RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5226
(582 letters)
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 176 bits (446), Expect = 2e-50
Identities = 60/372 (16%), Positives = 124/372 (33%), Gaps = 50/372 (13%)
Query: 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLAL 181
+L+E S NP LH+GH R A+GD ++ + G +V Y +DTG Q
Sbjct: 6 PGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLF 65
Query: 182 SVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAI 241
+++ D Y+ ++ + ++ + ++ I
Sbjct: 66 ALRHYGLTWD--GKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRI 123
Query: 242 RDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDG---- 297
Q + ++D ES + + G + LL QS +
Sbjct: 124 LLA--------QMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYA 175
Query: 298 -ALWLRTTDYGD---DKDRVVRKSNGDFTYFVSDIAYHIFK-----------WERGFIQA 342
AL + + D V+ +SNG TY+ DIA+ +K +E +
Sbjct: 176 GALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPG 235
Query: 343 INIQGDDHQGTITRVKAGLQAINIGIP--------------NDYPNYILHKMVTVIKNGK 388
+ + + + + + +++ H + +
Sbjct: 236 LRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLE 295
Query: 389 EVKISKRSGSYITIRNLIKWLSKT-----ESKNDSIEFREDLIR--GRDLMRFFLISRKS 441
++S R G +++ +++ ++ E KN +E+ R +RF ++ +
Sbjct: 296 GRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEP 355
Query: 442 DTDFIFDIDLAL 453
F AL
Sbjct: 356 KKQIDFRYQEAL 367
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 163 bits (414), Expect = 3e-46
Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 24/352 (6%)
Query: 117 SNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQI 176
+ NKK++IEF S N P H GH R IG L++L+ G++V R Y D G Q
Sbjct: 2 CKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQF 61
Query: 177 TNLALSVQARAKAIFLGKSTWPD----TAYNGEYITDIAKCFLKKKKIISKDRSINIIAN 232
LA+ + L K + I + ++ K R
Sbjct: 62 GLLAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 121
Query: 233 GKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKT 292
+ I + + +K+D Y ES + K + + +
Sbjct: 122 DGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTH 181
Query: 293 YYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWE-RGFIQAINIQGDDHQ 351
K L T +V+KS+G Y D+ + ++E F + I +
Sbjct: 182 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 241
Query: 352 GTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLI----- 406
+ L+ + D + G +S R G+ + + N++
Sbjct: 242 LHAAQFFEILKQMGFEWAKDLQHVN---------FGMVQGMSTRKGTVVFLDNILEETKE 292
Query: 407 ---KWLSKTESKNDSIEFREDLIR--GRDLMRFFLISRKSDTDFIFDIDLAL 453
+ + K E+K IE E++ G + + K ++ F + L
Sbjct: 293 KMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERML 344
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 118 bits (295), Expect = 5e-30
Identities = 44/332 (13%), Positives = 101/332 (30%), Gaps = 31/332 (9%)
Query: 120 GSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNL 179
G +K ++E P+G +H+G+ R+ I+ +GY+V ++D
Sbjct: 15 GEKEKYVVES-GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVP 73
Query: 180 ALSVQARAKAI--FLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKIND 237
Q + + + P + + K + +K+ + + K +
Sbjct: 74 RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGE 133
Query: 238 LKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDG 297
+ + +I K + E+ + + + DG
Sbjct: 134 YSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENW----WPAMVYCPEHRREAEIIEWDG 189
Query: 298 ALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRV 357
++ + V +S + F G DH +
Sbjct: 190 GWKVKYKCPEGHEGWVDIRSGNVKLRWR----VDWPMRWSHFGVDFEPAGKDHLVAGSSY 245
Query: 358 KAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKND 417
G + I + P ++++ V + G++ K+S G+ I + +L + L
Sbjct: 246 DTGKEIIKEVYGKEAPLSLMYEFVGI--KGQKGKMSGSKGNVILLSDLYEVL-------- 295
Query: 418 SIEFREDLIRGRDLMRFFLISRKSDTDFIFDI 449
L+RF + + + D+
Sbjct: 296 ----------EPGLVRFIYARHRPNKEIKIDL 317
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 110 bits (277), Expect = 1e-29
