582
RL+L+ S+ + L GL L+GI AP M
Sbjct: 564 ELRLSLVQSLQRTLATGLDLLGIPAPEVM 592
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 256 bits (655), Expect = 2e-77
Identities = 137/604 (22%), Positives = 238/604 (39%), Gaps = 55/604 (9%)
Query: 6 KQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKI 65
+ + L + + + LE+ GD+ I + N LA
Sbjct: 32 VDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR--LRIKGANPKDLAVQ 89
Query: 66 IAKNLIQQKNYIKLIQSIEIIKPGFINLKISSS-IKQKIIKYILSSGIKFGQSNIGSNKK 124
A+ ++ +E P FI + + + +I IL+ +G + NKK
Sbjct: 90 WAEKFPCGD----FLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK 144
Query: 125 ILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQ 184
++IEF S N P H GH R IG L++L+ G++V R Y D G Q LA+ +
Sbjct: 145 VIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFE 204
Query: 185 ARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDL------ 238
L K P Y+ I K ++ I ++S N A +
Sbjct: 205 RYGNEEALVKD--PIHHLFDVYVR-INKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEE 261
Query: 239 -----KAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTY 293
K R+FS+ +K+D Y ES + K + + L + G T+
Sbjct: 262 ALKIWKRFREFSIEKYID----TYARLNIKYDVYSGESQVSKESMLKAI-DLFKEKGLTH 316
Query: 294 YKDGALWLRTTDYGD-DKDRVVRKSNGDFTYFVSDIAYHIFKWER-GFIQAINIQGDDHQ 351
GA+ + T + +V+KS+G Y D+ + ++E+ F + I +
Sbjct: 317 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 376
Query: 352 GTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLI----- 406
+ L+ + ++ + H + G +S R G+ + + N++
Sbjct: 377 LHAAQFFEILKQMGF----EWAKDLQH-----VNFGMVQGMSTRKGTVVFLDNILEETKE 427
Query: 407 ---KWLSKTESKNDSIEFREDLIR--GRDLMRFFLISRKSDTDFIFDIDLALKRSDE--- 458
+ + K E+K IE E++ G + + K ++ F + L S E
Sbjct: 428 KMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERML--SFEGDT 485
Query: 459 NPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVK 518
P Y+QYAH+R+ S+ G + D S L L+ L YP+VL N++K
Sbjct: 486 GP--YLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIK 543
Query: 519 DLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISA 578
P V YL L ++ Y+ + + + ARLAL + QVL NG++L+G++
Sbjct: 544 THEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTP 603
Query: 579 PTKM 582
+M
Sbjct: 604 VERM 607
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578,
structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella
pneumoniae subsp}
Length = 109
Score = 79.3 bits (196), Expect = 4e-18
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 6 KQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKI 65
+ + + + AL + P + GD N M ++KKL + +LA+
Sbjct: 7 QALLSEKVSQALIAAGAPADCEPQV--RQSAKVQFGDYQANGVMAVAKKLGMAPRQLAEQ 64
Query: 66 IAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFG 115
+ +L + +EI PGFIN+ + + + L S + G
Sbjct: 65 VLSHLDLN----GIANKVEIAGPGFINIFLDPAFLADNVNRALQSE-RLG 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 5e-11
Identities = 78/461 (16%), Positives = 143/461 (31%), Gaps = 126/461 (27%)
Query: 44 SCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIK-LIQSIEIIKPGFINLKISSSIKQK 102
+CN + + LQ KL I N + ++ + I I+ L S +
Sbjct: 191 NCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 103 IIKYIL----SSGI--KFGQSNIGSNKKILI--------EFVSANPTGPLHIGHGRQCAI 148
++ +L ++ F N+ KIL+ +F+SA T + + H
Sbjct: 247 LL--VLLNVQNAKAWNAF---NLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 149 GDILSSLFISQ-GYKVT---REFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNG 204
D + SL + + RE + LS+ A + L +TW + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPRE------VLTTNPRRLSIIAESIRDGL--ATWDNWKH-- 349
Query: 205 EYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAI-RDFSVAYLRREQDIDLKIFGV- 262
D K II + S+N++ + + + + SV I + +
Sbjct: 350 -VNCD------KLTTII--ESSLNVL---EPAEYRKMFDRLSV--FPPSAHIPTILLSLI 395
Query: 263 --KFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGD--------DKDR 312