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 463 YIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCP 522
Y+QYAH+R+ S+ G + D S L L+ L YP+VL N++K P
Sbjct: 5 YLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEP 64
Query: 523 HYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
V YL L ++ Y+ + + + ARLAL + QVL NG++L+G++ +M
Sbjct: 65 TTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM 124
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 126
Score = 99.4 bits (247), Expect = 2e-25
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 463 YIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCP 522
Y+QYAHAR S+L + G +S T E +L + L ++ E ++ + ++ P
Sbjct: 6 YVQYAHARAHSILRKAGEWGAPDLS------QATPYERALALDLLDFEEAVLEAAEERTP 59
Query: 523 HYVAFYLRDLAKELHGYYNTER-------ILVKNITIKMARLALIYSIGQVLNNGLKLIG 575
H +A YL DLA + YYN +L ++ RL+L+ S+ + L GL L+G
Sbjct: 60 HVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLG 119
Query: 576 ISAPTKM 582
I AP M
Sbjct: 120 IPAPEVM 126
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 62.3 bits (150), Expect = 3e-11
Identities = 47/321 (14%), Positives = 89/321 (27%), Gaps = 45/321 (14%)
Query: 134 PT--GPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIF 191
T HIGHGR D+++ GYK+ D + +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDK--------IIKRANEN 81
Query: 192 LGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRR 251
E D + + + I + + AY+
Sbjct: 82 GESFVAMVDRMIAEMHKDFDALNILR---PDMEPRATHHIAEIIELTEQLIAKGHAYVAD 138
Query: 252 EQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKD 311
D+ F V D S ++ ++ + K D LW K+
Sbjct: 139 NGDVM---FDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLW------KMSKE 189
Query: 312 RVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPND 371
+ + +I G + +
Sbjct: 190 GEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQ 249
Query: 372 YPNYILH-KMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRD 430
Y NY +H MV V + + K+SK G++ T+R+++K+ +
Sbjct: 250 YVNYWMHSGMVMV--DRE--KMSKSLGNFFTVRDVLKYY------------------DAE 287
Query: 431 LMRFFLISRKSDTDFIFDIDL 451
+R+FL+S + + +
Sbjct: 288 TVRYFLMSGHYRSQLNYSEEN 308
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 56.6 bits (135), Expect = 3e-09
Identities = 43/356 (12%), Positives = 91/356 (25%), Gaps = 53/356 (14%)
Query: 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLA- 180
K + H+GH + D L+ GY+ ++ G + A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 181 ------LSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGK 234
+ R F AY+ T + + ++ K I G+
Sbjct: 62 AAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGE 121
Query: 235 INDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYY 294
L + + + I G + + ++ K + IQ
Sbjct: 122 YEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLI 181
Query: 295 KDGA--LWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQG 352
+ + D + + + + F +N
Sbjct: 182 RPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYP 241
Query: 353 TITRVKAGLQAINIGIPND--------------------YPNYILHKMVTVIKNGKEVKI 392
+ I D Y + + + + +G+ K+
Sbjct: 242 EGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFL-LGPDGR--KM 298
Query: 393 SKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLIS---RKSDTDF 445
SK G+ + L++ ++ GRD +R++L+ DT
Sbjct: 299 SKTLGNVVDPFALLE------------KY------GRDALRYYLLREIPYGQDTPV 336
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 50.6 bits (121), Expect = 1e-08
Identities = 10/98 (10%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 9 IIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAK 68
+ + A+ L + + + + GD + ++K+L+ +A+ +
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQELKD 60
Query: 69 NLIQQKNYIKLIQSIEIIKPGFINLKISSS-IKQKIIK 105
L + + G++N ++ + + ++ ++
Sbjct: 61 RLPLPE-----FVEEAVPVGGYLNFRLRTEALLREALR 93
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 54.1 bits (129), Expect = 2e-08
Identities = 48/358 (13%), Positives = 95/358 (26%), Gaps = 54/358 (15%)
Query: 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLAL- 181