+ + K K SLV K + L L+ + D
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 313 VVRK-SNGDFT------YFVSDIAYHIFKWERG--------------FIQA-INIQGDDH 350
+ + + D YF S I +H+ E F++ I H
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-----H 509
Query: 351 QGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSY-ITIRNLIKWL 409
T + Y + I Y + ++ +L
Sbjct: 510 DSTAWNASGSILN----TLQQLKFYKPY-------------ICDNDPKYERLVNAILDFL 552
Query: 410 SKTESKNDSIEFREDLIRGR--DLMRFFLISRKSDTDFIFD 448
K E E+LI + DL+R L+ ++ + IF+
Sbjct: 553 PKIE---------ENLICSKYTDLLRIALM---AEDEAIFE 581
Score = 52.2 bits (124), Expect = 4e-07
Identities = 58/356 (16%), Positives = 111/356 (31%), Gaps = 93/356 (26%)
Query: 8 RIIKLFNLALKPLLIKT---NIVPTIILEYPRHASHGDISCNI----SMQI-SKKLQINS 59
+ FNL+ K +L+ T + + H S S + + K L
Sbjct: 257 KAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 60 YKLAK-----------IIAKNLI---------QQKNYIKL---IQ-SIEIIKPG-----F 90
L + IIA+++ + N KL I+ S+ +++P F
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 91 INLKI---SSSIKQKIIKYILSSGIKFGQSNI--GSNKKILIEFVSANPTGPLHIGHGRQ 145
L + S+ I ++ I IK + +K L+E T + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 146 CAIGDILSSL---FISQGYKVTREFYYNDTGVQITNLALSVQARAKAIF--LGKSTWPDT 200
+ +L + Y + + F +D L + + +G
Sbjct: 436 KVKLENEYALHRSIVDH-YNIPKTFDSDD---------LIPPYLDQYFYSHIG------- 478
Query: 201 AY------NGEYITDIAKCFLK----KKKIISKDRSINIIANGKINDL--------KAIR 242
+ + E +T FL ++KI + N A+G I + I
Sbjct: 479 -HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN--ASGSILNTLQQLKFYKPYIC 535
Query: 243 DFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGA 298
D Y R I + F E +L + L+ L+ + +++
Sbjct: 536 DNDPKYERLVNAI------LDFLPKI-EENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 49.9 bits (118), Expect = 2e-06
Identities = 73/433 (16%), Positives = 119/433 (27%), Gaps = 138/433 (31%)
Query: 209 DIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYC 268
DI F + D K ++D + L +E +ID I K
Sbjct: 20 DILSVFEDA---FVDNF-----------DCKDVQDMPKSILSKE-EID-HIIMSKDA--- 60
Query: 269 LESSLYKTGKVSLVTKLLIQSGKTYYK--DGAL-----WL-------------RTTDYGD 308
S + L LL + + K + L +L T Y +
Sbjct: 61 -VSGTLR-----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 309 DKDRVVRKSNGDFT-YFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIG 367
+DR+ N F Y VS R +++ L +
Sbjct: 115 QRDRLYN-DNQVFAKYNVS----------R-------------LQPYLKLRQALLELR-- 148
Query: 368 IPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNL---IKWLS--KTESKNDSIEFR 422
P N ++ ++ GK SY + I WL+ S +E
Sbjct: 149 -PA--KNVLIDGVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 423 EDLIRGRDLMRFFLISRKSDTDF-IFDIDLALKRSDENPVYY--------IQYA-HARIF 472
+ L+ D S+ I I L+R ++ Y +Q A F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 473 -------------SLLNQWGGDKKSLISIKDLSSLNTEKE-LSLLVK-LSNYPEVLVNSV 517
+ + + IS+ S T E SLL+K L P+ L V
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 518 KDLCPHYVA--------------FY---------------LRDL-AKELHGYYNTERILV 547
P ++ + L L E ++ +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 548 KNITIKMARLALI 560
+ I L+LI
Sbjct: 383 PSAHIPTILLSLI 395
Score = 35.2 bits (80), Expect = 0.065
Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 80/247 (32%)
Query: 1 MLLEEKQRIIKLFNLALKPLLIK------------TNIVPTIILE--------------- 33
+ ++ II+ L+P + +I PTI+L
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVV 408
Query: 34 -----------------YPRHASHGDISCNISMQIS--KKLQINSYKLAKIIAKN---LI 71
+ + ++ + + + + + ++ Y + K +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPP 467
Query: 72 QQKNYI-----------KLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIG 120
Y + + + + + F++ + ++QKI + N
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWNASGSILNTL 524
Query: 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDIL----SSLFISQGYKVTR-------EFYY 169
K ++ N AI D L +L S+ + R E +