KKIL+ G +H+GH + D+ +G++V + G I A
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 61
Query: 182 ------SVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKI 235
+ + +Y+ + T + + I S+ + I N I
Sbjct: 62 LGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTI 121
Query: 236 NDL------KAIRDFSVAYLRREQDIDLKIFGVKFDNYC--LESSLYKTGKVSLVTKLLI 287
+ L + D V D + F ++ L++ V +
Sbjct: 122 SQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQ 181
Query: 288 QSGKTYYKD-----GALWLRTTDYGDDKDRVVRKSNGDFTYFV--------SDIAYHIFK 334
+ ++ + A + + Y + +
Sbjct: 182 EWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDE 241
Query: 335 WERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISK 394
+ + A + N +H VTV NG K+SK
Sbjct: 242 YWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTV--NGA--KMSK 297
Query: 395 RSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLIS----RKSDTDFIFD 448
G++I + D +R++ + R D D +
Sbjct: 298 SRGTFIKASTWLNHF------------------DADSLRYYYTAKLSSRIDDIDLNLE 337
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 51.5 bits (122), Expect = 2e-07
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 97 SSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLF 156
S++ K + + + +I N TG LH+GH ++ D L
Sbjct: 10 KSVEPKWAEKWAKNPFV--ANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYK 67
Query: 157 ISQGYKVTREFYYNDTGVQITNLA 180
+G++ + G+ +
Sbjct: 68 RMRGFEAVWLPGTDHAGIATQVVV 91
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 46.8 bits (111), Expect = 6e-07
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 32 LEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFI 91
LE+ GD+ I + N LA A+ ++ +E P FI
Sbjct: 57 LEWTNTMERGDLLIPIPR--LRIKGANPKDLAVQWAEKFPCG----DFLEKVEANGP-FI 109
Query: 92 NLKIS-SSIKQKIIKYILSSGIKFG 115
+ + + +I IL+ +G
Sbjct: 110 QFFFNPQFLAKLVIPDILTRKEDYG 134
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 46.5 bits (109), Expect = 7e-06
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 99 IKQKIIKYILSSGI-KFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFI 157
+ +I + + N+ ++ G LH+GH + D +
Sbjct: 23 KEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKT 82
Query: 158 SQGYKVTREFYYNDTGVQI 176
QG+ ++ G+ I
Sbjct: 83 MQGFYAPYVPGWDTHGLPI 101
Score = 29.5 bits (65), Expect = 1.2
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 22/88 (25%)
Query: 372 YPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDL 431
Y + H V + GK K+SK G+ I ++K + G D+
Sbjct: 385 YKFLLSHGFV-MDGEGK--KMSKSLGNVIVPDQVVK------------QK------GADI 423
Query: 432 MRFFLISRKSDTDFIFDIDLALKRSDEN 459
R ++ S D + LK++ ++
Sbjct: 424 ARLWVSSTDYLADVRISDE-ILKQTSDD 450
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 45.0 bits (105), Expect = 2e-05
Identities = 39/368 (10%), Positives = 88/368 (23%), Gaps = 60/368 (16%)
Query: 123 KKILIEFVSANPTGPLHIGHGRQCAI-GDILSSLFISQGYKVTREFYYNDTGVQITNLA- 180
+ ++ GP+H GH + DI +G V ++ G I+ A
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
Query: 181 --------LSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIAN 232
+ + + + + G I ++ + + + +
Sbjct: 62 KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 233 GKINDLKAIRDFSVAYLRR--EQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSG 290
K + + F L + + +
Sbjct: 122 TKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMV 181
Query: 291 KTYYKDGALWLR-----------TTDYGDDKDRVVRKSNGDFTYFVSDIAYH-------- 331
++ ++G D D K +V+ ++S H
Sbjct: 182 LSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPN 241
Query: 332 ----IFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNG 387
+ G + I+ G D+ ++ + + N
Sbjct: 242 EWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANE 301
Query: 388 ----KEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLIS---RK 440
+ K S I + + D +R++L +
Sbjct: 302 YLTLEGKKFSTSRNWAIWVHEFLDVF------------------PADYLRYYLTTIMPET 343
Query: 441 SDTDFIFD 448
D+DF F
Sbjct: 344 RDSDFSFS 351
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 44.2 bits (103), Expect = 3e-05