Sbjct: 525 QQLKFYKPYICDNDPKY----ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 170 NDTGVQI 176
+ Q+
Sbjct: 581 EEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 2e-09
Identities = 97/555 (17%), Positives = 177/555 (31%), Gaps = 196/555 (35%)
Query: 130 VSANPTGPLHIGHGR-QCAI---------GDILSSLFISQGYKVTREFYYNDTGVQITNL 179
+ A T PL + HG + + L F + T F +D L
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 180 ALSVQARAKAIFLG-KSTWPDTAYNGEY-------ITDIAKCFLKKKKI------ISKDR 225
+ FLG S+ + + G++ +T+ C+L+ I + ++
Sbjct: 61 V----GK----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 226 SINIIANGKINDLKAIRDF----------------SVAYLRREQDIDLKIFGVKF----- 264
++ ++ I+++ S A R + + ++ + F
Sbjct: 113 DTTLVKTKEL-----IKNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAI-FGGQGN 165
Query: 265 -DNYCLE-SSLYKTGKVSLVTKLLIQSGKT-------------YYKDG---ALWLRTTDY 306
D+Y E LY+T LV L+ S +T + G WL
Sbjct: 166 TDDYFEELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 307 GDDKDRVVRKSNGDFTYFVSDIAYH---IFKWERGFIQAIN------IQGDDH------- 350
DKD Y +S I I G IQ + + G
Sbjct: 225 TPDKD-----------YLLS-IPISCPLI-----GVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 351 QGTITRVKAGLQAINIGIPNDYPNY--ILHKMVTVIKNGKEVKISKRSGSYITIRNLIKW 408
+G + + A+ I + + ++ + K +TV+ I R Y N
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-----FFIGVR--CYEAYPNTSLP 320
Query: 409 LSKTESKNDSIEFREDL------IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVY 462
S E DS+E E + I ++++ D++ + L
Sbjct: 321 PSILE---DSLENNEGVPSPMLSISN--------LTQEQVQDYVNKTNSHLPAGK----- 364
Query: 463 YIQYAHARIFSLLNQWGGDKKSLIS--IKDLSSLNT-------------------EKELS 501
I SL+N G K ++S + L LN E++L
Sbjct: 365 -----QVEI-SLVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 502 LLVK-L-------SNYPEVLVNSV----KDLCPHYVAFYLRDLAKELHGYYNTE-----R 544
+ L S+ LV + KDL + V+F +D+ + Y+T R
Sbjct: 416 FSNRFLPVASPFHSHL---LVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLR 469
Query: 545 ILVKNITIKMARLAL 559
+L +I+ ++ +
Sbjct: 470 VLSGSISERIVDCII 484
Score = 37.3 bits (86), Expect = 0.015
Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 69/222 (31%)
Query: 383 VIKNGK-EVKISKRSGSYITIRNL----IKWLSK-TESKNDSIEFREDLIRGRDLMRFFL 436
+ +G E + + S+ L K L + TE E +L+ FL
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA----ELVGKFL 65
Query: 437 --ISRKSDTDFIFDIDLALKRS---------DENPVYYIQYAHARIFSLLNQWGGDKKSL 485
+S + + D L + N + HA LL + + +L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------HALAAKLLQE---NDTTL 116
Query: 486 ISIKDL------SSLNTEKELSLLVKLSNYPEVLVNSVKD----LCPHYVAF-------- 527
+ K+L + + ++ L +V + L F
Sbjct: 117 VKTKELIKNYITARIMAKRPFD-----KKSNSALFRAVGEGNAQL---VAIFGGQGNTDD 168
Query: 528 YLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNN 569
Y +L ++L Y T +LV LI + L+
Sbjct: 169 YFEEL-RDL---YQTYHVLVG---------DLIKFSAETLSE 197
Score = 29.6 bits (66), Expect = 3.7
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 35/104 (33%)
Query: 131 SANPTGPLHIGHGRQCAI--GDILSSL-------FISQGYKVTREFY----YNDTGVQIT 177
A P L + AI G + +S + + K T YN Q
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY- 1853
Query: 178 NLALSVQA-RAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKI 220
V A +A+ + +T++ F+K +KI
Sbjct: 1854 -----VAAGDLRAL--------------DTVTNVLN-FIKLQKI 1877
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 37.2 bits (85), Expect = 0.014
Identities = 50/358 (13%), Positives = 98/358 (27%), Gaps = 53/358 (14%)
Query: 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDT----GVQITNLALSVQARAKA 189
P+G +H+G+ R+ I+ +GY+V ++D V
Sbjct: 30 PSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMP 89
Query: 190 IFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRS-INIIANGKINDL--------KA 240
I W E+ + ++K I + G+ ++
Sbjct: 90 ISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDK 149
Query: 241 IRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALW 300
I + Y + L YC E K YK
Sbjct: 150 IMEILNKYREIAKQPPLPENWWPAMVYCPEHR------REAEIIEWDGGWKVKYKCPEGH 203
Query: 301 LRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAG 360
D ++ + + + + + G DH + G
Sbjct: 204 EGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPA-------------GKDHLVAGSSYDTG 250
Query: 361 LQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420
+ I + P ++++ V G++ K+S G+ I + +L + L
Sbjct: 251 KEIIKEVYGKEAPLSLMYEFV--GIKGQKGKMSGSKGNVILLSDLYEVLE---------- 298
Query: 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDL-ALKRSDENPVYYIQYAHARIFSLLNQ 477
L+RF + + + D+ L L DE Y ++
Sbjct: 299 --------PGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERIYFGVEGGKGDDE 348
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.040
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 5 EKQRIIKLFNLALK-------P-LLIKTNI 26
EKQ + KL +LK P L IK +
Sbjct: 18 EKQALKKLQA-SLKLYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 2.4
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 73 QKNYIKLIQ-SIEIIKPGFI-NLKISSSIK 100
+K +K +Q S+++ L I ++++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 34.9 bits (80), Expect = 0.086
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 133 NPTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
+G LH+GH R I D+++ QGY V
Sbjct: 44 YLSGHLHVGHARTYTIPDVIARFKRMQGYNV 74
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis,
dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A
{Thalictrum flavum} PDB: 2vne_A*
Length = 201
Score = 33.9 bits (77), Expect = 0.098
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 25/130 (19%)
Query: 323 YFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVT 382
Y +A H+ G + + I GD GTI + P ++P+ K +
Sbjct: 48 YSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDMTFV--------PGEFPHEYKEKFIL 99
Query: 383 VIKNGKEVKISKRSGSYITIR-----------------NLIKWLSKTESKNDSIEFREDL 425
V + K+ G Y+ + +IK ++ K + ++ E L
Sbjct: 100 VDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL 159
Query: 426 IRGRDLMRFF 435
I L
Sbjct: 160 ITTGPLAAMA 169
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 34.1 bits (79), Expect = 0.13
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
P+G LH+GH + +GD+L+ QGY+V
Sbjct: 44 PSGDLHMGHLKNYTMGDVLARFRRMQGYEV 73
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 33.8 bits (77), Expect = 0.16
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 133 NPTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
+G LH+GH R I D+++ QGY V
Sbjct: 44 YLSGHLHVGHARTYTIPDVIARFKRMQGYNV 74
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 33.7 bits (78), Expect = 0.17
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 134 PTGPLHIGHGRQCAIGDILSSLFISQGYKV 163
P+G LH+GH R IGD+++ G V
Sbjct: 64 PSGRLHMGHVRNYTIGDVIARYQRMLGKNV 93
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: d.15.1.1
Length = 100
Score = 29.6 bits (66), Expect = 0.88
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 23 KTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQS 82
+T + TI + P + + +L I +L IA+ Q+NYIK++ +
Sbjct: 11 RTTGIATIEVFLPPRLKK-----DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65
Query: 83 IEIIKPG 89
+ ++ G
Sbjct: 66 KKQLQLG 72
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 31.0 bits (71), Expect = 1.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 139 HIGHGRQCAIGDILSSLFISQGYKVT 164
HIGHGR D+++ GYK+
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLK 62
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 31.0 bits (71), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 139 HIGHGRQCAIGDILSSLFISQGYKVT 164
HIGHGR I D++ +GY+VT
Sbjct: 40 HIGHGRSWIIFDMVVRYLRMRGYEVT 65
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 30.3 bits (69), Expect = 2.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 139 HIGHGRQCAIGDILSSLFISQGYKVT 164