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 97 SSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLF 156
+I+ K ++ G + G K + + P+G LH+GH + +GD+L+
Sbjct: 7 HAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFR 66
Query: 157 ISQGYKVTREFYYNDTGVQITNLAL 181
QGY+V ++ G+ N AL
Sbjct: 67 RMQGYEVLHPMGWDAFGLPAENAAL 91
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 43.8 bits (102), Expect = 4e-05
Identities = 17/171 (9%), Positives = 43/171 (25%), Gaps = 10/171 (5%)
Query: 99 IKQKIIKYILSSGI-KFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFI 157
++++++ + I + N + + G H+GH + + D+
Sbjct: 13 LEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKT 72
Query: 158 SQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKK 217
+GY R ++ G+ + + K K C
Sbjct: 73 MRGYYAPRRAGWDTHGLPVEL-----EVEKKLGLKSKREIEAYGIE----RFNQACRESV 123
Query: 218 KKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYC 268
+ + ++ A Y+ +F
Sbjct: 124 FTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRD 174
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 42.9 bits (100), Expect = 6e-05
Identities = 48/317 (15%), Positives = 97/317 (30%), Gaps = 42/317 (13%)
Query: 133 NPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFL 192
+PTG H+G L + ++ DT + A V + I
Sbjct: 9 SPTGDPHVGTAYI-----ALFNYAWARRNGGRFIVRIEDT-----DRARYVPGAEERILA 58
Query: 193 G-KSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRR 251
K + ++ + + + ++ G A R F
Sbjct: 59 ALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGW-----AYRAFETPEELE 113
Query: 252 EQDIDLKIFGVKFDNYCLESSLYKT--GKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDD 309
+ + + + N E + + G+ ++ + + G T KD + D +
Sbjct: 114 QIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEI 173
Query: 310 KDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIP 369
D V+ KS+G TY +A + G I+ ++ + +A
Sbjct: 174 PDVVLLKSDGYPTY---HLANVVDDHLMGV--TDVIRAEEWLVSTPIHVLLYRAFGW--- 225
Query: 370 NDYPNYILHKMVTVIKNGKEVKISKRSGSYI------------TIRNLIKWLSKTESKND 417
+ P + + ++N + KISKR +RN + + +
Sbjct: 226 -EAPRFYHMPL---LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR 281
Query: 418 SIEFREDLIRGRDLMRF 434
I E+ I+ R
Sbjct: 282 EIFTLEEFIQAFTWERV 298
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium
graveolens) [TaxId: 4045]}
Length = 153
Score = 31.4 bits (71), Expect = 0.13
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 321 FTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKM 380
F FV D+ + K G +++ I+GD GT+ + + G P + ++
Sbjct: 19 FQGFVIDVDTVLPKAAPGAYKSVEIKGDGGPGTLKIIT-----LPDGGP---ITTMTLRI 70
Query: 381 VTVIKNGKEVKISKRSGSYIT-----------------IRNLIKWLSKTESKNDSIEFRE 423
V K S G + ++ K + +K D++ E
Sbjct: 71 DGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEE 130
Query: 424 DLIRGRDLM 432
++ +
Sbjct: 131 NIKYANEQN 139
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 30.6 bits (68), Expect = 0.51
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 133 NPTGPLHIGHGR 144
+P+G LH G
Sbjct: 10 SPSGELHFGSLI 21
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 30.2 bits (67), Expect = 0.62
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 120 GSNKKILIEFVSANPTGPLHIGHGR 144
G + + F P G LHIGH +
Sbjct: 15 GKHTTVHTRF-PPEPNGYLHIGHAK 38
>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 150
Score = 28.4 bits (63), Expect = 1.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 420 EFREDLIRGRDLMRFFLISRKSDTDFIFDIDL-ALKRSDENPV 461
E I+G +LI R + I+DID L+ + NPV
Sbjct: 107 ELNLPAIKGIGGAPLYLIDRFGEGSSIYDIDFVYLEGVERNPV 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.395
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,160,027
Number of extensions: 105531
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 35
Length of query: 582
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,171,896
Effective search space: 576572832
Effective search space used: 576572832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)