H+GH D++ L++ G+ V
Sbjct: 54 HLGHAATYLTFDLVHRLWLDAGHTVQ 79
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 29.9 bits (68), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 139 HIGHGRQCAIGDILSSLFISQGYKVT 164
HIG+ R GD+L GYKV
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVN 82
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 29.4 bits (66), Expect = 3.8
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 13/70 (18%)
Query: 413 ESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALK--RSDENPVYYIQYAHAR 470
+++ R+ L+ L +D ++ + +P Y+ + H
Sbjct: 394 ADRHNPETRRKTLL---ALF--------TDHQWVAPAVATADLHSNFGSPTYFYAFYHHC 442
Query: 471 IFSLLNQWGG 480
+ W
Sbjct: 443 QTDQVPAWAD 452
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma
brucei}
Length = 110
Score = 27.9 bits (62), Expect = 3.9
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 386 NGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLIS-RKSDTD 444
+++ + + L++ L K + G+ L L+ D +
Sbjct: 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQ--TGQTLRPGILVLVNSCDAE 78
Query: 445 FIFDIDLALKRSDENPVYYIQYAH 468
+ +D L D V +I H
Sbjct: 79 VVGGMDYVLNDGDT--VEFISTLH 100
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical
bundle, lipid binding; 1.8A {Gallus gallus} SCOP:
a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Length = 188
Score = 28.2 bits (62), Expect = 5.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 YKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIK 100
+LAK +AK ++ L+Q E I LKI S++K
Sbjct: 84 TRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVK 124
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif,
tetramerisat (alpha,beta,BETA,alpha), endoprotease,
hydrolase; 2.70A {Staphylococcus aureus}
Length = 394
Score = 28.8 bits (65), Expect = 5.6
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 13/57 (22%)
Query: 150 DILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEY 206
L +++ E + TG A + P + EY
Sbjct: 40 RTLIDRLKEHDFEIETEIAGHATGF-------------IATYDSGLDGPAIGFLAEY 83
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 28.8 bits (65), Expect = 6.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 133 NPTGPLHIGHGR 144
NP+GPLHIGH R
Sbjct: 104 NPSGPLHIGHAR 115
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related
proteins, multiple- ligand binding, plant protein; HET:
ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Length = 155
Score = 27.6 bits (61), Expect = 7.6
Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 26/133 (19%)
Query: 321 FTYFVSDIAYHIFKWERGFIQAINI-QGDDHQGTITRVKAGLQAINIGIPNDYPNYILHK 379
+ D + K ++ + + +GD GTI P P+Y +
Sbjct: 19 WAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFL--------PEVSPSYQREE 70
Query: 380 MVTVIKNGKEVKISKRSGSYI-----TIRN------------LIKWLSKTESKNDSIEFR 422
+ ++ E+ + G Y+ + L+ + +D E
Sbjct: 71 ITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKV 130
Query: 423 EDLIRGRDLMRFF 435
+ + +
Sbjct: 131 TPTKTSQSTLMYL 143
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 28.7 bits (65), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 133 NPTGPLHIGHGRQCAIGDIL 152
N TG LH+GH ++ D L
Sbjct: 44 NVTGSLHMGHALDNSLQDAL 63
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 28.2 bits (63), Expect = 8.0
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 120 GSNKKILIEFVSANPTGPLHIGHG 143
F P+G +HI G
Sbjct: 54 KRKLICYDGF---EPSGRMHIAQG 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.395
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,797,122
Number of extensions: 545119
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 51
Length of query: 582
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 483
Effective length of database: 3,937,614
Effective search space: 1901867562
Effective search space used: 1901867562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)